Citrus Sinensis ID: 006758
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 632 | 2.2.26 [Sep-21-2011] | |||||||
| O23702 | 636 | C-terminal binding protei | yes | no | 0.982 | 0.976 | 0.712 | 0.0 | |
| Q9YHU0 | 440 | C-terminal-binding protei | N/A | no | 0.485 | 0.697 | 0.309 | 7e-31 | |
| Q9W758 | 437 | C-terminal-binding protei | N/A | no | 0.484 | 0.700 | 0.300 | 8e-31 | |
| Q9Z2F5 | 430 | C-terminal-binding protei | yes | no | 0.493 | 0.725 | 0.307 | 1e-30 | |
| O88712 | 441 | C-terminal-binding protei | yes | no | 0.485 | 0.696 | 0.309 | 1e-30 | |
| O46036 | 476 | C-terminal-binding protei | yes | no | 0.406 | 0.539 | 0.318 | 2e-30 | |
| P56545 | 445 | C-terminal-binding protei | no | no | 0.473 | 0.671 | 0.298 | 4e-30 | |
| P56546 | 445 | C-terminal-binding protei | no | no | 0.473 | 0.671 | 0.298 | 5e-30 | |
| Q9EQH5 | 445 | C-terminal-binding protei | no | no | 0.473 | 0.671 | 0.298 | 5e-30 | |
| Q0VCQ1 | 445 | C-terminal-binding protei | no | no | 0.473 | 0.671 | 0.301 | 5e-30 |
| >sp|O23702|CTBP_ARATH C-terminal binding protein AN OS=Arabidopsis thaliana GN=AN PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/647 (71%), Positives = 527/647 (81%), Gaps = 26/647 (4%)
Query: 1 MMKNRFPAAMPHRDNPTPL-PSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEA 59
M K R A MPHRD P+P P VV LNCIEDC LEQDSLAGVA VE+VPL R+ADGKIE+
Sbjct: 1 MSKIRSSATMPHRDQPSPASPHVVTLNCIEDCALEQDSLAGVAGVEYVPLSRIADGKIES 60
Query: 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIA 119
A AVLLHSLAYLPRAAQRRLRP+QLILCLGS+DR VDS LAADLGLRL+HVDTSRAEEIA
Sbjct: 61 ATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADRAVDSTLAADLGLRLVHVDTSRAEEIA 120
Query: 120 DTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALAT 179
DTVMAL+LGLLRRTHLL+RHALSASGWLGS+QPLCRGMRRCRG+VLGIVGRS SAR LA+
Sbjct: 121 DTVMALILGLLRRTHLLSRHALSASGWLGSLQPLCRGMRRCRGMVLGIVGRSVSARYLAS 180
Query: 180 RSLSFKMSVLYFDVPEGKGKVT----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
RSL+FKMSVLYFDVPEG + FP AARRMDTLNDLLAASDVISLHCA+T++T+QI
Sbjct: 181 RSLAFKMSVLYFDVPEGDEERIRPSRFPRAARRMDTLNDLLAASDVISLHCALTNDTVQI 240
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMP 295
+NAECLQHIKPGAFLVNTGS QLLDDCAVKQLLIDGT+AGCALDGAEGPQWMEAWV+EMP
Sbjct: 241 LNAECLQHIKPGAFLVNTGSCQLLDDCAVKQLLIDGTIAGCALDGAEGPQWMEAWVKEMP 300
Query: 296 NVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI-SDTEGCENEIDDEIEQYN 354
NVLILPRSADYSEEVWMEIR+KAIS+L +FF DGVIP N + + ++E + +
Sbjct: 301 NVLILPRSADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEASEEEEQSPS 360
Query: 355 KLDKVSTLEGSVGGQ----LTDDIQVSPEDS-LKKGISWSRDSPSQLQGSGFSQNSANTK 409
K +K++ +E + Q LT V E S LK+ + SP Q SQN+A K
Sbjct: 361 KHEKLAIVESTSRQQGESTLTSTEIVRREASELKESL-----SPGQQH---VSQNTA-VK 411
Query: 410 SDGRRSRSGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCAS 466
+GRRSRSGKKAKKRH++QK +QK D S L +ESTS + DD AMS T++ +SSRCAS
Sbjct: 412 PEGRRSRSGKKAKKRHSQQKYMQKTDGSSGLNEESTS-RRDDIAMSDTEEVLSSSSRCAS 470
Query: 467 PEELRSRKTPIESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRH 526
PE+ RSRKTP+E +QES+ +L SSKK S E LKDGYVVALYA+D LH+SRQR
Sbjct: 471 PEDSRSRKTPLEVMQESSPNQLVMSSKKFIGKSSELLKDGYVVALYAKDLSGLHVSRQRT 530
Query: 527 KGGGWILETMSNVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFD 585
K GGW L+T+SNV+KRDPAAQF+I ++KDT+GLRSF AGGKLLQINRRMEFVFASHSFD
Sbjct: 531 KNGGWFLDTLSNVSKRDPAAQFIIAYRNKDTVGLRSFAAGGKLLQINRRMEFVFASHSFD 590
Query: 586 AWESWAIEGPLEECRLVNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
WESW++EG L+ECRLVNCRN A LDVR+EILA VG DDGITRW+D
Sbjct: 591 VWESWSLEGSLDECRLVNCRNSSAVLDVRVEILAMVG-DDGITRWID 636
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex (By similarity). Required for cortical microtubules (MTs) arrangement that confers cell shape. Regulates the width of leaves by controlling the polar elongation of leaf cells. Involved in the regulation of trichome branching. Seems to not be able to regulate gene transcription. Regulates epidermal cell divisions and elongation in a non-cell-autonomous manner (regulated by subepidermal cells), but regulates epidermal cell polarity, shape, trichome branching and elongation in a cell-autonomous manner. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9YHU0|CTBP1_XENLA C-terminal-binding protein 1 OS=Xenopus laevis GN=ctbp1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 161/320 (50%), Gaps = 13/320 (4%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAV 63
P M +P PL VAL DC +E L A VA + + + + A
Sbjct: 17 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 73
Query: 64 LLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVM 123
L++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+ M
Sbjct: 74 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTM 133
Query: 124 ALLLGLLRRTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATR 180
+L L RRT L AL + SV+ + G R RG LGI+G +A+A R
Sbjct: 134 CHILNLYRRTTWL-HQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 192
Query: 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
+ +F +V ++D P + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 193 AKTFGFNVFFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 251
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E + + +++ PN++
Sbjct: 252 IKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFTQGPLKDAPNLI 311
Query: 299 ILPRSADYSEEVWMEIRDKA 318
P +A YSE+ +E+R++A
Sbjct: 312 CTPHAAWYSEQASIEMREEA 331
|
Corepressor targeting diverse transcription regulators. Has dehydrogenase activity. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9W758|CTBP2_XENLA C-terminal-binding protein 2 OS=Xenopus laevis GN=ctbp2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 159/316 (50%), Gaps = 10/316 (3%)
Query: 11 PHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAVLLHS 67
P + P P+ +VAL DC +E L A VA + + + + A L++
Sbjct: 21 PILNGPMPVRPLVALLDGRDCTIEMPILKDVATVAFCDAQSTQEIHEKVLSEAVGALMYH 80
Query: 68 LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLL 127
L R + + ++I+ +GS +D AA+LG+ + ++ ++ EE AD+ + +L
Sbjct: 81 TITLSREDLEKFKALRIIIKIGSGYDNIDIKSAAELGIAVCNIPSASVEETADSTLCHIL 140
Query: 128 GLLRRTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSF 184
L RR L A+ SV+ + G R RG LGI+G +A+A R+ +F
Sbjct: 141 NLYRRVTWL-HQAMREGNRPASVEQIREVAGGAARIRGETLGIIGLGRIGQAVALRAKAF 199
Query: 185 KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244
+V+++D P V +RM TL +LL SD I+LHC + + +IN ++ +
Sbjct: 200 NFTVIFYD-PYLADGVERSLGLQRMATLQELLMHSDCITLHCNLNEHNHHLINDFTIKQM 258
Query: 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPR 302
+ G FLVNT L+D+ A+ Q L DG + G ALD E + + +++ PN++ P
Sbjct: 259 RQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 318
Query: 303 SADYSEEVWMEIRDKA 318
+A YSE +E R++A
Sbjct: 319 TAWYSEHASIEAREEA 334
|
Corepressor targeting diverse transcription regulators. Xenopus laevis (taxid: 8355) |
| >sp|Q9Z2F5|CTBP1_RAT C-terminal-binding protein 1 OS=Rattus norvegicus GN=Ctbp1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 163/325 (50%), Gaps = 13/325 (4%)
Query: 2 MKNRFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIE 58
M P M +P PL VAL DC +E L A VA + + + +
Sbjct: 1 MSGVRPPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLN 57
Query: 59 AAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEI 118
A L++ L R + + ++I+ +GS +D A DLG+ + +V + EE
Sbjct: 58 EAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEET 117
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASAR 175
AD+ + +L L RRT L AL + SV+ + G R RG LGI+G +
Sbjct: 118 ADSTLCHILNLYRRTTWL-HQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQ 176
Query: 176 ALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
A+A R+ +F +VL++D P + +R+ TL DLL SD ++LHC + + +
Sbjct: 177 AVALRAKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL 235
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVRE 293
IN ++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E + + +++
Sbjct: 236 INDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 295
Query: 294 MPNVLILPRSADYSEEVWMEIRDKA 318
PN++ P +A YSE+ +E+R++A
Sbjct: 296 APNLICTPHAAWYSEQASIEMREEA 320
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex. Corepressor targeting diverse transcription regulators such as GLIS2. Has dehydrogenase activity. Functions in brown adipose tissue (BAT) differentiation. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O88712|CTBP1_MOUSE C-terminal-binding protein 1 OS=Mus musculus GN=Ctbp1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 162/320 (50%), Gaps = 13/320 (4%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSL---AGVALVEHVPLGRLADGKIEAAAAV 63
P M +P PL VAL DC +E L A VA + + + + A
Sbjct: 17 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 73
Query: 64 LLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVM 123
L++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+ +
Sbjct: 74 LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 133
Query: 124 ALLLGLLRRTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATR 180
+L L RRT L AL + SV+ + G R RG LGI+G +A+A R
Sbjct: 134 CHILNLYRRTTWL-HQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 192
Query: 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
+ +F +VL++D P + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 193 AKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 251
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E + + +++ PN++
Sbjct: 252 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 311
Query: 299 ILPRSADYSEEVWMEIRDKA 318
P +A YSE+ +E+R++A
Sbjct: 312 CTPHAAWYSEQASIEMREEA 331
|
Involved in controlling the equilibrium between tubular and stacked structures in the Golgi complex (By similarity). Co-repressor targeting diverse transcription regulators such as GLIS2. Has dehydrogenase activity. Functions in brown adipose tissue (BAT) differentiation. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O46036|CTBP_DROME C-terminal-binding protein OS=Drosophila melanogaster GN=CtBP PE=1 SV=3 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 140/267 (52%), Gaps = 10/267 (3%)
Query: 58 EAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEE 117
EA A++ H++ L + + + ++I+ +GS +D A +LG+ + +V EE
Sbjct: 69 EAVGALMWHTI-ILTKEDLEKFKALRIIVRIGSGTDNIDVKAAGELGIAVCNVPGYGVEE 127
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLG--SVQPLCRGMRRCRGLVLGIVGRSASAR 175
+ADT M L+L L RRT+ LA + G V+ G R RG LG+VG
Sbjct: 128 VADTTMCLILNLYRRTYWLANMVREGKKFTGPEQVREAAHGCARIRGDTLGLVGLGRIGS 187
Query: 176 ALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233
A+A R+ +F +V+++D +P+G K R+ TL DLL SD +SLHC + +
Sbjct: 188 AVALRAKAFGFNVIFYDPYLPDGIDKSL---GLTRVYTLQDLLFQSDCVSLHCTLNEHNH 244
Query: 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW--MEAWV 291
+IN ++ ++PGAFLVNT L+DD + L G + ALD E + + +
Sbjct: 245 HLINEFTIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPYNVFQGAL 304
Query: 292 REMPNVLILPRSADYSEEVWMEIRDKA 318
++ PN++ P +A +S+ E+R+ A
Sbjct: 305 KDAPNLICTPHAAFFSDASATELREMA 331
|
Corepressor targeting diverse transcription regulators. Hairy-interacting protein required for embryonic segmentation and hairy-mediated transcriptional repression. Drosophila melanogaster (taxid: 7227) |
| >sp|P56545|CTBP2_HUMAN C-terminal-binding protein 2 OS=Homo sapiens GN=CTBP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 13/312 (4%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 87
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ + +L L R
Sbjct: 88 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYR 147
Query: 132 RTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
R L + AL + SV+ + G R RG LG++G + +A+A R+ +F SV
Sbjct: 148 RNTWLYQ-ALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 206
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
+++D P + + +R+ TL DLL SD +SLHC + + +IN ++ ++ GA
Sbjct: 207 IFYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 265
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADY 306
FLVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A Y
Sbjct: 266 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWY 325
Query: 307 SEEVWMEIRDKA 318
SE+ +E+R+ A
Sbjct: 326 SEQASLEMREAA 337
|
Isoform 2 probably acts as a scaffold for specialized synapses. Homo sapiens (taxid: 9606) |
| >sp|P56546|CTBP2_MOUSE C-terminal-binding protein 2 OS=Mus musculus GN=Ctbp2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 13/312 (4%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 87
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ + +L L R
Sbjct: 88 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYR 147
Query: 132 RTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
R L + AL + SV+ + G R RG LG++G + +A+A R+ +F SV
Sbjct: 148 RNTWLYQ-ALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 206
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
+++D P + + +R+ TL DLL SD +SLHC + + +IN ++ ++ GA
Sbjct: 207 IFYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 265
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADY 306
FLVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A Y
Sbjct: 266 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWY 325
Query: 307 SEEVWMEIRDKA 318
SE+ +E+R+ A
Sbjct: 326 SEQASLEMREAA 337
|
Corepressor targeting diverse transcription regulators. Isoform 2 probably acts as a scaffold for specialized synapses (By similarity). Functions in brown adipose tissue (BAT) differentiation. Mus musculus (taxid: 10090) |
| >sp|Q9EQH5|CTBP2_RAT C-terminal-binding protein 2 OS=Rattus norvegicus GN=Ctbp2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 161/312 (51%), Gaps = 13/312 (4%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 87
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ + +L L R
Sbjct: 88 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTVCHILNLYR 147
Query: 132 RTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
R L + AL + SV+ + G R RG LG++G + +A+A R+ +F SV
Sbjct: 148 RNTWLYQ-ALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 206
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
+++D P + + +R+ TL DLL SD +SLHC + + +IN ++ ++ GA
Sbjct: 207 IFYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 265
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADY 306
FLVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A Y
Sbjct: 266 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWY 325
Query: 307 SEEVWMEIRDKA 318
SE+ +E+R+ A
Sbjct: 326 SEQASLEMREAA 337
|
Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation. Isoform 2 probably acts as a scaffold for specialized synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q0VCQ1|CTBP2_BOVIN C-terminal-binding protein 2 OS=Bos taurus GN=CTBP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 160/312 (51%), Gaps = 13/312 (4%)
Query: 15 NPTPLPSVVALNCIEDCVLEQ---DSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
+P PL VAL DC +E LA VA + + + + A +++ L
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITL 87
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
R + + ++I+ +GS VD A +LG+ + ++ ++ EE AD+ + +L L R
Sbjct: 88 TREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYR 147
Query: 132 RTHLLARHALSASGWLGSVQPL---CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
R L + AL + SV+ + G R RG LG++G + +A+A R+ +F SV
Sbjct: 148 RNTWLYQ-ALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSV 206
Query: 189 LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248
L++D P + +R+ TL DLL SD +SLHC + + +IN ++ ++ GA
Sbjct: 207 LFYD-PYLQDGTERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGA 265
Query: 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP--QWMEAWVREMPNVLILPRSADY 306
FLVN L+D+ A+ Q L +G + G ALD E + + +++ PN++ P +A Y
Sbjct: 266 FLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWY 325
Query: 307 SEEVWMEIRDKA 318
SE+ +E+R+ A
Sbjct: 326 SEQASLEMREAA 337
|
Corepressor targeting diverse transcription regulators. Functions in brown adipose tissue (BAT) differentiation (By similarity). Isoform 2 probably acts as a scaffold for specialized synapses. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 632 | ||||||
| 224130386 | 655 | predicted protein [Populus trichocarpa] | 0.969 | 0.935 | 0.792 | 0.0 | |
| 359489641 | 952 | PREDICTED: C-terminal binding protein AN | 0.992 | 0.658 | 0.789 | 0.0 | |
| 255541702 | 930 | 2-hydroxyacid dehydrogenase, putative [R | 0.977 | 0.664 | 0.804 | 0.0 | |
| 387940576 | 645 | angustifolia [Gossypium arboreum] | 0.990 | 0.970 | 0.785 | 0.0 | |
| 224067934 | 620 | predicted protein [Populus trichocarpa] | 0.966 | 0.985 | 0.781 | 0.0 | |
| 356531955 | 617 | PREDICTED: C-terminal binding protein AN | 0.974 | 0.998 | 0.766 | 0.0 | |
| 449432118 | 944 | PREDICTED: C-terminal binding protein AN | 0.982 | 0.657 | 0.764 | 0.0 | |
| 356568437 | 617 | PREDICTED: C-terminal binding protein AN | 0.974 | 0.998 | 0.762 | 0.0 | |
| 449527235 | 636 | PREDICTED: C-terminal binding protein AN | 0.993 | 0.987 | 0.756 | 0.0 | |
| 28804252 | 654 | angustifolia [Ipomoea nil] gi|28804254|d | 0.987 | 0.954 | 0.743 | 0.0 |
| >gi|224130386|ref|XP_002320824.1| predicted protein [Populus trichocarpa] gi|222861597|gb|EEE99139.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/631 (79%), Positives = 557/631 (88%), Gaps = 18/631 (2%)
Query: 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRR 78
LP VV LNCIED +EQDSL+GVAL+EHVPLGRL+DGKIE+AAAVLLHSLAYLPRAAQRR
Sbjct: 26 LPLVVTLNCIEDFAIEQDSLSGVALIEHVPLGRLSDGKIESAAAVLLHSLAYLPRAAQRR 85
Query: 79 LRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLAR 138
LRPYQLILCLGS+DR VDSALAADLGLRL+HVDTSRAEEIADTVMAL LGLLRRTHLL+R
Sbjct: 86 LRPYQLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLRRTHLLSR 145
Query: 139 HALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198
HALSASGWLGS+QPLCRGMRRCRGLVLGIVGRSASAR+LATRSL+FKMSVLYFDV EG G
Sbjct: 146 HALSASGWLGSLQPLCRGMRRCRGLVLGIVGRSASARSLATRSLAFKMSVLYFDVHEGPG 205
Query: 199 K-----VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG------ 247
K +TFP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIIN ECLQHIKPG
Sbjct: 206 KLTRSSITFPLAARRMDTLNDLLAASDLISLHCALTNETVQIINEECLQHIKPGILLSLL 265
Query: 248 ----AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRS 303
AFLVNTGSSQLLDDCA+KQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILPRS
Sbjct: 266 ILRRAFLVNTGSSQLLDDCALKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPRS 325
Query: 304 ADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLE 363
ADYSEEVWMEIR+KAIS+LQ+FFFDG++PKNA+SD EG E+EI DE EQ+++ DK STL+
Sbjct: 326 ADYSEEVWMEIREKAISILQSFFFDGIVPKNAVSDEEGEESEIGDESEQFHRQDKESTLQ 385
Query: 364 GSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKK 423
SVG QLTDDIQ++PE S KK S +S SQ QGSG SQN+ T+SD RRSRSGKKAKK
Sbjct: 386 DSVGEQLTDDIQLTPETSRKKVSGQSIESTSQAQGSGMSQNT-TTRSDERRSRSGKKAKK 444
Query: 424 RHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ-ASSRCASPEELRSRKTPIESIQE 482
RH RQK QK D+PS LEKESTSH+EDDTAMSG+DQ +SSR ASPE+ RSRKTPIE +QE
Sbjct: 445 RHGRQKPRQKSDNPSQLEKESTSHQEDDTAMSGSDQVSSSRFASPEDSRSRKTPIELMQE 504
Query: 483 STSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKR 542
S+S +LSRS K+LS S E LKDG+++ALYARDRPALH+SRQR KGGGW L+ +SNVTKR
Sbjct: 505 SSSGQLSRSGKRLSGKSDELLKDGHIIALYARDRPALHVSRQRAKGGGWFLDALSNVTKR 564
Query: 543 DPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRL 601
DPAAQFL+ ++KDTIGLRSF AGGKLLQINRRMEFVF SHSFD WESW +EG L+ECRL
Sbjct: 565 DPAAQFLVVFRNKDTIGLRSFAAGGKLLQINRRMEFVFTSHSFDVWESWMLEGSLDECRL 624
Query: 602 VNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
VNCRNPLA LD R+EILAA+ EDDG+TRWLD
Sbjct: 625 VNCRNPLAILDARVEILAAIAEDDGVTRWLD 655
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489641|ref|XP_002275405.2| PREDICTED: C-terminal binding protein AN-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/636 (78%), Positives = 564/636 (88%), Gaps = 9/636 (1%)
Query: 5 RFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVL 64
R A+ H PLP VV+LNCI+D LEQ+SL+G+A VEHV L RL+DGKIE+AAAVL
Sbjct: 318 RSSASAAHHHRSAPLPLVVSLNCIDDPSLEQESLSGIASVEHVSLARLSDGKIESAAAVL 377
Query: 65 LHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMA 124
+HSLAYLPRAAQRRLRP+QL+LCLGSSDR+VDSALAADLGLRL+HVDTSRAEE+ADTVMA
Sbjct: 378 IHSLAYLPRAAQRRLRPWQLLLCLGSSDRSVDSALAADLGLRLVHVDTSRAEEVADTVMA 437
Query: 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSF 184
L LGLLRRTHLL+RH LSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR+LATRSL+F
Sbjct: 438 LFLGLLRRTHLLSRHTLSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARSLATRSLAF 497
Query: 185 KMSVLYFDVPEGKGK----VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
KM+VLYFDV EGKGK +TFP AARRMDTLNDLLAASD++SLHC +T+ET+QIINAEC
Sbjct: 498 KMNVLYFDVQEGKGKLSRSITFPPAARRMDTLNDLLAASDLVSLHCTLTNETVQIINAEC 557
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLIL 300
LQHIKPGAFLVNTGSSQLLDDCA+KQLLIDGT+AGCALDGAEGPQWMEAWV+EMPNVLIL
Sbjct: 558 LQHIKPGAFLVNTGSSQLLDDCALKQLLIDGTIAGCALDGAEGPQWMEAWVKEMPNVLIL 617
Query: 301 PRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVS 360
PRSADYSEEVWMEIR+K I +LQT+FFDGVIPKN +SD E E+EI E EQ++K K
Sbjct: 618 PRSADYSEEVWMEIREKTICILQTYFFDGVIPKNTVSDEEDEESEIVYENEQFDKQYKEI 677
Query: 361 TLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKK 420
L+GSVG QLTDD+ VSPE S KKG + S +SPSQ QGSG SQN+ N +S+G+RSRSGKK
Sbjct: 678 ALQGSVGEQLTDDVLVSPESSQKKGTNQSNESPSQHQGSGLSQNTTN-RSEGKRSRSGKK 736
Query: 421 AKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSRKTPI 477
AKKRHARQ+SLQK DDPSALEKESTSH+EDDTAMSGTDQ +SSR ASPE+ RSRKTPI
Sbjct: 737 AKKRHARQRSLQKSDDPSALEKESTSHREDDTAMSGTDQVLSSSSRFASPEDSRSRKTPI 796
Query: 478 ESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMS 537
ES+QESTS++L +SS +LS+ LKDGYV+AL+ARDR ALH+SRQR +GGGW L+TMS
Sbjct: 797 ESVQESTSEQLLKSSMRLSKPGEVLLKDGYVIALHARDRAALHVSRQRVQGGGWFLDTMS 856
Query: 538 NVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPL 596
NVTKRDPAAQFLI +SKDTIGLRSF AGGKLLQINRRMEFVFASHSFD WESW +EG L
Sbjct: 857 NVTKRDPAAQFLIAFRSKDTIGLRSFAAGGKLLQINRRMEFVFASHSFDVWESWMLEGSL 916
Query: 597 EECRLVNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
EECRLVNCRNPLA LDVR+EILAAVGE+DG+TRWLD
Sbjct: 917 EECRLVNCRNPLAVLDVRVEILAAVGEEDGVTRWLD 952
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541702|ref|XP_002511915.1| 2-hydroxyacid dehydrogenase, putative [Ricinus communis] gi|223549095|gb|EEF50584.1| 2-hydroxyacid dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/630 (80%), Positives = 564/630 (89%), Gaps = 12/630 (1%)
Query: 12 HRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYL 71
H+ + PLP VV+LNCIEDC +EQDSLAGVA VEHVPL RLADGKIE+AAAVLLHSLAYL
Sbjct: 304 HKSSSQPLPLVVSLNCIEDCSIEQDSLAGVATVEHVPLSRLADGKIESAAAVLLHSLAYL 363
Query: 72 PRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131
PRAAQRRLRPYQL+LCLGS+DR VDSALAADLGLRL+HVDTSRAEEIADTVMAL LGLLR
Sbjct: 364 PRAAQRRLRPYQLLLCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGLLR 423
Query: 132 RTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYF 191
RTHLL+RHALSASGWLGSVQPLCRGMRRCRGLVLGI+GRSASAR+LATRSL+FKMSVLYF
Sbjct: 424 RTHLLSRHALSASGWLGSVQPLCRGMRRCRGLVLGIIGRSASARSLATRSLAFKMSVLYF 483
Query: 192 DVPEGKGKVT-----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246
D+ EGKGKV+ FP AARRMDTLNDLLAASD+ISLHCA+++ET+QI+NAECLQHIKP
Sbjct: 484 DIHEGKGKVSRSSLRFPPAARRMDTLNDLLAASDLISLHCALSNETVQILNAECLQHIKP 543
Query: 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADY 306
GAFLVNTGSSQLLDDC++KQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILPRSADY
Sbjct: 544 GAFLVNTGSSQLLDDCSLKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPRSADY 603
Query: 307 SEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSV 366
SEEVW+EIRDKAIS+LQ+FFFDGVIPK+ ISD E E+E+ DE EQ++K DK S L+ S+
Sbjct: 604 SEEVWVEIRDKAISLLQSFFFDGVIPKDIISDEE-EESEMGDENEQFHKQDKESFLQASI 662
Query: 367 GGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHA 426
G +LTDDIQVSPE + K I+ S +S SQ QGSG SQ +A +S+G+RSRSGKKAKKRH
Sbjct: 663 GERLTDDIQVSPESTRSKVINQSTES-SQAQGSGLSQTTA-ARSEGKRSRSGKKAKKRHG 720
Query: 427 RQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSRKTPIESIQES 483
RQKS+QKPDD S LEKESTSH+EDD MSGTDQ +SSR ASPE+ RSRKTPIESIQES
Sbjct: 721 RQKSIQKPDDLSHLEKESTSHREDDATMSGTDQVLSSSSRFASPEDSRSRKTPIESIQES 780
Query: 484 TSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRD 543
+ +L RSSKKLS SGE LKDGYV+ALYARDRPALH+SRQR KGGGW L+ MSNVTKRD
Sbjct: 781 NADQLLRSSKKLSGKSGELLKDGYVIALYARDRPALHVSRQRVKGGGWFLDAMSNVTKRD 840
Query: 544 PAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRLV 602
PA+QFL+ +SKDTIGLRSF AGGKLLQINRR EFVFASHSFD WESW +EG LE+CRLV
Sbjct: 841 PASQFLVVFRSKDTIGLRSFAAGGKLLQINRRTEFVFASHSFDVWESWMLEGSLEDCRLV 900
Query: 603 NCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
NCRNPLA LDVRIE+LAAVGEDDG+TRWLD
Sbjct: 901 NCRNPLAVLDVRIEVLAAVGEDDGVTRWLD 930
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|387940576|gb|AFK13152.1| angustifolia [Gossypium arboreum] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/635 (78%), Positives = 556/635 (87%), Gaps = 9/635 (1%)
Query: 5 RFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVL 64
R A MP R+NPTPLP VV+LNC+EDCVLEQ+SLAGV+L EHVPL RLADGKIEAAAAVL
Sbjct: 13 RSSATMPRRNNPTPLPLVVSLNCVEDCVLEQESLAGVSLFEHVPLSRLADGKIEAAAAVL 72
Query: 65 LHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMA 124
LHSLAYLPRAAQRRLRPYQLILCLGSSDR VDSALAADLGLRL+HVD SRAEEIADTVMA
Sbjct: 73 LHSLAYLPRAAQRRLRPYQLILCLGSSDRAVDSALAADLGLRLVHVDVSRAEEIADTVMA 132
Query: 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSF 184
L LGLLRRTHLL+RHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR+LA+RSL+F
Sbjct: 133 LFLGLLRRTHLLSRHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARSLASRSLAF 192
Query: 185 KMSVLYFDVPEGKGKV-----TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239
+MSVLYFDV E GKV FP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIIN+E
Sbjct: 193 RMSVLYFDVVEENGKVRRSSIRFPPAARRMDTLNDLLAASDLISLHCALTNETVQIINSE 252
Query: 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI 299
CLQH+KPGAFLVNTGSSQLLDDCA+KQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLI
Sbjct: 253 CLQHVKPGAFLVNTGSSQLLDDCALKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLI 312
Query: 300 LPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKV 359
LPRSADYSEE WMEIR+KAIS+LQ+FFFDGVIPK+AISD + E+EI DE Q+ DK
Sbjct: 313 LPRSADYSEEAWMEIREKAISMLQSFFFDGVIPKDAISDEDEEESEIVDEKGQFRIQDKE 372
Query: 360 STLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGK 419
S L+GS QL ++IQ SPE SLKK + S+ S +Q G N A KS+GRRSR GK
Sbjct: 373 SALQGSSAEQLINEIQQSPESSLKKDSNQSKQS-NQSPSPGLPHNIA-AKSEGRRSRLGK 430
Query: 420 KAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQA-SSRCASPEELRSRKTPIE 478
KAKKR ARQK+LQK D+P LEKESTS +EDDTAMSGTDQA SS SPE RSRKTPIE
Sbjct: 431 KAKKRQARQKTLQKSDEPLILEKESTSQREDDTAMSGTDQALSSGSQSPEGSRSRKTPIE 490
Query: 479 SIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSN 538
+Q STS +L ++SKKLSEVSG++LKDGY++ALYARDRPALH+SRQR +GGGW L+TMSN
Sbjct: 491 LMQVSTSDQLLKTSKKLSEVSGDSLKDGYIIALYARDRPALHVSRQRVEGGGWFLDTMSN 550
Query: 539 VTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLE 597
VTK+DPAAQFL+ ++K+TIGLRS AGGKLLQINRRMEFVFASHSFD WESW ++GPLE
Sbjct: 551 VTKKDPAAQFLVVYRNKETIGLRSCAAGGKLLQINRRMEFVFASHSFDVWESWTLQGPLE 610
Query: 598 ECRLVNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
ECRLVNCRNP A LD+RIEILAA+GEDDG+TRWLD
Sbjct: 611 ECRLVNCRNPSAVLDIRIEILAAIGEDDGVTRWLD 645
|
Source: Gossypium arboreum Species: Gossypium arboreum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224067934|ref|XP_002302606.1| predicted protein [Populus trichocarpa] gi|222844332|gb|EEE81879.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/622 (78%), Positives = 542/622 (87%), Gaps = 11/622 (1%)
Query: 20 PSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRL 79
P VV LNCIEDC +EQDSL+GVA +EHVPL RL+ GKIE+AAAVLLHSLAYLPRAAQRRL
Sbjct: 1 PLVVTLNCIEDCAIEQDSLSGVASIEHVPLSRLSGGKIESAAAVLLHSLAYLPRAAQRRL 60
Query: 80 RPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARH 139
RPYQLILCLGS+DR VDSALAADLGLRL+HVD SRAEEIADTVMAL LGLLRRTHLL+RH
Sbjct: 61 RPYQLILCLGSADRAVDSALAADLGLRLVHVDNSRAEEIADTVMALFLGLLRRTHLLSRH 120
Query: 140 ALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG- 198
LSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA++LATRSL+FK+SVLYFDV EG G
Sbjct: 121 TLSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAKSLATRSLAFKISVLYFDVHEGPGI 180
Query: 199 ----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254
+ FPSAARRMDTLNDLLAASD+ISLHCA+T+ET+QII+AECLQHIKPGAFLVNTG
Sbjct: 181 LSRSSIAFPSAARRMDTLNDLLAASDLISLHCALTNETVQIISAECLQHIKPGAFLVNTG 240
Query: 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI 314
SSQLLDDCA+KQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILPRSADYSEEVWMEI
Sbjct: 241 SSQLLDDCALKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPRSADYSEEVWMEI 300
Query: 315 RDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLTDDI 374
RDKAIS+LQ+FF DG +PKNA+SD E E+EI +E +Q+++ DK STL+ SV QLTDD+
Sbjct: 301 RDKAISILQSFFLDGTVPKNAVSDEEEEESEIGEESDQFHRQDKESTLQDSVVEQLTDDV 360
Query: 375 QVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHARQKSLQKP 434
QV+ E KK IS S +S S+ Q SG SQN A T+++GRR+R GKKAKKRH QKS QK
Sbjct: 361 QVTLESYHKKVISQSIESTSKAQVSGMSQNMA-TRTEGRRNRLGKKAKKRHGHQKSQQKS 419
Query: 435 DDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSRKTPIESIQESTSKKLSRS 491
DDPS LEKE TSH+EDDTAMSGTDQ + SR ASPE+ RSRKTPIE Q+ TS +LSRS
Sbjct: 420 DDPSQLEKEITSHQEDDTAMSGTDQVLSSGSRFASPEDSRSRKTPIELTQDPTSGQLSRS 479
Query: 492 SKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLIC 551
KKLS S + LKDG+++ALYARD ALH+SRQR KGGGW L+ MSNVTKRDPAAQFL+
Sbjct: 480 GKKLSGKSDKLLKDGHIIALYARDHSALHVSRQRVKGGGWFLDAMSNVTKRDPAAQFLVV 539
Query: 552 -KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRLVNCRNPLAF 610
+SKDTIGLRSF AGGKLLQINRR EFVFASHSFD WESW +EG LEECRLVNCRNPLA
Sbjct: 540 FRSKDTIGLRSFAAGGKLLQINRRTEFVFASHSFDVWESWMLEGSLEECRLVNCRNPLAV 599
Query: 611 LDVRIEILAAVGEDDGITRWLD 632
L+VRIEILAAVGE DG++RWLD
Sbjct: 600 LEVRIEILAAVGE-DGVSRWLD 620
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531955|ref|XP_003534541.1| PREDICTED: C-terminal binding protein AN-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/624 (76%), Positives = 540/624 (86%), Gaps = 8/624 (1%)
Query: 10 MPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLA 69
MPHR+NP PLP VV LNC+EDC LE +SLAGVA VEHVPL RL+DGKIE+AAAVLLHSLA
Sbjct: 1 MPHRNNPAPLPLVVTLNCVEDCSLEFESLAGVATVEHVPLSRLSDGKIESAAAVLLHSLA 60
Query: 70 YLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGL 129
YLPRAAQRRLR Y LILCLGS+DR VDSALAADLGLRL+HVDTSRAEEIADTVMAL LGL
Sbjct: 61 YLPRAAQRRLRSYHLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADTVMALFLGL 120
Query: 130 LRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL 189
LRRTHLL+RHALSASGWLGSVQPLCRGMRRCRGLVLGIVG S+SAR+LATRSL+FKMSVL
Sbjct: 121 LRRTHLLSRHALSASGWLGSVQPLCRGMRRCRGLVLGIVGISSSARSLATRSLAFKMSVL 180
Query: 190 YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249
YFD KGKV FP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIINAECLQH+KPGAF
Sbjct: 181 YFDARAEKGKVKFPPAARRMDTLNDLLAASDLISLHCALTNETMQIINAECLQHVKPGAF 240
Query: 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309
+VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILPRSADYSEE
Sbjct: 241 IVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPRSADYSEE 300
Query: 310 VWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQ 369
VWMEIR+KAIS+LQTFF DG+IPKNA+SD E E+E+D+E EQ ++ + L+ V Q
Sbjct: 301 VWMEIREKAISILQTFFIDGIIPKNAMSDVEE-ESEVDNESEQSDQQYNGNALQIIVREQ 359
Query: 370 LTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHARQK 429
TDD+ VSP++S KK + ++S SQ Q S SQ S + +S+GRRSRSGKKAKKRH R K
Sbjct: 360 -TDDVHVSPDNSQKKISTQMKESSSQHQVSSLSQ-STSARSEGRRSRSGKKAKKRHTRHK 417
Query: 430 SLQKPDDPSALEKESTSHKEDDTAMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLS 489
S QK +DPSALEKE TS + DDTAMSGTDQA S +S E+ R+RKTPIES+QE T ++
Sbjct: 418 SQQKHEDPSALEKEGTSQR-DDTAMSGTDQALS--SSSEDSRNRKTPIESMQEPTGAQVI 474
Query: 490 RSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFL 549
+SS +LS E LKDGY++ALYARD ALH+SRQR KGGGWI+++MSNV+KRDPAAQFL
Sbjct: 475 KSSLRLSGNCTELLKDGYIIALYARDCSALHVSRQRVKGGGWIMDSMSNVSKRDPAAQFL 534
Query: 550 IC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRLVNCRNPL 608
I +SKDTIGLRS AGGKLLQINRRMEFVFASHSFD WE+W +EG L+ECRLVNCRNP
Sbjct: 535 IIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASHSFDVWENWTLEGSLQECRLVNCRNPS 594
Query: 609 AFLDVRIEILAAVGEDDGITRWLD 632
A LDVR+EILA VGE DG+TRWL+
Sbjct: 595 AVLDVRVEILATVGE-DGVTRWLE 617
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432118|ref|XP_004133847.1| PREDICTED: C-terminal binding protein AN-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/634 (76%), Positives = 544/634 (85%), Gaps = 13/634 (2%)
Query: 8 AAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHS 67
AAM HR+NP PLP VV LNCIEDC LEQD LAGVA+VEHVPL RLADGKIE+A AV+LHS
Sbjct: 315 AAMSHRNNPKPLPLVVTLNCIEDCSLEQDCLAGVAVVEHVPLSRLADGKIESATAVVLHS 374
Query: 68 LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLL 127
LAYLPRAAQRRL P LILCLGS+DR+VDSALAADLGLRL+HVDTSRAEEIAD+VMAL L
Sbjct: 375 LAYLPRAAQRRLHPCHLILCLGSADRSVDSALAADLGLRLVHVDTSRAEEIADSVMALFL 434
Query: 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
GLLRRTHLL+RH LSASGWLGS+QPLCRGMRRCRGLVLGIVGRS+SARALATRSL+FK+S
Sbjct: 435 GLLRRTHLLSRHTLSASGWLGSIQPLCRGMRRCRGLVLGIVGRSSSARALATRSLAFKIS 494
Query: 188 VLYFDVPEGKGKV-----TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242
VLYFDV +GKGKV TFPSAARRMDTLNDLLAASD+ISLHCA+T++TIQIINAECLQ
Sbjct: 495 VLYFDVNDGKGKVSKSTATFPSAARRMDTLNDLLAASDLISLHCALTNDTIQIINAECLQ 554
Query: 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR 302
HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILP
Sbjct: 555 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPH 614
Query: 303 SADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTL 362
SADYSEEVWMEIR+K +S+LQ FF DG+IP+NAISD + + E+++ EQ + L
Sbjct: 615 SADYSEEVWMEIREKCVSILQAFFVDGLIPENAISDEDE-DEEVNEVKEQSDGRGVEGIL 673
Query: 363 EGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAK 422
+ +V QLT+D +SPE S KKG++ S +S SQ Q S SQ + T+SDGRRSRSGKKAK
Sbjct: 674 QLAVVEQLTEDNHLSPESSQKKGLNLSPESSSQPQSSSLSQTTV-TRSDGRRSRSGKKAK 732
Query: 423 KRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSRKTPIES 479
KRH QKS QK DD LEKESTSH+EDDTAMSGTDQ +SSR ASP+E R+RK P+ES
Sbjct: 733 KRHTHQKSQQK-DDSLVLEKESTSHREDDTAMSGTDQVLSSSSRFASPDESRNRKVPMES 791
Query: 480 IQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNV 539
+QESTS +S KKL S LKDGYVVA+YARDRPA+H+SRQR KGGGW L+TM++V
Sbjct: 792 MQESTSDPSLKSKKKLGRKSISQLKDGYVVAIYARDRPAVHVSRQRVKGGGWFLDTMTDV 851
Query: 540 TKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEE 598
TKRDPAAQFL+ ++KDTIGLRS +AGGKLLQINRR EFVFASHSFD WESW +EG LEE
Sbjct: 852 TKRDPAAQFLVVFRNKDTIGLRSLSAGGKLLQINRRTEFVFASHSFDVWESWMLEGSLEE 911
Query: 599 CRLVNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
CRLVNCRNPLA LDVRIE+LA VG DDG+TRWLD
Sbjct: 912 CRLVNCRNPLALLDVRIEVLATVG-DDGVTRWLD 944
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568437|ref|XP_003552417.1| PREDICTED: C-terminal binding protein AN-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/624 (76%), Positives = 539/624 (86%), Gaps = 8/624 (1%)
Query: 10 MPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLA 69
MPHR+NP PLP VV LNC+EDC LE +SLAGVA V+HVPL L+DGKIE+AAAVLLHSLA
Sbjct: 1 MPHRNNPAPLPLVVTLNCVEDCSLEFESLAGVATVQHVPLSCLSDGKIESAAAVLLHSLA 60
Query: 70 YLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGL 129
YLPRAAQRRLRPY LILCLGS+DR VDSALAADLGLRL+HVDTSRAEEIAD+VMAL LGL
Sbjct: 61 YLPRAAQRRLRPYHLILCLGSADRAVDSALAADLGLRLVHVDTSRAEEIADSVMALFLGL 120
Query: 130 LRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL 189
LRRTHLL+RH LSASGWLGSVQPLCRGMRRCRGLVLGIVG SASAR+LATRSL+FKMSVL
Sbjct: 121 LRRTHLLSRHPLSASGWLGSVQPLCRGMRRCRGLVLGIVGISASARSLATRSLAFKMSVL 180
Query: 190 YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249
YFD GKGKV FP AARRMDTLNDLLAASD+ISLHCA+T+ET+QIINAECLQH+KPGAF
Sbjct: 181 YFDARAGKGKVKFPPAARRMDTLNDLLAASDLISLHCALTNETMQIINAECLQHVKPGAF 240
Query: 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309
+VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPNVLILP+SADYSEE
Sbjct: 241 IVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPNVLILPQSADYSEE 300
Query: 310 VWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQ 369
VWMEIR+KAIS+LQTFF DG+IPKNAISD E E+E+D+E E ++ + L+ V Q
Sbjct: 301 VWMEIREKAISILQTFFIDGIIPKNAISDVEE-ESEVDNESELSDQQYNENALQIIVREQ 359
Query: 370 LTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSRSGKKAKKRHARQK 429
TDD+ VSP++ KK + ++S SQ Q S SQ S + +S+GRRSRSGKKAKKRH RQK
Sbjct: 360 -TDDVHVSPDNFQKKVSTQMKESSSQHQVSSLSQ-STSARSEGRRSRSGKKAKKRHTRQK 417
Query: 430 SLQKPDDPSALEKESTSHKEDDTAMSGTDQASSRCASPEELRSRKTPIESIQESTSKKLS 489
S QKP+DPSA EKE TS + DDTAMSGTDQA S +S E+ RSRKTPIES+QE T +
Sbjct: 418 SQQKPEDPSAPEKEGTSRR-DDTAMSGTDQALS--SSSEDSRSRKTPIESMQEPTGAQFI 474
Query: 490 RSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFL 549
+S+ +LS E LKDGY++AL+ARDR ALH+SRQR KGGGWI+++MSNV+KRDPAAQFL
Sbjct: 475 KSTVRLSGNCTELLKDGYIIALFARDRSALHVSRQRVKGGGWIMDSMSNVSKRDPAAQFL 534
Query: 550 IC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEECRLVNCRNPL 608
I +SKDTIGLRS AGGKLLQINRRMEFVFASHSFD WE+W +EG L+ECRLVNCRNP
Sbjct: 535 IIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASHSFDVWENWTLEGSLQECRLVNCRNPS 594
Query: 609 AFLDVRIEILAAVGEDDGITRWLD 632
A LDVR+EILA VGE DG+TRWL+
Sbjct: 595 AVLDVRVEILATVGE-DGVTRWLE 617
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527235|ref|XP_004170618.1| PREDICTED: C-terminal binding protein AN-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/640 (75%), Positives = 545/640 (85%), Gaps = 12/640 (1%)
Query: 1 MMKN-RFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEA 59
M +N R AAM HR+NP PLP VV LNCIEDC LEQD LAGVA+VEHVPL RLADGKIE+
Sbjct: 1 MSRNLRSSAAMSHRNNPKPLPLVVTLNCIEDCSLEQDCLAGVAVVEHVPLSRLADGKIES 60
Query: 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIA 119
A AV+LHSLAYLPRAAQRRL P LILCLGS+DR+VDSALAADLGLRL+HVDTSRAEEIA
Sbjct: 61 ATAVVLHSLAYLPRAAQRRLHPCHLILCLGSADRSVDSALAADLGLRLVHVDTSRAEEIA 120
Query: 120 DTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALAT 179
D+VMAL LGLLRRTHLL+RH LSASGWLGS+QPLCRGMRRCRGLVLGIVGRS+SARALAT
Sbjct: 121 DSVMALFLGLLRRTHLLSRHTLSASGWLGSIQPLCRGMRRCRGLVLGIVGRSSSARALAT 180
Query: 180 RSLSFKMSVLYFDVPEG---KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
RSL+FK+SVLYFDV +G K TFPSAARRMDTLNDLLAASD+ISLHCA+T++TIQII
Sbjct: 181 RSLAFKISVLYFDVNDGKVSKSTATFPSAARRMDTLNDLLAASDLISLHCALTNDTIQII 240
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPN 296
NAECLQHIKPGAF+VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPN
Sbjct: 241 NAECLQHIKPGAFIVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPN 300
Query: 297 VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKL 356
VLILP SADYSEEVWMEIR+K +S+LQ FF DG+IP+NAISD + + E+++ EQ +
Sbjct: 301 VLILPHSADYSEEVWMEIREKCVSILQAFFVDGLIPENAISDEDE-DEEVNEVKEQSDGR 359
Query: 357 DKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSR 416
L+ +V QLT+D +SPE S KKG++ S +S SQ Q S SQ + T+SDGRRSR
Sbjct: 360 GVEGILQLAVVEQLTEDNHLSPESSQKKGLNLSPESSSQPQSSSLSQTTV-TRSDGRRSR 418
Query: 417 SGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSR 473
SGKKAKKRH QKS QK DD LEKESTSH+EDDTAMSGTDQ +SSR ASP+E R+R
Sbjct: 419 SGKKAKKRHTHQKSQQK-DDSLVLEKESTSHREDDTAMSGTDQVLSSSSRFASPDESRNR 477
Query: 474 KTPIESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWIL 533
K P+ES+QESTS +S KKL S LKDGYVVA+YARDRPA+H+SRQR KGGGW L
Sbjct: 478 KVPMESMQESTSDPSLKSKKKLGRKSISQLKDGYVVAIYARDRPAVHVSRQRVKGGGWFL 537
Query: 534 ETMSNVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAI 592
+TM++VTKRDPAAQFL+ ++KDTIGLRS +AGGKLLQINRR EFVFASHSFD WESW +
Sbjct: 538 DTMTDVTKRDPAAQFLVVFRNKDTIGLRSLSAGGKLLQINRRTEFVFASHSFDVWESWML 597
Query: 593 EGPLEECRLVNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
EG LEECRLVNCRNPLA LDVRIE+LA VG DDG+TRWLD
Sbjct: 598 EGSLEECRLVNCRNPLALLDVRIEVLATVG-DDGVTRWLD 636
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|28804252|dbj|BAC58020.1| angustifolia [Ipomoea nil] gi|28804254|dbj|BAC58021.1| angustifolia [Ipomoea nil] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/640 (74%), Positives = 542/640 (84%), Gaps = 16/640 (2%)
Query: 7 PAAMPHRDNPT----PLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAA 62
PA M +NPT +P VV LNCIED EQD LAG+ LV+HVPL RLA+ +IE+A+A
Sbjct: 17 PAPMELPNNPTLEKQKMPLVVTLNCIEDTAFEQDCLAGIVLVDHVPLSRLAEARIESASA 76
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGL-RLIHVDTSRAEEIADT 121
VLLHSLA+LPRAAQRRLRP+QLILCLGSSDR VDSALAADLGL RL+HVD SRAEE+ADT
Sbjct: 77 VLLHSLAFLPRAAQRRLRPWQLILCLGSSDRAVDSALAADLGLTRLVHVDCSRAEEVADT 136
Query: 122 VMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181
VMAL+LGLLRRTHLL+RHALSASGWLGSVQPLCRGMRRCRGLVLGI+GRSASAR+LA+RS
Sbjct: 137 VMALILGLLRRTHLLSRHALSASGWLGSVQPLCRGMRRCRGLVLGIIGRSASARSLASRS 196
Query: 182 LSFKMSVLYFDVPEGKGKVT-----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
L+FKMSVLYFD+ EG GKV+ FP+AARRMDTLNDLLAASDVISLHCA+T+ET+QII
Sbjct: 197 LAFKMSVLYFDIQEGNGKVSQTAIRFPTAARRMDTLNDLLAASDVISLHCALTNETVQII 256
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPN 296
NA+CLQHIKPGAFLVNTGS QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWV+EMPN
Sbjct: 257 NADCLQHIKPGAFLVNTGSCQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVKEMPN 316
Query: 297 VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQYNKL 356
VLILPRSADYSEEVWMEIR+KAIS+LQ FF DGVIPK++ISD E E+EI E+ N
Sbjct: 317 VLILPRSADYSEEVWMEIREKAISMLQAFFLDGVIPKDSISDEEEEESEITYGNEECNIR 376
Query: 357 DKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTKSDGRRSR 416
D S ++G VG + T+D+ + E S K +S SR+ P Q QGS SQN + +S+ +RSR
Sbjct: 377 DNQSVMQGPVGERYTEDVNLIAESSQTKIMSESREPPVQPQGSVLSQN-VSERSEVKRSR 435
Query: 417 SGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELRSR 473
SGKKAKKRHARQKS QK D+ EKESTS +D A+SGTDQ +S R +SPE++RSR
Sbjct: 436 SGKKAKKRHARQKSQQKVDEHLKFEKESTSQNDDGAALSGTDQVLSSSPRFSSPEDVRSR 495
Query: 474 KTPIESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWIL 533
KTPIE IQES+S+KL +S+ LS SGE LKDGY++ALYAR PALH+SRQR +GGGW L
Sbjct: 496 KTPIEFIQESSSEKLLKSNMDLSRKSGELLKDGYIIALYARHHPALHVSRQRVQGGGWFL 555
Query: 534 ETMSNVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAI 592
++MSN+TKRDPAAQFL+ +SKDTIGLRSFTAGGKLLQINRRMEFVFASHSFD WESW
Sbjct: 556 DSMSNITKRDPAAQFLVVYRSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDVWESWTF 615
Query: 593 EGPLEECRLVNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
EG LEECRLVNCRNPLA LDVRIE+LAA+GE DGITRWLD
Sbjct: 616 EGSLEECRLVNCRNPLAILDVRIEVLAAIGE-DGITRWLD 654
|
Source: Ipomoea nil Species: Ipomoea nil Genus: Ipomoea Family: Convolvulaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 632 | ||||||
| TAIR|locus:2025376 | 636 | AN "ANGUSTIFOLIA" [Arabidopsis | 0.990 | 0.984 | 0.644 | 1.4e-206 | |
| UNIPROTKB|J9NTH6 | 369 | CTBP1 "Uncharacterized protein | 0.514 | 0.880 | 0.280 | 1.6e-26 | |
| ZFIN|ZDB-GENE-010130-1 | 449 | ctbp1 "C-terminal binding prot | 0.498 | 0.701 | 0.297 | 2.8e-26 | |
| UNIPROTKB|E1C7L0 | 433 | CTBP2 "Uncharacterized protein | 0.522 | 0.762 | 0.264 | 1.1e-25 | |
| UNIPROTKB|F1MYP4 | 419 | CTBP1 "Uncharacterized protein | 0.511 | 0.770 | 0.276 | 1.2e-25 | |
| UNIPROTKB|Q5ZMM8 | 440 | LOC416354 "Uncharacterized pro | 0.501 | 0.720 | 0.283 | 1.6e-25 | |
| UNIPROTKB|Q9W758 | 437 | ctbp2 "C-terminal-binding prot | 0.504 | 0.729 | 0.275 | 1.9e-25 | |
| UNIPROTKB|F1P620 | 430 | CTBP1 "Uncharacterized protein | 0.514 | 0.755 | 0.280 | 2.5e-25 | |
| RGD|2441 | 430 | Ctbp1 "C-terminal binding prot | 0.514 | 0.755 | 0.277 | 2.5e-25 | |
| UNIPROTKB|Q9Z2F5 | 430 | Ctbp1 "C-terminal-binding prot | 0.514 | 0.755 | 0.277 | 2.5e-25 |
| TAIR|locus:2025376 AN "ANGUSTIFOLIA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1998 (708.4 bits), Expect = 1.4e-206, P = 1.4e-206
Identities = 414/642 (64%), Positives = 474/642 (73%)
Query: 1 MMKNRFPAAMPHRDNPTPL-PSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEA 59
M K R A MPHRD P+P P VV LNCIEDC LEQDSLAGVA VE+VPL R+ADGKIE+
Sbjct: 1 MSKIRSSATMPHRDQPSPASPHVVTLNCIEDCALEQDSLAGVAGVEYVPLSRIADGKIES 60
Query: 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIA 119
A AVLLHSLAYLPRAAQRRLRP+QLILCLGS+DR VDS LAADLGLRL+HVDTSRAEEIA
Sbjct: 61 ATAVLLHSLAYLPRAAQRRLRPHQLILCLGSADRAVDSTLAADLGLRLVHVDTSRAEEIA 120
Query: 120 DTVMXXXXXXXXXXXXXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXX 179
DTVM WLGS+QPLCRGMRRCRG+VLGIVG
Sbjct: 121 DTVMALILGLLRRTHLLSRHALSASGWLGSLQPLCRGMRRCRGMVLGIVGRSVSARYLAS 180
Query: 180 XXXXFKMSVLYFDVPEG-KGKVT---FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
FKMSVLYFDVPEG + ++ FP AARRMDTLNDLLAASDVISLHCA+T++T+QI
Sbjct: 181 RSLAFKMSVLYFDVPEGDEERIRPSRFPRAARRMDTLNDLLAASDVISLHCALTNDTVQI 240
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMP 295
+NAECLQHIKPGAFLVNTGS QLLDDCAVKQLLIDGT+AGCALDGAEGPQWMEAWV+EMP
Sbjct: 241 LNAECLQHIKPGAFLVNTGSCQLLDDCAVKQLLIDGTIAGCALDGAEGPQWMEAWVKEMP 300
Query: 296 NVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQY-N 354
NVLILPRSADYSEEVWMEIR+KAIS+L +FF DGVIP N +SD E E+E +E EQ +
Sbjct: 301 NVLILPRSADYSEEVWMEIREKAISILHSFFLDGVIPSNTVSDEEVEESEASEEEEQSPS 360
Query: 355 KLDKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSANTXXXXXX 414
K +K++ +E S Q + S E +++ S ++S S Q SQN+A
Sbjct: 361 KHEKLAIVE-STSRQQGESTLTSTE-IVRREASELKESLSPGQ-QHVSQNTA-VKPEGRR 416
Query: 415 XXXXXXXXXXXXXQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQ---ASSRCASPEELR 471
QK +QK D S L +ESTS + DD AMS T++ +SSRCASPE+ R
Sbjct: 417 SRSGKKAKKRHSQQKYMQKTDGSSGLNEESTSRR-DDIAMSDTEEVLSSSSRCASPEDSR 475
Query: 472 SRKTPIESIQEXXXXXXXXXXXXXXEVSGETLKDGYVVALYARDRPALHISRQRHKGGGW 531
SRKTP+E +QE S E LKDGYVVALYA+D LH+SRQR K GGW
Sbjct: 476 SRKTPLEVMQESSPNQLVMSSKKFIGKSSELLKDGYVVALYAKDLSGLHVSRQRTKNGGW 535
Query: 532 ILETMSNVTKRDPAAQFLIC-KSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESW 590
L+T+SNV+KRDPAAQF+I ++KDT+GLRSF AGGKLLQINRRMEFVFASHSFD WESW
Sbjct: 536 FLDTLSNVSKRDPAAQFIIAYRNKDTVGLRSFAAGGKLLQINRRMEFVFASHSFDVWESW 595
Query: 591 AIEGPLEECRLVNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
++EG L+ECRLVNCRN A LDVR+EILA VG DDGITRW+D
Sbjct: 596 SLEGSLDECRLVNCRNSSAVLDVRVEILAMVG-DDGITRWID 636
|
|
| UNIPROTKB|J9NTH6 CTBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 1.6e-26, P = 1.6e-26
Identities = 96/342 (28%), Positives = 157/342 (45%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
M + ++ + G R RG LGI+G
Sbjct: 122 MCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
F +VL++D P +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYD-PYLSDGTERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
| ZFIN|ZDB-GENE-010130-1 ctbp1 "C-terminal binding protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 100/336 (29%), Positives = 160/336 (47%)
Query: 15 NPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAAVLLHSLAY 70
+P PL VAL DC +E L VA V + K+ EA AA+L H++
Sbjct: 31 HPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVAALLYHTIT- 86
Query: 71 LPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXXXXXX 130
L R + + ++I+ +GS VD AA+LG+ + +V + EE ADT M
Sbjct: 87 LSRDDLDKFKGLRVIVRIGSGFDNVDIKAAAELGIAVCNVPAASVEETADTAMCLILNLY 146
Query: 131 XXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXFKMSV 188
+ ++ + G R RG LGI+G F V
Sbjct: 147 RRVTWMHQALREGTRASSVEQIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFGV 206
Query: 189 LYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246
+++D +P+G V +RM TL DLL SD +SLHC++ + +IN ++ ++
Sbjct: 207 IFYDPYLPDG---VERSLGLQRMATLQDLLMHSDCVSLHCSLNEHNHHLINDFTIKQMRQ 263
Query: 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVLILPRSA 304
GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++ P ++
Sbjct: 264 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHETEPFSFSQGPLKDAPNLICTPHTS 323
Query: 305 DYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
YSE+ +E R++A ++ G IP KN ++
Sbjct: 324 WYSEQASIEAREEAAREVRRAI-TGRIPDSLKNCVN 358
|
|
| UNIPROTKB|E1C7L0 CTBP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 91/344 (26%), Positives = 162/344 (47%)
Query: 1 MMKNRFPAAMPHRDN-PT-PLPSVVALNCIEDCVLEQD---SLAGVALVEHVPLGRLADG 55
M + FP P N P P P V L+ DC +E LA VA + + +
Sbjct: 1 MWRQHFPGIRPQIMNGPMHPRPLVALLDG-RDCTVEMPILKDLATVAFCDAQSTQEIHEK 59
Query: 56 KI-EAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSR 114
+ EA A++ H++ L R + + ++I+ +GS +D A +LG+ + ++ ++
Sbjct: 60 VLNEAVGAMMYHTIT-LTREDLEKFKALRVIVRIGSGYDNIDIKAAGELGIAVCNIPSAA 118
Query: 115 AEEIADTVMXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXX 172
EE AD+ + + ++ + G R RG LG++G
Sbjct: 119 VEETADSTVCHVLNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGR 178
Query: 173 XXXXXXXXXXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232
F +V+++D P + + +R+ TL DLL SD +SLHC + +
Sbjct: 179 TAQAVAVRAKAFGFNVIFYD-PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHN 237
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAW 290
+IN ++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + +
Sbjct: 238 HHLINDFTIKQMRQGAFLVNTARGGLVDEKALTQALKEGRIRGAALDVHESEPFSFAQGP 297
Query: 291 VREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334
+++ PN++ P +A YSE+ +E+R+ A + ++ G IP++
Sbjct: 298 LKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAI-TGRIPES 340
|
|
| UNIPROTKB|F1MYP4 CTBP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 95/344 (27%), Positives = 160/344 (46%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
M + ++ + G R RG LG++G
Sbjct: 122 MCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGVIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238
F +VL++D + +G + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYDPYLADGTERAL---GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND 238
Query: 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPN 296
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN
Sbjct: 239 FTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPN 298
Query: 297 VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
++ P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 299 LICTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
| UNIPROTKB|Q5ZMM8 LOC416354 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 1.6e-25, P = 1.6e-25
Identities = 94/332 (28%), Positives = 156/332 (46%)
Query: 11 PHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAAVLLH 66
P + P P +VAL DC +E L VA V + K+ EA A++ H
Sbjct: 21 PAVNGPMPSRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYH 80
Query: 67 SLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXX 126
++ L R + + ++I+ +GS VD AA+LG+ + ++ +S EE AD+ +
Sbjct: 81 TIT-LSRQDLEKFKALRVIVRIGSGYDNVDIKSAAELGIAVCNIPSSSVEETADSTLCHI 139
Query: 127 XXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXF 184
+ ++ + G R RG LGI+G F
Sbjct: 140 LNLYRRVTWLHQAMREGNRASSVEQIREVAGGAVRIRGETLGIIGLGRVGQAVALRAKSF 199
Query: 185 KMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242
+V+++D +P+G V +R+ TL DLL SD I+LHC++ + +IN ++
Sbjct: 200 GFNVIFYDPYLPDG---VERSLGLQRVGTLQDLLMHSDCITLHCSLNEHNHHLINDFTIK 256
Query: 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVLIL 300
++ G FLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PNV+
Sbjct: 257 QMRQGCFLVNTARGGLVDEKALAQALKEGRIRGTALDVHESEPFSFAQGPLKDAPNVICT 316
Query: 301 PRSADYSEEVWMEIRDKAISVLQTFFFDGVIP 332
P +A YSE+ +E R+ A ++ G IP
Sbjct: 317 PHTAWYSEQASIESREDAAKEIRRAI-TGHIP 347
|
|
| UNIPROTKB|Q9W758 ctbp2 "C-terminal-binding protein 2" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 307 (113.1 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 91/330 (27%), Positives = 153/330 (46%)
Query: 11 PHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAAVLLH 66
P + P P+ +VAL DC +E L VA V + K+ EA A++ H
Sbjct: 21 PILNGPMPVRPLVALLDGRDCTIEMPILKDVATVAFCDAQSTQEIHEKVLSEAVGALMYH 80
Query: 67 SLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMXXX 126
++ L R + + ++I+ +GS +D AA+LG+ + ++ ++ EE AD+ +
Sbjct: 81 TIT-LSREDLEKFKALRIIIKIGSGYDNIDIKSAAELGIAVCNIPSASVEETADSTLCHI 139
Query: 127 XXXXXXXXXXXXXXXXXX--XWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXXXXXF 184
+ ++ + G R RG LGI+G F
Sbjct: 140 LNLYRRVTWLHQAMREGNRPASVEQIREVAGGAARIRGETLGIIGLGRIGQAVALRAKAF 199
Query: 185 KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244
+V+++D G V +RM TL +LL SD I+LHC + + +IN ++ +
Sbjct: 200 NFTVIFYDPYLADG-VERSLGLQRMATLQELLMHSDCITLHCNLNEHNHHLINDFTIKQM 258
Query: 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVLILPR 302
+ G FLVNT L+D+ A+ Q L DG + G ALD E P + + +++ PN++ P
Sbjct: 259 RQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPH 318
Query: 303 SADYSEEVWMEIRDKAISVLQTFFFDGVIP 332
+A YSE +E R++A ++ G IP
Sbjct: 319 TAWYSEHASIEAREEAAKEIRRAIA-GPIP 347
|
|
| UNIPROTKB|F1P620 CTBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 96/342 (28%), Positives = 157/342 (45%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
M + ++ + G R RG LGI+G
Sbjct: 122 MCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
F +VL++D P +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYD-PYLSDGTERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
| RGD|2441 Ctbp1 "C-terminal binding protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 95/342 (27%), Positives = 158/342 (46%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
+ + ++ + G R RG LGI+G
Sbjct: 122 LCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
F +VL++D P + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
| UNIPROTKB|Q9Z2F5 Ctbp1 "C-terminal-binding protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 305 (112.4 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 95/342 (27%), Positives = 158/342 (46%)
Query: 7 PAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLAD--GKI--EAAAA 62
P M +P PL VAL DC +E L VA V + K+ EA A
Sbjct: 6 PPIMNGPMHPRPL---VALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGA 62
Query: 63 VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTV 122
++ H++ L R + + ++I+ +GS +D A DLG+ + +V + EE AD+
Sbjct: 63 LMYHTIT-LTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADST 121
Query: 123 MXXXXXXXXXXX--XXXXXXXXXXXWLGSVQPLCRGMRRCRGLVLGIVGXXXXXXXXXXX 180
+ + ++ + G R RG LGI+G
Sbjct: 122 LCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALR 181
Query: 181 XXXFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240
F +VL++D P + +R+ TL DLL SD ++LHC + + +IN
Sbjct: 182 AKAFGFNVLFYD-PYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT 240
Query: 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P-QWMEAWVREMPNVL 298
++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD E P + + +++ PN++
Sbjct: 241 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 300
Query: 299 ILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP---KNAIS 337
P +A YSE+ +E+R++A ++ G IP KN ++
Sbjct: 301 CTPHAAWYSEQASIEMREEAAREIRRAI-TGRIPDSLKNCVN 341
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O23702 | CTBP_ARATH | No assigned EC number | 0.7125 | 0.9825 | 0.9764 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 632 | |||
| cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 2e-84 | |
| COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 2e-37 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 2e-37 | |
| COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 1e-33 | |
| cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 2e-32 | |
| cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 6e-31 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 6e-31 | |
| cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 1e-30 | |
| cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 1e-27 | |
| cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 3e-27 | |
| cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 4e-26 | |
| cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 4e-25 | |
| cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 9e-24 | |
| cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 2e-23 | |
| cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 3e-23 | |
| PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 6e-23 | |
| cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 1e-22 | |
| cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 2e-21 | |
| PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 3e-21 | |
| cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 5e-21 | |
| cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 6e-21 | |
| cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 4e-20 | |
| cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 9e-20 | |
| cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 1e-19 | |
| cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 1e-19 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 2e-19 | |
| cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 3e-19 | |
| pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 2e-18 | |
| cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 2e-18 | |
| cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 4e-18 | |
| PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 8e-18 | |
| PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 2e-16 | |
| cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 3e-16 | |
| cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 3e-16 | |
| cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 6e-16 | |
| PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 3e-15 | |
| TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 7e-15 | |
| cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 2e-14 | |
| cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 7e-14 | |
| PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 1e-13 | |
| cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 2e-13 | |
| PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 1e-12 | |
| PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 2e-12 | |
| cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 3e-12 | |
| PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 1e-11 | |
| PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 6e-11 | |
| cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 3e-10 | |
| cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 1e-09 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 1e-09 | |
| PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 4e-09 | |
| cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 1e-08 | |
| PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 5e-08 | |
| PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 2e-05 | |
| cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 3e-05 | |
| PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 4e-05 | |
| cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 1e-04 |
| >gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 2e-84
Identities = 112/325 (34%), Positives = 162/325 (49%), Gaps = 23/325 (7%)
Query: 20 PSVVALNCIE-DCVLEQDSL--AGVALVEHVPLGRLADGKIEA--AAAVLLHSLAYLPRA 74
P VV + D +E++ L AGV LV+ + A A A+L+ A +
Sbjct: 1 PKVVITDYDFPDLDIEREVLEEAGVELVD-AQSRTEDELIEAAADADALLVQY-APVTAE 58
Query: 75 AQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134
L ++I+ G VD A A + G+ + +V EE+AD +AL+L L R+
Sbjct: 59 VIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLP 118
Query: 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD-- 192
L R + +RR RGL LG+VG RA+A R+ +F V+ +D
Sbjct: 119 FLDRAVRAGGWDWTV----GGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYDPY 174
Query: 193 VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252
VP+G R+ +L++LLA SDV+SLHC +T ET +I+AE L +KPGAFLVN
Sbjct: 175 VPDGV----AALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
Query: 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGA--EGPQWMEAWVREMPNVLILPRSADYSEEV 310
T L+D+ A+ + L G +AG ALD E P PNV++ P +A YSEE
Sbjct: 231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPL-LSAPNVILTPHAAWYSEES 289
Query: 311 WMEIRDKAIS-VLQTFFFDGVIPKN 334
E+R KA V++ G P+N
Sbjct: 290 LAELRRKAAEEVVR--VLRGEPPRN 312
|
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
| >gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-37
Identities = 89/249 (35%), Positives = 124/249 (49%), Gaps = 12/249 (4%)
Query: 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSA--SGWLGSVQ 151
VD A + G+ + +V E +A+ +AL+L L RR H R S G
Sbjct: 79 NVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDP 138
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
L RG LGI+G +A+A R F M VLY+D + AR +D
Sbjct: 139 LL---GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYD-RSPNPEAEKELGARYVD- 193
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
L++LLA SD+ISLHC +T ET +INAE L +KPGA LVNT L+D+ A+ L G
Sbjct: 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253
Query: 272 TLAGCALD--GAEGPQWMEAWVR--EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327
+AG LD E + +R PNV++ P A +EE + + A+ L+ FF
Sbjct: 254 KIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEA-FF 312
Query: 328 DGVIPKNAI 336
DG +P N +
Sbjct: 313 DGGVPPNEV 321
|
Length = 324 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 7/243 (2%)
Query: 84 LILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSA 143
I G+ +D A G+ + +V + AE +A+ + LLL LLRR
Sbjct: 66 FIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRG 125
Query: 144 SGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP 203
GWL + P G +GIVG + +A R +F M VLY+D K +
Sbjct: 126 WGWLWAGFPG----YELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYD-RTRKPEPEED 180
Query: 204 SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263
R +L++LLA SDV+ LH +T ET +IN E L +KPGA LVNT L+D+ A
Sbjct: 181 LGFRV-VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDA 239
Query: 264 VKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVL 322
+ + L G +AG ALD E P + + E+PNV++ P A Y+EE + + A+ L
Sbjct: 240 LLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENL 299
Query: 323 QTF 325
+ F
Sbjct: 300 ERF 302
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-33
Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 11/289 (3%)
Query: 29 EDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCL 88
D + E + V + + L + A A L+ S+ + + I
Sbjct: 14 PDALEELLAAYDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRA 73
Query: 89 GSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLG 148
G+ +D A G+ +++ A +A+ V+ALLL L RR A + W
Sbjct: 74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARR-IPDADASQRRGEW-- 130
Query: 149 SVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR 208
G +GI+G RA+A R +F M V+ +D P +
Sbjct: 131 --DRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYD-PYSPRERAGVDGVVG 187
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
+D+L++LLA +D+++LH +T ET +INAE L +KPGA L+N ++D+ A+ L
Sbjct: 188 VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAAL 247
Query: 269 IDGTLAGCALDGAEG---PQWMEAWVREMPNVLILPRSADYSEEVWMEI 314
G +AG ALD E P W ++PNV++ P ++E +
Sbjct: 248 DSGKIAGAALDVFEEEPLPADSPLW--DLPNVILTPHIGGSTDEAQERV 294
|
Length = 324 |
| >gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 2e-32
Identities = 88/271 (32%), Positives = 125/271 (46%), Gaps = 27/271 (9%)
Query: 61 AAVLLHSLAYLPR----AAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAE 116
A VL+ + + AA RLR LI G VD A G+ + ++ AE
Sbjct: 44 ADVLVPGMRKVIDAELLAAAPRLR---LIQQPGVGLDGVDLEAATARGIPVANIPGGNAE 100
Query: 117 EIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
+A+ + L+L LLRR R + G G +P R R G +GIVG RA
Sbjct: 101 SVAEHAVMLMLALLRRLPEADRELRA--GRWG--RPEGRPSRELSGKTVGIVGLGNIGRA 156
Query: 177 LATRSLSFKMSVLYFDV---PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233
+A R F + V+Y+D PE + K R L++LLA SDV+SLH +T ET
Sbjct: 157 VARRLRGFGVEVIYYDRFRDPEAEEKDLGV----RYVELDELLAESDVVSLHVPLTPETR 212
Query: 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAW--- 290
+I AE L +KPGA L+NT L+D+ A+ L G LAG LD W E
Sbjct: 213 HLIGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVF----WQEPLPPD 268
Query: 291 --VREMPNVLILPRSADYSEEVWMEIRDKAI 319
+ + NV++ P A ++E + +
Sbjct: 269 DPLLRLDNVILTPHIAGVTDESYQRMAAIVA 299
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
| >gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 6e-31
Identities = 65/205 (31%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+ +A+ + L+L L R+ R + A GW V G LGI+G
Sbjct: 102 SNSVAELTIGLMLALARQIPQADR-EVRAGGWDRPV------GTELYGKTLGIIGLGRIG 154
Query: 175 RALATRSLSFKMSVLYFDV---PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231
+A+A R F M VL +D E + +L +LL SD ISLH +T E
Sbjct: 155 KAVARRLSGFGMKVLAYDPYPDEEFAKEHGV-----EFVSLEELLKESDFISLHLPLTPE 209
Query: 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEGP 284
T +INA L +KPGA L+NT L+D+ A+ + L G +AG ALD A+ P
Sbjct: 210 TRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSP 269
Query: 285 QWMEAWVREMPNVLILPRSADYSEE 309
+ E+PNV++ P ++E
Sbjct: 270 ------LLELPNVILTPHIGASTKE 288
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 6e-31
Identities = 68/180 (37%), Positives = 95/180 (52%), Gaps = 9/180 (5%)
Query: 123 MALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182
+ALLL L RR A + A W +P R G +GI+G RA+A R
Sbjct: 1 LALLLALARRIPE-ADRQVRAGRW----RPDALLGRELSGKTVGIIGLGRIGRAVARRLK 55
Query: 183 SFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242
+F M V+ +D K + R +L++LLA SDV+SLH +T ET +INAE L
Sbjct: 56 AFGMKVIAYDR---YPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLA 112
Query: 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILP 301
+KPGA L+NT L+D+ A+ L G +AG ALD E P + + E+PNV++ P
Sbjct: 113 LMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTP 172
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 1e-30
Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 20/243 (8%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D G+++ + + E ADT + L+LG LR A + A W G
Sbjct: 90 IDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSR-AERSARAGKWRG--FLDL 146
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV------PEGKGKVTFPSAARR 208
RG LGI+G +A+A ++ +F M ++Y + E + S
Sbjct: 147 TLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKALATYYVS---- 202
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
L++LLA SDV+SL+C +T T +IN + +K G +VNT ++D+ A+ L
Sbjct: 203 ---LDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDAL 259
Query: 269 IDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVW--MEIRDKAISVLQTFF 326
G +A LD E + + +MPNV +LP + E ME + ++ F
Sbjct: 260 ESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLTVETQEKMEEL--VLENIEAFL 317
Query: 327 FDG 329
G
Sbjct: 318 ETG 320
|
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
| >gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-27
Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 20/231 (8%)
Query: 83 QLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALS 142
+LI VD A + G+ +++ AE +A+ + L+L R A AL
Sbjct: 69 KLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNI-ARAHAALK 127
Query: 143 ASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKV 200
W RG +GIVG A R +A R +F VL +D V
Sbjct: 128 DGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDP----E 183
Query: 201 TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260
+ + +L +LL SDV+SLH +T ET +I AE +KP A+ +NT + L+D
Sbjct: 184 KIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVD 243
Query: 261 DCAVKQLLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILPRSA 304
+ A+ + L +G + G ALD A+ P + ++ NV + P A
Sbjct: 244 EDALIEALEEGKIGGAALDVFPEEPLPADHP------LLKLDNVTLTPHIA 288
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-27
Identities = 62/247 (25%), Positives = 104/247 (42%), Gaps = 30/247 (12%)
Query: 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT----HLLARHALSASGWLGS 149
+D A +LG+ + +V +A+ +AL+L LLR L +G +G
Sbjct: 80 NIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQDAGVIG- 138
Query: 150 VQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM 209
R +G+VG RA+A R+ F M V+ +D +
Sbjct: 139 --------RELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFRNPE---LEDKGVKY 187
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
+L +L SD+ISLH +T E +IN E + +K G ++NT L+D A+ + L
Sbjct: 188 VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALD 247
Query: 270 DGTLAGCALD--GAEGPQWMEAWVRE------------MPNVLILPRSADYSEEVWMEIR 315
G + G LD E P ++ E PNV+I P +A Y+++ +
Sbjct: 248 SGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMV 307
Query: 316 DKAISVL 322
+ + +
Sbjct: 308 EISCENI 314
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
| >gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 80/257 (31%), Positives = 117/257 (45%), Gaps = 32/257 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLG-LRLI--------HVD----TSRA- 115
LPR + +LC + D+ +D+ L L++I H+D +R
Sbjct: 32 LPREELLEAAKGADGLLCTLT-DK-IDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGI 89
Query: 116 ----------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVL 165
+ AD ALLL RR R + A W P G L
Sbjct: 90 PVTNTPDVLTDATADLAFALLLAAARRVVEGDRF-VRAGEW-KGWSPTLLLGTDLHGKTL 147
Query: 166 GIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH 225
GIVG +A+A R+ F M +LY + K + AR + L++LLA SD +SLH
Sbjct: 148 GIVGMGRIGQAVARRAKGFGMKILYHN-RSRKPEAEEELGARYVS-LDELLAESDFVSLH 205
Query: 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-P 284
C +T ET +INAE L +KP A L+NT ++D+ A+ + L G +AG LD E P
Sbjct: 206 CPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEP 265
Query: 285 QWMEAWVREMPNVLILP 301
+ + +PNV++LP
Sbjct: 266 LPADHPLLTLPNVVLLP 282
|
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
| >gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 24/250 (9%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A + G+ + + E A+ L+L L RR R + G+LG PL
Sbjct: 79 IDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRL-MRRGGFLG-WAPLF 136
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV------PEGKGKVTFPSAARR 208
G LGI+G +A+A R+ +F M +LY++ E + T+
Sbjct: 137 FLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHRLSEETEKELGATYVD---- 192
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
L++LL SD +SLH T ET +I+A + +KP A+L+N L+D+ A+ L
Sbjct: 193 ---LDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDAL 249
Query: 269 IDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR--SADYSEEVWM--EIRDKAISVLQT 324
G +AG ALD E + ++++ NV++ P +A M E D IS L+
Sbjct: 250 KTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATVEARDAMAKEAADNIISFLE- 308
Query: 325 FFFDGVIPKN 334
G PKN
Sbjct: 309 ----GKRPKN 314
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
| >gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 9e-24
Identities = 66/201 (32%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRR-CRGLVLGIVGRSASARAL 177
A+ +AL+L L R +L A W + M RG LGIVG R +
Sbjct: 100 AEHTIALMLALARNIPQADA-SLRAGKWDRK-----KFMGVELRGKTLGIVGLGRIGREV 153
Query: 178 ATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235
A R+ +F M VL +D + + + + +L++LLA +D ISLH +T ET +
Sbjct: 154 ARRARAFGMKVLAYDPYISAER----AAAGGVELVSLDELLAEADFISLHTPLTPETRGL 209
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEGPQWME 288
INAE L +KPGA L+NT ++D+ A+ L G +AG ALD A+ P
Sbjct: 210 INAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSP---- 265
Query: 289 AWVREMPNVLILPRSADYSEE 309
+ +PNV++ P +EE
Sbjct: 266 --LLGLPNVILTPHLGASTEE 284
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 79/289 (27%), Positives = 122/289 (42%), Gaps = 15/289 (5%)
Query: 41 VALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100
L E L AV+ + L A L +LI G +D A
Sbjct: 24 HRLWEAADPAALLAEHGGRIRAVVTNGETGLSAALIAALPALELIASFGVGYDGIDLDAA 83
Query: 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLAR--HALSASGWLGSVQPLCRGMR 158
G+R+ + +++AD + LLL +LRR + + A W PL R +
Sbjct: 84 RARGIRVTNTPGVLTDDVADLAVGLLLAVLRR---IPAADRFVRAGRWPKGAFPLTRKVS 140
Query: 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA 218
R +GIVG RA+A R +F M + Y K V + R +L +L A
Sbjct: 141 GKR---VGIVGLGRIGRAIARRLEAFGMEIAYHG-RRPKPDVPY----RYYASLLELAAE 192
Query: 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278
SDV+ + C T ++NAE L+ + P LVN ++D+ A+ L +G +AG L
Sbjct: 193 SDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIAGAGL 252
Query: 279 DGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
D E P A ++ NV++ P A + E + D ++ L+ FF
Sbjct: 253 DVFENEPNVPAAL-LDLDNVVLTPHIASATVETRRAMGDLVLANLEAFF 300
|
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
| >gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 66/193 (34%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSAS--GWLGSVQ- 151
VD A A + G+ + +V + +A ALLL L L+A H W S
Sbjct: 79 VDLAAAKERGITVTNVPGYSTDSVAQHTFALLLAL---ARLVAYHNDVVKAGEWQKSPDF 135
Query: 152 -----PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA 206
P+ G LGI+G +A+A + +F M VL+ + P
Sbjct: 136 CFWDYPI----IELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGAP-----PLRE 186
Query: 207 RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266
+ L++LLA SDVISLHC +T ET +INAE L +KPGA L+NT L+D+ A+
Sbjct: 187 GYVS-LDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALAD 245
Query: 267 LLIDGTLAGCALD 279
L G +AG LD
Sbjct: 246 ALNSGKIAGAGLD 258
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
| >gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 6e-23
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 22/286 (7%)
Query: 52 LADGKIEAA--AAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIH 109
A+ IE A A +++ S R +L +LI + VD A +LG+ + +
Sbjct: 34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKN 93
Query: 110 VDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC---RGMRRCRGLVLG 166
V + + + V+ ++ L R LS W Q C + RG LG
Sbjct: 94 VTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDR-WATCKQ-FCYFDYPITDVRGSTLG 151
Query: 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT-LNDLLAASDVISLH 225
+ G+ + + + M VLY E KG S R T ++L +D+++LH
Sbjct: 152 VFGKGCLGTEVGRLAQALGMKVLY---AEHKGA----SVCREGYTPFEEVLKQADIVTLH 204
Query: 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEG 283
C +T+ T +INAE L +KP AFL+NTG L+D+ A+ L +G +AG ALD E
Sbjct: 205 CPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEP 264
Query: 284 PQ----WMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325
P+ ++A + +PN+LI P A S+ + +K ++ F
Sbjct: 265 PEKDNPLIQA-AKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEF 309
|
Length = 314 |
| >gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-22
Identities = 70/246 (28%), Positives = 99/246 (40%), Gaps = 44/246 (17%)
Query: 109 HVDTSRAEEIADTVMALLLGLLRR---THLLARH-ALSASGWLGSVQPLCRGMRRCRGLV 164
+V +A+ ALLL L R+ R S +G G G
Sbjct: 91 NVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAGLRG---------FELAGKT 141
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD----TLNDLLAASD 220
LG+VG R +A + F M VL +DV V A R+ +L +LL SD
Sbjct: 142 LGVVGTGRIGRRVARIARGFGMKVLAYDV------VPDEELAERLGFRYVSLEELLQESD 195
Query: 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280
+ISLH T +T +IN E +KPGA L+NT ++D A+ + L +G LAG LD
Sbjct: 196 IISLHVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDV 255
Query: 281 AEG-PQWME---------------AWVR-----EMPNVLILPRSADYSEEVWMEIRDKAI 319
E E + PNV+I P A ++E I D +
Sbjct: 256 LEQEEVLREEAELFREDVSPEDLKKLLADHALLRKPNVIITPHVAYNTKEALERILDTTV 315
Query: 320 SVLQTF 325
++ F
Sbjct: 316 ENIKAF 321
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 2e-21
Identities = 77/271 (28%), Positives = 112/271 (41%), Gaps = 53/271 (19%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHA--------LSASGW 146
VD A +LG+ ++ V +A+ +ALLL L R+ H A S G
Sbjct: 82 VDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIH----RAYNRVREGNFSLDGL 137
Query: 147 LGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA 206
LG + G +G++G +A A F VL +D +P+
Sbjct: 138 LG------FDLH---GKTVGVIGTGKIGQAFARILKGFGCRVLAYDP--------YPNPE 180
Query: 207 R-----RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDD 261
L++LLA SD+ISLHC +T ET +INAE + +K G L+NT L+D
Sbjct: 181 LAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDT 240
Query: 262 CAVKQLLIDGTLAGCALD--GAEGPQWMEAWVRE------------MPNVLILPRSADYS 307
A+ + L G + G LD E + E E PNVLI A ++
Sbjct: 241 KALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLARLLSFPNVLITGHQAFFT 300
Query: 308 EEVWMEIRDKAISVLQ--TFFFDGVIPKNAI 336
+E I A + L+ F G KN +
Sbjct: 301 KEALTNI---AETTLENLDDFEAGKPLKNEV 328
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
| >gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-21
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 83 QLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLA-RHAL 141
+LIL + VD A A + G+ + + +A +ALLL L R L + A+
Sbjct: 68 KLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATR--LPDYQQAV 125
Query: 142 SASGWLGSVQ--PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK 199
+A W S Q L + G LG++G A+A + +F M VL +P
Sbjct: 126 AAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGR--- 182
Query: 200 VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL 259
P+ R+ L++LL D ++LHC +T+ T +I A L +KPGA L+NT L+
Sbjct: 183 ---PARPDRLP-LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLV 238
Query: 260 DDCAVKQLLIDGTLAGCALD--GAEGP-QWMEAWVREMPNVLILPRSADYSEE 309
D+ A+ L G L G A D E P ++P +++ P SA S E
Sbjct: 239 DEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSRE 291
|
Length = 317 |
| >gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 5e-21
Identities = 66/182 (36%), Positives = 93/182 (51%), Gaps = 16/182 (8%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGL---VLGIVGRS 171
E A+ + LL+GL R H+LA SG G +P G GL +GI+G
Sbjct: 100 TEPTAELTIGLLIGLGR--HILAGDRFVRSGKFGGWRPKFYGT----GLDGKTVGILGMG 153
Query: 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTD 230
A RA+A R F ++LY+D P + RR++ L++LL +SD + L +T
Sbjct: 154 ALGRAIARRLSGFGATLLYYD-PHPLDQAEEQALNLRRVE-LDELLESSDFLVLALPLTP 211
Query: 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAW 290
+T+ +INAE L +KPGA LVN ++D+ AV + L G L G A D E ME W
Sbjct: 212 DTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFE----MEDW 267
Query: 291 VR 292
R
Sbjct: 268 AR 269
|
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
| >gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 6e-21
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A G+++I+ + + +A+ V+ L+L L R H R + W
Sbjct: 77 IDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANRE-MKLGKWNKK---KY 132
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV---PEGKGKVTFPSAARRMDT 211
+G RG LGI+G R +A + + M+V+ +D E ++ + +
Sbjct: 133 KG-IELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELGVKTV-----S 186
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
L +LL SD ISLH +T ET +IN + L+ +K GA ++NT ++D+ A+ + L G
Sbjct: 187 LEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKSG 246
Query: 272 TLAGCALD 279
LAG ALD
Sbjct: 247 KLAGAALD 254
|
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
| >gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 4e-20
Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 87 CLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLAR-HALSASG 145
C+G VD AA G+ + + S +A+ V+ ++ L RR L R A
Sbjct: 72 CIG--TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARR--LPDRNAAAHRGI 127
Query: 146 WLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV----PEGKGKVT 201
W S G RG LGI+G L+ + + M V+++D+ P G
Sbjct: 128 WNKS----ATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYDIAEKLPLGN---- 179
Query: 202 FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDD 261
AR++ +L +LLA +D ++LH T T +I AE + +K GA L+N ++D
Sbjct: 180 ----ARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDI 235
Query: 262 CAVKQLLIDGTLAGCALD------GAEGPQWMEAWVREMPNVLILP 301
A+ + L G LAG A+D + G + + ++ +PNV++ P
Sbjct: 236 DALAEALRSGHLAGAAVDVFPEEPASNGEPF-SSPLQGLPNVILTP 280
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 9e-20
Identities = 73/243 (30%), Positives = 104/243 (42%), Gaps = 47/243 (19%)
Query: 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT----HLLARHALSASGWLGS 149
+D LA + GL++ +V IA+ + L LLR T +A+ W
Sbjct: 81 MIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRVAKGDFR---WAPG 137
Query: 150 VQPLCRGMRRCRGLVLGIVG--R--SASARALATRSLSFKMSVLYFDV---PEGKGKVTF 202
+ R R L +GI+G R SA+A+ F V+ +D PE + + +
Sbjct: 138 LIG-----REIRDLTVGIIGTGRIGSAAAKIFK----GFGAKVIAYDPYPNPELEKFLLY 188
Query: 203 PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262
D+L DLL +D+ISLH +T E +INAE +K GA LVN L+D
Sbjct: 189 ------YDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTK 242
Query: 263 AVKQLLIDGTLAGCALDGAEG----------------PQWMEAWVREMPNVLILPRSADY 306
A+ L G +AG ALD E E + MPNVLI P A Y
Sbjct: 243 ALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVLKE--LIAMPNVLITPHIAFY 300
Query: 307 SEE 309
++
Sbjct: 301 TDT 303
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-19
Identities = 72/252 (28%), Positives = 121/252 (48%), Gaps = 36/252 (14%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIAD-TVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153
+D A +LG+++ +V S +AD TVM L+L LR+ + + A LG +Q
Sbjct: 82 IDLDAAKELGIKVSNVTYS-PNSVADYTVM-LMLMALRKYKQIMKRAEVNDYSLGGLQ-- 137
Query: 154 CRGMRRCRGLVLGIVGRSASARALATRSLS-FKMSVLYFDV---PEGKGKVTFPSAARRM 209
G R R L +G++G +A+ ++LS F +L +D E K +
Sbjct: 138 --G-RELRNLTVGVIGTGRIGQAVI-KNLSGFGCKILAYDPYPNEEVKKYAEYVD----- 188
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
L+ L SD+I+LH +T+ET +IN E + +K G ++NT +L+D A+ + L
Sbjct: 189 --LDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLE 246
Query: 270 DGTLAGCALDGAEGP---------------QWMEAWVREMPNVLILPRSADYSEEVWMEI 314
G + G ALD EG + + A +R PNV++ P A Y+++ ++
Sbjct: 247 SGKIGGAALDVIEGEDGIYYNDRKGDILSNREL-AILRSFPNVILTPHMAFYTDQAVSDM 305
Query: 315 RDKAISVLQTFF 326
+ +I L F
Sbjct: 306 VENSIESLVAFE 317
|
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
| >gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-19
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 25/243 (10%)
Query: 68 LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLL 127
LA PR LR ++ S R + + + G+ + + AE +A+ +A +L
Sbjct: 67 LARAPR-----LR---AVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAIL 118
Query: 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
LRR A + W + RG+ G +GIVG RA+ F +
Sbjct: 119 LALRRIPRFAAAYRAGRDWGWPTRRGGRGLY---GRTVGIVGFGRIGRAVVELLRPFGLR 175
Query: 188 VLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245
VL +D +P + + + +L++LLA SDV+SLH +T ET +I+A L ++
Sbjct: 176 VLVYDPYLPAAEAA----ALGVELVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMR 231
Query: 246 PGAFLVNTGSSQLLDDCAVKQLLIDGTLAG---CALD-GAEGPQWMEAWVREMPNVLILP 301
GA +NT L+D+ A L+ +G ALD P ++ +R +PNVL+ P
Sbjct: 232 DGATFINTARGALVDEAA----LLAELRSGRLRAALDVTDPEPLPPDSPLRTLPNVLLTP 287
Query: 302 RSA 304
A
Sbjct: 288 HIA 290
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 2e-19
Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 33/235 (14%)
Query: 95 VDSALAADLGLRLIHVDTSR---AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ 151
VD+ L +L R + + +R IA+ V+ +L R+ AR+ W Q
Sbjct: 70 VDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR-W----Q 124
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL-----YFDVPEGKGKVTFPSAA 206
+R G + IVG R +A R+ +F M V+ P +V
Sbjct: 125 RR-GPVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEV------ 177
Query: 207 RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266
D L++LL +D + +T ET + NAE +KPGA L+N G ++D+ A+ +
Sbjct: 178 YTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIE 237
Query: 267 LLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEI 314
L G +AG ALD A+ P W ++PNV+I P + S +
Sbjct: 238 ALESGRIAGAALDVFEEEPLPADSPLW------DLPNVIITPHISGDSPSYPERV 286
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 3e-19
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 46/241 (19%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGW--LGSVQPLCRGMRR---------CRGL 163
A +A+ V+A++L L+R+ + A W G + +G+ + RG
Sbjct: 84 ANAVAELVIAMML-------ALSRNIIQAIKWVTNGDGDDISKGVEKGKKQFVGTELRGK 136
Query: 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---------RMDTLND 214
LG++G R +A +L+ M V+ +D + S R+ +L +
Sbjct: 137 TLGVIGLGNIGRLVANAALALGMKVIGYD--------PYLSVEAAWKLSVEVQRVTSLEE 188
Query: 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
LLA +D I+LH +TDET +INAE L +KPGA L+N +++D+ A+ + L +G L
Sbjct: 189 LLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLG 248
Query: 275 GCALDGAEGPQWMEAWVREMPNVLILPR---SADYSEEVWMEIRDKAISVLQTFFFDGVI 331
G D E A + +PNV+ P S + +EE A + F G I
Sbjct: 249 GYVTDFPE-----PALLGHLPNVIATPHLGASTEEAEE---NCAVMAARQIMDFLETGNI 300
Query: 332 P 332
Sbjct: 301 T 301
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
| >gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 16/248 (6%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A + G+ + +V E +A+ + L+L L RR ++ A W P+
Sbjct: 74 IDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADA-SVRAGDW-KKGGPIG 131
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV-----PEGKGKVTFPSAARRM 209
+ V+G G A+A M V+ +D +G V
Sbjct: 132 LELYGKTLGVIGGGGIGGIGAAIAKA---LGMGVVAYDPYPNPERAEEGGVEVLLLD--- 185
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
L DL + D+I+L T +T II E +K + N ++++ A+ LL
Sbjct: 186 LLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLE 245
Query: 270 DGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFD 328
+G A E P + ++PNV++ P A +EE + ++A L F
Sbjct: 246 EGIAAAALDVVEEEPPPVNSPLL-DLPNVILTPHIAGATEEAQENMAEEAAENLLA-FLK 303
Query: 329 GVIPKNAI 336
G P NA+
Sbjct: 304 GGTPPNAV 311
|
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
| >gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 2e-18
Identities = 71/240 (29%), Positives = 107/240 (44%), Gaps = 11/240 (4%)
Query: 71 LPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLL 130
P A RL +L++ G + ++D A A + G+ + A+ AL+L L
Sbjct: 59 FPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALA 117
Query: 131 RRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLY 190
R AL A GW ++ G G LGIVG +A +F M V+
Sbjct: 118 RNLPEEDA-ALRAGGWQTTL-----GTG-LAGKTLGIVGLGRIGARVARIGQAFGMRVIA 170
Query: 191 FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250
+ + + + +L A SDV+SLH ++D T ++ AE L +KP A L
Sbjct: 171 WS-SNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALL 229
Query: 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE-GPQWMEAWVREMPNVLILPRSADYSEE 309
VNT L+D+ A+ L G +AG ALD + P + +R +PNVL+ P Y E
Sbjct: 230 VNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIG-YVTE 288
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
| >gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 4e-18
Identities = 65/226 (28%), Positives = 104/226 (46%), Gaps = 13/226 (5%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+ +A+ +AL+L +LR+ A A+ W + + G G +GI+G
Sbjct: 104 RDAVAEHAVALILTVLRKI-NQASEAVKEGKW--TERANFVG-HELSGKTVGIIGYGNIG 159
Query: 175 RALA-TRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231
+A F VL +D V E K + +L +LLA SD+ISLH +T+E
Sbjct: 160 SRVAEILKEGFNAKVLAYDPYVSEEVIK----KKGAKPVSLEELLAESDIISLHAPLTEE 215
Query: 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAW 290
T +IN + +K G LVNT +L+D+ A+ + L G +AG LD E P +
Sbjct: 216 TYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHP 275
Query: 291 VREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
+ NV+I P Y+ E + +K + ++ F G PK +
Sbjct: 276 LLHYENVVITPHIGAYTYESLYGMGEKVVDDIED-FLAGKEPKGIL 320
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
| >gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 8e-18
Identities = 62/214 (28%), Positives = 93/214 (43%), Gaps = 14/214 (6%)
Query: 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153
D + L+H T E +ADT+MAL+L RR +A + A W S+ P
Sbjct: 79 NFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAER-VKAGEWTASIGPD 137
Query: 154 CRGMRRCRGLVLGIVGRSASARALATRS-LSFKMSVLYFDVPEGKGKVTFPSAARRMDT- 211
G LGIVG ALA R+ F M +LY + A R +
Sbjct: 138 WFGTD-VHHKTLGIVGMGRIGMALAQRAHFGFNMPILY------NARRHHKEAEERFNAR 190
Query: 212 ---LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
L+ LL SD + + +TDET + AE +K A +N G ++D+ A+ L
Sbjct: 191 YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAAL 250
Query: 269 IDGTLAGCALDGAEG-PQWMEAWVREMPNVLILP 301
G + LD E P +++ + +PNV+ +P
Sbjct: 251 QKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVP 284
|
Length = 323 |
| >gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-16
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 28/196 (14%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
+A+ V+ ++ LLR + ++A + G W S G RG LGIVG
Sbjct: 112 VAELVIGEIILLLRG--IPEKNAKAHRGGWNKSAA----GSFEVRGKTLGIVGYGHIGTQ 165
Query: 177 LATRSLSFKMSVLYFDV----PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232
L+ + S M V ++D+ P G AR++ +L +LLA SDV+SLH T T
Sbjct: 166 LSVLAESLGMRVYFYDIEDKLPLGN--------ARQVGSLEELLAQSDVVSLHVPETPST 217
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEGPQ 285
+I AE L +KPGA L+N ++D A+ L G LAG A+D P
Sbjct: 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDP- 276
Query: 286 WMEAWVREMPNVLILP 301
E+ +R + NV++ P
Sbjct: 277 -FESPLRGLDNVILTP 291
|
Length = 409 |
| >gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 3e-16
Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 39/276 (14%)
Query: 90 SSDRTVDSALAADLGLRLIHV--------DTSR-------------AEEIADTVMALLLG 128
T + ALAA L+LI V R + +A+ +AL+L
Sbjct: 46 GGRLTKEEALAALKRLKLIQVPSAGVDHLPLERLPEGVVVANNHGNSPAVAEHALALILA 105
Query: 129 LLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
L +R ++ G W G + RG +GI+G R +A +F M
Sbjct: 106 LAKR--IVEYDNDLRRGIWHGRAGEE-PESKELRGKTVGILGYGHIGREIARLLKAFGMR 162
Query: 188 VLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKP 246
V+ K + + L++ L +DV+ + +T +T +I A L +KP
Sbjct: 163 VIGVS---RSPKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKP 219
Query: 247 GAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD------GAEGPQWMEAW-VREMPNVLI 299
GA LVN G ++D+ A+ + L + +AG A+D P + E+PNV++
Sbjct: 220 GAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIM 279
Query: 300 LPRSADYSEEVWME-IRDKAISVLQTFFFDGVIPKN 334
P +A ++EE + I + A ++ + + G N
Sbjct: 280 SPHNAGWTEETFRRRIDEAAENIRR--YLRGEPLLN 313
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 61/222 (27%), Positives = 93/222 (41%), Gaps = 28/222 (12%)
Query: 113 SRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172
AE IA+ V+A +L L A W +PL G LGIVG A
Sbjct: 94 VAAEAIAEFVLAAILA--AAKRLPEIWVKGAEQW--RREPL----GSLAGSTLGIVGFGA 145
Query: 173 SARALATRSLSFKMSVL-------YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH 225
+ALA R+L+ M VL DVP L +L A SD + L
Sbjct: 146 IGQALARRALALGMRVLALRRSGRPSDVP----------GVEAAADLAELFARSDHLVLA 195
Query: 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ 285
+T ET +INA+ L KPG L+N L+D A+ + L G ++ +LD + P+
Sbjct: 196 APLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTD-PE 254
Query: 286 WMEA--WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325
+ + P V + P ++ + + + D+ + L +
Sbjct: 255 PLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARY 296
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
| >gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 6e-16
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 9/214 (4%)
Query: 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLG 128
AY+ + + +L L G VD A D G+ + V S +A+ V+ ++L
Sbjct: 72 AYMTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILI 131
Query: 129 LLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSV 188
L+R A+ GW +V + + G +G VG + R F + +
Sbjct: 132 LVRNYVPGHEQAI-EGGW--NVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHL 188
Query: 189 LYFD---VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245
LY+D +PE K R L D+++ DV++++C + ET + N E L +K
Sbjct: 189 LYYDRHRLPEEVEKEL---GLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMK 245
Query: 246 PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
GA+LVNT ++ D AV + L G LAG A D
Sbjct: 246 KGAYLVNTARGKICDREAVAEALESGHLAGYAGD 279
|
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
| >gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 3e-15
Identities = 64/221 (28%), Positives = 97/221 (43%), Gaps = 12/221 (5%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV--QP 152
+D A G+ + + E AD ALLL RR S V P
Sbjct: 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHP 140
Query: 153 LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD-- 210
L G +GI+G +A+A R+ F M +LY+ + P A + +
Sbjct: 141 LMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYS------RTRKPEAEKELGAE 194
Query: 211 --TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
L +LL SD +SLH +T ET +IN E L+ +KP A LVNT +++D A+ + L
Sbjct: 195 YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKAL 254
Query: 269 IDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309
+G +AG LD E + + + NV++ P + E
Sbjct: 255 KEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFE 295
|
Length = 333 |
| >gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 7e-15
Identities = 42/146 (28%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGK---VTFPSAARRMDTLNDL 215
G LG++G +A R+ +F M VL +D + + + V +D L++L
Sbjct: 137 YGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVE------LVDDLDEL 190
Query: 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275
LA +D I++H +T ET +I AE L +K G +VN ++D+ A+ + L +G +
Sbjct: 191 LARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250
Query: 276 CALDGAEGPQWMEAWVREMPNVLILP 301
ALD E + + ++ NV+ P
Sbjct: 251 AALDVFEKEPPTDNPLFDLDNVIATP 276
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
| >gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L++LLA SD++SLH + DET +I E L +K A L+NT ++D+ A+ L +
Sbjct: 190 SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALADALNE 249
Query: 271 GTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIR 315
G +AG +D E P + + PN ++ P A +EE ME R
Sbjct: 250 GKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEA-MEKR 295
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
| >gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 29/202 (14%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
AE +A+ +ALLL LR+ AR A+ W + RG + IVG
Sbjct: 84 AETVAEHALALLLAGLRQLPARAR----ATTW--DPAEEDDLVTLLRGSTVAIVGAGGIG 137
Query: 175 RALATRSLSFKMSVLYFD----VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD 230
RAL F V+ + EG + T P D L+++ +D + L +T
Sbjct: 138 RALIPLLAPFGAKVIAVNRSGRPVEGADE-TVP-----ADRLDEVWPDADHVVLAAPLTP 191
Query: 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEG 283
ET +++A L +KP A+LVN L+D A+ L G +AG ALD
Sbjct: 192 ETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGH 251
Query: 284 PQWMEAWVREMPNVLILPRSAD 305
P W +PN LI P A+
Sbjct: 252 PLWS------LPNALITPHVAN 267
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
| >gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 161 RGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------- 202
+G +G++G SA AR + FKM+++Y+D+ + F
Sbjct: 164 KGQTVGVIGAGRIGSAYARMMVE---GFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ 220
Query: 203 PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262
P +R ++ ++L +DVISLH + T +IN E L +K A LVN ++D+
Sbjct: 221 PVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEV 280
Query: 263 AVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYS 307
A+ + L + LD E +M+ + +M N +++P A S
Sbjct: 281 ALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASAS 325
|
Length = 386 |
| >gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 52/230 (22%), Positives = 89/230 (38%), Gaps = 30/230 (13%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGL---LRRTHLLARHALSASGWLGSVQ 151
+D A + G+ L + + + + + +LL L L R R+ + W
Sbjct: 76 IDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI----WDREGN 131
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
RG+ G +GI+G +A A R F V+ +D + F A +
Sbjct: 132 ---RGVE-LMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYK-----NFGDAYAEQVS 182
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT--GSSQLLDDCAVKQLLI 269
L L +D++SLH +T ET ++N E + K + +NT G + D + + L
Sbjct: 183 LETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKD--LVKALK 240
Query: 270 DGTLAGCALD-------GAEGPQWMEAWVREM---PNVLILPRSADYSEE 309
G + G LD E + P V++ P A ++ E
Sbjct: 241 SGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWTFE 290
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 1e-12
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 18/127 (14%)
Query: 161 RGLVLGIVG--RSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMD----TL 212
G LGI+G R S +A R+ +F M V+ +D + + A ++ +L
Sbjct: 139 YGKTLGIIGLGRIGSE--VAKRAKAFGMKVIAYDPYISPER--------AAQLGVELVSL 188
Query: 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
++LLA +D I+LH +T ET +I AE L +KPG ++N ++D+ A+ + L G
Sbjct: 189 DELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGK 248
Query: 273 LAGCALD 279
+AG ALD
Sbjct: 249 VAGAALD 255
|
Length = 526 |
| >gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 5/212 (2%)
Query: 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLG 128
AYL + +L + G VD A++ G+ + V S + +A+ V+ ++L
Sbjct: 102 AYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILA 161
Query: 129 LLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
L+R + H + G W ++ G+ +GIVG A+ R F +
Sbjct: 162 LVR--NYEPSHRQAVEGGW--NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVK 217
Query: 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247
+ Y D +V + + L++ DV+++HC + ET + +A+ L +K G
Sbjct: 218 LHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRG 277
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
++LVNT +++D AV + L G LAG A D
Sbjct: 278 SYLVNTARGKIVDRDAVVRALESGHLAGYAGD 309
|
Length = 385 |
| >gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 35/241 (14%)
Query: 93 RTV-----DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWL 147
RTV D A +LG ++ V + IA+ L + L R T A + +
Sbjct: 75 RTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRT-ANKNFK 133
Query: 148 GSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPS 204
+ +R ++G GR A + L K V+ +D+ VTF S
Sbjct: 134 VDPFMFSKEIRNSTVGIIGT-GRIGLTAAKLFKGLGAK--VIGYDIYPSDAAKDVVTFVS 190
Query: 205 AARRMDTLNDLLAASDVISLHCA-VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263
L++LL SD+ISLH + + ++IN E + +K GA L+NT +L D+ A
Sbjct: 191 -------LDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEA 243
Query: 264 VKQLLIDGTLAGCALD--------------GAEGP-QWMEAWVREMPNVLILPRSADYSE 308
+ + L G LAG D G + +E + P VL+ P Y++
Sbjct: 244 ILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTD 303
Query: 309 E 309
E
Sbjct: 304 E 304
|
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
| >gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 15/201 (7%)
Query: 84 LILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSA 143
LI + VD A G+ + +V E +A A+LL LL R + R+ S
Sbjct: 66 LICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSG 125
Query: 144 SGWLGSVQP----LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK 199
+ S P + R + +G GI+G + +A + +F V+Y+ GK K
Sbjct: 126 E-Y--SESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYS-TSGKNK 181
Query: 200 -VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258
+ +L +LL SD+IS+H + ++T +I + L+ +K GA L+N G +
Sbjct: 182 NEEYERV-----SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236
Query: 259 LDDCAVKQLLIDGTLAGCALD 279
+++ + + L D LD
Sbjct: 237 VNEKDLAKAL-DEKDIYAGLD 256
|
Length = 311 |
| >gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
+ + +D++ L C +T ET I+N E L +K GA LVN LLD AV L G
Sbjct: 220 IYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279
Query: 272 TLAGCALDGAEGPQWMEAW-----VREMPNVLILPRSADYSE 308
L G A+D A W E + + + PNV+I P A +E
Sbjct: 280 HLGGLAIDVA----WSEPFDPDDPILKHPNVIITPHVAGVTE 317
|
Length = 347 |
| >gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVP--EGKGKVTFPSAARRMDTLNDLLAA 218
+G +GIVG LA R + M+VL D P E +G F S L +LLA
Sbjct: 114 KGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAEAEGDPGFVS-------LEELLAE 166
Query: 219 SDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
+D+I+LH +T + T +++ + L +KPG L+N ++D+ A+ LL G
Sbjct: 167 ADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQALLALLQRGKDL 226
Query: 275 GCALD 279
LD
Sbjct: 227 RVVLD 231
|
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
| >gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGW---LGSVQPL--CRGMRRCRGLVLGIVGRSA 172
+A+ +AL+L +RR + R A W LG +QPL + G + I G +
Sbjct: 95 VAEHTLALILAAVRRLDEM-REAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGS 153
Query: 173 SARALATRSLSFKMSVLYFDVPEGKG-KVTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231
+ LA + V V G + FP A D L +LL +DV+ + T
Sbjct: 154 IGQRLAPLLTALGARVT--GVARSAGERAGFPVVAE--DELPELLPETDVLVMILPATPS 209
Query: 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-------GAEGP 284
T ++AE L + A++VN G +D+ A+ L G L G ALD A P
Sbjct: 210 TAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSP 269
Query: 285 QWMEAWVREMPNVLILPRSA 304
W + PN+++ P +A
Sbjct: 270 LW------DAPNLILTPHAA 283
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 79/287 (27%), Positives = 108/287 (37%), Gaps = 62/287 (21%)
Query: 38 LAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDS 97
L + +V AD ++ A P RL + I LG+ VD
Sbjct: 23 LPDIEVVVWPDPADPAD--VDYALV------WKPPPGLLARLPNLKAIFSLGAG---VD- 70
Query: 98 ALAADLGL------RLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ 151
L AD L RL VD A+ +A+ V+A +L L R A W
Sbjct: 71 HLLADPDLPDVPIVRL--VDPGLAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV-W--KPL 125
Query: 152 PLCRGMRRCRGLV-LGIVGRSASARALATRSLSFKMSVLYFDV------P-EGKGKVTFP 203
P R G++ LG +G A AR LA L F V P + +G F
Sbjct: 126 PQRPAAERRVGVLGLGELGA-AVARRLAA---------LGFPVSGWSRSPKDIEGVTCFH 175
Query: 204 SAARRMDTLNDLLAASDVISLHCAV--TDETIQIINAECLQHIKPGAFLVNTGSSQLLDD 261
+ L+ LA +D+ L C + T ET I+NAE L + GA L+N G L +
Sbjct: 176 GE----EGLDAFLAQTDI--LVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVE 229
Query: 262 CAVKQLLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILP 301
+ L G L+G LD A+ P W P V + P
Sbjct: 230 ADLLAALDSGHLSGAVLDVFEQEPLPADHPLW------RHPRVTVTP 270
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 8/236 (3%)
Query: 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIA-DTVMALLL 127
AY+ ++ + +L+L G +D AA GL + V S +A D +M +L+
Sbjct: 109 AYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILI 168
Query: 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187
L R L H + + W +V + G +G VG R L R F +
Sbjct: 169 --LLRNFLPGYHQVVSGEW--NVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN 224
Query: 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247
+LY D + ++ + A+ + L+ +L DV+ ++ +T++T + N E + +K G
Sbjct: 225 LLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKG 284
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVREMPNVLILP 301
+VN ++D AV G + G D + W R MPN + P
Sbjct: 285 VLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPW-RYMPNHAMTP 339
|
Length = 386 |
| >gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 51/244 (20%), Positives = 97/244 (39%), Gaps = 41/244 (16%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+ IA+ ++ +L + + + W + G + +G +
Sbjct: 94 SIPIAEWIVGYILEIYKGLKKAYK-NQKEKKWKMD-----SSLLELYGKTILFLGTGSIG 147
Query: 175 RALATRSLSFKMSVL----------YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
+ +A R +F M V+ YFD +P + L+++L +D++
Sbjct: 148 QEIAKRLKAFGMKVIGVNTSGRDVEYFDK-------CYPL-----EELDEVLKEADIVVN 195
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE-- 282
+T+ET + + + +K GA +N G +D+ A+ + L + + G ALD E
Sbjct: 196 VLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEE 255
Query: 283 -----GPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337
P W ++ NVLI P + SE + D L++F DG + KN +
Sbjct: 256 PLPKDSPLW------DLDNVLITPHISGVSEHFNERLFDIFYENLKSFLEDGELLKNVVD 309
Query: 338 DTEG 341
+G
Sbjct: 310 LNKG 313
|
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 53/252 (21%), Positives = 100/252 (39%), Gaps = 36/252 (14%)
Query: 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSAS-GWLGSVQPLC 154
D LA + + +V + E IA+ +++ L L+RR + R + W +
Sbjct: 84 DLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMS-- 141
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA----RRMD 210
+ + + + I+G A A F ++ +D +P+ D
Sbjct: 142 ---KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDA--------YPNKDLDFLTYKD 190
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
++ + + +D+ISLH E+ + + H+K GA LVN +++ + + D
Sbjct: 191 SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND 250
Query: 271 GTLAGCALDG--AEGPQWMEAWVR------------EMPNVLILPRSADYSEEVWMEI-- 314
GTL G A+D E + W E +L+ P A +S+E +
Sbjct: 251 GTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVE 310
Query: 315 --RDKAISVLQT 324
+ A+SV+ T
Sbjct: 311 GGLNAALSVINT 322
|
Length = 330 |
| >gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
DT+ + + +D+++LH T + NA+ +H K GA VN L+D A+ L
Sbjct: 192 DTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALD 251
Query: 270 DGTLAGCALDGAEG 283
+G + G ALD E
Sbjct: 252 NGLIKGAALDTYEF 265
|
Length = 332 |
| >gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 24/172 (13%)
Query: 162 GLVLGIVGRSASARALATRSLSFKMSVLYF------DVPEGKGKVTFPSAARRMDTLNDL 215
GL +GI+G + + +A F V Y+ D E KG P LN+L
Sbjct: 138 GLKVGIIGLGTTGQMIADALSFFGADVYYYSRTRKPDA-EAKGIRYLP--------LNEL 188
Query: 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL--IDGTL 273
L DVI + + ++ E + + G L NT + A+K+ L +
Sbjct: 189 LKTVDVICTC---LPKNVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNI 245
Query: 274 AGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325
C GA G + + + PNV+ +SA ++ + + + K ++ L+ +
Sbjct: 246 FDCDTAGALGDEELLRY----PNVICTNKSAGWTRQAFERLSQKVLANLEEY 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
| >gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 147 LGSVQPLC--RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP--EGKGKVTF 202
LGS+ L G+ G+VG L VL D P E +G F
Sbjct: 100 LGSLLTLAEREGVD-LAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDF 158
Query: 203 PSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSSQL 258
S L +L DVISLH +T E T +++ L ++PGA+L+N +
Sbjct: 159 VS-------LERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAV 211
Query: 259 LDDCAVKQLLIDGTLAGCALDGAEG-PQ 285
+D+ A+++ L+ G LD EG PQ
Sbjct: 212 VDNQALREALLSGEDLDAVLDVWEGEPQ 239
|
Length = 381 |
| >gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 75/285 (26%), Positives = 103/285 (36%), Gaps = 58/285 (20%)
Query: 39 AGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSA 98
GV +V G D + V + A A R L +++ L + V
Sbjct: 18 PGVEVVVWDGEGPPPDAAADVEFVVPPYMAAPPVLEALRALPRLRVVQTLSAGYDGVLPL 77
Query: 99 LAADLGL---RLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR 155
L + L R +H D S AE +AL+L LR R A + W P
Sbjct: 78 LPEGVTLCNARGVH-DASTAE----LAVALILASLRGLPRFVR-AQARGRWEPRRTPSLA 131
Query: 156 GMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR------- 208
R VL IVG + RA+ R F++ V AR
Sbjct: 132 DRR-----VL-IVGYGSIGRAIERRLAPFEVRVTRV--------------ARTARPGEQV 171
Query: 209 --MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266
+D L LL +DV+ L +TDET +++AE L + GA LVN ++D A
Sbjct: 172 HGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDA--- 228
Query: 267 LLIDGTLAG---CALD-------GAEGPQWMEAWVREMPNVLILP 301
L+ +G ALD P W P VLI P
Sbjct: 229 -LVAELASGRLRAALDVTDPEPLPPGHPLW------SAPGVLITP 266
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 632 | |||
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
| PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 100.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 100.0 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 100.0 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.79 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.76 | |
| PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.71 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.54 | |
| PLN02494 | 477 | adenosylhomocysteinase | 99.54 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.44 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.42 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.35 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.29 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.25 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.2 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.16 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.16 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.14 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.11 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.07 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.01 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.97 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.97 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.96 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.95 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.91 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.89 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.85 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.85 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.85 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.84 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.83 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 98.78 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.78 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.72 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.72 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 98.72 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 98.7 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 98.7 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.68 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.67 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.64 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.62 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.62 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 98.57 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.57 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.56 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.56 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.56 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.55 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.55 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.54 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.52 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.51 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.45 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.43 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.43 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.43 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.42 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.41 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.4 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.4 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.4 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 98.4 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.39 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.37 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.35 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.35 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 98.34 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.32 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.31 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.31 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.29 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.29 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.29 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.28 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.27 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.23 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.21 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.19 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.17 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.14 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.12 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.09 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.07 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.05 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.05 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 98.04 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.03 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.02 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.94 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.93 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.88 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.87 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.87 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 97.87 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.86 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.86 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.82 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.81 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.81 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.8 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.79 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.77 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.74 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.74 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 97.71 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.71 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.71 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.7 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.69 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.67 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.67 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.66 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.64 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.61 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.6 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.58 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.57 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.57 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.53 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.53 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.53 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.53 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.53 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.52 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.52 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.5 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.48 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.48 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.45 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.44 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.44 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.43 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.41 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.4 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.4 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.38 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.37 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.37 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.37 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 97.36 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.35 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.34 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.33 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.32 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.31 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.31 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.3 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.3 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.29 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.27 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.26 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.24 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.24 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 97.24 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.22 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.2 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.19 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.18 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.14 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.13 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.11 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.11 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.1 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.08 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.05 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.04 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.01 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.99 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 96.96 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.95 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 96.95 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.95 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 96.93 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.92 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.92 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 96.88 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.87 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 96.84 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.84 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.83 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.83 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.83 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 96.82 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.82 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 96.79 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 96.78 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.76 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.73 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.73 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.72 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.72 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.64 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.64 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.63 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.61 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.61 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.54 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.51 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.49 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.48 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.47 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.39 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.38 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.38 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.37 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.36 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.3 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.28 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 96.25 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.24 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.23 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.23 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.23 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.2 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.19 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.16 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.1 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.1 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 96.05 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.05 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.04 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.03 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 96.02 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 96.01 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 95.99 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.98 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.93 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.91 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.87 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.85 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.84 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.78 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.75 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.64 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.63 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.63 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.57 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 95.56 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.55 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.54 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.5 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 95.45 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.41 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.35 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.33 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.3 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 95.23 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 95.23 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 95.21 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 95.21 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 95.18 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.16 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.1 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.1 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 95.1 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.07 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 94.99 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 94.98 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 94.97 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 94.9 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.82 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 94.8 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 94.78 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.74 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.72 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 94.71 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.65 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.6 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 94.59 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 94.58 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.57 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.57 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.54 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 94.54 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.51 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 94.51 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.51 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.47 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.47 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.44 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 94.44 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 94.43 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.35 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 94.34 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.31 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 94.3 | |
| PLN02602 | 350 | lactate dehydrogenase | 94.28 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.24 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.24 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 94.21 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.2 | |
| PLN00106 | 323 | malate dehydrogenase | 94.17 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.14 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.11 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 94.08 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 94.07 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 94.02 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.0 | |
| PRK07411 | 390 | hypothetical protein; Validated | 93.99 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 93.96 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 93.93 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.91 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.88 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.87 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 93.87 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.85 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.79 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 93.77 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 93.77 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.71 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.68 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 93.65 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 93.65 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 93.59 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 93.46 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.42 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.41 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 93.38 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 93.35 | |
| KOG4230 | 935 | consensus C1-tetrahydrofolate synthase [Coenzyme t | 93.34 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 93.3 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.27 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.24 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 93.24 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 93.23 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 93.2 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.17 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.14 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 93.14 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 93.11 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 93.1 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 93.07 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 93.05 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 93.04 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 93.0 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 92.94 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 92.93 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 92.88 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 92.88 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 92.86 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 92.83 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 92.82 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 92.81 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 92.8 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 92.79 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 92.79 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 92.75 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.74 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.72 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 92.71 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 92.71 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 92.71 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 92.67 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.66 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 92.65 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 92.6 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.59 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 92.54 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 92.51 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.49 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 92.44 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 92.25 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 92.09 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 92.08 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 92.06 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.95 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 91.93 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 91.89 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 91.83 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 91.83 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 91.82 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.82 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 91.82 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 91.79 | |
| cd00257 | 119 | Fascin Fascin-like domain; members include actin-b | 91.75 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 91.71 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 91.67 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 91.65 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 91.63 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 91.52 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.51 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.49 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 91.44 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 91.41 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.39 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 91.37 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 91.31 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 91.28 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 91.22 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 91.21 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 91.17 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 91.09 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.02 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 91.0 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 90.88 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 90.81 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 90.79 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 90.72 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 90.68 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 90.61 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 90.59 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 90.56 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 90.55 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.55 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 90.53 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 90.42 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 90.41 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 90.41 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 90.3 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.25 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 90.17 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 90.16 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 90.16 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 89.94 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 89.91 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 89.88 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 89.87 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 89.85 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 89.83 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 89.83 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.8 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 89.8 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 89.78 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 89.78 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 89.74 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 89.7 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 89.63 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 89.39 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 89.32 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 89.31 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 89.22 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 89.22 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.16 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.01 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 88.98 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 88.9 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 88.84 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 88.79 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 88.73 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 88.72 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 88.7 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 88.64 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 88.63 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 88.58 | |
| PF05222 | 136 | AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal | 88.55 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 88.43 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 88.38 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 88.37 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 88.35 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 88.24 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 88.2 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 88.19 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 88.17 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 88.12 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 88.09 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 87.94 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 87.93 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 87.87 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 87.83 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 87.75 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 87.74 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 87.73 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 87.66 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 87.65 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 87.54 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 87.37 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.34 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 87.26 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 87.24 | |
| COG0540 | 316 | PyrB Aspartate carbamoyltransferase, catalytic cha | 87.19 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.17 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 87.16 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 87.12 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 86.99 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 86.99 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 86.97 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 86.95 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 86.89 |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=531.23 Aligned_cols=281 Identities=25% Similarity=0.351 Sum_probs=255.7
Q ss_pred ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhc
Q 006758 54 DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT 133 (632)
Q Consensus 54 e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl 133 (632)
.+.+.++|++++ +.++++++++..+|+||+|++.|+|+||||+++++++||.|+|+|++|+.+||||+++++|+++|++
T Consensus 40 ~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~ 118 (324)
T COG0111 40 LEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRI 118 (324)
T ss_pred HhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCc
Confidence 356889999888 8889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHH
Q 006758 134 HLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN 213 (632)
Q Consensus 134 ~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~ 213 (632)
+.++..+ +++.|.... ....+|+|+||||||+|+||+.+|++|++|||+|++|||+..... ....+....++|+
T Consensus 119 ~~~~~~~-~~g~W~~~~----~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~-~~~~~~~~~~~Ld 192 (324)
T COG0111 119 PDADASQ-RRGEWDRKA----FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRER-AGVDGVVGVDSLD 192 (324)
T ss_pred hhhHHHH-HcCCccccc----cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhh-hccccceecccHH
Confidence 9999885 899998621 233589999999999999999999999999999999999654432 2234566678999
Q ss_pred HHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCcccc
Q 006758 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVR 292 (632)
Q Consensus 214 eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~ 292 (632)
++|++||||++|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|||
T Consensus 193 ~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~ 272 (324)
T COG0111 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLW 272 (324)
T ss_pred HHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 777789999
Q ss_pred CCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC---CCccccCCcCc
Q 006758 293 EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI---PKNAISDTEGC 342 (632)
Q Consensus 293 ~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~---p~nvVn~~~~~ 342 (632)
.+|||++|||+|+.|.++++++...+++|+.+|+ .|.. +.+.|+..++|
T Consensus 273 ~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l-~g~~~~~~~~~v~~~~~~ 324 (324)
T COG0111 273 DLPNVILTPHIGGSTDEAQERVAEIVAENIVRYL-AGGPVVNNAPEVDLERGY 324 (324)
T ss_pred cCCCeEECCcccccCHHHHHHHHHHHHHHHHHHH-cCCCCCCCccccccccCC
Confidence 9999999999999999999999999999999996 7776 45556655554
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=522.25 Aligned_cols=315 Identities=30% Similarity=0.390 Sum_probs=270.2
Q ss_pred CCEEEEeCCCCCCchHHhhccCCceEEecCCC--CCc--ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCc
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG--RLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~--~l~--e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~ 94 (632)
|+.++....++. ...+.|....++..+... ..+ .+.+++++++++....+++.++++++|+||+|+..|+||||
T Consensus 2 k~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~ 79 (324)
T COG1052 2 KIVVLSTRKLPP--EVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDN 79 (324)
T ss_pred CcEEEecCcCCH--HHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCc
Confidence 556555544332 244555555565555432 222 45688999999887779999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhh
Q 006758 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174 (632)
Q Consensus 95 VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG 174 (632)
||+++|+++||.|+|+|++++++||||+|+|||++.|++..+++. .+.+.|.....+....+.+++|||+||||+|+||
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~-~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG 158 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRR-VREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIG 158 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHH-HhcCcccccCCcccccccCCCCCEEEEECCCHHH
Confidence 999999999999999999999999999999999999999999997 6899997653122223468999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 175 ~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
+++|+++++|||+|+|||+++. .+.+...+..++ +|++++++||+|++|||+|++|+||||++.|++||+|++|||+|
T Consensus 159 ~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 159 QAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred HHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 9999999999999999999975 222222334444 49999999999999999999999999999999999999999999
Q ss_pred CChhhcHHHHHHHHHcCCcceEEeecCCCCCC-CCccccCCCc---EEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVREMPN---VLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 255 RG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~-~~~pL~~~pN---VIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
||++||++||++||++|+|+||+|||||++|. .++||+.++| |++|||+|++|.+++.+|...+++|+..|+ +|.
T Consensus 237 RG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~-~g~ 315 (324)
T COG1052 237 RGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFF-DGG 315 (324)
T ss_pred CccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999998554 6899998888 999999999999999999999999999997 777
Q ss_pred CCCccccCC
Q 006758 331 IPKNAISDT 339 (632)
Q Consensus 331 ~p~nvVn~~ 339 (632)
.|.+.|+++
T Consensus 316 ~~~~~v~~~ 324 (324)
T COG1052 316 VPPNEVNPE 324 (324)
T ss_pred CCCCCCCCC
Confidence 899998863
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-63 Score=520.67 Aligned_cols=314 Identities=25% Similarity=0.301 Sum_probs=267.3
Q ss_pred CCCEEEEeCCCCCCchHHhhccCCceEEecCC-CCCc----ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGVALVEHVPL-GRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~-~~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
++|+|++...+. ....+.|+...++..++. ...+ .+.+.++|++++.. .++++++++++|+||+|++.|+|+
T Consensus 1 ~~~~vl~~~~~~--~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~p~Lk~I~~~g~G~ 77 (323)
T PRK15409 1 MKPSVILYKALP--DDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKMPKLRAASTISVGY 77 (323)
T ss_pred CCceEEEeCCCC--HHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhCCCCeEEEECceec
Confidence 357888887653 223445655555544431 1111 24577899988754 489999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCCh
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (632)
|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++. .+++.|.......+ ...+|.|+||||||+|+
T Consensus 78 d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~-~~~g~w~~~~~~~~-~g~~L~gktvGIiG~G~ 155 (323)
T PRK15409 78 DNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAER-VKAGEWTASIGPDW-FGTDVHHKTLGIVGMGR 155 (323)
T ss_pred ccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHH-HHcCCCcccCcccc-ccCCCCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999998887 58899964321111 23689999999999999
Q ss_pred hhHHHHHHHh-hCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEE
Q 006758 173 SARALATRSL-SFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (632)
Q Consensus 173 IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI 251 (632)
||+.+|++++ +|||+|++||++..... ....+. .+.+|++++++||+|++|||+|++|++|||++.|++||+|++||
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEA-EERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI 233 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhh-HHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 9999999998 99999999998753321 111233 34699999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 252 NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
|+|||++||++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.+++.++...+++||.+|+ .|+
T Consensus 234 N~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~ 312 (323)
T PRK15409 234 NAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDAL-QGK 312 (323)
T ss_pred ECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999999999999999987 6678899999999999999999999999999999999999997 788
Q ss_pred CCCccccCC
Q 006758 331 IPKNAISDT 339 (632)
Q Consensus 331 ~p~nvVn~~ 339 (632)
.|.|+||++
T Consensus 313 ~~~~~vn~~ 321 (323)
T PRK15409 313 VEKNCVNPQ 321 (323)
T ss_pred CCCcccCcc
Confidence 899999864
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-62 Score=509.68 Aligned_cols=300 Identities=21% Similarity=0.296 Sum_probs=254.5
Q ss_pred EEEeCCCCCCchHHhhccCCceEEecCCC--CCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHH
Q 006758 22 VVALNCIEDCVLEQDSLAGVALVEHVPLG--RLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSAL 99 (632)
Q Consensus 22 VvvL~~~e~~~~e~e~L~~laeV~~~~~~--~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~a 99 (632)
|++++.........+.|+...++..++.. +...+.+.++|+++++ ..++++++++++|+||+|+++|+|+|+||+++
T Consensus 3 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~ 81 (311)
T PRK08410 3 IVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIEY 81 (311)
T ss_pred EEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHHH
Confidence 55555422223344566665555544321 1123467889988776 45899999999999999999999999999999
Q ss_pred HHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCC--CCccccccCcEEEEEeCChhhHHH
Q 006758 100 AADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL--CRGMRRCRGLVLGIVGRSASARAL 177 (632)
Q Consensus 100 a~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~--~~~~~~L~GktVGIIGlG~IG~~v 177 (632)
|+++||.|+|+||+++++||||++++||+++|++..+++. .+++.|....... ...+++|.|+||||||+|+||+.+
T Consensus 82 ~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~v 160 (311)
T PRK08410 82 AKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY-VKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRV 160 (311)
T ss_pred HHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999999999999998887 5889997432111 112468999999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 178 A~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
|+++++|||+|++|||+..... .+ ..+.+|++++++||||++|||+|++|+||||++.|++||||++|||+|||+
T Consensus 161 A~~~~~fgm~V~~~d~~~~~~~----~~-~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~ 235 (311)
T PRK08410 161 AKIAQAFGAKVVYYSTSGKNKN----EE-YERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235 (311)
T ss_pred HHHHhhcCCEEEEECCCccccc----cC-ceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence 9999999999999999753321 12 235699999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCC---CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM---PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 258 iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~---pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
+||++||++||++|+|+ |+||||++ |++.++|||.+ ||||+|||+||+|.++..++...+++||.+|+ +|+
T Consensus 236 vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~-~g~ 310 (311)
T PRK08410 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFL-EGG 310 (311)
T ss_pred ccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHH-cCC
Confidence 99999999999999999 99999997 77788999986 89999999999999999999999999999997 554
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-61 Score=505.19 Aligned_cols=273 Identities=28% Similarity=0.376 Sum_probs=244.0
Q ss_pred ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhc
Q 006758 54 DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRT 133 (632)
Q Consensus 54 e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl 133 (632)
.+.+.++|+++++. .++++++++++|+||+|+++|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|++
T Consensus 40 ~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~ 118 (317)
T PRK06487 40 AERLRGAQVAISNK-VALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRL 118 (317)
T ss_pred HHHhCCCeEEEEeC-CCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCH
Confidence 35678899887663 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCC--CCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCC
Q 006758 134 HLLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (632)
Q Consensus 134 ~~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~s 211 (632)
..+++. .+++.|...... .....++|.|+||||||+|+||+.+|+++++|||+|++||++.... . ....+
T Consensus 119 ~~~~~~-~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~------~-~~~~~ 190 (317)
T PRK06487 119 PDYQQA-VAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA------R-PDRLP 190 (317)
T ss_pred HHHHHH-HHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc------c-ccccC
Confidence 999887 588999753211 0112358999999999999999999999999999999999864321 1 12358
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCcc
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAW 290 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~p 290 (632)
|++++++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|
T Consensus 191 l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~p 270 (317)
T PRK06487 191 LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNP 270 (317)
T ss_pred HHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 6677889
Q ss_pred ccC--CCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006758 291 VRE--MPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 291 L~~--~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
||. +|||++|||+||+|.+++.++...+++||.+|+ .|+ |.++||
T Consensus 271 l~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~-~~~~v~ 317 (317)
T PRK06487 271 LLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFF-AGK-PLRVVS 317 (317)
T ss_pred hhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHH-cCC-CCcCCC
Confidence 995 899999999999999999999999999999996 776 667664
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-61 Score=507.47 Aligned_cols=316 Identities=23% Similarity=0.270 Sum_probs=266.6
Q ss_pred CCCEEEEeCCCCCCchHHhhccCCceEEecCCC-CCc----ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~-~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
++|+|++...++ ....+.|+...++..++.. ... .+.+.++|++++....++++++++++|+||||+++|+|+
T Consensus 1 ~~~kil~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~ 78 (333)
T PRK13243 1 MKPKVFITREIP--ENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY 78 (333)
T ss_pred CCceEEEECCCC--HHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence 357787776542 2223455554455443211 111 245788999888766689999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCC---CCCCCccccccCcEEEEEe
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV---QPLCRGMRRCRGLVLGIVG 169 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~---~~~~~~~~~L~GktVGIIG 169 (632)
||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++. .+.+.|.... .+....+++|.|++|||||
T Consensus 79 d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG 157 (333)
T PRK13243 79 DNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHF-VRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIG 157 (333)
T ss_pred cccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCccccccccccccccCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999998887 5889997431 1111123689999999999
Q ss_pred CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcE
Q 006758 170 RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 170 lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
+|+||+.+|++|++|||+|++||++..... ....+. ...++++++++||+|++|+|+|++|+++|+++.|+.||+|++
T Consensus 158 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~ 235 (333)
T PRK13243 158 FGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGA-EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAI 235 (333)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCC-EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeE
Confidence 999999999999999999999999764321 112222 346899999999999999999999999999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Q 006758 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G 329 (632)
|||+|||++||++||+++|++|+|+||+||||++||++++|||++||||+|||+||+|.++..++...+++||.+|+ +|
T Consensus 236 lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g 314 (333)
T PRK13243 236 LVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFK-RG 314 (333)
T ss_pred EEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHH-cC
Confidence 99999999999999999999999999999999984445899999999999999999999999999999999999996 88
Q ss_pred CCCCccccCC
Q 006758 330 VIPKNAISDT 339 (632)
Q Consensus 330 ~~p~nvVn~~ 339 (632)
+.|.|+||++
T Consensus 315 ~~~~~~v~~~ 324 (333)
T PRK13243 315 EVPPTLVNRE 324 (333)
T ss_pred CCCCcccCHH
Confidence 8899999853
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=499.18 Aligned_cols=268 Identities=25% Similarity=0.387 Sum_probs=239.5
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.++++|++++. ..++++++++++|+||+|++.|+|+|+||+++|.++||.|+|+||+++.+||||++++||+++|++.
T Consensus 40 ~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~ 118 (314)
T PRK06932 40 ERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLM 118 (314)
T ss_pred HHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChH
Confidence 467889987764 4589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCC--CCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH
Q 006758 135 LLARHALSASGWLGSVQP--LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~--~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (632)
.+++. .+.+.|...... ....+.+|+|+||||||+|.||+.+|+++++|||+|++||+..... .. ..+.+|
T Consensus 119 ~~~~~-~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~---~~---~~~~~l 191 (314)
T PRK06932 119 GWYRD-QLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV---CR---EGYTPF 191 (314)
T ss_pred HHHHH-HHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc---cc---cccCCH
Confidence 98887 478899643211 0112368999999999999999999999999999999999764211 11 124689
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccc
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL 291 (632)
++++++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++||
T Consensus 192 ~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl 271 (314)
T PRK06932 192 EEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPL 271 (314)
T ss_pred HHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 77788999
Q ss_pred c----CCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 292 R----EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 292 ~----~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
| ++|||++|||+||+|.+++.++...+++||.+|+..|+
T Consensus 272 ~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 272 IQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred hHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8 59999999999999999999999999999999986553
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=509.47 Aligned_cols=310 Identities=26% Similarity=0.297 Sum_probs=264.0
Q ss_pred CCCEEEEeCCCCCCchHHhhccCC-c-eEEecCCCC---CcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGV-A-LVEHVPLGR---LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~l-a-eV~~~~~~~---l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
.+.+|++++.+. +...+.|... . ++...+... ...+.+.++|++++.+..++++++++++|+||+|+++|+|+
T Consensus 9 ~~~~ili~~~~~--~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 86 (409)
T PRK11790 9 DKIKFLLLEGVH--QSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGT 86 (409)
T ss_pred CCeEEEEECCCC--HHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceec
Confidence 345677776432 2233445432 2 555443211 11246788999887777789999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCCh
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (632)
||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++. .+.+.|.... ..+++|.|+||||||+|+
T Consensus 87 d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~-~~~g~w~~~~----~~~~~L~gktvGIiG~G~ 161 (409)
T PRK11790 87 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAK-AHRGGWNKSA----AGSFEVRGKTLGIVGYGH 161 (409)
T ss_pred ccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHH-HHcCcccccc----cCcccCCCCEEEEECCCH
Confidence 99999999999999999999999999999999999999999998887 5789997532 123689999999999999
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEE
Q 006758 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (632)
Q Consensus 173 IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLIN 252 (632)
||+.+|+++++|||+|++||++..... .+.....+|++++++||+|++|||+|++|+||||++.|++||+|++|||
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~~~----~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN 237 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKLPL----GNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILIN 237 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCccccc----CCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEE
Confidence 999999999999999999998743211 1234456999999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCC----CccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 006758 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWM----EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 253 vgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~----~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
+|||++||++||++||++|+|+||+||||++ |++. ++|||.+|||++|||+||+|.+++.++...+++|+.+|+
T Consensus 238 ~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~- 316 (409)
T PRK11790 238 ASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYS- 316 (409)
T ss_pred CCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999987 5444 469999999999999999999999999999999999997
Q ss_pred cCCCCCccccCC
Q 006758 328 DGVIPKNAISDT 339 (632)
Q Consensus 328 ~G~~p~nvVn~~ 339 (632)
.|..+.+.||..
T Consensus 317 ~~~~~~~~vn~~ 328 (409)
T PRK11790 317 DNGSTLSAVNFP 328 (409)
T ss_pred cCCCcCcceecc
Confidence 666788999965
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=505.14 Aligned_cols=321 Identities=20% Similarity=0.207 Sum_probs=265.6
Q ss_pred CCCCCEEEEeCCCCCCchHHhhccCC-ceEEecCC-C-CCc----cccc-ccceEEEEecCCCCCHHHHhcCCC--ceEE
Q 006758 16 PTPLPSVVALNCIEDCVLEQDSLAGV-ALVEHVPL-G-RLA----DGKI-EAAAAVLLHSLAYLPRAAQRRLRP--YQLI 85 (632)
Q Consensus 16 ~~~kP~VvvL~~~e~~~~e~e~L~~l-aeV~~~~~-~-~l~----e~~i-~dAdaIli~s~~~L~~evL~~lp~--LK~I 85 (632)
+-.+++|++...++... ..+.|+.. .++..+.. . ..+ .+.+ +++|++++....++++++++++++ ||+|
T Consensus 12 ~~~~~~v~~~~~~~~~~-~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I 90 (386)
T PLN02306 12 PNGKYRVVSTKPMPGTR-WINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAF 90 (386)
T ss_pred CCCCceEEEeCCCCcHH-HHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEE
Confidence 44578888887653211 23445543 35543321 1 122 2344 468888887667899999999996 6999
Q ss_pred EEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEE
Q 006758 86 LCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVL 165 (632)
Q Consensus 86 ~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktV 165 (632)
+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++..+++. ++.+.|...... .....+|.|+||
T Consensus 91 ~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~-~~~g~w~~~~~~-~~~g~~L~gktv 168 (386)
T PLN02306 91 SNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF-MRAGLYEGWLPH-LFVGNLLKGQTV 168 (386)
T ss_pred EECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHH-HHcCCCcccccc-ccCCcCCCCCEE
Confidence 999999999999999999999999999999999999999999999999998887 477878532111 112357999999
Q ss_pred EEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCc----ccc----------cCceecCCHHHHhccCCEEEEccCCCh
Q 006758 166 GIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKV----TFP----------SAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 166 GIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~----~~~----------~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
||||+|.||+.+|++++ +|||+|++||++...... .+. .......+|++++++||||++|||+|+
T Consensus 169 GIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~ 248 (386)
T PLN02306 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDK 248 (386)
T ss_pred EEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999985 999999999988642110 000 011224689999999999999999999
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHH
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEV 310 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea 310 (632)
+|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.+++||++|||++|||+||+|.++
T Consensus 249 ~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~ 328 (386)
T PLN02306 249 TTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWT 328 (386)
T ss_pred hhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHH
Confidence 99999999999999999999999999999999999999999999999999998666678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 311 WMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 311 ~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
+.++...+++||.+|+ +|+.+.|.||+.+
T Consensus 329 ~~~~~~~~~~ni~~~~-~g~~~~~~~~~~~ 357 (386)
T PLN02306 329 REGMATLAALNVLGKL-KGYPVWGDPNRVE 357 (386)
T ss_pred HHHHHHHHHHHHHHHH-cCCCCcccccchh
Confidence 9999999999999996 8999999999664
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=504.68 Aligned_cols=308 Identities=22% Similarity=0.284 Sum_probs=261.2
Q ss_pred EeCCCCCCchHHhhccCC-ceEEecCCCC----CcccccccceEEEEec--CCCCCHHHHhcCCCceEEEEecccCCccc
Q 006758 24 ALNCIEDCVLEQDSLAGV-ALVEHVPLGR----LADGKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVD 96 (632)
Q Consensus 24 vL~~~e~~~~e~e~L~~l-aeV~~~~~~~----l~e~~i~dAdaIli~s--~~~L~~evL~~lp~LK~I~~~gaG~D~VD 96 (632)
++.|..........|+.. .++....... ...+.+.++|++++.. ..++++++++++|+||||+++|+|+||||
T Consensus 50 ~~~~~~~~~~~~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id 129 (385)
T PRK07574 50 LLGSVSGELGLRKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVD 129 (385)
T ss_pred eeeeccChhhHHHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCccccccc
Confidence 344544433334455554 3454433221 2235688999988764 35799999999999999999999999999
Q ss_pred hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHH
Q 006758 97 SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176 (632)
Q Consensus 97 ~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~ 176 (632)
+++|.++||.|+|++++++.+||||++++||+++|++..+++. .+.+.|..... ....++|.|++|||||+|+||+.
T Consensus 130 ~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~-~~~g~W~~~~~--~~~~~~L~gktVGIvG~G~IG~~ 206 (385)
T PRK07574 130 LQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ-AVEGGWNIADC--VSRSYDLEGMTVGIVGAGRIGLA 206 (385)
T ss_pred HHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHH-HHhCCCCcccc--cccceecCCCEEEEECCCHHHHH
Confidence 9999999999999999999999999999999999999998887 57899975311 11246899999999999999999
Q ss_pred HHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 177 vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
+|++|++|||+|++||++..........++..+.+++++++.||||++|||+|++|++|||++.|++||+|++|||+|||
T Consensus 207 vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 286 (385)
T PRK07574 207 VLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARG 286 (385)
T ss_pred HHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCC
Confidence 99999999999999999863322112234455679999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNA 335 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nv 335 (632)
++||++||++||++|+|+||+||||++ |++.++|||.+|||++|||+||+|.+++.++...+++||.+|+ +|+.+.|.
T Consensus 287 ~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~-~G~~~~~~ 365 (385)
T PRK07574 287 KIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFF-EGRPIRDE 365 (385)
T ss_pred chhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHH-cCCCCCCC
Confidence 999999999999999999999999997 7788999999999999999999999999999999999999997 77766554
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=502.43 Aligned_cols=285 Identities=21% Similarity=0.282 Sum_probs=253.3
Q ss_pred cccccceEEEEec--CCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 006758 55 GKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (632)
Q Consensus 55 ~~i~dAdaIli~s--~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rr 132 (632)
+.+.++|++++.. ..++++++++++|+||||++.|+|+||||+++|.++||.|+|++|+|+.+||||++++||+++|+
T Consensus 93 ~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~ 172 (386)
T PLN03139 93 KHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRN 172 (386)
T ss_pred HHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcC
Confidence 5678999988764 24799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH
Q 006758 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (632)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (632)
+..+++. .+++.|..... ....++|.|++|||||+|+||+.+|++|++|||+|++||++..........++...++|
T Consensus 173 ~~~~~~~-~~~g~W~~~~~--~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l 249 (386)
T PLN03139 173 FLPGYHQ-VVSGEWNVAGI--AYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDL 249 (386)
T ss_pred cHHHHHH-HHhCCCccccc--cCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCH
Confidence 9998887 47899974211 12236899999999999999999999999999999999998533221222344556799
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccc
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL 291 (632)
++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++||
T Consensus 250 ~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL 329 (386)
T PLN03139 250 DAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPW 329 (386)
T ss_pred HHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 77889999
Q ss_pred cCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC--CCCccccCCcCcc
Q 006758 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV--IPKNAISDTEGCE 343 (632)
Q Consensus 292 ~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~--~p~nvVn~~~~~~ 343 (632)
|.+|||++|||+||.|.+++.++...+++||.+|+ +|+ .|.++|...-.|.
T Consensus 330 ~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~-~G~~~~~~~~i~~~~~~~ 382 (386)
T PLN03139 330 RYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYF-KGEDFPAQNYIVKEGKLA 382 (386)
T ss_pred hcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHH-cCCCCCCcceeecCCccc
Confidence 99999999999999999999999999999999997 665 3667777666564
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-59 Score=495.61 Aligned_cols=312 Identities=22% Similarity=0.222 Sum_probs=260.0
Q ss_pred CCCCCCEEEEeCCCCCC--chHHhhccCCceEEecC-CCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEeccc
Q 006758 15 NPTPLPSVVALNCIEDC--VLEQDSLAGVALVEHVP-LGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSS 91 (632)
Q Consensus 15 ~~~~kP~VvvL~~~e~~--~~e~e~L~~laeV~~~~-~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG 91 (632)
+.+++|+|+++....+. ....+.++.+..+.... ..+...+.+.++|+++++ ..++++++++.+|+||||++.++|
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G 92 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVG 92 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCcc
Confidence 45678888888764332 22345555443222211 111123457889987765 348999999999999999999999
Q ss_pred CCccchHHHHhcCcEEEEcCCC---ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEE
Q 006758 92 DRTVDSALAADLGLRLIHVDTS---RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIV 168 (632)
Q Consensus 92 ~D~VD~~aa~erGI~VtNvpg~---na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGII 168 (632)
+|+||+++|.++||.|+|+|++ ++.+||||+++++|+++|++..+.+. .+.+.|... ...+|.|+|||||
T Consensus 93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~-~~~~~w~~~------~~~~l~gktvGIi 165 (347)
T PLN02928 93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQIS-LKARRLGEP------IGDTLFGKTVFIL 165 (347)
T ss_pred cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCcccc------cccCCCCCEEEEE
Confidence 9999999999999999999986 78999999999999999999988877 477889531 1257999999999
Q ss_pred eCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 169 GRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 169 GlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
|+|.||+.+|++|++|||+|++|||+....... +........+|++++++||||++|||+|++|++||+
T Consensus 166 G~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~ 245 (347)
T PLN02928 166 GYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVN 245 (347)
T ss_pred CCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccC
Confidence 999999999999999999999999974321100 000011457999999999999999999999999999
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~ 316 (632)
++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++|||++|||++|||+|++|.+++.++..
T Consensus 246 ~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~ 325 (347)
T PLN02928 246 DEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGK 325 (347)
T ss_pred HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcc
Q 006758 317 KAISVLQTFFFDGVIPKNA 335 (632)
Q Consensus 317 ~a~~nL~~fL~~G~~p~nv 335 (632)
.+++||.+|+ .|+++.|+
T Consensus 326 ~~~~nl~~~~-~g~~~~~~ 343 (347)
T PLN02928 326 IVGDAALQLH-AGRPLTGI 343 (347)
T ss_pred HHHHHHHHHH-CCCCCCce
Confidence 9999999996 78766553
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-58 Score=510.25 Aligned_cols=279 Identities=22% Similarity=0.282 Sum_probs=254.4
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.+.++|++++++.+++++++++++|+||||+++|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|+++
T Consensus 36 ~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~ 115 (525)
T TIGR01327 36 EIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIP 115 (525)
T ss_pred HHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHH
Confidence 56789999998877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
.+++. .+++.|.+.. ....+|.|+||||||+|+||+.+|++|++|||+|++||++..... ....+....++|++
T Consensus 116 ~~~~~-~~~g~W~~~~----~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~~~g~~~~~~l~e 189 (525)
T TIGR01327 116 QADAS-LKEGEWDRKA----FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER-AEQLGVELVDDLDE 189 (525)
T ss_pred HHHHH-HHcCCccccc----cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHhcCCEEcCCHHH
Confidence 99887 5789997431 123579999999999999999999999999999999998743221 22234444568999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCC
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~ 294 (632)
++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+.++|||++
T Consensus 190 ll~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~ 269 (525)
T TIGR01327 190 LLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDL 269 (525)
T ss_pred HHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866779999999
Q ss_pred CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 295 pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
|||++|||+|++|.+++.++...+++|+.+|+ .|+.+.|.||...
T Consensus 270 ~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~-~g~~~~~~vn~~~ 314 (525)
T TIGR01327 270 DNVIATPHLGASTREAQENVATQVAEQVLDAL-KGLPVPNAVNAPG 314 (525)
T ss_pred CCeEECCCccccHHHHHHHHHHHHHHHHHHHH-cCCCCCceeeCCC
Confidence 99999999999999999999999999999996 7888999999775
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-57 Score=501.89 Aligned_cols=278 Identities=24% Similarity=0.311 Sum_probs=252.4
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.+.++|++++++.+++++++++++|+||||+++|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|+++
T Consensus 38 ~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~ 117 (526)
T PRK13581 38 EIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIP 117 (526)
T ss_pred HHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHH
Confidence 45788999998877789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
.+++. .+++.|.+.. ....+|.|+||||||+|+||+.+|++|++|||+|++||++..... ....+.... ++++
T Consensus 118 ~~~~~-~~~g~W~~~~----~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~~~g~~~~-~l~e 190 (526)
T PRK13581 118 QAHAS-LKAGKWERKK----FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER-AAQLGVELV-SLDE 190 (526)
T ss_pred HHHHH-HHcCCCCccC----ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-HHhcCCEEE-cHHH
Confidence 99887 5789997531 123579999999999999999999999999999999998753221 122334443 8999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCC
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~ 294 (632)
++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||+++|+.++|||++
T Consensus 191 ll~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~ 270 (526)
T PRK13581 191 LLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFEL 270 (526)
T ss_pred HHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999855569999999
Q ss_pred CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 295 pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
|||++|||+|++|.+++.++...+++|+.+|+ +|+.+.|+||...
T Consensus 271 ~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~-~g~~~~~~vn~~~ 315 (526)
T PRK13581 271 PNVVVTPHLGASTAEAQENVAIQVAEQVIDAL-RGGPVPNAVNLPS 315 (526)
T ss_pred CCeeEcCccccchHHHHHHHHHHHHHHHHHHH-cCCCcCceeeCCC
Confidence 99999999999999999999999999999996 7888999999765
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-56 Score=467.65 Aligned_cols=275 Identities=19% Similarity=0.247 Sum_probs=243.0
Q ss_pred ccccccceEEEEecCCCCCHHHHhcCC--CceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHh
Q 006758 54 DGKIEAAAAVLLHSLAYLPRAAQRRLR--PYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131 (632)
Q Consensus 54 e~~i~dAdaIli~s~~~L~~evL~~lp--~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~R 131 (632)
.+.+.++|++++....++++++++++| +||+|++.|+|+|+||+++|+++||.|+|+|++++++||||++++||+++|
T Consensus 40 ~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R 119 (330)
T PRK12480 40 VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVR 119 (330)
T ss_pred HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHH
Confidence 356788999988876689999999997 899999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCC
Q 006758 132 RTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (632)
Q Consensus 132 rl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~s 211 (632)
++..+++. .+.+.|.... + ...++|+|++|||||+|.||+.+|++|++|||+|++||++...... ......+
T Consensus 120 ~~~~~~~~-~~~~~~~w~~-~--~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~~~~~~ 191 (330)
T PRK12480 120 RFPDIERR-VQAHDFTWQA-E--IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FLTYKDS 191 (330)
T ss_pred hHHHHHHH-HHhCCccccc-c--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hhhccCC
Confidence 99988876 4666553111 1 1235799999999999999999999999999999999988643221 1223458
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCC-----
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW----- 286 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~----- 286 (632)
+++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||.+||++||++||++|+|+||+||||++||+
T Consensus 192 l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~ 271 (330)
T PRK12480 192 VKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTND 271 (330)
T ss_pred HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997442
Q ss_pred ---------CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006758 287 ---------MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 287 ---------~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
..+|||++|||++|||+|++|.+++.++.+.+++|+.+|+ .|+.+.+.||
T Consensus 272 ~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~-~~~~~~~~~~ 330 (330)
T PRK12480 272 WTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVI-NTGTCETRLN 330 (330)
T ss_pred ccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHH-hCCCCcccCC
Confidence 1147999999999999999999999999999999999997 6666888776
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=462.00 Aligned_cols=310 Identities=19% Similarity=0.267 Sum_probs=270.0
Q ss_pred EEEEeCCCCCCchHHhhccCCc-eEEecCCC--CCcccccccceEEEEecCCCCCHHHHh-cCCCceEEEEecccCCccc
Q 006758 21 SVVALNCIEDCVLEQDSLAGVA-LVEHVPLG--RLADGKIEAAAAVLLHSLAYLPRAAQR-RLRPYQLILCLGSSDRTVD 96 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~la-eV~~~~~~--~l~e~~i~dAdaIli~s~~~L~~evL~-~lp~LK~I~~~gaG~D~VD 96 (632)
+|++++.++... .+.|++.. ++...... +..-..++++|++++++.+++++++++ ...+||+|.+.|+|+||||
T Consensus 8 ~il~~e~~~~~~--~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 8 KILVAESLDQAC--IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred eEEEecccchHH--HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 788887765433 34556543 44444321 122356889999999999999999999 6677999999999999999
Q ss_pred hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHH
Q 006758 97 SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176 (632)
Q Consensus 97 ~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~ 176 (632)
+.+|+++||.|+|+|.+|+.++||+++++|++|+|++++.... ++.|.|.+.. ..+.+|+|||+||+|+|+||+.
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s-~k~g~wnr~~----~~G~el~GKTLgvlG~GrIGse 160 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASAS-MKEGKWNRVK----YLGWELRGKTLGVLGLGRIGSE 160 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhhee-eecCceeecc----eeeeEEeccEEEEeecccchHH
Confidence 9999999999999999999999999999999999999988776 6999998653 2347899999999999999999
Q ss_pred HHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 177 vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
+|++++++||+|++||+...... ....|++ ..+++|+++.||||++|||+||+|++|||.+.|++||+|..+||++||
T Consensus 161 VA~r~k~~gm~vI~~dpi~~~~~-~~a~gvq-~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 161 VAVRAKAMGMHVIGYDPITPMAL-AEAFGVQ-LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred HHHHHHhcCceEEeecCCCchHH-HHhccce-eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 99999999999999999865432 2223444 469999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCCCCCC---CccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWM---EAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~---~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~ 333 (632)
++||+.||++||++|+++|||||||++|||. ++.|-.+|||++|||+|+.|.|++.+++..+++++..|+ +| ...
T Consensus 239 GvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~-~~-~~~ 316 (406)
T KOG0068|consen 239 GVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYI-NG-NSA 316 (406)
T ss_pred ceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHh-cc-Ccc
Confidence 9999999999999999999999999986666 678999999999999999999999999999999999996 66 577
Q ss_pred ccccCCcC
Q 006758 334 NAISDTEG 341 (632)
Q Consensus 334 nvVn~~~~ 341 (632)
..||...-
T Consensus 317 g~Vna~~v 324 (406)
T KOG0068|consen 317 GSVNAPEV 324 (406)
T ss_pred ceechhhh
Confidence 88887654
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=455.60 Aligned_cols=270 Identities=18% Similarity=0.224 Sum_probs=235.8
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHH-----HHhcCcEEEEcCC-CChHHHHHHHHHHHHHHH
Q 006758 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSAL-----AADLGLRLIHVDT-SRAEEIADTVMALLLGLL 130 (632)
Q Consensus 57 i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~a-----a~erGI~VtNvpg-~na~aVAE~ALaliLal~ 130 (632)
.+++|+++++.. +.+++. .++||||++.|+|+|++|..+ +..+||.|+|+++ .++.+||||++++||+++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~ 111 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWF 111 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHH
Confidence 568899888753 567775 589999999999999998332 3358999999864 689999999999999999
Q ss_pred hhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecC
Q 006758 131 RRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD 210 (632)
Q Consensus 131 Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~ 210 (632)
|++..+... .+.+.|... ...++.|+||||||+|.||+.+|++|++|||+|++||++..... ... ......
T Consensus 112 r~~~~~~~~-~~~~~w~~~------~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-~~~-~~~~~~ 182 (312)
T PRK15469 112 RRFDDYQAL-QNSSHWQPL------PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-GVQ-SFAGRE 182 (312)
T ss_pred cChHHHHHH-HHhCCcCCC------CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-Cce-eecccc
Confidence 999988776 478899642 12468999999999999999999999999999999998764321 111 112346
Q ss_pred CHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCc
Q 006758 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEA 289 (632)
Q Consensus 211 sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~ 289 (632)
+|++++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++ |++.++
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~ 262 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPES 262 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999997 778889
Q ss_pred cccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCcCc
Q 006758 290 WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGC 342 (632)
Q Consensus 290 pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~~~ 342 (632)
|||.+|||++|||+|++|.+. ++...+++|+++|+ +|+.|.|+||+.+||
T Consensus 263 pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~-~g~~~~~~V~~~~gY 312 (312)
T PRK15469 263 PLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLE-KGERVCGQVDRARGY 312 (312)
T ss_pred hhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHH-cCCCCcccCCcccCC
Confidence 999999999999999999874 67889999999995 888999999999998
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=457.08 Aligned_cols=275 Identities=20% Similarity=0.242 Sum_probs=243.0
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--ceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rr 132 (632)
+.+.++|++++....++++++++++|+ ||+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~ 120 (332)
T PRK08605 41 EEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRH 120 (332)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcC
Confidence 467889999988778999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH-hhCCCEEEEECCCCCCCCcccccCceecCC
Q 006758 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS-LSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (632)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L-kafGm~V~~~dr~~~~~~~~~~~g~~~~~s 211 (632)
+..+++. .+++.|.... . ...++|.|++|||||+|.||+.+|++| ++|||+|++||++..... ........+
T Consensus 121 ~~~~~~~-~~~~~~~~~~-~--~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~ 193 (332)
T PRK08605 121 FNQIQTK-VREHDFRWEP-P--ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDT 193 (332)
T ss_pred hHHHHHH-HHhCCccccc-c--cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCC
Confidence 9998876 4677663111 1 123679999999999999999999999 789999999998764321 122333468
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC---CCC
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WME 288 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~---~~~ 288 (632)
+++++++||+|++|+|++++|+++++.+.|+.||+|++|||++||.++|+++|+++|++|+|+||+||||+.+| +.+
T Consensus 194 l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~ 273 (332)
T PRK08605 194 IEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSD 273 (332)
T ss_pred HHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998633 334
Q ss_pred c-----------cccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006758 289 A-----------WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 289 ~-----------pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
+ +||.+|||++|||+|++|.+++.++...+++|+.+|+ +|+...|.||
T Consensus 274 ~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~-~g~~~~~~~~ 332 (332)
T PRK08605 274 QRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVL-QTGTTRLRVN 332 (332)
T ss_pred cccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcC
Confidence 3 5999999999999999999999999999999999997 6766777765
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=462.87 Aligned_cols=280 Identities=22% Similarity=0.284 Sum_probs=248.6
Q ss_pred EEEEeCCCCCCchHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHH
Q 006758 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa 100 (632)
+|++.+.. ++..+.|..+.++.+.+...++.+.+.++|++++++.+++++++++ .++||||+++++|+||||++++
T Consensus 2 kI~~d~~~---p~~~~~~~~~~~v~~~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (381)
T PRK00257 2 KIVADENI---PLLDAFFAGFGEIRRLPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLDLDYF 77 (381)
T ss_pred EEEEecCc---hhHHHHHhhCCcEEEcCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccCHHHH
Confidence 46666543 4567778888888888877777778999999999988899999997 4899999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHH
Q 006758 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (632)
Q Consensus 101 ~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (632)
+++||.|+|+||+|+.+||||+++++|+++|+. ..+|.|+||||||+|+||+.+|++
T Consensus 78 ~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-----------------------g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 78 AEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-----------------------GVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred HHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-----------------------CCCcCcCEEEEECCCHHHHHHHHH
Confidence 999999999999999999999999999998751 135899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh----hhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD----ETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 181 LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~----~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
+++|||+|++||+...... +...+.+|++++++||+|++|+|+|+ .|+||||++.|++||+|++|||+|||
T Consensus 135 l~a~G~~V~~~Dp~~~~~~-----~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (381)
T PRK00257 135 LRGLGWKVLVCDPPRQEAE-----GDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRG 209 (381)
T ss_pred HHHCCCEEEEECCcccccc-----cCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCC
Confidence 9999999999998643211 12235689999999999999999999 59999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~n 334 (632)
++||++||+++|++|++.||+|||||+||..+++|+.. |||+|||+||+|.++..++...+++||.+|+ ++.....
T Consensus 210 ~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~-~~~~~~~ 285 (381)
T PRK00257 210 AVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFF-GIPARVS 285 (381)
T ss_pred cccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHH-cCCCccc
Confidence 99999999999999999999999999866678889985 9999999999999999999999999999996 6654443
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-54 Score=462.19 Aligned_cols=273 Identities=19% Similarity=0.297 Sum_probs=243.6
Q ss_pred EEEEeCCCCCCchHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHH
Q 006758 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa 100 (632)
+|++.+. .+...+.|+.+.++...+...++.+.+.++|++++++.+++++++++ .++||+|+++++|+||||++++
T Consensus 2 kIl~d~~---~~~~~~~~~~~~ev~~~~~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (378)
T PRK15438 2 KILVDEN---MPYARELFSRLGEVKAVPGRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEAWL 77 (378)
T ss_pred EEEEeCC---cchHHHHHhhcCcEEEeCCCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHHHH
Confidence 4666653 34666788887888888777777778999999999988899999986 6899999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHH
Q 006758 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (632)
Q Consensus 101 ~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (632)
+++||.|+|+||+|+.+||||++++||+++|+. . .+|.|+||||||+|+||+.+|++
T Consensus 78 ~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-----------g------------~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 78 KQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-----------G------------FSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-----------C------------CCcCCCEEEEECcCHHHHHHHHH
Confidence 999999999999999999999999999998851 1 24899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh----hHhhccHHHHhccCCCcEEEEcCCC
Q 006758 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 181 LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~----T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
|++|||+|++|||...... . ...+.+|++++++||||++|+|+|++ |+||||++.|++||+|++|||+|||
T Consensus 135 l~a~G~~V~~~dp~~~~~~----~-~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 209 (378)
T PRK15438 135 LEALGIKTLLCDPPRADRG----D-EGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRG 209 (378)
T ss_pred HHHCCCEEEEECCcccccc----c-ccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCc
Confidence 9999999999998643211 1 12356999999999999999999996 9999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHH
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL 326 (632)
++||++||+++|++|++.||+|||||+||..+++|+..+| |+|||+||+|.+...++...+++|+.+|+
T Consensus 210 ~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~ 278 (378)
T PRK15438 210 AVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI 278 (378)
T ss_pred hhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986667888887665 99999999999999999999999999997
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=444.51 Aligned_cols=274 Identities=26% Similarity=0.349 Sum_probs=239.2
Q ss_pred cccceEEEEe-cCCCCCHHHHhcC-CCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 57 IEAAAAVLLH-SLAYLPRAAQRRL-RPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 57 i~dAdaIli~-s~~~L~~evL~~l-p~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.+...++.+ .....+.+.+.++ |++|+|+++|+|+||||+++|++|||+|+|+|+.++++|||++++++|.++|++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~ 137 (336)
T KOG0069|consen 58 IADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFS 137 (336)
T ss_pred ccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhh
Confidence 3344333333 3345666777766 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
..+++ ...+.|. .......+..+.||||||+|+|+||+.+|++|++|||.+.|++|+....+..+..... ..++++
T Consensus 138 ~g~~~-~~~g~w~--~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~ 213 (336)
T KOG0069|consen 138 EGNEM-VRNGGWG--WAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEE 213 (336)
T ss_pred hhhhh-hhcCCcc--ccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHH
Confidence 99987 5788882 2222334568999999999999999999999999999999999987655533333333 569999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCC
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~ 294 (632)
++++||+|++|||+|++|+|+||++.|.+||+|++|||+|||.++|++++++||++|+|+||+||||+++|+.+++|+++
T Consensus 214 ~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~ 293 (336)
T KOG0069|consen 214 LLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTL 293 (336)
T ss_pred HHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999866999999999
Q ss_pred CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006758 295 PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNA 335 (632)
Q Consensus 295 pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nv 335 (632)
+||++|||+|+.|.+++.+|+..++.|+.+|| .|+...+.
T Consensus 294 dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~-~g~~~~~~ 333 (336)
T KOG0069|consen 294 DNVVILPHIGSATLETREKMAEIVLNNLLAFF-SGKPLLTP 333 (336)
T ss_pred cceeEecccccCcHHHHHHHHHHHHHHHHHHH-ccCCCCCc
Confidence 99999999999999999999999999999997 55544433
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=435.62 Aligned_cols=262 Identities=19% Similarity=0.217 Sum_probs=227.5
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHH
Q 006758 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLL 136 (632)
Q Consensus 57 i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~ 136 (632)
..+++++++... +...++||||++.++|+||||+++|+++||.++| +|+++.+||||++++||+++|++..+
T Consensus 32 ~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~ 103 (303)
T PRK06436 32 YYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICEN 103 (303)
T ss_pred cCCCCEEEecCC-------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHH
Confidence 457777765532 2345789999999999999999999998887766 58899999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-eecCCHHHH
Q 006758 137 ARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-RRMDTLNDL 215 (632)
Q Consensus 137 ~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-~~~~sL~eL 215 (632)
++. .+++.|... ..++|.|++|||||+|+||+.+|+++++|||+|++||++.... +. ....+++++
T Consensus 104 ~~~-~~~g~w~~~------~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~~~~~~~l~el 170 (303)
T PRK06436 104 NYN-MKNGNFKQS------PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GISSIYMEPEDI 170 (303)
T ss_pred HHH-HHcCCCCCC------CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------CcccccCCHHHH
Confidence 887 478999743 2357999999999999999999999999999999999975321 11 124689999
Q ss_pred hccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCC
Q 006758 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM 294 (632)
Q Consensus 216 L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~ 294 (632)
+++||+|++|||+|++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|.||+||||++ |++.++ .+
T Consensus 171 l~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~ 247 (303)
T PRK06436 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NP 247 (303)
T ss_pred HhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 544444 68
Q ss_pred CcEEEcCCCC-CccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCcCccCc
Q 006758 295 PNVLILPRSA-DYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (632)
Q Consensus 295 pNVIiTPHiA-g~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~~~~~~ 345 (632)
|||++|||++ ++|.++..++...+++||.+|+ .|+ |.|+|+.+ +|..+
T Consensus 248 ~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~-~g~-~~~~V~~~-~y~~~ 296 (303)
T PRK06436 248 DNVILSPHVAGGMSGEIMQPAVALAFENIKNFF-EGK-PKNIVRKE-EYIVR 296 (303)
T ss_pred CCEEECCccccccCHHHHHHHHHHHHHHHHHHH-cCC-CCceEchH-Hheee
Confidence 9999999976 5889999999999999999997 676 57999776 57554
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=346.21 Aligned_cols=177 Identities=35% Similarity=0.483 Sum_probs=150.1
Q ss_pred HHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc
Q 006758 123 MALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF 202 (632)
Q Consensus 123 LaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~ 202 (632)
|++||+++|++..++.+ .+++.|... .....++|.|+||||||+|+||+.+|+++++|||+|++|||+..... ..
T Consensus 1 i~l~L~~~R~~~~~~~~-~~~~~W~~~---~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-~~ 75 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEA-QRNGEWASR---ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE-GA 75 (178)
T ss_dssp HHHHHHHHTTHHHHHHH-HHTTBHHHH---TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH-HH
T ss_pred ChHHHHHHhCHHHHHHH-HHcCCCCCC---cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh-hc
Confidence 68999999999999988 488899111 12345789999999999999999999999999999999999985432 11
Q ss_pred ccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 203 PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 203 ~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
......+.+|++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|.||+||||+
T Consensus 76 ~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 76 DEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp HHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred ccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 12223567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCccccCCCcEEEcCCCC
Q 006758 283 G-PQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 283 ~-P~~~~~pL~~~pNVIiTPHiA 304 (632)
+ |++.++|||++|||++|||+|
T Consensus 156 ~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 156 PEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp SSSSSTTHHHHTSTTEEEESS-T
T ss_pred CCCCCCCChHHcCCCEEEeCccC
Confidence 7 777788999999999999987
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=368.21 Aligned_cols=398 Identities=25% Similarity=0.351 Sum_probs=334.1
Q ss_pred CCCCCCEEEEeCCCCCCchHHhhccCCceEEecCCC---CCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEeccc
Q 006758 15 NPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLG---RLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSS 91 (632)
Q Consensus 15 ~~~~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~---~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG 91 (632)
|....|++.+++. .++..++.+|+.++.+-+++.. ++.+..+++|..-+......++++-+++++.||+|...|.|
T Consensus 27 p~h~~p~~aLld~-rdc~vemPilk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g 105 (435)
T KOG0067|consen 27 PLHPRPLVALLDG-RDCGVEMPILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSG 105 (435)
T ss_pred CCCCCcchhhccc-ccccccchhhhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccc
Confidence 3446777777764 4778888999999999888743 44556677776666666668999999999999999999999
Q ss_pred CCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCC---CCCccccccCcEEEEE
Q 006758 92 DRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQP---LCRGMRRCRGLVLGIV 168 (632)
Q Consensus 92 ~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~---~~~~~~~L~GktVGII 168 (632)
+|++|+.+|.+.||.|||.|+...+.+|+-++.+||.++|+.+...+. .+.+.|...... ...+....+|.++|++
T Consensus 106 ~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~-l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~ 184 (435)
T KOG0067|consen 106 YDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQA-LREGTCTQGLEQVREAACGLARIRGPTLGLI 184 (435)
T ss_pred cchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhh-hcccceeechhhhhhhhhccccccccceeee
Confidence 999999999999999999999999999999999999999999887775 578888654321 2234467899999999
Q ss_pred eCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 169 GRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 169 GlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
|+|++|+.++.++++||..|+.||++....- ....+...+.+|.+++.++|.+++||-+++.+.++|+.-.+..|++|+
T Consensus 185 g~gr~g~av~~~A~afg~~~ifydp~~~~g~-~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGa 263 (435)
T KOG0067|consen 185 GFGRTGQAVALRAKAFGFVVIFYDPYLIDGI-DKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGA 263 (435)
T ss_pred ccccccceehhhhhcccceeeeecchhhhhh-hhhcccceecccchhhhhccceeeecccCcccccccccccceeecccc
Confidence 9999999999999999999999999976553 233456667789999999999999999999999999999999999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHcCCcceEE-eecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 006758 249 FLVNTGSSQLLDDCAVKQLLIDGTLAGCA-LDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 249 vLINvgRG~iVDe~AL~~AL~sg~I~GAa-LDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
+++|++||.++|+.+|.+||+.|+|.|++ -+ ....||.+.||.|+|||.+|+++.
T Consensus 264 flvnta~gglvdekaLaqaLk~G~i~~aa~~~------~~~~~l~d~pn~ic~~~ta~~~e~------------------ 319 (435)
T KOG0067|consen 264 FLVNTARGGLVDEKALAQALKSGRIRGAAPRS------FKQGPLKDAPNLICTPHTAWYSEA------------------ 319 (435)
T ss_pred eEeeecccccCChHHHHhhhccCceecccCcc------cccccccCCCCCCCCcccchhhHH------------------
Confidence 99999999999999999999999999877 11 111233344555555555554433
Q ss_pred cCCCCCccccCCcCccCcCcchhhhhhhcccccccccccccccccccccCCCccccccccccCCCCCcccCCCccccccc
Q 006758 328 DGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLTDDIQVSPEDSLKKGISWSRDSPSQLQGSGFSQNSAN 407 (632)
Q Consensus 328 ~G~~p~nvVn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (632)
T Consensus 320 -------------------------------------------------------------------------------- 319 (435)
T KOG0067|consen 320 -------------------------------------------------------------------------------- 319 (435)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccccchhhhhhhhhhcccCCCCCCccccccCCcccCCCCCccccccc---cccCCCccccccCCCCcchhhcch
Q 006758 408 TKSDGRRSRSGKKAKKRHARQKSLQKPDDPSALEKESTSHKEDDTAMSGTDQA---SSRCASPEELRSRKTPIESIQEST 484 (632)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 484 (632)
+|+-.-.+ ++|.|+|++++.+ +|..+++|..
T Consensus 320 ---------------------------------------------~~~e~re~aa~eiR~ai~g~ip~~-l~~cvnkE~~ 353 (435)
T KOG0067|consen 320 ---------------------------------------------ASVELREVAALEIRRAITGRIPDS-LRNCVNKEFS 353 (435)
T ss_pred ---------------------------------------------HHHHHHHHHhhhhhhccCCCCchh-HHHHHhhhhc
Confidence 22222222 5678899999999 9999999999
Q ss_pred hhhhhhcccccccccccccccceEEEEEEecCCceEEeeecccccceEEeecccccCCCccceEEE-eecCccccccccc
Q 006758 485 SKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLI-CKSKDTIGLRSFT 563 (632)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 563 (632)
..++--++++..++.+++++ ++++|+.+-. +|||.+ ++|+++||+ +|+
T Consensus 354 ~~~~p~s~~~~~a~h~eL~g---~~~~y~~~~~---------------------------aap~~~paa~~~~i~~-~~~ 402 (435)
T KOG0067|consen 354 PTNAPWSGIDGQAFHPELNG---ATYRYPPGIV---------------------------AAPFILPAANEGIIPG-GIP 402 (435)
T ss_pred cccCCccccchhhcchhhhc---cccccCCcce---------------------------ecccCCcccccccccc-ccc
Confidence 99999999999999999999 7888877644 999999 999999999 999
Q ss_pred cCCceeeecccceEEEeeccccccccceeccccce
Q 006758 564 AGGKLLQINRRMEFVFASHSFDAWESWAIEGPLEE 598 (632)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (632)
+|++|+|+|+.||++|. ||++|++|.+|+++.|
T Consensus 403 ~~~~lp~v~~~~q~psp--n~~~~~~~n~eh~~~e 435 (435)
T KOG0067|consen 403 AGHNLPTVAHPSQAPSP--NQPTKHGDNREHPNDE 435 (435)
T ss_pred ccCCCccccCcccCCCC--CCcccCCccccCcCCC
Confidence 99999999999999999 9999999999998764
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=192.13 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=126.6
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
..||+|+|+|++++.++||+++++++++...+ .+.+. ..+.|++|+|||+|.||+.+|++|
T Consensus 213 ~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~-------~R~~~------------~~LaGKtVgVIG~G~IGr~vA~rL 273 (476)
T PTZ00075 213 ELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI-------FRATD------------VMIAGKTVVVCGYGDVGKGCAQAL 273 (476)
T ss_pred CCCceEEEeCCcchHHHHHHHHHHHHHHHHHH-------HHhcC------------CCcCCCEEEEECCCHHHHHHHHHH
Confidence 36899999999999999999999999988332 22211 258999999999999999999999
Q ss_pred hhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcH
Q 006758 182 LSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 182 kafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
++|||+|+++++++.........++ ...+++++++.||||++|+ .|.++|+.+.|..||+|++|||+||+ |+
T Consensus 274 ~a~Ga~ViV~e~dp~~a~~A~~~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLINvGr~---d~ 345 (476)
T PTZ00075 274 RGFGARVVVTEIDPICALQAAMEGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVGNIGHF---DN 345 (476)
T ss_pred HHCCCEEEEEeCCchhHHHHHhcCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEEEcCCC---ch
Confidence 9999999999877543321222333 3458999999999999985 37899999999999999999999999 78
Q ss_pred HHHHHHHHcCCcceEEeecCCCCCCCC
Q 006758 262 CAVKQLLIDGTLAGCALDGAEGPQWME 288 (632)
Q Consensus 262 ~AL~~AL~sg~I~GAaLDVfE~P~~~~ 288 (632)
+.++++|+.+. ++|+++..|...
T Consensus 346 Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 346 EIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred HHhHHHHHhcC----CceeecccCCCC
Confidence 88888988643 789988643333
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-18 Score=179.88 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=127.1
Q ss_pred CCCCHHHHhcCCCceEEEEecccCCccchH-HHHhcCcEEE------EcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 006758 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSA-LAADLGLRLI------HVDTSRAEEIADTVMALLLGLLRRTHLLARHAL 141 (632)
Q Consensus 69 ~~L~~evL~~lp~LK~I~~~gaG~D~VD~~-aa~erGI~Vt------Nvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~ 141 (632)
..+++++++++|. ++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++++++...
T Consensus 80 ~~l~~~~l~~~~~---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~----------- 145 (287)
T TIGR02853 80 VVLTPELLESTKG---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT----------- 145 (287)
T ss_pred ccccHHHHHhcCC---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc-----------
Confidence 4578899999983 66667788888888 8999999999 8999999999999999877320
Q ss_pred HhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--eecCCHHHHhccC
Q 006758 142 SASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAAS 219 (632)
Q Consensus 142 ~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~A 219 (632)
. .+++|++++|||+|.||+.+|+.|++||++|.+++|+..........+. ....++.+++.++
T Consensus 146 ---~------------~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a 210 (287)
T TIGR02853 146 ---D------------FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI 210 (287)
T ss_pred ---C------------CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence 0 2478999999999999999999999999999999998643221111122 2235688899999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
|+|++|+|+ ++++++.++.||+++++||++..+
T Consensus 211 DiVint~P~-----~ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 211 DIVINTIPA-----LVLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred CEEEECCCh-----HHhCHHHHhcCCCCeEEEEeCcCC
Confidence 999999997 478899999999999999999854
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-17 Score=149.66 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=79.0
Q ss_pred EEEeCCCCCCchHHhhccC-CceEEecCCCCCc--ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchH
Q 006758 22 VVALNCIEDCVLEQDSLAG-VALVEHVPLGRLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSA 98 (632)
Q Consensus 22 VvvL~~~e~~~~e~e~L~~-laeV~~~~~~~l~--e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~ 98 (632)
|+++..+ .+...+.|++ + ++..++..... .+.++++|+++++...++++++++++|+||||++.|+|+|+||++
T Consensus 1 ili~~~~--~~~~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~ 77 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLE 77 (133)
T ss_dssp EEESSS---SHHHHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HH
T ss_pred eEEeccC--CHHHHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHH
Confidence 4555543 4556777777 6 88887732221 256889999999988779999999999999999999999999999
Q ss_pred HHHhcCcEEEEcCCCChHHHHHHH
Q 006758 99 LAADLGLRLIHVDTSRAEEIADTV 122 (632)
Q Consensus 99 aa~erGI~VtNvpg~na~aVAE~A 122 (632)
+|+++||.|+|+||+++.+||||+
T Consensus 78 ~a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 78 AAKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HHhhCeEEEEEeCCcCCcchhccc
Confidence 999999999999999999999999
|
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=148.35 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=130.6
Q ss_pred cccccceEEEEecC----------------CCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCC-----
Q 006758 55 GKIEAAAAVLLHSL----------------AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTS----- 113 (632)
Q Consensus 55 ~~i~dAdaIli~s~----------------~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~----- 113 (632)
+.+.++|+++..-. ..++.+.++.+|+++.+. .|.+.++++ +.|.++||.+++....
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 34677888875511 134678999999997555 588889988 7889999999987754
Q ss_pred -ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEEC
Q 006758 114 -RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD 192 (632)
Q Consensus 114 -na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~d 192 (632)
++.++||.++.+.+... ..++.|++++|||+|.+|+.++..|+++|++|.++|
T Consensus 129 ~ns~~~aegav~~a~~~~--------------------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~ 182 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEHT--------------------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGA 182 (296)
T ss_pred hccHhHHHHHHHHHHHhC--------------------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence 88999999777544110 023689999999999999999999999999999999
Q ss_pred CCCCCCCcccccCce--ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 193 VPEGKGKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 193 r~~~~~~~~~~~g~~--~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
++..........+.. ...++.+.+.++|+||+++|. .+++++.++.|++|+++||++..
T Consensus 183 r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 183 RKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 986432211122222 234678899999999999984 57889999999999999999874
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=157.50 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=102.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.|++|+|+|+|.||+.+|+++++|||+|+++++++.........+.. +.+++++++.+|||++ +..|+++|+.+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~----tTGt~~vI~~e 326 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVT----TTGNKDIIMVD 326 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEE----CCCCccchHHH
Confidence 689999999999999999999999999999999876432222333333 3478999999999997 34578999999
Q ss_pred HHhccCCCcEEEEcCC-ChhhcHHHHHHH--HHcCCcceEEeecCCCCC
Q 006758 240 CLQHIKPGAFLVNTGS-SQLLDDCAVKQL--LIDGTLAGCALDGAEGPQ 285 (632)
Q Consensus 240 ~L~~MK~GAvLINvgR-G~iVDe~AL~~A--L~sg~I~GAaLDVfE~P~ 285 (632)
.|+.||+|++|||+|| +..||+.+|.++ ++.+.+. +.+|+|+-|.
T Consensus 327 ~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 327 HMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 9999999999999999 689999999998 9999998 9999998654
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-13 Score=145.76 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=101.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.|++|+|+|+|.||+.+|++++++|++|+++++++.........+. .+.++++++..+|+|+.+.. +.++|+.+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~~ 267 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRGE 267 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHHH
Confidence 78999999999999999999999999999999877643322223343 34578999999999988654 67899999
Q ss_pred HHhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCcceEEeecCCC
Q 006758 240 CLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~i-VDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
.|..||+|++|+|+||+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 268 ~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 268 HFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 9999999999999999998 9999999999888888899999873
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-13 Score=143.06 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=77.9
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
..|+|+||||||+|.||+++|++|++||++|++|++...........+.. +.+++++++.||+|++|||+ ++|+++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 46899999999999999999999999999999998654332212222443 45999999999999999997 77899999
Q ss_pred HHHHhccCCCcEEEE
Q 006758 238 AECLQHIKPGAFLVN 252 (632)
Q Consensus 238 ~~~L~~MK~GAvLIN 252 (632)
.+.+..||+|++|+-
T Consensus 90 ~eil~~MK~GaiL~f 104 (335)
T PRK13403 90 AEVEENLREGQMLLF 104 (335)
T ss_pred HHHHhcCCCCCEEEE
Confidence 999999999998864
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=125.08 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=93.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc-HHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-AECL 241 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~-~~~L 241 (632)
++|||||+|.||..||++|...|++|.+||++....+.....++...+++.|++..||+|++++|..++++.++. ...+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 579999999999999999999999999999987554434445677789999999999999999999888888863 2278
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
..+++|.++||++....-....+.+.+....+. .+|+-
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vdap 119 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDAP 119 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeeee
Confidence 899999999999999999999999999876654 77753
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-12 Score=130.51 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=103.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-CCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AE 239 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~-~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~ 239 (632)
.+|||||+|.||..||++|...|+.|.+|||++.. .+.....|+....+..|+.+.+|+||+|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999866 3333344777788999999999999999999999999985 57
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+..||+|+++||++..+......+.++++++.+. .||.
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 99999999999999999999999999999998876 7885
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=134.38 Aligned_cols=141 Identities=21% Similarity=0.201 Sum_probs=103.4
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
+++++|+|++..+....-|...+.-......+. +.. ...+.|++|+|+|+|.||+.+|.+|
T Consensus 171 ~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~-------rat------------~~~l~Gk~VlViG~G~IG~~vA~~l 231 (425)
T PRK05476 171 ALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK-------RAT------------NVLIAGKVVVVAGYGDVGKGCAQRL 231 (425)
T ss_pred CCCCCEEecCCcccCccccccHHHHhhhHHHHH-------Hhc------------cCCCCCCEEEEECCCHHHHHHHHHH
Confidence 578999999988776644433322222221110 000 0136899999999999999999999
Q ss_pred hhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh-hc
Q 006758 182 LSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL-LD 260 (632)
Q Consensus 182 kafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i-VD 260 (632)
+++|++|+++|+++.........+.. +.++++++..+|+|+.+. .+.++|+.+.|..||+|++++|+|+... +|
T Consensus 232 r~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~GailiNvG~~d~Eid 306 (425)
T PRK05476 232 RGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAILANIGHFDNEID 306 (425)
T ss_pred HhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence 99999999999876443222222333 457899999999998875 3567899999999999999999999876 77
Q ss_pred HHHHHH
Q 006758 261 DCAVKQ 266 (632)
Q Consensus 261 e~AL~~ 266 (632)
.++|.+
T Consensus 307 ~~~L~~ 312 (425)
T PRK05476 307 VAALEE 312 (425)
T ss_pred hHHHhh
Confidence 777654
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-11 Score=124.42 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=94.1
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc-c-HHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII-N-AECL 241 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI-~-~~~L 241 (632)
+|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.+++.+||+|++|+|.++.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 4899999999999999999999999999998644332223344455688999999999999999988888775 3 3467
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEee
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLD 279 (632)
..+++|+++||+++..+.+..+|.+.+++..+. .+|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 889999999999999999889999999987554 455
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.4e-11 Score=122.16 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=94.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~ 240 (632)
++|||||+|.||..+|+.+...|++|.+||++..........+.....++++++.+||+|++|+|.+..++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 479999999999999999999999999999986443222223444557899999999999999999888888764 346
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|+++||+++..+....++.+.+.+..+. .+|.
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~--~~d~ 120 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE--MLDA 120 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7889999999999999998888999998876554 4443
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-11 Score=122.75 Aligned_cols=116 Identities=10% Similarity=0.105 Sum_probs=97.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AECL 241 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~L 241 (632)
+|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.++++.||+|++|+|....++.++. ...+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~ 82 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVC 82 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHh
Confidence 79999999999999999999999999999987544322233455567889999999999999999887777764 2467
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
..+++|.++||++++.+.....+.+.+.+..+. .+|.-
T Consensus 83 ~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~ldap 120 (296)
T PRK15461 83 EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDVP 120 (296)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEcc
Confidence 789999999999999999999999999988776 67753
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=121.74 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=95.6
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc---CCEEEEccCCChhhHhhccHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
+|||||+|.||..+|++|...|.+|++||++..........+.....++++++.. +|+|++|+|..+.++.+++ ..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 6999999999999999999999999999998644332223345556789999876 6999999999888888884 67
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|.++||+++....+..++.+.+.+..+. .+|.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda 118 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC 118 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence 7889999999999999999999999999887764 6884
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.9e-11 Score=113.18 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=73.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+.||++.|+|||.+|+.+|+.|+++|++|.+++..+.....+...|. .+.++++++..+|+|+.+... .++|..
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf-~v~~~~~a~~~adi~vtaTG~----~~vi~~ 94 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGF-EVMTLEEALRDADIFVTATGN----KDVITG 94 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--EEE-HHHHTTT-SEEEE-SSS----SSSB-H
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCc-EecCHHHHHhhCCEEEECCCC----ccccCH
Confidence 379999999999999999999999999999999998754433333344 456899999999999988653 578999
Q ss_pred HHHhccCCCcEEEEcCCChh-hcHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVK 265 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~i-VDe~AL~ 265 (632)
+.|.+||+|++|.|++.-.. +|-+.|.
T Consensus 95 e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 95 EHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp HHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred HHHHHhcCCeEEeccCcCceeEeecccc
Confidence 99999999999999998655 5555444
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-10 Score=118.09 Aligned_cols=114 Identities=24% Similarity=0.285 Sum_probs=95.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc---CCEEEEccCCChhhHhhccHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
+|||||+|.||..+|++|...|.+|.+||++..........++....++++++.. +|+|++++|..+.+..++ ...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence 6999999999999999999999999999998754432223455556789998876 699999999987888887 467
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|.++||++++......++.+.+++..+. .+|+
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 7889999999999999999999999999988776 5675
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=114.24 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=83.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHh-ccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
-++++|||||+|.||+.+|+.++.+|.+|++|+++... ......+.....++++++ ..+|+|++|+|. ..+..++..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~ 111 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS 111 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh
Confidence 46789999999999999999999999999999988532 211223444456788876 479999999996 467777754
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
-....++++++|++++.++-+..+++.+.+..
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 33567899999999999776656666666543
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-09 Score=122.01 Aligned_cols=114 Identities=12% Similarity=0.133 Sum_probs=96.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----cCce---ecCCHHHHhcc---CCEEEEccCCChhhH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SAAR---RMDTLNDLLAA---SDVISLHCAVTDETI 233 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~----~g~~---~~~sL~eLL~~---ADVV~l~lPlT~~T~ 233 (632)
+|||||+|.||..||++|...|++|.+|||+....+.... .++. ...++.+++.. +|+|++|+|..+.+.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 5999999999999999999999999999998754432111 1322 45688998876 999999999999999
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.++ ...+..|++|.++||++....-+...+.+.+.+..+. .||.
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~--flda 131 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL--YLGM 131 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEeC
Confidence 998 5688899999999999999999999999999998876 6664
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.5e-10 Score=118.19 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=76.5
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
..|+|++|||||+|+||.++|+.|+.+|++|+++++...... .....+.. ..++.++++.||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 458999999999999999999999999999998876643221 11122343 34899999999999999997665 7788
Q ss_pred cHHHHhccCCCcEEEEcCCC
Q 006758 237 NAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG 256 (632)
+++.+..|++|++| -++.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 77888999999988 55555
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=125.18 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=88.0
Q ss_pred ccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc-cCCEEEEccCCChhhHh
Q 006758 156 GMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQ 234 (632)
Q Consensus 156 ~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~ 234 (632)
.++.+.+++|||||+|.||+.+|+.|+.+|++|++||++... ......++....++++++. .+|+|++|+|. ..+..
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~ 440 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEK 440 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHH
Confidence 345678999999999999999999999999999999987532 2122234455678888876 58999999995 67888
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++.+-.+..||+|++|||++.++-...+++.+.+..
T Consensus 441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 887655557999999999999985555555555544
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-09 Score=111.81 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=94.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH--HHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--ECL 241 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~--~~L 241 (632)
+|||||+|.||..||++|...|++|.+||+++.. ......++....+..+++..||+|++|+|..+.++.++.. ..+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~-~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVA-DELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhH-HHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 6999999999999999999999999999987632 2222345556678999999999999999998888877632 367
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
..+++|.++|+++....-....+.+.+.+..+. .+|.
T Consensus 81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 81 KASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 778999999999999998888899998887654 6775
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-09 Score=116.63 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=84.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+.|++|+|+|+|.||..+|+.++++|++|+++|+++.........|+. ..++++++..+|+|+.+.. +.++|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i~~ 273 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDIITG 273 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHHHH
Confidence 3689999999999999999999999999999999876544333334443 3467888999999998754 4578888
Q ss_pred HHHhccCCCcEEEEcCCChh-hcHHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQ 266 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~i-VDe~AL~~ 266 (632)
+.|..||+|++|||+|++.+ +|..+|..
T Consensus 274 ~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 274 EHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 88999999999999999876 77777654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-09 Score=109.97 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=90.6
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHH---hccCCEEEEccCCChhhHhhccHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL---LAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eL---L~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
+|||||+|.||..+|+.|...|.+|.+||++....+.....+.....++.++ +..+|+|++++|.. .+..++ .+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~l 79 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EEL 79 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HHH
Confidence 6999999999999999999999999999998754332222333334566554 45689999999987 788887 467
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
...+++|.++||++.+...+...+.+.+.+..+. .+|..
T Consensus 80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda~ 118 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDCG 118 (298)
T ss_pred HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEecC
Confidence 7889999999999999888999999888876664 56653
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-09 Score=109.43 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=102.6
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-- 237 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~-- 237 (632)
...++||+||+|.||..|+..|...|++|++||++....+.....|+...+++.|+.+.||+||+++|...+.+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 357899999999999999999999999999999998766655566777889999999999999999999999998874
Q ss_pred HHHHhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 238 AECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 238 ~~~L~~MK~GAvL-INvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
...|+.+++|... |+.+.-..--...|.+++...... .+|.
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 3488888888888 899988877778899998877555 7775
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.7e-09 Score=115.77 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=96.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----cC--ceecCCHHHHhc---cCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SA--ARRMDTLNDLLA---ASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~----~g--~~~~~sL~eLL~---~ADVV~l~lPlT~~T~ 233 (632)
.+|||||+|.||..||++|...|++|.+||++....+.... .+ .....++++++. ++|+|++++|....+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 36999999999999999999999999999998754321111 12 234678999886 5899999999999999
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.++ .+.+..|++|.+|||++.+...|...+.+.+.+..+. .||+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda 125 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM 125 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence 998 4678889999999999999999999999999998876 6664
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.9e-09 Score=127.66 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=101.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc--cH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NA 238 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI--~~ 238 (632)
...+|||||+|.||..||++|...|.+|.+||++....+.....++...+++.++...||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 4567999999999999999999999999999998755443334566777899999999999999999999999887 34
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
..+..+++|.++|+++...+-....+.+.+.+..-....+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 678889999999999999999999999999876622237886
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-09 Score=108.28 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=90.6
Q ss_pred EEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHHHhcc
Q 006758 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AECLQHI 244 (632)
Q Consensus 167 IIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~L~~M 244 (632)
|||+|.||..||+.|...|.+|.+||++..........+.....++.+++.+||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999986543322233455567899999999999999998888777773 4567789
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 245 K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
++|.++||++....-....+.+.+.+..+. .+|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999988877777788888876554 6774
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.3e-09 Score=127.47 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=98.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc--cHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--NAE 239 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI--~~~ 239 (632)
.++|||||+|.||..||++|...|++|.+||++..........++....++.+++..||+|++|+|...+++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 478999999999999999999999999999998754332223345556789999999999999999999999887 345
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHc--CCcceEEeecC
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLID--GTLAGCALDGA 281 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s--g~I~GAaLDVf 281 (632)
.+..|++|.++||++....-....+.+.+.+ ..+. .+|.-
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDAP 445 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDAP 445 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEcc
Confidence 7888999999999999998888889998887 4443 67753
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=103.94 Aligned_cols=138 Identities=15% Similarity=0.108 Sum_probs=85.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~-~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
+|||||+|.||..+|..|+..|.+|.+||++....+.....+.. ...+..+.+.+||+|++|+|... +..++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHH
Confidence 69999999999999999999999999999876433222222221 12232357889999999999633 33444 45667
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 006758 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 243 ~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiA 304 (632)
.+++++++++++.-+.--.+++.+.. ...+.++.+-..+. ......-|+...++++||+-.
T Consensus 80 ~l~~~~ii~d~~Svk~~~~~~~~~~~-~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~ 142 (279)
T PRK07417 80 ALPPEAIVTDVGSVKAPIVEAWEKLH-PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTEN 142 (279)
T ss_pred hCCCCcEEEeCcchHHHHHHHHHHhh-CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCC
Confidence 78999999999986643222222211 11121111111110 001112366778899999754
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=112.55 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=92.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-----CceecCCHHHHh---ccCCEEEEccCCChhhHhhc
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----AARRMDTLNDLL---AASDVISLHCAVTDETIQII 236 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-----g~~~~~sL~eLL---~~ADVV~l~lPlT~~T~~lI 236 (632)
|||||+|.||..||++|...|.+|.+||++....+..... ++....++.++. +.+|+|++++|..+.+..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 8999999999999999999999999999987544321111 133456777766 46899999999988888888
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+.+..+++|.+|||++.....|...+.+.+.+..+. .+|+
T Consensus 82 -~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred -HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 4677889999999999999999999999999887775 6665
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.3e-08 Score=99.55 Aligned_cols=129 Identities=13% Similarity=0.064 Sum_probs=90.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------cc-----------------CceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------PS-----------------AARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-------~~-----------------g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|++|++||++....+... .. ......++.+.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 4799999999999999999999999999999864332100 00 12234678899999
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvL-INvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
||+|+.|+|...+.+..+-.+..+.++++++| +|++.-.+ ..+.+.+. ..-...++..+ .|.. ..+=+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~-~~~r~~g~h~~-~Pv~------~~~Lv 150 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTK-RPERVIAMHFF-NPVH------KMKLV 150 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcC-CcccEEEEecC-CCcc------cCceE
Confidence 99999999988877666655677788999977 78877554 45555543 22233466656 4432 23455
Q ss_pred EEcCC
Q 006758 298 LILPR 302 (632)
Q Consensus 298 IiTPH 302 (632)
.+.|+
T Consensus 151 e~v~g 155 (288)
T PRK09260 151 ELIRG 155 (288)
T ss_pred EEeCC
Confidence 66665
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.1e-08 Score=105.72 Aligned_cols=135 Identities=21% Similarity=0.187 Sum_probs=89.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--ccCce--ecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF--PSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--~~g~~--~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|+|||+|.||.++|+.|+..|..|.+|+++........ ..+.. ...++++++.+||+|++|+|. ..+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 4799999999999999999999998888887654322111 11111 135678899999999999997 45667763
Q ss_pred HHHh-ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCC---------CCccccCCCcEEEcCCCC
Q 006758 239 ECLQ-HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW---------MEAWVREMPNVLILPRSA 304 (632)
Q Consensus 239 ~~L~-~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~---------~~~pL~~~pNVIiTPHiA 304 (632)
+... .+++++++++++.-+.-..+++.+.+.. .. -.+..+ |.+ ....|+.....++||+-.
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~--~~ig~H--PMaG~e~sG~~aa~~~lf~g~~~il~~~~~ 149 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LI--RFVGGH--PMAGSHKSGVAAARADLFENAPWVLTPDDH 149 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CC--eEEeeC--CcCcCchhhHHHhcHHHHCCCcEEEecCCC
Confidence 3333 4889999999999775444444333211 11 233332 221 223567777789999754
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-08 Score=101.93 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=90.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCc--eecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
..++|+|||+|.||..+|..++..|. +|.+||++..........+. ....++++++..||+|++|+|.. .+..++
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~ 83 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA 83 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH
Confidence 34689999999999999999998885 89999998643221111221 22357788899999999999973 333443
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC--C-----CCCCCccccCCCcEEEcCCCCC
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--G-----PQWMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE--~-----P~~~~~pL~~~pNVIiTPHiAg 305 (632)
.+....+++++++++++..+.--.+++.+.+.. .+ ..+..+. . |......|+...+++++|+.+.
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~--~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GV--HFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CC--eEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 445567899999999988653323333333322 11 1333321 1 1112236777778999997543
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.1e-08 Score=105.87 Aligned_cols=134 Identities=18% Similarity=0.208 Sum_probs=94.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
++|+||| +|.||..+|+.|+..|.+|.+|+++..... .....++....++.+.+..||+|++|+|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 3799997 999999999999999999999998764321 11122444456788899999999999997 4556666 456
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCC-CCccccCCCcEEEcCCC
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVREMPNVLILPRS 303 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~-~~~pL~~~pNVIiTPHi 303 (632)
...+++++++++++..+....+++.+.+..+. ..+.. +|.. +..+++....++++|+-
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~---~~V~~--HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV---EILPT--HPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC---EEEEc--CCCCCCCCcccCCCEEEEecCC
Confidence 67789999999999866555556665544321 12222 2321 22356677889999975
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.6e-08 Score=100.43 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=90.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEEC--CCCCCCCcccccCcee--cCC-HHHHhccCCEEEEccCCChhhHhhc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARR--MDT-LNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~d--r~~~~~~~~~~~g~~~--~~s-L~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
-++|+|+|+|.||+.+|+.++..|..|.+++ ++....+.....++.. ..+ +.+.+..+|+|++++|. ..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 4689999999999999999999998775554 4443332222233322 123 36778889999999997 4566666
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCC---CCccccCCCcEEEcCCC
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQW---MEAWVREMPNVLILPRS 303 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~---~~~pL~~~pNVIiTPHi 303 (632)
++....+|+|++|+++++-+----+++.+.+.++. . .+ --+|.. ...+++..-.+|+||.-
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~--~v--g~HPM~G~~~~~~lf~~~~~vltp~~ 145 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R--FV--GGHPMFGPEADAGLFENAVVVLTPSE 145 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e--eE--ecCCCCCCcccccccCCCEEEEcCCC
Confidence 34555899999999999977665566665554321 1 11 123432 24578888889999963
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.8e-08 Score=100.85 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=69.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.+++|||||+|.||+.+|++|...|++|.+|+|+.. .++.++++++|+|++++|. ..+..++.. .
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l 67 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-V 67 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-H
Confidence 467899999999999999999999999999998752 4788999999999999998 577777733 3
Q ss_pred Hh-ccCCCcEEEEcCCChh
Q 006758 241 LQ-HIKPGAFLVNTGSSQL 258 (632)
Q Consensus 241 L~-~MK~GAvLINvgRG~i 258 (632)
.. .+++++++|++++|-.
T Consensus 68 ~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 68 QALNLPPETIIVTATKGLD 86 (308)
T ss_pred HHhcCCCCcEEEEeCCccc
Confidence 23 4789999999987543
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=99.02 Aligned_cols=129 Identities=19% Similarity=0.103 Sum_probs=88.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccc------------CceecCCHHHHhccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPS------------AARRMDTLNDLLAAS 219 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~------------g~~~~~sL~eLL~~A 219 (632)
++|||||+|.||..||..+...|++|++||++...... .... +.....+..+.++.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 57999999999999999999999999999988643210 0000 112222333568999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
|+|+.|+|..++.+..+-.+....++++++|+ |++.-. ...+.+.+.. ....+++-.+.+| . ..+-+.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~-~~r~~g~h~~~pp-~------~~~lve 153 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR-PQQVIGMHFMNPP-P------IMKLVE 153 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC-CcceEEEeccCCc-c------cCceEE
Confidence 99999999999988888778778899999987 777754 3345555432 1222334334322 2 234566
Q ss_pred EcCC
Q 006758 299 ILPR 302 (632)
Q Consensus 299 iTPH 302 (632)
+.|+
T Consensus 154 iv~g 157 (295)
T PLN02545 154 IIRG 157 (295)
T ss_pred EeCC
Confidence 7776
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.5e-08 Score=112.76 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=80.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHh-ccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
-+.++|||||+|.||+.+|+.++.+|++|++||++... ......++....++++++ ..+|+|++|+|. ..+..++..
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 35578999999999999999999999999999987432 212223455566888866 569999999996 567888866
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
-.+..|++|++|+|+++-+..--+++.+.+.
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~ 158 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP 158 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence 4456799999999998766433344444443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.5e-07 Score=97.78 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=71.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
..++|+||| +|.||+.+|+.|+..|..|.+||+... .++++++++||+|++|+|... +..++. +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~~-~ 161 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVIA-R 161 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H
Confidence 458899999 999999999999999999999998531 356788999999999999864 456663 3
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
+..+++|++|+++++-+..-..++.+.
T Consensus 162 -l~~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 162 -LPPLPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred -HhCCCCCcEEEECCCccHHHHHHHHHh
Confidence 444999999999988654334444443
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.9e-08 Score=102.68 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=71.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC-CCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE-GKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~-~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
|+|++|||||+|+||.++|+.|+.+|++|+++++.. .........+.. ..++.++++.||+|++++|.... ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 578999999999999999999999999988765543 222211123443 34688999999999999996433 344556
Q ss_pred HHHhccCCCcEEEEcCCChhh
Q 006758 239 ECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iV 259 (632)
+....|+++. +|.++-|--+
T Consensus 79 ei~~~l~~g~-iVs~aaG~~i 98 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGFNI 98 (314)
T ss_pred HHHhhCCCCc-EEEEeCCccH
Confidence 6778888886 7888877644
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.5e-07 Score=95.70 Aligned_cols=89 Identities=24% Similarity=0.294 Sum_probs=64.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCce-ecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAAR-RMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~~-~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
+|+|||+|.||..+|..|+..|. +|++||++..........+.. ...++.++. .||+|++|+|... +..++ .+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PKL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HHH
Confidence 69999999999999999997774 899999876433222222322 234677765 5999999999744 44454 345
Q ss_pred HhccCCCcEEEEcCCC
Q 006758 241 LQHIKPGAFLVNTGSS 256 (632)
Q Consensus 241 L~~MK~GAvLINvgRG 256 (632)
.. ++++++|+++|.-
T Consensus 79 ~~-l~~~~iv~d~gs~ 93 (275)
T PRK08507 79 LD-IKENTTIIDLGST 93 (275)
T ss_pred hc-cCCCCEEEECccc
Confidence 55 8899999998763
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.3e-07 Score=95.71 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=81.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--------------------cccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT--------------------FPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~--------------------~~~g~~~~~sL~eLL~~ADVV 222 (632)
++|||||.|.||..+|..+...|++|++||+++...... .........++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 589999999999999999999999999999975422100 001123456899999999999
Q ss_pred EEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+-++|-+.+.+.-+-++..+.++++++|- ++... +...++.+++.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIla-SnTS~-l~~s~la~~~~ 132 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIA-SSTSG-LLPTDFYARAT 132 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEE-ECCCc-cCHHHHHHhcC
Confidence 99999999999988888889999999554 44443 45667777764
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-07 Score=98.97 Aligned_cols=96 Identities=14% Similarity=0.220 Sum_probs=74.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccc----CceecCCHHHHhccCCEEEEccCCC-h
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPS----AARRMDTLNDLLAASDVISLHCAVT-D 230 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~----g~~~~~sL~eLL~~ADVV~l~lPlT-~ 230 (632)
.+.+.+|.|||.|.+|..+++.++++|++|.++|++....+. .+.. .......+.+.+..+|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 367788999999999999999999999999999987533211 0110 0011235778889999999998763 2
Q ss_pred hhHhhccHHHHhccCCCcEEEEcC
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.+..+|+++.+..||++++|||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 356789999999999999999997
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-07 Score=100.94 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=85.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.||++.|.|||.+|+.+|.+|++.|++|++.+..+.....+... .+.+.++++....+||++.+.- ++++|..+
T Consensus 207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~Md-Gf~V~~m~~Aa~~gDifiT~TG----nkdVi~~e 281 (420)
T COG0499 207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMD-GFRVMTMEEAAKTGDIFVTATG----NKDVIRKE 281 (420)
T ss_pred ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhc-CcEEEEhHHhhhcCCEEEEccC----CcCccCHH
Confidence 799999999999999999999999999999998877544333333 4456689999999999999875 47899999
Q ss_pred HHhccCCCcEEEEcCCChh-hcHHHHHH
Q 006758 240 CLQHIKPGAFLVNTGSSQL-LDDCAVKQ 266 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~i-VDe~AL~~ 266 (632)
.|..||+|+++.|.|.-.+ ||...|.+
T Consensus 282 h~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 282 HFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHhccCCeEEecccccceeccHHHHHH
Confidence 9999999999999998666 66666543
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-08 Score=107.07 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=73.2
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC------CCCCCcccccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP------EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~------~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
...|+|++|+|||+|.+|..-|..|+-.|++|.+--|. ...-..+...+. .+.++.|+++.||+|++.+|.+
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF-~v~~~~Ea~~~ADvVviLlPDt- 108 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF-KVGTYEELIPQADLVINLTPDK- 108 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC-ccCCHHHHHHhCCEEEEcCChH-
Confidence 35799999999999999998888888888877743333 211111111232 4578999999999999999998
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
. .+.|..+.+..||+|++|. .+.|--
T Consensus 109 ~-q~~v~~~i~p~LK~Ga~L~-fsHGFn 134 (487)
T PRK05225 109 Q-HSDVVRAVQPLMKQGAALG-YSHGFN 134 (487)
T ss_pred H-HHHHHHHHHhhCCCCCEEE-ecCCce
Confidence 3 6777799999999999865 445543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-07 Score=95.66 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=101.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (632)
++|||||.|.||..||..+...|++|++||+++...+. ....+ .....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 37999999999999999999999999999998754321 11111 1134567 55899
Q ss_pred CCEEEEccCCChhhHhhccHHHHhcc-CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~M-K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
||+|+-++|-+.+.+.-+-...-+.+ +++++|++.+++-.+ .++..++.. .=..+++..|.+|+ .+|-|
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~P~~-------~~~lv 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFNPVP-------VLPLV 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCCCcc-------cCceE
Confidence 99999999999998888776554545 899999988776544 344444432 11224555555322 23555
Q ss_pred EEcCCCCCccHHHHHHHHHHHHHHHHHHHH--cCCCCCccccCCcCcc
Q 006758 298 LILPRSADYSEEVWMEIRDKAISVLQTFFF--DGVIPKNAISDTEGCE 343 (632)
Q Consensus 298 IiTPHiAg~T~ea~~~~~~~a~~nL~~fL~--~G~~p~nvVn~~~~~~ 343 (632)
=++||.+ .+.++.+ .+..|+. -|+.|..+ +...|+.
T Consensus 155 Elv~~~~-T~~~~~~--------~~~~~~~~~lgk~pv~v-~d~pGfi 192 (286)
T PRK07819 155 ELVPTLV-TSEATVA--------RAEEFASDVLGKQVVRA-QDRSGFV 192 (286)
T ss_pred EEeCCCC-CCHHHHH--------HHHHHHHHhCCCCceEe-cCCCChH
Confidence 6777644 3333333 3333322 25555543 5555554
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-07 Score=92.66 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=76.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEE-CCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKM----SVLYF-DVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm----~V~~~-dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|||||+|+||..||+.|...|. +|++| +++..........++....+..+++.+||+|++|+| ......++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 369999999999999999998887 89999 887643322222355556788899999999999997 456777763
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
+....++++.++|++.-| +..+.+.+.+
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~ 107 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWA 107 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHc
Confidence 455667899999988765 3555666554
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-07 Score=92.57 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=92.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------------c---------ccCceecCCHHHHhc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----------------F---------PSAARRMDTLNDLLA 217 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----------------~---------~~g~~~~~sL~eLL~ 217 (632)
++|+|||.|.||..+|..+...|.+|++||++....+.. . ........++++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 479999999999999999999999999999875321100 0 012223568889999
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
.||+|+.++|...+.+.-+-++....++++++|+..+++- ....+.+.+... -...++-.| +| .+.+|.|
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~-~r~vg~Hf~-~p------~~~~~lv 153 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRP-EKFLALHFA-NE------IWKNNTA 153 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCc-ccEEEEcCC-CC------CCcCCeE
Confidence 9999999999776655555456667789999885544433 345566665421 122333222 22 3367888
Q ss_pred EEcCCCCCccHHHHHH
Q 006758 298 LILPRSADYSEEVWME 313 (632)
Q Consensus 298 IiTPHiAg~T~ea~~~ 313 (632)
.+.|+-. .++++...
T Consensus 154 evv~~~~-t~~~~~~~ 168 (287)
T PRK08293 154 EIMGHPG-TDPEVFDT 168 (287)
T ss_pred EEeCCCC-CCHHHHHH
Confidence 8998744 34444443
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.7e-07 Score=96.31 Aligned_cols=120 Identities=19% Similarity=0.182 Sum_probs=82.8
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh-CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 161 RGLVLGIVGR-SASARALATRSLS-FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka-fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.-.+|+|||+ |.||+.+|+.++. +|.+|++||+... ...++.+++.+||+|++|+|. ..+..+|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l~- 69 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALIE- 69 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 4578999999 9999999999995 6999999998521 124678889999999999997 34455553
Q ss_pred HHH---hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC-CCCCCC--CccccCCCcEEEcCC
Q 006758 239 ECL---QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWM--EAWVREMPNVLILPR 302 (632)
Q Consensus 239 ~~L---~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf-E~P~~~--~~pL~~~pNVIiTPH 302 (632)
+.. ..+++|++++++++-+---.+++ +.. .. ++. -+|... .+.+++.-++++||.
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~-~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQAPVAAM---LAS-QA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcHHHHHHH---Hhc-CC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 222 24899999999999663222222 211 11 111 134432 235777788999996
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.9e-07 Score=92.30 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=89.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g-------------~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|.+|++||++....+... ..+ .....+++ .+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 5799999999999999999999999999998754322100 001 22345665 4789
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
||+|+.++|-..+.+..+-.+....++++++|+ |++.-.+ .+|.+.+.. .-...++-.+.+ ++ -.+-+
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~-~~r~~g~h~~~p-~~------~~~~v 152 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDR-PERFIGIHFMNP-VP------VMKLV 152 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEeeccCC-cc------cCceE
Confidence 999999999887766555567778889999998 6665443 356666532 112234444443 22 12445
Q ss_pred EEcCCCCCccHHHHHH
Q 006758 298 LILPRSADYSEEVWME 313 (632)
Q Consensus 298 IiTPHiAg~T~ea~~~ 313 (632)
-+.||.+ .+++..+.
T Consensus 153 ei~~g~~-t~~~~~~~ 167 (292)
T PRK07530 153 ELIRGIA-TDEATFEA 167 (292)
T ss_pred EEeCCCC-CCHHHHHH
Confidence 5677644 34444333
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-07 Score=90.20 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=82.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-CceecCCHHHHhc-cCCEEEEccCCChhhHhhc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-AARRMDTLNDLLA-ASDVISLHCAVTDETIQII 236 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-g~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~lI 236 (632)
+++|++|+|+|+|+||+.+|+.|..+|++|+++|++.......... +...+ +.++++. +||+++.|.. .++|
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~I 98 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGVI 98 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cccc
Confidence 5899999999999999999999999999999999876432211111 33333 4466665 7999987665 3689
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+++.+..|+ ..+++.-+-+.+.| ..-.+.|++..|.
T Consensus 99 ~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 99 NDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred CHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 999999997 56889999998876 4566677777775
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=91.23 Aligned_cols=132 Identities=21% Similarity=0.196 Sum_probs=83.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|.+|.+||++...... ....+ .....++.++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 36999999999999999999999999999998632210 00111 2345688899999
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
||+|+.++|...+.+..+-.+.-..+++.++++.... ......+.+.+..... ...|-+-+|+. -.|=|.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~~--~~~~hp~~p~~------~~~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS--ALLASAFTEHLAGRER--CLVAHPINPPY------LIPVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC--CCCHHHHHHhcCCccc--EEEEecCCCcc------cCceEE
Confidence 9999999998765444443333333455555543333 3345667777644222 45555544432 123356
Q ss_pred EcCCCC
Q 006758 299 ILPRSA 304 (632)
Q Consensus 299 iTPHiA 304 (632)
++||-+
T Consensus 153 iv~~~~ 158 (308)
T PRK06129 153 VVPAPW 158 (308)
T ss_pred EeCCCC
Confidence 788744
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=96.87 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=83.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------------------cccC-ceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-------------------FPSA-ARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-------------------~~~g-~~~~~sL~eLL~~ADVV 222 (632)
++|||||.|.||..+|..+...|++|++||+++...+.. ...+ ....+++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 479999999999999999999999999999986432210 0012 34567899999999999
Q ss_pred EEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC
Q 006758 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ 285 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~ 285 (632)
+.++|-..+.+..+-++.-..++++++|+....| + ....|.+.+.... ...++-+-+|+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg-i-~~s~l~~~~~~~~--r~~~~hP~nP~ 143 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG-F-LPSDLQEGMTHPE--RLFVAHPYNPV 143 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC-C-CHHHHHhhcCCcc--eEEEEecCCCc
Confidence 9999988876765545555667888765444444 3 2456766664422 24556554443
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-06 Score=93.24 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------------ccC-ceecCCHHHHhccCCEEE
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------------PSA-ARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-------------------~~g-~~~~~sL~eLL~~ADVV~ 223 (632)
+|||||+|.||..+|..|...|.+|++||++........ ..+ .....++.+++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 699999999999999999999999999998764322000 012 334467888899999999
Q ss_pred EccCCChh------hHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 224 LHCAVTDE------TIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 224 l~lPlT~~------T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
+|+|.... ...+. -......+++|.++|+.+.-.+--...+.+.+
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~ 134 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI 134 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence 99997532 11222 13456778999999999865444445565433
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-07 Score=89.65 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=66.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC-CCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG-KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~-~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
|+|++|+|||||..|.+.|.+|+..|++|++-.+... .-+..... ...+.++.|..+.||+|++.+|..-+ ..++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~-Gf~v~~~~eAv~~aDvV~~L~PD~~q-~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD-GFEVMSVAEAVKKADVVMLLLPDEVQ-PEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT-T-ECCEHHHHHHC-SEEEE-S-HHHH-HHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC-CCeeccHHHHHhhCCEEEEeCChHHH-HHHHHH
Confidence 6899999999999999999999999999999887764 22222223 34456999999999999999996433 345567
Q ss_pred HHHhccCCCcEEEEcCCCh
Q 006758 239 ECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~ 257 (632)
+....||+|+.|+ .+.|-
T Consensus 80 ~I~p~l~~G~~L~-fahGf 97 (165)
T PF07991_consen 80 EIAPNLKPGATLV-FAHGF 97 (165)
T ss_dssp HHHHHS-TT-EEE-ESSSH
T ss_pred HHHhhCCCCCEEE-eCCcc
Confidence 7888999999865 44554
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=96.33 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=78.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc----------------eecCCHHHHhccCCEEEE
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA----------------RRMDTLNDLLAASDVISL 224 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~----------------~~~~sL~eLL~~ADVV~l 224 (632)
..++|||||+|.||..+|..+.. |++|++||++....+. +..|. ....+..+.+++||+|++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~-l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILE-LKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHH-HHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 34689999999999999999877 7999999998754331 11111 123343457899999999
Q ss_pred ccCCC------hhhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 225 HCAVT------DETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 225 ~lPlT------~~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
|+|.. ++...++. ......+++|.++|+.+.-.+--.+.+++.+.
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l 135 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPIL 135 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHH
Confidence 99976 34455553 45678899999999999988877776544443
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.6e-07 Score=94.16 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=67.7
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||+|+|||.| .||+.||.+|...|++|.+|++.. .++.++.++||+|+++++.. +++.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~~v~ 217 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----RLID 217 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----hccc
Confidence 5899999999996 999999999999999999998653 27899999999999999963 4566
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
+.. +|+|+++||+|--.
T Consensus 218 ~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 218 ADW---LKPGAVVIDVGINR 234 (301)
T ss_pred Hhh---ccCCcEEEEecccc
Confidence 544 89999999999654
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-07 Score=80.23 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=63.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCC---CEEEEE-CCCCCCCCcc-cccCceecC-CHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVGRSASARALATRSLSFK---MSVLYF-DVPEGKGKVT-FPSAARRMD-TLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG---m~V~~~-dr~~~~~~~~-~~~g~~~~~-sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|||||+|+||..+++.+...| .+|.++ ++++...... ...+..... +..+++..||+|++++|-. ....++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 899955 8886533211 112223333 7899999999999999952 233333
Q ss_pred HHHHhccCCCcEEEEcCCC
Q 006758 238 AECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG 256 (632)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 333 667789999998654
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.2e-07 Score=90.34 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=99.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHH---hccCCEEEEccCCChhhHhhccHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL---LAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eL---L~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
++||.||+|+||..+.++|+.-|.+|++||++....+.....++....+|+++ |...-+|.+++|....|..+|+ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 46899999999999999999999999999999876654445556666777766 5567999999999988888874 6
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.-..|.+|-++|+-|...--|.....+.|.+..|. .|||
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~ 118 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDV 118 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEec
Confidence 77888999999999999999999999999999997 8998
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-07 Score=103.15 Aligned_cols=140 Identities=15% Similarity=0.126 Sum_probs=90.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCcccccCce--ecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~~~~~~g~~--~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|||||+|.||..+|+.++..| .+|++||++..........+.. ...++.+++..+|+|++|+|.. .+..++ .
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 67999999999999999999888 5899999986443221222322 2356888899999999999963 445554 3
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc---eEEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA---GCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~---GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiA 304 (632)
.....+++++++++++..+..-.+++.+.+....+. ...+-.-+. .......|+.-.+++++|+..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~ 152 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAE 152 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCC
Confidence 444567889999999986543344555554332221 011100010 112234577777888888644
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=95.66 Aligned_cols=107 Identities=10% Similarity=0.088 Sum_probs=75.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce--ecCCHHHH---------------hccCCEEEEc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDL---------------LAASDVISLH 225 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~--~~~sL~eL---------------L~~ADVV~l~ 225 (632)
++|+|||+|.||..+|..|+..|.+|++||++....+. ...+.. .-..++++ ++.||+|++|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 67999999999999999999999999999998653331 111110 01233333 3479999999
Q ss_pred cCCC------hhhHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 226 CAVT------DETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 226 lPlT------~~T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+|.. ++...+. -......+++|+++|+.+.-.+--.+.+...|.+
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 9974 2223332 2456778999999999998776666666666654
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.9e-07 Score=82.88 Aligned_cols=115 Identities=19% Similarity=0.173 Sum_probs=81.1
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc-cCc----eecCCHHHHhccCCEEEEccCCChh-h
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP-SAA----RRMDTLNDLLAASDVISLHCAVTDE-T 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~-~g~----~~~~sL~eLL~~ADVV~l~lPlT~~-T 232 (632)
+.+++++|+|.|.||..+++.+...| .+|.++|++......... .+. ....++.+++.++|+|++++|.... .
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC
Confidence 56889999999999999999999886 789999988643321111 111 2345778889999999999998654 1
Q ss_pred Hh-hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 233 IQ-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 233 ~~-lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
.. .+.. ..++++.+++|++..+.. . .|.+.+++..+. .++..
T Consensus 97 ~~~~~~~---~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~--~v~g~ 139 (155)
T cd01065 97 DELPLPP---SLLKPGGVVYDVVYNPLE-T-PLLKEARALGAK--TIDGL 139 (155)
T ss_pred CCCCCCH---HHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCc--eeCCH
Confidence 12 2332 236899999999886533 3 777777776543 44443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-06 Score=95.91 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=85.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~~ 218 (632)
++|||||.|.||..||..+...|++|++||++....+. ....+ +....++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 57999999999999999999999999999998754321 01112 234567766 569
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEE-EEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFL-VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvL-INvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
||+||.++|-..+.+..+-.+.-..++++++| +|++.-.+ .+|..++.. .=..+++..|.+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~P 148 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNP 148 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCC
Confidence 99999999999998888776655667899999 59988665 356666542 122346666664
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=92.18 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.0
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|.|||.|.+ |+.+|.+|...|++|.++.... .+|.+.+++||+|+.++| +.++|+
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t--------------~~l~~~~~~ADIVV~avG----~~~~i~ 216 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT--------------RDLAAHTRQADIVVAAVG----KRNVLT 216 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--------------CCHHHHhhhCCEEEEcCC----CcCccC
Confidence 489999999999999 9999999999999999976431 378899999999999999 457898
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
. ..+|+|+++||+|.-.+
T Consensus 217 ~---~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 217 A---DMVKPGATVIDVGMNRD 234 (285)
T ss_pred H---HHcCCCCEEEEcccccc
Confidence 7 66899999999997553
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.9e-07 Score=93.73 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=80.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.||.+.|.|||.+|+..|+.|++||++|++....+.... ........+.+++|+..+.||++.+.- .+.+|..+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~AL-QAaMeG~~V~tm~ea~~e~difVTtTG----c~dii~~~ 286 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICAL-QAAMEGYEVTTLEEAIREVDIFVTTTG----CKDIITGE 286 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHH-HHHhhccEeeeHHHhhhcCCEEEEccC----CcchhhHH
Confidence 5899999999999999999999999999999987775433 223345567899999999999998865 47889999
Q ss_pred HHhccCCCcEEEEcCCChh
Q 006758 240 CLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~i 258 (632)
+|.+||.++++.|+|.-.+
T Consensus 287 H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 287 HFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHhCcCCcEEeccccccc
Confidence 9999999999999988554
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.4e-06 Score=86.00 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=80.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------c----ccC-------------ceecCCHHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----------F----PSA-------------ARRMDTLNDL 215 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----------~----~~g-------------~~~~~sL~eL 215 (632)
++|+|||.|.||..+|..+...|++|++||++....+.. . ..+ .....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 579999999999999999999999999999886432200 0 001 1122345 56
Q ss_pred hccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 216 L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
+++||+|+.++|-..+.+.-+-++.-..++++++|+.+..|- ...+|.+.+.. .-..+++-.|.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~-~~r~ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALER-KDRFIGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCC-cccEEEEecCC
Confidence 789999999999877655555455556789999999887774 45666666643 22234444444
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=93.34 Aligned_cols=103 Identities=15% Similarity=0.076 Sum_probs=75.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------cC------ceecCCHHHHhccCCEEEEccC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SA------ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--------~g------~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.++|+|||.|.||..+|.+|...|.+|.+|+|+....+.... .+ .....++.+++..+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 357999999999999999999999999999997532110000 01 3345688898999999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCC-hhhc--HHHHHHHHHc
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSS-QLLD--DCAVKQLLID 270 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG-~iVD--e~AL~~AL~s 270 (632)
... + .+.+..++++.++|+++.| ..-+ ...+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 752 2 4566788999999999997 3332 3455555544
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=91.62 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=75.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm----~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|||||+|+||.+||+.|...|. +|+++|++....+.... .++....+..+++.+||+|++|+|- .....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 479999999999999999987664 79999987654332221 3444556788899999999999994 6666666
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
.+....+++++++|.+.-|- +.+.|.+.|
T Consensus 81 ~~l~~~~~~~~lvISi~AGi--~i~~l~~~l 109 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAGK--SIKSTENEF 109 (272)
T ss_pred HHHHHhhcCCcEEEEeCCCC--cHHHHHHhc
Confidence 34445578899999998874 444555554
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.1e-06 Score=85.17 Aligned_cols=139 Identities=16% Similarity=0.091 Sum_probs=89.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------cccc-------------CceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPS-------------AARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~-------------g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|.+|++||++....+. .... ......+++ .+.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 47999999999999999999999999999987643310 0001 112234555 4789
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
||+|+.++|-..+.+.-+-++....++++++|+....| +....|.+.+... -...++--+. |.+ -.|-|-
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~-P~~------~~~~ve 152 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFN-PVP------VMKLVE 152 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccC-Ccc------cCccEE
Confidence 99999999987777655556677788999999555444 4555777777432 1222333333 222 234555
Q ss_pred EcCCCCCccHHHHHH
Q 006758 299 ILPRSADYSEEVWME 313 (632)
Q Consensus 299 iTPHiAg~T~ea~~~ 313 (632)
+.|+ .+.+.+..+.
T Consensus 153 v~~g-~~t~~e~~~~ 166 (282)
T PRK05808 153 IIRG-LATSDATHEA 166 (282)
T ss_pred EeCC-CCCCHHHHHH
Confidence 7776 3344444433
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.1e-06 Score=86.67 Aligned_cols=105 Identities=18% Similarity=0.128 Sum_probs=71.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cC--------------ceecCCHHHHhccCCEEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SA--------------ARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g--------------~~~~~sL~eLL~~ADVV~ 223 (632)
++|+|||.|.||..+|..+...|++|++||++......... .+ .....++.+++.+||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 57999999999999999999999999999987643221000 00 123457888899999999
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+++|...+...-+-++.-..++++++|+....| +....|.+.+.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 999986643333323333446777777544444 23456766664
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.8e-06 Score=93.30 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=85.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccC-------------ceecCCHHHHhc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSA-------------ARRMDTLNDLLA 217 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g-------------~~~~~sL~eLL~ 217 (632)
=++|||||.|.||..||..+...|++|.+||++....+. ....+ .....++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 357999999999999999999999999999998654321 01111 223567765 56
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP 284 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P 284 (632)
+||+||.++|-..+.+..+-.+.-..++++++|. |++.-.+ ..|.+++.. .....++..|.++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pa 147 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPA 147 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcc
Confidence 9999999999988888887666667788888877 7766444 456666642 3345677767653
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=90.38 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=77.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh--CCCEEE-EECCCCCCCCccc-ccC-ceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS--FKMSVL-YFDVPEGKGKVTF-PSA-ARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka--fGm~V~-~~dr~~~~~~~~~-~~g-~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
...+|||||+|.||+.+|+.+.. .+++|. ++|++........ ..+ ...+.++++++.++|+|++|+|.... .-
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence 34789999999999999999985 588876 6787753322111 112 23467899999999999999996332 22
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+ ....++.|.-++..+.|.+.+.++|.++.+++...
T Consensus 83 ~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 83 I---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred H---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2 23335667767778889888889999988876543
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=91.19 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=71.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--------------ccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF--------------PSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--------------~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||+|.||..+|..|...|.+|.+|+++....+... ..+.....++++++..+|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 3699999999999999999999999999998753221000 01233456788899999999999996
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
..+..++. .....+++++++|++..|--
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeeccc
Confidence 56666663 45566789999999976543
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=82.31 Aligned_cols=89 Identities=22% Similarity=0.387 Sum_probs=74.8
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.|.|++|.|||.|.+ |..+|+.|...|++|.+.+++. .++.+.+.+||+||.+.+.. ++|.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii~ 102 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLVK 102 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----ceec
Confidence 479999999999996 8889999999999999999763 36788999999999999863 3788
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~G 275 (632)
.+. ++++.++||+|....+| ..+|++.|
T Consensus 103 ~~~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 103 GDM---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred HHH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 875 57899999999988887 45556554
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.4e-06 Score=88.97 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=75.4
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCC-----cccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 174 ARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 174 G~~vA~~LkafGm~V~~~dr~~~~~~-----~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
|..||++|...|.+|++||++..... .....|+...++..+++++||+|++|+|..+.++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 89999999999999999998764321 1223466677889999999999999999988888888 56889999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHc
Q 006758 249 FLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 249 vLINvgRG~iVDe~AL~~AL~s 270 (632)
++||++. ++...++..|+.
T Consensus 111 IVID~ST---IsP~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCT---VSPVVLYYSLEK 129 (341)
T ss_pred EEEECCC---CCHHHHHHHHHH
Confidence 9999977 556666666665
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.6e-06 Score=88.21 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=66.3
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEEC-CCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFD-VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~d-r~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
++.|++|+||| .|.+|+.||.+|..-|++|.+|+ ++. ++.+++++||+|+++++... ++
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----hc
Confidence 47999999999 99999999999999999999996 432 57899999999999999744 45
Q ss_pred cHHHHhccCCCcEEEEcCCChh
Q 006758 237 NAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~i 258 (632)
.+.. +|+|+++||+|--.+
T Consensus 216 ~~~~---lk~GavVIDvGin~~ 234 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINRI 234 (296)
T ss_pred chhe---ecCCCEEEEcCCccc
Confidence 5533 899999999987553
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=4e-06 Score=87.08 Aligned_cols=104 Identities=10% Similarity=0.124 Sum_probs=74.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCC-Ccc-cccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKG-KVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~-~~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
+++|||||+|+||.+||+.|...| .+|.+++|+.... ... ...++....+..+++..||+|++++|. .....+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHHH
Confidence 468999999999999999999877 6899999865221 111 112444556888899999999999995 344455
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+ ......++++.+||++.-|- ..+.|.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 4 34555678899999986553 4555665543
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-06 Score=92.48 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=88.9
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cCceecCCHHHHhcc---CCEEEEccCCChhhHhhccHHHHhcc
Q 006758 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDLLAA---SDVISLHCAVTDETIQIINAECLQHI 244 (632)
Q Consensus 173 IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eLL~~---ADVV~l~lPlT~~T~~lI~~~~L~~M 244 (632)
||+.||++|...|.+|.+|||+....+.... .++....++.+++.. +|+|++++|..+.+..+| ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 7999999999999999999999754432221 135667899998875 899999999999999998 4688999
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 245 K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+|.++||++....-|...+.+.+.+..+. .+|+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~--fvda 113 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIH--FIGM 113 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCe--EEec
Confidence 999999999999999999999999988876 6664
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.7e-06 Score=85.66 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=66.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|+|||. |.+|+.||.+|...|++|.+|.... .++.+.+++||+|+.+++.. +++.
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVI~avg~~----~~v~ 216 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT--------------RNLAEVARKADILVVAIGRG----HFVT 216 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEecCcc----ccCC
Confidence 489999999999 9999999999999999999993221 27899999999999999963 4566
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
... +|+|+++||+|--.
T Consensus 217 ~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 217 KEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred HHH---ccCCcEEEEeccee
Confidence 544 89999999998654
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-06 Score=81.02 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=71.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCC---ccccc---CceecCCHHHHhccCCEEEEccCCChh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGK---VTFPS---AARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~---~~~~~---g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
.++|+++.|||.|.+|+.++..|...|++ |.+++|+..... ..+.. ....+.++.+.+..+|+|+.+.|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 58999999999999999999999999996 999999864332 11111 123456777889999999999997443
Q ss_pred hHhhccHHHHhccCCCc-EEEEcCCChhh
Q 006758 232 TIQIINAECLQHIKPGA-FLVNTGSSQLL 259 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GA-vLINvgRG~iV 259 (632)
+|.++.+...++.. ++++.+.-.-|
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCC
Confidence 77888877665443 77777654333
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.3e-06 Score=85.29 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=73.6
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCcccc--cCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTFP--SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm----~V~~~dr~~~~~~~~~~--~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|||||+|.||..+|+.|...|. +|.+|+|+......... .+.....+..+++..+|+|++++|- .....++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH-
Confidence 69999999999999999988773 79999998643221111 1344456788889999999999983 3455555
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
.+....++++.++|.++-| +..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3445567888999999865 35666666554
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-05 Score=84.53 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=68.0
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+.|+++.|||.|. +|+.+|.+|...|++|.+++++. .+|.+.+.+||+|+.+++. .++|.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~i~ 216 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGLVT 216 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----CcccC
Confidence 48999999999999 99999999999999999998642 3688999999999999986 45788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
++. +|+|+++||+|--.
T Consensus 217 ~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 217 KDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred HHH---cCCCcEEEEcCCCc
Confidence 764 68999999999754
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.5e-06 Score=84.40 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=72.2
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccc-c-CceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 164 VLGIVGRSASARALATRSLSFKM---SVLYFDVPEGKGKVTFP-S-AARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~-~-g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
+|||||+|+||+.+++.|...|. .|.+++++......... . +.....+..+++.++|+|++++| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 69999999999999999987774 35788887543221111 1 23445688899999999999999 3455555532
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+ .+++|.++|.+.- -+..+.|.+.+..
T Consensus 81 --l-~~~~~~~vis~~a--g~~~~~l~~~~~~ 107 (258)
T PRK06476 81 --L-RFRPGQTVISVIA--ATDRAALLEWIGH 107 (258)
T ss_pred --h-ccCCCCEEEEECC--CCCHHHHHHHhCC
Confidence 3 3578999999873 3666777777654
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.3e-06 Score=83.86 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH--hhCCCEEEE-
Q 006758 114 RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS--LSFKMSVLY- 190 (632)
Q Consensus 114 na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L--kafGm~V~~- 190 (632)
.+...++|.+..++...|++. .|. ...+|+|||+|.+|+.+++.+ ...|++|++
T Consensus 59 ~G~~~~gy~v~~l~~~~~~~l----------~~~-------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv 115 (213)
T PRK05472 59 FGKRGVGYNVEELLEFIEKIL----------GLD-------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAA 115 (213)
T ss_pred cCCCCCCeeHHHHHHHHHHHh----------CCC-------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEE
Confidence 335556788888887776643 121 245799999999999999863 357898776
Q ss_pred ECCCCCCCCcccc-cCceecCCHHHHhcc--CCEEEEccCCChh---hHhhccHHHHhccCCCcEEEEcCCChhhcHHHH
Q 006758 191 FDVPEGKGKVTFP-SAARRMDTLNDLLAA--SDVISLHCAVTDE---TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAV 264 (632)
Q Consensus 191 ~dr~~~~~~~~~~-~g~~~~~sL~eLL~~--ADVV~l~lPlT~~---T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL 264 (632)
+|+++........ ..+..+.++.+++.. .|+|++++|.+.. +..+.......-|...++.+|+.+|.+|+..+|
T Consensus 116 ~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l 195 (213)
T PRK05472 116 FDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDL 195 (213)
T ss_pred EECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEech
Confidence 5665422211111 112234578888865 9999999998775 333444444566677889999999999999999
Q ss_pred HHHHHc
Q 006758 265 KQLLID 270 (632)
Q Consensus 265 ~~AL~s 270 (632)
..+|..
T Consensus 196 ~~~l~~ 201 (213)
T PRK05472 196 TVELQT 201 (213)
T ss_pred HHHHHH
Confidence 999873
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.8e-05 Score=86.70 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=73.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----------------cCcee--cCCHHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----------------SAARR--MDTLNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~----------------~g~~~--~~sL~eLL~~ADVV~l~ 225 (632)
+|+|||+|.||..+|..+. .|++|++||++....+.... ..... ..+..+++..||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997666 59999999998643221000 11112 22366788999999999
Q ss_pred cCCCh----------hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 226 CAVTD----------ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 226 lPlT~----------~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
+|..- ..+..+ +.... +++|.++|+.+.-.+=-.+.+.+.+.+.
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~ 134 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTE 134 (388)
T ss_pred CCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcC
Confidence 99651 122222 23344 7999999999998877777777776653
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.02 E-value=6.7e-05 Score=84.75 Aligned_cols=180 Identities=12% Similarity=0.125 Sum_probs=106.2
Q ss_pred cceEEEEecCCCCCHHHHhcCCCceEEEEe-cccCCccchHHHHhcCcEEEEcCCCC----------hHHHHHHHHHHH-
Q 006758 59 AAAAVLLHSLAYLPRAAQRRLRPYQLILCL-GSSDRTVDSALAADLGLRLIHVDTSR----------AEEIADTVMALL- 126 (632)
Q Consensus 59 dAdaIli~s~~~L~~evL~~lp~LK~I~~~-gaG~D~VD~~aa~erGI~VtNvpg~n----------a~aVAE~ALali- 126 (632)
++|+|+--. +.+.+.++.++.=+.+.+. .-..+.=-++++.++||.+..-.... -.++|+.+=...
T Consensus 64 ~adiIlkV~--~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 64 QSDIILKVN--APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 467766332 2345567777664444443 33333223466788899888743111 123333331111
Q ss_pred HHHHhhcHHHHHHHHHhcCCC-CCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC
Q 006758 127 LGLLRRTHLLARHALSASGWL-GSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA 205 (632)
Q Consensus 127 Lal~Rrl~~~~~~~~~~g~W~-~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g 205 (632)
+..+..+ +++. +...+. ..+.+.++.|+|.|.+|...+..++.+|+.|.++|++....+.....+
T Consensus 142 i~Aa~~l----------gr~~~g~~taa----g~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG 207 (511)
T TIGR00561 142 IEAAHEF----------GRFFTGQITAA----GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG 207 (511)
T ss_pred HHHHHHh----------hhhcCCceecC----CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 1111111 1111 111111 135678999999999999999999999999999998764332111111
Q ss_pred cee--cC---------------C----------HHHHhccCCEEEEcc--CCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 206 ARR--MD---------------T----------LNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 206 ~~~--~~---------------s----------L~eLL~~ADVV~l~l--PlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
... ++ + +.+.++.+|+|+.++ |..+ ...+|.++.++.||+|+++||++-
T Consensus 208 a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 208 AEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred CeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 111 00 1 456678899999988 3322 235889999999999999999975
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.7e-05 Score=75.90 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=65.8
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------------cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------------VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~--------------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+|+|||.|+.|.++|..|...|.+|..|.++....+ ...+.......+++++++.+|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 589999999999999999999999999999842111 112223344678999999999999999963
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
. .+.++ +.....++++..+|++.-|=
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCCc
Confidence 3 34444 45666678899999998764
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.6e-06 Score=75.88 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=55.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCCCCCc-ccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~~~~~~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
...+|||||.|++|..+++.|...|..|.++ +|+....+. ....+...+.++++++..+|+|++++|... ...+ -+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~v-a~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEV-AE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHH-HH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHH-HH
Confidence 5578999999999999999999999998876 455422211 111223345688999999999999999753 2233 23
Q ss_pred HHHhc--cCCCcEEEEcC
Q 006758 239 ECLQH--IKPGAFLVNTG 254 (632)
Q Consensus 239 ~~L~~--MK~GAvLINvg 254 (632)
+.-.. .++|.++|-|+
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 33333 68999999985
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.7e-05 Score=73.37 Aligned_cols=79 Identities=24% Similarity=0.367 Sum_probs=59.6
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||.+. +|+.+|.+|...|+.|..++.+. .++.+.+.+||+|+.+++- .++|.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~----~~~i~ 94 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGK----PNLIK 94 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSS----TT-B-
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecc----ccccc
Confidence 48999999999995 99999999999999999987653 3788999999999999975 56787
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+ .+|+|+++||+|.-.+
T Consensus 95 ~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 95 AD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp GG---GS-TTEEEEE--CEEE
T ss_pred cc---cccCCcEEEecCCccc
Confidence 64 5789999999998665
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=6e-05 Score=65.08 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=56.5
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
+.+++++|+|.|.+|+.++..+..+ +.+|.++|+ |+|+.+.+- .+++.+
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~----~~~~~~ 70 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPA----GVPVLE 70 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCC----CCCchH
Confidence 6899999999999999999999998 678999988 999999875 355666
Q ss_pred HHHhccCCCcEEEEcC
Q 006758 239 ECLQHIKPGAFLVNTG 254 (632)
Q Consensus 239 ~~L~~MK~GAvLINvg 254 (632)
+.+..|++++++++++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 6788899999999874
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.7e-06 Score=78.37 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=68.2
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---cccccC-----------------------ceecCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSA-----------------------ARRMDT 211 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~~~~~g-----------------------~~~~~s 211 (632)
..+...+|.|+|.|+.|+..++.++++|++|..+|....... ...... ..+...
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 457788999999999999999999999999999998653211 000000 111235
Q ss_pred HHHHhccCCEEEEcc-CCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 212 LNDLLAASDVISLHC-AVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 212 L~eLL~~ADVV~l~l-PlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
|.+.++.+|+|++++ -..+..-.+|..+.++.||+|.+||+++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 788899999998644 3455677899999999999999999985
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.7e-05 Score=74.18 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=76.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------c-----------------ccccCceecCCHHHHhccC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------V-----------------TFPSAARRMDTLNDLLAAS 219 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------~-----------------~~~~g~~~~~sL~eLL~~A 219 (632)
+|+|||.|.||..+|..+...|++|..||++..... . ..........+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999864321 0 0001223457889888 99
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
|+|+=++|-.-+.+.-+-++.-+.++++++|...+++ +....|..++. ..-...++=.|.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFN 139 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEeccc
Confidence 9999999988888777777777888999998776554 34455655553 233334444443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.2e-05 Score=79.35 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=66.6
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|.+|...|++|.++.... .+|.+.+.+||+|+.+++- .++|.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~----p~~v~ 217 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGK----PGFIP 217 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCC----ccccc
Confidence 48999999999999 99999999999999999997542 3789999999999999953 24677
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
. ..+|+|+++||+|--.
T Consensus 218 ~---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 218 G---EWIKPGAIVIDVGINR 234 (285)
T ss_pred H---HHcCCCcEEEEccccc
Confidence 6 5578999999999544
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=4e-05 Score=79.91 Aligned_cols=102 Identities=11% Similarity=0.221 Sum_probs=71.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCccc-c-c-CceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTF-P-S-AARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~~~~~-~-~-g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
.+|+|||+|+||..+|+.|...| .+|.+|+++........ . . +.....+..+++..+|+|++|+|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 36999999999999999998877 68999988642211000 1 1 222346788889999999999993 334444
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
+ .+....++++.+||.+.-| +..+.|.+.+
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~ 110 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEIT 110 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHc
Confidence 4 3333456788899998877 4555676655
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.2e-05 Score=79.29 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=68.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC---CEEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSFK---MSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG---m~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|+|||+|.||..+|..+...| .+|.+++|+....+.... .+.....+..+++..+|+|++++|- .....++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~- 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLS- 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHH-
Confidence 47999999999999999999888 789999998643221111 1334456788889999999999984 23444432
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
.....+ +.++|.+.-|- ..+.|.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 222223 46788886654 4455665553
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.6e-05 Score=76.30 Aligned_cols=91 Identities=18% Similarity=0.170 Sum_probs=65.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---cccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~---~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
++++|+|.|+||..+|+++...|.+|.+-+++....... +-.......+..+..+.+|||++++|+..- .++ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence 579999999999999999999999999997665432200 001112335788899999999999998443 233 245
Q ss_pred HHhccCCCcEEEEcCCC
Q 006758 240 CLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG 256 (632)
....+. |.++|++.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 555565 8899998763
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.7e-05 Score=78.96 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=102.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc-CCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA-SDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~-ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.-.+|||||+|++|+-+|..+...|..|..+||..-. ..+...|...++.+++++++ +|+|++|+-. ..+..++-.-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-saa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilaty 128 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-SAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATY 128 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-HHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhc
Confidence 4567999999999999999999999999999998632 22333456667888888765 8999999864 2344555444
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC--CCCCCCccccCCCcEEEcCCCCC
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE--~P~~~~~pL~~~pNVIiTPHiAg 305 (632)
-++++|.|++++++-+.+...-+++.+-|-+.-- .|-+.. .|...++.+..+|=|++-=.++.
T Consensus 129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfD---IlctHpmfGPksvnh~wqglpfVydkvRig~ 193 (480)
T KOG2380|consen 129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFD---ILCTHPMFGPKSVNHEWQGLPFVYDKVRIGY 193 (480)
T ss_pred CchhhccceeEeeeeecchhHHHHHHHhCccccc---eEeecCCcCCCcCCCccccCceEEEEeeccc
Confidence 5678999999999999998888888888765321 222222 25545666667888887766553
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.1e-05 Score=86.71 Aligned_cols=100 Identities=14% Similarity=0.209 Sum_probs=71.4
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.|++|+|||.|.||..+++.|+.+| .+|++++++..... ..+........++.+++..+|+|+.+++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 68999999864322 11111122335677889999999999664 446
Q ss_pred hccHHHHhccCC----CcEEEEcCCChhhcH
Q 006758 235 IINAECLQHIKP----GAFLVNTGSSQLLDD 261 (632)
Q Consensus 235 lI~~~~L~~MK~----GAvLINvgRG~iVDe 261 (632)
+|+.+.+..+.+ ..++|+.+...=||.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 788887776522 347777765433443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=6e-05 Score=79.23 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=68.1
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|.|||.+ ..|+.+|.++..+|++|..+..+. .+|.+.+.+||+|+.+++.. ++|.
T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~----~lv~ 210 (279)
T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKA----GFIT 210 (279)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcc----cccC
Confidence 4899999999999 999999999999999999987542 37899999999999999742 6788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
++.+ |+|+++||+|-..
T Consensus 211 ~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 211 PDMV---KPGATVIDVGINQ 227 (279)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 8774 9999999999654
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.2e-05 Score=78.46 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=66.4
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|.+|...|++|.+++... .+|.+...+||+|+.++.- .++|.
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~----p~~i~ 222 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGV----KHLIK 222 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCC----ccccC
Confidence 48999999999999 99999999999999999998532 3688999999999998765 35787
Q ss_pred HHHHhccCCCcEEEEcCCC
Q 006758 238 AECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG 256 (632)
.+ .+|+|+++||+|--
T Consensus 223 ~~---~vk~gavVIDvGin 238 (287)
T PRK14176 223 AD---MVKEGAVIFDVGIT 238 (287)
T ss_pred HH---HcCCCcEEEEeccc
Confidence 75 57899999999964
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.7e-05 Score=77.83 Aligned_cols=78 Identities=26% Similarity=0.341 Sum_probs=65.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+.|+++.|||.|. +|+++|..|...|++|.++++.. .+|.+.+.+||+|+.+++. + ++|.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~-~---~~v~ 217 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGK-P---ELIK 217 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCC-C---CcCC
Confidence 47999999999998 99999999999999999998721 3678888999999999972 3 3677
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||++-..
T Consensus 218 ~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 218 KDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred HHH---cCCCCEEEEEEEee
Confidence 654 78999999998654
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.1e-05 Score=78.47 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=66.9
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|.|||.| .+|+.+|.+|...|++|.++.... .+|.+.+.+||+|+.+++- .++|.
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~----p~~i~ 215 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGK----PDLIK 215 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCC----CCcCC
Confidence 4799999999999 999999999999999999985432 3578999999999999974 56788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+.+ |+|+++||+|-..
T Consensus 216 ~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 216 ASMV---KKGAVVVDIGINR 232 (285)
T ss_pred HHHc---CCCcEEEEeeccc
Confidence 7665 8999999999655
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.3e-05 Score=77.73 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=78.6
Q ss_pred HHHHHhhCC--CEEEEECCCCCCCCcccccCcee-cCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 177 LATRSLSFK--MSVLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 177 vA~~LkafG--m~V~~~dr~~~~~~~~~~~g~~~-~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
+|+.|+..| .+|++||++..........|+.. ..+-.+.+.++|+|++|+|.. .+..++ .+....+++|++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 467777666 89999999875444332334332 122257889999999999973 355555 4566679999999999
Q ss_pred CCChhhcHHHHHHHHH--cCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCC
Q 006758 254 GSSQLLDDCAVKQLLI--DGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 254 gRG~iVDe~AL~~AL~--sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiA 304 (632)
++-+.--.+++.+.+. ...+.+..+=..|. +......|++--++++||+-.
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 9977655566666655 23355555544443 444556788888999999855
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00022 Score=71.42 Aligned_cols=91 Identities=23% Similarity=0.186 Sum_probs=66.7
Q ss_pred ccccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCc-ccccCceec--CC----HHHHhccCCEEEEccCCC
Q 006758 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKV-TFPSAARRM--DT----LNDLLAASDVISLHCAVT 229 (632)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~-~~~~g~~~~--~s----L~eLL~~ADVV~l~lPlT 229 (632)
.++.||++.|||.+. +|+.+|.+|..-|++|..+|.+...... ......... .+ +.+.+.+||||+.+++-
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~- 136 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS- 136 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC-
Confidence 468999999999987 5999999999999999999754311100 000000000 12 78999999999999985
Q ss_pred hhhHhh-ccHHHHhccCCCcEEEEcCC
Q 006758 230 DETIQI-INAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~T~~l-I~~~~L~~MK~GAvLINvgR 255 (632)
.++ |..+. +|+|+++||+|-
T Consensus 137 ---~~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 137 ---PNYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred ---CCCccCHHH---cCCCcEEEEcCC
Confidence 456 77755 679999999994
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.7e-05 Score=75.24 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=77.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC------ccc-c-------------cCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK------VTF-P-------------SAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~------~~~-~-------------~g~~~~~sL~eLL~~ADVV 222 (632)
++|+|||+|.+|..+|..+...|++|++||.+..... ..+ + .......+..+.+.+||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 5799999999999999999999999999998753111 000 0 1123345778889999999
Q ss_pred EEccCCChhhHh------hc--cHHHHhccCCCcEEEEcCCChhhcHHH-HHHHHHcCCcceEEeecCCCCC-----CCC
Q 006758 223 SLHCAVTDETIQ------II--NAECLQHIKPGAFLVNTGSSQLLDDCA-VKQLLIDGTLAGCALDGAEGPQ-----WME 288 (632)
Q Consensus 223 ~l~lPlT~~T~~------lI--~~~~L~~MK~GAvLINvgRG~iVDe~A-L~~AL~sg~I~GAaLDVfE~P~-----~~~ 288 (632)
++|+|....-.+ +. -......++++.++|.-+.-.+=-.+. +...|++....+.-+++...|- ..-
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 999985433222 21 235667789999999999877655553 3444443332222233322221 112
Q ss_pred ccccCCCcEE
Q 006758 289 AWVREMPNVL 298 (632)
Q Consensus 289 ~pL~~~pNVI 298 (632)
..+...|.||
T Consensus 161 ~d~~~~~rvV 170 (185)
T PF03721_consen 161 EDFRNPPRVV 170 (185)
T ss_dssp HHHHSSSEEE
T ss_pred hhccCCCEEE
Confidence 3566667776
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.1e-05 Score=79.30 Aligned_cols=129 Identities=12% Similarity=0.193 Sum_probs=90.4
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---cccccCce----ecCCHHHHhccCCEEEEccCCCh
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSAAR----RMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~~~~~g~~----~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
..+...+|.|||.|-+|..-|+++.++|.+|.+.|.+..... ..+...+. ....+++.+..+|+||.++=...
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC
Confidence 346777899999999999999999999999999998854332 22222211 13457899999999998764322
Q ss_pred -hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC--CCCCCCccccCCCcEE--EcCCCCC
Q 006758 231 -ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVL--ILPRSAD 305 (632)
Q Consensus 231 -~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE--~P~~~~~pL~~~pNVI--iTPHiAg 305 (632)
..-.++.++.++.||||++||+++ ++.|.+ || +|...+.|.+....|+ +-|.+-|
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA-------------iDqGGc-------~Et~~~TTh~~PtY~~~gvvhY~VaNmPg 303 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA-------------IDQGGC-------FETSHPTTHDDPTYEVDGVVHYGVANMPG 303 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE-------------EcCCCc-------eeccccccCCCCceeecCEEEEecCCCCc
Confidence 355678899999999999999984 344443 33 2555556666666654 5555444
Q ss_pred c
Q 006758 306 Y 306 (632)
Q Consensus 306 ~ 306 (632)
.
T Consensus 304 a 304 (371)
T COG0686 304 A 304 (371)
T ss_pred c
Confidence 3
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00024 Score=67.55 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=66.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|++|.|+|-+. +|+.+|.+|...|++|..++.+. .++++.+++||+|+.+++.. ++|+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~i~ 86 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EKVP 86 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----CccC
Confidence 58999999999875 69999999999999999998643 27888999999999999864 5688
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|||+++|+++...
T Consensus 87 ~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 87 TEW---IKPGATVINCSPTK 103 (140)
T ss_pred HHH---cCCCCEEEEcCCCc
Confidence 755 78999999998755
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00029 Score=79.76 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=104.7
Q ss_pred cceEEEEecCCCCCHHHHhcCCCceEEEE-ecccCCccchHHHHhcCcEEEEcCCCC----h------HHHHHHHHHHHH
Q 006758 59 AAAAVLLHSLAYLPRAAQRRLRPYQLILC-LGSSDRTVDSALAADLGLRLIHVDTSR----A------EEIADTVMALLL 127 (632)
Q Consensus 59 dAdaIli~s~~~L~~evL~~lp~LK~I~~-~gaG~D~VD~~aa~erGI~VtNvpg~n----a------~aVAE~ALaliL 127 (632)
++|+|+.-. ..+.+.++.++.=+.+.+ .....+.=-++++.++||.+..-.... + .++|+.+=
T Consensus 65 ~~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG---- 138 (509)
T PRK09424 65 QSDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG---- 138 (509)
T ss_pred cCCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH----
Confidence 577777432 234556777766554443 333333333566788899888732211 0 22333221
Q ss_pred HHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce
Q 006758 128 GLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR 207 (632)
Q Consensus 128 al~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~ 207 (632)
.|-+....+. -+...... -... ....+.+|.|+|.|.||...+..++.+|++|+++|++....+.....|+.
T Consensus 139 --y~Av~~aa~~---~~~~~~g~-~taa--G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 139 --YRAVIEAAHE---FGRFFTGQ-ITAA--GKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred --HHHHHHHHHH---hcccCCCc-eecc--CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 1111111111 11111100 0001 13569999999999999999999999999999999886443322122222
Q ss_pred e--cC-----------------C--------HHHHhccCCEEEEccCCChh-hHhhccHHHHhccCCCcEEEEcCC
Q 006758 208 R--MD-----------------T--------LNDLLAASDVISLHCAVTDE-TIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 208 ~--~~-----------------s--------L~eLL~~ADVV~l~lPlT~~-T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
. .+ + +.+.+..+|+||.+...... ...+|.++.++.||+|.++|++|=
T Consensus 211 ~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 211 FLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred EEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1 10 1 11223579999999865321 234567889999999999999964
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.6e-05 Score=77.10 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=68.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCE-EEEECCCCCCCCcc-cccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMS-VLYFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~-V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+.+++.+... +++ +.++|++....... ...+...+.++++++.++|+|++|.|...- . +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~----~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-E----E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-H----H
Confidence 3799999999999999998865 576 45678875332211 012334567899999999999999874221 1 1
Q ss_pred HHHhccCCCcEEEEcCCChhhcH---HHHHHHHHcCC
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGT 272 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe---~AL~~AL~sg~ 272 (632)
-....|+.|.-+|..+-|.+.|. +.|.++.+++.
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence 22233455666666777777664 35666666544
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.7e-05 Score=79.15 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=62.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
+.|++|+|||.|.||+.+++.|+..| .+|.+++|+..... ..+.......+++.+.+..+|+|+.++|...- ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 68999999999999999999999876 58999999864321 11111122234567888899999999996433 222
Q ss_pred ccHHHHhcc-CCCcEEEEcCC
Q 006758 236 INAECLQHI-KPGAFLVNTGS 255 (632)
Q Consensus 236 I~~~~L~~M-K~GAvLINvgR 255 (632)
+ +..+... +++.++||++.
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2233222 24667776664
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=74.75 Aligned_cols=108 Identities=8% Similarity=0.023 Sum_probs=71.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-----------eecCCHHHHhccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-----------RRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-----------~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++|+|||.|.||..+|..|...|.+|.+++++....+.....+. ....++.++ ..+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 36999999999999999999999999999985432210000111 113445555 8999999999953 4
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+..++ +.....+.+++.+|...-| +-.++.+.+.+....+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 45554 2344556778888888776 32345566656554544
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0001 Score=74.15 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=62.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------cCc---eecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SAA---RRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--------~g~---~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+||| .|+||..+|..|...|.+|.+++++......... .+. ....+..+.+..+|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 3699997 9999999999999999999999987633211000 011 122366788999999999999633
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
...++ ++.-..++ +.++|++.-|-
T Consensus 81 -~~~~l-~~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 81 -VLKTL-ESLRDELS-GKLVISPVVPL 104 (219)
T ss_pred -HHHHH-HHHHHhcc-CCEEEEeccCc
Confidence 33333 22223343 58999997764
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00015 Score=78.30 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=73.5
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCC-----CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 174 ARALATRSLSFKMSVLYFDVPEGKG-----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 174 G~~vA~~LkafGm~V~~~dr~~~~~-----~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
|..+|.+|...|.+|++||++.... ......++....+..+++.+||+|++++|....++.++ ......+++|+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 7999999999999999999876421 11122355556688899999999999999765577877 46778899999
Q ss_pred EEEEcCCChhhcH-HHHHHHHH
Q 006758 249 FLVNTGSSQLLDD-CAVKQLLI 269 (632)
Q Consensus 249 vLINvgRG~iVDe-~AL~~AL~ 269 (632)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999887665 55666664
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=72.29 Aligned_cols=105 Identities=11% Similarity=0.124 Sum_probs=67.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC---CE-EEEECCC-CCCCCc-ccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFK---MS-VLYFDVP-EGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG---m~-V~~~dr~-~~~~~~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.+|||||.|.||..+|..+...| .+ |++++++ ...... ....++....++++++.++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999987665 33 7777764 222211 11123444568889999999999999953 3333
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++ .+.-..++ +.+||.+.=| +..+.|.+.+..
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~ 113 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPK 113 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence 33 22222334 6788998766 344456665543
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.6e-05 Score=82.02 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=65.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.|++|+|||.|.||..+++.|...|+ +|++++++..... ..+........++.+.+..+|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 8999999864322 111111222345667788999999997743 34
Q ss_pred hccHHHHhcc-----CCCcEEEEcCC
Q 006758 235 IINAECLQHI-----KPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~M-----K~GAvLINvgR 255 (632)
+|..+.+..+ ..+.++|+++-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 5666666554 23456666653
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00016 Score=76.66 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=73.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC-----------------ceecCCHHHHhccCCEEEEc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-----------------ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g-----------------~~~~~sL~eLL~~ADVV~l~ 225 (632)
++|+|||.|.||..+|..|...|.+|.+|++...... ....+ .....++ +.+..+|+|+++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDE-LRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHH-HHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 4699999999999999999999999999998642110 00001 0112344 567899999999
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+|.. ++..++ ......+++++++|.+.-| +...+.+.+.+...++.
T Consensus 81 vk~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 81 VKSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred ecCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 9864 445555 3456667899999988654 33445666666554443
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.53 E-value=8.1e-05 Score=84.42 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=63.6
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---ccc-C--ceecCCHHHHhccCCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FPS-A--ARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~---~~~-g--~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
+.+++|+|||.|.||+.+++.|...|+ +|++++|+....... +.. . ...++++.+++..+|+|+++.|. +
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s---~ 340 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS---E 340 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---C
Confidence 779999999999999999999999997 799999986443211 110 0 11235677889999999998764 4
Q ss_pred HhhccHHHHhccCC
Q 006758 233 IQIINAECLQHIKP 246 (632)
Q Consensus 233 ~~lI~~~~L~~MK~ 246 (632)
..+|..+.+..|++
T Consensus 341 ~pvI~~e~l~~~~~ 354 (519)
T PLN00203 341 TPLFLKEHVEALPP 354 (519)
T ss_pred CCeeCHHHHHHhhh
Confidence 56788888887753
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00025 Score=73.69 Aligned_cols=108 Identities=10% Similarity=0.102 Sum_probs=72.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC-------------ceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------------ARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g-------------~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.||..+|..|...|.+|.+|++ ....+.....+ .....++.++...+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 3699999999999999999999999999998 32111000000 011345666778999999999953
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++..++ ......+++++++|.+.-| +-..+.+.+.+...++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 344444 3344456778888877665 33456677776555544
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00036 Score=73.62 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=67.3
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|.+++... .+|.+.+.+||+|+.+++- .++|+
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~----p~~i~ 216 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGK----PKLIT 216 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCC----CCcCC
Confidence 48999999999986 69999999999999999986432 3788999999999999974 45899
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+.+ |+|+++||+|.-.+
T Consensus 217 ~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 217 ADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred HHHc---CCCCEEEEeecccc
Confidence 8775 89999999997653
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00046 Score=72.78 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=66.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|.++.... .+|.+.+.+||||+.+++- .++|.
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~----~~~i~ 215 (284)
T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGL----AKFVK 215 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 58999999999986 69999999999999999986532 3688999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 216 ~~~---vk~GavVIDvGin~ 232 (284)
T PRK14170 216 KDY---IKPGAIVIDVGMDR 232 (284)
T ss_pred HHH---cCCCCEEEEccCcc
Confidence 755 67999999999765
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00044 Score=73.07 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=66.2
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||.+. +|+.+|.+|..-|++|.++.... .+|.+.+.+||||+.++.- .++|.
T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGk----p~~i~ 217 (288)
T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGS----PLKLT 217 (288)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----CCccC
Confidence 48999999999986 69999999999999999887532 3689999999999999984 36888
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 218 ~~~---vk~GavVIDvGin~ 234 (288)
T PRK14171 218 AEY---FNPESIVIDVGINR 234 (288)
T ss_pred HHH---cCCCCEEEEeeccc
Confidence 855 67999999999543
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00032 Score=73.83 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=66.3
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.| .+|+.+|.+|..-|++|..+.... .+|.+.+++||+|+.+++- .++|.
T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGk----p~~i~ 215 (281)
T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGK----PNLIT 215 (281)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCc----ccccC
Confidence 5899999999999 899999999999999999886432 3678999999999999974 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 216 ~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 216 EDM---VKEGAIVIDIGINR 232 (281)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 755 67999999999544
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=76.85 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=70.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC-CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG-KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~-~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
-|.||+|+|||||.=|.+=|.+|+-.|.+|++--|..... +.+... ...+.+.+|+.+.||+|.+.+|...+. .++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~d-Gf~V~~v~ea~k~ADvim~L~PDe~q~-~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKED-GFKVYTVEEAAKRADVVMILLPDEQQK-EVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhc-CCEeecHHHHhhcCCEEEEeCchhhHH-HHHH
Confidence 3899999999999999999999999999988876655332 222223 344679999999999999999975553 4555
Q ss_pred HHHHhccCCCcEE
Q 006758 238 AECLQHIKPGAFL 250 (632)
Q Consensus 238 ~~~L~~MK~GAvL 250 (632)
.+.-..||.|+.|
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 6777788888854
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00041 Score=71.68 Aligned_cols=96 Identities=14% Similarity=0.177 Sum_probs=64.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.++|||||+|+||.++++.|..-| -+|++++++.... +.....+..+++.+||+|++++|- ..+..++.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl~ 75 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVLL 75 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHHH
Confidence 357999999999999999998765 2599998865331 223345777888999999999884 44556654
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL 268 (632)
+....++++. +|.+.-|- ..+.+.+.+
T Consensus 76 -~i~~~l~~~~-iIS~~aGi--~~~~l~~~~ 102 (260)
T PTZ00431 76 -EIKPYLGSKL-LISICGGL--NLKTLEEMV 102 (260)
T ss_pred -HHHhhccCCE-EEEEeCCc--cHHHHHHHc
Confidence 3333455554 45554443 344444444
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00026 Score=76.29 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=62.1
Q ss_pred EEEEeCChhhHHHHHHHhh-CCCEEEEECCCCCCC----Cc--ccc--------------cCceecCCHHHHhccCCEEE
Q 006758 165 LGIVGRSASARALATRSLS-FKMSVLYFDVPEGKG----KV--TFP--------------SAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~Lka-fGm~V~~~dr~~~~~----~~--~~~--------------~g~~~~~sL~eLL~~ADVV~ 223 (632)
|||+|+|+||+.+++.+.. -+++|+++....... .. .++ .+.....++++++..+|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999764 478887765322110 00 000 01122346999999999999
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
.|.| .+.++.+++.+..|+++++|+-.
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECC
Confidence 8865 56788999999999999998864
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00043 Score=72.96 Aligned_cols=78 Identities=28% Similarity=0.431 Sum_probs=66.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|.++.... .+|.+.+++||+|+.+++- .++|+
T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~----p~~i~ 214 (282)
T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGV----PHFIG 214 (282)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 47999999999986 69999999999999999986432 3688999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 215 ~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 215 ADA---VKPGAVVIDVGISR 231 (282)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 764 67999999999654
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00043 Score=73.45 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=67.1
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|..+.... .+|.+.+++||+|+.+++- .++|.
T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGk----p~~i~ 216 (297)
T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGR----PNLIG 216 (297)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 48999999999986 69999999999999999986432 3788999999999999985 36788
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+. +|+|+++||+|--.+
T Consensus 217 ~~~---ik~gavVIDvGin~~ 234 (297)
T PRK14186 217 AEM---VKPGAVVVDVGIHRL 234 (297)
T ss_pred HHH---cCCCCEEEEeccccc
Confidence 755 679999999997654
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00079 Score=68.61 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=100.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCE---EEEECCCC----CCCC------cccc--cCceec-CCHHHHhccCCEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMS---VLYFDVPE----GKGK------VTFP--SAARRM-DTLNDLLAASDVI 222 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~---V~~~dr~~----~~~~------~~~~--~g~~~~-~sL~eLL~~ADVV 222 (632)
.+.++++.|+|.|.+|+.+|..|...|++ |+++||+. .... ..+. ...... .+|.+.+.++|+|
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE
Confidence 37899999999999999999999999984 99999983 2210 0010 000011 3687888999999
Q ss_pred EEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCC
Q 006758 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR 302 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPH 302 (632)
+.+.| .++++.+.++.|.++.+++..+. ...++-+.+|.+.|. . ...|...-- .....|+++=|-
T Consensus 102 IgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga-~-i~a~G~~~~------~~Q~nn~~~fPg 166 (226)
T cd05311 102 IGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGA-D-IVATGRSDF------PNQVNNVLGFPG 166 (226)
T ss_pred EeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCC-c-EEEeCCCCC------ccccceeeecch
Confidence 99987 37899999999999999998883 334444445544432 1 133432211 125678999997
Q ss_pred CCCccH-----HHHHHHHHHHHHHHHHHH
Q 006758 303 SADYSE-----EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 303 iAg~T~-----ea~~~~~~~a~~nL~~fL 326 (632)
++-... ..-++|...+++.|..+.
T Consensus 167 ~~~g~~~~~~~~i~~~m~~~aa~~la~~~ 195 (226)
T cd05311 167 IFRGALDVRATKITEEMKLAAAEAIADLA 195 (226)
T ss_pred hhHHHHHcCCcCCCHHHHHHHHHHHHhhC
Confidence 543221 123556666666666653
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0005 Score=72.46 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=66.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|.++.... .+|.+...+||+|+.+++- .++|+
T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGk----p~~i~ 215 (282)
T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNLLR 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 48999999999986 69999999999999999887543 3689999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. .|+|+++||+|--.
T Consensus 216 ~~~---vk~GavVIDvGin~ 232 (282)
T PRK14166 216 SDM---VKEGVIVVDVGINR 232 (282)
T ss_pred HHH---cCCCCEEEEecccc
Confidence 864 67999999999544
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00053 Score=72.17 Aligned_cols=78 Identities=21% Similarity=0.358 Sum_probs=66.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|..+.... .+|.+...+||+|+.+++- .++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGk----p~~i~ 216 (278)
T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGR----PKFID 216 (278)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 48999999999986 69999999999999999997532 3789999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 217 ~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 217 EEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred HHH---cCCCcEEEEeeccc
Confidence 765 67999999998544
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00027 Score=75.22 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=63.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCc---cc---ccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKV---TF---PSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-m~V~~~dr~~~~~~~---~~---~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
..++|+|||.|.+|+.+++.+.. ++ .+|.+|+|+...... .+ ...+....++++++.+||||+++.|.+
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 57889999999999999985553 55 589999998654321 11 011334578999999999998887754
Q ss_pred HhhccHHHHhccCCCcEEEEcCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgR 255 (632)
..+|.. +.++||+++.-++.
T Consensus 201 ~pvl~~---~~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRG---EWLKPGTHLDLVGN 220 (314)
T ss_pred CCEecH---HHcCCCCEEEeeCC
Confidence 466765 45789995554554
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00054 Score=73.91 Aligned_cols=78 Identities=14% Similarity=0.272 Sum_probs=66.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||-+. +|+.+|.+|..-|++|.++.... .+|.+..++||||+.+++- .++|.
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGk----p~~v~ 272 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGI----PNLVR 272 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 58999999999987 59999999999999999886542 3678999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 273 ~d~---vk~GavVIDVGin~ 289 (345)
T PLN02897 273 GSW---LKPGAVVIDVGTTP 289 (345)
T ss_pred HHH---cCCCCEEEEccccc
Confidence 755 67999999999654
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00063 Score=71.80 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=66.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|..++... .+|.+..++||+|+.+++- .++|.
T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk----~~~i~ 217 (284)
T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGK----PEFIK 217 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCC----cCccC
Confidence 48999999999986 69999999999999999997542 3688999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 218 ~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 218 ADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred HHH---cCCCCEEEEecCcc
Confidence 755 67999999999644
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00066 Score=72.11 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=66.6
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|+.+.... .+|.+.+++||+|+.++.- .++|.
T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T--------------~nl~~~~~~ADIvv~AvGk----~~~i~ 225 (299)
T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT--------------PDPESIVREADIVIAAAGQ----AMMIK 225 (299)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence 58999999999986 59999999999999999996542 3688999999999999975 37888
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 226 ~~~---vk~gavVIDvGin~ 242 (299)
T PLN02516 226 GDW---IKPGAAVIDVGTNA 242 (299)
T ss_pred HHH---cCCCCEEEEeeccc
Confidence 755 67999999999644
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00063 Score=73.80 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=66.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||-+. +|+.+|.+|...|++|..+.... .+|.+.+++||||+.+++- .++|.
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGk----p~~i~ 289 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQ----PNMVR 289 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCcCC
Confidence 68999999999986 59999999999999999986432 3788999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 290 ~d~---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 290 GSW---IKPGAVVIDVGINP 306 (364)
T ss_pred HHH---cCCCCEEEeccccc
Confidence 855 67999999999644
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0007 Score=71.58 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=67.3
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|..+.... .+|.+.+.+||+|+.+++- .++|+
T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGk----p~~i~ 213 (287)
T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGR----PHLIT 213 (287)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 58999999999976 69999999999999999887542 3688999999999999975 47888
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+. +|+|+++||+|--.+
T Consensus 214 ~~~---vk~GavVIDVGin~~ 231 (287)
T PRK14173 214 PEM---VRPGAVVVDVGINRV 231 (287)
T ss_pred HHH---cCCCCEEEEccCccc
Confidence 765 579999999997654
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0007 Score=71.41 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=66.1
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|..-|++|..+.... .+|.+.+++||+|+.+++- .++|.
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGk----p~~i~ 216 (282)
T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNFIT 216 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCC----cCcCC
Confidence 48999999999986 69999999999999999987542 3788899999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 217 ~~~---vk~gavVIDvGin~ 233 (282)
T PRK14180 217 ADM---VKEGAVVIDVGINH 233 (282)
T ss_pred HHH---cCCCcEEEEecccc
Confidence 754 67999999998533
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00058 Score=71.74 Aligned_cols=109 Identities=24% Similarity=0.351 Sum_probs=82.5
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|+|+++.|||.|+| |+.||..|...+++|.++.... .+|.+..++||+|+.++-. .++|.
T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~----p~~i~ 214 (283)
T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGK----PHFIK 214 (283)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCC----ccccc
Confidence 589999999999985 9999999999999999998654 3778899999999999875 47787
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC-CCCCCCCccccCCCcEEEcCCCCCccHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEE 309 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf-E~P~~~~~pL~~~pNVIiTPHiAg~T~e 309 (632)
+ ..+|+|+++|++|--.+-+ +++.| ||- +.- ..-.-.+||=-||.-.-
T Consensus 215 ~---d~vk~gavVIDVGinrv~~----------~kl~G---DVdf~~v--------~~~a~~iTPVPGGVGPm 263 (283)
T COG0190 215 A---DMVKPGAVVIDVGINRVND----------GKLVG---DVDFDSV--------KEKASAITPVPGGVGPM 263 (283)
T ss_pred c---ccccCCCEEEecCCccccC----------CceEe---eccHHHH--------HHhhcccCCCCCccCHH
Confidence 6 4478999999999755443 55543 653 211 11233588877776553
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00075 Score=71.30 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=65.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.|+++.|||.+. +|+.+|.+|..- +++|..+.... .+|.+.+++||+|+.+++- .
T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~----p 211 (287)
T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGV----P 211 (287)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----c
Confidence 48999999999986 699999999877 78999886532 3689999999999999985 3
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+. +|+|+++||+|--.
T Consensus 212 ~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 212 LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred CccCHHH---cCCCCEEEEecccc
Confidence 6788855 67999999999655
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00079 Score=71.36 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=66.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.+. +|+.+|.+|...|++|.++.... .+|.+.+.+||+|+.+++- .++|.
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGk----p~~i~ 218 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGI----PNFVK 218 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence 48999999999986 69999999999999999987643 3688999999999999985 46788
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|--.
T Consensus 219 ~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 219 YSW---IKKGAIVIDVGINS 235 (294)
T ss_pred HHH---cCCCCEEEEecccc
Confidence 765 56999999998654
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00041 Score=71.95 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=74.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccc-cCceecCCHHHH-hccCCEEEEccCCCh--hh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFP-SAARRMDTLNDL-LAASDVISLHCAVTD--ET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~-~g~~~~~sL~eL-L~~ADVV~l~lPlT~--~T 232 (632)
..+++++|+|.|.+|+.++..+...|++|.+++|+...... .+. .+.....++++. +..+|+|++++|..- ..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46889999999999999999999999999999987543221 000 011122344443 357999999999742 11
Q ss_pred Hh-hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 233 IQ-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 233 ~~-lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
.. .+. +..++++.+++++.-... +. .|++..++..+. .+|..
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~G~~--~vdG~ 237 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSLGTK--TIDGL 237 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCe--eeCCH
Confidence 11 122 345778888898876553 23 466666655443 55553
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00073 Score=71.71 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=65.4
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhh----CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLS----FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka----fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.|+++.|||.+. +|+.+|.+|.. .|++|..+.... .++.+.+++||+|+.+++..
T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~---- 217 (295)
T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKA---- 217 (295)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCcc----
Confidence 48999999999986 69999999886 588888877542 36899999999999999652
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+.+ |+|+++||+|-..
T Consensus 218 ~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CccCHHHc---CCCCEEEEeeccc
Confidence 78998776 8999999998654
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00089 Score=70.60 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=66.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||-+. +|+.+|.+|..-|++|..+.... .+|.+.+++||+|+.+++- .++|.
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~i~ 215 (282)
T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AELVK 215 (282)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence 47999999999986 69999999999999999986542 3688999999999999984 46888
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
.+. +|+|+++||+|--.+
T Consensus 216 ~~~---ik~gaiVIDvGin~~ 233 (282)
T PRK14182 216 GAW---VKEGAVVIDVGMNRL 233 (282)
T ss_pred HHH---cCCCCEEEEeeceec
Confidence 855 679999999996553
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.002 Score=72.62 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=73.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCc------c-ccc----------C--ceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKV------T-FPS----------A--ARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~~------~-~~~----------g--~~~~~sL~eLL~~ADV 221 (632)
++|+|||+|.+|..+|..|... |++|++||.+....+. . .+. + .....++.+.+..||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999855 6899999987532210 0 000 0 2223456778899999
Q ss_pred EEEccCCCh-----------hhHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 222 ISLHCAVTD-----------ETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 222 V~l~lPlT~-----------~T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+++|+|... +...+. -+..-..+++|.++|.-+.-.+=-.+.+...|.+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 999996322 222232 2346667899999998888665545566676665
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00083 Score=67.29 Aligned_cols=95 Identities=8% Similarity=0.166 Sum_probs=70.1
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC---CCCCCcc-c---ccC-------------------ce---
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP---EGKGKVT-F---PSA-------------------AR--- 207 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~---~~~~~~~-~---~~g-------------------~~--- 207 (632)
..|..++|+|||.|.+|..+|..|...|. +|.++|.. ....... + ..+ +.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 46899999999999999999999999999 79999987 2111100 0 000 00
Q ss_pred ---ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 208 ---RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 208 ---~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
..+++.+++..+|+|+.+ ..+.+++.++.......++...++...
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 012455678899999999 678889999888888888877777643
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00052 Score=74.94 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=79.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------------------cccccCceecCCHHHHhccCCEEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------------------VTFPSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------------------~~~~~g~~~~~sL~eLL~~ADVV~ 223 (632)
.+|||||+|-||-.+|..+...|++|++||.+....+ .....|.....+=-+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 7899999999999999999999999999998764322 011112122222223455999999
Q ss_pred EccCCCh------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcC--CcceEEeecC
Q 006758 224 LHCAVTD------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG--TLAGCALDGA 281 (632)
Q Consensus 224 l~lPlT~------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg--~I~GAaLDVf 281 (632)
+|+|..- +---+.+ +.....||+|.++|==|.-..=-.+.++.-|.+. .|. ..-|.+
T Consensus 90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~ 156 (436)
T COG0677 90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFY 156 (436)
T ss_pred EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceee
Confidence 9999421 1111222 3366789999999988887776677777766653 343 446664
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00038 Score=72.82 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=72.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|||||.|+||++|+.-|..-| -+|++.+|+..... .....+.....+..++..++|+|++++.- + .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKP--q----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKP--Q----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeCh--H----hH
Confidence 57999999999999999999888 58999999875442 11112233356778899999999999873 2 22
Q ss_pred HHHHhccC---CCcEEEEcCCChhhcHHHHHHHHH
Q 006758 238 AECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 238 ~~~L~~MK---~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
.+.+..++ ++.+||.++=|- ..+.|.+.|.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~ 108 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLG 108 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcC
Confidence 45666666 699999998774 4455666654
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00082 Score=71.03 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=65.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhh----CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLS----FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka----fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.||++.|||.+. +|+.+|.+|.. -|++|..+..+. .+|.+.+.+||+|+.+++. .
T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~----p 215 (286)
T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGR----P 215 (286)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCC----C
Confidence 47999999999987 59999999998 789999887542 3789999999999999964 5
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+.+ |+|+++||+|--.
T Consensus 216 ~li~~~~v---k~GavVIDVGi~~ 236 (286)
T PRK14184 216 RFVTADMV---KPGAVVVDVGINR 236 (286)
T ss_pred CcCCHHHc---CCCCEEEEeeeec
Confidence 67888766 8999999998543
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=70.10 Aligned_cols=109 Identities=22% Similarity=0.315 Sum_probs=80.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhh--CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLS--FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lka--fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
++.|+++.|||.+. +|+.+|.+|.. .|++|.++.... .+|.+.+++||+|+.+++- .++
T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T--------------~~l~~~~k~ADIvV~AvGk----p~~ 216 (284)
T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT--------------RDLAAHTRRADIIVAAAGV----AHL 216 (284)
T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC--------------CCHHHHHHhCCEEEEecCC----cCc
Confidence 58999999999976 69999999987 799999987542 3789999999999999985 367
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHH
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE 309 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~e 309 (632)
|..+. +|+|+++||+|.-.+ .+|++.| ||-+. ..+.. -.+||--+|.-.-
T Consensus 217 i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd~~-------v~~~a-~~iTPVPGGVGp~ 266 (284)
T PRK14193 217 VTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVHPD-------VWEVA-GAVSPNPGGVGPM 266 (284)
T ss_pred cCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecCHh-------HHhhC-CEEeCCCCChhHH
Confidence 88755 679999999997553 2455443 55421 01111 2589986776543
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00063 Score=72.80 Aligned_cols=91 Identities=14% Similarity=0.232 Sum_probs=67.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-C-CCEEEEECCCCCCCCc------ccccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-F-KMSVLYFDVPEGKGKV------TFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-f-Gm~V~~~dr~~~~~~~------~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.-+++||||.|.+|+..++.+.. + .-+|.+||++...... .+...+..+.+.++++++||||++|+|. +
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~ 203 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---R 203 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---C
Confidence 35789999999999997776653 3 3589999998754321 1111134467899999999999999885 3
Q ss_pred HhhccHHHHhccCCCcEEEEcCCCh
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
..+|..+ .+|||+.++.+|.-.
T Consensus 204 ~P~~~~~---~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 204 KPVVKAD---WVSEGTHINAIGADA 225 (325)
T ss_pred CcEecHH---HcCCCCEEEecCCCC
Confidence 4677664 469999999999643
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00041 Score=72.44 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=51.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCc---ccccCc-eec-CCHHHHhccCCEEEEccCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKV---TFPSAA-RRM-DTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~---~~~~g~-~~~-~sL~eLL~~ADVV~l~lPlT 229 (632)
.+.++++.|+|.|.+|+.++..|..+| .+|.+++|+....+. .+.... ... .++.+.+..+|+||+++|..
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 368899999999999999999999999 699999998643321 111000 011 13456778899999999974
|
|
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=97.24 E-value=2.8e-05 Score=83.73 Aligned_cols=204 Identities=17% Similarity=0.061 Sum_probs=155.0
Q ss_pred HHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccC-cEEEEEeCChhhHHHHHHHh--hC-CCEEEEECCCCCCCCc
Q 006758 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRG-LVLGIVGRSASARALATRSL--SF-KMSVLYFDVPEGKGKV 200 (632)
Q Consensus 125 liLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~G-ktVGIIGlG~IG~~vA~~Lk--af-Gm~V~~~dr~~~~~~~ 200 (632)
..+.+.+..+.........++|-....|+ +++ .|+++. .+..+++|-.+.. +. -|.+.+++-.....++
T Consensus 20 ~~~~lngp~h~~p~~aLld~rdc~vemPi------lk~~atvafc-daqstqeIhekvLneavgam~yh~i~l~reDlEk 92 (435)
T KOG0067|consen 20 RPLGLNGPLHPRPLVALLDGRDCGVEMPI------LKDLATVAFC-DAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEK 92 (435)
T ss_pred eecccCCCCCCCcchhhcccccccccchh------hhcchheeee-cccchHHHHHHHHHHhhhcceeeecccchhhHHH
Confidence 34444555544444445678887766665 222 244443 4567888877644 22 4678888766544442
Q ss_pred ccccC----ceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceE
Q 006758 201 TFPSA----ARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276 (632)
Q Consensus 201 ~~~~g----~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GA 276 (632)
..+.. +....++.++.+.+|+.|.+|-++..+...++...+.+.+ +.+..|+.-....++.+..+.+..+.+.++
T Consensus 93 fkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl-~l~rrntw~cq~l~eg~~~q~~~q~~e~a~ 171 (435)
T KOG0067|consen 93 FKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHIL-NLYRRNTWLCQALREGTCTQGLEQVREAAC 171 (435)
T ss_pred hhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHH-hhhcccchhhhhhcccceeechhhhhhhhh
Confidence 22222 2235688899999999999999999999999999999998 999999999999999999999999999999
Q ss_pred EeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 277 ALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 277 aLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
++|-.+.|.+...+ ..+|+.+.|-.|-+....+..+...+.+-+.++|..+.++. +.+..
T Consensus 172 g~~~~~G~~~g~~g--~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVyt--lqd~~ 231 (435)
T KOG0067|consen 172 GLARIRGPTLGLIG--FGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYT--LQDLL 231 (435)
T ss_pred ccccccccceeeec--cccccceehhhhhcccceeeeecchhhhhhhhhcccceecc--cchhh
Confidence 99999988876644 78999999999999999999999999999999997776554 44444
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00071 Score=72.68 Aligned_cols=92 Identities=10% Similarity=0.106 Sum_probs=64.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC---------Cccc------ccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG---------KVTF------PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~---------~~~~------~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|+|||.|.+|..+|..|...| .|..|.++.... .... +.......++.+.+..+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999988 577776653211 0001 1122334678888999999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
. ..++.++ ++.-..+++++.+|++.-|=
T Consensus 87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 S-HGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 3 4455554 23445578888899888763
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00074 Score=71.64 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=67.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc---ccc-cCc-eecCCHHHHhccCCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV---TFP-SAA-RRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~---~~~-~g~-~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
...++|+|||.|.+|+..++.+.. ++. +|.+|+|+...... .+. .+. ..+.++++++.++|+|+++.|.+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~--- 199 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR--- 199 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence 356889999999999999999864 665 79999998643321 110 011 11468999999999999999864
Q ss_pred HhhccHHHHhccCCCcEEEEcCCCh
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
..+|.. .+|||+.++.+|.-.
T Consensus 200 ~Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 200 TPVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred CceeCc----cCCCCCEEEecCCCC
Confidence 366764 379999999999643
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=69.51 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=65.0
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.||++.|||.+. +|+.+|.+|..- +++|.++.... .+|.+.+.+||+|+.+++- .
T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGk----p 215 (293)
T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQ----P 215 (293)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCC----c
Confidence 48999999999986 599999999865 79999886442 3788999999999999985 4
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+. +|+|+++||+|--.
T Consensus 216 ~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 216 EFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CccCHHH---cCCCCEEEEecCcc
Confidence 6788744 67999999999644
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0017 Score=70.78 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=68.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC-------CEEEEECCCCCC---------------CC----cccccCceecCCHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK-------MSVLYFDVPEGK---------------GK----VTFPSAARRMDTLN 213 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-------m~V~~~dr~~~~---------------~~----~~~~~g~~~~~sL~ 213 (632)
+.-++|+|||.|..|.++|..|...| .+|..|.++... .. ..++..+....++.
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 44568999999999999999998665 789998776531 00 11233444457889
Q ss_pred HHhccCCEEEEccCCChhhHhhccHHHHh--ccCCCcEEEEcCCChhh
Q 006758 214 DLLAASDVISLHCAVTDETIQIINAECLQ--HIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 214 eLL~~ADVV~l~lPlT~~T~~lI~~~~L~--~MK~GAvLINvgRG~iV 259 (632)
+++..||+|++++|- ...+.++ .+.-. .+++++++|+++=|=-.
T Consensus 89 eav~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 89 EAVEDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred HHHhcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCccc
Confidence 999999999999995 2334443 22222 46678899998776433
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=70.43 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=75.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC----------CC----CcccccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG----------KG----KVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~----------~~----~~~~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||.|.-|.++|..|...|.+|..|.+.+. .. ...++.......+|.+++..||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 5799999999999999999999999999987521 11 123344455667899999999999999995
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
...+.++. ..-..+++++.+|+++-|=-.+.-.+...+-
T Consensus 82 -~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~t~~l~seii 120 (329)
T COG0240 82 -QALREVLR-QLKPLLLKDAIIVSATKGLEPETGRLLSEII 120 (329)
T ss_pred -HHHHHHHH-HHhhhccCCCeEEEEeccccCCCcchHHHHH
Confidence 33333332 2224668999999999876555444443333
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=68.72 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=63.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC---------C-----cccccCceecCCHHHHh-ccCCEEEEccCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG---------K-----VTFPSAARRMDTLNDLL-AASDVISLHCAV 228 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~---------~-----~~~~~g~~~~~sL~eLL-~~ADVV~l~lPl 228 (632)
+|+|||.|.||..+|..|...|.+|.+|+|+.... . ..++.......++.+.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 69999999999999999999999999999864211 0 00111223345677766 589999999995
Q ss_pred ChhhHhhccHHHHh-ccCCCcEEEEcCCCh
Q 006758 229 TDETIQIINAECLQ-HIKPGAFLVNTGSSQ 257 (632)
Q Consensus 229 T~~T~~lI~~~~L~-~MK~GAvLINvgRG~ 257 (632)
..+..++. .... .+++++.+|.+.-|=
T Consensus 82 -~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 -QQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 33444442 2333 567777777776664
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.002 Score=69.72 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=66.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCC--------CEEEEECCCC-----C----------CCC----cccccCceecCCHHHHh
Q 006758 164 VLGIVGRSASARALATRSLSFK--------MSVLYFDVPE-----G----------KGK----VTFPSAARRMDTLNDLL 216 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafG--------m~V~~~dr~~-----~----------~~~----~~~~~g~~~~~sL~eLL 216 (632)
+|+|||.|+.|.++|..|...| .+|..|.+.. . ... ..++.......++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999998767 8999998721 0 000 01122334456899999
Q ss_pred ccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 217 ~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
..||+|++++|. ...+.++ ...-..++++..+|+++-|=-
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcc
Confidence 999999999995 3333333 334456788999999987743
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0035 Score=73.92 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=83.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccc-------------cCceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFP-------------SAARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~-------------~g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..||..+...|++|+.||++....+. ... .......++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 57999999999999999999999999999998643210 000 012223456 44799
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
||+|+=++|-.-+.+.-+-++.-..++++++|....++ +....|.+++.. .-..+++--|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCC
Confidence 99999999999998888888888889999998765553 445566666642 33335555554
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0019 Score=68.56 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=64.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+.|+++.|||.+. +|+.+|.+|..- +++|..+.... .+|.+..++||+|+.++.- .
T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGk----p 215 (297)
T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGV----P 215 (297)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----c
Confidence 48999999999986 699999999865 89999875432 3688999999999999875 3
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+. +|+|+++||+|--.
T Consensus 216 ~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 216 ELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CccCHHH---cCCCCEEEEccccc
Confidence 5888754 67999999999654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00065 Score=66.73 Aligned_cols=96 Identities=11% Similarity=0.031 Sum_probs=58.4
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---c----ccCc-----eecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT---F----PSAA-----RRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~---~----~~g~-----~~~~sL~eLL~~ADVV~l~ 225 (632)
.++++++.|+|. |.+|+.+++.|...|.+|.+++|+....... + .... ...+++.+.+.++|+|+.+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 368999999995 9999999999999999999999875322100 0 0000 1112334667778888887
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
.|....+ .+. .-...+++.+++|+.+...
T Consensus 105 t~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 105 GAAGVEL--LEK--LAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred CCCCcee--chh--hhcccCceeEEEEccCCCC
Confidence 7754321 111 1112334556666555443
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0023 Score=68.07 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=64.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhC----CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSF----KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.|++|.|||.+. +|+.+|.+|..- +++|..+.... .+|.+.+++||+|+.++.- .
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGk----p 219 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGV----P 219 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCC----c
Confidence 58999999999986 699999999876 78999875432 3688999999999999874 4
Q ss_pred hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++|..+. +|+|+++||+|--.
T Consensus 220 ~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 220 NLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred CccCHHH---cCCCCEEEecCCCc
Confidence 6788755 67999999999655
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0014 Score=69.97 Aligned_cols=89 Identities=15% Similarity=0.243 Sum_probs=66.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCc-------ccccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afGm-~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..++++|||.|.+|+..+..+. ..++ +|.+|+|+...... .+......+.++++++.++|+|+++.|.+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4678999999999999887765 4565 79999998654321 01112234678999999999999999964
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+|. ..+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 34554 456999999999874
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.001 Score=70.83 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=58.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCC------cccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
-+++||||.|..|..-++.+.. ++. +|.+|+|+....+ ..+...+..++++++++++||||+++.|.+..+
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~- 206 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA- 206 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence 3589999999999999988764 666 8999999864332 112223445789999999999999998865533
Q ss_pred hhccHHHHhccCCCcEEEEcCCChh
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
-+|..+ .++||+.++.+|....
T Consensus 207 P~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 207 PVFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp ESB-GG---GS-TT-EEEE-S-SST
T ss_pred ccccHH---HcCCCcEEEEecCCCC
Confidence 677764 6789999999997644
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0065 Score=64.27 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=72.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--cc--c--ccC------ceecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--VT--F--PSA------ARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~--~~--~--~~g------~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||.|.||..+|..|...|.+|.++.+...... .. . ..+ .....+++ .+..+|+|+++++...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEEecCCC
Confidence 5799999999999999999999999999998652110 00 0 001 00112233 4678999999999643
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEE
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAa 277 (632)
+...+ ......+++++++|...-| +-.++.|.+.+-..++.++.
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 33333 2334446788888888776 34566677777666665543
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0037 Score=68.39 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=92.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cCceecCCHHHH---hccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDL---LAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eL---L~~ADVV~l~lPlT~~T~~ 234 (632)
..||+||+|.||+.+|.+....|++|.+|+|+....+..+. .......+++|+ |+.---|++++-...-...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999999755441111 122334566665 6667788888766432234
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
.| ++.+..|-+|-++|+-|...--|...-.++|.+..|...+.=|-
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVS 129 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVS 129 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccc
Confidence 44 57888999999999999999999999999999999888887775
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=68.60 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=66.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCcc-------cccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afGm-~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..++++|||.|.+|+..++.+. .++. +|.+|+|+....... +...+..++++++.+.+||+|+++.|.+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 4578999999999999999887 4775 799999986543210 1111233578999999999999998863
Q ss_pred hHhhccHHHHhccCCCcEEEEcCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
..+|..+. +|+|+.++.++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 36776644 689998887774
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0073 Score=71.18 Aligned_cols=116 Identities=14% Similarity=0.010 Sum_probs=83.8
Q ss_pred cEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcc------------------------cccCceecCCHHHHhc
Q 006758 163 LVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVT------------------------FPSAARRMDTLNDLLA 217 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~------------------------~~~g~~~~~sL~eLL~ 217 (632)
++|+|||.|.||..||..+. ..|++|..||++....... .........++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 67999999999999999988 7899999999875321100 00012223455 4579
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
+||+|+=++|-+.+.+.-+-++.=+.++|+++|....++ +....|.+.+.. .-..+++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence 999999999999998888888887889999999866554 455666666642 23345666664
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0053 Score=65.65 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=72.3
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCC---------cc-cc--cCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGK---------VT-FP--SAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~---------~~-~~--~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+..++|+|||.|.||..+|..+...| .+|..||.+..... .. .. .......+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988777 69999998763221 00 00 0111224556 779999999999
Q ss_pred --CCChh-h--------Hhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHHHH--cCCcceEE--ee
Q 006758 227 --AVTDE-T--------IQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI--DGTLAGCA--LD 279 (632)
Q Consensus 227 --PlT~~-T--------~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~--sg~I~GAa--LD 279 (632)
|-.+. + -.++- .+.+....|.+++||++--.-+-...+.+.-. ..++.|.+ ||
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 44331 1 11111 23444556889999986533233333433321 24455444 66
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0087 Score=63.99 Aligned_cols=119 Identities=16% Similarity=0.053 Sum_probs=82.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----------cccccC-------------ceecCCHHHHhc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----------VTFPSA-------------ARRMDTLNDLLA 217 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-----------~~~~~g-------------~~~~~sL~eLL~ 217 (632)
-++|||||.|.||..+|..+..-|+.|..+|++..... .....+ .....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47899999999999999999887799999999843211 000000 11122333 688
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP 284 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P 284 (632)
+||+|+=++|-+-+.++-+-++.=...+|+++|=...++ +...+|.+++ ...=..+++=-|.+|
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~-~rper~iG~HFfNP~ 145 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEAL-KRPERFIGLHFFNPV 145 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHh-CCchhEEEEeccCCC
Confidence 999999999999988887777777888999998643332 4456777777 334344566555543
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0013 Score=69.23 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=51.6
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccc-------cc-CceecCCHHHHhccCCEEEEccCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTF-------PS-AARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~-------~~-g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
+.+++|.|||.|.+|++++..|...|+ +|.++||+....+... .. ......++.+.+..+|+||++.|.
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 578999999999999999999999998 8999999864332110 00 111234556677889999999986
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0021 Score=68.75 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=64.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc---cc----ccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV---TF----PSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~---~~----~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
-++|||||.|.+|+..++.+.. .++ .|.+||++...... .+ ...+..+.++++++. +|+|++|.|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4689999999999999998874 455 68889998643321 11 111334678999997 99999999864
Q ss_pred HhhccHHHHhccCCCcEEEEcCCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+|..+. +|+|+.+..+|.-
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGAD 225 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCC
Confidence 46777654 5899999999853
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0071 Score=71.63 Aligned_cols=117 Identities=9% Similarity=-0.008 Sum_probs=84.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------c-----c--------ccCceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-----------T-----F--------PSAARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~-----~--------~~g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..||..+...|++|+.+|++....+. . . ........+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999999999999988643220 0 0 00122234554 5799
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
||+|+=++|-.-+.+.-+-++.=..++++++|....+ -++...|.+++.. .-..+++--|.+
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~-p~r~ig~Hff~P 476 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSR-PEKVIGMHYFSP 476 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCC-ccceEEEeccCC
Confidence 9999999999999888888888888999998874433 2455667666643 333456666653
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0011 Score=59.20 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=57.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.|+|++|.|||.|.+|..-++.|...|++|+++++.....+.... .....+++.+..+|+|+++.+... +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~---~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQ---LIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCE---EEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHH---HHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 589999999999999999999999999999999988410010111 112344566888999998876422 344
Q ss_pred HHHhccCCCcEEEEcC
Q 006758 239 ECLQHIKPGAFLVNTG 254 (632)
Q Consensus 239 ~~L~~MK~GAvLINvg 254 (632)
......+.--++||+.
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 4555555555778874
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=69.67 Aligned_cols=117 Identities=10% Similarity=-0.023 Sum_probs=82.5
Q ss_pred cEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcc-----------c-------------ccCceecCCHHHHhc
Q 006758 163 LVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVT-----------F-------------PSAARRMDTLNDLLA 217 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~-----------~-------------~~g~~~~~sL~eLL~ 217 (632)
++|+|||.|.||..+|..+. ..|++|+.||++....... . ........++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999887 4899999999886421100 0 0012233455 4678
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
+||+|+=++|-.-+.+.-+-++.=..++++++|....++ +....|.+++.. .-..+++--|.+
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP 446 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSP 446 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCc
Confidence 999999999999998888878888888999988765543 444566666642 233356665543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0034 Score=67.85 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=54.4
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceecCCHH----HHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLN----DLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~~sL~----eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+.|++|.|||.|.||..+|+.|...|+ +|++.+|+.... .+ ..+. +++..+||||.+..-|....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~--~~-------~~~~~~~~~~~~~~DvVIs~t~~Tas~~ 241 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL--PY-------RTVVREELSFQDPYDVIFFGSSESAYAF 241 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc--ch-------hhhhhhhhhcccCCCEEEEcCCcCCCCC
Confidence 5899999999999999999999999996 699999987421 11 2222 45678999998743333333
Q ss_pred hhccHHHHhc
Q 006758 234 QIINAECLQH 243 (632)
Q Consensus 234 ~lI~~~~L~~ 243 (632)
.++..+.+..
T Consensus 242 p~i~~~~~~~ 251 (338)
T PRK00676 242 PHLSWESLAD 251 (338)
T ss_pred ceeeHHHHhh
Confidence 4555555443
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0048 Score=65.63 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=71.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-ccc-----------ccCceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-VTF-----------PSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-~~~-----------~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.+|..+|..+...|. +|+.+|....... ... ........++++ +++||+|+++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 479999999999999999988775 8999998543211 000 001122356766 78999999999842
Q ss_pred h-----------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHH--HHcCCcceEE--ee
Q 006758 230 D-----------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL--LIDGTLAGCA--LD 279 (632)
Q Consensus 230 ~-----------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~A--L~sg~I~GAa--LD 279 (632)
. .+..++- .+.+....+++++|+++.--=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 2 1222221 123444457899999977433333334444 3344455554 77
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0014 Score=72.37 Aligned_cols=94 Identities=13% Similarity=0.156 Sum_probs=65.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.|+++++.|||+|.||.-+|+.|...|. +|++.+|+..... ..+...+..++.+.+.+..+||||.+... ...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa---~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA---PHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC---Ccc
Confidence 4899999999999999999999999995 8999999875433 12222234456778889999999998543 334
Q ss_pred hccHHHHhccC---CCcEEEEcCC
Q 006758 235 IINAECLQHIK---PGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~MK---~GAvLINvgR 255 (632)
+|..+.+...- +.-++|+++=
T Consensus 252 ii~~~~ve~a~~~r~~~livDiav 275 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAV 275 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecC
Confidence 55544433221 1135555543
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0017 Score=71.94 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=58.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---ccc-cCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFP-SAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+.|++|.|||.|.||+.+|+.|...|+ +|++++|+...... .+. .....++++.+++..+|+||+|.+.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 5789999999999999999999999996 79999998643321 111 11223456778899999999998752 3
Q ss_pred hhccHHH
Q 006758 234 QIINAEC 240 (632)
Q Consensus 234 ~lI~~~~ 240 (632)
.+|..+.
T Consensus 255 ~vi~~~~ 261 (414)
T PRK13940 255 YIVTCKY 261 (414)
T ss_pred eeECHHH
Confidence 4555443
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0043 Score=62.28 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=47.9
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 164 VLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
+|+|||- |.+|+-++..++..|+.|. +.+||+|++|+|.. .+..++ .
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~~~i-----~ 49 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AALNYI-----E 49 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHHHHH-----H
Confidence 7899998 9999999999999999985 35899999999963 333333 3
Q ss_pred ccCCCcEEEEcCCChh
Q 006758 243 HIKPGAFLVNTGSSQL 258 (632)
Q Consensus 243 ~MK~GAvLINvgRG~i 258 (632)
.+. .+|+++++-+-
T Consensus 50 ~~~--~~v~Dv~SvK~ 63 (197)
T PRK06444 50 SYD--NNFVEISSVKW 63 (197)
T ss_pred HhC--CeEEeccccCH
Confidence 333 37999998554
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0067 Score=62.02 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=70.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC----CC---C------------cccccCceecCCHHHH-hc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG----KG---K------------VTFPSAARRMDTLNDL-LA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~~----~~---~------------~~~~~g~~~~~sL~eL-L~ 217 (632)
+++|++|.|.|+|++|+.+|+.|..+|++|+++ |.... .+ . ..++ ....+ +.+++ -.
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~-~~~~~-~~~~i~~~ 105 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFP-GAERI-TNEELLEL 105 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCC-Cceec-CCccceee
Confidence 479999999999999999999999999999955 43210 00 0 0000 01111 22222 23
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+|||++-|.+ .+.|+.+...+++ -.+++-.+-+.+- ....+.|.++.|.
T Consensus 106 ~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~ 154 (227)
T cd01076 106 DCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL 154 (227)
T ss_pred cccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence 6889877765 3678888888886 5677777777774 4455777777665
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.011 Score=61.51 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=93.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECC-CC----CC-----------------CC--ccccc---CceecCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV-PE----GK-----------------GK--VTFPS---AARRMDT 211 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr-~~----~~-----------------~~--~~~~~---g~~~~~s 211 (632)
++.|++|.|.|+|++|+.+|+.|..+|++|+++.. +. .. .. ..+.. +.... +
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~ 113 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-E 113 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-C
Confidence 47999999999999999999999999999995532 11 00 00 00110 12222 3
Q ss_pred HHHH-hccCCEEEEccCCChhhHhhccHHHHhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCC
Q 006758 212 LNDL-LAASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQW 286 (632)
Q Consensus 212 L~eL-L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK--~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~ 286 (632)
.+++ -..|||++-| .+.+.|+++....++ +-.+++-.+-+++-+ +-.+.|.++.|. .+=|+.-+ -.-
T Consensus 114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGVi 185 (254)
T cd05313 114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGVA 185 (254)
T ss_pred CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCee
Confidence 3343 3469999777 457889999888885 456888888888865 344677777665 34454332 000
Q ss_pred CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHH
Q 006758 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 287 ~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL 326 (632)
. +.+--..| .-|..|.-++...++...+.+...+.+
T Consensus 186 v-s~~E~~qn---~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254)
T cd05313 186 V-SGLEMSQN---SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254)
T ss_pred e-eHHHhhcc---cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000111 223445556676666666666655544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=69.45 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=82.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------c-------------ccCceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------F-------------PSAARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~-------------~~g~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..||..+...|++|+.+|++....+.. . ........++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 579999999999999999999999999999886432100 0 0011223455 44799
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
||+|+=++|-.-+.+.=+-++.=..++|+++|-...++ ++..+|..++.. .-..+++=-|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~ 453 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFN 453 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence 99999999998888887878888889999998765553 445566666642 22334444443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0043 Score=66.90 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=69.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCC-------cccccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGK-------VTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~-------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
-+++||||.|..+..-++.++. |+. +|.+|+|++...+ ..+...+....++++++..||+|+.+.|.+.
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4679999999999999998874 566 8999999875443 1111124567899999999999999999765
Q ss_pred HhhccHHHHhccCCCcEEEEcCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+|..+. +|||+.|..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 7787755 569999999995
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0074 Score=55.39 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=68.7
Q ss_pred cEEEEEe----CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVG----RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIG----lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
|+|+||| -+..|..+.+.|+..|++|+.+++..... .|...+.+|.|.-...|++++++|- +.+..++.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~- 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD- 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH-
Confidence 5799999 78999999999999999999999887332 3566678999854789999999995 33445543
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.+..+..+.+++..+ ..++++.+.+++..+.
T Consensus 74 -~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 74 -EAAALGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred -HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 334456778999988 6677788888877665
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0037 Score=56.84 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=55.1
Q ss_pred EEEEEe-CChhhHHHHHHHhhC-CCEEEEE-CCCCCCCCcccccC--c--eecCCH--HHH-hccCCEEEEccCCChhhH
Q 006758 164 VLGIVG-RSASARALATRSLSF-KMSVLYF-DVPEGKGKVTFPSA--A--RRMDTL--NDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~-dr~~~~~~~~~~~g--~--~~~~sL--~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
++||+| .|.+|..++..+... +++|.++ ++............ . .....+ +++ ..++|+|++|+|.....
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~- 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSK- 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHH-
Confidence 489999 599999999998875 7877777 43322221110000 1 000111 111 25899999999975433
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
.++. ..+..+++|.++|+++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3222 23456789999999985
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0027 Score=68.72 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=70.2
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhh-CCC-EEEEECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLS-FKM-SVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.|++|.|+|. |.||+.+++.|.. .|. +|+.++|+........ ........++++.+.++|+|+.+.-.. ..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---~~ 228 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---KG 228 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---cC
Confidence 479999999998 8999999999974 564 8999998754322100 111122346889999999998765432 24
Q ss_pred -hccHHHHhccCCCcEEEEcCCChhhcH
Q 006758 235 -IINAECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 235 -lI~~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
+|+.+. |+++.++|++|+-.=||.
T Consensus 229 ~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 229 VEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 477764 479999999999877765
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0029 Score=69.54 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=48.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcc----------cccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVT----------FPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~----------~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|.|||.|.||+.+|..|...| .+|++.||+....... ....+.....|.+++++.|+|+.++|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 57899999999999999999998 8999999995433211 111122334567788888888888874
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.038 Score=56.22 Aligned_cols=108 Identities=15% Similarity=0.147 Sum_probs=70.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCC----------CCCCccccc-Ccee-----cCCHHHHh-ccCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPE----------GKGKVTFPS-AARR-----MDTLNDLL-AASD 220 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~----------~~~~~~~~~-g~~~-----~~sL~eLL-~~AD 220 (632)
+|.|++|.|.|+|++|+.+|+.|...|++|+++ |.+. ......... +... ..+-++++ ..||
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence 478999999999999999999999999966654 5543 100000000 0000 01112332 3689
Q ss_pred EEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 221 VV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
|++-|.+- ++|+.+....++ -.+++--+.+++-+ .-.+.|.+..+.
T Consensus 100 VlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 100 IFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred EEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 99888764 588888888887 66778888888765 334556655543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0057 Score=63.19 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=74.8
Q ss_pred EEEEeC-ChhhHHHHHHHhhCC----CEEEEECCCCCCCC----------ccc-ccCceecCCHHHHhccCCEEEEccCC
Q 006758 165 LGIVGR-SASARALATRSLSFK----MSVLYFDVPEGKGK----------VTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafG----m~V~~~dr~~~~~~----------~~~-~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
|+|||. |.+|..+|..+...| .+|..||......+ ... .......+++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988777 69999998764332 001 11222345678999999999996522
Q ss_pred Ch-----------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH--HHHH--HHcCCcceEE-eecC
Q 006758 229 TD-----------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA--VKQL--LIDGTLAGCA-LDGA 281 (632)
Q Consensus 229 T~-----------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A--L~~A--L~sg~I~GAa-LDVf 281 (632)
.. .+..++- .+.+....|.+++||++ ..+|.-+ +.+. +...++.|.+ ||..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 11 1222221 23444556899999996 4454443 4444 3456788888 8863
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0048 Score=65.99 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=67.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc------ccccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV------TFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~------~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.-++++|||.|..|+.-++.+.. +.. +|.+|+|+....+. .....+..+++.++++..||||+++.|. +
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~ 203 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---R 203 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---C
Confidence 35789999999999999887764 344 89999999754321 0011233357899999999999999774 4
Q ss_pred HhhccHHHHhccCCCcEEEEcCCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+|..+ .+|||+.++.+|.-
T Consensus 204 ~P~~~~~---~l~~G~hi~~iGs~ 224 (315)
T PRK06823 204 EPLLQAE---DIQPGTHITAVGAD 224 (315)
T ss_pred CceeCHH---HcCCCcEEEecCCC
Confidence 5778765 46899999999853
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0018 Score=72.81 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=50.5
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHH--hccCCEEEEccCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL--LAASDVISLHCAVT 229 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eL--L~~ADVV~l~lPlT 229 (632)
..+.+++++|+|.|.+|++++..+...|++|.+++++....+...........+++++ +..+|+|++|+|..
T Consensus 328 ~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 3568999999999999999999999999999999987533221100000011122322 56899999999974
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.025 Score=63.33 Aligned_cols=160 Identities=14% Similarity=0.050 Sum_probs=100.4
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEE--------ECCCCCCCCc--------------------ccccCceecC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLY--------FDVPEGKGKV--------------------TFPSAARRMD 210 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~--------~dr~~~~~~~--------------------~~~~g~~~~~ 210 (632)
+|.|+||.|=|+|++|..+|+.|..+|++|++ ||+..-.... .++ ++..+
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~~i- 302 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GSTFF- 302 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCEEc-
Confidence 58999999999999999999999999999999 7755322110 111 22222
Q ss_pred CHHHHh-ccCCEEEEccCCChhhHhhccHHHHhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCC-CC
Q 006758 211 TLNDLL-AASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP-QW 286 (632)
Q Consensus 211 sL~eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~~MK--~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P-~~ 286 (632)
+-++++ ..|||++-|. +.+.|+.+....+. .-.+++--+.+ ++..+|- +.|.+..|. .+=|..-+- --
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGGV 374 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGGV 374 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCCe
Confidence 334443 3589996663 67889988888882 35577888888 4545443 667777665 344544320 00
Q ss_pred CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC
Q 006758 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (632)
Q Consensus 287 ~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~ 331 (632)
.-+.+ .-+-=.-|..|..++...++.+.+.+.+.+.+..++.
T Consensus 375 ivs~~---E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~~~~~~ 416 (445)
T PRK14030 375 ATSGL---EMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCVKYGKE 416 (445)
T ss_pred eeehh---hhhccccccCcCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 00000 0111124566777778788877777777776655543
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0078 Score=63.09 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=64.7
Q ss_pred cEEEEEeCChhhHHHHHHHhh---CCCEEEE-ECCCCCCCCcccccCceecCCHHHH-hccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLS---FKMSVLY-FDVPEGKGKVTFPSAARRMDTLNDL-LAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka---fGm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eL-L~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+|||||+|.||+.+++.+.. .++++.+ |++...... .+......+.+++++ ....|+|+=|..- + .+-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~DlVVE~A~~--~---av~ 76 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPP-ALAGRVALLDGLPGLLAWRPDLVVEAAGQ--Q---AIA 76 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHH-HhhccCcccCCHHHHhhcCCCEEEECCCH--H---HHH
Confidence 589999999999999999874 2365544 455432211 222224456789997 5789999999774 2 222
Q ss_pred HHHHhccCCCcEEEEcCCChhhc---HHHHHHHHHc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLD---DCAVKQLLID 270 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVD---e~AL~~AL~s 270 (632)
+--..-|+.|.-+|=.+=|.+.| .+.|.++.+.
T Consensus 77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence 22233345676777777788776 3445555444
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0051 Score=67.48 Aligned_cols=93 Identities=17% Similarity=0.365 Sum_probs=68.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CC-C-EEEEECCCCCCCC-------ccccc--CceecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVGRSASARALATRSLS-FK-M-SVLYFDVPEGKGK-------VTFPS--AARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fG-m-~V~~~dr~~~~~~-------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
-+++||||.|..|+.-++.+.. +. . +|.+|+|+..... ..+.. .+..+.++++++.+||||+++.+.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4689999999999999988776 42 4 8999999874332 11111 1334688999999999999998754
Q ss_pred h---hhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 230 D---ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 230 ~---~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
. .+..+|..+ .+|||+.++.+|.-+
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCccc
Confidence 3 345778765 467999888877644
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0057 Score=65.81 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=60.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.+|||||+|+||+.+++.+... ++++.+ ++++..... ....+.....+.++++.+.|+|++|.|.... + ...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~-~~~~~v~~~~d~~e~l~~iDVViIctPs~th---~--~~~ 77 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETL-DTETPVYAVADDEKHLDDVDVLILCMGSATD---I--PEQ 77 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHH-hhcCCccccCCHHHhccCCCEEEEcCCCccC---H--HHH
Confidence 5899999999999999999866 898876 587742111 1112333445778888999999999986433 1 334
Q ss_pred HhccCCCcEEEEcC
Q 006758 241 LQHIKPGAFLVNTG 254 (632)
Q Consensus 241 L~~MK~GAvLINvg 254 (632)
...|+.|.-+|+..
T Consensus 78 ~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 78 APYFAQFANTVDSF 91 (324)
T ss_pred HHHHHcCCCEEECC
Confidence 45566777777774
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0066 Score=65.08 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=63.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCcc-------cccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVT-------FPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-m~V~~~dr~~~~~~~~-------~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..++++|||.|.+|+..+..+.. .+ -+|.+|+|+....+.. +...+..+.++++++.+||+|+++.|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 45789999999999998888874 55 4899999986433210 1111233578999999999999998864
Q ss_pred hHhhccHHHHhccCCCcEEEEcC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..+|..+. +++|+.++-++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 35676644 57888776654
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.028 Score=62.47 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=75.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC----CCC---------------cccccCceecCCHHH-Hhc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG----KGK---------------VTFPSAARRMDTLND-LLA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~~----~~~---------------~~~~~g~~~~~sL~e-LL~ 217 (632)
+++|++|.|.|+|++|+.+|+.|...|++|+++ |.+.. .+. ..++ +...+ +.++ +..
T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~-~a~~i-~~~e~l~~ 280 (410)
T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFP-GGDPI-DPDDILVE 280 (410)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccc-cceEe-cCccceec
Confidence 589999999999999999999999999999954 54310 000 0011 11112 2233 344
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.|||++-|. ..+.|+++....++ -.+++-.+.+.+ ..+-.+.|.+..|. .+=|+
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~--t~ea~~~L~~rGI~-~~PD~ 334 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT--DPEADEILRKKGVV-VLPDI 334 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC--CHHHHHHHHHCCcE-EEChH
Confidence 799997664 45789998888885 668899999998 33344777877765 33444
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0058 Score=61.51 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=56.2
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccC-cee--cCCHHHHhccCCEEEEccCCChhhH
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSA-ARR--MDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g-~~~--~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
-+|.|++|.|||.|.+|..-++.|..+|++|.++++........+ ..+ +.. -.--.+.+..+|+|+.+....+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 468999999999999999999999999999999998754221011 000 110 0001344567777766644321
Q ss_pred hhccHHHHhccCCCcEEEEc
Q 006758 234 QIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINv 253 (632)
+|.......+.-.++||+
T Consensus 82 --ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNV 99 (205)
T ss_pred --HHHHHHHHHHHcCCEEEE
Confidence 233344444444566664
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.019 Score=59.49 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=47.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcccccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+|+|+|+ |.||+.+++.+... ++++.+ +|+...........++..+.++++++..+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998864 788665 6766533221111233346789999989999998875
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.016 Score=61.96 Aligned_cols=108 Identities=10% Similarity=-0.022 Sum_probs=74.2
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCC------------------cccc-------------cCceecCC--HHHHhccC
Q 006758 173 SARALATRSLSFKMSVLYFDVPEGKGK------------------VTFP-------------SAARRMDT--LNDLLAAS 219 (632)
Q Consensus 173 IG~~vA~~LkafGm~V~~~dr~~~~~~------------------~~~~-------------~g~~~~~s--L~eLL~~A 219 (632)
||..||..+...|++|+.||++....+ .... .......+ +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 689999999999999999999874210 0000 01111222 56788999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
|+|+-++|-..+.+.-+-.+..+.++++++|..+.+ .+....|.+.+.. .=...++-.|.+
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS--~~~~~~la~~~~~-p~r~~g~Hf~~P 141 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTS--TFLVTDLQRHVAH-PERFLNAHWLNP 141 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccc--cCCHHHHHhhcCC-cccEEEEecCCc
Confidence 999999999999998888888889999999955444 4556667766642 222344444443
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0085 Score=59.91 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=35.5
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|.+++|.|||+|.+|..+|+.|...|+ ++.++|+..
T Consensus 16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 356899999999999999999999999998 899999873
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=62.10 Aligned_cols=95 Identities=12% Similarity=0.168 Sum_probs=61.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+++|+|||.|.+|..+|..+...|. ++..+|.+..... ..+.....-..+-.+.+++||+|+++.-..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 57899999999999999999998887 8999998754322 001011111122345689999999976542
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
.. +..++. ...+....|.+++|+++-
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 122221 123333447899999973
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0081 Score=64.89 Aligned_cols=39 Identities=23% Similarity=0.114 Sum_probs=35.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|++++|.|||.|.+|..+|..|...|. ++.++|+..
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467999999999999999999999999998 899999874
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.011 Score=62.91 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=66.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc---c----cccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV---T----FPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~---~----~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
-+++||||.|..|..-++.+.. +.. +|.+|+|+..+... . +...+..+.++++++.+||||+++.|. +
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~ 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence 4789999999999988887764 455 79999998754321 0 111234467899999999999998875 4
Q ss_pred HhhccHHHHhccCCCcEEEEcCCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+|..+ .+|||+.++-+|..
T Consensus 194 ~P~~~~~---~l~pg~hV~aiGs~ 214 (301)
T PRK06407 194 TPIFNRK---YLGDEYHVNLAGSN 214 (301)
T ss_pred CcEecHH---HcCCCceEEecCCC
Confidence 4778765 45799887777753
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=55.52 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=66.7
Q ss_pred cCcEEEEEe--CChhhHHHHHHHhhCCCEEEEECCCCC--CCCcc-c----------ccCceecCCHHHHhccCCEEEEc
Q 006758 161 RGLVLGIVG--RSASARALATRSLSFKMSVLYFDVPEG--KGKVT-F----------PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 161 ~GktVGIIG--lG~IG~~vA~~LkafGm~V~~~dr~~~--~~~~~-~----------~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.|++|++|| .+++..+++..+..||++|.++.|..- ..... . ........++++.++++|||..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 489999999999999999999998762 22100 0 11234458999999999999886
Q ss_pred cCC----Chh-------hHhhccHHHHhccCCCcEEEEcC
Q 006758 226 CAV----TDE-------TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 226 lPl----T~~-------T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.-- .+. ..-.|+.+.++.+|++++|..+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 554 111 11336888888888888888775
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.019 Score=60.48 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=44.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc-------c-cccC----ceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV-------T-FPSA----ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~-------~-~~~g----~~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|+|||.|.+|..+|..+...|. +|..+|+....... . .... .....+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999987664 99999986543220 0 0000 1112345 45799999999863
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0043 Score=55.51 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=66.3
Q ss_pred EEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCc-ccccCceecCCHHHHhc--cCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKV-TFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf--Gm~V~-~~dr~~~~~~~-~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|||||+|.+|+.....+... +++|. ++|++...... ....+...+.++++++. ..|+|+++.|.......+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~-- 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA-- 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH--
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH--
Confidence 699999999999999888765 56765 67887643321 11234456789999998 789999999964332211
Q ss_pred HHHHhccCCCcEEEEcC-CChhhcHHHHHHHHHcCCc
Q 006758 238 AECLQHIKPGAFLVNTG-SSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvg-RG~iVDe~AL~~AL~sg~I 273 (632)
...++.=+ .+++.-= --.+-+..+|.++.++...
T Consensus 80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKGV 114 (120)
T ss_dssp HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhCC
Confidence 22332222 5555531 1234455566666665443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.01 Score=64.38 Aligned_cols=90 Identities=12% Similarity=0.243 Sum_probs=64.4
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCCc---cc---ccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGKV---TF---PSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afGm-~V~~~dr~~~~~~~---~~---~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
-++++|||.|..|..-++.+. -+.. +|.+|+|+....+. .. ...+..++++++++.+||||+++.|.+ ++.
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 468999999999988877655 4555 89999998754321 00 112334678999999999999998742 222
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
-+|..+ .+|||+.++-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 567664 4689999888775
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.028 Score=59.53 Aligned_cols=98 Identities=11% Similarity=0.193 Sum_probs=63.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCc---cc-------ccCc-eecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKV---TF-------PSAA-RRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~---~~-------~~g~-~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.+|..+|..|...|+ +|.++|++....+. .+ .... ....+. +.+.+||+|+++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 479999999999999999998884 89999997643320 00 0111 112333 4578999999998763
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.. +..+|- ...+....|.+++|+++ ..+|.-+
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~~~ 124 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDVIT 124 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHHHH
Confidence 21 222221 23455567889999997 4455443
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.017 Score=60.22 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=61.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEE-CCCCCCC--CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYF-DVPEGKG--KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~-dr~~~~~--~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+.+++.+... ++++.++ ++..... ...+..+...+.+++++-...|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4799999999999999998865 5665443 3322111 111112344567888885569999999985322 1 2
Q ss_pred HHHhccCCCcEEEEcCCChhhcH---HHHHHHHHcCCc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGTL 273 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe---~AL~~AL~sg~I 273 (632)
-....|+.|.-++-.+-|.+.|. +.|.++.+++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 22233444444444444444443 445666555443
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.052 Score=60.88 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=75.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCCC----CCC----------------ccccc--CceecCCHHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPEG----KGK----------------VTFPS--AARRMDTLNDL 215 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~~----~~~----------------~~~~~--g~~~~~sL~eL 215 (632)
++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+.. .+. ..++. +.. ..+.+++
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i 307 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSP 307 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCccc
Confidence 589999999999999999999999999999998 53210 000 01110 111 1234444
Q ss_pred hc-cCCEEEEccCCChhhHhhccHHHHhccC--CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 216 LA-ASDVISLHCAVTDETIQIINAECLQHIK--PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 216 L~-~ADVV~l~lPlT~~T~~lI~~~~L~~MK--~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
+. .|||++-|.. .+.|+.+....++ .-.+++-.+.+.+ ..+-.+.|.++.|. .+=|+.
T Consensus 308 ~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~-~vPD~l 368 (445)
T PRK09414 308 WSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL-FAPGKA 368 (445)
T ss_pred cccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE-EECchh
Confidence 44 6999987764 4778888777773 3558888888888 33345677777665 344443
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0071 Score=54.41 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=55.7
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---ccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTF---PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 172 ~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
.-+..|++.|+..|++|.+|||......... ..+.....++++.+..+|+|+++.+. ++-..+--......|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCCC
Confidence 3468899999999999999999875433111 12455567899999999999999986 3333332344556788899
Q ss_pred EEEEc
Q 006758 249 FLVNT 253 (632)
Q Consensus 249 vLINv 253 (632)
+||++
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99997
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.012 Score=53.90 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=53.0
Q ss_pred EEEEEe-CChhhHHHHHHHhh-CCCEEEEE-CCCCCCCC---cccc--cCc---eecCCHHHHhccCCEEEEccCCChhh
Q 006758 164 VLGIVG-RSASARALATRSLS-FKMSVLYF-DVPEGKGK---VTFP--SAA---RRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 164 tVGIIG-lG~IG~~vA~~Lka-fGm~V~~~-dr~~~~~~---~~~~--~g~---~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
+||||| .|.+|+.+.++|.. ..+++..+ ++....+. ..++ .+. ...+.-.+.+..+|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 689999 99999999999986 46665544 44442332 1111 001 1111123445999999999985322
Q ss_pred HhhccHHHHhccCCCcEEEEcCCCh
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
..+. ... ++.|..+|+.+..-
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSSTT
T ss_pred HHHH-HHH---hhCCcEEEeCCHHH
Confidence 2221 112 57899999987643
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.014 Score=64.18 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=65.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH--------
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI-------- 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~-------- 233 (632)
.++|.|||+|.+|.++|+.|+..|++|.++|++..................+.+..++|+|+.+.+..+...
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 468999999999999999999999999999976543221000000111233345577999998876654311
Q ss_pred --hhccHHHH--hc--c-CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 --QIINAECL--QH--I-KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 --~lI~~~~L--~~--M-K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.++....+ .. + ..-.+-|--+-|+.--..-|...|..
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence 12222121 11 1 11235555556777666666666664
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.035 Score=57.52 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=61.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
-++-|+|.|.+++.+|+.++.+|++|.++|+++..... ..++.++.+....| .+.+.
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-------------~~~~~~~~~~~~~~----------~~~~~ 157 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-------------DLPDGVATLVTDEP----------EAEVA 157 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-------------cCCCCceEEecCCH----------HHHHh
Confidence 46899999999999999999999999999977531110 11123443322222 12223
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 243 ~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.+.+.+.+|=+.++.-.|..+|..+|......
T Consensus 158 ~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~ 189 (246)
T TIGR02964 158 EAPPGSYFLVLTHDHALDLELCHAALRRGDFA 189 (246)
T ss_pred cCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence 35567778888899999999999999544443
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.013 Score=59.50 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=63.5
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cc--c---ccC-------------------ce-
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VT--F---PSA-------------------AR- 207 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~--~---~~g-------------------~~- 207 (632)
...|.+++|.|||+|.+|..+|+.|...|+ ++.++|...-... .. + ..| +.
T Consensus 16 q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 16 QEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 356899999999999999999999999998 7888886532111 00 0 000 00
Q ss_pred ---e--cCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 208 ---R--MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 208 ---~--~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
. ..++.+++..+|+|+.|+. +..++.++++.... .+.-+|..+
T Consensus 96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 1 1234567888999888876 56777777765544 345566664
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0093 Score=64.52 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=34.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~ 198 (632)
.|++|+|+|+|..|....+.++++|++|+++|++....
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~ 203 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL 203 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH
Confidence 58999999999999999999999999999999987544
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.014 Score=56.38 Aligned_cols=38 Identities=16% Similarity=-0.048 Sum_probs=35.1
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
-+|.|++|.|||-|.+|...++.|...|++|.++++..
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 57999999999999999999999999999999997654
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.077 Score=59.53 Aligned_cols=157 Identities=13% Similarity=0.070 Sum_probs=91.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC-----C-------------------ccccc--CceecCCH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG-----K-------------------VTFPS--AARRMDTL 212 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~-----~-------------------~~~~~--g~~~~~sL 212 (632)
+|.|++|.|.|+|++|...|+.|..+|++|++++...... . ..++. ++.. .+.
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~-i~~ 303 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY-VEG 303 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE-cCC
Confidence 5899999999999999999999999999999955421100 0 00000 1111 233
Q ss_pred HHHh-ccCCEEEEccCCChhhHhhccHHHHhccCC-Cc-EEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCC-CCCC
Q 006758 213 NDLL-AASDVISLHCAVTDETIQIINAECLQHIKP-GA-FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP-QWME 288 (632)
Q Consensus 213 ~eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~-GA-vLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P-~~~~ 288 (632)
++++ ..|||++-| .+.+.|+++....++. |. +++--+.| .+..+|. +.|.++.|. .+=|+.-+- --.-
T Consensus 304 d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~-~~PD~~aNAGGViv 375 (444)
T PRK14031 304 ARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL-YAPGKAANAGGVSV 375 (444)
T ss_pred cccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE-EeChhhccCCCeee
Confidence 4442 458988665 4578899999888864 33 66666677 5555555 445555554 334443220 0000
Q ss_pred ccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 006758 289 AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 289 ~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
+.+--..| .-+..|..++..+++.+.+.+.+.+.+.
T Consensus 376 s~~E~~qn---~~~~~W~~eeV~~~L~~~m~~~~~~v~~ 411 (444)
T PRK14031 376 SGLEMTQN---SIKLSWSSEEVDEKLKSIMKNIHEACVQ 411 (444)
T ss_pred ehhhhhcc---ccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00000112 2234556677777777776666666543
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.013 Score=63.70 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=49.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-----cCCHHHHhccCCEEEE
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLAASDVISL 224 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~~ADVV~l 224 (632)
++||||||-|-.|+-|+..++.+|++|++.|+............... ...+.++++.||||..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 47899999999999999999999999999999876554332222211 2258899999999976
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.033 Score=59.79 Aligned_cols=96 Identities=18% Similarity=0.278 Sum_probs=62.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---------ccc-c--cCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---------VTF-P--SAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---------~~~-~--~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
++.++|+|||.|.||..+|..+...|. +|+.+|.++.... ..+ . ..+....++ +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999887774 8999998765221 000 0 112222455 5679999999977
Q ss_pred CCC----------------hhhHhhcc--HHHHhccCCCcEEEEcCCC
Q 006758 227 AVT----------------DETIQIIN--AECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 227 PlT----------------~~T~~lI~--~~~L~~MK~GAvLINvgRG 256 (632)
-.. .++..++. .+.+....|.+++||++--
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP 130 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP 130 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 321 11222221 1234445578899999853
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.019 Score=60.49 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=33.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~ 195 (632)
+.|+++.|+|.|.+|+++|..|...|++ |.+++|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 5789999999999999999999999996 99999975
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.016 Score=59.40 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=64.0
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCC-EEEEECCCCCCCCc-ccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLS--FKM-SVLYFDVPEGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fGm-~V~~~dr~~~~~~~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+.+.+.++. .++ .|.+||++...... ....+.....+++|+++..|+|+=|..- +..+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e---- 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVRE---- 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHH----
Confidence 379999999999999999984 245 47888988754431 1122334457899999999999888653 22222
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
-..+.||.|-=+|=++-|.+.|+.-
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l 100 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGL 100 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHH
Confidence 2334455665566666677775543
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0076 Score=56.29 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=70.9
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--------------eecCCHHHHhccCCEEEEccCCCh
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--------------RRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--------------~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
|.|+|.|.||.-+|..|+..|.+|..+.+.. ..+.....+. .......+.....|+|++|+...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~- 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY- 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence 6899999999999999999999999999876 1110000000 01111234677899999998753
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEe
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaL 278 (632)
++...+.. .-..+.+++.+|-.--| +-.++.|.+.+....+.++..
T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~ 124 (151)
T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT 124 (151)
T ss_dssp GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence 34555543 55566777777777666 444666776665556654443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.03 Score=61.61 Aligned_cols=108 Identities=10% Similarity=0.130 Sum_probs=75.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------ccccc------------C-ceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFPS------------A-ARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------~~~~~------------g-~~~~~sL~eLL~~ADVV 222 (632)
++|.|+|.|-+|...|.++..+|.+|+.+|......+ +-++. + .....+..+.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 4789999999999999999999999999998753221 11111 1 23346788899999999
Q ss_pred EEccCCChhhHhhcc--------HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 223 SLHCAVTDETIQIIN--------AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~--------~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++++|..+.-.|-++ ++....++..+++|+=|.-.+=-.+.+.+-+.+
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~ 136 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIRE 136 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHh
Confidence 999997665333332 346667776699999887555444444444443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.063 Score=56.95 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=74.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH---hh--
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI---QI-- 235 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~---~l-- 235 (632)
.|++++|||--.=-..++++|...|++|+++.-....- ...++....+.++++.++|+|++-+|.+.+.. ..
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 37899999999988999999999999999865322110 12345555677899999999999999765421 11
Q ss_pred -----ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 236 -----INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 236 -----I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++.+.++.|++|.+++ +|.+..- +.+.+.+..|.
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~ 116 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK 116 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe
Confidence 3578999999998544 4444322 33455666776
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.02 Score=60.45 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=55.5
Q ss_pred EEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc---ccc--CceecCCHHHHhccCCEEEEccCCC--
Q 006758 165 LGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT---FPS--AARRMDTLNDLLAASDVISLHCAVT-- 229 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-------~~---~~~--g~~~~~sL~eLL~~ADVV~l~lPlT-- 229 (632)
|+|||.|.||..+|..+...|. +|+.+|++..... .. ... ......+.+ .+++||+|+++....
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~ 79 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence 6899999999999999886655 9999998764221 00 000 111223444 589999999987421
Q ss_pred h---------hhHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 230 D---------ETIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~---------~T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
+ ++..++- ...+....|.+++|+++-
T Consensus 80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 1222221 123444557778888874
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.041 Score=58.89 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=59.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccc--CceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPS--AARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+|+|||.|.||..+|-.|...|. ++..||.+..... ..+.. .+....+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 489999999999999998876555 8999998764221 11111 1121245554 89999999965432
Q ss_pred h---hhH--------hhcc--HHHHhccCCCcEEEEcCC
Q 006758 230 D---ETI--------QIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~---~T~--------~lI~--~~~L~~MK~GAvLINvgR 255 (632)
. .|+ .++- .+.+....|.+++|+++-
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 2 233 1221 134555678999999984
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.041 Score=59.57 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=62.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCc---cccc--Cc--eecC--CHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGKV---TFPS--AA--RRMD--TLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~~---~~~~--g~--~~~~--sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||. |.+|+.+++.|..+ ++++.. +++.....+. .++. +. ..+. +.++++..+|+|++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 37999998 99999999999987 788884 4654322221 1110 10 0122 45667678999999999632
Q ss_pred hhHhhccHHHHhcc-CCCcEEEEcCCChhhcHHHHH
Q 006758 231 ETIQIINAECLQHI-KPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 231 ~T~~lI~~~~L~~M-K~GAvLINvgRG~iVDe~AL~ 265 (632)
. .+....+ +.|..+|+.+..--.+..+++
T Consensus 81 -s-----~~~~~~~~~~G~~VIDlS~~fR~~~~~~y 110 (346)
T TIGR01850 81 -S-----AELAPELLAAGVKVIDLSADFRLKDPEVY 110 (346)
T ss_pred -H-----HHHHHHHHhCCCEEEeCChhhhcCChhhh
Confidence 2 2222322 578999999876666644443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0089 Score=62.81 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=50.1
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc---c--Cceec---CCHHHHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP---S--AARRM---DTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~---~--g~~~~---~sL~eLL~~ADVV~l~lPlT 229 (632)
+.|+++.|||.|.+|++++..|...|+ +|.+++|+....+.... . ..... .++.+.+..+|+||.+.|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 578999999999999999999999998 79999998643321100 0 01111 23345667889999998873
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.022 Score=63.19 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEEEeCChhhHHHHH---HH---hhCCCEEEEECCCCCCCCc------------ccccCceecCCHHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALAT---RS---LSFKMSVLYFDVPEGKGKV------------TFPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~---~L---kafGm~V~~~dr~~~~~~~------------~~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+|+|||.|.+|..++- .+ ...|.+|..||++....+. .....+....++.+.+..||+|+.+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence 6999999999998665 32 3346799999998643220 0111223356789999999999999
Q ss_pred cCC
Q 006758 226 CAV 228 (632)
Q Consensus 226 lPl 228 (632)
+|.
T Consensus 82 i~~ 84 (423)
T cd05297 82 IQV 84 (423)
T ss_pred eEe
Confidence 994
|
linked to 3D####ucture |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.068 Score=49.40 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=58.1
Q ss_pred EEEEEeC-ChhhHHHHHHHhh-CCCEEE-EECCCCCCCC--------cccccCceecCCHHHHhccCCEEEEccCCChh-
Q 006758 164 VLGIVGR-SASARALATRSLS-FKMSVL-YFDVPEGKGK--------VTFPSAARRMDTLNDLLAASDVISLHCAVTDE- 231 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~Lka-fGm~V~-~~dr~~~~~~--------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~- 231 (632)
+|+|+|+ |+||+.+++.+.. -|+++. ++++...... .....+....+++++++..+|+|+-.. +|+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~ 79 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA 79 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence 6999999 9999999999997 688854 4566651111 011234455689999999999998776 344
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+...+ +.. ++.|.-+|-...|---.+.+.++.+.
T Consensus 80 ~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 80 VYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp HHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred hHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence 32222 222 23355555555555433334444443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.066 Score=59.73 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=69.5
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-----cccccCceec--CCHHHHhccCCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-----VTFPSAARRM--DTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-----~~~~~g~~~~--~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
+.+++|+|+|+|..|.++|+.|+..|++|.++|....... .....++... ....+.+..+|+|+.. |.-+.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~ 90 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID 90 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence 5789999999999999999999999999999997653221 0111132221 2224556789999987 433222
Q ss_pred Hhh-----------ccH-HHH-hccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 233 IQI-----------INA-ECL-QHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 233 ~~l-----------I~~-~~L-~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..+ +++ +.+ ...+.-.+-|--+.|+..-..-|...|..
T Consensus 91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 111 222 122 22233356666667888777777777764
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.18 Score=53.85 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=51.0
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc------ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF------PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~------~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|+|+|= +++..+++..+..||++|.+..|..-...... ..| .....++++.++++|||..-
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 224 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTD 224 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 68999999998 78999999999999999999998652221111 112 33457999999999999875
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.023 Score=58.67 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=34.8
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|..++|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus 27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 357999999999999999999999999998 788888763
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.25 Score=49.64 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=48.5
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccC-cee-cCCH-HHHhccCCEEEEccCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSA-ARR-MDTL-NDLLAASDVISLHCAVT 229 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g-~~~-~~sL-~eLL~~ADVV~l~lPlT 229 (632)
.+|.|++|.|||.|.+|...++.|...|++|+++++...... .....+ +.. ...+ .+.+..+|+|+.+....
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~ 81 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP 81 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence 468999999999999999999999999999999997643211 011111 110 0111 33466778777776543
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.028 Score=57.87 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=34.8
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++++|.|+|.|.+|..+|..|...|. ++.++|...
T Consensus 19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 19 QEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 356899999999999999999999999997 788888764
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.0076 Score=61.89 Aligned_cols=135 Identities=15% Similarity=0.085 Sum_probs=85.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---------------cc---cccC-----------ceecCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---------------VT---FPSA-----------ARRMDT 211 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---------------~~---~~~g-----------~~~~~s 211 (632)
.-+.|+|||.|.||..||+.+...|.+|..+|.+..... +. .+.+ .+...+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999999865322 00 0000 112345
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCcc
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAW 290 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~p 290 (632)
+.+++.++|+|+=++--+-+.+.-|-++.=...|+.++|+ |+++ +-...+..+++..... ++|-.|.++|-
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~srf-~GlHFfNPvPv---- 161 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSRF-AGLHFFNPVPV---- 161 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhhh-ceeeccCCchh----
Confidence 6677778888876665444433333344444567777765 5555 3455677777765544 68887876443
Q ss_pred ccCCCcEEEcCCCC
Q 006758 291 VREMPNVLILPRSA 304 (632)
Q Consensus 291 L~~~pNVIiTPHiA 304 (632)
-++=.||=|+..+
T Consensus 162 -MKLvEVir~~~TS 174 (298)
T KOG2304|consen 162 -MKLVEVIRTDDTS 174 (298)
T ss_pred -HHHhhhhcCCCCC
Confidence 2334566666543
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.085 Score=59.66 Aligned_cols=103 Identities=13% Similarity=0.192 Sum_probs=71.3
Q ss_pred cccCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCc--cc---------c-----------cCc
Q 006758 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKV--TF---------P-----------SAA 206 (632)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~~--~~---------~-----------~g~ 206 (632)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||....... .+ + ...
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 478999999998 567889999999999999999998533211 01 0 012
Q ss_pred eecCCHHHHhccCCEEEEccCCChhhHhhccHH-HHhccCCCcEEEEcCCChhhcHHHHH
Q 006758 207 RRMDTLNDLLAASDVISLHCAVTDETIQIINAE-CLQHIKPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 207 ~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~-~L~~MK~GAvLINvgRG~iVDe~AL~ 265 (632)
...+++.+.++.||+|+++.... +-+. ++-+ ....|++..++||. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 33557778999999999998863 3333 3433 35567766688985 43 45665554
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.063 Score=57.12 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=58.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCc-c--cccC-------ceecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKV-T--FPSA-------ARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~~-~--~~~g-------~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||.|.+|..+|..|...| .+|..+|++...... . +... .....+. +.+++||+|+++++...
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~~ 79 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGANQ 79 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCCC
Confidence 36999999999999999999888 589999987632210 0 0000 0112344 56899999999998642
Q ss_pred h-----------hHhhcc--HHHHhccCCCcEEEEcC
Q 006758 231 E-----------TIQIIN--AECLQHIKPGAFLVNTG 254 (632)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~GAvLINvg 254 (632)
. +..++. .+.+....+.+++++++
T Consensus 80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2 112221 12344455778888885
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.057 Score=57.77 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-----------c----------------ccccCc--e------
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-----------V----------------TFPSAA--R------ 207 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-----------~----------------~~~~g~--~------ 207 (632)
+|.|||.|.+|..+|+.|.+.|. ++.++|...-... . .....+ .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999999998 7888885421100 0 000000 0
Q ss_pred -----------------ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 208 -----------------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 208 -----------------~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
....+.+++.++|+|+.++ .+-+++.+++...... +..+||.+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aal 141 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAAL 141 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEEe
Confidence 1113678899999999998 5678888887655443 337777654
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.015 Score=59.33 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=50.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--c--cccC-----ceecCCHHHH-hccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--T--FPSA-----ARRMDTLNDL-LAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~--~--~~~g-----~~~~~sL~eL-L~~ADVV~l~lPlT~~ 231 (632)
+++.|||+|.+|..+|+.|...|++|+.+|++...... . +... +.....|.++ +.++|+++.+......
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 47899999999999999999999999999988754332 1 1111 1122346666 7889999998876444
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.05 Score=59.12 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=92.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----ccCceecCCHHHH---hccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAARRMDTLNDL---LAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----~~g~~~~~sL~eL---L~~ADVV~l~lPlT~~T~~ 234 (632)
..||+||++.||+.++.+....|+.|.+|+|+....+..+ ...+....+++++ ++.--+|++.+-...-.-.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 4589999999999999999999999999999875544111 1122334577776 5567788888776655555
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
+| ++....|-+|-+||+-|...--|...-.+.|....|...+.-|.-
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSG 133 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSG 133 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccC
Confidence 55 578888999999999999999999999999998887766666653
|
|
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.033 Score=52.82 Aligned_cols=86 Identities=27% Similarity=0.268 Sum_probs=52.1
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhcc
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~M 244 (632)
+-|+|.|.+|+++++.++.+|++|.++|+.+.. + +.++-+. +.+. ..+. +.+ .+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----~--------------~~~~~~~-~~~~----~~~~--~~~-~~ 54 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----F--------------PEADEVI-CIPP----DDIL--EDL-EI 54 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------------TTSSEEE-CSHH----HHHH--HHC--S
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----c--------------CCCCccE-ecCh----HHHH--hcc-CC
Confidence 469999999999999999999999999988421 1 1333322 2221 1111 122 46
Q ss_pred CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEe
Q 006758 245 KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (632)
Q Consensus 245 K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaL 278 (632)
.+++++| +.++.-.|..+|..+|.. .....++
T Consensus 55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 6677767 889999999999999887 4443443
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.027 Score=58.28 Aligned_cols=113 Identities=18% Similarity=0.175 Sum_probs=72.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE--------CCCCCCCC-------------cccc---c-CceecCCHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYF--------DVPEGKGK-------------VTFP---S-AARRMDTLN 213 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~--------dr~~~~~~-------------~~~~---~-g~~~~~sL~ 213 (632)
.++|+++.|-|+|++|..+|+.|...|++|+++ |+..-..+ ..++ . +...+ +-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 107 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PND 107 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccc
Confidence 489999999999999999999999999999887 43321000 0011 0 11111 222
Q ss_pred -HHh-ccCCEEEEccCCChhhHhhccHHHHh-ccCCC-cEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 214 -DLL-AASDVISLHCAVTDETIQIINAECLQ-HIKPG-AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 214 -eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~-~MK~G-AvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+++ ..|||++.|. ..+.|+.+... .++.| -+||--+.+.+. .+|.. .|.+..|. .+=|.
T Consensus 108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~-viPD~ 170 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL-VIPDF 170 (244)
T ss_dssp CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E-EE-HH
T ss_pred cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE-EEcch
Confidence 455 5799999883 34778888877 77655 466677777765 44444 77777765 34443
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.041 Score=60.81 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=94.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------------------CCCccc-ccCceecCCHHHHhc-c
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------------------KGKVTF-PSAARRMDTLNDLLA-A 218 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~------------------~~~~~~-~~g~~~~~sL~eLL~-~ 218 (632)
.|.|+||.|=|+|++|+.+|+.|...|++|+++|.+.. ...... ..++..... ++++. .
T Consensus 204 ~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~~ 282 (411)
T COG0334 204 DLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEVD 282 (411)
T ss_pred CcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-ccccccc
Confidence 38999999999999999999999999999999986654 100000 012233322 55544 5
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
|||++=| .+.+.|+.+....++-. +++-.+.|++-. +|--..++.|-+. +=|..-+ .-.|+
T Consensus 283 cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~-eA~~i~~erGIl~--~PD~laN----------AGGV~ 343 (411)
T COG0334 283 CDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTP-EADEILLERGILV--VPDILAN----------AGGVI 343 (411)
T ss_pred CcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCH-HHHHHHHHCCCEE--cChhhcc----------CcCee
Confidence 8988544 56788999999999866 889999998763 3333333444332 3333221 11222
Q ss_pred EcC--------CCCCccHHHHHHHHHHHHHHHHHHHHcC
Q 006758 299 ILP--------RSADYSEEVWMEIRDKAISVLQTFFFDG 329 (632)
Q Consensus 299 iTP--------HiAg~T~ea~~~~~~~a~~nL~~fL~~G 329 (632)
.+= -..|..+++..++..++.+..+.+....
T Consensus 344 vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~ 382 (411)
T COG0334 344 VSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAA 382 (411)
T ss_pred eehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1224456677777777777776665433
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.29 Score=52.30 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=50.4
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|+++|= +++..+++..+..||++|.+..|..-.....+ ..+ .....++++.+++||||..-
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~ 223 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTD 223 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 68999999997 78889999999999999999998653221100 012 33467999999999999884
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.062 Score=54.37 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=34.5
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
+..|+..+|.|||.|.+|..+|..|...|. ++.++|..
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356899999999999999999999999998 59999987
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.043 Score=59.42 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=35.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|..++|.|||.|.+|..+|..|...|. +|.++|...
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 467999999999999999999999999999 899999863
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.055 Score=57.49 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=34.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++.+|.|||+|.+|..+|..|.+.|. ++.++|...
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 467999999999999999999999999998 788888663
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.037 Score=58.22 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=68.7
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC------cccccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
.+|+..|++|+|+ |.||..+|+.|.+.++.....-|...... ...+.+.....+++..+.+.|+++-.....
T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~- 241 (351)
T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMP- 241 (351)
T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecC-
Confidence 5789999999997 99999999999998886665554322111 111233334557777777777776654432
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHH
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~ 262 (632)
+-..|+. .++|||+++|+-|+-.=||+.
T Consensus 242 -~g~~I~p---q~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 242 -KGVEIFP---QHLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred -CCceech---hhccCCeEEEcCCcCcccccc
Confidence 2356776 458899999999987766553
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.034 Score=61.11 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=57.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cC-------ceecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SA-------ARRMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g-------~~~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
++|.|+|+|.+|+.+|+.|...|.+|+++|++......... .+ ......|+++ +..+|+|+++++....+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n- 79 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN- 79 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH-
Confidence 46899999999999999999999999999987543221111 11 1122345556 78899999998864433
Q ss_pred hhccHHHHhcc-CCCcEEEEc
Q 006758 234 QIINAECLQHI-KPGAFLVNT 253 (632)
Q Consensus 234 ~lI~~~~L~~M-K~GAvLINv 253 (632)
++-......+ +...+++-+
T Consensus 80 -~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 80 -MVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred -HHHHHHHHHhcCCCeEEEEE
Confidence 2223334444 333444443
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.06 Score=58.28 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=44.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCC-CC---c--c-------------cc-cCceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGK-GK---V--T-------------FP-SAARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~-~~---~--~-------------~~-~g~~~~~sL~eLL~~ADV 221 (632)
.+|||+|+|+||+.+++.+... +|+|.+....... .. . . +. .+.....++++++..+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 3699999999999999988754 7887776432210 00 0 0 00 122233567888888999
Q ss_pred EEEccCC
Q 006758 222 ISLHCAV 228 (632)
Q Consensus 222 V~l~lPl 228 (632)
|+.|.|.
T Consensus 82 VIdaT~~ 88 (341)
T PRK04207 82 VVDATPG 88 (341)
T ss_pred EEECCCc
Confidence 9999875
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.05 Score=59.88 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=67.1
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCc---ccc----cCceecCCHHH-HhccCCEEEEccCCCh
Q 006758 161 RGLVLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKV---TFP----SAARRMDTLND-LLAASDVISLHCAVTD 230 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~---~~~----~g~~~~~sL~e-LL~~ADVV~l~lPlT~ 230 (632)
..++|+|+|. |.+|+.+.+.|... +++|..+.+....++. ..+ .......+++. .++++|+|++++|..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~- 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG- 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence 4568999998 89999999999987 7898888765433321 010 00111222332 258899999999962
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
.. .+....|+.|..+|+.+..-..+..+.++.
T Consensus 116 ~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~~y~~ 147 (381)
T PLN02968 116 TT-----QEIIKALPKDLKIVDLSADFRLRDIAEYEE 147 (381)
T ss_pred HH-----HHHHHHHhCCCEEEEcCchhccCCcccchh
Confidence 23 344444567899999998777776665543
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.11 Score=57.29 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=64.0
Q ss_pred cccCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCC
Q 006758 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
.+.|++|+|+|+ ..-...+++.|...|++|.+|||........ ......++++.+..||+|+++.+.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVK---GLPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhh---hcccCCCHHHHHhCCCEEEEecCC
Confidence 368999999998 4577899999999999999999986432211 111247899999999999999886
Q ss_pred ChhhHhhccHHHHhc-cCCCcEEEEc
Q 006758 229 TDETIQIINAECLQH-IKPGAFLVNT 253 (632)
Q Consensus 229 T~~T~~lI~~~~L~~-MK~GAvLINv 253 (632)
.. -+. ++-+.+.. |+ ..++|++
T Consensus 387 ~~-~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 387 DE-FKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HH-Hhc-cCHHHHHHhcC-CCEEEeC
Confidence 32 222 34444444 54 5578874
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.14 Score=54.83 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=51.4
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||= +++..+++..+..||++|.+..|..-... ... ......++++.++.||||....
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~-~~~-~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPE-GMP-EYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcc-ccc-ceEEECCHHHHhCCCCEEEECC
Confidence 68999999987 58999999999999999999998653221 111 1245689999999999998743
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.089 Score=58.03 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=64.0
Q ss_pred ccCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
|.|++|||+|+- .-...++.+|+..|++|.+|||-........-.+.....+++++++.||+|+++.-.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew- 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW- 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-
Confidence 789999999984 457889999999999999999986443311111356678999999999999998654
Q ss_pred hhhHhhccHHHHhccCCCcEEEE
Q 006758 230 DETIQIINAECLQHIKPGAFLVN 252 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLIN 252 (632)
++-+.+ +-+.+ .|| +.++|+
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 233332 33344 665 556665
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.15 Score=54.42 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=51.0
Q ss_pred ccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|++||-| ++..+++..+..||++|.+..|..-.....+ ..| +....++++.++.||||...
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~ 223 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVT 223 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEEC
Confidence 689999999995 9999999999999999999998653211111 112 23467999999999999773
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.37 Score=54.28 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=89.0
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE-CCCC----CCCC-------------------ccccc---CceecC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYF-DVPE----GKGK-------------------VTFPS---AARRMD 210 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~-dr~~----~~~~-------------------~~~~~---g~~~~~ 210 (632)
.+|.|+||.|=|+|++|+.+|+.|..+|++|+.+ |.+. ..+. ..+.. ++...
T Consensus 233 ~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~- 311 (454)
T PTZ00079 233 DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV- 311 (454)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-
Confidence 3589999999999999999999999999999944 4441 0000 01100 12222
Q ss_pred CHHHHh-ccCCEEEEccCCChhhHhhccHHHHhcc-CCCc-EEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCC-CC
Q 006758 211 TLNDLL-AASDVISLHCAVTDETIQIINAECLQHI-KPGA-FLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGP-QW 286 (632)
Q Consensus 211 sL~eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~~M-K~GA-vLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P-~~ 286 (632)
+-++++ -.|||.+-| .|.+.|+.+....+ +.++ +++--+-+.+.. + -.+.|.+..|. .+=|..-+- --
T Consensus 312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-e-A~~~L~~~GI~-~~PD~~aNAGGV 383 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTI-E-ATHLFKKNGVI-FCPGKAANAGGV 383 (454)
T ss_pred CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCH-H-HHHHHHHCCcE-EEChhhhcCCCe
Confidence 222332 368988766 36788888877755 3333 556666676654 3 34566766665 334433220 00
Q ss_pred CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHH
Q 006758 287 MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 287 ~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL 326 (632)
.-+.|--..|.. +..|..+++..++.+.+.+.....+
T Consensus 384 ~vS~~E~~Qn~~---~~~W~~eeV~~~L~~~M~~~~~~~~ 420 (454)
T PTZ00079 384 AISGLEMSQNAA---RLQWTAEEVDEKLREIMKSIFEACV 420 (454)
T ss_pred eeehHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 001000011221 4566667776666666665555544
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.059 Score=48.06 Aligned_cols=86 Identities=13% Similarity=0.166 Sum_probs=55.2
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHH-HhccCCEEEEccCCChhhHhhc
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLND-LLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~e-LL~~ADVV~l~lPlT~~T~~lI 236 (632)
|.|+|+|.+|+.+++.|+..+.+|+++|.++.........+. .....|.+ =+.++|.|+++.+.... ++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~--n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE--NLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH--HHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH--HHH
Confidence 579999999999999999977799999988643221111111 11122333 26789999999885443 343
Q ss_pred cHHHHhccCCCcEEEE
Q 006758 237 NAECLQHIKPGAFLVN 252 (632)
Q Consensus 237 ~~~~L~~MK~GAvLIN 252 (632)
-...+..+-+...+|-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 3556666666655553
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.066 Score=58.18 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=46.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-----ecCCHHHHhccCCEEEE
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RMDTLNDLLAASDVISL 224 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~-----~~~sL~eLL~~ADVV~l 224 (632)
.++|||||-|..|+.++..++.+|++|+++|+++......+..... ..+.+.+++..||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 3789999999999999999999999999999876443211211111 12247778889999854
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.11 Score=49.63 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=48.9
Q ss_pred EEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----ccccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 165 LGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV-----TFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
|.|+|. |.+|+.+++.|...|.+|.++.|+...... ..........++.+.+..+|+|+.+++.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 678994 999999999999999999999998753221 0001112234567788899999999976444
|
... |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.043 Score=59.02 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=33.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|+.|||+|+|-+|.--.+.++|||++|+++|+...
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 799999999999999999999999999999998863
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.13 Score=57.22 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=68.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEc--cCCC-h----h
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH--CAVT-D----E 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~--lPlT-~----~ 231 (632)
.+.|++|.|||+|.+|.++|+.|+..|++|.++|............++.....-.+-+..+|+|+.. +|.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 4678999999999999999999999999999999664322111111222111111235679988863 2321 1 1
Q ss_pred ---hHhh----ccH-HHHhc-c-----CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 ---TIQI----INA-ECLQH-I-----KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 ---T~~l----I~~-~~L~~-M-----K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++.. +.. +.+.. + +...+-|.-+.|+.--..-|...|+.
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence 1111 332 22222 2 33466777778998877777888875
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.53 Score=51.55 Aligned_cols=67 Identities=7% Similarity=0.077 Sum_probs=48.0
Q ss_pred cccCcEEEEEeCC--------hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccC
Q 006758 159 RCRGLVLGIVGRS--------ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAAS 219 (632)
Q Consensus 159 ~L~GktVGIIGlG--------~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~A 219 (632)
.|+|++|+|+|.| ++..+++..+..|||+|.+..|..-...... ..+ .....++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 3446778888899999999998642111000 112 23468999999999
Q ss_pred CEEEEc
Q 006758 220 DVISLH 225 (632)
Q Consensus 220 DVV~l~ 225 (632)
|||..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999886
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.14 Score=54.92 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=50.7
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEE
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
+.|.+|++||= +++..+++..+..||+ +|.+..|..-..............++++.++.+|||..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 68999999998 5999999999999999 99999986522111111224446899999999999977
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.22 Score=55.77 Aligned_cols=107 Identities=8% Similarity=0.121 Sum_probs=75.5
Q ss_pred ccCcEEEEEeC----ChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 160 CRGLVLGIVGR----SASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 160 L~GktVGIIGl----G~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
+.-++|+|||. |.+|..+.+.++..|+ +|+.+++..... .+...+.+++++-...|++++++|. +.+.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~ 78 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPA-KYVP 78 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCH-HHHH
Confidence 46688999999 8899999999998887 798889875322 3556678999998889999999995 3445
Q ss_pred hhccHHHHhccCC-CcEEEEcCCCh-----hhcHHHHHHHHHcCCcc
Q 006758 234 QIINAECLQHIKP-GAFLVNTGSSQ-----LLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 234 ~lI~~~~L~~MK~-GAvLINvgRG~-----iVDe~AL~~AL~sg~I~ 274 (632)
.++.+ ..+ ..- .+++|.-+-++ ...+++|.++.+++.+.
T Consensus 79 ~~l~e-~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 79 QVVEE-CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred HHHHH-HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 55532 333 343 44444333322 23467788888877766
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.076 Score=54.31 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=34.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++++|.|||.|.+|..+|..|...|. ++.++|...
T Consensus 22 q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467999999999999999999999999998 788888654
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.084 Score=52.78 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=35.3
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|.+++|.|||+|.+|..+|+.|...|+ ++..+|...
T Consensus 16 Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 16 QKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 467999999999999999999999999999 699998764
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.45 Score=56.77 Aligned_cols=181 Identities=13% Similarity=0.182 Sum_probs=116.7
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
+..|+|+|.+--. +|=-+++.+|+.+|-. .+.+.+.+|.|.|.|.-|..+|+.|
T Consensus 151 ~~~ip~f~DD~~G---Ta~v~lA~l~na~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l 204 (752)
T PRK07232 151 RMDIPVFHDDQHG---TAIISAAALLNALELV-----------------------GKKIEDVKIVVSGAGAAAIACLNLL 204 (752)
T ss_pred hcCCCeeccccch---HHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEECccHHHHHHHHHH
Confidence 4579999985433 3444677777776521 0347889999999999999999999
Q ss_pred hhCCC---EEEEECCCCC----C-C--C---cccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 182 LSFKM---SVLYFDVPEG----K-G--K---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 182 kafGm---~V~~~dr~~~----~-~--~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
...|+ +++.+|+..- . . . ..+... ....+|.|++..+|+++=.- +-++|+++.+..|.+.+
T Consensus 205 ~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~~M~~~p 278 (752)
T PRK07232 205 VALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEGADVFLGLS-----AAGVLTPEMVKSMADNP 278 (752)
T ss_pred HHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence 99998 7999997631 1 0 0 111111 22358999999999887642 14899999999999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHc--CCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHH
Q 006758 249 FLVNTGSSQLLDDCAVKQLLID--GTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISV 321 (632)
Q Consensus 249 vLINvgRG~iVDe~AL~~AL~s--g~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~n 321 (632)
++.=.+.-.. |..-.+|.+- |.|.+-+- ...|- ...|+++=|-++-..- ..-++|...+++-
T Consensus 279 iifalsNP~~--E~~p~~a~~~~~~~i~atGr--s~~pn-------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~a 347 (752)
T PRK07232 279 IIFALANPDP--EITPEEAKAVRPDAIIATGR--SDYPN-------QVNNVLCFPYIFRGALDVGATTINEEMKLAAVRA 347 (752)
T ss_pred EEEecCCCCc--cCCHHHHHHhcCCEEEEECC--cCCCC-------cccceeecchhhHHHHHcCCccCCHHHHHHHHHH
Confidence 9999998764 3222333332 33443321 11121 4568888886432211 1234555555666
Q ss_pred HHHH
Q 006758 322 LQTF 325 (632)
Q Consensus 322 L~~f 325 (632)
|...
T Consensus 348 la~~ 351 (752)
T PRK07232 348 IAEL 351 (752)
T ss_pred HHhh
Confidence 6554
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.049 Score=61.46 Aligned_cols=111 Identities=11% Similarity=0.067 Sum_probs=69.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceec--CCHHHHhccCCEEEEccCCChhhH----
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM--DTLNDLLAASDVISLHCAVTDETI---- 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~--~sL~eLL~~ADVV~l~lPlT~~T~---- 233 (632)
+.|++|.|+|+|.+|.+.++.|+..|++|.++|............++... ....+.+..+|+|+..-...+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 47899999999999999999999999999999965322111111132221 123456678998888654433211
Q ss_pred ------hhccHHHHh-cc--------CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 ------QIINAECLQ-HI--------KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 ------~lI~~~~L~-~M--------K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.++++-.|. .+ +...+-|--+-|+.--..-|...|+.
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 123332221 11 11245566667888777777777775
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.17 Score=54.97 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=50.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccCceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+.|.+|+|||= .++..+++..+..||++|.++.|..-.....+ ...+....++++.++.+|||..-
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 229 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTD 229 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 378999999997 67888888888899999999998642111001 11133467999999999999883
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.19 Score=53.31 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=32.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+.|+++.|||.|..+++++..|...|+ +|.+++|+.
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 678999999999999999999988897 899999985
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.23 Score=55.91 Aligned_cols=123 Identities=19% Similarity=0.153 Sum_probs=75.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----cccccCceec--CCHHHHhccCCEEEEc--cCCChh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAARRM--DTLNDLLAASDVISLH--CAVTDE 231 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~~~g~~~~--~sL~eLL~~ADVV~l~--lPlT~~ 231 (632)
+.+++|.|+|+|.-|.++|+.|...|++|.++|....... .....++... ....+.+..+|+|+.. +|.+..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence 4599999999999999999999999999999997664411 1111222111 1122667889999986 332221
Q ss_pred --------hHhhccH-HHHhcc---CCCcEEEEcCCChhhcHHHHHHHHHc--------CCcceEEeecCCC
Q 006758 232 --------TIQIINA-ECLQHI---KPGAFLVNTGSSQLLDDCAVKQLLID--------GTLAGCALDGAEG 283 (632)
Q Consensus 232 --------T~~lI~~-~~L~~M---K~GAvLINvgRG~iVDe~AL~~AL~s--------g~I~GAaLDVfE~ 283 (632)
-..+++. +.|.+. .| .+-|--+-|+.--..-+...|++ |.|...++|+.++
T Consensus 85 ~v~~A~~~gi~i~~dieL~~r~~~~~p-~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~ 155 (448)
T COG0771 85 LVEAAKAAGIEIIGDIELFYRLSGEAP-IVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ 155 (448)
T ss_pred HHHHHHHcCCcEEeHHHHHHHhcCCCC-EEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence 0112222 233332 33 55555556887766555555553 5577778888765
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.043 Score=55.75 Aligned_cols=90 Identities=14% Similarity=0.005 Sum_probs=58.3
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cC----ceecCCHHHHhccCCEEEEccCCChhh
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SA----ARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g----~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.+|.|++|.|||-|.+|..=|+.+...|++|+++++........+. .+ ....-.++ .+..+++|+.+++..
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~-~~~~~~lviaAt~d~--- 83 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE-DLDDAFLVIAATDDE--- 83 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh-hhcCceEEEEeCCCH---
Confidence 5799999999999999999999999999999999988721110000 00 00111222 233477777776642
Q ss_pred HhhccHHHHhccCCCcEEEEc
Q 006758 233 IQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINv 253 (632)
-+|+..+...++-.++||+
T Consensus 84 --~ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 --ELNERIAKAARERRILVNV 102 (210)
T ss_pred --HHHHHHHHHHHHhCCceec
Confidence 2455555555555577775
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.12 Score=55.99 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=58.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCc---ccc-cC---ceecCCHHH-HhccCCEEEEccCCChhh
Q 006758 163 LVLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKV---TFP-SA---ARRMDTLND-LLAASDVISLHCAVTDET 232 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~---~~~-~g---~~~~~sL~e-LL~~ADVV~l~lPlT~~T 232 (632)
++|+|||. |.+|+.+++.|..+ ++++..+-......+. .++ .. ...+.++++ .+..+|+|++|+|....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 58999996 99999999999987 7787554332222210 011 00 011233333 45789999999996322
Q ss_pred HhhccHHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
..++ ...++.|..+|+.+-.--.+..+
T Consensus 82 ~~~v----~~a~~aG~~VID~S~~fR~~~~~ 108 (343)
T PRK00436 82 MDLA----PQLLEAGVKVIDLSADFRLKDPE 108 (343)
T ss_pred HHHH----HHHHhCCCEEEECCcccCCCCch
Confidence 2221 12235799999999766565533
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.035 Score=52.53 Aligned_cols=99 Identities=18% Similarity=0.313 Sum_probs=61.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhh--CCCEEEEECCCCCCCC----------cccccCceecCCHHHHhccCCEEEEccCC-
Q 006758 163 LVLGIVGR-SASARALATRSLS--FKMSVLYFDVPEGKGK----------VTFPSAARRMDTLNDLLAASDVISLHCAV- 228 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lka--fGm~V~~~dr~~~~~~----------~~~~~g~~~~~sL~eLL~~ADVV~l~lPl- 228 (632)
.+|+|||. |.+|..+|..|.. ++-++..+|+...... ..............+.+++||+|+++.-.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 47999999 9999999998874 5558999999843211 00001112223667788999999999843
Q ss_pred -Chh---------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 229 -TDE---------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 229 -T~~---------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.+. +..++- ...+....|.+++|.++. .+|.-+
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN--Pvd~~t 125 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN--PVDVMT 125 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS--SHHHHH
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC--cHHHHH
Confidence 331 112221 124445568889998844 466433
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.028 Score=61.00 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=52.6
Q ss_pred EEEEeCChhhHHHHHHHhhCC-C-EEEEECCCCCCCCccc----cc-------CceecCCHHHHhccCCEEEEccCCChh
Q 006758 165 LGIVGRSASARALATRSLSFK-M-SVLYFDVPEGKGKVTF----PS-------AARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG-m-~V~~~dr~~~~~~~~~----~~-------g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
|+|+|.|.+|+.+++.|...+ . +|++.|++....+... .. .+....+|.++++++|+|+.|+|-.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 789999999999999998765 5 8999999875422110 00 1111234778999999999999753
Q ss_pred hHhhccHHH-HhccCCCcEEEEcC
Q 006758 232 TIQIINAEC-LQHIKPGAFLVNTG 254 (632)
Q Consensus 232 T~~lI~~~~-L~~MK~GAvLINvg 254 (632)
++... -..++.|.-.||++
T Consensus 79 ----~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 79 ----FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp ----GHHHHHHHHHHHT-EEEESS
T ss_pred ----hhHHHHHHHHHhCCCeeccc
Confidence 22222 23345688888843
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.15 Score=54.49 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=58.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHh---hCCCEEEEECCCCCCCCc--cccc-C----cee--cCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGR-SASARALATRSL---SFKMSVLYFDVPEGKGKV--TFPS-A----ARR--MDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lk---afGm~V~~~dr~~~~~~~--~~~~-g----~~~--~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||. |.||..+|..+. .++..+..+|+....... .+.. . ... ..++.+.++++|+|++++-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 47999999 999999998773 355689999976432110 1111 1 111 246678889999999998752
Q ss_pred hh---hH-hh------ccHH---HHhccCCCcEEEEcCC
Q 006758 230 DE---TI-QI------INAE---CLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~---T~-~l------I~~~---~L~~MK~GAvLINvgR 255 (632)
.. ++ .+ +-.+ .+....+.+++|+++-
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 21 01 11 1122 3333457889999876
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.3 Score=51.83 Aligned_cols=162 Identities=11% Similarity=0.074 Sum_probs=103.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhC----CC-------EEEEECCCCC----CCC-----cccccCce--ecCCHHHHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSF----KM-------SVLYFDVPEG----KGK-----VTFPSAAR--RMDTLNDLL 216 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf----Gm-------~V~~~dr~~~----~~~-----~~~~~g~~--~~~sL~eLL 216 (632)
.|.+.+|.|+|.|.-|..+|+.+... |+ +++.+|+..- ... ..+..... ...+|.|++
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH
Confidence 47899999999999999999999876 87 8999998741 100 11111111 235899999
Q ss_pred c--cCCEEEEccCCChhhHhhccHHHHhccC---CCcEEEEcCCChhhcHHHHHHHHH--cCC-cceEEe---ecCCCCC
Q 006758 217 A--ASDVISLHCAVTDETIQIINAECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGCAL---DGAEGPQ 285 (632)
Q Consensus 217 ~--~ADVV~l~lPlT~~T~~lI~~~~L~~MK---~GAvLINvgRG~iVDe~AL~~AL~--sg~-I~GAaL---DVfE~P~ 285 (632)
+ ++|+++=+-- .-|+|+++.++.|. +..+|.=.+.-....|+--.++++ +|+ |.+.+. +|..+
T Consensus 102 ~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~-- 175 (279)
T cd05312 102 KAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYN-- 175 (279)
T ss_pred HhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeC--
Confidence 9 8899977531 23899999999998 899999999876544444444444 354 443221 11100
Q ss_pred CCCccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHHHHHHH
Q 006758 286 WMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 286 ~~~~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~nL~~fL 326 (632)
-....--...|+++=|=++-... ..-++|...+++.|..+.
T Consensus 176 Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~ 221 (279)
T cd05312 176 GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLV 221 (279)
T ss_pred CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhC
Confidence 00001124668999897553322 223666667777777764
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.24 Score=54.76 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=70.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----cccc-cC--ceecCCHHHHhccCCEEEEccCCChh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFP-SA--ARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~~-~g--~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++.+++|.|+|.|.+|..+|+.|...|++|.++|+...... ..+. .+ ....+..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 36899999999999999999999999999999998752211 0010 11 12223345667789999987654443
Q ss_pred hHhhc----------c-HHHHhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 TIQII----------N-AECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 T~~lI----------~-~~~L~~-MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..-+. . .+.+.. .+.-.+-|--+.|+..-..-|...|..
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 22111 1 112222 232345555556888777777777764
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.2 Score=53.59 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=49.1
Q ss_pred ccCcEEEEEeCC---hhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-------ccCceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS---ASARALATRSLSF-KMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|+|||-+ ++..+++..+..| |++|.+..|..-.....+ ........++++.+++||||...
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 225 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQT 225 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEEC
Confidence 689999999975 6889999888887 999999998652211111 01123457899999999999884
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.31 Score=53.11 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=61.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccccCcee--cCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARR--MDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~g~~~--~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.||..+|-.|...|. ++..+|....... ..+...... ..+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999998886655 7999998764222 001111111 1244 4489999999986542
Q ss_pred h---hhH--------hhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 230 D---ETI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 230 ~---~T~--------~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
. .|+ .++. ...+....|.+++|+++ ..+|.-.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt--NPvdv~t 161 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS--NPVDVLT 161 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CchHHHH
Confidence 1 122 2221 13445566889999998 3444433
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.086 Score=57.37 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=35.2
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++++|.|||.|.+|..+|..|...|. ++.++|...
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 467999999999999999999999999998 788888764
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.065 Score=61.29 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=34.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+.++++.|+|.|.+|++++..|...|++|++++|+..
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46789999999999999999999999999999998753
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.39 Score=51.69 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=63.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC-cccc---------cCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK-VTFP---------SAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~--~~-~~~~---------~g~~~~~sL~eLL~~ADVV 222 (632)
++|+|||. |.||..+|-.|...|. ++..+|..... .. ...+ ....-.....+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 47999999 9999999998876555 79999985422 11 0000 0111123556889999999
Q ss_pred EEccCCCh---hh--------Hhhcc--HHHHhccC-CCcEEEEcCCChhhcHHHHHHH
Q 006758 223 SLHCAVTD---ET--------IQIIN--AECLQHIK-PGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 223 ~l~lPlT~---~T--------~~lI~--~~~L~~MK-~GAvLINvgRG~iVDe~AL~~A 267 (632)
+++.-... +| ..++. ...+.... |.+++|+++ ..+|.-+.+-.
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~ 139 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM 139 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence 99875422 12 11221 12333344 588999986 56666554433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.16 Score=53.85 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=58.8
Q ss_pred EEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC-------cccc--c--CceecCCHHHHhccCCEEEEccCCChh
Q 006758 165 LGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK-------VTFP--S--AARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~-------~~~~--~--g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
|+|||.|.+|..+|..+...| .++..+|+...... .... . ......+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998878 48999998764222 0000 0 1111233 4688999999999875321
Q ss_pred -----------hHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 232 -----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 232 -----------T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
+..++. ...+....|.+++||++-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 222221 234445558999999983
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.27 Score=53.05 Aligned_cols=96 Identities=17% Similarity=0.290 Sum_probs=61.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccc-------cCce---ecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGKVTFP-------SAAR---RMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~-------~g~~---~~~sL~eLL~~ADVV~l~lP 227 (632)
...+|+|||. |.||..+|..|...+. ++..+|....... ..+ .... ..+++.+.+++||+|+++.-
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~-a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV-AADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCee-EchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 4579999999 9999999999885444 8999998762221 111 1111 12345789999999999865
Q ss_pred CChh-----------hHhhcc--HHHHhccCCCcEEEEcCCCh
Q 006758 228 VTDE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 228 lT~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~ 257 (632)
.... +..++- .+.+....|.+++|+++---
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 4221 111110 12344455889999987633
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.21 Score=53.61 Aligned_cols=96 Identities=13% Similarity=0.272 Sum_probs=61.3
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-ccccc-----Cceec---CCHHHHhccCCEEEEccCCChh
Q 006758 164 VLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VTFPS-----AARRM---DTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~-~~~~~-----g~~~~---~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
+|+|||. |.||..+|-.|...+. ++..+|....... ..+.. ..... +++.+.+++||+|+++.-....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999998875554 8999998762221 00111 11111 1357899999999998765321
Q ss_pred -----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcH
Q 006758 232 -----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 232 -----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
+..++. ...+..-.|.+++|+++- ++|.
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv 121 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS 121 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence 222221 124444568999999875 4554
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.063 Score=56.90 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=48.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---ccccCc--eecCCHHHHh--ccCCEEEEccCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFPSAA--RRMDTLNDLL--AASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~~~~g~--~~~~sL~eLL--~~ADVV~l~lPl 228 (632)
+.|+++.|+|.|-.+++++..|+..|+ +|.+++|+....+. .+.... .....+.++- .++|+||++.|+
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 579999999999999999999999996 89999998754331 111100 0112222221 168999999997
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.41 Score=57.20 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=116.5
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHh
Q 006758 103 LGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (632)
Q Consensus 103 rGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (632)
.+|+++|.+--. +|=-+++.+++.+|-. .+.+.+.+|.|+|.|.-|..+|+.+.
T Consensus 160 ~~ip~f~DD~~G---Ta~v~la~l~~a~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l~ 213 (763)
T PRK12862 160 MKIPVFHDDQHG---TAIIVAAALLNGLKLV-----------------------GKDIEDVKLVASGAGAAALACLDLLV 213 (763)
T ss_pred CCCceEecCccc---HHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEEChhHHHHHHHHHHH
Confidence 479999985533 3444677777776521 13478899999999999999999999
Q ss_pred hCCC---EEEEECCCCC-----CC-----CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcE
Q 006758 183 SFKM---SVLYFDVPEG-----KG-----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 183 afGm---~V~~~dr~~~-----~~-----~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
..|+ +++.+|+..- .. +..+... ....+|.|++..+|+++=.-- -++|+++.++.|.+..+
T Consensus 214 ~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~-~~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v~~M~~~pi 287 (763)
T PRK12862 214 SLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK-TDARTLAEVIEGADVFLGLSA-----AGVLKPEMVKKMAPRPL 287 (763)
T ss_pred HcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh-cccCCHHHHHcCCCEEEEcCC-----CCCCCHHHHHHhccCCE
Confidence 9999 7999997631 10 0111111 123589999999999976432 48999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHc--CCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHHH
Q 006758 250 LVNTGSSQLLDDCAVKQLLID--GTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVL 322 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~s--g~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~nL 322 (632)
+.=.+.-.. |.--.+|.+- |.|.+-+- ...|- ...|+++=|-++-..- ..-++|...+++-|
T Consensus 288 ifalsNP~~--E~~p~~a~~~~~~~i~atGr--s~~p~-------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 356 (763)
T PRK12862 288 IFALANPTP--EILPEEARAVRPDAIIATGR--SDYPN-------QVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAI 356 (763)
T ss_pred EEeCCCCcc--cCCHHHHHHhcCCEEEEECC--cCCCC-------cccceeeccchhhhHHhcCCeeCCHHHHHHHHHHH
Confidence 999988664 3222333333 33433221 11121 4568888887543221 12345555555666
Q ss_pred HHH
Q 006758 323 QTF 325 (632)
Q Consensus 323 ~~f 325 (632)
..+
T Consensus 357 a~~ 359 (763)
T PRK12862 357 AEL 359 (763)
T ss_pred Hhc
Confidence 554
|
|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.5 Score=49.06 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=117.4
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHH
Q 006758 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (632)
Q Consensus 101 ~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (632)
.+..|+|+|.+--. +|=-+++.+|+.+|-. .+.|+..+|.|.|.|.-|-.+|+.
T Consensus 164 ~~~~IPvFhDDqqG---Taiv~lA~llnalk~~-----------------------gk~l~d~kiv~~GAGAAgiaia~~ 217 (432)
T COG0281 164 YRMNIPVFHDDQQG---TAIVTLAALLNALKLT-----------------------GKKLKDQKIVINGAGAAGIAIADL 217 (432)
T ss_pred hcCCCCcccccccH---HHHHHHHHHHHHHHHh-----------------------CCCccceEEEEeCCcHHHHHHHHH
Confidence 34579999986533 3444677777666421 135899999999999999999999
Q ss_pred HhhCCC---EEEEECCCCCCCC--cc--cc-cCce-------ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccC
Q 006758 181 SLSFKM---SVLYFDVPEGKGK--VT--FP-SAAR-------RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245 (632)
Q Consensus 181 LkafGm---~V~~~dr~~~~~~--~~--~~-~g~~-------~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK 245 (632)
+.+.|+ +|+.+|+..--.+ .. .. .... ...+ ++.+..+|+++-+-- .|+|.++.++.|.
T Consensus 218 l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma 291 (432)
T COG0281 218 LVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMA 291 (432)
T ss_pred HHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhc
Confidence 999999 6999998741111 00 00 0000 0111 457889999876632 2999999999999
Q ss_pred CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHH-----HHHHHHHHHHH
Q 006758 246 PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEE-----VWMEIRDKAIS 320 (632)
Q Consensus 246 ~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~e-----a~~~~~~~a~~ 320 (632)
+.+++.=.+.-.. +.+-+.+..-. -++++=.+-.|.++. +..|+++=|.+.-..-. .-++|...+++
T Consensus 292 ~~PiIfalaNP~p---Ei~Pe~a~~~~-~~aaivaTGrsd~Pn----QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~ 363 (432)
T COG0281 292 KHPIIFALANPTP---EITPEDAKEWG-DGAAIVATGRSDYPN----QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAE 363 (432)
T ss_pred cCCEEeecCCCCc---cCCHHHHhhcC-CCCEEEEeCCCCCcc----cccceeEcchhhhhhHhhccccCCHHHHHHHHH
Confidence 9999998887653 22222211111 113333344344333 67799999986543222 23566666777
Q ss_pred HHHHH
Q 006758 321 VLQTF 325 (632)
Q Consensus 321 nL~~f 325 (632)
-|..+
T Consensus 364 AiA~~ 368 (432)
T COG0281 364 AIADL 368 (432)
T ss_pred HHHhh
Confidence 77775
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.15 Score=56.47 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=54.0
Q ss_pred ccccCcEEEEEeC----------ChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEcc
Q 006758 158 RRCRGLVLGIVGR----------SASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 158 ~~L~GktVGIIGl----------G~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
.++.|++|+|+|+ ..-+..+++.|+..| ++|.+|||........+.. .....++++.+..||+|+++.
T Consensus 316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDG-LVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccC-ceeeCCHHHHHhCCCEEEECC
Confidence 3578999999998 557789999999996 9999999985332211111 223478999999999999998
Q ss_pred CC
Q 006758 227 AV 228 (632)
Q Consensus 227 Pl 228 (632)
+.
T Consensus 395 ~~ 396 (415)
T PRK11064 395 DH 396 (415)
T ss_pred CC
Confidence 86
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.061 Score=56.82 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=47.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-----cCc--eecCC---HHHHhccCCEEEEccCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-----SAA--RRMDT---LNDLLAASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~-----~g~--~~~~s---L~eLL~~ADVV~l~lPl 228 (632)
+.|+++.|+|.|..|++++-.|...|+ +|.+++|+....+.... .+. ....+ +.+.+..+|+|+.+.|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 468899999999999999999999998 79999998643221100 000 11112 23456778888888885
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.1 Score=57.45 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=35.1
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|+..+|.|||+|.+|..+|..|...|. ++..+|...
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 457999999999999999999999999998 788888763
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.092 Score=56.26 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=46.1
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEEE-ECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+. .+..++.. +++|.+ +|++.......+ .+...+.+++++++ +.|+|++++|...
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADW-PTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhC-CCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 47999999999985 45655543 788764 677643222112 12345689999996 4799999999643
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.32 Score=52.68 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=63.6
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCc-------cc--ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKV-------TF--PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~-------~~--~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||=+ ++..+++..+..||++|.++.|..-.... .+ ..| +....++++.+++||||..-+
T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~ 233 (334)
T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDV 233 (334)
T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 689999999986 57888888889999999999986422110 00 012 334689999999999998742
Q ss_pred ----CCCh---hhH------hhccHHHHhcc-CCCcEEEEcC
Q 006758 227 ----AVTD---ETI------QIINAECLQHI-KPGAFLVNTG 254 (632)
Q Consensus 227 ----PlT~---~T~------~lI~~~~L~~M-K~GAvLINvg 254 (632)
.... +.+ -.|+.+.++.. |++++|..+.
T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 234 WVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred eeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 1100 111 12566777765 6777777654
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.51 Score=52.10 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=68.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---c-ccccCceec--CCHHHHhcc-CCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---V-TFPSAARRM--DTLNDLLAA-SDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~-~~~~g~~~~--~sL~eLL~~-ADVV~l~lPlT~~T 232 (632)
+.|+++.|+|.|.+|.++|+.|+..|++|.++|....... . ....+.... ....+++.. .|+|+..--..+..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTN 82 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCC
Confidence 6799999999999999999999999999999997642211 1 111122221 123344444 89888865222211
Q ss_pred ----------HhhccHHHH-hcc-CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 233 ----------IQIINAECL-QHI-KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 233 ----------~~lI~~~~L-~~M-K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..++....| ..+ +...+-|--+.|+..-..-|...|+.
T Consensus 83 ~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 83 PMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred HHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 122333323 233 33456666667888777777777764
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.1 Score=55.59 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=31.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.|.+|.|+|.|.||...++.++..|++|++++++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 6889999999999999999999999999999874
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.13 Score=54.64 Aligned_cols=90 Identities=17% Similarity=0.201 Sum_probs=54.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceec-----CCHHHHhc---cCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM-----DTLNDLLA---ASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~-----~sL~eLL~---~ADVV~l~lPlT~~ 231 (632)
.|.+|.|+|.|.+|...++.++..|+ +|++.+++....+.....|+..+ .++.++.. ..|+|+-++... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 68999999999999999999999999 68888877543332122222111 12233222 256666665421 1
Q ss_pred hHhhccHHHHhccCCCcEEEEcCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
+ + ...+..+++|..+|.+|-
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEcc
Confidence 1 1 234555666666666654
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.16 Score=53.84 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=70.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----c---cc-ccCc-ee--c-CCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----V---TF-PSAA-RR--M-DTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~---~~-~~g~-~~--~-~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||.|.||.-+|-+|...|.+|..++|.....+ . .. ..+. .. . ..-.+.+...|+|++++=..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 4699999999999999999999999999998642111 0 00 0010 00 0 11122345789999998653
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEe
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCAL 278 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaL 278 (632)
++...+ +.....+.+++.+|-.--|= -.++.+.+.+-..++.++..
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~~ 127 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFASS 127 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEEe
Confidence 344443 34555677888888775552 33455667766555554433
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.12 Score=56.51 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=34.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
+..|.+++|.|||.|.+|..+|..|...|+ ++.++|+.
T Consensus 130 q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 130 QRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356899999999999999999999999998 79999986
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.14 Score=56.12 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=35.1
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
+..|.+.+|.|||+|.+|..+|..|...|+ ++.++|..
T Consensus 36 q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 36 QERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 467999999999999999999999999998 89999976
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.26 Score=52.66 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=56.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccc--CceecCCHHHHhccCCEEEEccCCCh
Q 006758 164 VLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPS--AARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
+|+|||.|.||..+|-.|...|. ++..+|....... ..+.. ...-...-.+.+++||+|+++.-...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~ 80 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence 58999999999999998876555 8999998653222 11110 11111233578899999999875421
Q ss_pred ---hh---Hhhc--cH-------HHHhccCCCcEEEEcCC
Q 006758 231 ---ET---IQII--NA-------ECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 231 ---~T---~~lI--~~-------~~L~~MK~GAvLINvgR 255 (632)
.| ..++ |. ..+..-.|.+++|.++-
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 23 2222 11 23344457888887653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.15 Score=50.04 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=29.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+|+|||.|.+|..+|..|...|+ ++.++|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999764
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.13 Score=56.74 Aligned_cols=39 Identities=5% Similarity=0.025 Sum_probs=34.8
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|++.+|.|||+|.+|..+|..|...|. ++.++|...
T Consensus 37 q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 37 QKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 356899999999999999999999999888 788998763
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.12 Score=58.15 Aligned_cols=92 Identities=11% Similarity=-0.053 Sum_probs=62.0
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cC-c--eecCCHHHHhccCCEEEEccCCChhhH
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SA-A--RRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g-~--~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+|.|++|.|||-|.+|..=++.|..+|++|.++.+........+. .+ . ..-.-..+.+..+++|+.++....
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~--- 84 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA--- 84 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence 5799999999999999999999999999999999886532211111 01 0 111112355678888877765422
Q ss_pred hhccHHHHhccCCCcEEEEcC
Q 006758 234 QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvg 254 (632)
+|.......+...++||++
T Consensus 85 --~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 --VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred --HhHHHHHHHHHcCcEEEEC
Confidence 5555556666666888864
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.33 Score=52.38 Aligned_cols=68 Identities=10% Similarity=0.190 Sum_probs=46.8
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhh--CCCEEEEECCCCCCCCcccc-------cCceec---CCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLS--FKMSVLYFDVPEGKGKVTFP-------SAARRM---DTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~Lka--fGm~V~~~dr~~~~~~~~~~-------~g~~~~---~sL~eLL~~ADVV~l~l 226 (632)
++.++|+|||. |.||..+|..|.. ..-++..+|....... ..+ ...... .+..+.+++||+|++++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~-a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGV-AADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccc-ccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 56779999999 9999999999884 4458999998432221 111 011112 12268899999999887
Q ss_pred CC
Q 006758 227 AV 228 (632)
Q Consensus 227 Pl 228 (632)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 65
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.095 Score=64.27 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=46.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhC-CCE-------------EEEECCCCCCCCc---ccccC---cee-cCCHHHH---h
Q 006758 161 RGLVLGIVGRSASARALATRSLSF-KMS-------------VLYFDVPEGKGKV---TFPSA---ARR-MDTLNDL---L 216 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lkaf-Gm~-------------V~~~dr~~~~~~~---~~~~g---~~~-~~sL~eL---L 216 (632)
+.++|+|||.|.||+.+|+.|... +++ |.+.|++....+. .++ + +.. +.+.+++ +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-NAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC-CCceEEeecCCHHHHHHhh
Confidence 467899999999999999999754 334 8888987643321 111 1 111 3344444 4
Q ss_pred ccCCEEEEccCC
Q 006758 217 AASDVISLHCAV 228 (632)
Q Consensus 217 ~~ADVV~l~lPl 228 (632)
..+|+|++++|.
T Consensus 647 ~~~DaVIsalP~ 658 (1042)
T PLN02819 647 SQVDVVISLLPA 658 (1042)
T ss_pred cCCCEEEECCCc
Confidence 689999999996
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.19 Score=58.24 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=52.2
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce--ecCC---HHHHhccCCEEEEccCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDT---LNDLLAASDVISLHCAVT 229 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~--~~~s---L~eLL~~ADVV~l~lPlT 229 (632)
+.....++|||||-|..|+.++..++.+|++|+++|+++......+..... .+.+ +.++...+|+|+......
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 345788999999999999999999999999999999876432211111111 1233 566778899997765543
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.24 Score=53.70 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=50.6
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|++|++||-+ ++..+++..+..||++|.++.|..-.....+ ..+ .....++++++++||||..-
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 689999999997 7889999999999999999998653221100 012 33457899999999999884
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.15 Score=57.50 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=69.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccc-cc--Cceec--CCHHHHhccCCEEEEc--cCCC--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTF-PS--AARRM--DTLNDLLAASDVISLH--CAVT-- 229 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~-~~--g~~~~--~sL~eLL~~ADVV~l~--lPlT-- 229 (632)
+.+++|+|+|+|.+|.++|+.|+..|.+|.++|....... ..+ .. ++... ....+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999997542211 011 11 22211 1123456689999996 4443
Q ss_pred ---hh-------hHhhccH-HHHhc-c--------CCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 230 ---DE-------TIQIINA-ECLQH-I--------KPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 230 ---~~-------T~~lI~~-~~L~~-M--------K~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
|. ...++.. +.+.. + ++-.+-|--+-|+.--..-|...|+....
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~ 148 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK 148 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 21 1122322 22211 2 22345666667887766667777775433
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.2 Score=43.94 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=35.3
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
-++.|++|.|||-|.+|..=++.|..+|++|.++++...
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 457899999999999999999999999999999998753
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.4 Score=52.35 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=49.6
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------ccc-CceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT-------FPS-AARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-------~~~-g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||= .++..+++..+..||++|.++.|..-..... ... ......++++.+++||||..-.
T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~ 267 (348)
T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDV 267 (348)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECC
Confidence 78999999997 3577788888889999999999865322110 111 2344688999999999998863
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.24 Score=49.28 Aligned_cols=37 Identities=11% Similarity=-0.064 Sum_probs=32.8
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||+.+++.|...|++|++++++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999996 8999999999999999999988764
|
|
| >KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.59 Score=53.68 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=106.6
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+.|+...+||...| |..+|..|+-...+|.++-... .+|.+.+.++|+|+.++-- .+++-
T Consensus 159 ~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT--------------~~lae~v~~ADIvIvAiG~----PefVK 220 (935)
T KOG4230|consen 159 FVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKT--------------RNLAEKVSRADIVIVAIGQ----PEFVK 220 (935)
T ss_pred ccccceeEEEecccccCChHHHHHHhcCceEEEecCCC--------------ccHHHHhccCCEEEEEcCC----cceee
Confidence 378999999999875 8999999999999999885432 4788999999999999864 34554
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC-CCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf-E~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~ 316 (632)
. .++|||+++|++|---+-|.. -++|.- +.=||- |+-.. ---.|||-=||.-.-...-+.+
T Consensus 221 g---dWiKpGavVIDvGINyvpD~~-----Kksg~k--lvGDVdfe~Ake--------vas~ITPVPGGVGPMTVAMLmq 282 (935)
T KOG4230|consen 221 G---DWIKPGAVVIDVGINYVPDPS-----KKSGFK--LVGDVDFESAKE--------VASFITPVPGGVGPMTVAMLMQ 282 (935)
T ss_pred c---ccccCCcEEEEccccccCCCC-----Ccccce--EeeecchHhhhh--------hhhccccCCCCcchHHHHHHHH
Confidence 4 458899999999976555432 122221 345663 32110 0124888867765544444444
Q ss_pred HHHHHHHHHHHcC----CCCCccccCCcCccCcCcchhhhhhhc
Q 006758 317 KAISVLQTFFFDG----VIPKNAISDTEGCENEIDDEIEQYNKL 356 (632)
Q Consensus 317 ~a~~nL~~fL~~G----~~p~nvVn~~~~~~~~~~~~~~~~~~~ 356 (632)
..++.-++++..- +++.+.++....-+|+++--..|.+|.
T Consensus 283 NtveaAKR~r~es~~~~~i~~~pl~l~tpvpsdidisrsq~pk~ 326 (935)
T KOG4230|consen 283 NTVEAAKRQREESKKKRKIDLLPLKLKTPVPSDIDISRSQEPKL 326 (935)
T ss_pred HHHHHHHHHHHhccccCcCCCCccccCCCCCcccchhhccCcch
Confidence 5555555554322 244566666667777766666666553
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.13 Score=57.47 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=70.6
Q ss_pred ccCcEEEEEeCChhhHH-HHHHHhhCCCEEEEECCCCCCCCccc-ccCceec-CCHHHHhccCCEEEEccCCChh---hH
Q 006758 160 CRGLVLGIVGRSASARA-LATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRM-DTLNDLLAASDVISLHCAVTDE---TI 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~-vA~~LkafGm~V~~~dr~~~~~~~~~-~~g~~~~-~sL~eLL~~ADVV~l~lPlT~~---T~ 233 (632)
..+++|.|||+|.+|.+ +|+.|+..|++|.++|.........+ ..++... ..-.+.+..+|+|+..--..+. ..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 57789999999999999 79999999999999997653211111 1122221 1223456689998875433222 11
Q ss_pred -------hhccHHHH-hcc-CC-CcEEEEcCCChhhcHHHHHHHHHcCC
Q 006758 234 -------QIINAECL-QHI-KP-GAFLVNTGSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 234 -------~lI~~~~L-~~M-K~-GAvLINvgRG~iVDe~AL~~AL~sg~ 272 (632)
.+++.-.| ..+ ++ -.+-|--+.|+.--..-+...|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 23444333 333 32 35666666798887777777777543
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.31 Score=52.28 Aligned_cols=93 Identities=15% Similarity=0.263 Sum_probs=59.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC-ccccc-----Cceec---CCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK-VTFPS-----AARRM---DTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~-~~~~~-----g~~~~---~sL~eLL~~ADVV~l~lPlT~ 230 (632)
.+|+|||. |.+|..+|-.|..-|+ ++..+|....... ..+.. ..... +++.+.+++||+|+++.-...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 37999999 9999999999886664 8999998721111 00111 11111 235688999999999875522
Q ss_pred ---hhH--------hhcc--HHHHhccCCCcEEEEcCC
Q 006758 231 ---ETI--------QIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 231 ---~T~--------~lI~--~~~L~~MK~GAvLINvgR 255 (632)
+|| .++. .+.+..-.|.+++||++-
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 121 1221 124444568899999876
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.2 Score=49.48 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=33.4
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+.|++|.|.|. |.||..+++.+...|++|++.+++..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 68899999997 77999999999999999999998753
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.19 Score=58.15 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=49.2
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----------------------cccCceecCCHHHHh
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT----------------------FPSAARRMDTLNDLL 216 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----------------------~~~g~~~~~sL~eLL 216 (632)
-.|++|.|.|. |.||+.+++.|...|++|.+++|+....... +...+...+++.+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 37889999996 9999999999999999999998875332100 000111123455668
Q ss_pred ccCCEEEEccCCC
Q 006758 217 AASDVISLHCAVT 229 (632)
Q Consensus 217 ~~ADVV~l~lPlT 229 (632)
..+|+||+++...
T Consensus 158 ggiDiVVn~AG~~ 170 (576)
T PLN03209 158 GNASVVICCIGAS 170 (576)
T ss_pred cCCCEEEEccccc
Confidence 8999999987543
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.73 Score=48.80 Aligned_cols=105 Identities=19% Similarity=0.235 Sum_probs=74.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhH--------
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI-------- 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~-------- 233 (632)
|++++|||--.=-..+++.|...|++|..|.-..... .+. ++......++.+.++|+|++-+|.+.+.-
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLED--GFT-GAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccc--ccc-cceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 6789999998888899999999999988886432111 122 44455566667999999999999776521
Q ss_pred --hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 234 --QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 234 --~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
-.++++.|+.|+++++ +-+|.+ ...|.++.++..|.
T Consensus 78 ~~~~l~~~~l~~~~~~~~-~~~G~~----~~~l~~~a~~~gi~ 115 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCT-IYVGIS----NPYLEQLAADAGVK 115 (287)
T ss_pred CCccccHHHHHhcCCCCE-EEEecC----CHHHHHHHHHCCCe
Confidence 1256889999998665 555543 34455466666665
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.43 Score=51.62 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=62.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC----------CCEEEEE-CCCCC----CC-Cc----c--cccC-------ceecCCHH
Q 006758 163 LVLGIVGRSASARALATRSLSF----------KMSVLYF-DVPEG----KG-KV----T--FPSA-------ARRMDTLN 213 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf----------Gm~V~~~-dr~~~----~~-~~----~--~~~g-------~~~~~sL~ 213 (632)
.+|||+|+|.||+.+++.+... +++|.++ |+... .. .. . ...+ .....+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3699999999999999998754 5676544 54311 00 00 0 0001 01124788
Q ss_pred HHhc--cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCc
Q 006758 214 DLLA--ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTL 273 (632)
Q Consensus 214 eLL~--~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i-VDe~AL~~AL~sg~I 273 (632)
+++. ..|+|+.++|....+...--.-....|+.|.-+|-..-+.+ ..-.+|.++.++..+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence 8884 67999999996544321111223455666666655433333 234567776666544
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.18 Score=55.45 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=56.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--cCc-------eecCCHH-HHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAA-------RRMDTLN-DLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--~g~-------~~~~sL~-eLL~~ADVV~l~lPlT 229 (632)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.++........ .+. .....|. .-+.++|.|+++++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 34688999999999999999999999999999987643221000 011 1112232 2356789888887754
Q ss_pred hhhHhhccHHHHhccCCCcEEEEc
Q 006758 230 DETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
. .+++-......+.+..+++-+
T Consensus 309 ~--~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 E--ANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred H--HHHHHHHHHHHhCCCeEEEEE
Confidence 3 234333344445444444433
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.56 Score=43.77 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=29.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+|.|||+|.+|..+|+.|...|+ ++.++|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 799999774
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.25 Score=49.33 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=34.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|++.+|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 14 q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 14 QNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 356899999999999999999999999998 588998764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.25 Score=57.68 Aligned_cols=120 Identities=17% Similarity=0.288 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEEC
Q 006758 114 RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFD 192 (632)
Q Consensus 114 na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~d 192 (632)
.....||.++-|=|-|+| |.-- +. .+...|++.+|.|||.|.+|..+|+.|.+.|+ ++.++|
T Consensus 307 dP~~la~~avdlnlkLmk--------------WRll-P~--l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD 369 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLMK--------------WRLH-PD--LQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVD 369 (664)
T ss_pred CHHHHHHHHHHHHHHHHh--------------hhcC-Ch--hhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEc
Confidence 456778877777665553 3211 00 12246899999999999999999999999998 688888
Q ss_pred CCCCC------------------CC----------cccccCc-----e-e-------c------------CCHHHHhccC
Q 006758 193 VPEGK------------------GK----------VTFPSAA-----R-R-------M------------DTLNDLLAAS 219 (632)
Q Consensus 193 r~~~~------------------~~----------~~~~~g~-----~-~-------~------------~sL~eLL~~A 219 (632)
...-. +. ......+ . . + ..+.+++.++
T Consensus 370 ~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~ 449 (664)
T TIGR01381 370 NGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDH 449 (664)
T ss_pred CCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhC
Confidence 54210 00 0000000 0 0 1 2366899999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
|+|+.++- +.++|-+++...... +..+||.+
T Consensus 450 DvV~d~tD-n~esR~L~n~~c~~~---~kplI~aA 480 (664)
T TIGR01381 450 DVVFLLLD-SREARWLPTVLCSRH---KKIAISAA 480 (664)
T ss_pred CEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEE
Confidence 99999875 577888887655543 45666654
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.36 Score=54.03 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=50.3
Q ss_pred ccCcEEEEEeCC---hhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-------ccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS---ASARALATRSLSF-KMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||-+ ++..+++..+..+ ||+|.++.|..-.....+ ...+....++++.+++||||....
T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999994 8899999888876 999999998653211111 112334689999999999998843
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.5 Score=50.88 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=60.9
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCC-------CEEEEECCCCCC--CC-cccc---------cCceecCCHHHHhccCCEEE
Q 006758 164 VLGIVGR-SASARALATRSLSFK-------MSVLYFDVPEGK--GK-VTFP---------SAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafG-------m~V~~~dr~~~~--~~-~~~~---------~g~~~~~sL~eLL~~ADVV~ 223 (632)
+|+|+|. |.+|..+|..|...+ .+|..+|+.... .. ...+ .......++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 5999999 999999999988644 489999985422 11 0010 01112356778899999999
Q ss_pred EccCCChh---hH-hhc--cH-------HHHhcc-CCCcEEEEcCCChhhcHHH
Q 006758 224 LHCAVTDE---TI-QII--NA-------ECLQHI-KPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 224 l~lPlT~~---T~-~lI--~~-------~~L~~M-K~GAvLINvgRG~iVDe~A 263 (632)
.+.-.... ++ .++ |. ..+... +|++++|.++ ..+|.-.
T Consensus 84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 135 (325)
T cd01336 84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANTNA 135 (325)
T ss_pred EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHHHH
Confidence 87654321 11 111 11 234444 5788999887 3454444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.51 Score=50.92 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=61.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC-c---------ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK-V---------TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~--~~-~---------~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|||. |.+|..+|-.|...|. ++..+|..... .. . .+.....-.....+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 47999998 9999999999886664 79999985421 11 0 0000111123556889999999
Q ss_pred EEccCCCh---hhHh--------hcc--HHHHhccCC-CcEEEEcCCChhhcHHH
Q 006758 223 SLHCAVTD---ETIQ--------IIN--AECLQHIKP-GAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 223 ~l~lPlT~---~T~~--------lI~--~~~L~~MK~-GAvLINvgRG~iVDe~A 263 (632)
+++.-... +|+. ++. ...+....| .+++|.++ ..+|.-.
T Consensus 84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 99875422 1221 221 123344444 89999986 5555544
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.39 Score=42.38 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=52.0
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCCE-EEEECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGRSASARALATRSL-SFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~~T~~lI~ 237 (632)
..++.|+|+|+.|++++.... ..|+. +.++|.++...-... .+..-+.+++++... .|+.++++|. +.....+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~-~~a~~~~~ 80 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPA-EAAQEVAD 80 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-H-HHHHHHHH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCH-HHHHHHHH
Confidence 457999999999999985444 44553 455666654332112 233444577777776 9999999995 33444444
Q ss_pred HHHHhccCCCcEEEEcC
Q 006758 238 AECLQHIKPGAFLVNTG 254 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvg 254 (632)
+-.-+.+| .++|.+
T Consensus 81 ~~~~~gIk---~i~nft 94 (96)
T PF02629_consen 81 ELVEAGIK---GIVNFT 94 (96)
T ss_dssp HHHHTT-S---EEEEES
T ss_pred HHHHcCCC---EEEEeC
Confidence 33333333 445543
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.67 Score=49.96 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=62.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCC--CCCC-cc--ccc-------CceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPE--GKGK-VT--FPS-------AARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~--~~~~-~~--~~~-------g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|+|. |.||..+|..|..-|+ ++..+|... ...+ .. ... ...-.....+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 37999999 9999999998875443 599999875 2221 00 000 111114667899999999
Q ss_pred EEccCCCh---hh--------Hhhcc--HHHHhcc-CCCcEEEEcCCChhhcHHHHH
Q 006758 223 SLHCAVTD---ET--------IQIIN--AECLQHI-KPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 223 ~l~lPlT~---~T--------~~lI~--~~~L~~M-K~GAvLINvgRG~iVDe~AL~ 265 (632)
+++.-... +| ..++. ...+... +|.+++|.++ ..+|.-+.+
T Consensus 81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 98765422 12 11221 1244445 5888888885 566655544
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.61 Score=48.77 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=44.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCC-C-CCc--cc----ccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEG-K-GKV--TF----PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka-fGm~V~~-~dr~~~-~-~~~--~~----~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+|+|+| +|.||+.+++.+.. -++++.+ +|+... . ... .. ..++..+.+++++...+|+|+.+.|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence 3799999 79999999999885 5888666 564321 1 100 00 1234445788888667899999885
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.16 Score=54.46 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=44.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--eecCC---HHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDT---LNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~~~~s---L~eLL~~ADVV~l~ 225 (632)
||||||-|..|+.++..++.+|++|+++|+++......+.... ..+.+ +.+++..||+|...
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5999999999999999999999999999987643321111111 11233 67788889988543
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.17 Score=52.18 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=31.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~ 195 (632)
.|.+|.|+|.|.||..+++.++.+|++ |++.+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 688999999999999999999999997 88887654
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.62 Score=50.22 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=60.5
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC-cccc---------cCceecCCHHHHhccCCEEE
Q 006758 164 VLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK-VTFP---------SAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~--~~-~~~~---------~g~~~~~sL~eLL~~ADVV~ 223 (632)
+|+|||. |.+|..+|..|...|+ ++..+|..... .. ...+ .......+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999886554 59999985432 11 0000 01111125568899999999
Q ss_pred EccCCChh---hH-hh-------cc--HHHHhcc-CCCcEEEEcCCChhhcHHH
Q 006758 224 LHCAVTDE---TI-QI-------IN--AECLQHI-KPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 224 l~lPlT~~---T~-~l-------I~--~~~L~~M-K~GAvLINvgRG~iVDe~A 263 (632)
++.-.... |+ .+ +. ...+... +|.+++|+++ ..+|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 87654221 11 11 11 1234445 5788999887 5565555
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.47 Score=51.42 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=50.1
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc-------c--ccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT-------F--PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-------~--~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|++|+|||-+ ++..+++..+..||++|.+..|..-..... + ..| .....++++.+++||||..-
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 689999999975 888999999999999999999864221100 0 112 33467899999999999884
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.14 Score=52.17 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=35.2
Q ss_pred cccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 157 MRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|.++.++++.|.|. |.||..+|+.|...|++|++.+++.
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999999998 7999999999999999999999875
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.48 Score=52.80 Aligned_cols=107 Identities=9% Similarity=0.076 Sum_probs=61.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC----------CCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSF----------KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf----------Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT 229 (632)
.+|||||+|.||+.+++.+... +++|. +++++..........+.....++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999999887432 45644 4466543322111112334578999996 469999998753
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~iV-De~AL~~AL~sg~I 273 (632)
.-...+ ....|+.|.-+|-.-=+-+. .-.+|.++.++...
T Consensus 84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv 124 (426)
T PRK06349 84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV 124 (426)
T ss_pred hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence 222222 22445556555432112222 23557776666554
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.37 Score=51.45 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=49.6
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc----c----------cccCceecCCHHHHhccCCEEE
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV----T----------FPSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~----~----------~~~g~~~~~sL~eLL~~ADVV~ 223 (632)
.+++++|.|.|. |-||+.+++.|...|.+|.+..+....... . .........++.+++..+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 467899999997 999999999999999999999876432100 0 0011112335677888899888
Q ss_pred EccCC
Q 006758 224 LHCAV 228 (632)
Q Consensus 224 l~lPl 228 (632)
.+...
T Consensus 87 h~A~~ 91 (342)
T PLN02214 87 HTASP 91 (342)
T ss_pred EecCC
Confidence 77643
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.42 Score=48.50 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=33.8
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+++|+++.|.|. |.||..+|+.|...|++|++.+++..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 478999999995 68999999999999999999998754
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.17 Score=60.12 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=66.8
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----c---ccccC-------------------c--
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----V---TFPSA-------------------A-- 206 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~----~---~~~~g-------------------~-- 206 (632)
...|++++|+|||+| +|..+|..|...|. ++..+|...-... . ....| +
T Consensus 102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 356999999999999 99999999998884 8888886531110 0 00000 0
Q ss_pred ----eecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhc
Q 006758 207 ----RRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260 (632)
Q Consensus 207 ----~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVD 260 (632)
....++++++..+|+|+-|+-. -+++.+|+......-+ .+|.-.+-++.+|
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~D~-~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEECDS-LDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 1123678899999999999874 6889999887666432 2333343334443
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.43 Score=56.97 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=115.0
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHh
Q 006758 103 LGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (632)
Q Consensus 103 rGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (632)
..|+++|.+--. +|=-+++.+|+.+|-. .+.|.+.+|.|.|.|.-|..+|+.+.
T Consensus 156 ~~ipvf~DD~qG---Ta~v~lA~llnal~~~-----------------------gk~l~d~~iv~~GAGaAg~~ia~~l~ 209 (764)
T PRK12861 156 MKIPVFHDDQHG---TAITVSAAFINGLKVV-----------------------GKSIKEVKVVTSGAGAAALACLDLLV 209 (764)
T ss_pred CCCCeeccccch---HHHHHHHHHHHHHHHh-----------------------CCChhHcEEEEECHhHHHHHHHHHHH
Confidence 379999985433 3444677777777521 13478899999999999999999999
Q ss_pred hCCC---EEEEECCCC-----CCC-----CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcE
Q 006758 183 SFKM---SVLYFDVPE-----GKG-----KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 183 afGm---~V~~~dr~~-----~~~-----~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
..|+ +++.+|+.. ... +..+... ....+|.|++..+|+++=.- +-++|+++.++.|.+.++
T Consensus 210 ~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~-~~~~~L~eai~~advliG~S-----~~g~ft~e~v~~Ma~~PI 283 (764)
T PRK12861 210 DLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE-TDARTLAEVIGGADVFLGLS-----AGGVLKAEMLKAMAARPL 283 (764)
T ss_pred HcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh-cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHHHHhccCCE
Confidence 9999 799999653 111 0111111 12358999999999886542 248999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHc-CC-cceEEeecCCCCCCCCccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHHH
Q 006758 250 LVNTGSSQLLDDCAVKQLLID-GT-LAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVL 322 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~s-g~-I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~nL 322 (632)
+.=.+.-.. |.-=.+|.+. |. |.+- -....++ ...|+++=|-++-..- ..-++|...+++-|
T Consensus 284 IFaLsNPtp--E~~pe~a~~~~g~aivaT-----Grs~~pn----Q~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~al 352 (764)
T PRK12861 284 ILALANPTP--EIFPELAHATRDDVVIAT-----GRSDYPN----QVNNVLCFPYIFRGALDVGATTITREMEIAAVHAI 352 (764)
T ss_pred EEECCCCCc--cCCHHHHHhcCCCEEEEe-----CCcCCCC----ccceeeecchhhHHHHHcCCccCCHHHHHHHHHHH
Confidence 999988664 2111222233 33 3321 1111111 4568999897543221 12355555556666
Q ss_pred HHH
Q 006758 323 QTF 325 (632)
Q Consensus 323 ~~f 325 (632)
..+
T Consensus 353 A~~ 355 (764)
T PRK12861 353 AGL 355 (764)
T ss_pred Hhh
Confidence 554
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.39 Score=51.03 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=35.6
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|...+|.|+|+|.+|..+|+.|...|. +|..+|...
T Consensus 14 q~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 14 MKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 467899999999999999999999999998 699999775
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.16 Score=50.38 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=33.6
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+.++++.|+|. |.||..+++.|...|++|++++|+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999996 89999999999999999999998863
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.16 Score=57.12 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=69.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-cccCceecC--CHHHHhccCCEEEEcc--CCC-hhh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARRMD--TLNDLLAASDVISLHC--AVT-DET 232 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-~~~g~~~~~--sL~eLL~~ADVV~l~l--PlT-~~T 232 (632)
.+.+++|.|+|+|.+|.++|+.|...|+.|.++|+........ ...++.... ...+.+.++|+|+..- |.+ |..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 4688999999999999999999999999999999764322111 112332221 2234466889888763 322 221
Q ss_pred -------HhhccHHHHhc-------c--CCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 233 -------IQIINAECLQH-------I--KPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 233 -------~~lI~~~~L~~-------M--K~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
..+++.-.+.. + +...+-|--+-|+..-..-|...|+..
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 11233333321 1 223455666678888777777778753
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.9 Score=49.09 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=61.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCC--CC-c---------ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGK--GK-V---------TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~--~~-~---------~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|||. |.+|..+|-.|...|+ ++..+|..... .. . .+.....-.....+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998765333 79999985421 11 0 0001111124566889999999
Q ss_pred EEccCCCh---hhH--------hhcc--HHHHhc-cCCCcEEEEcCCChhhcHHHHH
Q 006758 223 SLHCAVTD---ETI--------QIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 223 ~l~lPlT~---~T~--------~lI~--~~~L~~-MK~GAvLINvgRG~iVDe~AL~ 265 (632)
+++.-... +|+ .++. ...+.. -++.+++|.++ ..+|.-..+
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v 139 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALI 139 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHH
Confidence 99775321 121 1221 112333 34689999998 566655533
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.13 Score=59.73 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=62.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
..+|.|+|+|++|+.+|+.|...|.++++.|.++...+.....+. ...+.|+++ +.+||+|+++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 357999999999999999999999999999988654331111121 111223332 678999999999876665
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
.++ .....+.|...+|=-+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 553 34555666666665544
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=92.71 E-value=1 Score=48.16 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=59.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCC--CCCC-cc---------cccC--ceecCCHHHHhccCCEEEEc
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPE--GKGK-VT---------FPSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~--~~~~-~~---------~~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
++|+|+|. |.+|..+|..|...|. +|+.+|+.. .... .. .... .....+. +.+.+||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999998 9999999999987776 599999854 1111 00 0001 1112244 459999999999
Q ss_pred cCCChh---hH--------hhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 226 CAVTDE---TI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 226 lPlT~~---T~--------~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
...... ++ .++. ...+....+.+++|+++ ..+|.-.
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t 128 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMT 128 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHH
Confidence 864221 21 1221 12344455677888876 4455444
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.38 Score=50.60 Aligned_cols=65 Identities=14% Similarity=0.057 Sum_probs=45.9
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC-------ceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g-------~~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|.|+| .|.||+.+++.|...|++|.++.|+..........+ .....++.+++..+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 3688999 699999999999999999999988753211000111 1123456788999999987653
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.21 Score=56.13 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=69.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccccCcee--cCCHHHHhccCCEEEEccCCChh---
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSAARR--MDTLNDLLAASDVISLHCAVTDE--- 231 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~g~~~--~~sL~eLL~~ADVV~l~lPlT~~--- 231 (632)
+.|++|+|+|+|..|.++|+.|...|++|+++|........ .+..+... .....+.+..+|+|+..--..+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 46899999999999999999999999999999965322111 11111111 11123556789999885433222
Q ss_pred h-------HhhccHHHH--hc-cC-----CCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 T-------IQIINAECL--QH-IK-----PGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 T-------~~lI~~~~L--~~-MK-----~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
. ..++++-.| .. ++ ...+-|--+.|+.--..-|...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 123544443 33 31 2356666667888777777777764
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.15 Score=53.64 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=47.7
Q ss_pred cEEEEEeCChhhH-HHHHHHhhCC--C-EEEEECCCCCCCCcc-cccCc-eecCCHHHHhcc--CCEEEEccCCChh
Q 006758 163 LVLGIVGRSASAR-ALATRSLSFK--M-SVLYFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~LkafG--m-~V~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--ADVV~l~lPlT~~ 231 (632)
.+|||||+|.|++ ..+..++..+ + -|.++|++....+.. ...+. ..+.+++++|+. .|+|+++.|..-.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 5799999997775 5777787775 3 466668887543211 11122 357899999997 4899999996443
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.2 Score=53.67 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=68.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------------cccccCce-----------ecCCHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------------VTFPSAAR-----------RMDTLND 214 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------------~~~~~g~~-----------~~~sL~e 214 (632)
...+.++-++|+|-+|-..+......|+-|..+|-.....+ .+...+.+ ...-+.+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999986542111 00011111 1122456
Q ss_pred HhccCCEEEEc--cCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 215 LLAASDVISLH--CAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 215 LL~~ADVV~l~--lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..++.||||.. +|..|.- -++.++..+.||||.++|+.+
T Consensus 241 ~~~~~DivITTAlIPGrpAP-~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGRPAP-KLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCCCCc-hhhHHHHHHhcCCCcEEEEeh
Confidence 78899999985 5665553 578899999999999999975
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.22 Score=52.24 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=50.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.|.++.|+|.|.||...++.++.+|++ |.++++.....+....... .+.-++.-...|+|+-+..... .+ ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~----~~-~~ 216 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPS----LI-DT 216 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHH----HH-HH
Confidence 477899999999999999999999997 5556655432211111011 1111111124577776655311 11 24
Q ss_pred HHhccCCCcEEEEcC
Q 006758 240 CLQHIKPGAFLVNTG 254 (632)
Q Consensus 240 ~L~~MK~GAvLINvg 254 (632)
.+..|+++..++.+|
T Consensus 217 ~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308)
T ss_pred HHHhhhcCcEEEEEe
Confidence 556677777777665
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.19 Score=56.16 Aligned_cols=67 Identities=7% Similarity=0.100 Sum_probs=45.3
Q ss_pred cEEEEEeCChhhHHHHH--HH---hhC-CCEEEEECCCCCCCC----------ccc--ccCceecCCHHHHhccCCEEEE
Q 006758 163 LVLGIVGRSASARALAT--RS---LSF-KMSVLYFDVPEGKGK----------VTF--PSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~--~L---kaf-Gm~V~~~dr~~~~~~----------~~~--~~g~~~~~sL~eLL~~ADVV~l 224 (632)
.+|+|||.|.+|...+- .+ .++ |.+|+.||......+ ... ...+....++.+.+++||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 47999999999966544 22 334 569999998764322 001 1122335678899999999999
Q ss_pred ccCCC
Q 006758 225 HCAVT 229 (632)
Q Consensus 225 ~lPlT 229 (632)
++-..
T Consensus 82 ti~vg 86 (431)
T PRK15076 82 AIQVG 86 (431)
T ss_pred eeeeC
Confidence 88763
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.37 Score=51.28 Aligned_cols=95 Identities=11% Similarity=0.178 Sum_probs=59.4
Q ss_pred EEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------c-ccccCceecCCHHHHhccCCEEEEccCCChh---
Q 006758 167 IVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------V-TFPSAARRMDTLNDLLAASDVISLHCAVTDE--- 231 (632)
Q Consensus 167 IIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~--- 231 (632)
|||.|.||..+|..|...+. ++..+|....... . ...........-.+.+++||+|+++.-....
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 69999999999999886665 7999998654222 0 0001111122345789999999997654211
Q ss_pred --------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 232 --------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 232 --------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
+..++. ...+....|.+++|+++ ..+|.-.
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t 120 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT--NPVDILT 120 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CHHHHHH
Confidence 222221 23445567899999987 3444333
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.31 Score=48.25 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|+|.|.+|+.+++.++..|.+|++.+++.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 68899999999999999999999999999998874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.23 Score=58.67 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=33.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
...|++++|+|||+|.+|..+|..|...|. ++.++|..
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 356899999999999999999999999888 78888865
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.18 Score=57.79 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=58.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHH-HhccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLND-LLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~e-LL~~ADVV~l~lPlT~~T~~ 234 (632)
.++-|+|+|++|+.+|+.|+..|.+|+++|.++...+.....+. ...+.|++ -+.++|.|+++++...++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 56889999999999999999999999999988654331111111 11112222 25688999999998776655
Q ss_pred hccHHHHhccCCCcEEEE
Q 006758 235 IINAECLQHIKPGAFLVN 252 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLIN 252 (632)
++-. ...+.+...+|=
T Consensus 498 iv~~--~~~~~~~~~iia 513 (558)
T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558)
T ss_pred HHHH--HHHHCCCCeEEE
Confidence 5432 233445555553
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.17 Score=53.26 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=43.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceecCCHH-HH-hccCCEEEEccCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRMDTLN-DL-LAASDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~~sL~-eL-L~~ADVV~l~lPl 228 (632)
++++.|+|.|..|++++..|...|+ +|.+++|+....+..... .. .++. ++ ...+|+||.+.|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~-~~--~~~~~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL-YG--YEWRPDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-hC--CcchhhcccccCCEEEECCcc
Confidence 4689999999999999999999998 599999986433211000 00 1111 11 2457888888885
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.42 Score=51.93 Aligned_cols=66 Identities=8% Similarity=0.047 Sum_probs=50.4
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccCceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|++||-+ ++..+++..+..||++|.++.|..-..... ....+....++++.++++|||..-
T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 689999999976 689999999999999999999865221110 011233468899999999999885
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.17 Score=59.04 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=60.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--e-----ecCCHHH-HhccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--R-----RMDTLND-LLAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~-----~~~sL~e-LL~~ADVV~l~lPlT~~T~ 233 (632)
..+|-|+|+|++|+.+|+.|...|.++++.|.++...+.....+. . ..+.|++ =+.++|.|+++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 467999999999999999999999999999988654331111111 1 1122222 2568999999998766655
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
.++ ...+.+.|...+|--++
T Consensus 480 ~i~--~~ar~~~p~~~iiaRa~ 499 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIARAR 499 (621)
T ss_pred HHH--HHHHHhCCCCeEEEEEC
Confidence 443 34455556655554333
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.35 Score=54.24 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=65.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--ccccCceecCCHHHHhccCCEEEEccCCChh---h--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--TFPSAARRMDTLNDLLAASDVISLHCAVTDE---T-- 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~--~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~---T-- 232 (632)
-.|++|+|+|+|..|.++|+.|+. |++|.++|........ .............+.+.++|+|+..=-..+. .
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~ 82 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKI 82 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence 368899999999999999999996 9999999954322110 0000000111123456789998885422221 1
Q ss_pred -----HhhccHHHH--hccCC-CcEEEEcCCChhhcHHHHHHHHHc
Q 006758 233 -----IQIINAECL--QHIKP-GAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 233 -----~~lI~~~~L--~~MK~-GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..++++-.| ..++. -.+-|--+.|+..-..-|...|+.
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123433333 33332 245555567888877777777775
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.21 Score=53.91 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=43.3
Q ss_pred EEEEEeCChhhHH-HHHHHhh--CCCEEE-EECCCCCCCCccccc-CceecCCHHHHhc--cCCEEEEccCCCh
Q 006758 164 VLGIVGRSASARA-LATRSLS--FKMSVL-YFDVPEGKGKVTFPS-AARRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 164 tVGIIGlG~IG~~-vA~~Lka--fGm~V~-~~dr~~~~~~~~~~~-g~~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
+|||||+|.|++. .+..+.. -+++|. ++|++.......... ....+.+++++|. +.|+|++++|...
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 6999999998864 3443432 367775 578765322111111 2345678999996 5799999999644
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.1 Score=50.62 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=66.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-------CC--EEEEECCCCCCCC-------c---ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSF-------KM--SVLYFDVPEGKGK-------V---TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-------Gm--~V~~~dr~~~~~~-------~---~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|||. |.||..+|-.|..- |. +++.+|......+ . .+...+.....-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 57999999 99999999988754 44 7899998765433 0 0111122123456889999999
Q ss_pred EEccCCChh-----------hHhhcc--HHHHhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 223 SLHCAVTDE-----------TIQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 223 ~l~lPlT~~-----------T~~lI~--~~~L~~-MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+++.-.... +..++. ...+.. -.+.+++|.++ ..+|.-+.+-.-.+
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s 240 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA 240 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence 998754221 122221 124444 47789999887 56666665544333
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.61 Score=47.92 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=46.8
Q ss_pred EEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc----ccccCceecCCHHHHh------cc-CCEEEEccCCCh
Q 006758 164 VLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRMDTLNDLL------AA-SDVISLHCAVTD 230 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~----~~~~g~~~~~sL~eLL------~~-ADVV~l~lPlT~ 230 (632)
+|.|+|. |.||+.+++.|..-|.+|.+..|+...... .........++|.+++ .. +|.|+++.|...
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~ 79 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIP 79 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCC
Confidence 3678887 999999999999999999999988643221 0111122234566667 45 899998888643
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.83 E-value=2.5 Score=45.27 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=81.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------CCCccc-ccC----ceecCCHHHHhccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------KGKVTF-PSA----ARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~------~~~~~~-~~g----~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++|.|+|.|.||.-+|-+|...|..|+.+.|... .+.... ..+ ......-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 4799999999999999999999988888887763 110000 011 111223346667999999998643 3
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCCCcc
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYS 307 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiAg~T 307 (632)
|..++ +.....+++.++++=+--| +=.++.+.+.+...+|. .++..+.. ..+..--......+.+.+..++..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 44444 4566777888776644333 22234666666655454 23443321 111111122345666777666554
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.4 Score=49.92 Aligned_cols=37 Identities=24% Similarity=0.139 Sum_probs=32.2
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
..+.|+++.|.|. |.||+.+|+.|...|++|++..+.
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 3578999999996 889999999999999999887654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.29 Score=51.91 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=56.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH-HHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL-NDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL-~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.|.+|.|.|.|.+|...++.++.+|++|++.+++....+.....|+..+.+. ++.-...|+++.+.... . .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 5889999999999999999999999999998877544332222333221111 11112356666554431 1 12 34
Q ss_pred HHhccCCCcEEEEcCC
Q 006758 240 CLQHIKPGAFLVNTGS 255 (632)
Q Consensus 240 ~L~~MK~GAvLINvgR 255 (632)
.++.+++|..++.+|-
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 6667777777777664
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.36 Score=51.72 Aligned_cols=157 Identities=9% Similarity=0.088 Sum_probs=84.3
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCC--CcccccCcee-cCCHHHHhc-----cCCEEEEccCCChh
Q 006758 162 GLVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKG--KVTFPSAARR-MDTLNDLLA-----ASDVISLHCAVTDE 231 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~--~~~~~~g~~~-~~sL~eLL~-----~ADVV~l~lPlT~~ 231 (632)
..+|||||.|.||+..+..+... ++++.+ +|++.... ......+... +.++++++. +.|+|+.+.|...
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~- 82 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA- 82 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH-
Confidence 46799999999999977776643 677654 56654321 1112234433 468899985 5889999988522
Q ss_pred hHhhccHHHHhccCCCcEEEEcC---CChh----hcHHHHHHHHHcCCcceEEeecCCCCCC-CCcccc--CCCcEEE--
Q 006758 232 TIQIINAECLQHIKPGAFLVNTG---SSQL----LDDCAVKQLLIDGTLAGCALDGAEGPQW-MEAWVR--EMPNVLI-- 299 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvg---RG~i----VDe~AL~~AL~sg~I~GAaLDVfE~P~~-~~~pL~--~~pNVIi-- 299 (632)
|. +-.....+.|..+|+-. +|.+ |+.+++.++ ..-++..+.--.+- |.. .-+++- ..-.|+-
T Consensus 83 --H~--e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~-~~~~iia~p~~ati-~~v~Al~~v~~~~~~eIvat~ 156 (302)
T PRK08300 83 --HV--RHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDA-PNVNMVTCGGQATI-PIVAAVSRVAPVHYAEIVASI 156 (302)
T ss_pred --HH--HHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcc-cCCCEEECccHHHH-HHHHHhcccCcCceeeeeeee
Confidence 21 22233356788888876 4444 333433221 11122111111110 100 000111 2334442
Q ss_pred cCC-CCCccHHHHHHHHHHHHHHHHHH
Q 006758 300 LPR-SADYSEEVWMEIRDKAISVLQTF 325 (632)
Q Consensus 300 TPH-iAg~T~ea~~~~~~~a~~nL~~f 325 (632)
.-- .+..|....+++.+....-|+.|
T Consensus 157 ~s~s~g~gtr~nidE~~~~t~~~~~~~ 183 (302)
T PRK08300 157 ASKSAGPGTRANIDEFTETTSRAIEKV 183 (302)
T ss_pred hhhccCCcccccHHHHHHHHHHHHHHh
Confidence 112 35566778888888888888775
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.69 Score=50.32 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=48.4
Q ss_pred cccCcEEEEEeC---ChhhHHHHHHHh-hCCCEEEEECCCCCCCCccc-------ccCceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGR---SASARALATRSL-SFKMSVLYFDVPEGKGKVTF-------PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~~-------~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+.|++|++||= +++..+++..+. .+|++|.++.|..-.....+ ........++++.+++||||..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 378999999998 477888887766 45999999998653211111 11233457999999999999884
|
|
| >cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.59 Score=42.24 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=57.2
Q ss_pred eEEEEEEecCCceEEeeecccccceEEeecccccCCCccceEEE-eecCccccccccccCCceeeecccceEEEeecccc
Q 006758 507 YVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLI-CKSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFD 585 (632)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (632)
-.|+|++ ..|.||+.+. .|.- +.+.+ .+|..+|-+ +.+..++=|||- .||.|.+++.=-+....|+-+
T Consensus 44 g~v~Lrs--~~G~yls~~~--~g~l----~~~~~-~~~~e~F~~e~~~~g~~al~~~--~G~yl~~~~~g~l~~~~~~~~ 112 (119)
T cd00257 44 GKYALRS--HDGKYLSADS--DGGV----QLEGH-PNADCRFTLEFHGDGKWALRAE--NGRYLGGDGSGTLKASSETVG 112 (119)
T ss_pred CeEEEEE--CCCcEEEEEC--CCCE----EecCC-CCCCcEEEEEECCCCeEEEEcC--CCCEEeecCCCeEEEecCCCC
Confidence 3568886 6999999863 4432 44556 789999999 888789999965 999999987555555566679
Q ss_pred cccccee
Q 006758 586 AWESWAI 592 (632)
Q Consensus 586 ~~~~~~~ 592 (632)
-||.|.+
T Consensus 113 ~~e~f~~ 119 (119)
T cd00257 113 PDELFEL 119 (119)
T ss_pred ccceecC
Confidence 9999874
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.51 Score=50.20 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=32.8
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
++|++|.|.|. |-||..+++.|...|.+|+++++...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 46889999995 99999999999999999999987653
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.59 Score=50.67 Aligned_cols=67 Identities=16% Similarity=0.033 Sum_probs=45.5
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--c-----cCceecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF--P-----SAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--~-----~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+++|.|.|. |-||+.+++.|...|.+|.++++......... . ........+..++..+|+|+-+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 5788999997 99999999999999999999997542111000 0 011111234456678899886654
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.4 Score=46.28 Aligned_cols=159 Identities=12% Similarity=0.108 Sum_probs=101.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-----------EEEEECCCCC----CCC-----cc---cccCceecCCHHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-----------SVLYFDVPEG----KGK-----VT---FPSAARRMDTLNDL 215 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-----------~V~~~dr~~~----~~~-----~~---~~~g~~~~~sL~eL 215 (632)
+|.+.+|.|+|.|..|..+|+.+...++ +++.+|+..- ... .. +........+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254)
T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHH
Confidence 4789999999999999999999987766 6899998731 100 11 11111234689999
Q ss_pred hc--cCCEEEEccCCChhhHhhccHHHHhccC---CCcEEEEcCCChhhcHHHHHHHHHc--CC-cceEEeecCCCCCCC
Q 006758 216 LA--ASDVISLHCAVTDETIQIINAECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLID--GT-LAGCALDGAEGPQWM 287 (632)
Q Consensus 216 L~--~ADVV~l~lPlT~~T~~lI~~~~L~~MK---~GAvLINvgRG~iVDe~AL~~AL~s--g~-I~GAaLDVfE~P~~~ 287 (632)
+. +.|+++=..- .-++|.++.++.|. +..+|.=.+.-..-.|+--.+|++- |+ |.+.+ .|.++
T Consensus 102 v~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtG-----spf~p 172 (254)
T cd00762 102 VEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASG-----SPFHP 172 (254)
T ss_pred HHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEEC-----CCCCC
Confidence 99 9999976532 24899999999999 9999999998766444444444443 32 32211 12111
Q ss_pred C---c---cccCCCcEEEcCCCCCccHH-----HHHHHHHHHHHHHHHHH
Q 006758 288 E---A---WVREMPNVLILPRSADYSEE-----VWMEIRDKAISVLQTFF 326 (632)
Q Consensus 288 ~---~---pL~~~pNVIiTPHiAg~T~e-----a~~~~~~~a~~nL~~fL 326 (632)
. - ..-...|+++=|=++-.... .-++|...+++-|..+.
T Consensus 173 v~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v 222 (254)
T cd00762 173 VELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSV 222 (254)
T ss_pred cccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhC
Confidence 1 0 11246789988875433221 23556666666666653
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.53 Score=51.11 Aligned_cols=89 Identities=12% Similarity=0.239 Sum_probs=57.0
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh--C-CCEEEEECCCCCCCCcc-cccCceecCCHHHH-hccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGR-SASARALATRSLS--F-KMSVLYFDVPEGKGKVT-FPSAARRMDTLNDL-LAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka--f-Gm~V~~~dr~~~~~~~~-~~~g~~~~~sL~eL-L~~ADVV~l~lPlT~~T~~ 234 (632)
++.+|+|||. |-+|+.+.+.|.. | ..++..+......++.. +......+.++++. +.++|+|++++|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~----- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE----- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-----
Confidence 4678999998 9999999999987 5 45777665443333311 11111222345554 37899999999953
Q ss_pred hccHHHHhcc-CCCcEEEEcCC
Q 006758 235 IINAECLQHI-KPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~M-K~GAvLINvgR 255 (632)
+..+....+ +.|+.+|+.+.
T Consensus 78 -~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 78 -ASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred -HHHHHHHHHHHCCCEEEECCh
Confidence 223333333 56999999984
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.72 Score=49.66 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=56.9
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---ccc----------------------ccC--ce----ecCC
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTF----------------------PSA--AR----RMDT 211 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~----------------------~~g--~~----~~~s 211 (632)
+|.|||.|.+|..+++.|...|. ++.++|...-... ..+ ... +. ...+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 48999999999999999998888 7888886542111 000 000 00 1111
Q ss_pred ---HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 212 ---LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 212 ---L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
..+++.+.|+|+.++- +.+++..++.-.... +.-+|..+.
T Consensus 81 ~~~~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~---~ip~I~~gt 123 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALD-NLAARRHVNKMCLAA---DVPLIESGT 123 (312)
T ss_pred ccchHHHHhcCCEEEECCC-CHHHHHHHHHHHHHC---CCCEEEEec
Confidence 2367888898888874 566777777665543 345677654
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.33 Score=50.99 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=32.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||..+++.++.+|++ |++.+++..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~ 199 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE 199 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 489999999999999999999999999 998887643
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.41 Score=52.87 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=66.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecC--CHHHHhccCCEEEEccCCChhhH---
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMD--TLNDLLAASDVISLHCAVTDETI--- 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~--sL~eLL~~ADVV~l~lPlT~~T~--- 233 (632)
+.+++|.|||+|.+|.+.++.|+..|.+|.++|....... ..+..++.... .-.+.+...|+|+..--..+...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 83 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLS 83 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHH
Confidence 5688999999999999999999999999999997543221 11222322211 12244567887666432222211
Q ss_pred -------hhccH-HHHhcc-CCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 -------QIINA-ECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 -------~lI~~-~~L~~M-K~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.++.. +.+..+ +.-.+-|--+.|+.--..-|...|..
T Consensus 84 ~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 84 AAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12232 333332 32345566667888766667777764
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.57 Score=51.03 Aligned_cols=108 Identities=7% Similarity=-0.043 Sum_probs=67.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEE-ECCCCCCCCc-ccccCceecCCHHHHhccCCEEEEccCCC-hhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMSVLY-FDVPEGKGKV-TFPSAARRMDTLNDLLAASDVISLHCAVT-DETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~-~dr~~~~~~~-~~~~g~~~~~sL~eLL~~ADVV~l~lPlT-~~T~~lI~ 237 (632)
.+|||||. .+|+.-++.++.. ++++.+ +|+.....+. ....++..+.++++++.+.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 57999999 6899888888765 477655 5776543321 11123445789999999999999999853 322222
Q ss_pred HHHHhccCCC-cEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPG-AFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~G-AvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+-..+.|+.| .+|+.-==. .-+.++|+++.++..+.
T Consensus 81 e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~ 117 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR 117 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCE
Confidence 2233344455 344442222 34556688877776665
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.93 Score=49.04 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=60.7
Q ss_pred EEEEEeCChhhHHHHHHHhh--------CCCEEEEE-CCCCCCCC-ccc---------ccC---ceecC--CHHHHh-cc
Q 006758 164 VLGIVGRSASARALATRSLS--------FKMSVLYF-DVPEGKGK-VTF---------PSA---ARRMD--TLNDLL-AA 218 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lka--------fGm~V~~~-dr~~~~~~-~~~---------~~g---~~~~~--sL~eLL-~~ 218 (632)
+|+|+|+|+||+.+++.|.. ++++|.++ |++..... ..+ ..+ ..... ++++++ ..
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 69999999999999999865 56776655 44321000 000 000 01112 455553 46
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCc
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTL 273 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iV-De~AL~~AL~sg~I 273 (632)
+|||+=|.|....-.... .-....|+.|.-+|-..-|.+. .-..|.++.+++..
T Consensus 82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~ 136 (326)
T PRK06392 82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR 136 (326)
T ss_pred CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence 799998887532100011 2234556677777766666654 34556666555543
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.38 Score=53.81 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=68.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccc-ccCceec--CCHHHHhccCCEEEEccCCChh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTF-PSAARRM--DTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~-~~g~~~~--~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
.+.+++|.|||.|.+|.++|..|+..|++|.++|....... ..+ ..++... ... ++...+|+|++..-..+.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWRPD 91 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcCCC
Confidence 46789999999999999999999999999999996542111 001 1122211 111 144568999988644333
Q ss_pred hHh----------hccHH-HH-hccCC----CcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 TIQ----------IINAE-CL-QHIKP----GAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 T~~----------lI~~~-~L-~~MK~----GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+.- +++.- .+ ..+.+ ..+-|--+.|+.--..-|...|..
T Consensus 92 ~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 92 APLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 221 23322 22 33322 246666667888766667777765
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.54 Score=46.56 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=33.0
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.++++.|+|. |.||+.+|+.+...|++|++++++.
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~ 41 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA 41 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 367899999995 8999999999999999999998764
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.23 Score=44.85 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=53.1
Q ss_pred eCChhhHHHHHHHhhC----CCEEEEE-CCC--CCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChhhHhhccHH
Q 006758 169 GRSASARALATRSLSF----KMSVLYF-DVP--EGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 169 GlG~IG~~vA~~Lkaf----Gm~V~~~-dr~--~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
|+|.||+.+++.+... +++|.++ +++ ................++++++. ..|+|+=|.+..+-+ +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH
Confidence 8999999999999865 6776665 555 11111111122345679999998 899999995542222 23
Q ss_pred HHhccCCCcEEEEcCCChhh
Q 006758 240 CLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iV 259 (632)
....|+.|.-+|-..-+.+.
T Consensus 76 ~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALA 95 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHH
T ss_pred HHHHHHCCCeEEEECHHHhh
Confidence 44556788888888888777
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.52 Score=50.12 Aligned_cols=88 Identities=10% Similarity=0.159 Sum_probs=54.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCCC--cccccCce-ecCCHHHHhc--cCCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKGK--VTFPSAAR-RMDTLNDLLA--ASDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~--~~~~~g~~-~~~sL~eLL~--~ADVV~l~lPlT~~T~~l 235 (632)
.+|||||.|.||+..+..+... ++++.. +|+++.... .....+.. .+.++++++. +.|+|+++.|....-
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~--- 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA--- 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH---
Confidence 3699999999999887766643 677665 566654321 11222332 3457888886 578899999863321
Q ss_pred ccHHHHhccCCCcEEEEcCC
Q 006758 236 INAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgR 255 (632)
+-....++.|..+|+-.-
T Consensus 79 --e~a~~al~aGk~VIdekP 96 (285)
T TIGR03215 79 --RHARLLAELGKIVIDLTP 96 (285)
T ss_pred --HHHHHHHHcCCEEEECCc
Confidence 122334556666655443
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.47 Score=51.28 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=53.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-cCceecCCH---------HHHh--ccCCEEEEccCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTL---------NDLL--AASDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~-~g~~~~~sL---------~eLL--~~ADVV~l~lPl 228 (632)
+.+|.|+|.|.||...+..++.+|+ +|++.|++....+.+.. .+.....+. .++. ..+|+++-|...
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~ 248 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGS 248 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCC
Confidence 3399999999999999999999997 67777887654432211 111111111 1222 237777777762
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
+. .+ ...+..++++..++.+|=
T Consensus 249 -~~---~~-~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 249 -PP---AL-DQALEALRPGGTVVVVGV 270 (350)
T ss_pred -HH---HH-HHHHHHhcCCCEEEEEec
Confidence 22 11 345555666666666654
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.7 Score=47.27 Aligned_cols=67 Identities=6% Similarity=0.044 Sum_probs=50.4
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|.+|++||-+ ++..+++..+..||++|.+..|..-.....+ ..+ .....++++.++.+|||..-.
T Consensus 154 l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334)
T PRK12562 154 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 689999999975 7889999999999999999998642211000 012 334578999999999998853
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.59 Score=48.16 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=66.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---ccc-----ccCcee----cCCHHHHhccCCEEE
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTF-----PSAARR----MDTLNDLLAASDVIS 223 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~-----~~g~~~----~~sL~eLL~~ADVV~ 223 (632)
+..|++++|.|+|+|.+|..+|+.|...|. ++..+|...-... ..+ ..|... ...+.++-+.+.+..
T Consensus 6 ~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~ 85 (231)
T cd00755 6 LEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDA 85 (231)
T ss_pred HHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 356899999999999999999999999998 8999997642221 000 011111 123556666777776
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
....+++++.. +.+. ++=-++|++- ..+-...+|.+......+.
T Consensus 86 ~~~~i~~~~~~----~l~~--~~~D~Vvdai-D~~~~k~~L~~~c~~~~ip 129 (231)
T cd00755 86 VEEFLTPDNSE----DLLG--GDPDFVVDAI-DSIRAKVALIAYCRKRKIP 129 (231)
T ss_pred eeeecCHhHHH----HHhc--CCCCEEEEcC-CCHHHHHHHHHHHHHhCCC
Confidence 66666554321 1111 1123666652 2233344577776666666
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.51 Score=49.02 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=46.5
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc--------c-------cccCceecCCHHHHhccCCEEEE
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV--------T-------FPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~--------~-------~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
.|++|.|.| .|-||+.+++.|...|.+|.++++....... . +.........+++++..+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 478999999 6999999999999999999988765432100 0 00011122356778888898877
Q ss_pred ccC
Q 006758 225 HCA 227 (632)
Q Consensus 225 ~lP 227 (632)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 664
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.72 Score=49.63 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=31.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.|.|.||..+++.++.+|++|++.+...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58899999999999999999999999998877654
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.9 Score=47.46 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=68.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----c--ccCceec--CCHHHHhccCCEEEEccCCC---hhh
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT----F--PSAARRM--DTLNDLLAASDVISLHCAVT---DET 232 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----~--~~g~~~~--~sL~eLL~~ADVV~l~lPlT---~~T 232 (632)
++.|||+|.+|.++|+.|+..|++|.++|......... . ..++... .+ .+.+..+|+|+..--.. |+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 37899999999999999999999999999764322110 1 1233221 23 45567899888754332 221
Q ss_pred H-------hhccHH-HH-hccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 006758 233 I-------QIINAE-CL-QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 233 ~-------~lI~~~-~L-~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~ 272 (632)
. .++... .+ ..++.-.+-|.-+.|+..-..-|...|+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 123332 22 2334446667777899887777778887543
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.48 Score=53.17 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=55.3
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC------EEEEECCCCCCCC---ccc-----ccCcee----cCCHHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALATRSLSFKM------SVLYFDVPEGKGK---VTF-----PSAARR----MDTLNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm------~V~~~dr~~~~~~---~~~-----~~g~~~----~~sL~eLL~~ADVV~l~ 225 (632)
+|.|||.|.+|..+++.|...|+ ++.++|...-... ..+ ..|... ...+.++-+...+....
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 47899999999999999999888 8999997653221 010 001100 12244555566666666
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
...+++|..+++.+++... -++||+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~---DvVi~a 105 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKL---DGVANA 105 (435)
T ss_pred cccChhhhhhhhHHHhcCC---CEEEEC
Confidence 6666667666766666544 366665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.89 Score=44.86 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=31.4
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.+.|+++.|.|. |.||+.+|+.|...|++|+...+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~ 39 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAG 39 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence 468999999995 899999999999999999877543
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.6 Score=46.52 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=71.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~~T~~lI 236 (632)
...+|-|.|. |.+|..+.+.|..+|++ |+.++|..-..+ -.+...+.++.++-.. .|++++++|. +.+...+
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~---v~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l 82 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTT---VLGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI 82 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCe---EeCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH
Confidence 3456888887 77999999999998885 445676620111 2356677899999887 8999999995 3344454
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
. +..++=-+.++++.-+-+ +-|+.+|.+..+++.+.
T Consensus 83 ~-e~~~~gvk~avI~s~Gf~-~~~~~~l~~~a~~~gir 118 (291)
T PRK05678 83 L-EAIDAGIDLIVCITEGIP-VLDMLEVKAYLERKKTR 118 (291)
T ss_pred H-HHHHCCCCEEEEECCCCC-HHHHHHHHHHHHHcCCE
Confidence 3 333322235555555443 44555888888887765
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.79 Score=49.38 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=52.2
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.+|+||| .|-.|+.+.+.|.... +++.....+.... ....++++.++|+||+++|... ..+.
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~----------~~~~~~~~~~~DvvFlalp~~~------s~~~ 66 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD----------AAARRELLNAADVAILCLPDDA------AREA 66 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc----------ccCchhhhcCCCEEEECCCHHH------HHHH
Confidence 4799999 7999999999998764 4666554332211 0233567788999999999532 2222
Q ss_pred Hhcc-CCCcEEEEcCC
Q 006758 241 LQHI-KPGAFLVNTGS 255 (632)
Q Consensus 241 L~~M-K~GAvLINvgR 255 (632)
...+ +.|..+|+.+.
T Consensus 67 ~~~~~~~g~~VIDlSa 82 (313)
T PRK11863 67 VALIDNPATRVIDAST 82 (313)
T ss_pred HHHHHhCCCEEEECCh
Confidence 2222 56899999884
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.95 Score=47.13 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=57.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC-----------CEEEEECCCCCCCC-------------------------ccccc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFK-----------MSVLYFDVPEGKGK-------------------------VTFPS 204 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG-----------m~V~~~dr~~~~~~-------------------------~~~~~ 204 (632)
+..+|.|||.|.+|..+++.|...| .++.++|...-... ..+..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 6789999999999999999998653 38999997642111 00000
Q ss_pred Cce----ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh--ccCCCcEEEEcCC
Q 006758 205 AAR----RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ--HIKPGAFLVNTGS 255 (632)
Q Consensus 205 g~~----~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~--~MK~GAvLINvgR 255 (632)
.+. .+.. ++++..+|+|+.|+= +-.++..|++.... .| ..++|+.|.
T Consensus 90 ~i~a~~~~~~~-~~~~~~~DiVi~avD-n~~aR~~l~~~~~~~~~~--~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVER-SSTLHRPDIVIGCVD-NRAARLAILRAFEGGYSG--YAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCc-hhhhcCCCEEEECCC-CHHHHHHHHHHHHHhccc--ccceecccC
Confidence 000 1111 344667888888875 45677777766555 22 246777775
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.91 Score=50.12 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=52.9
Q ss_pred ccCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
..|++|+|+|+. .-+..+++.|...|++|.+|||...... ..+....+++.+++..||+|++..-
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 478999999993 5577999999999999999999854332 2256677899999999999988753
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.51 Score=49.66 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=32.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|.+|.|.|.|.+|..+++.++++|++|++.+++..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~ 204 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPS 204 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 578899999999999999999999999999987653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.78 Score=46.44 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=46.6
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--cCce----ec----CCHHHHh-ccCCEEEEcc
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAAR----RM----DTLNDLL-AASDVISLHC 226 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--~g~~----~~----~sL~eLL-~~ADVV~l~l 226 (632)
...+++|.|+| .|.||+.+++.|...|++|+++.|+......... ..+. .. ..+.+.+ ...|+|+++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~ 93 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT 93 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence 35789999999 5999999999999999999988776432110000 0111 11 2234455 5789999776
Q ss_pred CC
Q 006758 227 AV 228 (632)
Q Consensus 227 Pl 228 (632)
+.
T Consensus 94 g~ 95 (251)
T PLN00141 94 GF 95 (251)
T ss_pred CC
Confidence 64
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.27 Score=45.56 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=30.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
.++|.|+|+|.+|..+|+.|...|+ ++.++|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 5789999999999999999999999 899999875
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.53 Score=47.81 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=34.3
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999996 8999999999999999999999875
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.48 Score=39.92 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=31.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG 198 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~ 198 (632)
+|.|||-|.+|-.+|..++.+|.+|.++.+...-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58899999999999999999999999999876443
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.7 Score=48.13 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=33.8
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..+.|+++.|.|. |.||..+|+.+...|++|+++++..
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678999999995 7899999999999999999998764
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.41 E-value=2.2 Score=45.14 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=74.0
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCCcc-----cccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCc
Q 006758 174 ARALATRSLSFKMSVLYFDVPEGKGKVT-----FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGA 248 (632)
Q Consensus 174 G~~vA~~LkafGm~V~~~dr~~~~~~~~-----~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA 248 (632)
|..||-.+...|..|+..+|+..-.+.. .+.|+...++=.+..+.+.+.++-.|....|.+|. .+.+.+++.||
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 6788888888999999999987433311 23355555666788899999999999999998876 57999999999
Q ss_pred EEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 249 FLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 249 vLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+|.|+...+.+ .|+..| ++.+.
T Consensus 112 VicnTCT~sp~---vLy~~L-E~~Lr 133 (340)
T COG4007 112 VICNTCTVSPV---VLYYSL-EGELR 133 (340)
T ss_pred EecccccCchh---HHHHHh-hhhhc
Confidence 99999987655 566666 44443
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=2.3 Score=49.19 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=130.1
Q ss_pred hcCCCceEEEEecccCCc-cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCC
Q 006758 77 RRLRPYQLILCLGSSDRT-VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR 155 (632)
Q Consensus 77 ~~lp~LK~I~~~gaG~D~-VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~ 155 (632)
...|+. +|+.=-.+..+ +.+..--+..|+++|.+--.+ |=-+++.+|+.+|-.
T Consensus 236 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGT---aaV~LAgll~A~r~~---------------------- 289 (563)
T PRK13529 236 RRFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDIQGT---GAVTLAGLLAALKIT---------------------- 289 (563)
T ss_pred HhCCCe-EEehhhcCCchHHHHHHHhccCCCeeccccchH---HHHHHHHHHHHHHHh----------------------
Confidence 345654 45543333322 333333345799999866443 444678888777531
Q ss_pred ccccccCcEEEEEeCChhhHHHHHHHhh----CCC-------EEEEECCCC---CCC-C-----cccccCce--------
Q 006758 156 GMRRCRGLVLGIVGRSASARALATRSLS----FKM-------SVLYFDVPE---GKG-K-----VTFPSAAR-------- 207 (632)
Q Consensus 156 ~~~~L~GktVGIIGlG~IG~~vA~~Lka----fGm-------~V~~~dr~~---~~~-~-----~~~~~g~~-------- 207 (632)
...|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|+.. ... . ..+.....
T Consensus 290 -g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~ 368 (563)
T PRK13529 290 -GEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTE 368 (563)
T ss_pred -CCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccc
Confidence 024789999999999999999999886 588 899999873 111 1 01111000
Q ss_pred -ecCCHHHHhccC--CEEEEccCCChhhHhhccHHHHhccCC---CcEEEEcCCChhhcHHHHHHHHH--cCC-cceEEe
Q 006758 208 -RMDTLNDLLAAS--DVISLHCAVTDETIQIINAECLQHIKP---GAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGCAL 278 (632)
Q Consensus 208 -~~~sL~eLL~~A--DVV~l~lPlT~~T~~lI~~~~L~~MK~---GAvLINvgRG~iVDe~AL~~AL~--sg~-I~GAaL 278 (632)
...+|.|+++.+ |+++=+-- .-++|+++.++.|.+ ..+|.=.|.-....|+.-.+|.+ +|+ |.+.+.
T Consensus 369 ~~~~~L~e~v~~~kPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs 444 (563)
T PRK13529 369 GDVISLLEVVRNVKPTVLIGVSG----QPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS 444 (563)
T ss_pred cCCCCHHHHHhccCCCEEEEecC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC
Confidence 124899999998 99876431 237999999999987 89999999877655555555555 343 332221
Q ss_pred ecCCCCCCCC---ccccCCCcEEEcCCCCCccH-----HHHHHHHHHHHHHHHHHH
Q 006758 279 DGAEGPQWME---AWVREMPNVLILPRSADYSE-----EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 279 DVfE~P~~~~---~pL~~~pNVIiTPHiAg~T~-----ea~~~~~~~a~~nL~~fL 326 (632)
- |.+ -..+ ..--...|+++=|=++-... ..-++|...+++-|..+.
T Consensus 445 p-f~p-v~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v 498 (563)
T PRK13529 445 P-FAP-VEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCV 498 (563)
T ss_pred C-CCC-eeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhC
Confidence 0 110 0000 00113568888887543221 123556666666666653
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.73 Score=44.18 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=56.6
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-- 237 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~-- 237 (632)
..|++|++||+= +++++.++..+.+|.++|+++..... ..+.......++++++||+|++.-- -++|
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~T 77 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGE--EPGDVPDEDAEEILPWADVVIITGS------TLVNGT 77 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--S--SCT-EEGGGHHHHGGG-SEEEEECH------HCCTTT
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCC--CCCcCCHHHHHHHHccCCEEEEEee------eeecCC
Confidence 479999999961 24788888889999999998743321 1111234567889999999998743 1333
Q ss_pred -HHHHhccCCCcEEEEcCCCh
Q 006758 238 -AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 -~~~L~~MK~GAvLINvgRG~ 257 (632)
...|+..++++.+|=+|-..
T Consensus 78 i~~iL~~~~~~~~vil~GpS~ 98 (147)
T PF04016_consen 78 IDDILELARNAREVILYGPSA 98 (147)
T ss_dssp HHHHHHHTTTSSEEEEESCCG
T ss_pred HHHHHHhCccCCeEEEEecCc
Confidence 35677777777777666433
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=2 Score=47.73 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=67.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc---cCceecC--CHHHHhccCCEEEEcc--CCC-hh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP---SAARRMD--TLNDLLAASDVISLHC--AVT-DE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~---~g~~~~~--sL~eLL~~ADVV~l~l--PlT-~~ 231 (632)
.+-+|+|||+|.+|.++|+.|+..|++|.++|....... ..+. .++.... .-.+.+..+|+|+..- |.+ |.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~ 84 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPA 84 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHH
Confidence 456899999999999999999999999999997643211 1111 1322211 1234567899887753 322 21
Q ss_pred hH-------hhccH-HHHhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 232 TI-------QIINA-ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 232 T~-------~lI~~-~~L~~-MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
-. .++.+ +.+.. ++.-.+-|--+.|+.--..-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11 12332 23323 343456666667888777777777775
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.36 Score=48.59 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=46.6
Q ss_pred EEEEEeCChhhHHHHHH--HhhCCCE-EEEECCCCCCCCcc-cccCceecCCHHHHhc--cCCEEEEccCCC
Q 006758 164 VLGIVGRSASARALATR--SLSFKMS-VLYFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~--LkafGm~-V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~ADVV~l~lPlT 229 (632)
.+.|||.|++|++++.. .+..||+ |.+||..+...-.. -+..++..++|+..++ +.|+.++|+|..
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH
Confidence 58999999999999985 4468896 55678765422111 1122445677888888 688999999963
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.3 Score=48.26 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=65.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-------CCCEEEEECCC--CCC---------------CC----cccccCceecCCH
Q 006758 161 RGLVLGIVGRSASARALATRSLS-------FKMSVLYFDVP--EGK---------------GK----VTFPSAARRMDTL 212 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-------fGm~V~~~dr~--~~~---------------~~----~~~~~g~~~~~sL 212 (632)
.-++|+|||.|+=|+.+|+.+.. |..+|..|-.. ... .+ ...+..+..+.+|
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 45789999999999999998763 33344444221 111 00 1233345567889
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
.+.+.+||+++..+|-+- +.. |-++...+.|+++..|...-|
T Consensus 100 ~ea~~dADilvf~vPhQf-~~~-ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQF-IPR-ICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHhccCCEEEEeCChhh-HHH-HHHHHhcccCCCCeEEEeecc
Confidence 999999999999999633 233 346788889999999988766
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.51 Score=51.01 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=24.6
Q ss_pred EEEEEeCChhhHHHHHHHhhC----CCEEEEECC
Q 006758 164 VLGIVGRSASARALATRSLSF----KMSVLYFDV 193 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf----Gm~V~~~dr 193 (632)
+|||+|+|+||+.+.+.|... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 489999999999999998764 377777654
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=4 Score=47.51 Aligned_cols=193 Identities=13% Similarity=0.065 Sum_probs=118.4
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
+..|+++|.+--. +|=-+++.+|+.+|-. ...|.+.+|.|+|.|..|..+|+.+
T Consensus 287 r~~i~~FnDDiQG---TaaV~lAgll~A~r~~-----------------------g~~l~d~riv~~GAGsAgigia~ll 340 (581)
T PLN03129 287 RTTHLCFNDDIQG---TAAVALAGLLAALRAT-----------------------GGDLADQRILFAGAGEAGTGIAELI 340 (581)
T ss_pred ccCCCEeccccch---HHHHHHHHHHHHHHHh-----------------------CCchhhceEEEECCCHHHHHHHHHH
Confidence 4478888876543 4444677888777531 0347899999999999999999998
Q ss_pred hh-----CCC-------EEEEECCCCC--C-C-C------cccccCceecCCHHHHhcc--CCEEEEccCCChhhHhhcc
Q 006758 182 LS-----FKM-------SVLYFDVPEG--K-G-K------VTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 182 ka-----fGm-------~V~~~dr~~~--~-~-~------~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~~T~~lI~ 237 (632)
.. .|+ +++.+|+..- . . . ..+........+|.|+++. .|+++=+-- .-++|+
T Consensus 341 ~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft 416 (581)
T PLN03129 341 ALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSG----VGGTFT 416 (581)
T ss_pred HHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecC----CCCCCC
Confidence 76 476 8999998741 1 0 0 0111111234689999999 899976532 127899
Q ss_pred HHHHhccC---CCcEEEEcCCChhhcHHHHHHHHH--cCC-cceEEeecCCCCCCCC---ccccCCCcEEEcCCCCCccH
Q 006758 238 AECLQHIK---PGAFLVNTGSSQLLDDCAVKQLLI--DGT-LAGCALDGAEGPQWME---AWVREMPNVLILPRSADYSE 308 (632)
Q Consensus 238 ~~~L~~MK---~GAvLINvgRG~iVDe~AL~~AL~--sg~-I~GAaLDVfE~P~~~~---~pL~~~pNVIiTPHiAg~T~ 308 (632)
++.++.|. +..+|.=.+.-..-.|+--.+|++ +|+ |.+.+. -|.+ -..+ ..--...|+++=|=++-...
T Consensus 417 ~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGS-Pf~p-v~~~Gr~~~p~Q~NN~~iFPGiglGal 494 (581)
T PLN03129 417 KEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGS-PFDP-VEYNGKTFHPGQANNAYIFPGIGLGAL 494 (581)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCC-CCCC-eeeCCeeecCccccceeeccchhhHHH
Confidence 99999995 889999888765333333333333 354 332211 0110 0000 00114568888887553322
Q ss_pred -----HHHHHHHHHHHHHHHHHH
Q 006758 309 -----EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 309 -----ea~~~~~~~a~~nL~~fL 326 (632)
..-++|...+++.|..+.
T Consensus 495 ~~~a~~Itd~m~~aAA~aLA~~v 517 (581)
T PLN03129 495 LSGAIRVTDDMLLAAAEALAAQV 517 (581)
T ss_pred hcCCcCCCHHHHHHHHHHHHHhC
Confidence 223666666777777754
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=89.91 E-value=1 Score=47.74 Aligned_cols=33 Identities=18% Similarity=-0.036 Sum_probs=29.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++|.|.|. |-||+.+++.|...|.+|+++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 46788885 9999999999999999999998764
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.69 Score=47.11 Aligned_cols=36 Identities=19% Similarity=0.047 Sum_probs=31.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.++++.|.|. |.||+.+|+.|...|++|++.+++..
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4788999995 89999999999999999999988753
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.3 Score=60.12 Aligned_cols=93 Identities=9% Similarity=0.029 Sum_probs=64.1
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC---------CCCc------------------------ccc---
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG---------KGKV------------------------TFP--- 203 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~---------~~~~------------------------~~~--- 203 (632)
+.-.+|.|+|.|++|+..++.+..+|++ . +++..- .... .|.
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 3457899999999999999999988766 1 222110 0000 000
Q ss_pred --cCc-eecCC-HHHHhccCCEEEEccCCChhhHhhccHH-HHhccCCCc----EEEEcC
Q 006758 204 --SAA-RRMDT-LNDLLAASDVISLHCAVTDETIQIINAE-CLQHIKPGA----FLVNTG 254 (632)
Q Consensus 204 --~g~-~~~~s-L~eLL~~ADVV~l~lPlT~~T~~lI~~~-~L~~MK~GA----vLINvg 254 (632)
..- .+... +++.++.+|+||.++-..+.+-.+|..+ ..+.||+|. +|++++
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 000 00111 4578899999999998888888999988 777899998 888875
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.34 Score=56.87 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=34.9
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
..+.|+++.|.| .|.||..+|+.|...|++|++++++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 357899999999 599999999999999999999998753
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.3 Score=45.00 Aligned_cols=63 Identities=17% Similarity=0.038 Sum_probs=43.0
Q ss_pred EEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee--cCCHHHHhccCCEEEEccCC
Q 006758 166 GIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR--MDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 166 GIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~--~~sL~eLL~~ADVV~l~lPl 228 (632)
.|.| .|-||+.+++.|..-|++|++++|+.............. ...+.+.+..+|+|+.+...
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGE 67 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCC
Confidence 4666 699999999999999999999998765432111111111 13445677889998877754
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.44 Score=49.59 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=55.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCc---eecC--CHH--HH--hccCCEEEEccCCCh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAA---RRMD--TLN--DL--LAASDVISLHCAVTD 230 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~---~~~~--sL~--eL--L~~ADVV~l~lPlT~ 230 (632)
.|.+|.|+|.|.+|+.+++.+++.|++ |.+.+++..........+. .... ++. .. -...|+|+.+++...
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~ 238 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK 238 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence 678999999999999999999999998 7888776432210000011 0000 110 01 134677777665311
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
.....+..|+++..+|+++...
T Consensus 239 -----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 239 -----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred -----HHHHHHHHHhcCCEEEEEecCC
Confidence 1234456677777777776544
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=2.5 Score=46.87 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=69.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc---cCceec-CC-HHHHhccCCEEEEccCCChhhH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFP---SAARRM-DT-LNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~---~g~~~~-~s-L~eLL~~ADVV~l~lPlT~~T~ 233 (632)
+.+++|.|+|.|.+|.++|+.|...|++|.++|....... ..+. .++... .. -+.++..+|+|+..--..+...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 5689999999999999999999999999999997654311 1111 132221 11 2345568999988654433211
Q ss_pred h----------hccH-HHHhc-cC---CCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 Q----------IINA-ECLQH-IK---PGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 ~----------lI~~-~~L~~-MK---~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
- ++.. +.+.. ++ ...+-|--+.|+.--..-|...|+.
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~ 134 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK 134 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 1 2222 23333 32 2356666667888777777777775
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=1.2 Score=49.71 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=61.4
Q ss_pred cccCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH-HhccCCEEEEccC
Q 006758 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND-LLAASDVISLHCA 227 (632)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e-LL~~ADVV~l~lP 227 (632)
.+.|++|+|+|+ ..-+..+++.|...|.+|.+|||...........+ ...+++ .+..||+|+++..
T Consensus 311 ~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~---~~~~~~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 311 NVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYG---IIPVSEVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcC---cccchhhhhcCCCEEEEccC
Confidence 478999999998 56788999999999999999999843211000011 111222 3678999999987
Q ss_pred CChhhHhhccHHHHh-ccCCCcEEEEcCCChh
Q 006758 228 VTDETIQIINAECLQ-HIKPGAFLVNTGSSQL 258 (632)
Q Consensus 228 lT~~T~~lI~~~~L~-~MK~GAvLINvgRG~i 258 (632)
.. +-+. ++-+.+. .|+...+||+ +|+-+
T Consensus 388 h~-~f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 388 HQ-QFKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred CH-Hhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 63 3222 4444444 4554468888 46544
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.78 E-value=1 Score=48.52 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=53.5
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCC---EEEEECCCCCCCCccccc-C-ceecCCHH-HHhccCCEEEEccCCChhhHh
Q 006758 162 GLVLGIVG-RSASARALATRSLSFKM---SVLYFDVPEGKGKVTFPS-A-ARRMDTLN-DLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~~-g-~~~~~sL~-eLL~~ADVV~l~lPlT~~T~~ 234 (632)
+++|+||| .|.+|+.+.+.|...|+ ++.++.+.....+. +.. + ...+.+++ ..+..+|+||+|+|.. .++.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~-l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~ 78 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKE-LSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKK 78 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCe-eeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHH
Confidence 35799998 48999999999998544 55666544333321 111 1 11112222 3457899999999853 2333
Q ss_pred hccHHHHhccCCCcEEEEcCCC
Q 006758 235 IINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG 256 (632)
+.. ..++.|+++|+.+..
T Consensus 79 ~~~----~~~~~G~~VIDlS~~ 96 (334)
T PRK14874 79 YAP----KAAAAGAVVIDNSSA 96 (334)
T ss_pred HHH----HHHhCCCEEEECCch
Confidence 221 123578999998753
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.52 Score=48.70 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=45.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|.|+|. |.||+.+++.|...|.+|.+++++..........+. ....++.+++..+|+|+.+.+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD 74 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence 36889985 999999999999999999999987543211000111 1123466778889998877643
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.2 Score=48.05 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=52.6
Q ss_pred EEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 164 VLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
+|+|+|. |-.|..+.++|... .+++........ +. ..+.++++.++|+||+++|.. .+..+. . .+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~~-----~~~~~~~~~~~D~vFlalp~~-~s~~~~-~-~~ 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----KD-----AAERAKLLNAADVAILCLPDD-AAREAV-S-LV 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----cC-----cCCHhHhhcCCCEEEECCCHH-HHHHHH-H-HH
Confidence 6899985 88999999999975 567776644322 10 124567888999999999963 223332 1 11
Q ss_pred hccCCCcEEEEcCC
Q 006758 242 QHIKPGAFLVNTGS 255 (632)
Q Consensus 242 ~~MK~GAvLINvgR 255 (632)
...|+.+|+.+-
T Consensus 70 --~~~g~~VIDlSa 81 (310)
T TIGR01851 70 --DNPNTCIIDAST 81 (310)
T ss_pred --HhCCCEEEECCh
Confidence 246889999884
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.59 Score=57.04 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=33.6
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~ 194 (632)
+..|+.++|+|||+|.+|..+|..|...|. ++..+|..
T Consensus 327 Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 327 QRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred HHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 357899999999999999999999999988 67777765
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.63 E-value=1 Score=48.02 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=53.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCC--ChhhHh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAV--TDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPl--T~~T~~ 234 (632)
.|.+|.|+|.|.||..++..++. +| .+|++++++....+.....+... .++++.. ..|+|+-++.. ++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G~~~~~~--- 237 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVGGRGSQS--- 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCCCCccHH---
Confidence 58899999999999999988885 54 68999998754332111111111 1122222 36777777653 122
Q ss_pred hccHHHHhccCCCcEEEEcC
Q 006758 235 IINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvg 254 (632)
.+ ...+..++++..+|.+|
T Consensus 238 ~~-~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 238 AI-NQIIDYIRPQGTIGLMG 256 (341)
T ss_pred HH-HHHHHhCcCCcEEEEEe
Confidence 12 24566677777777665
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.3 Score=50.95 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=46.6
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc-----ccC--ceecCCHHHHhccCCE
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFK-MSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDV 221 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~ADV 221 (632)
+.|.+|++||= |++..+++..+..|| |+|.+..|..-.....+ ..| .....++++.+++||+
T Consensus 172 l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 172 NSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 68999999998 588999999999998 99999998643211111 112 3346789999999995
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.81 Score=49.76 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=32.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.|.|.||..+++.++++|++|++.++..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999999887654
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.2 Score=49.94 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=70.1
Q ss_pred EEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC-cc-cccCc-------eecCCHHHHhccCCEEEEccCCC-h---
Q 006758 165 LGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK-VT-FPSAA-------RRMDTLNDLLAASDVISLHCAVT-D--- 230 (632)
Q Consensus 165 VGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~-~~~g~-------~~~~sL~eLL~~ADVV~l~lPlT-~--- 230 (632)
|.|+|. |.+|+.+++.|..-+++|.+.-|...... .. ...++ ...++|.+.|..+|+|++++|.. +
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 678995 99999999999999999999988763211 00 01111 12356778899999999999954 1
Q ss_pred -hhHhhccHHHHhccCCCcEEEEcCCCh-----------hhcH-HHHHHHHHcCCcceEEee
Q 006758 231 -ETIQIINAECLQHIKPGAFLVNTGSSQ-----------LLDD-CAVKQLLIDGTLAGCALD 279 (632)
Q Consensus 231 -~T~~lI~~~~L~~MK~GAvLINvgRG~-----------iVDe-~AL~~AL~sg~I~GAaLD 279 (632)
....++++..-+..| --+.-..+... ..+. ..+.+.|++..+....+-
T Consensus 81 ~~~~~li~Aa~~agVk-~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~i~ 141 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVK-HFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTIIR 141 (233)
T ss_dssp HHHHHHHHHHHHHT-S-EEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEEEE
T ss_pred hhhhhHHHhhhccccc-eEEEEEecccccccccccccchhhhhhhhhhhhhhhccccceecc
Confidence 355666665555443 22222333322 1122 245667777776654444
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.68 Score=49.41 Aligned_cols=37 Identities=16% Similarity=-0.003 Sum_probs=33.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+++++|.|.|. |-||..+++.|...|.+|+++|+..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 367899999995 9999999999999999999999753
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.6 Score=43.18 Aligned_cols=35 Identities=17% Similarity=0.026 Sum_probs=30.8
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
+.++++.|.|. |.||+.+|+.+...|++|+...+.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 57899999995 999999999999999999877654
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.62 Score=49.54 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=32.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||..+++.+++.|++|++.+++..
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~ 201 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE 201 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence 588999999999999999999999999999887653
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.01 E-value=3.2 Score=46.13 Aligned_cols=112 Identities=10% Similarity=0.097 Sum_probs=67.3
Q ss_pred cccC-cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCC-cccccCceec-C-CHHHHhccCCEEEEccCCCh--
Q 006758 159 RCRG-LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGK-VTFPSAARRM-D-TLNDLLAASDVISLHCAVTD-- 230 (632)
Q Consensus 159 ~L~G-ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~-~~~~~g~~~~-~-sL~eLL~~ADVV~l~lPlT~-- 230 (632)
++.+ ++|.|||+|.+|.+.++.|... |++|.++|....... ..+..++... . .-.+.+.++|+|+..--..+
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~ 82 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALAT 82 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCC
Confidence 3566 7899999999999999999977 589999996542211 1122233221 1 11234578998887543322
Q ss_pred -hhH-------hhccHH-HH-hccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 231 -ETI-------QIINAE-CL-QHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 231 -~T~-------~lI~~~-~L-~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
... .++.+- .+ ..++.-.+-|--+-|+.--..-|...|..
T Consensus 83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 211 123322 32 23344456666667888777767777764
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.79 Score=46.00 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.7
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||..+|+.|...|++|++.+++.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999995 9999999999999999999998875
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.88 Score=45.01 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=33.6
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.++++.|.| .|.||..+++.|...|++|++.+|+.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999 79999999999999999999999874
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=1 Score=48.40 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=50.5
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----c--ccc-CceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV-----T--FPS-AARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----~--~~~-g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|++|++||- +++..+++..+..||++|.+..|..-.... . ... .+....++++.++.+|||..-.
T Consensus 151 l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 151 LNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 68999999997 689999999999999999999986521110 0 001 2233578999999999998843
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=88.79 E-value=1 Score=48.60 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=31.2
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
+|+|||-|..|..+++.++.+|++|+++|+++..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 5899999999999999999999999999987643
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=88.73 E-value=2 Score=48.19 Aligned_cols=68 Identities=22% Similarity=0.191 Sum_probs=45.6
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----cc-cC--ceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT----FP-SA--ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----~~-~g--~~~~~sL~eLL~~ADVV~l~lP 227 (632)
-++++|.|.| .|-||+.+++.|...|.+|+++|+........ +. .. ....+-++.++..+|+|+-+.-
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa 192 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLAC 192 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeee
Confidence 4779999999 59999999999999999999998643211100 00 01 1122334556678898876653
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.68 Score=46.51 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=33.2
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 468999999996 6899999999999999999999875
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.70 E-value=1.5 Score=47.61 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=51.2
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCC-CCCCcc---ccc-----------C-ceecCCHHHHhccCCEEEE
Q 006758 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDVPE-GKGKVT---FPS-----------A-ARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~-~~~~~~---~~~-----------g-~~~~~sL~eLL~~ADVV~l 224 (632)
.+|+|+| .|.+|+.+.+.|..+ .+++.++..+. ..+... ++. . .....+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 5899998 999999999999876 45888873222 222110 000 0 011123444 478999999
Q ss_pred ccCCChhhHhhccHHHHhcc-CCCcEEEEcCC
Q 006758 225 HCAVTDETIQIINAECLQHI-KPGAFLVNTGS 255 (632)
Q Consensus 225 ~lPlT~~T~~lI~~~~L~~M-K~GAvLINvgR 255 (632)
++|-... ..++ ..+ +.|..+|+.+-
T Consensus 83 a~p~~~s-~~~~-----~~~~~~G~~vIDls~ 108 (349)
T PRK08664 83 ALPSDVA-GEVE-----EEFAKAGKPVFSNAS 108 (349)
T ss_pred eCChhHH-HHHH-----HHHHHCCCEEEECCc
Confidence 9996322 2222 222 35776777653
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.3 Score=48.36 Aligned_cols=88 Identities=16% Similarity=0.300 Sum_probs=53.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh-CCCE---EEEECCCCCCCCc-ccccCceec--CCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGR-SASARALATRSLS-FKMS---VLYFDVPEGKGKV-TFPSAARRM--DTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka-fGm~---V~~~dr~~~~~~~-~~~~g~~~~--~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
++.+|||||. |.+|+.+.+.|.. -.+. +..+......++. .+......+ .+.++ +.++|+|++++|.. .+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence 4568999998 9999999999984 4555 5555443333321 111111111 23333 47899999999853 22
Q ss_pred HhhccHHHHhc-cCCCcEEEEcCC
Q 006758 233 IQIINAECLQH-IKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~-MK~GAvLINvgR 255 (632)
.+.... .+.|+++|+.+.
T Consensus 82 -----~~~~~~~~~~G~~VID~Ss 100 (347)
T PRK06728 82 -----RQFVNQAVSSGAIVIDNTS 100 (347)
T ss_pred -----HHHHHHHHHCCCEEEECch
Confidence 222222 357999999883
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.76 Score=49.64 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=47.7
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc-------ccc-------CceecCCHHHHhccCCE
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVT-------FPS-------AARRMDTLNDLLAASDV 221 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~-------~~~-------g~~~~~sL~eLL~~ADV 221 (632)
+.++.++|.|.| .|-||+.+++.|... |.+|+++++........ ... .......+.+++..+|+
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 457788999999 599999999999987 59999999764221100 000 11112346677888998
Q ss_pred EEEccC
Q 006758 222 ISLHCA 227 (632)
Q Consensus 222 V~l~lP 227 (632)
|+-+.-
T Consensus 90 ViHlAa 95 (386)
T PLN02427 90 TINLAA 95 (386)
T ss_pred EEEccc
Confidence 876653
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=88.58 E-value=2.4 Score=46.98 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=60.4
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEE--CCCCCCCC-------c---ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM-------SVLYF--DVPEGKGK-------V---TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~--dr~~~~~~-------~---~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|+|||. |.+|..+|-.+..-|+ .+..+ |......+ . .+...+.....-.+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 57999999 9999999998875443 34445 65543222 0 1111122123456889999999
Q ss_pred EEccCCC--h-hh--------Hhhcc--HHHHhc-cCCCcEEEEcCCChhhcHHHHHHH
Q 006758 223 SLHCAVT--D-ET--------IQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 223 ~l~lPlT--~-~T--------~~lI~--~~~L~~-MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
+++.-.. + +| ..++. ...+.. -+|.+++|.++ ..+|.-+.+-.
T Consensus 125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v~~ 181 (387)
T TIGR01757 125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALIAM 181 (387)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHHHH
Confidence 9976542 2 12 22221 112333 44889999887 56666554443
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=88.55 E-value=2.8 Score=39.67 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=68.3
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCC---Ccccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEE
Q 006758 175 RALATRSLSFKMSVLYFDVPEGKG---KVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (632)
Q Consensus 175 ~~vA~~LkafGm~V~~~dr~~~~~---~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvL 250 (632)
=..+++|...|++|++=.-..... +..|. .|+.-..+-++++.+||+|+..=|.+ .+.++.|++|.++
T Consensus 17 P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~l 88 (136)
T PF05222_consen 17 PEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEE
T ss_pred HHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEE
Confidence 456677888899999865442211 12232 35555566779999999998887653 5678889999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceEEeecCCC
Q 006758 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 251 INvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
|-...-. ....+++.|.++++...++|....
T Consensus 89 i~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 89 IGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 9876644 588899999999999888886643
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A .... |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.81 Score=50.18 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=33.2
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
...|++|.|+|. |.||+.+++.|...|.+|++++|+.
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 457889999996 9999999999999999999999875
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=88.38 E-value=1.2 Score=48.42 Aligned_cols=87 Identities=11% Similarity=0.158 Sum_probs=51.5
Q ss_pred EEEEEe-CChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccccCc-eecCCH-HHHhccCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVG-RSASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTL-NDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIG-lG~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~~g~-~~~~sL-~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|+||| .|.+|+.+.+.|...++ ++.++.+....+......+. ..+.++ .+.+..+|+|++|+|.. .+..+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence 489999 89999999999988555 34455444333321111111 111122 23458899999999953 222221
Q ss_pred HHHHhccCCCcEEEEcCC
Q 006758 238 AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgR 255 (632)
.. .++.|+++|+.+.
T Consensus 79 ~~---~~~~G~~VID~ss 93 (339)
T TIGR01296 79 PK---AAKCGAIVIDNTS 93 (339)
T ss_pred HH---HHHCCCEEEECCH
Confidence 11 2356889998874
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=88.37 E-value=0.8 Score=47.89 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=31.4
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.| .|.+|..+++.++.+|++|++.+++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 588999999 59999999999999999999887664
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.35 E-value=0.62 Score=44.36 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=44.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--ee---cCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RR---MDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~~---~~sL~eLL~~ADVV~l~lPl 228 (632)
+++++.+||+| -|..+|..|...|.+|++.|.++...+.....+. .. ...--++-..+|+|--+-|-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 56889999999 8999999999999999999988753321111111 11 11223456666766666554
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=88.24 E-value=0.77 Score=47.78 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=55.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-cC----C-HHHHhccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MD----T-LNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-~~----s-L~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.|.+|.|+|.|.+|+.+++.++.+|++|++.+++....+.....+... .. . ........|+|+.++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 578899999999999999999999999999887653221100011100 00 0 0011234677777654311
Q ss_pred hccHHHHhccCCCcEEEEcCC
Q 006758 235 IINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgR 255 (632)
.....+..|+++..+|+++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12445677888888888764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=88.20 E-value=0.84 Score=46.23 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=56.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccC-ceecCC-HHHH--hccCCEEEEccCCChhhHhh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSA-ARRMDT-LNDL--LAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g-~~~~~s-L~eL--L~~ADVV~l~lPlT~~T~~l 235 (632)
.|.+|.|.|.|.+|..+.+.++++|++ |++.++...........+ ...... .+.. -...|+|+.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 688999999999999999999999999 888886543221100011 000000 1111 124688877665322 1
Q ss_pred ccHHHHhccCCCcEEEEcCCC
Q 006758 236 INAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG 256 (632)
+ ...+..|+++..++++|-.
T Consensus 173 ~-~~~~~~l~~~g~~~~~g~~ 192 (277)
T cd08255 173 L-ETALRLLRDRGRVVLVGWY 192 (277)
T ss_pred H-HHHHHHhcCCcEEEEEecc
Confidence 2 4456778888888887653
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.3 Score=44.79 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.6
Q ss_pred ccccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCC
Q 006758 158 RRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 158 ~~L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
..|.|+++.|.|.+ .||..+|+.+...|++|++.++.
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~ 41 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWT 41 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecc
Confidence 45899999999985 69999999999999999987643
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.8 Score=47.09 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=52.9
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccccCc-eecCCHH-HHhccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAA-RRMDTLN-DLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~~g~-~~~~sL~-eLL~~ADVV~l~lPlT~~T~~ 234 (632)
...+|+|||. |.+|+.+.+.|..-++ ++.++......++.....+. ..+.+++ +.+..+|+|++++|.. ....
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~ 84 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK 84 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence 4578999995 8999999999987433 55444433222221111111 1122222 4558899999999963 2223
Q ss_pred hccHHHHhc-cCCCcEEEEcCC
Q 006758 235 IINAECLQH-IKPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~-MK~GAvLINvgR 255 (632)
+ ... .+.|+.+|+.+-
T Consensus 85 ~-----~~~~~~~g~~VIDlS~ 101 (344)
T PLN02383 85 F-----GPIAVDKGAVVVDNSS 101 (344)
T ss_pred H-----HHHHHhCCCEEEECCc
Confidence 3 222 256999999983
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.12 E-value=1 Score=48.71 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++..
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 68999999999999999999999999 6998887653
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.95 Score=48.21 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=47.9
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc---c---------cccCceecCCHHHHhccCCEEEE
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV---T---------FPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~---------~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
++-.+++|.|.| .|-||+.+++.|...|.+|++.++....... . ..........+.+++...|+|+.
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 456889999999 5999999999999999999998775422110 0 00011112235667778898777
Q ss_pred ccCC
Q 006758 225 HCAV 228 (632)
Q Consensus 225 ~lPl 228 (632)
+...
T Consensus 86 ~A~~ 89 (353)
T PLN02896 86 VAAS 89 (353)
T ss_pred CCcc
Confidence 6643
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.2 Score=46.84 Aligned_cols=108 Identities=7% Similarity=0.101 Sum_probs=75.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhC----CC-------EEEEECCCC----CCCC-----cccccCcee---cCCHHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSF----KM-------SVLYFDVPE----GKGK-----VTFPSAARR---MDTLNDL 215 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf----Gm-------~V~~~dr~~----~~~~-----~~~~~g~~~---~~sL~eL 215 (632)
.|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+.. .... ..+...... ..+|.|+
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~ea 101 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEA 101 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHH
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHHHH
Confidence 48999999999999999999999887 88 589999873 1111 111111111 1489999
Q ss_pred hccC--CEEEEccCCChhhHhhccHHHHhccCC---CcEEEEcCCChhhcHHHHHHHHHc
Q 006758 216 LAAS--DVISLHCAVTDETIQIINAECLQHIKP---GAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 216 L~~A--DVV~l~lPlT~~T~~lI~~~~L~~MK~---GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++.+ |+++=+-- .-++|+++.++.|.+ ..+|.=.+.-..-.|+.-.+|.+-
T Consensus 102 v~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~ 157 (255)
T PF03949_consen 102 VKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEW 157 (255)
T ss_dssp HHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHT
T ss_pred HHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhh
Confidence 9999 99987642 358999999999987 899999998777556555566554
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.93 E-value=1.2 Score=46.56 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=46.4
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc---------------ccccCceecCCHHHHhccCCEEEE
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV---------------TFPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~---------------~~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
.|+++.|.|. |-||+.+++.|...|++|++..++...... .+........++.+++...|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 4789999995 999999999999999999887665432110 000111223456677888998887
Q ss_pred ccC
Q 006758 225 HCA 227 (632)
Q Consensus 225 ~lP 227 (632)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 764
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=0.58 Score=47.87 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=32.9
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.++++.|.|. |.||+.+|+.|...|++|++++++.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~ 40 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ 40 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 467899999985 7899999999999999999999864
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.2 Score=47.94 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=45.4
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCCEEEEECCCCCCCC-ccc--cc-------CceecC-CHHHHhccCCEEEEcc--C
Q 006758 163 LVLGIVGRSASARALATRSLS--FKMSVLYFDVPEGKGK-VTF--PS-------AARRMD-TLNDLLAASDVISLHC--A 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fGm~V~~~dr~~~~~~-~~~--~~-------g~~~~~-sL~eLL~~ADVV~l~l--P 227 (632)
++|+|||.|.||+.+|-.|.. ++-++..||......+ ... .. ...... .=.+.+..||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 479999999999999999853 5558999998843222 000 00 011111 1156789999999998 5
Q ss_pred CChh
Q 006758 228 VTDE 231 (632)
Q Consensus 228 lT~~ 231 (632)
-.|.
T Consensus 81 rKpG 84 (313)
T COG0039 81 RKPG 84 (313)
T ss_pred CCCC
Confidence 5553
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.95 Score=47.59 Aligned_cols=35 Identities=6% Similarity=0.069 Sum_probs=32.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.|.|.+|..++..++++|++|++.+++.
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 57899999999999999999999999999988764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.1 Score=45.93 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=33.7
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..+.|+++.|.|. |.||+.+|+.+...|++|++.+++.
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 3578999999997 6799999999999999999998765
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.3 Score=46.77 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=31.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
.|.+|.|.|.|.+|..+++.++.+|+ .|++.+++.
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~ 207 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE 207 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 58899999999999999999999999 788887654
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.44 Score=51.45 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=39.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceec
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM 209 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~ 209 (632)
.|.+++|+|+|.+|.+++.-++++|+ +|+++|.+...-+.....|+...
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~ 241 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEF 241 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCccee
Confidence 78999999999999999999999998 89999998754433333344333
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.9 Score=42.23 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=34.0
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+.|+++.|+|. |.||+.+++.+..-|++|++++|+..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 478999999985 99999999999989999999998753
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.1 Score=47.74 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~ 196 (632)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++..
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~ 212 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 588999999999999999999999995 888887653
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=1.1 Score=44.41 Aligned_cols=37 Identities=22% Similarity=0.069 Sum_probs=33.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||+.+++.|...|++|++.+++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~ 40 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP 40 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence 367899999996 9999999999999999999998864
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.34 E-value=0.74 Score=45.58 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=33.5
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+.|+++.|+|. |.||..+|+.+...|++|++++++.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 68999999998 9999999999999999999999875
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=87.26 E-value=0.89 Score=48.83 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=32.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||..+++.++..|+ +|++.+++..
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~ 227 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNED 227 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 58899999999999999999999999 6988887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.24 E-value=0.52 Score=47.21 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=68.0
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcc--cccC-ce-----------------ecCCHHHHhc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVT--FPSA-AR-----------------RMDTLNDLLA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~--~~~g-~~-----------------~~~sL~eLL~ 217 (632)
.|.|+.|.+-|.|. ||+.+...|...|.+|+.+.|++...... +..+ +. .+-.++-|..
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLVN 83 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLVN 83 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhhc
Confidence 47899999999885 99999999999999999999986433200 0001 00 0111222222
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
++-+-++| |..+-|+.-| +..+=||+ |+-+.-.+-..+.|-...+.||...|..
T Consensus 84 NAgvA~~~-pf~eiT~q~f---------Dr~F~VNv-ravi~v~Q~var~lv~R~~~GaIVNvSS 137 (245)
T KOG1207|consen 84 NAGVATNH-PFGEITQQSF---------DRTFAVNV-RAVILVAQLVARNLVDRQIKGAIVNVSS 137 (245)
T ss_pred cchhhhcc-hHHHHhHHhh---------cceeeeee-eeeeeHHHHHHHhhhhccCCceEEEecc
Confidence 22222222 1111122111 23455776 6666666677778888888888888865
|
|
| >COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.19 E-value=1.3 Score=47.70 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=49.7
Q ss_pred cccCcEEEEEe---CChhhHHHHHHHhhCCCEEEEECCCCCCCC----ccccc---CceecCCHHHHhccCCEEEE
Q 006758 159 RCRGLVLGIVG---RSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPS---AARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 159 ~L~GktVGIIG---lG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~~~---g~~~~~sL~eLL~~ADVV~l 224 (632)
++.|++|+|+| +|+...+.+..|..||.+|..+.|..-... ..... .....+.++|.+.++||+.+
T Consensus 155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 37999999999 899999999999999999999998753220 11111 12334556669999999954
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.17 E-value=2.3 Score=43.30 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=32.5
Q ss_pred cccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.+.|+++.|.|. +.||+++|+.|...|++|++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 478999999998 489999999999999999998765
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=1 Score=44.40 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=32.4
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+.++++.|+|. |.||+.+++.|...|++|++.+|+.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 56899999985 9999999999999999999999875
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=87.12 E-value=1.3 Score=44.21 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=63.4
Q ss_pred EEEEEeCChhhHHHHH--HH-h--hCC-CEEEEECCCCCCCC------------cccccCceecCCHHHHhccCCEEEEc
Q 006758 164 VLGIVGRSASARALAT--RS-L--SFK-MSVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~--~L-k--afG-m~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+|+|||.|..-...-- .+ . .+. .+|..+|.+....+ ...+..+....++++.++.||+|+++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 5899999987655322 12 2 343 48999999875333 11122234567999999999999998
Q ss_pred cCCChh-----------hHhhcc------------------------HHHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 226 CAVTDE-----------TIQIIN------------------------AECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 226 lPlT~~-----------T~~lI~------------------------~~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
+-.... -+|++. .+.+..+.|+|+|||.+.-.-+-.+|+.+.
T Consensus 81 irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~ 157 (183)
T PF02056_consen 81 IRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRY 157 (183)
T ss_dssp --TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHH
T ss_pred eeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHh
Confidence 754321 112222 245566779999999998776666666654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.3 Score=47.45 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=53.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-cccCcee---c---CCHHHHhccCCEEEEccCCChhhH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARR---M---DTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-~~~g~~~---~---~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.|.+|.|+|.|.+|..+++.++..|++|++.+......... ...++.. . ..+.++....|+|+-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 68899999999999999999999999988887654221100 0011110 0 1122233345777766653211
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
+ ...+..++++..+|.+|.
T Consensus 258 --~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 --L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --H-HHHHHHhccCCEEEEECC
Confidence 1 234556677777777654
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.1 Score=47.07 Aligned_cols=35 Identities=9% Similarity=-0.041 Sum_probs=31.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|.|. |.+|..+++.++.+|++|++..++.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 6889999998 9999999999999999998887654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.97 E-value=1.4 Score=45.08 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=31.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~ 195 (632)
.|.+|.|.|.|.+|..+++.+++.|++ |++..+..
T Consensus 129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~ 164 (312)
T cd08269 129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRP 164 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 678899999999999999999999999 88877654
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=86.95 E-value=1.6 Score=47.36 Aligned_cols=67 Identities=15% Similarity=0.062 Sum_probs=47.8
Q ss_pred c-cCcEEEEEeCC-------hhhHHHHHHHhhCCCEEEEECC-CCCCCCcc-----------cccCceecCCHHHHhccC
Q 006758 160 C-RGLVLGIVGRS-------ASARALATRSLSFKMSVLYFDV-PEGKGKVT-----------FPSAARRMDTLNDLLAAS 219 (632)
Q Consensus 160 L-~GktVGIIGlG-------~IG~~vA~~LkafGm~V~~~dr-~~~~~~~~-----------~~~g~~~~~sL~eLL~~A 219 (632)
+ .|++|+|+|.| ++..+++..+..||++|.+..| ..-..... .........++++.++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 78999887654 6888888888999999999998 43211100 011233467899999999
Q ss_pred CEEEEcc
Q 006758 220 DVISLHC 226 (632)
Q Consensus 220 DVV~l~l 226 (632)
|||..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998743
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.89 E-value=1.1 Score=44.26 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=34.3
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKM-SVLYFDVPEGK 197 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm-~V~~~dr~~~~ 197 (632)
.+.++++.|+| .|.||+.+|+.|...|+ +|+.++++...
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 46789999999 59999999999999999 99999987643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 632 | ||||
| 3ga0_A | 358 | Ctbp1BARS GLY172->glu Mutant Structure: Impairing N | 6e-25 | ||
| 1hl3_A | 358 | CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK | 8e-25 | ||
| 1mx3_A | 347 | Crystal Structure Of Ctbp Dehydrogenase Core Holo F | 2e-24 | ||
| 2ome_A | 336 | Crystal Structure Of Human Ctbp2 Dehydrogenase Comp | 3e-24 | ||
| 1hku_A | 358 | CtbpBARS: A DUAL-Function Protein Involved In Trans | 3e-24 | ||
| 3k5p_A | 416 | Crystal Structure Of Amino Acid-Binding Act: D-Isom | 9e-12 | ||
| 3kb6_A | 334 | Crystal Structure Of D-lactate Dehydrogenase From A | 3e-10 | ||
| 1j4a_A | 333 | Insights Into Domain Closure, Substrate Specificity | 7e-10 | ||
| 2dld_A | 337 | D-Lactate Dehydrogenase Complexed With Nadh And Oxa | 8e-10 | ||
| 1j49_A | 333 | Insights Into Domain Closure, Substrate Specificity | 1e-09 | ||
| 1dxy_A | 333 | Structure Of D-2-Hydroxyisocaproate Dehydrogenase L | 2e-09 | ||
| 2p9c_A | 410 | Crystal Structure Of Serine Bound G336v Mutant Of E | 3e-09 | ||
| 2p9g_A | 410 | Crystal Structure Of Serine Bound G336v,G337v Doubl | 3e-09 | ||
| 4ebf_A | 334 | Semet Thermostable Phosphite Dehydrogenase Glu175-A | 7e-09 | ||
| 4e5m_A | 329 | Thermostable Phosphite Dehydrogenase E175aA176R IN | 9e-09 | ||
| 4e5k_A | 329 | Thermostable Phosphite Dehydrogenase In Complex Wit | 9e-09 | ||
| 4e5p_A | 332 | Thermostable Phosphite Dehydrogenase A176r Variant | 9e-09 | ||
| 4e5n_A | 330 | Thermostable Phosphite Dehydrogenase In Complex Wit | 1e-08 | ||
| 1psd_A | 409 | The Allosteric Ligand Site In The Vmax-Type Coopera | 2e-08 | ||
| 1gdh_A | 320 | Crystal Structure Of A Nad-Dependent D-Glycerate De | 2e-08 | ||
| 1sc6_A | 404 | Crystal Structure Of W139g D-3-Phosphoglycerate Deh | 5e-08 | ||
| 2yq4_A | 343 | Crystal Structure Of D-isomer Specific 2-hydroxyaci | 6e-08 | ||
| 2dbr_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 7e-08 | ||
| 1wwk_A | 307 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 7e-08 | ||
| 3fn4_A | 401 | Apo-form Of Nad-dependent Formate Dehydrogenase Fro | 8e-08 | ||
| 2gsd_A | 402 | Nad-dependent Formate Dehydrogenase From Bacterium | 9e-08 | ||
| 2dbq_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 2e-07 | ||
| 3ddn_A | 528 | Crystal Structure Of Hydroxypyruvic Acid Phosphate | 2e-07 | ||
| 1ygy_A | 529 | Crystal Structure Of D-3-Phosphoglycerate Dehydroge | 2e-07 | ||
| 3ba1_A | 333 | Structure Of Hydroxyphenylpyruvate Reductase From C | 4e-07 | ||
| 2gug_A | 401 | Nad-dependent Formate Dehydrogenase From Pseudomona | 5e-07 | ||
| 2go1_A | 401 | Nad-Dependent Formate Dehydrogenase From Pseudomona | 5e-07 | ||
| 2nac_A | 393 | High Resolution Structures Of Holo And Apo Formate | 5e-07 | ||
| 1yba_A | 410 | The Active Form Of Phosphoglycerate Dehydrogenase L | 6e-07 | ||
| 2d0i_A | 333 | Crystal Structure Ph0520 Protein From Pyrococcus Ho | 8e-07 | ||
| 3hg7_A | 324 | Crystal Structure Of D-Isomer Specific 2-Hydroxyaci | 8e-07 | ||
| 1xdw_A | 331 | Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase | 9e-07 | ||
| 2w2k_A | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 2e-06 | ||
| 2w2l_D | 348 | Crystal Structure Of The Holo Forms Of Rhodotorula | 2e-06 | ||
| 2cuk_A | 311 | Crystal Structure Of Tt0316 Protein From Thermus Th | 2e-06 | ||
| 2w2k_B | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 3e-06 | ||
| 3naq_A | 357 | Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro | 1e-05 | ||
| 3n7u_A | 351 | Nad-Dependent Formate Dehydrogenase From Higher-Pla | 1e-05 | ||
| 4dgs_A | 340 | The Crystals Structure Of Dehydrogenase From Rhizob | 7e-05 | ||
| 3gg9_A | 352 | Crystal Structure Of Putative D-3-Phosphoglycerate | 7e-05 | ||
| 2o4c_A | 380 | Crystal Structure Of D-erythronate-4-phosphate Dehy | 5e-04 | ||
| 2j6i_A | 364 | Candida Boidinii Formate Dehydrogenase (Fdh) C-Term | 5e-04 | ||
| 2fss_A | 365 | Candida Boidinii Formate Dehydrogenase (Fdh) K47e M | 6e-04 |
| >pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358 | Back alignment and structure |
|
| >pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358 | Back alignment and structure |
|
| >pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347 | Back alignment and structure |
|
| >pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336 | Back alignment and structure |
|
| >pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358 | Back alignment and structure |
|
| >pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416 | Back alignment and structure |
|
| >pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334 | Back alignment and structure |
|
| >pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337 | Back alignment and structure |
|
| >pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333 | Back alignment and structure |
|
| >pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334 | Back alignment and structure |
|
| >pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329 | Back alignment and structure |
|
| >pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329 | Back alignment and structure |
|
| >pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332 | Back alignment and structure |
|
| >pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409 | Back alignment and structure |
|
| >pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320 | Back alignment and structure |
|
| >pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404 | Back alignment and structure |
|
| >pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343 | Back alignment and structure |
|
| >pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334 | Back alignment and structure |
|
| >pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307 | Back alignment and structure |
|
| >pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401 | Back alignment and structure |
|
| >pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402 | Back alignment and structure |
|
| >pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334 | Back alignment and structure |
|
| >pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528 | Back alignment and structure |
|
| >pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529 | Back alignment and structure |
|
| >pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333 | Back alignment and structure |
|
| >pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401 | Back alignment and structure |
|
| >pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401 | Back alignment and structure |
|
| >pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393 | Back alignment and structure |
|
| >pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333 | Back alignment and structure |
|
| >pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324 | Back alignment and structure |
|
| >pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331 | Back alignment and structure |
|
| >pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348 | Back alignment and structure |
|
| >pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348 | Back alignment and structure |
|
| >pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311 | Back alignment and structure |
|
| >pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348 | Back alignment and structure |
|
| >pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357 | Back alignment and structure |
|
| >pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351 | Back alignment and structure |
|
| >pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340 | Back alignment and structure |
|
| >pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352 | Back alignment and structure |
|
| >pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380 | Back alignment and structure |
|
| >pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364 | Back alignment and structure |
|
| >pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 632 | |||
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 3e-35 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 1e-33 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 2e-33 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 9e-33 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 1e-32 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 4e-32 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 2e-31 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 2e-31 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 3e-31 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 4e-31 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 6e-31 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 2e-30 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 4e-30 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 1e-29 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 1e-28 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 3e-28 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 2e-27 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 4e-25 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 7e-25 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 2e-24 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 4e-24 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 2e-23 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 6e-23 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 4e-22 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 2e-21 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 3e-21 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 2e-20 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 5e-20 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 3e-18 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 1e-17 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 2e-17 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 3e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 9e-05 |
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-35
Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 17/226 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
A+ +A+ +ALLL +R + + V + +G + ++G
Sbjct: 83 ADAVAEFALALLLAPYKRIIQYGE-KMKRGDYGRDV-----EIPLIQGEKVAVLGLGEIG 136
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
+ + V F K R ++L + L + + T
Sbjct: 137 TRVGKILAALGAQVRGFS-RTPK-----EGPWRFTNSLEEALREARAAVCALPLNKHTRG 190
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVR 292
++ + L + A VN G +++LD V ++L + A D +A
Sbjct: 191 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 250
Query: 293 EMPNVLILP--RSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
+PNV+ P +E VW ++ +A+ L T + G P+N
Sbjct: 251 SLPNVVATPWVAGGYGNERVWRQMVMEAVRNLIT-YATGGRPRNIA 295
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 1e-33
Identities = 53/244 (21%), Positives = 95/244 (38%), Gaps = 5/244 (2%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALS--ASGWLGSVQP 152
+D + G+ + + +D + L+L + R R A + +
Sbjct: 94 LDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLE 153
Query: 153 LCRGMRRCRGLVLGIVGRSASARALATR-SLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
+ + RG VLG VG A + +A + M ++Y+DV + A R+D+
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
L +L SD +S+ T +I+ +KPG+ +VNT ++ A+ L G
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 272 TLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330
L LD E PQ + + EM +V + + E + E ++ + F G
Sbjct: 274 KLLSAGLDVHEFEPQ-VSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQGK 332
Query: 331 IPKN 334
Sbjct: 333 PLLT 336
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-33
Identities = 77/250 (30%), Positives = 134/250 (53%), Gaps = 14/250 (5%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGW---LGSVQ 151
+D A DLG+ + +V + EE AD+ + +L L RR L + AL + ++
Sbjct: 99 IDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQ-ALREGTRVQSVEQIR 157
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRM 209
+ G R RG LGI+G +A+A R+ +F +VL++D + +G + +R+
Sbjct: 158 EVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERAL---GLQRV 214
Query: 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269
TL DLL SD ++LHC + + +IN ++ ++ GAFLVNT L+D+ A+ Q L
Sbjct: 215 STLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 274
Query: 270 DGTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDK-AISVLQTFF 326
+G + G ALD +E + + +++ PN++ P +A YSE+ +E+R++ A + +
Sbjct: 275 EGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRR--A 332
Query: 327 FDGVIPKNAI 336
G IP +
Sbjct: 333 ITGRIPDSLK 342
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 9e-33
Identities = 71/321 (22%), Positives = 125/321 (38%), Gaps = 48/321 (14%)
Query: 49 LGRLADGKIEAAAA---VLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADL-G 104
+ + ++ V A A + L + + G + + + L
Sbjct: 36 VEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGA--GLSNEWMEKLPS 93
Query: 105 LRLI--------HVDTSRA---------------EEIADTVMALLLGLLRRTHLLARHAL 141
L +I VD +RA +++AD +AL+L +LRR R +
Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL-V 152
Query: 142 SASGWLGSVQ-PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGK 197
W Q PL + R +G++G RALA+R+ +F MSV Y++ +
Sbjct: 153 REGRWAAGEQLPLGHSPKGKR---IGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-- 207
Query: 198 GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257
+ DL SDV+++ A + T I++A LQ + P +VN
Sbjct: 208 ------VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGN 261
Query: 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRD 316
++D+ A+ + L GT+AG LD P + PN +++P + E M +
Sbjct: 262 VVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEF-HTTPNTVLMPHQGSATVETRMAMGK 320
Query: 317 KAISVLQTFFFDGVIPKNAIS 337
++ L F G N ++
Sbjct: 321 LVLANLAA-HFAGEKAPNTVN 340
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 1e-32
Identities = 64/294 (21%), Positives = 106/294 (36%), Gaps = 33/294 (11%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSAL--AADLGLRLI--------HVDTSRAEE-- 117
+ + +L + ++ + ++ I H+D +
Sbjct: 33 ITIDEMIETAKSVDALLITLN-EK-CRKEVIDRIPENIKCISTYSIGFDHIDLDACKARG 90
Query: 118 I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
I A+ M LLLG RR + + W G G +
Sbjct: 91 IKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM-IRTRSWPGWEPLELVGEK-LDNKT 148
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
LGI G + +ALA R+ F M + YFD A D+L+ LL+ S SL
Sbjct: 149 LGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSL 208
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
+ T ET N ++ + GA +VNT L+D+ V L G LA D G
Sbjct: 209 NAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 268
Query: 284 PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337
P E + ++PN + P + + ++ +A ++ F G A++
Sbjct: 269 PNINEGY-YDLPNTFLFPHIGSAATQAREDMAHQANDLIDA-LFGGADMSYALA 320
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 64/351 (18%), Positives = 126/351 (35%), Gaps = 63/351 (17%)
Query: 4 NRFPAAMPHRDNPTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAV 63
+ + + R + V+ + + + ++ L + L R +
Sbjct: 8 HHHSSGLVPRGSHMEAIGVLMMCPMSTYLEQE-------LDKRFKLFRYWTQPAQRDFLA 60
Query: 64 LLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADL-GLRLI--------HVDTSR 114
+ + ++ ++ D+ L L L ++ VD +
Sbjct: 61 -------------LQAESIRAVVGNSNA--GADAELIDALPKLEIVSSFSVGLDKVDLIK 105
Query: 115 A---------------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRR 159
+++AD + L+L +LRR ++ + W L
Sbjct: 106 CEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKY-VRRGAWKFGDFKLTTKFSG 164
Query: 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDTLNDLL 216
R +GI+G A+A R+ +F + YF P + ++ +L
Sbjct: 165 KR---VGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN--------TNYTYYGSVVELA 213
Query: 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276
+ SD++ + C +T ET IIN E + + P L+N G +D+ + L++G L G
Sbjct: 214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGA 273
Query: 277 ALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326
LD E P+ E + NV++LP + E + D + L+ F
Sbjct: 274 GLDVFEREPEVPEKL-FGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF 323
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 60/263 (22%), Positives = 91/263 (34%), Gaps = 35/263 (13%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D G+RL +V IA+ + L LLR + L A +
Sbjct: 82 IDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGK-VQAQLQAGDY--EKAGTF 138
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD---- 210
G + +G++G + F V+ +D +P D
Sbjct: 139 IG-KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP--------YPMKGDHPDFDYV 189
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L DL SDVI LH ++ IIN +KPGA ++NT L+D A+ L
Sbjct: 190 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS 249
Query: 271 GTLAGCALD--GAEGPQWMEAWV------------REMPNVLILPRSADYSEEVWMEIRD 316
G LAG +D E + MPNV++ P A Y+E +
Sbjct: 250 GKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNM-- 307
Query: 317 KAISVLQTF--FFDGVIPKNAIS 337
LQ F ++
Sbjct: 308 -VYFSLQHLVDFLTKGETSTEVT 329
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 57/261 (21%), Positives = 94/261 (36%), Gaps = 32/261 (12%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D A +LG + V IA+ + + LLR T + + V
Sbjct: 83 IDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAY-TTSRTAKKNF--KVDAFM 139
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM----D 210
+ R +G+VG R A +V+ DV F
Sbjct: 140 FS-KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDV--------FEIKGIEDYCTQV 190
Query: 211 TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270
+L+++L SD+I++H E ++ + L+ +K GA LVN QL+D AV + +
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 271 GTLAGCALD--GAEGPQWMEAW-------------VREMPNVLILPRSADYSEEVWMEIR 315
G L G D E + + V P VLI P Y++E +
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 316 DKAISVLQTFFFDGVIPKNAI 336
+ + L+ + N I
Sbjct: 311 EVSYQNLKD-LAETGDCPNKI 330
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-31
Identities = 61/294 (20%), Positives = 108/294 (36%), Gaps = 35/294 (11%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLG--LRLI--------HVDTSRA---- 115
L + R +++ + + + + + L L+ I H+D + A
Sbjct: 60 LTPSGIASRAHGAEVLFVTAT-EA-ITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLG 117
Query: 116 -----------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
+ A+ M L+L RR + R + + W G G G
Sbjct: 118 IKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRM-VRSGSWPGWGPTQLLG-MGLTGRR 175
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
LGI G RA+ATR+ F +++ Y + + A DTL+ LL ASD+ +
Sbjct: 176 LGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEG--AIYHDTLDSLLGASDIFLI 233
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
E ++ + + I GA ++N L++D A+ + L L LD
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293
Query: 284 PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337
P + R + N+ + P + E + I ++ +P N IS
Sbjct: 294 PAIDPRY-RSLDNIFLTPHIGSATHETRDAMGWLLIQGIEA-LNQSDVPDNLIS 345
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-31
Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 41/265 (15%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHL----LARHALSASGWLGSV 150
+D A A +LG ++ +V IA+ +LR+ +ARH L + +G
Sbjct: 84 IDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG-- 141
Query: 151 QPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--- 207
R R V+G+VG + F V+ +D+ F +
Sbjct: 142 -------REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI--------FRNPELEKK 186
Query: 208 --RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVK 265
+D+L+DL +DVISLH + +IN E + +K +VN L+D AV
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVI 246
Query: 266 QLLIDGTLAGCALD--GAEGPQWMEAWV------------REMPNVLILPRSADYSEEVW 311
+ L G + G A+D E + E W PNVL+ P++A Y+
Sbjct: 247 RGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAV 306
Query: 312 MEIRDKAISVLQTFFFDGVIPKNAI 336
+ KA +G + +
Sbjct: 307 RNMVVKAFDNNLE-LVEGKEAETPV 330
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 72/298 (24%), Positives = 112/298 (37%), Gaps = 38/298 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI--------HVDTSRA------ 115
L R RR R Q ++ DR L A LR+I + D
Sbjct: 34 LTREEILRRCRDAQAMMAF-MPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVW 92
Query: 116 ---------EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLG 166
A+ + L +GL R + + + G QP G +G
Sbjct: 93 LTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF-VRSGKFRG-WQPRFYG-TGLDNATVG 149
Query: 167 IVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226
+G A A+A R + ++ Y + + R++ ++L A+SD I L
Sbjct: 150 FLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVA-CSELFASSDFILLAL 208
Query: 227 AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD------- 279
+ +T+ ++NAE L ++PGA LVN ++D+ AV L G L G A D
Sbjct: 209 PLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDW 268
Query: 280 -GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
A+ PQ ++ + PN L P V +EI A + G P NA+
Sbjct: 269 ARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQ-ALAGERPINAV 325
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 85/304 (27%), Positives = 126/304 (41%), Gaps = 37/304 (12%)
Query: 58 EAAAAVLLHSLAYLPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI-------- 108
E V +H +LP+A +R+ ++ DR + GL++I
Sbjct: 19 ERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVE-DRIDAEVMDRAKGLKVIACYSVGVD 77
Query: 109 HVDTSRAEE--I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPL 153
HVD A E I AD +ALLL + RR A + W L
Sbjct: 78 HVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAY-ARDGLWKAWHPEL 136
Query: 154 CRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN 213
G +GL LG+VG +A+A R+L+F M V+Y F S L
Sbjct: 137 LLG-LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYPFLS-------LE 188
Query: 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273
+LL +DV+SLH +T ET +++N E L +K GA L+NT L+D A+ + L G L
Sbjct: 189 ELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHL 247
Query: 274 AGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP 332
G LD + P + +PN +I P + + A+ L +G P
Sbjct: 248 FGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLA-VLEGREP 306
Query: 333 KNAI 336
N +
Sbjct: 307 PNPV 310
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 56/258 (21%), Positives = 96/258 (37%), Gaps = 32/258 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSAL--AADLGLRLI--------HVDTSRAEE-- 117
+P +R + +LCL S D VD + AA L++I H+ ++
Sbjct: 42 IPAKELERGVAGAHGLLCLLS-DH-VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRG 99
Query: 118 I-------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164
I A+ ++LLL RR + GW G
Sbjct: 100 IRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEE-VKNGGWTSWKPLWLCG-YGLTQST 157
Query: 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISL 224
+GI+G +A+A R F + + + + + A + +L A SD I +
Sbjct: 158 VGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVS-TPELAAQSDFIVV 216
Query: 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG- 283
C++T T + N + Q +K A +N +++ + Q L G +A LD
Sbjct: 217 ACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 276
Query: 284 PQWMEAWVREMPNVLILP 301
P + + N +ILP
Sbjct: 277 PLPTNHPLLTLKNCVILP 294
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-28
Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 23/252 (9%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
VD A D + + V + +A+ V+ ++L L+R + GW ++
Sbjct: 127 VDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP-SHEWARKGGW--NIADCV 183
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214
+ +G V A+ R F + + Y D V T D
Sbjct: 184 SHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATRED 243
Query: 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274
+ DV++L+C + ET +IN E L+ K GA++VNT +L D AV + L G LA
Sbjct: 244 MYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 303
Query: 275 GCALD--GAEGPQWMEAWVREMPNVLILP------RSA--DYSEEVWMEIRDKAISVLQT 324
G A D + W R MP + P +A Y+ +
Sbjct: 304 GYAGDVWFPQPAPKDHPW-RTMPYNGMTPHISGTTLTAQARYAAGTREILEC-------- 354
Query: 325 FFFDGVIPKNAI 336
FF+G ++
Sbjct: 355 -FFEGRPIRDEY 365
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 3e-28
Identities = 67/296 (22%), Positives = 115/296 (38%), Gaps = 38/296 (12%)
Query: 71 LPRAA-QRRLRPYQLILCLGSSDRTVDSALAADLGLRLI--------HVDTSRAEE--I- 118
+PR ++++ ++ + S+R LR++ ++D A + I
Sbjct: 34 IPREILLKKVKEVDALVTM-LSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIY 92
Query: 119 ------------ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGM---RRCRGL 163
AD ALLL R R + + W G
Sbjct: 93 VTNTPDVLTDATADLAFALLLATARHVVKGDR-FVRSGEWKKRGVAWHPKWFLGYDVYGK 151
Query: 164 VLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDTLNDLLAASD 220
+GI+G +A+A R+ F M +LY+ E + ++ A L DLL SD
Sbjct: 152 TIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVEREL----NAEFKP-LEDLLRESD 206
Query: 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280
+ L +T ET +IN E L+ +K A L+N +++D A+ + L +G +AG LD
Sbjct: 207 FVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV 266
Query: 281 AEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336
E + + ++ NV++ P S + + L F G IP +
Sbjct: 267 FEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA-FKRGEIPPTLV 321
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-27
Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 23/252 (9%)
Query: 95 VDSALAADLGLRLIHVDTSR---AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ 151
VD L + V + A+ I+++V+A +L ++R H + A W
Sbjct: 72 VDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALP-- 129
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211
G L I G ++LA ++ + M V+ + G
Sbjct: 130 ---MTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVN-TTGH-PADHFHETVAFTA 184
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
D LA ++ I +T T + + E Q K L+N G +D A+ L
Sbjct: 185 TADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHH 244
Query: 272 TLAGCALD-------GAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQT 324
L+ ALD + P W + +VLI P + + +
Sbjct: 245 QLSMAALDVTEPEPLPTDHPLW------QRDDVLITPHISGQIAHFRATVFPIFAANFAQ 298
Query: 325 FFFDGVIPKNAI 336
F DG + +N +
Sbjct: 299 FVKDGTLVRNQV 310
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 4e-25
Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 34/193 (17%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ ALLL + + A + S G LGI+G R +A
Sbjct: 86 AEHAFALLLAHAKNILE-NNELMKAGIFRQS-----PTTL-LYGKALGILGYGGIGRRVA 138
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR---RMDTLNDLLAASDVISLHCAVTDETIQI 235
+ +F M V+ + ++ DL SD + + +TD+T +
Sbjct: 139 HLAKAFGMRVIAYTR--------SSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGM 190
Query: 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVRE-- 293
+N+ L + + +VN + ++ + L + + D W E
Sbjct: 191 VNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSD---------VWWNEPE 241
Query: 294 -----MPNVLILP 301
+ N ++ P
Sbjct: 242 ITETNLRNAILSP 254
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 7e-25
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 12/215 (5%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D D G+ ++ S A+ AL++ RR +L W S
Sbjct: 89 IDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQ-YVASLKHGAWQQSGLKST 146
Query: 155 RGMRRC------RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR 208
+G LGI G + +A +F M+VL + E +
Sbjct: 147 TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWG-RENSKERARADGFAV 205
Query: 209 MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
++ + L SDV+S+H + DET II L +KP A VNT ++L+++ + L
Sbjct: 206 AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTAL 265
Query: 269 IDGTLAGCALD--GAEGPQWMEAWVREMPNVLILP 301
G A+D E M N + P
Sbjct: 266 NRGRPGMAAIDVFETEPILQGHTL-LRMENCICTP 299
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGS--VQP 152
+D A G+ + V +E +A+ + L++ L+R+ H A + W +
Sbjct: 78 IDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHY-ADKFIRRGEWESHAKIWT 136
Query: 153 LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD-- 210
+ + G +GI+G A +A+A R + F + + Y+ K + + +
Sbjct: 137 GFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWS-RHRK-----VNVEKELKAR 190
Query: 211 --TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
+++LL SD++ L +T +T IIN E ++ ++ G +LVN G L+D+ AV + +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAI 249
Query: 269 IDGTLAGCALD-GAEGPQWMEAWVREMPNVLILP 301
G L G A D + P + ++ P
Sbjct: 250 KQGKLKGYATDVFEKEPVREHELFKYEWETVLTP 283
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 10/211 (4%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
+D AA GL + V S +A+ + +L L+R + + W +V +
Sbjct: 100 IDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVP-GYNQVVKGEW--NVAGIA 156
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD---VPEGKGKVTFPSAARRMDT 211
G +G VG + L R F ++LY D + K T A+ ++
Sbjct: 157 YRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET---GAKFVED 213
Query: 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271
LN++L DVI ++ +T++T + N E + +K G +VN +++ AV + G
Sbjct: 214 LNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESG 273
Query: 272 TLAGCALD-GAEGPQWMEAWVREMPNVLILP 301
+ G + D P + R MPN + P
Sbjct: 274 HIGGYSGDVWDPQPAPKDHPWRYMPNQAMTP 304
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 2e-23
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 24/190 (12%)
Query: 122 VMALLLGLLRRTHLLARHALSASG-W----LGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
V+ LL LLR + +A + G GS + RG LGI+G
Sbjct: 110 VIGELLLLLR--GVPEANAKAHRGVGNKLAAGSFE--------ARGKKLGIIGYGHIGTQ 159
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
L + S M V ++D+ A ++ L+DLL SDV+SLH T ++
Sbjct: 160 LGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMM 215
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWV--- 291
A+ + +KPG+ L+N ++D A+ L LAG A+D E + +
Sbjct: 216 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPL 275
Query: 292 REMPNVLILP 301
E NVL+ P
Sbjct: 276 AEFDNVLLTP 285
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-23
Identities = 52/190 (27%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 122 VMALLLGLLRRTHLLARHALSASG-W----LGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
V+ ++ L+R + R + +G W +GS + RG LGIVG
Sbjct: 121 VIGEIIMLMR--RIFPRSVSAHAGGWEKTAIGSRE--------VRGKTLGIVGYGNIGSQ 170
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
+ + S M+V Y+D + + +L++LL SDV+SLH + T ++I
Sbjct: 171 VGNLAESLGMTVRYYDTSDKLQYGN----VKPAASLDELLKTSDVVSLHVPSSKSTSKLI 226
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWV--- 291
L+ +K GAFL+N +D A+ ++L +G LAG A+D E E +
Sbjct: 227 TEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPL 286
Query: 292 REMPNVLILP 301
+ + NV++ P
Sbjct: 287 QGLENVILTP 296
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 4e-22
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 10/165 (6%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ V+ +L L+R A + W V + + G + +G +
Sbjct: 124 AEHVVMTMLVLVRNFVP-AHEQIINHDW--EVAAIAKDAYDIEGKTIATIGAGRIGYRVL 180
Query: 179 TRSLSFKMSVLYFD----VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
R + F L + +P+ + ARR++ + +L+A +D+++++ + T
Sbjct: 181 ERLVPFNPKELLYYDYQALPKDAEEKV---GARRVENIEELVAQADIVTVNAPLHAGTKG 237
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
+IN E L K GA+LVNT + V L G L G D
Sbjct: 238 LINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGD 282
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 2e-21
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ + L+ + R+ A + W G+ G +GI+G +A
Sbjct: 104 AELAVGLMFSVARKIAF-ADRKMREGVWAKK---EAMGIE-LEGKTIGIIGFGRIGYQVA 158
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDLLAASDVISLHCAVTDET 232
+ + M++L +D +P+ R + L LL SDV+++H + + T
Sbjct: 159 KIANALGMNILLYDP--------YPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVEST 210
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-GAEGPQWMEAWV 291
+IN E L+ +K A L+NT ++D A+ + L +G +AG LD E P + +
Sbjct: 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPL 270
Query: 292 REMPNVLILP 301
+ NV++ P
Sbjct: 271 TKFDNVVLTP 280
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 3e-21
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGW---LGSVQ 151
+D+ A +++++ + + + + L++ R+ + + + + G
Sbjct: 82 IDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT-SMALAKSGIFKKIEGL-- 138
Query: 152 PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD- 210
G +GIVG + + + M VL +D+ + A +++
Sbjct: 139 -------ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDI------LDIREKAEKINA 185
Query: 211 ---TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267
+L +LL SDVISLH V+ + II+ + +K +VNT + ++ A+
Sbjct: 186 KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDY 245
Query: 268 LIDGTLAGCALD 279
+ G + A D
Sbjct: 246 IKKGKVYAYATD 257
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 19/167 (11%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ +++ L R+ A ++ W G G LGI+G R +A
Sbjct: 127 AELTCGMIMCLARQIPQ-ATASMKDGKWERK---KFMGTE-LNGKTLGILGLGRIGREVA 181
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAAR------RMDTLNDLLAASDVISLHCAVTDET 232
TR SF M + +D S + L ++ D I++H + T
Sbjct: 182 TRMQSFGMKTIGYDP--------IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 233
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
++N K G +VN ++D+ A+ + L G AG ALD
Sbjct: 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALD 280
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 5e-20
Identities = 71/295 (24%), Positives = 121/295 (41%), Gaps = 46/295 (15%)
Query: 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLC 154
VD A G+ +++ TS A+ +ALLL R+ A +L W S
Sbjct: 80 VDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPA-ADASLREHTWKRS---SF 135
Query: 155 RGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD--VPEGKGKVTFPSAARRMD-- 210
G G +G+VG + +A R +F V+ +D V + A ++
Sbjct: 136 SGTE-IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR--------AAQLGIE 186
Query: 211 --TLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLL 268
+L+DLLA +D IS+H T ET +I+ E L KPG +VN L+D+ A+ +
Sbjct: 187 LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAI 246
Query: 269 IDGTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSADYSEE----VWMEIRDKAISVL 322
G + LD E ++ + E+ V++ P + E ++ + L
Sbjct: 247 TGGHVRAAGLDVFATEPCT--DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 304
Query: 323 QTFFFDGVIPKNAISDTEGCEN----EIDDEIEQYNKLDKVSTLEGSVGGQLTDD 373
G +A+ N +++E+ + L V L G + G L+D+
Sbjct: 305 -----AGEFVPDAV-------NVGGGVVNEEVAPWLDL--VRKL-GVLAGVLSDE 344
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 55/212 (25%)
Query: 95 VDSALAADLGLRLI--------HVDTSRAEE---------------IADTVMALLLGLLR 131
V+ +L + + + HVD + ++ + + V + LL L
Sbjct: 52 VNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111
Query: 132 RTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYF 191
R G+ R +GIVG L TR + + L
Sbjct: 112 RD-----------GFS------------LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC 148
Query: 192 DVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPG 247
D P TL++L+ +DV++ H + + T+ + + ++ +KPG
Sbjct: 149 DPPRAA-----RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPG 203
Query: 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279
A L+N ++D+ A+ L G LD
Sbjct: 204 AILINACRGPVVDNAALLARLNAGQPLSVVLD 235
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 63/288 (21%), Positives = 96/288 (33%), Gaps = 50/288 (17%)
Query: 33 LEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92
L+ L + ++ EA + + A A +L +
Sbjct: 22 LKAAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLS---WFQSTYAG- 77
Query: 93 RTVDSALAADL--GLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV 150
VD L A +L +V +++ V LL L+R+ L W
Sbjct: 78 --VDVLLDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQ-KQRLW---- 130
Query: 151 QPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL----------YFDVPEGKGKV 200
Q + +G L I+G + + +A F M VL FD
Sbjct: 131 QS--HPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQ---- 184
Query: 201 TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260
+ LN +LA +DVI T ET + A +H KPGA L N G ++
Sbjct: 185 --------LPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 261 DCAVKQLLIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILP 301
+ + L G L LD A+ P W PN++I P
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLW------GQPNLIITP 278
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-17
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD----TLNDLL 216
G+VG L VL D P AR D +L LL
Sbjct: 115 AERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---------QAREPDGEFVSLERLL 165
Query: 217 AASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272
A +DVISLH + + T +++ L ++PG +LVN ++D+ A+++LL G
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225
Query: 273 LAGCALD 279
ALD
Sbjct: 226 DLEVALD 232
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-17
Identities = 52/281 (18%), Positives = 85/281 (30%), Gaps = 56/281 (19%)
Query: 46 HVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLG-------SSDRTVDSA 98
H + G A L + P R + + LG S
Sbjct: 28 HARVREWKVGDNNPADYAL----VWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEM 83
Query: 99 LAADLGL-RLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGM 157
L A + L RL DT ++ + ++ +L RR A W +P
Sbjct: 84 LDASIPLFRL--EDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQAL-W----KP--LPE 134
Query: 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVL----------YFDVPEGKGKVTFPSAAR 207
+GI+G +A ++ + + G
Sbjct: 135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG----------- 183
Query: 208 RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267
+ L L + V+ T +T+ IIN+E L + GA+++N + + +
Sbjct: 184 -REELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAA 242
Query: 268 LIDGTLAGCALD-------GAEGPQWMEAWVREMPNVLILP 301
L G L G LD E P W P V + P
Sbjct: 243 LDSGKLKGAMLDVFSQEPLPQESPLW------RHPRVAMTP 277
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 46/367 (12%), Positives = 100/367 (27%), Gaps = 99/367 (26%)
Query: 319 ISVLQTFF---FDGV----IPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVGGQLT 371
+SV + F FD +PK+ +S E ID I + + L ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEE-----IDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 372 DDIQVSPEDSLKKGISW--------SRDSPSQLQGSGFSQNSANTKSDGR--RSRSGKKA 421
+ +Q E+ L+ + R PS + + + +D + + +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQ-PS-MMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 422 KKRHARQKSLQKPDDP--------------SALEKESTSHKEDDTAMSG-----TDQASS 462
+ +++L + P + + + + M
Sbjct: 135 QPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---LK 190
Query: 463 RCASPEELRSRKTPIESIQESTSKKLSRSSKKLSEVSGETLKDGYVVALYARDRPALHIS 522
C SPE + +E +Q KL + + + + +
Sbjct: 191 NCNSPETV------LEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 523 RQRHKGG---------GWILETMSN-----VTKRDPA-AQFLICKSKDTIGLRSFTAG-- 565
+ ++ + +T R FL + I L +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 566 -GKLLQINRRMEFVFASHSFDAWESWAIEG-PLEECRLVNCRNPLAFLDVRIEILAAVGE 623
++ + + + P E NP + I+A
Sbjct: 300 PDEVKSL-------LLK-----YLDCRPQDLPREVLTT----NPRR-----LSIIAES-I 337
Query: 624 DDGITRW 630
DG+ W
Sbjct: 338 RDGLATW 344
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 85/515 (16%), Positives = 154/515 (29%), Gaps = 156/515 (30%)
Query: 210 DTLNDLLAASDVISLHCA-VTDETIQIINAECLQHI--KPGAFLVNTGSSQLLDDCAVKQ 266
D L+ A V + C V D I++ E + HI A +G+ +L KQ
Sbjct: 20 DILSVFEDAF-VDNFDCKDVQDMPKSILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQ 75
Query: 267 LLIDGTLAGCALDGAEGP--QW-MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQ 323
+ ++ ++ M E R +++E RD+ + Q
Sbjct: 76 ----EEMVQKFVEEVLRINYKFLMSPIKTE-------QRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 324 TFFFDGVIPKNAISDTEGCENEIDDEIEQYNKLDKVSTLEGSVG-GQ--LTDDIQVSPED 380
F K +S + ++ + + V ++G +G G+ + + V
Sbjct: 125 VF------AKYNVSRLQ-PYLKLRQALLELRPAKNV-LIDGVLGSGKTWVA--LDVCLSY 174
Query: 381 SLKK----GISW----SRDSPS----QLQ------GSGFSQNSANTKSDGRRSRSGKKAK 422
++ I W + +SP LQ ++ S ++ + R S +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 423 KRHARQKSLQKP----DD---PSALEK----------------------ESTSHKEDDTA 453
+R + K + + A +T+H D
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 454 MSG--TDQASSRCA-----SPEELRSRKT---P--IESIQESTSKKLSR-------SSKK 494
D+ S P++L P + I ES L+ + K
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 495 LS---EVSGETLKDGYVVALYARD----RPALHISRQRHKGGGWILETM-SNVTKRDPA- 545
L+ E S L+ ++ P+ HI +L + +V K D
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTI-------LLSLIWFDVIKSDVMV 406
Query: 546 -AQFLICKS---KD----TIGLRSFTAGGKLLQINRRMEFVFASHSFDAWESWAIEGPLE 597
L S K TI + S L++ ++E +A H
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSI-----YLELKVKLENEYALHR-------------- 447
Query: 598 ECRLVNCRNPLAFLDVRIEILAAVGEDDGITRWLD 632
+V+ N D DD I +LD
Sbjct: 448 --SIVDHYNIPKTFD----------SDDLIPPYLD 470
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 72/407 (17%), Positives = 131/407 (32%), Gaps = 131/407 (32%)
Query: 73 RAAQRRL---RPYQ---LILCLGSSD-----RTVDSALAADLGLR-LIHVDTSRAEEIAD 120
+A RRL +PY+ L+L + + A +L + L+ T+R +++ D
Sbjct: 231 QAELRRLLKSKPYENCLLVL-----LNVQNAKAWN---AFNLSCKILL---TTRFKQVTD 279
Query: 121 TVMALLLGLLRRTHLLARH-----------ALSASGWLG-SVQPLCRGMRRCRGLVLGIV 168
+ A TH+ H +L +L Q L R + L I+
Sbjct: 280 FLSA-----ATTTHISLDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSII 333
Query: 169 GRSASARALATR------------SLSFKMSVLYFDVPEGKGK----VTFPSAAR----- 207
S R + + S+ + E + FP +A
Sbjct: 334 A--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 208 ------------RMDTLNDLLAASDV--------ISLHCAVTDETIQIINAECLQHIKPG 247
M +N L S V IS+ + +++ N L H
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRS-- 448
Query: 248 AFLV---NTGSSQLLDDCAVKQLLIDGTLA---GCALDGAEGPQWMEAWVREMPNVLILP 301
+V N + DD L D G L E P+ M V +
Sbjct: 449 --IVDHYNIPKTFDSDDLIPPYL--DQYFYSHIGHHLKNIEHPERMT----LFRMVFL-- 498
Query: 302 RSADYSEEVWME--IRDKAI------SVLQTFFFDGVIPKNAISDTEGCENEIDDEIEQY 353
D+ ++E IR + S+L T K I D + + + I +
Sbjct: 499 ---DFR---FLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 354 NKLDKVSTLEGSVGGQLTDDIQVS---PEDSLKKGISWSRDSPSQLQ 397
L K+ E + + TD ++++ ++++ + ++ Q+Q
Sbjct: 552 --LPKIE--ENLICSKYTDLLRIALMAEDEAIFE------EAHKQVQ 588
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 9e-05
Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 7/99 (7%)
Query: 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLAA 218
G + ++G ++A + + V + L
Sbjct: 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRD 213
Query: 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257
DV ++ A L + F+++ S
Sbjct: 214 VDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKP 247
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 632 | |||
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 99.97 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 99.97 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.93 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.89 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.86 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.85 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.74 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.73 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.65 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.63 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.59 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.57 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.53 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.52 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.35 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.32 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.3 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.27 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.27 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.22 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.21 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.2 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.19 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.16 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.16 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.14 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.13 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.13 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.09 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.09 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 99.08 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 99.05 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.05 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.03 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.01 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 98.99 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 98.98 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.97 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.97 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.96 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 98.95 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.94 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.94 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.92 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.91 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.91 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.88 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.84 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.33 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.82 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.81 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.81 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.81 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.8 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.76 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.75 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.73 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.68 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.67 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.64 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.63 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.61 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.57 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.57 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.56 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.56 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.55 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.52 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.51 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.48 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.47 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.47 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.42 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.42 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.4 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.39 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.38 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.36 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.34 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.32 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.3 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.3 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.28 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.28 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.26 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.25 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.22 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.22 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.21 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.21 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.2 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 98.19 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.18 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.18 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 98.16 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.16 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 98.15 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 98.14 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.14 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.14 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 98.14 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.14 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 98.13 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 98.13 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 98.12 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.12 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 98.11 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.1 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 98.1 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 98.09 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 98.07 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.03 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 97.97 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.96 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.89 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.86 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.84 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.84 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.78 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.77 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.71 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.7 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.69 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.66 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.64 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.62 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.58 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.58 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 97.57 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.55 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.53 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.51 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.51 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.5 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.5 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.49 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.49 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 97.47 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.43 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.43 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.42 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.4 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.39 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.36 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.32 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.29 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.27 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.27 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.26 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.22 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 97.2 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.18 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.18 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.16 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.12 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.1 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.08 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.07 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 97.06 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.06 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.04 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.03 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.02 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.01 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.0 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.0 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.98 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 96.98 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.97 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.96 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.95 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 96.93 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.93 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.92 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.9 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.89 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 96.86 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.86 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.83 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 96.81 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.8 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 96.76 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.75 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.75 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 96.74 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.72 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 96.69 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.69 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.65 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.65 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 96.6 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.56 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.55 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.55 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.55 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.53 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.51 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.48 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.47 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.45 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 96.45 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.45 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.44 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.43 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.41 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.41 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 96.38 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 96.38 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.38 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.37 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.36 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.35 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.32 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.3 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.3 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.28 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.27 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 96.26 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.26 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 96.23 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 96.22 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.21 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.19 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.18 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.18 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.18 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 96.15 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.12 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.11 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.1 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.09 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.07 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.06 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 96.06 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.06 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 96.04 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.02 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.99 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.97 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 95.94 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 95.91 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.91 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.9 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.84 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 95.81 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.79 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 95.79 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.78 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 95.71 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.68 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.67 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.66 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.66 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 95.64 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 95.62 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.6 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.58 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 95.57 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 95.57 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 95.54 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 95.53 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 95.5 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.48 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 95.47 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.46 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 95.46 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.44 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 95.41 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.4 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 95.4 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 95.39 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.35 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 95.33 | |
| 3on5_A | 362 | BH1974 protein; structural genomics, joint center | 95.32 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.25 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 95.24 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.24 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 95.24 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 95.24 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.24 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 95.22 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 95.22 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.21 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.2 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.18 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 95.18 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.18 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 95.17 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.15 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.15 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 95.13 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.13 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 95.1 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 95.09 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 95.07 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.07 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 95.03 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.02 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.01 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.01 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.0 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.0 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 94.99 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 94.98 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 94.97 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 94.97 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.96 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 94.96 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.94 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 94.9 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.9 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 94.9 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 94.88 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 94.88 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 94.83 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 94.77 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.76 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 94.76 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.75 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.75 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 94.74 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 94.72 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 94.71 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.7 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.62 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 94.62 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 94.6 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.6 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 94.57 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.57 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.56 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 94.56 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 94.56 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.54 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.51 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 94.5 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 94.5 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.48 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.44 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.43 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.41 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 94.4 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.4 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 94.4 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 94.38 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.37 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 94.36 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 94.35 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.34 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 94.31 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.31 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 94.31 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 94.25 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.25 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 94.23 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.23 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.21 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 94.19 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 94.19 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.18 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.17 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 94.16 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 94.14 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 94.13 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.11 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 94.1 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 94.1 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 94.1 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 94.1 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 94.08 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 94.07 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 94.07 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 94.06 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 94.03 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.03 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 94.03 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 94.01 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 93.98 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 93.97 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 93.95 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 93.95 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 93.94 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 93.93 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.9 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.89 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 93.87 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.85 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 93.85 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 93.83 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 93.83 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 93.82 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 93.81 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 93.8 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 93.8 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.77 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 93.75 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.74 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.73 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 93.72 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.69 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.68 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 93.65 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 93.62 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 93.61 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 93.6 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 93.57 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.54 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 93.51 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 93.45 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.43 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 93.42 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.41 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 93.41 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 93.4 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 93.4 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.38 | |
| 4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 93.37 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.32 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 93.32 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 93.3 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 93.28 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 93.25 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 93.23 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 93.2 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 93.17 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 93.17 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 93.16 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 93.15 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 93.15 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 93.13 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.12 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 93.09 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 93.08 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 93.06 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 93.03 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.97 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 92.95 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 92.94 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 92.93 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 92.87 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.84 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.8 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.78 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 92.78 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 92.76 | |
| 1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 92.71 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.71 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 92.68 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 92.68 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 92.67 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.66 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 92.65 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 92.64 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 92.59 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 92.58 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 92.56 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 92.56 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 92.55 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.54 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.53 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.52 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 92.51 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.51 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 92.5 |
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-64 Score=529.27 Aligned_cols=299 Identities=22% Similarity=0.348 Sum_probs=259.6
Q ss_pred CchHHhhccCCc-eEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEE
Q 006758 31 CVLEQDSLAGVA-LVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIH 109 (632)
Q Consensus 31 ~~~e~e~L~~la-eV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtN 109 (632)
.++..+.|+++. ++...+...+++..+.+||+++++...++++++++++|+||+|+++|+|+||||+++|+++||.|+|
T Consensus 13 ~p~~~e~l~~~~~~~~~~~~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n 92 (334)
T 3kb6_A 13 VPFYQEALKDLSLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTH 92 (334)
T ss_dssp HHHHHHHTTTSCEEECSSCGGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEEC
T ss_pred CHHHHHHHHhCCcEEEeCCcccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEE
Confidence 345567788773 2222233445566788999999998889999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEE
Q 006758 110 VDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVL 189 (632)
Q Consensus 110 vpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~ 189 (632)
+|++++.+||||+++++|+++|++..+... .+.+.|..... ...++|.|+||||||+|+||+.+|+++++|||+|+
T Consensus 93 ~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~-~~~~~~~~~~~---~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~ 168 (334)
T 3kb6_A 93 IPAYSPESVAEHTFAMILTLVKRLKRIEDR-VKKLNFSQDSE---ILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVL 168 (334)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCGG---GCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred CCCcCcHHHHHHHHHHHHHHhhcccccccc-ccccccccccc---cccceecCcEEEEECcchHHHHHHHhhcccCceee
Confidence 999999999999999999999999998886 47778764322 23468999999999999999999999999999999
Q ss_pred EECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 190 YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 190 ~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+||++..... ......+.+|+++|++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++||+
T Consensus 169 ~~d~~~~~~~---~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~ 245 (334)
T 3kb6_A 169 CYDVVKREDL---KEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQ 245 (334)
T ss_dssp EECSSCCHHH---HHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred ecCCccchhh---hhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHH
Confidence 9998764321 1122345799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceEEeecCCC-CCCCCc---------------cccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006758 270 DGTLAGCALDGAEG-PQWMEA---------------WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (632)
Q Consensus 270 sg~I~GAaLDVfE~-P~~~~~---------------pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~ 333 (632)
+|+|+||+||||++ |++.++ |||.+|||++|||+||+|.+++.++.+.+++||.+|+ +|++|.
T Consensus 246 ~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l-~Ge~~~ 324 (334)
T 3kb6_A 246 RGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFV-KGDLEQ 324 (334)
T ss_dssp TTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH-HTCGGG
T ss_pred hCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHH-cCCCCc
Confidence 99999999999997 544333 6899999999999999999999999999999999997 798766
Q ss_pred cccc
Q 006758 334 NAIS 337 (632)
Q Consensus 334 nvVn 337 (632)
..+|
T Consensus 325 ~~~n 328 (334)
T 3kb6_A 325 IKGN 328 (334)
T ss_dssp GGGG
T ss_pred CCCC
Confidence 5444
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-62 Score=520.82 Aligned_cols=314 Identities=21% Similarity=0.256 Sum_probs=274.4
Q ss_pred CCCCEEEEeCCCCCCchHHhhccCCceEEecCC-CCCcc----cccccceEEEEecCCCCCHHHHhcC-CCceEEEEecc
Q 006758 17 TPLPSVVALNCIEDCVLEQDSLAGVALVEHVPL-GRLAD----GKIEAAAAVLLHSLAYLPRAAQRRL-RPYQLILCLGS 90 (632)
Q Consensus 17 ~~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~-~~l~e----~~i~dAdaIli~s~~~L~~evL~~l-p~LK~I~~~ga 90 (632)
+++|+|++...+. +...+.|+...++..... ..++. +.++++|+++++...++++++++++ |+||+|++.|+
T Consensus 26 ~~~~kvlv~~~~~--~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~ 103 (345)
T 4g2n_A 26 HPIQKAFLCRRFT--PAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSV 103 (345)
T ss_dssp -CCCEEEESSCCC--HHHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSS
T ss_pred CCCCEEEEeCCCC--HHHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCC
Confidence 5689999987643 334566666667766432 22332 3578999999987779999999998 79999999999
Q ss_pred cCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeC
Q 006758 91 SDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGR 170 (632)
Q Consensus 91 G~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGl 170 (632)
|+|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++. .+.+.|..... ......+|+|+||||||+
T Consensus 104 G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~-~r~g~W~~~~~-~~~~g~~l~gktvGIIGl 181 (345)
T 4g2n_A 104 GYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRM-VRSGSWPGWGP-TQLLGMGLTGRRLGIFGM 181 (345)
T ss_dssp CCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHH-HHTTCCCCCCT-TTTCBCCCTTCEEEEESC
T ss_pred cccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCcccCc-ccccccccCCCEEEEEEe
Confidence 9999999999999999999999999999999999999999999999987 58899974321 112246899999999999
Q ss_pred ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEE
Q 006758 171 SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFL 250 (632)
Q Consensus 171 G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvL 250 (632)
|.||+.+|++|++|||+|++||++...... ..+....++|++++++||+|++|||+|++|+++|+++.|+.||+|++|
T Consensus 182 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~--~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gail 259 (345)
T 4g2n_A 182 GRIGRAIATRARGFGLAIHYHNRTRLSHAL--EEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVV 259 (345)
T ss_dssp SHHHHHHHHHHHTTTCEEEEECSSCCCHHH--HTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEE
T ss_pred ChhHHHHHHHHHHCCCEEEEECCCCcchhh--hcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEE
Confidence 999999999999999999999998643321 124555579999999999999999999999999999999999999999
Q ss_pred EEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 251 VNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 251 INvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
||+|||++||++||++||++|+|+||+||||++||+.++|||++|||++|||+|++|.++..++...+++||.+|+ .|+
T Consensus 260 IN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l-~g~ 338 (345)
T 4g2n_A 260 INISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALN-QSD 338 (345)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred EECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHH-cCC
Confidence 9999999999999999999999999999999986688999999999999999999999999999999999999996 888
Q ss_pred CCCcccc
Q 006758 331 IPKNAIS 337 (632)
Q Consensus 331 ~p~nvVn 337 (632)
.|.|+|+
T Consensus 339 ~~~~~V~ 345 (345)
T 4g2n_A 339 VPDNLIS 345 (345)
T ss_dssp CCTTBCC
T ss_pred CCCCCcC
Confidence 8999886
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-61 Score=504.64 Aligned_cols=314 Identities=22% Similarity=0.244 Sum_probs=274.0
Q ss_pred CCEEEEeCCCCCCchHHhhccCCceEEecCCC-CCcc----cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCC
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RLAD----GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDR 93 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~-~l~e----~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D 93 (632)
+|+|++...+ .+...+.|+...++...+.. .++. +.+.++|++++....++++++++++|+||+|++.|+|+|
T Consensus 2 ~~kvlv~~~~--~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d 79 (330)
T 4e5n_A 2 LPKLVITHRV--HEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFD 79 (330)
T ss_dssp CCEEEECSCC--CHHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCT
T ss_pred CCEEEEecCC--CHHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCccc
Confidence 6888888754 34456778887777665422 2222 357889999997777999999999999999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChh
Q 006758 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSAS 173 (632)
Q Consensus 94 ~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~I 173 (632)
|||+++|+++||.|+|+|++++.+||||+++++|+++|++..+++. .+.+.|.... + .....+|.|+||||||+|.|
T Consensus 80 ~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~w~~~~-~-~~~~~~l~g~tvGIIG~G~I 156 (330)
T 4e5n_A 80 NFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF-VRSGKFRGWQ-P-RFYGTGLDNATVGFLGMGAI 156 (330)
T ss_dssp TBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCSCC-S-CCCCCCSTTCEEEEECCSHH
T ss_pred ccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHH-HHhCCccccC-c-cccCCccCCCEEEEEeeCHH
Confidence 9999999999999999999999999999999999999999999887 5788886321 1 12236899999999999999
Q ss_pred hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 174 ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 174 G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
|+.+|++|++|||+|++||++..........+.. ..++++++++||+|++|||+|++|+++|+++.|+.||+|++|||+
T Consensus 157 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ 235 (330)
T 4e5n_A 157 GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235 (330)
T ss_dssp HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCce-eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEEC
Confidence 9999999999999999999986332212223343 458999999999999999999999999999999999999999999
Q ss_pred CCChhhcHHHHHHHHHcCCcceEEeecCCC--------CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHH
Q 006758 254 GSSQLLDDCAVKQLLIDGTLAGCALDGAEG--------PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTF 325 (632)
Q Consensus 254 gRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--------P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~f 325 (632)
|||+++|++||+++|++|+|+||+||||++ |++.++|||++|||++|||+||+|.++..++...+++||.+|
T Consensus 236 arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~ 315 (330)
T 4e5n_A 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQA 315 (330)
T ss_dssp SCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 447899999999999999999999999999999999999999
Q ss_pred HHcCCCCCccccCC
Q 006758 326 FFDGVIPKNAISDT 339 (632)
Q Consensus 326 L~~G~~p~nvVn~~ 339 (632)
+ +|+.|.|+||++
T Consensus 316 ~-~g~~~~~~vn~~ 328 (330)
T 4e5n_A 316 L-AGERPINAVNRL 328 (330)
T ss_dssp H-TTSCCTTBSSCC
T ss_pred H-cCCCCCCccCCC
Confidence 6 888899999975
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-61 Score=509.29 Aligned_cols=310 Identities=24% Similarity=0.296 Sum_probs=239.9
Q ss_pred CCCCCEEEEeCCCCCCchHHhhccCCceEEecCCCCCc---ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 16 PTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLA---DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 16 ~~~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~---e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
+|++|+|++...+. +...+.|+...++..++..... .+.+.++|++++++..++++++++++|+||+|++.|+|+
T Consensus 27 ~~~~~~vl~~~~~~--~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~ 104 (340)
T 4dgs_A 27 RNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGT 104 (340)
T ss_dssp ------CEECSCCC--HHHHHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCC
T ss_pred CCCCCEEEEECCCC--HHHHHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCc
Confidence 46799999987643 3445566655565544221111 123478999999888899999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCC-CCCCCCccccccCcEEEEEeCC
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGS-VQPLCRGMRRCRGLVLGIVGRS 171 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~-~~~~~~~~~~L~GktVGIIGlG 171 (632)
|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++. .+.+.|... ..+ ..++|+|+||||||+|
T Consensus 105 d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~-~~~g~W~~~~~~~---~~~~l~gktiGIIGlG 180 (340)
T 4dgs_A 105 DKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL-VREGRWAAGEQLP---LGHSPKGKRIGVLGLG 180 (340)
T ss_dssp TTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCC------C---CCCCCTTCEEEEECCS
T ss_pred cccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHH-HhcCCcccccCcC---ccccccCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999987 588999753 111 2368999999999999
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEE
Q 006758 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (632)
Q Consensus 172 ~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI 251 (632)
.||+.+|+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++|+++.|+.||+|++||
T Consensus 181 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailI 255 (340)
T 4dgs_A 181 QIGRALASRAEAFGMSVRYWNRSTLSGV-----DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVV 255 (340)
T ss_dssp HHHHHHHHHHHTTTCEEEEECSSCCTTS-----CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCccccc-----CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEE
Confidence 9999999999999999999999875421 23446799999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC
Q 006758 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (632)
Q Consensus 252 NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~ 331 (632)
|++||++||++||++||++|+|+||+||||++||.+.+|||++|||++|||+|++|.++..++...+++||.+|+ .|+.
T Consensus 256 N~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~-~g~~ 334 (340)
T 4dgs_A 256 NVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHF-AGEK 334 (340)
T ss_dssp ECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHH-TTSC
T ss_pred ECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 999999999999999999999999999999985555679999999999999999999999999999999999997 8888
Q ss_pred CCcccc
Q 006758 332 PKNAIS 337 (632)
Q Consensus 332 p~nvVn 337 (632)
|.|.||
T Consensus 335 ~~~~Vn 340 (340)
T 4dgs_A 335 APNTVN 340 (340)
T ss_dssp CTTBC-
T ss_pred CCCCcC
Confidence 999987
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-61 Score=504.30 Aligned_cols=311 Identities=17% Similarity=0.209 Sum_probs=263.0
Q ss_pred EEEEeCCCCCCchHHhhccCC-ceEEecCCCCCcccccccceEEEEecCCCCCHHHH-hcCCCceEEEEecccCCccchH
Q 006758 21 SVVALNCIEDCVLEQDSLAGV-ALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQ-RRLRPYQLILCLGSSDRTVDSA 98 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~l-aeV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL-~~lp~LK~I~~~gaG~D~VD~~ 98 (632)
+|++...+. +...+.|+.. .+++.....++..+.+.++|+++++.. ++ ++++ +++|+||||++.|+|+|+||++
T Consensus 3 kil~~~~~~--~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ad~l~~~~~-~~-~~~l~~~~~~Lk~I~~~~~G~d~id~~ 78 (324)
T 3evt_A 3 LVLMAQATK--PEQLQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHP-LL-KTILARPTNQLKFVQVISAGVDYLPLK 78 (324)
T ss_dssp EEEECSCCC--HHHHHHHHHHCTTCEEEETTSCCTTTGGGEEEEESCCT-HH-HHHHHSTTCCCCEEECSSSCCTTSCHH
T ss_pred EEEEecCCC--HHHHHHHHhhCCCeEEecCCccChHHhCCcEEEEECCc-Ch-HHHHHhhCCCceEEEECCccccccCHH
Confidence 567766543 2334444432 122222333355567889998887754 46 8888 7899999999999999999999
Q ss_pred HHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHH-HHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHH
Q 006758 99 LAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLL-ARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177 (632)
Q Consensus 99 aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~-~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~v 177 (632)
+|+++||.|+|+||+++.+||||+++++|+++|++..+ .+. .+.+.|.... ..++|.|+||||||+|.||+.+
T Consensus 79 ~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~-~~~~~W~~~~-----~~~~l~gktvGIiGlG~IG~~v 152 (324)
T 3evt_A 79 ALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ-RGARQWALPM-----TTSTLTGQQLLIYGTGQIGQSL 152 (324)
T ss_dssp HHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH-TTTCCSSCSS-----CCCCSTTCEEEEECCSHHHHHH
T ss_pred HHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHH-HhcCCcccCC-----CCccccCCeEEEECcCHHHHHH
Confidence 99999999999999999999999999999999999998 665 5789997542 2468999999999999999999
Q ss_pred HHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 178 A~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
|++|++|||+|++||++..... .+. ......+|++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+
T Consensus 153 A~~l~~~G~~V~~~dr~~~~~~-~~~-~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~ 230 (324)
T 3evt_A 153 AAKASALGMHVIGVNTTGHPAD-HFH-ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGP 230 (324)
T ss_dssp HHHHHHTTCEEEEEESSCCCCT-TCS-EEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGG
T ss_pred HHHHHhCCCEEEEECCCcchhH-hHh-hccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCCh
Confidence 9999999999999999875432 121 12345789999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 006758 258 LLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAI 336 (632)
Q Consensus 258 iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvV 336 (632)
++|++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.++..++...+++||.+|+.+|+.+.|+|
T Consensus 231 ~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V 310 (324)
T 3evt_A 231 AVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQV 310 (324)
T ss_dssp GBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBC
T ss_pred hhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceE
Confidence 99999999999999999999999997 77889999999999999999999999999999999999999987888899999
Q ss_pred cCCcCcc
Q 006758 337 SDTEGCE 343 (632)
Q Consensus 337 n~~~~~~ 343 (632)
|...+|+
T Consensus 311 ~~~~~~~ 317 (324)
T 3evt_A 311 DLNRGYE 317 (324)
T ss_dssp C------
T ss_pred CcccccC
Confidence 9998883
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-60 Score=511.27 Aligned_cols=319 Identities=24% Similarity=0.307 Sum_probs=267.4
Q ss_pred CCCCCCCCCCCEEEEeCCCCCCchHHhhccCC--ceEEecCCCCCc----ccccccceEEEEecCCCCCHHHHhcCCCce
Q 006758 10 MPHRDNPTPLPSVVALNCIEDCVLEQDSLAGV--ALVEHVPLGRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQ 83 (632)
Q Consensus 10 m~~~~~~~~kP~VvvL~~~e~~~~e~e~L~~l--aeV~~~~~~~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK 83 (632)
|+....++.+++|++++.+. +...+.|+.. .++...+. .++ .+.++++|++++++.+++++++++++|+||
T Consensus 6 ~~~~~~~~~~~kIl~~~~i~--~~~~~~l~~~g~~~v~~~~~-~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk 82 (416)
T 3k5p_A 6 TERLSLSRDRINVLLLEGIS--QTAVEYFKSSGYTNVTHLPK-ALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLI 82 (416)
T ss_dssp ------CGGGSCEEECSCCC--HHHHHHHHHTTCCCEEECSS-CCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCC
T ss_pred ccccCCCCCCcEEEEECCCC--HHHHHHHHHCCCcEEEECCC-CCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcE
Confidence 43444556678899987653 3344555533 26665542 222 245789999999988899999999999999
Q ss_pred EEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCc
Q 006758 84 LILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGL 163 (632)
Q Consensus 84 ~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~Gk 163 (632)
+|++.|+|+||||+++|+++||.|+|+|++++++||||+++++|+++|++..+.+. .+.+.|.... ...++|+|+
T Consensus 83 ~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~-~~~g~W~~~~----~~~~el~gk 157 (416)
T 3k5p_A 83 AVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVS-AHAGGWEKTA----IGSREVRGK 157 (416)
T ss_dssp EEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCC----TTCCCSTTC
T ss_pred EEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHh-hhcccccccC----CCCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999887 5889997542 224689999
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhc
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQH 243 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~ 243 (632)
||||||+|+||+.+|+++++|||+|++||++..... .+.....+|++++++||+|++|||+|++|+++|+++.|+.
T Consensus 158 tvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~ 233 (416)
T 3k5p_A 158 TLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRK 233 (416)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHH
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhh
Confidence 999999999999999999999999999999753221 2345567999999999999999999999999999999999
Q ss_pred cCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCC----ccccCCCcEEEcCCCCCccHHHHHHHHHHH
Q 006758 244 IKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWME----AWVREMPNVLILPRSADYSEEVWMEIRDKA 318 (632)
Q Consensus 244 MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~----~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a 318 (632)
||+|++|||+|||++||++||++||++|+|+||+||||++ |++.+ +|||.+|||++|||+||+|.++..++...+
T Consensus 234 mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~ 313 (416)
T 3k5p_A 234 MKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEV 313 (416)
T ss_dssp SCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 44433 799999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccccCCcC
Q 006758 319 ISVLQTFFFDGVIPKNAISDTEG 341 (632)
Q Consensus 319 ~~nL~~fL~~G~~p~nvVn~~~~ 341 (632)
++||.+|+.+|. +.+.||..+-
T Consensus 314 ~~nl~~~l~~g~-~~~~Vn~p~~ 335 (416)
T 3k5p_A 314 TRKLVEYSDVGS-TVGAVNFPQV 335 (416)
T ss_dssp HHHHHHHHHHCC-CTTBSSSCCC
T ss_pred HHHHHHHHhhCC-CCceeeCCCc
Confidence 999999986665 8899997553
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-59 Score=495.93 Aligned_cols=319 Identities=22% Similarity=0.241 Sum_probs=273.0
Q ss_pred CEEEEeCCCCCCch---HHhhccCCceEEecCCCCCc----ccccccceEEEE-ecCCCCCHHHHhcCCCceEEEEeccc
Q 006758 20 PSVVALNCIEDCVL---EQDSLAGVALVEHVPLGRLA----DGKIEAAAAVLL-HSLAYLPRAAQRRLRPYQLILCLGSS 91 (632)
Q Consensus 20 P~VvvL~~~e~~~~---e~e~L~~laeV~~~~~~~l~----e~~i~dAdaIli-~s~~~L~~evL~~lp~LK~I~~~gaG 91 (632)
-+|++++....... ..+.|++ .++..++....+ .+.++++|++++ ++..++++++++++|+||+|++.|+|
T Consensus 3 mki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~G 81 (352)
T 3gg9_A 3 LKIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGRV 81 (352)
T ss_dssp CEEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSCC
T ss_pred eEEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCcc
Confidence 35777776544321 2345666 577666532211 246789999998 56679999999999999999999999
Q ss_pred C----CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCC------CCCCCcccccc
Q 006758 92 D----RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSV------QPLCRGMRRCR 161 (632)
Q Consensus 92 ~----D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~------~~~~~~~~~L~ 161 (632)
+ |+||+++|+++||.|+|+||+ +++||||++++||+++|++..+.+. .+.+.|.... .+....+.+|.
T Consensus 82 ~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~-~~~g~W~~~~~~~~~~~~~~~~~~~l~ 159 (352)
T 3gg9_A 82 SRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVAS-LKHGAWQQSGLKSTTMPPNFGIGRVLK 159 (352)
T ss_dssp CCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCTTCCCCCCTTSCTTTTSBCCCT
T ss_pred cCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHH-HHcCCCCcccccccccccccccCccCC
Confidence 9 999999999999999999999 9999999999999999999999987 4789997532 11112347899
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
|+||||||+|.||+.+|+++++|||+|++||++... ......++....++++++++||+|++|||+|++|+++|+++.|
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l 238 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADL 238 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHH
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHH
Confidence 999999999999999999999999999999998522 1122345555669999999999999999999999999999999
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHH
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAIS 320 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~ 320 (632)
+.||+|++|||+|||+++|++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.++..++...+++
T Consensus 239 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ 318 (352)
T 3gg9_A 239 TRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQ 318 (352)
T ss_dssp TTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHH
T ss_pred hhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987 6678999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccccCCcCccC
Q 006758 321 VLQTFFFDGVIPKNAISDTEGCEN 344 (632)
Q Consensus 321 nL~~fL~~G~~p~nvVn~~~~~~~ 344 (632)
||.+|+ +|+ |.|+||++...+.
T Consensus 319 ni~~~~-~G~-p~~~Vn~~~~~~~ 340 (352)
T 3gg9_A 319 NILDIL-QGN-VDSVANPTALAPA 340 (352)
T ss_dssp HHHHHH-TTC-CTTBSCGGGSSCT
T ss_pred HHHHHH-cCC-CCcccCHHHHHHH
Confidence 999996 786 6799998765543
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-60 Score=500.91 Aligned_cols=306 Identities=20% Similarity=0.271 Sum_probs=265.5
Q ss_pred HhhccCC-ceEEecCCCCC----cccccccceEEEEecC--CCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEE
Q 006758 35 QDSLAGV-ALVEHVPLGRL----ADGKIEAAAAVLLHSL--AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRL 107 (632)
Q Consensus 35 ~e~L~~l-aeV~~~~~~~l----~e~~i~dAdaIli~s~--~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~V 107 (632)
.+.|+.. .++..++.... ..+.++++|+++++.. .++++++++++|+||+|++.|+|+||||+++|+++||.|
T Consensus 33 ~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V 112 (351)
T 3jtm_A 33 RDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTV 112 (351)
T ss_dssp HHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred HHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeE
Confidence 4445443 56666554322 2356889999998753 469999999999999999999999999999999999999
Q ss_pred EEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCE
Q 006758 108 IHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMS 187 (632)
Q Consensus 108 tNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~ 187 (632)
+|+|++++.+||||++++||+++|++..+++. .+++.|.... ......+|+|++|||||+|.||+.+|++|++|||+
T Consensus 113 ~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~W~~~~--~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~ 189 (351)
T 3jtm_A 113 AEVTGSNVVSVAEDELMRILILMRNFVPGYNQ-VVKGEWNVAG--IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN 189 (351)
T ss_dssp EECTTTTHHHHHHHHHHHHHHHHHTHHHHHHH-HHTTCCCHHH--HHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCE
T ss_pred EECCCcCchHHHHHHHHHHHHHhhCcHHHHHH-HHcCCCcccc--ccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCE
Confidence 99999999999999999999999999999887 5889996421 01123579999999999999999999999999999
Q ss_pred EEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 188 VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 188 V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
|++||++....+.....++....++++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||+++|++||++|
T Consensus 190 V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~a 269 (351)
T 3jtm_A 190 LLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDA 269 (351)
T ss_dssp EEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHH
T ss_pred EEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHH
Confidence 99999886433222223555567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC--CCCccccCCcCccC
Q 006758 268 LIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV--IPKNAISDTEGCEN 344 (632)
Q Consensus 268 L~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~--~p~nvVn~~~~~~~ 344 (632)
|++|+|+||+||||++ |++.++|||++|||++|||+||+|.++..++...+++||.+|+ .|+ .|.|+|+.+-.|.+
T Consensus 270 L~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~-~g~~~~~~~~i~~~~~~~~ 348 (351)
T 3jtm_A 270 VESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF-KGEDFPTENYIVKDGELAP 348 (351)
T ss_dssp HHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHH-HTCCCCGGGEEEETTEECG
T ss_pred HHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCCceEEecCCcccc
Confidence 9999999999999997 7788999999999999999999999999999999999999997 666 48899988766643
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-59 Score=502.36 Aligned_cols=309 Identities=24% Similarity=0.246 Sum_probs=260.8
Q ss_pred CCEEEEeCCCCCCchHHhhccCC-c-eEEecCCCCCcc----cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGV-A-LVEHVPLGRLAD----GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~l-a-eV~~~~~~~l~e----~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
+++|++++.+. +...+.|... . ++...+. .+++ +.++++|++++++.+++++++++++|+||+|+++|+|+
T Consensus 4 ~~kil~~~~~~--~~~~~~l~~~~~~~v~~~~~-~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 80 (404)
T 1sc6_A 4 KIKFLLVEGVH--QKALESLRAAGYTNIEFHKG-ALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGT 80 (404)
T ss_dssp SCCEEECSCCC--HHHHHHHHHTTCCCEEECSS-CCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCC
T ss_pred ceEEEEeCCCC--HHHHHHHHhCCCcEEEEcCC-CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCccc
Confidence 34677776542 3334555443 3 5655442 2221 45789999999888899999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCCh
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSA 172 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~ 172 (632)
||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.++.. .+.+.|.... ....+|+|+||||||+|+
T Consensus 81 d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~-~~~g~W~~~~----~~~~el~gktlGiIGlG~ 155 (404)
T 1sc6_A 81 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAK-AHRGVGNKLA----AGSFEARGKKLGIIGYGH 155 (404)
T ss_dssp TTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHH-HHHTCCC---------CCCSTTCEEEEECCSH
T ss_pred CccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHH-HHcCCccccC----CCccccCCCEEEEEeECH
Confidence 99999999999999999999999999999999999999999999887 5889996432 223689999999999999
Q ss_pred hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEE
Q 006758 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (632)
Q Consensus 173 IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLIN 252 (632)
||+.+|+++++|||+|++||++..... .++....+|++++++||+|++|+|+|++|+++|+++.|+.||+|++|||
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN 231 (404)
T 1sc6_A 156 IGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLIN 231 (404)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhcc----CCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEE
Confidence 999999999999999999999764321 1244556999999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCC----CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 006758 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQW----MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 253 vgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~----~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
+|||+++|++||+++|++|+|+||+||||++ |++ .++|||++||||+|||+|++|.++..++...+++||.+|+.
T Consensus 232 ~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~ 311 (404)
T 1sc6_A 232 ASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSD 311 (404)
T ss_dssp CSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999987 443 25799999999999999999999999999999999999985
Q ss_pred cCCCCCccccCCc
Q 006758 328 DGVIPKNAISDTE 340 (632)
Q Consensus 328 ~G~~p~nvVn~~~ 340 (632)
|..+.|.||...
T Consensus 312 -g~~~~~~vn~p~ 323 (404)
T 1sc6_A 312 -NGSTLSAVNFPE 323 (404)
T ss_dssp -HCCCTTBSSSCC
T ss_pred -CCCCcceecccc
Confidence 445899999654
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-59 Score=496.56 Aligned_cols=313 Identities=18% Similarity=0.194 Sum_probs=258.8
Q ss_pred CCCCEEEEeCCCCC-----CchHHhhccCCceEEecCC---CCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEe
Q 006758 17 TPLPSVVALNCIED-----CVLEQDSLAGVALVEHVPL---GRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCL 88 (632)
Q Consensus 17 ~~kP~VvvL~~~e~-----~~~e~e~L~~laeV~~~~~---~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~ 88 (632)
+.+|++++...... .+...+.|+..+++..... .++.+..+.++++++. ..++++++++++|+||+|+..
T Consensus 26 ~~r~ivll~~~~~~~~~~~~~~~~~~L~~~~~v~~~~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~I~~~ 103 (365)
T 4hy3_A 26 TERPLAISAPEPRSLDLIFSDEARAALHSKYEIVEADPENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRSILNV 103 (365)
T ss_dssp --CCEEEEECTTSCHHHHCCHHHHHHHHHHSEEEECCGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCEEECC
T ss_pred CCCCEEEEcCCcccccccCCHHHHHHHhCCcEEEECCCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeEEEEe
Confidence 34666666543222 2234566766667764432 2222333456666653 358999999999999999975
Q ss_pred -cccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcC--CCCCCCCCCCccccccCcEE
Q 006758 89 -GSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASG--WLGSVQPLCRGMRRCRGLVL 165 (632)
Q Consensus 89 -gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~--W~~~~~~~~~~~~~L~GktV 165 (632)
|+|+|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++. .+.+. |.... .....+|.|+||
T Consensus 104 ~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~-~r~g~~~w~~~~---~~~~~~l~gktv 179 (365)
T 4hy3_A 104 ESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIA-FQEGTELWGGEG---NASARLIAGSEI 179 (365)
T ss_dssp SSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHH-HHHTCCCCSSSS---TTSCCCSSSSEE
T ss_pred cccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHH-HHcCCccccccc---cccccccCCCEE
Confidence 789999999999999999999999999999999999999999999998887 46777 53321 123468999999
Q ss_pred EEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccC
Q 006758 166 GIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245 (632)
Q Consensus 166 GIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK 245 (632)
||||+|.||+.+|+++++|||+|++||++... ......++. ..+|++++++||||++|+|+|++|+++|+++.|+.||
T Consensus 180 GIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk 257 (365)
T 4hy3_A 180 GIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENGVE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMR 257 (365)
T ss_dssp EEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTTCE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSC
T ss_pred EEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcCee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCC
Confidence 99999999999999999999999999998532 111223333 4699999999999999999999999999999999999
Q ss_pred CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHH
Q 006758 246 PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQT 324 (632)
Q Consensus 246 ~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~ 324 (632)
+|++|||+|||++||++||++||++|+|+ |+||||++ |++.++|||.+|||++|||+||+|.++..++...+++||.+
T Consensus 258 ~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~ 336 (365)
T 4hy3_A 258 RGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDL 336 (365)
T ss_dssp TTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 89999987 66789999999999999999999999999999999999999
Q ss_pred HHHcCCCCCccccCC
Q 006758 325 FFFDGVIPKNAISDT 339 (632)
Q Consensus 325 fL~~G~~p~nvVn~~ 339 (632)
|+ .|++|.++||.+
T Consensus 337 ~~-~G~~~~~~vn~~ 350 (365)
T 4hy3_A 337 MD-RGLPPMRCKRAE 350 (365)
T ss_dssp HH-TTCCCCSSEECC
T ss_pred HH-cCCCcccccccc
Confidence 96 899999999974
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=494.03 Aligned_cols=307 Identities=21% Similarity=0.246 Sum_probs=258.6
Q ss_pred CEEEEeCCCCCCchHHhhc-c-CCceEEecCC--CCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCcc
Q 006758 20 PSVVALNCIEDCVLEQDSL-A-GVALVEHVPL--GRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV 95 (632)
Q Consensus 20 P~VvvL~~~e~~~~e~e~L-~-~laeV~~~~~--~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~V 95 (632)
-+|+++.... ....+.| + .+.+++.... .+...+.+.++|+++++. .+++++++++|+||||++.|+|+|+|
T Consensus 6 mkili~~~~~--~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~i 81 (324)
T 3hg7_A 6 RTLLLLSQDN--AHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEP--ARAKPLLAKANKLSWFQSTYAGVDVL 81 (324)
T ss_dssp EEEEEESTTH--HHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEECH--HHHGGGGGGCTTCCEEEESSSCCGGG
T ss_pred cEEEEecCCC--HHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEECC--CCCHHHHhhCCCceEEEECCCCCCcc
Confidence 4577776532 2334455 3 3334444322 222235688999988763 45677899999999999999999999
Q ss_pred chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhH
Q 006758 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR 175 (632)
Q Consensus 96 D~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~ 175 (632)
|++++++ ||.|+|+||+++.+||||+++++|+++|++..+.+. .+.+.|... ...+|.|+||||||+|.||+
T Consensus 82 d~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~W~~~------~~~~l~g~tvGIIGlG~IG~ 153 (324)
T 3hg7_A 82 LDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQ-QKQRLWQSH------PYQGLKGRTLLILGTGSIGQ 153 (324)
T ss_dssp SCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCC------CCCCSTTCEEEEECCSHHHH
T ss_pred ChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHH-HhhCCCcCC------CCcccccceEEEEEECHHHH
Confidence 9988765 999999999999999999999999999999999987 478999743 23579999999999999999
Q ss_pred HHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 176 ALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 176 ~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+|++|++|||+|++||++..... .+ .......+|++++++||||++|||+|++|+++|+++.|+.||+|++|||+||
T Consensus 154 ~vA~~l~~~G~~V~~~dr~~~~~~-~~-~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aR 231 (324)
T 3hg7_A 154 HIAHTGKHFGMKVLGVSRSGRERA-GF-DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGR 231 (324)
T ss_dssp HHHHHHHHTTCEEEEECSSCCCCT-TC-SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSC
T ss_pred HHHHHHHhCCCEEEEEcCChHHhh-hh-hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCC
Confidence 999999999999999999874332 11 1233457899999999999999999999999999999999999999999999
Q ss_pred ChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006758 256 SQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334 (632)
Q Consensus 256 G~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~n 334 (632)
|++||++||++||++|+|+||+||||++ |++.++|||++|||++|||+||+|.+ .++.+.+++||.+|+ +|+.|.|
T Consensus 232 G~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~-~G~~~~~ 308 (324)
T 3hg7_A 232 GNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFI-DGQPLDG 308 (324)
T ss_dssp GGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHH-TTCCCTT
T ss_pred chhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHH-cCCCCcc
Confidence 9999999999999999999999999997 77889999999999999999999976 578999999999996 8999999
Q ss_pred cccCCcCcc
Q 006758 335 AISDTEGCE 343 (632)
Q Consensus 335 vVn~~~~~~ 343 (632)
+||++.+|+
T Consensus 309 ~V~~~~~~~ 317 (324)
T 3hg7_A 309 KIDFDKGYE 317 (324)
T ss_dssp BCCCC----
T ss_pred eEChhhhcc
Confidence 999999885
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-58 Score=487.58 Aligned_cols=289 Identities=21% Similarity=0.254 Sum_probs=248.7
Q ss_pred eEEecCC--CCCcccccccceEEEEecCCCCCHH-HHhcCC--CceEEEEecccCCccchHHHHhcCcEEEEcCCCChHH
Q 006758 43 LVEHVPL--GRLADGKIEAAAAVLLHSLAYLPRA-AQRRLR--PYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEE 117 (632)
Q Consensus 43 eV~~~~~--~~l~e~~i~dAdaIli~s~~~L~~e-vL~~lp--~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~a 117 (632)
++...+. .+...+.++++|++++....+++++ +++++| +||+|++.|+|+|+||+++|+++||.|+|+|++++++
T Consensus 27 ~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~ 106 (343)
T 2yq5_A 27 EIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRA 106 (343)
T ss_dssp EEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSCCTTBCSSTTCC--CEEECCSCSCHHH
T ss_pred EEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECceeecccchhHHHhCCEEEEECCCCCcHH
Confidence 5555442 1222356889999999887899999 999986 5999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHH-hcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 118 IADTVMALLLGLLRRTHLLARHALS-ASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 118 VAE~ALaliLal~Rrl~~~~~~~~~-~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
||||+++++|+++|++..+.+.. + .+.|..... ...++|.|+||||||+|.||+.+|+++++|||+|++||++..
T Consensus 107 vAE~~~~l~L~~~R~~~~~~~~~-~~~g~~~w~~~---~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~ 182 (343)
T 2yq5_A 107 IAEMTVTQAMYLLRKIGEFRYRM-DHDHDFTWPSN---LISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYN 182 (343)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH-HHHCCCCCCGG---GCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHhchHHHHHHH-HHcCCcccccC---CCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChh
Confidence 99999999999999999998874 5 676642111 234689999999999999999999999999999999999874
Q ss_pred CCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceE
Q 006758 197 KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276 (632)
Q Consensus 197 ~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GA 276 (632)
.. ...+ ..+.++++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||
T Consensus 183 ~~---~~~~-~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA 258 (343)
T 2yq5_A 183 PE---FEPF-LTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGA 258 (343)
T ss_dssp GG---GTTT-CEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCE
T ss_pred hh---hhcc-ccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEE
Confidence 32 2222 3345999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCC---CCC-----------ccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCc
Q 006758 277 ALDGAEGPQ---WME-----------AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 277 aLDVfE~P~---~~~-----------~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
+||||++|| +.+ +|||++|||++|||+|++|.++..++.+.+++||.+|+ +|+.|.|.||+..
T Consensus 259 ~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~~~l-~g~~~~~~v~~~~ 335 (343)
T 2yq5_A 259 GLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIA-KGGRPRSIVNLTA 335 (343)
T ss_dssp EESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHH-TTCCCTTBC----
T ss_pred EecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHHHHH-cCCCCCceECCcc
Confidence 999999733 333 48999999999999999999999999999999999996 8888999999754
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-58 Score=484.22 Aligned_cols=318 Identities=31% Similarity=0.492 Sum_probs=270.3
Q ss_pred CCCCCEEEEeCCCCCCchHHhhccCCceEEecCCCC---CcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccC
Q 006758 16 PTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGR---LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSD 92 (632)
Q Consensus 16 ~~~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~---l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~ 92 (632)
++.+|+|++++.. .+..+.+.++..+++..++... +.+..++++++++++...++++++++++|+||+|++.|+|+
T Consensus 18 ~~~kp~i~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 96 (347)
T 1mx3_A 18 GSHMPLVALLDGR-DCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGF 96 (347)
T ss_dssp ---CCEEEESSCS-CCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCC
T ss_pred CCCCCEEEEEcCC-cchhhHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEccccc
Confidence 4669999999864 3445678888888887775322 22222367788888877789999999999999999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCC---CCCCccccccCcEEEEEe
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ---PLCRGMRRCRGLVLGIVG 169 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~---~~~~~~~~L~GktVGIIG 169 (632)
|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++. .+.+.|..... ....+..+|.|++|||||
T Consensus 97 d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG 175 (347)
T 1mx3_A 97 DNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA-LREGTRVQSVEQIREVASGAARIRGETLGIIG 175 (347)
T ss_dssp TTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTTCEEEEEC
T ss_pred CcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHH-HHcCCcccccccccccccCccCCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999998887 57889953211 001123579999999999
Q ss_pred CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcE
Q 006758 170 RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 170 lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
+|.||+.+|++|++|||+|++||++..... ....++..+.++++++++||+|++|||++++|+++|+++.|+.||+|++
T Consensus 176 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai 254 (347)
T 1mx3_A 176 LGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 254 (347)
T ss_dssp CSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEE
T ss_pred ECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCE
Confidence 999999999999999999999998864321 1223444556899999999999999999999999999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCC-CCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 006758 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQW-MEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~-~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
|||+|||+++|+++|+++|++|+|+||+||||+. |++ .++||+.+|||++|||+|++|+++..++.+.+++||.+|+
T Consensus 255 lIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~- 333 (347)
T 1mx3_A 255 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAI- 333 (347)
T ss_dssp EEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHH-
T ss_pred EEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999997 444 3689999999999999999999999999999999999997
Q ss_pred cCCCCC---cccc
Q 006758 328 DGVIPK---NAIS 337 (632)
Q Consensus 328 ~G~~p~---nvVn 337 (632)
.|+.|. |+||
T Consensus 334 ~g~~~~~l~~~v~ 346 (347)
T 1mx3_A 334 TGRIPDSLKNCVN 346 (347)
T ss_dssp HSCTTTTCSSBCC
T ss_pred cCCCCcccCCCCC
Confidence 677665 6665
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-58 Score=481.54 Aligned_cols=271 Identities=17% Similarity=0.210 Sum_probs=239.0
Q ss_pred ccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCcc-c-hHH---HHhcCcEEEEcCCCC-hHHHHHHHHHHHHHH
Q 006758 56 KIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV-D-SAL---AADLGLRLIHVDTSR-AEEIADTVMALLLGL 129 (632)
Q Consensus 56 ~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~V-D-~~a---a~erGI~VtNvpg~n-a~aVAE~ALaliLal 129 (632)
...++|+++++. ++++++++ |+||+|++.|+|+||| | +++ +.++||.|+|+++++ +.+||||+++++|++
T Consensus 38 ~~~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~ 113 (315)
T 3pp8_A 38 DNNPADYALVWQ---PPVEMLAG-RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHW 113 (315)
T ss_dssp CCSCCSEEEESS---CCHHHHTT-CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHH
T ss_pred CccCcEEEEECC---CCHHHhCC-CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHH
Confidence 356899999884 48999999 9999999999999999 7 876 678899999999874 899999999999999
Q ss_pred HhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceec
Q 006758 130 LRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM 209 (632)
Q Consensus 130 ~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~ 209 (632)
+|++..+.+. .+.+.|... ..++++|+||||||+|.||+.+|++|++|||+|++||++..... ... .....
T Consensus 114 ~R~~~~~~~~-~~~g~W~~~------~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~-~~~-~~~~~ 184 (315)
T 3pp8_A 114 FRRFDDYQAL-KNQALWKPL------PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP-GVE-SYVGR 184 (315)
T ss_dssp HTTHHHHHHH-HHTTCCCCC------CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCT-TCE-EEESH
T ss_pred HhCChHHHHH-HHhcccCCC------CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhh-hhh-hhccc
Confidence 9999999887 478999753 23679999999999999999999999999999999999875332 111 11112
Q ss_pred CCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCC
Q 006758 210 DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWME 288 (632)
Q Consensus 210 ~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~ 288 (632)
.+|++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++ |++.+
T Consensus 185 ~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~ 264 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQE 264 (315)
T ss_dssp HHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTT
T ss_pred CCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999997 77889
Q ss_pred ccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCcCc
Q 006758 289 AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGC 342 (632)
Q Consensus 289 ~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~~~ 342 (632)
+|||++|||++|||+|++|.+ .++...+++||.+|+ .|+.|.|+||+++||
T Consensus 265 ~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~-~G~~~~~~V~~~~GY 315 (315)
T 3pp8_A 265 SPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLE-KGEPVTGQVDRARGY 315 (315)
T ss_dssp CGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHH-HTCCCCCBCCCC---
T ss_pred ChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHH-cCCCCCceECcccCC
Confidence 999999999999999999986 578999999999996 888899999999998
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-58 Score=489.81 Aligned_cols=322 Identities=18% Similarity=0.261 Sum_probs=268.8
Q ss_pred CCCEEEEeCCCCCCchHHhhccCC-ceEEecCCCC----CcccccccceEEEEecC--CCCCHHHHhcCCCceEEEEecc
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGV-ALVEHVPLGR----LADGKIEAAAAVLLHSL--AYLPRAAQRRLRPYQLILCLGS 90 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~l-aeV~~~~~~~----l~e~~i~dAdaIli~s~--~~L~~evL~~lp~LK~I~~~ga 90 (632)
.+|+|+..+. ......+.|+.. .++..++... ...+.+.++|+++++.. .++++++++++|+||+|++.|+
T Consensus 16 ~~~~vl~~d~--~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~ 93 (364)
T 2j6i_A 16 DEEKLYGCTE--NKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGV 93 (364)
T ss_dssp HCTTCTTBTT--TGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSS
T ss_pred cCceEEEecC--ccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCc
Confidence 3455555443 222333444432 3565544321 12245788999888643 3689999999999999999999
Q ss_pred cCCccchHHHHhc--CcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEE
Q 006758 91 SDRTVDSALAADL--GLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIV 168 (632)
Q Consensus 91 G~D~VD~~aa~er--GI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGII 168 (632)
|+||||+++|+++ ||.|+|+|++++.+||||++++||+++|++..+++. .+.+.|.... ......+|.|++||||
T Consensus 94 G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~W~~~~--~~~~~~~l~g~tvgII 170 (364)
T 2j6i_A 94 GSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQ-IINHDWEVAA--IAKDAYDIEGKTIATI 170 (364)
T ss_dssp CCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCHHH--HHTTCCCSTTCEEEEE
T ss_pred ccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHH-HHhCCCCcCc--ccCCcccCCCCEEEEE
Confidence 9999999999999 999999999999999999999999999999999887 5889996311 0012357999999999
Q ss_pred eCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCC
Q 006758 169 GRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPG 247 (632)
Q Consensus 169 GlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~G 247 (632)
|+|+||+.+|++|++|||+ |++||++..........++....++++++++||+|++|+|+|++|+++|+++.|+.||+|
T Consensus 171 G~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~g 250 (364)
T 2j6i_A 171 GAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKG 250 (364)
T ss_dssp CCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTT
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCC
Confidence 9999999999999999997 999998764332222234455568999999999999999999999999999999999999
Q ss_pred cEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCC--C---cEEEcCCCCCccHHHHHHHHHHHHHH
Q 006758 248 AFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREM--P---NVLILPRSADYSEEVWMEIRDKAISV 321 (632)
Q Consensus 248 AvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~--p---NVIiTPHiAg~T~ea~~~~~~~a~~n 321 (632)
++|||+|||+++|+++|+++|++|+|+||+||||++ |++.++|||.+ | ||++|||+|++|.++..++...+++|
T Consensus 251 a~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~n 330 (364)
T 2j6i_A 251 AWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNI 330 (364)
T ss_dssp EEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 66789999999 9 99999999999999999999999999
Q ss_pred HHHHHHcCC---CCCccccCCcCccCc
Q 006758 322 LQTFFFDGV---IPKNAISDTEGCENE 345 (632)
Q Consensus 322 L~~fL~~G~---~p~nvVn~~~~~~~~ 345 (632)
|.+|+ +|+ .|.|+|+...+|.+-
T Consensus 331 l~~~~-~g~~~~~~~n~v~~~~~y~~~ 356 (364)
T 2j6i_A 331 LESFF-TGKFDYRPQDIILLNGEYGTK 356 (364)
T ss_dssp HHHHH-TTCCCCCGGGEEEBTTBC---
T ss_pred HHHHH-cCCCCCCCCceecCCcCcchh
Confidence 99997 787 689999999999663
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-57 Score=476.84 Aligned_cols=275 Identities=21% Similarity=0.265 Sum_probs=246.7
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--ceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rr 132 (632)
+.++++|+++++...++++++++++|+ ||+|++.|+|+||||+++|+++||.|+|+|++++++||||++++||+++|+
T Consensus 42 ~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~ 121 (333)
T 1j4a_A 42 ALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQ 121 (333)
T ss_dssp GGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcC
Confidence 457899999998777899999999988 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH
Q 006758 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (632)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (632)
+..+++. .+.+.|.... ....++.|++|||||+|.||+.+|+++++|||+|++||++..... ...+....++
T Consensus 122 ~~~~~~~-~~~g~w~~~~----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~~~~~~l 193 (333)
T 1j4a_A 122 DKAMDEK-VARHDLRWAP----TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL---EKKGYYVDSL 193 (333)
T ss_dssp HHHHHHH-HHTTBCCCTT----CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHTTCBCSCH
T ss_pred HHHHHHH-HHcCCCccCC----cccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhH---HhhCeecCCH
Confidence 9999887 4788885221 123679999999999999999999999999999999999864321 1122233489
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC---CCC-
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WME- 288 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~---~~~- 288 (632)
++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|| +.+
T Consensus 194 ~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~ 273 (333)
T 1j4a_A 194 DDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDW 273 (333)
T ss_dssp HHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBC
T ss_pred HHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998743 333
Q ss_pred ------c----cccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 006758 289 ------A----WVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISD 338 (632)
Q Consensus 289 ------~----pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~ 338 (632)
+ |||++|||++|||+|++|.++..++.+.+++||.+|+ +|+.|.|+||.
T Consensus 274 ~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~-~g~~~~~~v~~ 332 (333)
T 1j4a_A 274 EGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELV-EGKEAETPVKV 332 (333)
T ss_dssp TTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHH-TTCCCSSBCCC
T ss_pred ccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHHHH-cCCCCCccccC
Confidence 2 6999999999999999999999999999999999996 88889999985
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-57 Score=476.52 Aligned_cols=275 Identities=21% Similarity=0.269 Sum_probs=247.1
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--ceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rr 132 (632)
+.++++|+++++...++++++++++|+ ||+|++.|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|+
T Consensus 40 ~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~ 119 (333)
T 1dxy_A 40 EWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRN 119 (333)
T ss_dssp GGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhh
Confidence 457899999998777899999999988 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCC-CCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCC
Q 006758 133 THLLARHALSASGWLG-SVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDT 211 (632)
Q Consensus 133 l~~~~~~~~~~g~W~~-~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~s 211 (632)
+..+++. .+.+.|.. .. ....+|.|++|||||+|.||+.+|+++++|||+|++||++..... ... ..+.+
T Consensus 120 ~~~~~~~-~~~g~w~~~~~----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~-~~~~~ 190 (333)
T 1dxy_A 120 MGKVQAQ-LQAGDYEKAGT----FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPD-FDYVS 190 (333)
T ss_dssp HHHHHHH-HHTTCHHHHTC----CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTT-CEECC
T ss_pred HHHHHHH-HHcCCcccccC----CCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhh---Hhc-cccCC
Confidence 9999887 47888841 11 123579999999999999999999999999999999999875431 112 23458
Q ss_pred HHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC------
Q 006758 212 LNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ------ 285 (632)
Q Consensus 212 L~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~------ 285 (632)
+++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||
T Consensus 191 l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~ 270 (333)
T 1dxy_A 191 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNL 270 (333)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHH
T ss_pred HHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred -----CCC---ccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCccccCC
Q 006758 286 -----WME---AWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAISDT 339 (632)
Q Consensus 286 -----~~~---~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~ 339 (632)
..+ +|||++|||++|||+|++|.++..++...+++||.+|+ +|+.+.|+||.+
T Consensus 271 ~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~-~g~~~~~~v~~~ 331 (333)
T 1dxy_A 271 AKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFL-TKGETSTEVTGP 331 (333)
T ss_dssp HHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHH-HHSCCTTEECC-
T ss_pred ccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHH-cCCCCCceeCCC
Confidence 122 58999999999999999999999999999999999997 677789999875
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-57 Score=485.85 Aligned_cols=279 Identities=24% Similarity=0.274 Sum_probs=249.4
Q ss_pred cccccceEEEEec--CCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 006758 55 GKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (632)
Q Consensus 55 ~~i~dAdaIli~s--~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rr 132 (632)
+.+.++|++++.. ..++++++++++|+||+|++.|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|+
T Consensus 85 ~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~ 164 (393)
T 2nac_A 85 RELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRN 164 (393)
T ss_dssp HHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhc
Confidence 4678999988764 34799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH
Q 006758 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (632)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (632)
+..+++. .+.+.|..... .....+|.|++|||||+|.||+.+|++|++|||+|++||++..........++....++
T Consensus 165 ~~~~~~~-~~~g~W~~~~~--~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l 241 (393)
T 2nac_A 165 YLPSHEW-ARKGGWNIADC--VSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATR 241 (393)
T ss_dssp HHHHHHH-HHTTCCCHHHH--HTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSH
T ss_pred cHHHHHH-HHcCCCCcccc--ccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCH
Confidence 9988886 57899963110 01235799999999999999999999999999999999998643322222344445689
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccc
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWV 291 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL 291 (632)
++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++ |++.++||
T Consensus 242 ~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL 321 (393)
T 2nac_A 242 EDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPW 321 (393)
T ss_dssp HHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGG
T ss_pred HHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 66789999
Q ss_pred cCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006758 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 292 ~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
|++|||++|||+|++|.++..++...+++||++|+ .|+.+.|+|+
T Consensus 322 ~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~-~G~~~~~~~~ 366 (393)
T 2nac_A 322 RTMPYNGMTPHISGTTLTAQARYAAGTREILECFF-EGRPIRDEYL 366 (393)
T ss_dssp GTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHH-HTCCCCGGGE
T ss_pred HcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHH-cCCCCcceeE
Confidence 99999999999999999999999999999999997 7888888765
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-57 Score=474.71 Aligned_cols=306 Identities=17% Similarity=0.190 Sum_probs=256.1
Q ss_pred CCEEEEeCCCCCCchHHhhccCC-ceEEecCCCC--CcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCcc
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGV-ALVEHVPLGR--LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV 95 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~l-aeV~~~~~~~--l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~V 95 (632)
.++|++.... .+...+.|+.. .++...+... ...+.++++|++++++..++++++++++|+||||++.|+|+|+|
T Consensus 26 ~~~vli~~~~--~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 103 (335)
T 2g76_A 26 LRKVLISDSL--DPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNV 103 (335)
T ss_dssp CCEEEECSCC--CHHHHHHHHHHTCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSCTTB
T ss_pred ceEEEEcCCC--CHHHHHHHHhCCCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCcchh
Confidence 3567776543 23334444443 3554433211 11245788999999887789999999999999999999999999
Q ss_pred chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhH
Q 006758 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR 175 (632)
Q Consensus 96 D~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~ 175 (632)
|+++|+++||.|+|+|++++.+||||++++||+++|++..+++. .+.+.|.... ....+|.|++|||||+|.||+
T Consensus 104 d~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~W~~~~----~~~~~l~g~tvgIIGlG~IG~ 178 (335)
T 2g76_A 104 DLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS-MKDGKWERKK----FMGTELNGKTLGILGLGRIGR 178 (335)
T ss_dssp CHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHH-HHTTCCCTGG----GCBCCCTTCEEEEECCSHHHH
T ss_pred ChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHH-HHcCCCCccC----CCCcCCCcCEEEEEeECHHHH
Confidence 99999999999999999999999999999999999999999887 5889996421 123579999999999999999
Q ss_pred HHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 176 ALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 176 ~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+|+++++|||+|++||++.... .....++. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+||
T Consensus 179 ~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ar 256 (335)
T 2g76_A 179 EVATRMQSFGMKTIGYDPIISPE-VSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCAR 256 (335)
T ss_dssp HHHHHHHTTTCEEEEECSSSCHH-HHHHTTCE-ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred HHHHHHHHCCCEEEEECCCcchh-hhhhcCce-eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence 99999999999999999986432 11223333 35899999999999999999999999999999999999999999999
Q ss_pred ChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006758 256 SQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKN 334 (632)
Q Consensus 256 G~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~n 334 (632)
|+++|+++|+++|++|+|+||+||||+.+|+.++|||++||||+|||+|++|.++..++...+++||.+|+ +|+.+.|
T Consensus 257 g~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~-~g~~~~n 334 (335)
T 2g76_A 257 GGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMV-KGKSLTG 334 (335)
T ss_dssp TTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCC
Confidence 99999999999999999999999999986677899999999999999999999999999999999999996 7776655
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=472.24 Aligned_cols=274 Identities=23% Similarity=0.289 Sum_probs=245.7
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCC--ceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhh
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRP--YQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRR 132 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~--LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rr 132 (632)
+.++++|+++++...++++++++++|+ ||+|++.|+|+||||+++|+++||.|+|+|++++.+||||++++||+++|+
T Consensus 41 ~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~ 120 (331)
T 1xdw_A 41 EMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRH 120 (331)
T ss_dssp HTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhC
Confidence 457899999998777899999999998 999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCH
Q 006758 133 THLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTL 212 (632)
Q Consensus 133 l~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL 212 (632)
+..+++. .+.+.|.... . ....++.|++|||||+|.||+.+|+++++|||+|++||++..... ... ..+.++
T Consensus 121 ~~~~~~~-~~~g~w~~~~-~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~-~~~~~l 192 (331)
T 1xdw_A 121 TAYTTSR-TAKKNFKVDA-F--MFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGI---EDY-CTQVSL 192 (331)
T ss_dssp HHHHHHH-HTTTCCCCCS-T--TCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSC---TTT-CEECCH
T ss_pred HHHHHHH-HHcCCCcccc-C--cCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHH---Hhc-cccCCH
Confidence 9999887 4788884211 1 123579999999999999999999999999999999999875431 112 234599
Q ss_pred HHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC---CC--
Q 006758 213 NDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ---WM-- 287 (632)
Q Consensus 213 ~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~---~~-- 287 (632)
++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|| +.
T Consensus 193 ~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~ 272 (331)
T 1xdw_A 193 DEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDL 272 (331)
T ss_dssp HHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCC
T ss_pred HHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999743 22
Q ss_pred -----C----ccccCC-CcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006758 288 -----E----AWVREM-PNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 288 -----~----~pL~~~-pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
+ +|||++ |||++|||+|++|.++..++...+++||.+|+ +|+.|.|+||
T Consensus 273 ~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~-~g~~~~~~v~ 331 (331)
T 1xdw_A 273 EGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLA-ETGDCPNKIK 331 (331)
T ss_dssp TTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHH-HHSCCTTBCC
T ss_pred cccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHH-cCCCCCCCCC
Confidence 2 379999 99999999999999999999999999999997 6777888886
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-56 Score=466.32 Aligned_cols=310 Identities=20% Similarity=0.261 Sum_probs=266.5
Q ss_pred CCCCCEEEEeCCCCCCchHHhhccCCceEEecCCCCC----cccccccceEEEEecCCCCCHHHHhcCCCceEEEEeccc
Q 006758 16 PTPLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRL----ADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSS 91 (632)
Q Consensus 16 ~~~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l----~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG 91 (632)
-|++|+|++...+ .+...+.|....++..+..... ..+.++++|++++++..++++++++++|+||+|++.|+|
T Consensus 20 ~m~~~~vl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G 97 (333)
T 3ba1_A 20 HMEAIGVLMMCPM--STYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVG 97 (333)
T ss_dssp --CCCEEEECSCC--CHHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSSC
T ss_pred cCCCCEEEEeCCC--CHHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCcc
Confidence 4557888887653 2334455555556655432211 123467899999887778999999999999999999999
Q ss_pred CCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCC
Q 006758 92 DRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRS 171 (632)
Q Consensus 92 ~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG 171 (632)
+|+||+++|+++||.|+|+|++++.+||||++++||+++|++..+++. .+.+.|..... ....+|.|++|||||+|
T Consensus 98 ~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~w~~~~~---~~~~~l~g~~vgIIG~G 173 (333)
T 3ba1_A 98 LDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKY-VRRGAWKFGDF---KLTTKFSGKRVGIIGLG 173 (333)
T ss_dssp CTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTGGGGCCC---CCCCCCTTCCEEEECCS
T ss_pred ccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCcccc---ccccccCCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999887 58899963211 12357999999999999
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEE
Q 006758 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (632)
Q Consensus 172 ~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI 251 (632)
.||+.+|+++++|||+|++||++..... +.....++++++++||+|++|+|++++|+++|+++.|+.||+|++||
T Consensus 174 ~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailI 248 (333)
T 3ba1_A 174 RIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLI 248 (333)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEE
Confidence 9999999999999999999999875422 33446789999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC
Q 006758 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (632)
Q Consensus 252 NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~ 331 (632)
|++||.++|+++|+++|++|+|+||+||||+++|.+.+|||++||||+|||+|++|.++..++...+++||.+|+ +|+.
T Consensus 249 n~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~-~g~~ 327 (333)
T 3ba1_A 249 NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHF-SGKP 327 (333)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHH-HTCC
T ss_pred ECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 999999999999999999999999999999975545599999999999999999999999999999999999997 6777
Q ss_pred CCcccc
Q 006758 332 PKNAIS 337 (632)
Q Consensus 332 p~nvVn 337 (632)
|.|+||
T Consensus 328 ~~~~Vn 333 (333)
T 3ba1_A 328 LLTPVV 333 (333)
T ss_dssp CSSBCC
T ss_pred CCCCCC
Confidence 888886
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=460.92 Aligned_cols=304 Identities=27% Similarity=0.315 Sum_probs=260.7
Q ss_pred CEEEEeCCCCCCchHHhhccCC-ceEEecCCCCCc----ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCc
Q 006758 20 PSVVALNCIEDCVLEQDSLAGV-ALVEHVPLGRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (632)
Q Consensus 20 P~VvvL~~~e~~~~e~e~L~~l-aeV~~~~~~~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~ 94 (632)
|+|++...+.. ...+.|... .++........+ .+.++++|+++++...++++++++++|+||+|++.|+|+|+
T Consensus 1 ~~vl~~~~~~~--~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 78 (311)
T 2cuk_A 1 MRVLVTRTLPG--KALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDH 78 (311)
T ss_dssp CEEEESSCCSS--STTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTT
T ss_pred CEEEEeCCCCH--HHHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCccc
Confidence 45666554322 223444443 466554332222 24578899999887678999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhh
Q 006758 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174 (632)
Q Consensus 95 VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG 174 (632)
||+++|+++||.|+|+|++++.+||||++++||+++|++..+++. .+.+.|.... +......++.|++|||||+|.||
T Consensus 79 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~w~~~~-~~~~~~~~l~g~~vgIIG~G~IG 156 (311)
T 2cuk_A 79 VDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAY-ARDGLWKAWH-PELLLGLDLQGLTLGLVGMGRIG 156 (311)
T ss_dssp BCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCC-TTTTCBCCCTTCEEEEECCSHHH
T ss_pred cCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHH-HHcCCCCccc-cccccCcCCCCCEEEEEEECHHH
Confidence 999999999999999999999999999999999999999999887 5889996321 11112357999999999999999
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 175 ~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
+.+|+++++|||+|++||++..... . ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|
T Consensus 157 ~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~s 229 (311)
T 2cuk_A 157 QAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTA 229 (311)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred HHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECC
Confidence 9999999999999999999875432 1 25689999999999999999999999999999999999999999999
Q ss_pred CChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006758 255 SSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPK 333 (632)
Q Consensus 255 RG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~ 333 (632)
||.++|+++|.++|+ |+|+||+||||++ |++.++|||++||||+|||+|++|.++..++...+++||.+|+ +|+.|.
T Consensus 230 rg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~-~g~~~~ 307 (311)
T 2cuk_A 230 RGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVL-EGREPP 307 (311)
T ss_dssp CGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH-TTCCCS
T ss_pred CCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCC
Confidence 999999999999999 9999999999987 6688999999999999999999999999999999999999997 788788
Q ss_pred ccc
Q 006758 334 NAI 336 (632)
Q Consensus 334 nvV 336 (632)
|+|
T Consensus 308 ~~v 310 (311)
T 2cuk_A 308 NPV 310 (311)
T ss_dssp SBC
T ss_pred Ccc
Confidence 776
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=458.87 Aligned_cols=301 Identities=19% Similarity=0.254 Sum_probs=255.1
Q ss_pred CCEEEEeCCCCCCchHHhhccCC-ceEEecCCCC--CcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCcc
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGV-ALVEHVPLGR--LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV 95 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~l-aeV~~~~~~~--l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~V 95 (632)
+++|++...+. +...+.|+.. .++....... ...+.+.++|+++++...++++++++++|+||+|++.|+|+|+|
T Consensus 3 ~~~il~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (307)
T 1wwk_A 3 RMKVLVAAPLH--EKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNI 80 (307)
T ss_dssp -CEEEECSCCC--HHHHHHHHHTTCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred ceEEEEeCCCC--HHHHHHHHhCCeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccc
Confidence 45677766432 2233444432 3443322111 11245788999998876679999999999999999999999999
Q ss_pred chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhH
Q 006758 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR 175 (632)
Q Consensus 96 D~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~ 175 (632)
|+++|+++||.|+|+||+++.+||||++++||+++|++..+++. .+.+.|.... ....+|.|++|||||+|.||+
T Consensus 81 d~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~w~~~~----~~~~~l~g~~vgIiG~G~IG~ 155 (307)
T 1wwk_A 81 DVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRK-MREGVWAKKE----AMGIELEGKTIGIIGFGRIGY 155 (307)
T ss_dssp CHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHH-HTTTCCCTTT----CCBCCCTTCEEEEECCSHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCccC----cCCcccCCceEEEEccCHHHH
Confidence 99999999999999999999999999999999999999999887 5789996421 123579999999999999999
Q ss_pred HHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 176 ALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 176 ~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+|+++++|||+|++||++... ......++. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+||
T Consensus 156 ~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~ar 233 (307)
T 1wwk_A 156 QVAKIANALGMNILLYDPYPNE-ERAKEVNGK-FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSR 233 (307)
T ss_dssp HHHHHHHHTTCEEEEECSSCCH-HHHHHTTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred HHHHHHHHCCCEEEEECCCCCh-hhHhhcCcc-ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999998754 211223333 35899999999999999999999999999999999999999999999
Q ss_pred ChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Q 006758 256 SQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329 (632)
Q Consensus 256 G~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G 329 (632)
|+++|+++|+++|++|+|+||+||||++ |++.++|||++|||++|||+|++|.++..++...+++||.+|+ +|
T Consensus 234 g~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~-~g 307 (307)
T 1wwk_A 234 GPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKIL-KG 307 (307)
T ss_dssp GGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHH-TC
T ss_pred CcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHH-cC
Confidence 9999999999999999999999999997 6668999999999999999999999999999999999999997 44
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=458.91 Aligned_cols=308 Identities=21% Similarity=0.221 Sum_probs=261.2
Q ss_pred CEEEEeCCCCCCchHHhhccCCceEEecCCCC-Cc----ccccccceEEEEecCCCCCHHHHhcCCC-ceEEEEecccCC
Q 006758 20 PSVVALNCIEDCVLEQDSLAGVALVEHVPLGR-LA----DGKIEAAAAVLLHSLAYLPRAAQRRLRP-YQLILCLGSSDR 93 (632)
Q Consensus 20 P~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~-l~----e~~i~dAdaIli~s~~~L~~evL~~lp~-LK~I~~~gaG~D 93 (632)
++|++.... .+...+.|....++....... .+ .+.++++|+++++...++++++++++|+ ||||++.|+|+|
T Consensus 2 ~~vl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d 79 (320)
T 1gdh_A 2 KKILITWPL--PEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFD 79 (320)
T ss_dssp CEEEESSCC--CHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCT
T ss_pred cEEEEcCCC--CHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCcccc
Confidence 356665432 233456666655665543321 22 2457889999998777899999999999 999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChh
Q 006758 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSAS 173 (632)
Q Consensus 94 ~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~I 173 (632)
+||+++|+++||.|+|+|++++.+||||++++||+++|++..+++. .+.+.|.... +......++.|++|||||+|.|
T Consensus 80 ~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~-~~~g~w~~~~-~~~~~~~~l~g~~vgIIG~G~I 157 (320)
T 1gdh_A 80 HIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM-IRTRSWPGWE-PLELVGEKLDNKTLGIYGFGSI 157 (320)
T ss_dssp TBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCC-TTTTCBCCCTTCEEEEECCSHH
T ss_pred cccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHH-HHcCCCCccc-cccccCcCCCCCEEEEECcCHH
Confidence 9999999999999999999999999999999999999999999887 5889996311 1112235799999999999999
Q ss_pred hHHHHHHHhhCCCEEEEECC-CCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEE
Q 006758 174 ARALATRSLSFKMSVLYFDV-PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVN 252 (632)
Q Consensus 174 G~~vA~~LkafGm~V~~~dr-~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLIN 252 (632)
|+.+|+++++|||+|++||+ +.... .....++....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||
T Consensus 158 G~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn 236 (320)
T 1gdh_A 158 GQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVN 236 (320)
T ss_dssp HHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEE
T ss_pred HHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEE
Confidence 99999999999999999999 76432 11223444445899999999999999999999999999999999999999999
Q ss_pred cCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCC
Q 006758 253 TGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIP 332 (632)
Q Consensus 253 vgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p 332 (632)
+|||+++|+++|.++|++|+|+||+||||+.+|+.++|||++||||+|||+|++|.++..++...+ +||.+|+ +|+.+
T Consensus 237 ~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~-~g~~~ 314 (320)
T 1gdh_A 237 TARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDAL-FGGAD 314 (320)
T ss_dssp CSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHH-HTTSC
T ss_pred CCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHH-cCCCC
Confidence 999999999999999999999999999998755888999999999999999999999999999999 9999997 67655
Q ss_pred Cc
Q 006758 333 KN 334 (632)
Q Consensus 333 ~n 334 (632)
.+
T Consensus 315 ~~ 316 (320)
T 1gdh_A 315 MS 316 (320)
T ss_dssp CT
T ss_pred cc
Confidence 43
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=464.98 Aligned_cols=321 Identities=18% Similarity=0.216 Sum_probs=266.2
Q ss_pred CCCEEEEeCC-CCCCchHHhhccCCceEEecCCCCC--cccccc-----cceEEEEe------cCCCCCHHHHhcCC-Cc
Q 006758 18 PLPSVVALNC-IEDCVLEQDSLAGVALVEHVPLGRL--ADGKIE-----AAAAVLLH------SLAYLPRAAQRRLR-PY 82 (632)
Q Consensus 18 ~kP~VvvL~~-~e~~~~e~e~L~~laeV~~~~~~~l--~e~~i~-----dAdaIli~------s~~~L~~evL~~lp-~L 82 (632)
++|+|+++.. ........+.|....++..++.... ..+.+. ++|++++. ...++++++++++| +|
T Consensus 2 ~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (348)
T 2w2k_A 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL 81 (348)
T ss_dssp CCCEEEECSSCCSSCHHHHHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred CCcEEEEECCccccChHHHHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence 4678888876 3222344555655556655442111 112333 77887764 24589999999998 59
Q ss_pred eEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcC---CCCCCCCCCCcccc
Q 006758 83 QLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASG---WLGSVQPLCRGMRR 159 (632)
Q Consensus 83 K~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~---W~~~~~~~~~~~~~ 159 (632)
|+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|++..+++. .+.+. |............+
T Consensus 82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~-~~~g~~~~w~~~~~~~~~~~~~ 160 (348)
T 2w2k_A 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA-ARTGDPETFNRVHLEIGKSAHN 160 (348)
T ss_dssp CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHH-HTTCCHHHHHHHHHHHHTTCCC
T ss_pred eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHH-HHcCCCcccccccccccccCcC
Confidence 999999999999999999999999999999999999999999999999999999887 57888 93210000011257
Q ss_pred ccCcEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
|.|++|||||+|.||+.+|++++ +|||+|++||++....+.....+.....++++++++||+|++|+|++++|+++|++
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~ 240 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE 240 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCH
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhH
Confidence 99999999999999999999999 99999999999865432111124444458999999999999999999999999999
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKA 318 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a 318 (632)
+.|+.||+|++|||++||+++|+++|.++|++|+|+||++|||+++|+.+++|+.+||||+|||+|++|.++..++...+
T Consensus 241 ~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~ 320 (348)
T 2w2k_A 241 AFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLT 320 (348)
T ss_dssp HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999855778899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccccCCc
Q 006758 319 ISVLQTFFFDGVIPKNAISDTE 340 (632)
Q Consensus 319 ~~nL~~fL~~G~~p~nvVn~~~ 340 (632)
++||.+|+ .|+.|.|+||.+.
T Consensus 321 ~~ni~~~~-~g~~~~~~v~~~~ 341 (348)
T 2w2k_A 321 MTNIDRFL-LQGKPLLTPAGKV 341 (348)
T ss_dssp HHHHHHHH-HTCCCCSSBCSCC
T ss_pred HHHHHHHH-cCCCCcceecccc
Confidence 99999997 5666999999764
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-55 Score=454.63 Aligned_cols=270 Identities=17% Similarity=0.195 Sum_probs=245.0
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.+.++|+++++. .+.++++++|+||+|++.|+|+|+||++++ ++||.|+|+|++++.+||||++++||+++|++.
T Consensus 27 ~~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~ 102 (303)
T 1qp8_A 27 GDLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRII 102 (303)
T ss_dssp SCCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHH
T ss_pred hhhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHH
Confidence 4678899888764 467999999999999999999999999885 789999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
.+++. .+.+.|.... ...++.|++|||||+|.||+.+|++|++|||+|++||++.. .. +.....++++
T Consensus 103 ~~~~~-~~~g~w~~~~-----~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~-----~~~~~~~l~e 170 (303)
T 1qp8_A 103 QYGEK-MKRGDYGRDV-----EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG-----PWRFTNSLEE 170 (303)
T ss_dssp HHHHH-HHTTCCCCCS-----CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS-----SSCCBSCSHH
T ss_pred HHHHH-HHcCCCCCCC-----CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc-----CcccCCCHHH
Confidence 99887 5889996421 22479999999999999999999999999999999999875 11 2334578999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC-CC-CCCCCcccc
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA-EG-PQWMEAWVR 292 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf-E~-P~~~~~pL~ 292 (632)
++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+|||| ++ |++.++|||
T Consensus 171 ll~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~ 250 (303)
T 1qp8_A 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 250 (303)
T ss_dssp HHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHH
T ss_pred HHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 64 667789999
Q ss_pred CCCcEEEcCCCCCc--cHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCcCc
Q 006758 293 EMPNVLILPRSADY--SEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGC 342 (632)
Q Consensus 293 ~~pNVIiTPHiAg~--T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~~~ 342 (632)
++|||++|||+||+ |.++..++.+.+++||.+|+ +|+.|.|+||++ .|
T Consensus 251 ~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~-~g~~~~~~v~~~-~y 300 (303)
T 1qp8_A 251 SLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYA-TGGRPRNIAKRE-DY 300 (303)
T ss_dssp TSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHH-TTSCCSCBCCGG-GT
T ss_pred cCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCceeCHH-Hc
Confidence 99999999999998 99999999999999999997 788899999976 36
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=452.19 Aligned_cols=267 Identities=16% Similarity=0.189 Sum_probs=241.9
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.++++|+++++...++++++++++|+||+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++.
T Consensus 42 ~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~ 121 (313)
T 2ekl_A 42 NIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMY 121 (313)
T ss_dssp HHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHH
Confidence 45788999998766689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
.+++. .+++.|.. ....++.|++|||||+|.||+.+|+++++|||+|++||++..... ....++.. .++++
T Consensus 122 ~~~~~-~~~g~w~~------~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~-~~l~e 192 (313)
T 2ekl_A 122 TSMAL-AKSGIFKK------IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AEKINAKA-VSLEE 192 (313)
T ss_dssp HHHHH-HHTTCCCC------CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHHTTCEE-CCHHH
T ss_pred HHHHH-HHcCCCCC------CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HHhcCcee-cCHHH
Confidence 99887 58899952 123579999999999999999999999999999999999874321 12233433 58999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCc---cc
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEA---WV 291 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~---pL 291 (632)
++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||+++|.+++ ||
T Consensus 193 ll~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L 272 (313)
T 2ekl_A 193 LLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELEL 272 (313)
T ss_dssp HHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHH
T ss_pred HHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997444477 99
Q ss_pred cCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC
Q 006758 292 REMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (632)
Q Consensus 292 ~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~ 331 (632)
|++|||++|||+|++|.++..++...+++||.+|+ +|+.
T Consensus 273 ~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~-~g~~ 311 (313)
T 2ekl_A 273 LKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAM-KELG 311 (313)
T ss_dssp HHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred hhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 99999999999999999999999999999999997 6654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=452.81 Aligned_cols=314 Identities=22% Similarity=0.274 Sum_probs=267.2
Q ss_pred CEEEEeCCCCCCchHHhhccCCceEEecCCC-CCc----ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCc
Q 006758 20 PSVVALNCIEDCVLEQDSLAGVALVEHVPLG-RLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (632)
Q Consensus 20 P~VvvL~~~e~~~~e~e~L~~laeV~~~~~~-~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~ 94 (632)
++|++.... .....+.|....++...... ..+ .+.+.++|+++++...++++++++++|+||||++.|+|+|+
T Consensus 3 ~~il~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 80 (334)
T 2dbq_A 3 PKVFITREI--PEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDN 80 (334)
T ss_dssp CEEEESSCC--CHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTT
T ss_pred cEEEEecCC--CHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCccccc
Confidence 567765433 23345566665566654432 122 23568899999987778999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCC---CCCCCCCccccccCcEEEEEeCC
Q 006758 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLG---SVQPLCRGMRRCRGLVLGIVGRS 171 (632)
Q Consensus 95 VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~---~~~~~~~~~~~L~GktVGIIGlG 171 (632)
||+++|+++||.|+|+||+++.+||||++++||+++|++..+++. .+.+.|.. ...+......+|.|++|||||+|
T Consensus 81 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G 159 (334)
T 2dbq_A 81 IDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRF-VRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLG 159 (334)
T ss_dssp BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHH-HHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCS
T ss_pred ccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCcccccccccccccccCCCCCEEEEEccC
Confidence 999999999999999999999999999999999999999999887 47888951 11111112357999999999999
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEE
Q 006758 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (632)
Q Consensus 172 ~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI 251 (632)
.||+.+|+++++||++|++||++... ......+.. ..++++++++||+|++|+|++++|+++|+++.+..||+|++||
T Consensus 160 ~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~-~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailI 237 (334)
T 2dbq_A 160 RIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAE-FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI 237 (334)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCcc-cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEE
Confidence 99999999999999999999998754 211112333 3589999999999999999999999999999999999999999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC
Q 006758 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVI 331 (632)
Q Consensus 252 NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~ 331 (632)
|++||.++|+++|.++|++|+|+||++|||+++|+.++||+.+||||+|||+|++|.++..++...+++||.+|+ .|+.
T Consensus 238 n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~-~g~~ 316 (334)
T 2dbq_A 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFK-RGEI 316 (334)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHH-TTCC
T ss_pred ECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 999999999999999999999999999999975578899999999999999999999999999999999999996 7888
Q ss_pred CCccccCC
Q 006758 332 PKNAISDT 339 (632)
Q Consensus 332 p~nvVn~~ 339 (632)
|.|+||++
T Consensus 317 ~~~~v~~~ 324 (334)
T 2dbq_A 317 PPTLVNRE 324 (334)
T ss_dssp CTTBSCTT
T ss_pred CccccCHH
Confidence 99999965
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-54 Score=451.53 Aligned_cols=311 Identities=23% Similarity=0.348 Sum_probs=266.3
Q ss_pred CCEEEEeCCCCCCchHHhhccCCceEEecCCCCCc----ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCc
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRT 94 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~ 94 (632)
+|+|++...+ .+...+.|....++...+ . .+ .+.++++|+++++...++++++++++|+||+|++.|+|+|+
T Consensus 2 ~~~il~~~~~--~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 77 (333)
T 2d0i_A 2 RPKVGVLLKM--KREALEELKKYADVEIIL-Y-PSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDN 77 (333)
T ss_dssp CSEEEECSCC--CHHHHHHHHTTSEEEECC-S-CCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTT
T ss_pred CcEEEEECCC--CHHHHHHHHhcCCEEEeC-C-CCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCccccc
Confidence 5778887643 233456666655666544 1 22 23578899999887778999999999999999999999999
Q ss_pred cchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCc---cccccCcEEEEEeCC
Q 006758 95 VDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRG---MRRCRGLVLGIVGRS 171 (632)
Q Consensus 95 VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~---~~~L~GktVGIIGlG 171 (632)
||+++|+++||.|+|+|++++.+||||++++||+++|++..+++. .+.+.|.... ....+ ..+|.|++|||||+|
T Consensus 78 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~-~~~g~w~~~~-~~~~~~~~~~~l~g~~vgIIG~G 155 (333)
T 2d0i_A 78 IDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF-IRRGEWESHA-KIWTGFKRIESLYGKKVGILGMG 155 (333)
T ss_dssp BCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHTTCCCCHH-HHHTTSCCCCCSTTCEEEEECCS
T ss_pred ccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHH-HHcCCCCcCc-ccccCCcccCCCCcCEEEEEccC
Confidence 999999999999999999999999999999999999999999887 5889995310 00011 157999999999999
Q ss_pred hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEE
Q 006758 172 ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLV 251 (632)
Q Consensus 172 ~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI 251 (632)
.||+.+|+++++|||+|++||++... ......+.. ..++++++++||+|++|+|++++|+++|+++.++.||+| +||
T Consensus 156 ~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~-~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ili 232 (333)
T 2d0i_A 156 AIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKAR-YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLV 232 (333)
T ss_dssp HHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEE-ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCce-ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEE
Confidence 99999999999999999999998753 211122333 348999999999999999999999999999999999999 999
Q ss_pred EcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCC-cEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Q 006758 252 NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMP-NVLILPRSADYSEEVWMEIRDKAISVLQTFFFDG 329 (632)
Q Consensus 252 NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~p-NVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G 329 (632)
|+|||.++|+++|.++|++|+|+||++|||++ |++ ++||+.+| |||+|||+|++|.++..++...+++||.+|+ .|
T Consensus 233 n~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~-~g 310 (333)
T 2d0i_A 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVL-RG 310 (333)
T ss_dssp ECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHH-TT
T ss_pred ECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHH-cC
Confidence 99999999999999999999999999999997 445 89999999 9999999999999999999999999999997 78
Q ss_pred CCCCccccCCc
Q 006758 330 VIPKNAISDTE 340 (632)
Q Consensus 330 ~~p~nvVn~~~ 340 (632)
+.|.|+||++.
T Consensus 311 ~~~~~~v~~~~ 321 (333)
T 2d0i_A 311 EVPEDLVNKEV 321 (333)
T ss_dssp CCCTTBSCTTH
T ss_pred CCCcCccCHHH
Confidence 88999999764
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-53 Score=444.23 Aligned_cols=315 Identities=18% Similarity=0.182 Sum_probs=266.4
Q ss_pred CCCEEEEeCCCCCCchHHhhccCC--ceEEecCCC-CCc----ccccccceEEEEecCCCCCHHHHhcC-CCceEEEEec
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGV--ALVEHVPLG-RLA----DGKIEAAAAVLLHSLAYLPRAAQRRL-RPYQLILCLG 89 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~l--aeV~~~~~~-~l~----e~~i~dAdaIli~s~~~L~~evL~~l-p~LK~I~~~g 89 (632)
++++|++.... .....+.|... .++..++.. ..+ .+.++++|+++++...++++++++++ |+||||++.|
T Consensus 7 ~~~~il~~~~~--~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~ 84 (330)
T 2gcg_A 7 RLMKVFVTRRI--PAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMS 84 (330)
T ss_dssp CCEEEEESSCC--CHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESS
T ss_pred CCCEEEEECCC--CHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECC
Confidence 35677776532 23334555544 466554421 122 13567899999887778999999999 9999999999
Q ss_pred ccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEe
Q 006758 90 SSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVG 169 (632)
Q Consensus 90 aG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIG 169 (632)
+|+|+||+++|+++||.|+|+|++++.+||||++++||+++|++..+.+. .+.+.|.... +......++.|++|||||
T Consensus 85 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~-~~~~~w~~~~-~~~~~~~~l~g~~vgIIG 162 (330)
T 2gcg_A 85 VGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEE-VKNGGWTSWK-PLWLCGYGLTQSTVGIIG 162 (330)
T ss_dssp SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCSCC-TTSSCBCCCTTCEEEEEC
T ss_pred cccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCcccC-cccccCcCCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999887 5889996421 111223679999999999
Q ss_pred CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcE
Q 006758 170 RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 170 lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
+|.||+.+|+++++||++|++||++....+.....+.... ++++++++||+|++|+|.+++|+++|+++.++.||+|++
T Consensus 163 ~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gai 241 (330)
T 2gcg_A 163 LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAV 241 (330)
T ss_dssp CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCE
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcE
Confidence 9999999999999999999999987643321112233333 899999999999999999999999999999999999999
Q ss_pred EEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC-CCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHc
Q 006758 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFD 328 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~ 328 (632)
|||++||.++|+++|.++|++|+|.||+||||++ |++.++|||++|||++|||+|+.|.++..++...+++|+.+|+ +
T Consensus 242 lIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~-~ 320 (330)
T 2gcg_A 242 FINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGL-R 320 (330)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH-H
T ss_pred EEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHH-c
Confidence 9999999999999999999999999999999987 6688999999999999999999999999999999999999997 7
Q ss_pred CCCCCccccC
Q 006758 329 GVIPKNAISD 338 (632)
Q Consensus 329 G~~p~nvVn~ 338 (632)
|+.+.|+||.
T Consensus 321 g~~~~~~v~~ 330 (330)
T 2gcg_A 321 GEPMPSELKL 330 (330)
T ss_dssp TCCCTTEECC
T ss_pred CCCCCCCCCC
Confidence 8888999874
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-54 Score=458.32 Aligned_cols=276 Identities=20% Similarity=0.261 Sum_probs=244.1
Q ss_pred EEEEeCCCCCCchHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHH
Q 006758 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa 100 (632)
+|++.+. .+...+.|+.+.++..++...++.+.+.++|++++++.+++++++++ .++||||++.|+|+||||+++|
T Consensus 5 kIl~~~~---~p~~~~~~~~~~~v~~~~~~~~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~ 80 (381)
T 3oet_A 5 KILVDEN---MPYARELFSRLGEVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDHVDEAWL 80 (381)
T ss_dssp EEEEETT---STTHHHHHTTSSEEEEECC---CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTTBCHHHH
T ss_pred EEEECCC---CcHHHHHHhhCCcEEEeCCCCCCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccccCHHHH
Confidence 5776654 34567788888888887766677777999999999988889999999 5669999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHH
Q 006758 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (632)
Q Consensus 101 ~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (632)
+++||.|+|+||+++.+||||+++++|++.|+. ..+|.|+||||||+|+||+.+|++
T Consensus 81 ~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~-----------------------g~~l~gktvGIIGlG~IG~~vA~~ 137 (381)
T 3oet_A 81 KQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-----------------------GFSLRDRTIGIVGVGNVGSRLQTR 137 (381)
T ss_dssp HHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT-----------------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred HhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc-----------------------CCccCCCEEEEEeECHHHHHHHHH
Confidence 999999999999999999999999999999862 035899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh----hHhhccHHHHhccCCCcEEEEcCCC
Q 006758 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 181 LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~----T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
|++|||+|++||++..... ......++++++++||||++|+|+|++ |+++|+++.|+.||+|++|||+|||
T Consensus 138 l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG 212 (381)
T 3oet_A 138 LEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212 (381)
T ss_dssp HHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCG
T ss_pred HHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCC
Confidence 9999999999998642211 123457999999999999999999999 9999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
++||++||++||++|+|+||+||||++||.++.+||.++ +++|||+||+|.++..++...+++||.+|| +|.
T Consensus 213 ~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l-~~~ 284 (381)
T 3oet_A 213 PVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFI-GRE 284 (381)
T ss_dssp GGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred cccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHH-cCC
Confidence 999999999999999999999999998666677888774 899999999999999999999999999996 554
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=435.66 Aligned_cols=253 Identities=18% Similarity=0.181 Sum_probs=225.9
Q ss_pred cccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcH
Q 006758 55 GKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~ 134 (632)
+.+.++|++++.. ..+ ++|+||||++.|+|+|+||+++|++++|.++| ++.++.+||||++++||+++|++.
T Consensus 30 ~~~~~ad~li~~~-~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~ 101 (290)
T 3gvx_A 30 PDYYDAEAQVIKD-RYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNIL 101 (290)
T ss_dssp TSCCCCSEEEESS-CCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cchhhhhhhhhhh-hhh------hhhhhHHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhh
Confidence 4678899998843 233 78999999999999999999999887665555 588999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHH
Q 006758 135 LLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLND 214 (632)
Q Consensus 135 ~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~e 214 (632)
.+++. .+.+.|.... ..+|.|+||||||+|.||+.+|++|++|||+|++||++...... .....++++
T Consensus 102 ~~~~~-~~~g~w~~~~------~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~e 169 (290)
T 3gvx_A 102 ENNEL-MKAGIFRQSP------TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPAD 169 (290)
T ss_dssp HHHHH-HHTTCCCCCC------CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHH
T ss_pred hhhhH-hhhcccccCC------ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHH
Confidence 99887 5889997532 25799999999999999999999999999999999998754321 334569999
Q ss_pred HhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCC
Q 006758 215 LLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM 294 (632)
Q Consensus 215 LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~ 294 (632)
++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||+++|. +|||++
T Consensus 170 ll~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~pL~~~ 247 (290)
T 3gvx_A 170 LFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE--ITETNL 247 (290)
T ss_dssp HHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS--CCSCCC
T ss_pred HhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc--cchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998554 899999
Q ss_pred CcEEEcCCCC-CccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 295 PNVLILPRSA-DYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 295 pNVIiTPHiA-g~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
|||++|||+| ++|.++..++.+.+++||.+|+ +|+
T Consensus 248 ~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~-~~~ 283 (290)
T 3gvx_A 248 RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFF-EGE 283 (290)
T ss_dssp SSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHT-C--
T ss_pred hhhhcCccccCCccchHHHHHHHHHHHHHHhhh-cCC
Confidence 9999999999 9999999999999999999996 665
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=457.00 Aligned_cols=312 Identities=21% Similarity=0.258 Sum_probs=270.1
Q ss_pred CCCEEEEeCCCCCCchHHhhccCCceEEecCCCCC--cccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCcc
Q 006758 18 PLPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRL--ADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV 95 (632)
Q Consensus 18 ~kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l--~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~V 95 (632)
++++|++.+.+. +...+.|+...++...+.... ..+.+.++|++++++.+++++++++++|+||||++.|+|+|||
T Consensus 3 ~~~~vl~~~~~~--~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 80 (529)
T 1ygy_A 3 SLPVVLIADKLA--PSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNV 80 (529)
T ss_dssp CCCEEEECSSCC--GGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred CCcEEEEeCCCC--HHHHHHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcCcc
Confidence 356788776532 333456666566766542111 1245789999999888899999999999999999999999999
Q ss_pred chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhH
Q 006758 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASAR 175 (632)
Q Consensus 96 D~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~ 175 (632)
|+++|+++||.|+|+|++|+.+||||++++||+++|+++.++.. .+.+.|.+.. +...+|.|++|||||+|.||+
T Consensus 81 d~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~-~~~g~w~~~~----~~~~~l~g~~vgIIG~G~IG~ 155 (529)
T 1ygy_A 81 DVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADAS-LREHTWKRSS----FSGTEIFGKTVGVVGLGRIGQ 155 (529)
T ss_dssp CHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCGGG----CCBCCCTTCEEEEECCSHHHH
T ss_pred CHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHH-HHhCCCcccC----cCccccCCCEEEEEeeCHHHH
Confidence 99999999999999999999999999999999999999999887 5889997431 123579999999999999999
Q ss_pred HHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 176 ALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 176 ~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+|++|++|||+|++||++... ......++... ++++++++||+|++|+|++++|+++|+++.+..||+|++|||++|
T Consensus 156 ~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~ar 233 (529)
T 1ygy_A 156 LVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR 233 (529)
T ss_dssp HHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred HHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCC
Confidence 9999999999999999998632 21222344443 899999999999999999999999999999999999999999999
Q ss_pred ChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006758 256 SQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGVIPKNA 335 (632)
Q Consensus 256 G~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~~p~nv 335 (632)
|.++|+.+|.++|++|+|+||++|||+.+|+.++|||++|||++|||+++.|.++..++...+++|+.+|+ .|..+.|+
T Consensus 234 g~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l-~~~~~~~~ 312 (529)
T 1ygy_A 234 GGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL-AGEFVPDA 312 (529)
T ss_dssp TTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHH-TTCCCTTB
T ss_pred CchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCcc
Confidence 99999999999999999999999999986667999999999999999999999999999999999999996 78888899
Q ss_pred ccCC
Q 006758 336 ISDT 339 (632)
Q Consensus 336 Vn~~ 339 (632)
||..
T Consensus 313 v~~~ 316 (529)
T 1ygy_A 313 VNVG 316 (529)
T ss_dssp CSCC
T ss_pred cCCc
Confidence 9876
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=442.14 Aligned_cols=276 Identities=21% Similarity=0.262 Sum_probs=242.7
Q ss_pred EEEEeCCCCCCchHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHH
Q 006758 21 SVVALNCIEDCVLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALA 100 (632)
Q Consensus 21 ~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa 100 (632)
+|++.... +...+.|+...++...+...+..+.++++|++++++.+++++++++ +|+||||++.|+|+||||++++
T Consensus 2 kil~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~~~~ 77 (380)
T 2o4c_A 2 RILADENI---PVVDAFFADQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDLDYF 77 (380)
T ss_dssp EEEEETTC---TTHHHHHGGGSEEEEECGGGCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCHHHH
T ss_pred EEEEecCc---hHHHHHHHhCCcEEEecCCcCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhHHHH
Confidence 45665433 3345666666677666654555567899999999988899999999 9999999999999999999999
Q ss_pred HhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHH
Q 006758 101 ADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATR 180 (632)
Q Consensus 101 ~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~ 180 (632)
+++||.|+|+||+++.+||||++++||++.|++ . .+|.|++|||||+|+||+.+|++
T Consensus 78 ~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~-------------~----------~~l~g~tvGIIGlG~IG~~vA~~ 134 (380)
T 2o4c_A 78 AEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR-------------G----------ADLAERTYGVVGAGQVGGRLVEV 134 (380)
T ss_dssp HHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH-------------T----------CCGGGCEEEEECCSHHHHHHHHH
T ss_pred HhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh-------------h----------cccCCCEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999862 1 25899999999999999999999
Q ss_pred HhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh----hHhhccHHHHhccCCCcEEEEcCCC
Q 006758 181 SLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE----TIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 181 LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~----T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
|++|||+|++||++.... ..+. ...++++++++||+|++|+|++++ |+++|+++.|+.||+|++|||+|||
T Consensus 135 l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG 209 (380)
T 2o4c_A 135 LRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG 209 (380)
T ss_dssp HHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCG
T ss_pred HHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCC
Confidence 999999999999865321 1122 346999999999999999999999 9999999999999999999999999
Q ss_pred hhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Q 006758 257 QLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPRSADYSEEVWMEIRDKAISVLQTFFFDGV 330 (632)
Q Consensus 257 ~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL~~G~ 330 (632)
+++|+++|+++|++|+|.||+||||++||.++++|+. +||++|||+||+|.++..++...+++|+.+|+ +|.
T Consensus 210 ~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l-~g~ 281 (380)
T 2o4c_A 210 AVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWR-GIA 281 (380)
T ss_dssp GGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHH-TCC
T ss_pred cccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHH-cCC
Confidence 9999999999999999999999999986667778887 59999999999999999999999999999997 665
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-33 Score=304.06 Aligned_cols=231 Identities=10% Similarity=0.013 Sum_probs=191.7
Q ss_pred CCCceEEE-EecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCcc
Q 006758 79 LRPYQLIL-CLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGM 157 (632)
Q Consensus 79 lp~LK~I~-~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~ 157 (632)
+++++.|+ .+++|+|++ .++.++||.++|++++++ +||| +++|++....+. ...+ |.+. ..
T Consensus 191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~-l~~g-w~r~------~~ 252 (479)
T 1v8b_A 191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHS-LPDG-LMRA------TD 252 (479)
T ss_dssp HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHH-HHHH-HHHH------HC
T ss_pred hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHH-Hhhh-hhhc------cc
Confidence 37888888 778999988 788999999999999999 9999 345776655554 3444 7531 12
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.++.|++|||||+|.||+.+|++|++|||+|++||++..........+. .+.++++++++||+|++|+ .|+++|+
T Consensus 253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~-~~~~l~ell~~aDiVi~~~----~t~~lI~ 327 (479)
T 1v8b_A 253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCT----GNVDVIK 327 (479)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECC----SSSSSBC
T ss_pred cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC-EecCHHHHHhcCCEEEECC----ChhhhcC
Confidence 4689999999999999999999999999999999998743211222333 3469999999999999995 7899999
Q ss_pred HHHHhccCCCcEEEEcCCChh-hcHHHHHH--HHHcCCcceEEeecCCCCCCCCccccCC--CcEEEcCCCC-CccHH-H
Q 006758 238 AECLQHIKPGAFLVNTGSSQL-LDDCAVKQ--LLIDGTLAGCALDGAEGPQWMEAWVREM--PNVLILPRSA-DYSEE-V 310 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i-VDe~AL~~--AL~sg~I~GAaLDVfE~P~~~~~pL~~~--pNVIiTPHiA-g~T~e-a 310 (632)
.+.|+.||+|++|||+|||.+ ||+++|.+ ||++|+|+ +++|||+ ++.++|||.+ |||++| |+| +++.+ .
T Consensus 328 ~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~p--lp~~~~l~~l~~~nvv~t-H~atghp~e~~ 403 (479)
T 1v8b_A 328 LEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRIT--LPNGNKIIVLARGRLLNL-GCATGHPAFVM 403 (479)
T ss_dssp HHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEE--CTTSCEEEEEGGGSBHHH-HSSCCSCHHHH
T ss_pred HHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEE--CCCCCeeeEecCCCEEEE-eccCCCCchhH
Confidence 999999999999999999999 99999999 99999998 9999994 4457888888 999999 999 66755 6
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCCcccc
Q 006758 311 WMEIRDKAISVLQTFFFDGV--IPKNAIS 337 (632)
Q Consensus 311 ~~~~~~~a~~nL~~fL~~G~--~p~nvVn 337 (632)
...+...+++|+..|+ +|. .+.|.|+
T Consensus 404 ~~s~a~~~~~ni~~~~-~g~~~~l~n~V~ 431 (479)
T 1v8b_A 404 SFSFCNQTFAQLDLWQ-NKDTNKYENKVY 431 (479)
T ss_dssp HHHHHHHHHHHHHHHH-TTTSSSCCSSEE
T ss_pred HHHHHHHHHHHHHHHH-cCCCCcCCcceE
Confidence 7788889999999996 666 6666554
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-33 Score=306.45 Aligned_cols=229 Identities=10% Similarity=0.012 Sum_probs=187.4
Q ss_pred CCceEEE-EecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccc
Q 006758 80 RPYQLIL-CLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMR 158 (632)
Q Consensus 80 p~LK~I~-~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~ 158 (632)
++++.|+ ..++|+|++ .++.++||.|+|++++++ +|||+. +|++...... ...+ |.+. ...
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~-l~~g-w~~~------~g~ 273 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRES-LVDG-IKRA------TDV 273 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTT-HHHH-HHHH------HCC
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhh-hhhh-hhhc------ccc
Confidence 7788888 778999988 788999999999999999 999954 3555443332 2233 6421 124
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++.|++|||||+|.||+.+|++|++|||+|++||++..........+. .+.++++++++||+|++|+ .|+++|++
T Consensus 274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~-~~~~l~ell~~aDiVi~~~----~t~~lI~~ 348 (494)
T 3d64_A 274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGY-RVVTMEYAADKADIFVTAT----GNYHVINH 348 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECS----SSSCSBCH
T ss_pred ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCC-EeCCHHHHHhcCCEEEECC----CcccccCH
Confidence 689999999999999999999999999999999998643211122233 3468999999999999997 68899999
Q ss_pred HHHhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCC--CcEEEcCCCC-CccHH-HHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREM--PNVLILPRSA-DYSEE-VWME 313 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~i-VDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~--pNVIiTPHiA-g~T~e-a~~~ 313 (632)
+.|+.||+|++|||+|||.+ ||+++| +||++|+|+ +++|++ |++.++|||.+ |||++| |+| +++.+ ....
T Consensus 349 ~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~--plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~ 423 (494)
T 3d64_A 349 DHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI--IFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNS 423 (494)
T ss_dssp HHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE--ECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHH
T ss_pred HHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE--ECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHH
Confidence 99999999999999999999 699999 999999998 778877 55567899988 999999 999 66644 6778
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccc
Q 006758 314 IRDKAISVLQTFFFDGVIPKNAIS 337 (632)
Q Consensus 314 ~~~~a~~nL~~fL~~G~~p~nvVn 337 (632)
+...+++|+..|+ +|..+.|.|+
T Consensus 424 ~a~~~~~ni~~~~-~g~~~~n~V~ 446 (494)
T 3d64_A 424 FTNQTLAQIELFT-RGGEYANKVY 446 (494)
T ss_dssp HHHHHHHHHHHHH-HGGGSCSSEE
T ss_pred HHHHHHHHHHHHH-cCCCCCCcee
Confidence 8899999999997 5666777775
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=231.40 Aligned_cols=170 Identities=11% Similarity=0.043 Sum_probs=143.2
Q ss_pred cccccceEEEEe----------------cCCCCCHHHHhcCCCceEEEEecccCCccch-HHHHhcCcEEEEcC------
Q 006758 55 GKIEAAAAVLLH----------------SLAYLPRAAQRRLRPYQLILCLGSSDRTVDS-ALAADLGLRLIHVD------ 111 (632)
Q Consensus 55 ~~i~dAdaIli~----------------s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~-~aa~erGI~VtNvp------ 111 (632)
+.++++|+++++ ...++++++++++|+||+|+ +|+|++|+ ++|+++||.|+|++
T Consensus 54 ~~~~~~d~ii~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~ 130 (293)
T 3d4o_A 54 VDWNTVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIA 130 (293)
T ss_dssp CCGGGCSEEECCTTCCCTTCBCCBSSCSCCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHH
T ss_pred HHHhcCCEEEeccccccCCceeecccccCCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceee
Confidence 457789999885 23468999999999999987 79999998 89999999999998
Q ss_pred CCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEE
Q 006758 112 TSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYF 191 (632)
Q Consensus 112 g~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~ 191 (632)
++++.+|||++++++|... ..++.|++|||||+|.||+.+|++|++|||+|++|
T Consensus 131 ~~~~~svae~a~~~~l~~~--------------------------~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~ 184 (293)
T 3d4o_A 131 IYNSIPTAEGTIMMAIQHT--------------------------DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVG 184 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------------------SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred eeccHhHHHHHHHHHHHhc--------------------------CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence 8999999999999988531 13589999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCcee--cCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 192 DVPEGKGKVTFPSAARR--MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 192 dr~~~~~~~~~~~g~~~--~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
|++..........+... ..++++++++||+|++|+|+ ++++++.|+.||+|++|||++||..
T Consensus 185 dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 185 ARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG 248 (293)
T ss_dssp ESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred ECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence 99864321111123222 35789999999999999997 7899999999999999999999764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=209.62 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=136.1
Q ss_pred cccccceEEEEe----c----------CCC--CCHHHHhcCCCceEEEEecccCCccc-hHHHHhcCcEEEEcCCCChHH
Q 006758 55 GKIEAAAAVLLH----S----------LAY--LPRAAQRRLRPYQLILCLGSSDRTVD-SALAADLGLRLIHVDTSRAEE 117 (632)
Q Consensus 55 ~~i~dAdaIli~----s----------~~~--L~~evL~~lp~LK~I~~~gaG~D~VD-~~aa~erGI~VtNvpg~na~a 117 (632)
+.++++|+++++ . ..+ +++++++.+|++++|+ +|+|++| +++|.++||.|+|+|+++ +
T Consensus 56 ~~~~~~d~ii~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~ 130 (300)
T 2rir_A 56 IPFQQIDSIILPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--D 130 (300)
T ss_dssp SCGGGCSEEECCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--H
T ss_pred HHHhcCCEEEeccccccCCcccccccccCCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--c
Confidence 457789998872 1 345 8899999999999988 8999999 999999999999999975 3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 118 VAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
| ++.|+++.. .+.|..... ....++.|++|||||+|.||+.+|++|++||++|++||++...
T Consensus 131 v---------~~~r~~~~~------~g~~~~~~~---~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~ 192 (300)
T 2rir_A 131 I---------AIYNSIPTV------EGTIMLAIQ---HTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAH 192 (300)
T ss_dssp H---------HHHHHHHHH------HHHHHHHHH---TCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred e---------EEEcCccHH------HHHHHHHHH---hcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 3 234555433 223421100 1124689999999999999999999999999999999998643
Q ss_pred CCcccccCce--ecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 198 GKVTFPSAAR--RMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 198 ~~~~~~~g~~--~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
.......+.. ...++++++++||+|++|+|+ ++++++.|+.||+|++|||++||+.
T Consensus 193 ~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 193 LARITEMGLVPFHTDELKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp HHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred HHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 2111111222 236899999999999999997 7899999999999999999999864
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-23 Score=225.60 Aligned_cols=224 Identities=11% Similarity=0.003 Sum_probs=171.6
Q ss_pred EEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcE
Q 006758 85 ILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLV 164 (632)
Q Consensus 85 I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~Gkt 164 (632)
+-..|+|+|++ .++.++||.++|++++++ +|||+. +|++...... ... .|.+. ....+.|++
T Consensus 215 veetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s-~~~-g~~r~------~~~~l~Gkt 276 (494)
T 3ce6_A 215 TEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHS-LID-GINRG------TDALIGGKK 276 (494)
T ss_dssp EECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHH-HHH-HHHHH------HCCCCTTCE
T ss_pred EEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------Hhhhhhhhhh-hhH-HHHhc------cCCCCCcCE
Confidence 44778999998 678899999999999999 999953 3343322221 111 14211 012478999
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhcc
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~M 244 (632)
|+|||+|.||+.+|++++++|++|+++|+++.........++. +.++++++..+|+|++|++ +.++|+.+.|+.|
T Consensus 277 V~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~m 351 (494)
T 3ce6_A 277 VLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHIKAM 351 (494)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHS
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHHHhc
Confidence 9999999999999999999999999999986443222233443 4588999999999999975 4678998999999
Q ss_pred CCCcEEEEcCCChh-hcHHHHHH-HHHcCCcceEEeecCCCCC-CCCccccCCCcEE----EcCCCCCccHHHHHHHHHH
Q 006758 245 KPGAFLVNTGSSQL-LDDCAVKQ-LLIDGTLAGCALDGAEGPQ-WMEAWVREMPNVL----ILPRSADYSEEVWMEIRDK 317 (632)
Q Consensus 245 K~GAvLINvgRG~i-VDe~AL~~-AL~sg~I~GAaLDVfE~P~-~~~~pL~~~pNVI----iTPHiAg~T~ea~~~~~~~ 317 (632)
|+|++|||+||+.+ +|..+|+. +|+++.|. +++|+++.|+ ...-+++..+|++ +|||+++.+.+. +...
T Consensus 352 k~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~~~q 427 (494)
T 3ce6_A 352 KDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNS---FANQ 427 (494)
T ss_dssp CTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHH---HHHH
T ss_pred CCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHH---HHHH
Confidence 99999999999999 99999988 88888888 6789987543 2223467778888 999999988765 3668
Q ss_pred HHHHHHHHHHcCCCCCccc
Q 006758 318 AISVLQTFFFDGVIPKNAI 336 (632)
Q Consensus 318 a~~nL~~fL~~G~~p~nvV 336 (632)
+++++..|+ +|+.+.+.|
T Consensus 428 a~~ai~~~~-~g~~~~~~V 445 (494)
T 3ce6_A 428 TIAQIELWT-KNDEYDNEV 445 (494)
T ss_dssp HHHHHHHHH-TGGGCCSSE
T ss_pred HHHHHHHHH-cCCCCCCEE
Confidence 899999986 665555555
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-22 Score=210.56 Aligned_cols=256 Identities=14% Similarity=0.073 Sum_probs=182.1
Q ss_pred ccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEE----------EcCCCChHHHHHHHHHH
Q 006758 56 KIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLI----------HVDTSRAEEIADTVMAL 125 (632)
Q Consensus 56 ~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~Vt----------Nvpg~na~aVAE~ALal 125 (632)
.+.++|+|+ ....++++++....+...++.....++|...++++.++||+++ |+|.+ .++||++..+
T Consensus 64 ~~~~adii~-~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~ 140 (377)
T 2vhw_A 64 VWADADLLL-KVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRL 140 (377)
T ss_dssp HHHHCSEEE-CSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHH
T ss_pred HhccCCEEE-EeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHH
Confidence 455678664 4445677777776777777777677888888899999999998 44554 4566999855
Q ss_pred HHHHH-hhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-
Q 006758 126 LLGLL-RRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP- 203 (632)
Q Consensus 126 iLal~-Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~- 203 (632)
++.+. |++.. ...+.|... .+..++.|++|+|+|+|.||+.+|+.++++|++|+++|++....+....
T Consensus 141 a~~~a~r~l~~-----~~~g~~~~~-----~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~ 210 (377)
T 2vhw_A 141 AAQVGAYHLMR-----TQGGRGVLM-----GGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAE 210 (377)
T ss_dssp HHHHHHHHTSG-----GGTSCCCCT-----TCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hcCCCcccc-----cCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh
Confidence 54444 66632 223333211 1234689999999999999999999999999999999998643221111
Q ss_pred cCce------ecCCHHHHhccCCEEEEcc--CCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 006758 204 SAAR------RMDTLNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (632)
Q Consensus 204 ~g~~------~~~sL~eLL~~ADVV~l~l--PlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~G 275 (632)
.+.. ...++++++..+|+|++++ |.+ +|.++|+.+.++.||+|++|||+|.. .| |
T Consensus 211 ~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~-------------~G---g 273 (377)
T 2vhw_A 211 FCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAID-------------QG---G 273 (377)
T ss_dssp TTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGG-------------TT---C
T ss_pred cCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecC-------------CC---C
Confidence 1111 1346788899999999976 555 78899999999999999999999931 11 1
Q ss_pred EEeecCCC--CCCCCccccCCCcEE--EcCCCCCccHHH-H--------HHHHHHHHHHHHHHHHcCCCCCccccCCcCc
Q 006758 276 CALDGAEG--PQWMEAWVREMPNVL--ILPRSADYSEEV-W--------MEIRDKAISVLQTFFFDGVIPKNAISDTEGC 342 (632)
Q Consensus 276 AaLDVfE~--P~~~~~pL~~~pNVI--iTPHiAg~T~ea-~--------~~~~~~a~~nL~~fL~~G~~p~nvVn~~~~~ 342 (632)
|||. |.+.+.|++..+||+ +|||+++.+... . ..+.+.+.+++...+..++.+.+.|+..+||
T Consensus 274 ----v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~v~~~~G~ 349 (377)
T 2vhw_A 274 ----CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGA 349 (377)
T ss_dssp ----SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEEEETTE
T ss_pred ----ccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCcEEeeCCE
Confidence 6765 666788999999998 999999988652 2 2233333344433345666788999999999
Q ss_pred cCc
Q 006758 343 ENE 345 (632)
Q Consensus 343 ~~~ 345 (632)
...
T Consensus 350 i~~ 352 (377)
T 2vhw_A 350 LLS 352 (377)
T ss_dssp ECC
T ss_pred EcC
Confidence 655
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=183.67 Aligned_cols=257 Identities=15% Similarity=0.155 Sum_probs=166.8
Q ss_pred ccccceEEEEecCCCCCHHHHhcC-CCceEEEEecccCCccchHHHHhcCcEEE---EcCCC-Ch----HHHHHHHH--H
Q 006758 56 KIEAAAAVLLHSLAYLPRAAQRRL-RPYQLILCLGSSDRTVDSALAADLGLRLI---HVDTS-RA----EEIADTVM--A 124 (632)
Q Consensus 56 ~i~dAdaIli~s~~~L~~evL~~l-p~LK~I~~~gaG~D~VD~~aa~erGI~Vt---Nvpg~-na----~aVAE~AL--a 124 (632)
.+ ++|+|+.. ..++++ .+..+ +.+++|.....+.|..+++++.++||.++ +++.. .. .++++.+- +
T Consensus 63 ~~-~ad~il~v-k~p~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~a 139 (369)
T 2eez_A 63 AW-GAEMVVKV-KEPLPE-EYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMA 139 (369)
T ss_dssp HT-TSSEEECS-SCCCGG-GGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHH
T ss_pred ee-cCCEEEEE-CCCCHH-HHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHH
Confidence 35 68886633 335544 46666 67899998889999999999999999998 44432 11 44555443 3
Q ss_pred HHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-
Q 006758 125 LLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP- 203 (632)
Q Consensus 125 liLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~- 203 (632)
.++++. .+.... ...+.|. .+...+.+++|+|+|.|.||+.+|+.++++|++|+++|++....+....
T Consensus 140 v~~a~~-~l~~~~---~g~~~~~-------~~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~ 208 (369)
T 2eez_A 140 PQVGAQ-FLEKPK---GGRGVLL-------GGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV 208 (369)
T ss_dssp HHHHHH-HTSGGG---TSCCCCT-------TCBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHH-HHHHhc---CCCceec-------CCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence 333222 221110 0011222 1224689999999999999999999999999999999988643221111
Q ss_pred cCce------ecCCHHHHhccCCEEEEccCCCh-hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceE
Q 006758 204 SAAR------RMDTLNDLLAASDVISLHCAVTD-ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGC 276 (632)
Q Consensus 204 ~g~~------~~~sL~eLL~~ADVV~l~lPlT~-~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GA 276 (632)
.+.. ...++++++..+|+|+.|++.+. .+..++..+.+..||+|++|||++.. .| |+
T Consensus 209 ~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~ 272 (369)
T 2eez_A 209 FGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC 272 (369)
T ss_dssp TTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC----------------------
T ss_pred cCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC
Confidence 1111 13467788999999999999876 68888999999999999999999831 12 44
Q ss_pred EeecCCCCCCCCccccCCCcEE---------EcCCCCCc--cHHHHHHHHHHHHHHHHHHHHcCCCCCccccCCcCccCc
Q 006758 277 ALDGAEGPQWMEAWVREMPNVL---------ILPRSADY--SEEVWMEIRDKAISVLQTFFFDGVIPKNAISDTEGCENE 345 (632)
Q Consensus 277 aLDVfE~P~~~~~pL~~~pNVI---------iTPHiAg~--T~ea~~~~~~~a~~nL~~fL~~G~~p~nvVn~~~~~~~~ 345 (632)
+|+++ |.+.+.|++..+||+ +|||+|+. +.+.+..+.+.+.+++..+ ..++.+.+.++..+||...
T Consensus 273 -~d~~e-p~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~-~~~~~l~~~~~~~~G~~~~ 349 (369)
T 2eez_A 273 -VETIR-PTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDAL-LEDAALLKGLNTHKGRLTH 349 (369)
T ss_dssp ---------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHH-HSCHHHHTTEEEETTEECC
T ss_pred -CCccc-CCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhh-hcChHHhcCEEeeCCEEcC
Confidence 99994 445667888889999 78998875 5667788888888888665 5888788899988888544
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-19 Score=193.37 Aligned_cols=153 Identities=17% Similarity=0.154 Sum_probs=122.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhh-CCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCE-EEEccCCChhhHhhcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLS-FKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDV-ISLHCAVTDETIQIIN 237 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~Lka-fGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADV-V~l~lPlT~~T~~lI~ 237 (632)
|.|+||||+|+|+||+.+|++|++ |||+|+++++.... .+.. . ..+++++++.+|. .++ +|+ ++|++ |+
T Consensus 210 l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~---~~~~--~-gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~ 280 (419)
T 1gtm_A 210 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG---IYNP--D-GLNADEVLKWKNEHGSV-KDF-PGATN-IT 280 (419)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE---EEEE--E-EECHHHHHHHHHHHSSS-TTC-TTSEE-EC
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc---ccCc--c-CCCHHHHHHHHHhcCEe-ecC-ccCee-eC
Confidence 899999999999999999999999 99999999543211 1111 1 1267777776554 233 677 67888 89
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCC-ccccCCCcEEEcCCC----C--------
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWME-AWVREMPNVLILPRS----A-------- 304 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~-~pL~~~pNVIiTPHi----A-------- 304 (632)
.+.|..||+ .+|||++||.+||+++ +++|+.+.|.+++ .+|++++ ++|+..+||++|||+ |
T Consensus 281 ~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E 354 (419)
T 1gtm_A 281 NEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFE 354 (419)
T ss_dssp HHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHH
T ss_pred HHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeeh
Confidence 999999998 6999999999999999 6999999999887 3355443 689999999999999 6
Q ss_pred ---------CccHHHHHHHHHHHHHHHHHHHH
Q 006758 305 ---------DYSEEVWMEIRDKAISVLQTFFF 327 (632)
Q Consensus 305 ---------g~T~ea~~~~~~~a~~nL~~fL~ 327 (632)
|.++++..++...+.+++.+++.
T Consensus 355 ~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~ 386 (419)
T 1gtm_A 355 WVQNITGYYWTIEEVRERLDKKMTKAFYDVYN 386 (419)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888873
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=172.90 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=109.4
Q ss_pred HHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHH
Q 006758 99 LAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178 (632)
Q Consensus 99 aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA 178 (632)
...+++|+|+|++...+....+...+..-.+...+ .. .. ...+.|++|||+|+|.||+.+|
T Consensus 167 ~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi----~r---at------------g~~L~GktVgIiG~G~IG~~vA 227 (436)
T 3h9u_A 167 QRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI----KR---AT------------DVMIAGKTACVCGYGDVGKGCA 227 (436)
T ss_dssp HHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH----HH---HH------------CCCCTTCEEEEECCSHHHHHHH
T ss_pred HcCCCCCceEeechhhhhhhhhccccchHHHHHHH----HH---hc------------CCcccCCEEEEEeeCHHHHHHH
Confidence 34568999999987655554444433333332222 11 00 1358999999999999999999
Q ss_pred HHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 179 ~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
++|++|||+|+++|+++.........+. .+.+++++++.||||++ ++.|.++|+++.|+.||+|++|||+|||.+
T Consensus 228 ~~Lka~Ga~Viv~D~~p~~a~~A~~~G~-~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 228 AALRGFGARVVVTEVDPINALQAAMEGY-QVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTTEEEEECSSSGG
T ss_pred HHHHHCCCEEEEECCChhhhHHHHHhCC-eecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCCcEEEEeCCCCC
Confidence 9999999999999997633221122233 34699999999999996 456889999999999999999999999997
Q ss_pred -hcHHHHHHH
Q 006758 259 -LDDCAVKQL 267 (632)
Q Consensus 259 -VDe~AL~~A 267 (632)
||.++|.+.
T Consensus 303 EID~~~L~~~ 312 (436)
T 3h9u_A 303 EIQVAWLKAN 312 (436)
T ss_dssp GBCHHHHHHH
T ss_pred ccCHHHHHhh
Confidence 999998764
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-16 Score=168.42 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=132.6
Q ss_pred ceEEEEecCCCCCHHHHhcC-CCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHH
Q 006758 60 AAAVLLHSLAYLPRAAQRRL-RPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLAR 138 (632)
Q Consensus 60 AdaIli~s~~~L~~evL~~l-p~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~ 138 (632)
+|+|+.. ..+ +.+.++.+ +++++|...+.|+|++|++++.++||++++. +.|+|++.++.|.+++.+.....
T Consensus 73 adiil~v-k~p-~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~-----e~v~~~~~a~~l~~l~~~a~~ag 145 (401)
T 1x13_A 73 SEIILKV-NAP-LDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAM-----DSVPRISRAQSLDALSSMANIAG 145 (401)
T ss_dssp SSEEECS-SCC-CHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEG-----GGCCCSGGGGGGCHHHHHHHHHH
T ss_pred CCeEEEe-CCC-CHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEe-----ehhhhhhhhcccchHHHHHHHHH
Confidence 7776644 323 46778887 6899999999999999999999999999753 55566555553333333322211
Q ss_pred -HHHHhcCCC-CCCCC-CCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecC-----
Q 006758 139 -HALSASGWL-GSVQP-LCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMD----- 210 (632)
Q Consensus 139 -~~~~~g~W~-~~~~~-~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~----- 210 (632)
.....+.|. ....+ ......++.|++|+|||+|.||..+++.++++|++|+++|++....+.....+...+.
T Consensus 146 ~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~ 225 (401)
T 1x13_A 146 YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE 225 (401)
T ss_dssp HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC----
T ss_pred HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccc
Confidence 011112221 11000 0000115789999999999999999999999999999999986532211112322211
Q ss_pred ----------------------CHHHHhccCCEEEEc--cCCChhhHhhccHHHHhccCCCcEEEEcC--CChhhcH
Q 006758 211 ----------------------TLNDLLAASDVISLH--CAVTDETIQIINAECLQHIKPGAFLVNTG--SSQLLDD 261 (632)
Q Consensus 211 ----------------------sL~eLL~~ADVV~l~--lPlT~~T~~lI~~~~L~~MK~GAvLINvg--RG~iVDe 261 (632)
.+.+++..+|+||.| +|.. .+..+|+++.++.||+|++|||+| ||+.+++
T Consensus 226 ~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401)
T 1x13_A 226 EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401)
T ss_dssp ----CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred cccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence 377889999999999 5542 356889999999999999999999 8876654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=166.45 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=104.1
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHH
Q 006758 102 DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRS 181 (632)
Q Consensus 102 erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~L 181 (632)
...++++|+... +..+-+-..+.....+...... .. ...+.|++|||||+|.||+.+|+++
T Consensus 206 ~L~~PvinVnds----~tK~~fDn~yG~~eslvdgI~R---at------------g~~L~GKTVgVIG~G~IGr~vA~~l 266 (464)
T 3n58_A 206 LLPFPAINVNDS----VTKSKFDNKYGCKESLVDGIRR---GT------------DVMMAGKVAVVCGYGDVGKGSAQSL 266 (464)
T ss_dssp CCCSCEEECTTS----HHHHTTHHHHHHHHHHHHHHHH---HH------------CCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred CCCCCEEeeccH----hhhhhhhhhhcchHHHHHHHHH---hc------------CCcccCCEEEEECcCHHHHHHHHHH
Confidence 467899998654 3444443333333322221111 00 1358999999999999999999999
Q ss_pred hhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh-hc
Q 006758 182 LSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL-LD 260 (632)
Q Consensus 182 kafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i-VD 260 (632)
++|||+|+++|+++.........+. .+.+++++++.||||+++. .|+++|+++.|+.||+|++|||+|||.+ ||
T Consensus 267 rafGa~Viv~d~dp~~a~~A~~~G~-~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GAILINvGRgdvEID 341 (464)
T 3n58_A 267 AGAGARVKVTEVDPICALQAAMDGF-EVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMCIVGNIGHFDNEIQ 341 (464)
T ss_dssp HHTTCEEEEECSSHHHHHHHHHTTC-EECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTEEEEECSSSTTTBT
T ss_pred HHCCCEEEEEeCCcchhhHHHhcCc-eeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCeEEEEcCCCCcccC
Confidence 9999999999987532211122233 3468999999999999864 4789999999999999999999999998 99
Q ss_pred HHHHHH
Q 006758 261 DCAVKQ 266 (632)
Q Consensus 261 e~AL~~ 266 (632)
.++|.+
T Consensus 342 ~~aL~~ 347 (464)
T 3n58_A 342 VAALRN 347 (464)
T ss_dssp CGGGTT
T ss_pred HHHHHh
Confidence 998873
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=158.57 Aligned_cols=195 Identities=10% Similarity=0.062 Sum_probs=129.5
Q ss_pred cccccceEEEEecCCCC----CHHHHhcCC-CceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHH
Q 006758 55 GKIEAAAAVLLHSLAYL----PRAAQRRLR-PYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGL 129 (632)
Q Consensus 55 ~~i~dAdaIli~s~~~L----~~evL~~lp-~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal 129 (632)
+.+.++|+|+... .++ +++.++.++ .+++|.....+.|+.+++++.++||.+++... ..+.+++..+. +|..
T Consensus 63 ~~~~~adiil~v~-~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~-~~~~~~~~~l~-~l~~ 139 (384)
T 1l7d_A 63 QALSQADVVWKVQ-RPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMEL-MPRISRAQSMD-ILSS 139 (384)
T ss_dssp HHHSSCSEEEEEE-CCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGG-CCCSGGGGGGC-HHHH
T ss_pred hhhcCCCEEEEec-CcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEecc-ccccccccccc-hhhH
Confidence 3467889877663 355 678889886 48888888889999999999999999998421 11111111222 1112
Q ss_pred HhhcHHHHHHHHHh-----cCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc
Q 006758 130 LRRTHLLARHALSA-----SGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS 204 (632)
Q Consensus 130 ~Rrl~~~~~~~~~~-----g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~ 204 (632)
...+.. +.. ... +.|.. ....+...+.|++|+|+|+|.||..+++.++++|++|+++|++....+.....
T Consensus 140 ~a~~ag-~~a-v~~~~~~~~~~~~---~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~ 214 (384)
T 1l7d_A 140 QSNLAG-YRA-VIDGAYEFARAFP---MMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL 214 (384)
T ss_dssp HHHHHH-HHH-HHHHHHHCSSCSS---CEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT
T ss_pred HHHHHH-HHH-HHHHHHHhhhccc---chhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 211111 001 111 22221 11112246899999999999999999999999999999999986543211112
Q ss_pred Cceec--C---------------------------CHHHHhccCCEEEEcc--CCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 205 AARRM--D---------------------------TLNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 205 g~~~~--~---------------------------sL~eLL~~ADVV~l~l--PlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
+.... + .+.+++..+|+|+.|+ |.++ +.++|+.+.++.||+|++|||+
T Consensus 215 Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdv 293 (384)
T 1l7d_A 215 GGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDL 293 (384)
T ss_dssp TCEECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEET
T ss_pred CCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEE
Confidence 22211 0 1788899999999887 4332 4578899999999999999999
Q ss_pred C--CChh
Q 006758 254 G--SSQL 258 (632)
Q Consensus 254 g--RG~i 258 (632)
+ ||+.
T Consensus 294 a~~~gg~ 300 (384)
T 1l7d_A 294 AVEAGGN 300 (384)
T ss_dssp TGGGTCS
T ss_pred ecCCCCC
Confidence 9 6653
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-16 Score=168.36 Aligned_cols=224 Identities=14% Similarity=0.146 Sum_probs=161.1
Q ss_pred CceEEEEecccCCccchHHHH-----hcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCC
Q 006758 81 PYQLILCLGSSDRTVDSALAA-----DLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR 155 (632)
Q Consensus 81 ~LK~I~~~gaG~D~VD~~aa~-----erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~ 155 (632)
.+++|...++|+|++++..+. +.++.+++.+|. ..+++++.+..++.+.|++...... ..+.|.-.......
T Consensus 81 a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~--~~~~~s~a~~av~~ 157 (404)
T 1gpj_A 81 AVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI--SEGAVSIGSAAVEL 157 (404)
T ss_dssp HHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST--TCSCCSHHHHHHHH
T ss_pred HhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh--cCCCccHHHHHHHH
Confidence 467788899999999998877 778989998888 4689999999999999987544321 23334211000000
Q ss_pred -c--cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC-CcccccCce--ecCCHHHHhccCCEEEEccCC
Q 006758 156 -G--MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG-KVTFPSAAR--RMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 156 -~--~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~-~~~~~~g~~--~~~sL~eLL~~ADVV~l~lPl 228 (632)
. ..++.|++|+|||+|.||+.+++.|+++|+ +|+++|++.... ......++. .+.++.+++..+|+|+.|+|.
T Consensus 158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence 0 114789999999999999999999999999 999999986432 111111222 235788889999999999875
Q ss_pred ChhhHhhccHHHHhc--cC----CCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEE--c
Q 006758 229 TDETIQIINAECLQH--IK----PGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI--L 300 (632)
Q Consensus 229 T~~T~~lI~~~~L~~--MK----~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIi--T 300 (632)
+..+++.+.+.. || ++.++||++ . |.+.+++++++|||++ +
T Consensus 238 ---~~~~~~~~~l~~~~lk~r~~~~~v~vdia---------------------------~-P~~i~~~l~~l~~v~l~d~ 286 (404)
T 1gpj_A 238 ---PHPVIHVDDVREALRKRDRRSPILIIDIA---------------------------N-PRDVEEGVENIEDVEVRTI 286 (404)
T ss_dssp ---SSCCBCHHHHHHHHHHCSSCCCEEEEECC---------------------------S-SCSBCTTGGGSTTEEEEEH
T ss_pred ---CCceecHHHHHHHHHhccCCCCEEEEEcc---------------------------C-CCCCCccccccCCeEEEeH
Confidence 446777777776 42 556676665 3 5556778999999999 9
Q ss_pred CCCCCccHHHHH----------HHHHHHHHHHHHHHHcCCCCCccccCC
Q 006758 301 PRSADYSEEVWM----------EIRDKAISVLQTFFFDGVIPKNAISDT 339 (632)
Q Consensus 301 PHiAg~T~ea~~----------~~~~~a~~nL~~fL~~G~~p~nvVn~~ 339 (632)
||+++.+.++.. .+....++++..|+ .+..+..+|..-
T Consensus 287 d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~-~~~~~~~~I~~l 334 (404)
T 1gpj_A 287 DDLRVIARENLERRRKEIPKVEKLIEEELSTVEEEL-EKLKERRLVADV 334 (404)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccHHHHHHH
Confidence 999998887644 56677788888886 454455555443
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-14 Score=158.29 Aligned_cols=102 Identities=14% Similarity=0.197 Sum_probs=85.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+.|++|+|+|+|.||+.+|++|++||++|+++|+++.........+. .+.+++++++.||||++| +.|.++|++
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~-~v~~Leeal~~ADIVi~a----tgt~~lI~~ 291 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF-RLVKLNEVIRQVDIVITC----TGNKNVVTR 291 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEEC----SSCSCSBCH
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC-EeccHHHHHhcCCEEEEC----CCCcccCCH
Confidence 489999999999999999999999999999999987632211222232 346899999999999995 467899999
Q ss_pred HHHhccCCCcEEEEcCCChh-hcHHHHH
Q 006758 239 ECLQHIKPGAFLVNTGSSQL-LDDCAVK 265 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~i-VDe~AL~ 265 (632)
+.|+.||+|++|||+|||.+ +|..+|.
T Consensus 292 e~l~~MK~gailINvgrg~~EId~~~L~ 319 (435)
T 3gvp_A 292 EHLDRMKNSCIVCNMGHSNTEIDVASLR 319 (435)
T ss_dssp HHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred HHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence 99999999999999999998 7776663
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=132.54 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=99.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
++|||||+|.||..||++|...|++|++||++....+.....++....++.|++..||+|++|+|..+.++.++....+.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~ 85 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE 85 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence 57999999999999999999999999999999876665555677888999999999999999999988888888888999
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 243 ~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+++|.++|+++....-....+.+.+.+..+. .+|.
T Consensus 86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda 121 (297)
T 4gbj_A 86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA 121 (297)
T ss_dssp HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence 99999999999999999999999999988775 7775
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=135.38 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=101.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH--HH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--EC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~--~~ 240 (632)
++|||||+|.||..||++|...|++|.+||+++...+.....++....++.|+++.||+|++|+|..+.++.++.. ..
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~ 83 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 83 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence 4799999999999999999999999999999976554444567778899999999999999999999998888743 37
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|.++||++...+-+...+.+.+.+..+. .||.
T Consensus 84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa 121 (300)
T 3obb_A 84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA 121 (300)
T ss_dssp TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence 8899999999999999999999999999988775 7885
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.9e-12 Score=129.47 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=108.3
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCc--eecCCHHH-HhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA--RRMDTLND-LLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~--~~~~sL~e-LL~~ADVV~l~lPlT~~T~ 233 (632)
.+..++|||||+|.||..+|+.|+..|+ +|++||++....+.....+. ....++++ ++.+||+|++|+|... +.
T Consensus 30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~-~~ 108 (314)
T 3ggo_A 30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRT-FR 108 (314)
T ss_dssp CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGG-HH
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHH-HH
Confidence 3456899999999999999999999999 99999998643332222333 23467888 8999999999999754 45
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCCCccHHHH
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYSEEVW 311 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiAg~T~ea~ 311 (632)
.++ .+....++++++|++++..+....+++.+.+....+.+..+-+.+. |......|+....+++||+-+ .+.+..
T Consensus 109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~-~~~~~~ 186 (314)
T 3ggo_A 109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK-TDKKRL 186 (314)
T ss_dssp HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTT-SCHHHH
T ss_pred HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCC-CCHHHH
Confidence 555 5667779999999999988765566677766554444455544443 334455778888999999843 344433
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.6e-12 Score=130.84 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=99.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+..++|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.++++.||+|++++|....++.++..+
T Consensus 7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 86 (306)
T 3l6d_A 7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGMP 86 (306)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTST
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhccc
Confidence 56788999999999999999999999999999998754332223355667899999999999999999877788888643
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+..+++|.++||++++.+....++.+.+.+..+. .+|.
T Consensus 87 ~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda 125 (306)
T 3l6d_A 87 GVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG 125 (306)
T ss_dssp THHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred chhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence 56778899999999999999999999999876554 5664
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=124.48 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=102.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCce--ecCCHHHHhc-cCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAAR--RMDTLNDLLA-ASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~~--~~~sL~eLL~-~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|||||+|.||..+|..|+..|+ +|++||++....+.....+.. ...++++++. .||+|++|+|.. .+..++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~ 80 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK 80 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence 479999999999999999999998 999999986432211112322 2457888999 999999999964 5556664
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC--CCCCCCccccCCCcEEEcCCCCCc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE--GPQWMEAWVREMPNVLILPRSADY 306 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE--~P~~~~~pL~~~pNVIiTPHiAg~ 306 (632)
+....|+++++|++++++.....+++.+.+..+.+.+..+-+.+ .|......++...+++++||.++.
T Consensus 81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~ 150 (281)
T 2g5c_A 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD 150 (281)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCC
Confidence 46677899999999999887667778888876433322222212 133344567778889999997654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-11 Score=127.37 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=99.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
+...++|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.++++.||+|++|+|....++.++..
T Consensus 28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~ 107 (320)
T 4dll_A 28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA 107 (320)
T ss_dssp -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence 34667999999999999999999999999999999875433222335666789999999999999999987777777753
Q ss_pred -HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 239 -ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 239 -~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
..+..+++|.++||++++.+.....+.+.+.+..+. .+|.
T Consensus 108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~~ 148 (320)
T 4dll_A 108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA--HLDT 148 (320)
T ss_dssp TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence 577789999999999999999999999999887654 4553
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=124.64 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=97.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
.++|||||+|.||..+|+.|...|++|.+||++....+.....+.....++++++. ||+|++|+|....++.++ .+.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~ 92 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA 92 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence 36899999999999999999999999999999876554333345666789999999 999999999877888887 6778
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
..+++|.++||+++..+.....+.+.+.+..+. .+|.
T Consensus 93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~~ 129 (296)
T 3qha_A 93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH--IVDA 129 (296)
T ss_dssp TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE--EEEC
T ss_pred HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE--EEeC
Confidence 889999999999999999999999999876554 4553
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-11 Score=124.19 Aligned_cols=118 Identities=8% Similarity=0.112 Sum_probs=97.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc--c
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII--N 237 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI--~ 237 (632)
..-++|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.++++.||+|++|+|....++.++ .
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~ 98 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK 98 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence 45578999999999999999999999999999998755433233456667899999999999999999877777776 2
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEee
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLD 279 (632)
...+..+++|+++||+++..+.....+.+.+.+..+. .+|
T Consensus 99 ~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~v~ 138 (310)
T 3doj_A 99 GGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR--FVE 138 (310)
T ss_dssp TCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred hhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence 4567889999999999999998888999988876554 455
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=123.17 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=96.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~ 240 (632)
++|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.+++..||+|++|+|....++.++. .+.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999987554432334566678999999999999999998777877772 467
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEee
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLD 279 (632)
+..+++|.++||+++..+.....+.+.+.+..+. .+|
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~--~~~ 118 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR--FLE 118 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE--EEE
Confidence 7889999999999999999999999998876554 455
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.6e-11 Score=126.95 Aligned_cols=120 Identities=9% Similarity=0.135 Sum_probs=98.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccC---CEEEEccCCChhhHhhc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAAS---DVISLHCAVTDETIQII 236 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~A---DVV~l~lPlT~~T~~lI 236 (632)
+.+++|||||+|.||..+|+.|...|++|.+||++....+.....++....++.+++..+ |+|++++|.. .+..++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence 467899999999999999999999999999999986543322233555667999999999 9999999987 777777
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
...+..+++|.+|||++++...+...+.+.+.+..+......|+
T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVs 142 (358)
T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTS 142 (358)
T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCC
Confidence 56788899999999999999999999999999887763333333
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=122.83 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=95.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~ 240 (632)
++|||||+|.||..+|+.|...|++|.+||++....+.....+.....++.++++.||+|++|+|....++.++. ...
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 479999999999999999999999999999987554422233556678999999999999999998777777762 456
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|.++||++++.+.....+.+.+.+..+. .+|.
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~--~~~~ 119 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR--FLEA 119 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEEC
Confidence 7889999999999999999889999988876544 4553
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-11 Score=123.03 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=94.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-cCCHHHHhccCCEEEEccCCChhhHhhcc--H
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIIN--A 238 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~ 238 (632)
.++|||||+|.||..+|+.|...|++|.+||++....+.....+... ..++.++++.||+|++++|....++.++. .
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence 46899999999999999999999999999999864433222234444 67899999999999999998777777763 4
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEee
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD 279 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLD 279 (632)
+.+..+++|+++||+++........+.+.+.+..+. .+|
T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~--~~~ 125 (303)
T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN--MLD 125 (303)
T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe--EEe
Confidence 567789999999999999998888999988876543 455
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=116.19 Aligned_cols=140 Identities=12% Similarity=0.062 Sum_probs=101.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-------------------------cCceecCCHHHHhc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-------------------------SAARRMDTLNDLLA 217 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-------------------------~g~~~~~sL~eLL~ 217 (632)
++|+|||.|.||..+|..+...|++|++||++....+.... .......++.++++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence 68999999999999999999999999999998643221110 01234578899999
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcE
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNV 297 (632)
+||+|+.++|.+.+....+-.+....++++++|++.+++- ...+|.+++... ...+++..+. | .+.++.+
T Consensus 85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~-~~~ig~h~~~-p------~~~~~lv 154 (283)
T 4e12_A 85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRG-DKFLALHFAN-H------VWVNNTA 154 (283)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCG-GGEEEEEECS-S------TTTSCEE
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCC-cceEEEccCC-C------cccCceE
Confidence 9999999999988777777778888899999999655543 456777777532 2345555553 2 3467889
Q ss_pred EEcCCCCCccHHHHHH
Q 006758 298 LILPRSADYSEEVWME 313 (632)
Q Consensus 298 IiTPHiAg~T~ea~~~ 313 (632)
.++||- ..+.+..+.
T Consensus 155 evv~~~-~t~~~~~~~ 169 (283)
T 4e12_A 155 EVMGTT-KTDPEVYQQ 169 (283)
T ss_dssp EEEECT-TSCHHHHHH
T ss_pred EEEeCC-CCCHHHHHH
Confidence 999983 334444433
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=119.42 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=93.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC--CCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE--GKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~--~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
...++|||||+|.||..+|+.|...|+ +|.+||++. ...+.....+.....++.+++..||+|++|+|...... .+
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~ 100 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE-VA 100 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH-HH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH-HH
Confidence 345789999999999999999999999 999999973 22221222355666799999999999999999877654 33
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.+.+..+++|++|||+++.......++.+.+.+..+....+|.
T Consensus 101 -~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~ 143 (312)
T 3qsg_A 101 -QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV 143 (312)
T ss_dssp -HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred -HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 5677889999999999999999999999988876333345664
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.5e-11 Score=124.32 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=97.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc----CCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA----SDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~----ADVV~l~lPlT~~T~~lI~ 237 (632)
-++|||||+|.||..+|+.|+..|++|++||++....+.....++....++.++++. ||+|++|+|. ..+..++.
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~ 86 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD 86 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH
Confidence 357999999999999999999999999999998644332233455455788888775 6999999995 46777762
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHH-cCCcceEEeecCCC--CCCCCccccCCCcEEEcCCC
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI-DGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRS 303 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~-sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHi 303 (632)
.+..+++|++|+|++..+..-.+++.+.+. ...+.++.+-+.+. |......|+...++++||+-
T Consensus 87 --~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~ 153 (341)
T 3ktd_A 87 --AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQ 153 (341)
T ss_dssp --HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGG
T ss_pred --HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCC
Confidence 344569999999999876543444444332 11233344444432 33345568888889999974
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-10 Score=120.46 Aligned_cols=187 Identities=11% Similarity=0.096 Sum_probs=113.1
Q ss_pred cccceEEEEecCCCCCHHHHhcCCCceEEEEec-ccCCccchHHHHhcCcEEEEc---CCCC-h------HHHHHHHHHH
Q 006758 57 IEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLG-SSDRTVDSALAADLGLRLIHV---DTSR-A------EEIADTVMAL 125 (632)
Q Consensus 57 i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~g-aG~D~VD~~aa~erGI~VtNv---pg~n-a------~aVAE~ALal 125 (632)
+.++|+|+.-.. .+.+.+..++.=+++.+.- ..-+.--++++.++||...-- |... + .+++|.+=.+
T Consensus 88 ~~~adiIlkVk~--p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~ 165 (405)
T 4dio_A 88 AKTADVILKVRR--PSAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQ 165 (405)
T ss_dssp GGGCSEEEEEEC--CCTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHH
T ss_pred hccCCEEEEeCC--CChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHH
Confidence 556787765432 2344566665545544432 222222246677889988763 3211 1 2333333111
Q ss_pred HHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC
Q 006758 126 LLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA 205 (632)
Q Consensus 126 iLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g 205 (632)
. ...... .+.+...-+..+...+.+.+|+|||+|.||..+|+.++++|++|++||++....+.....+
T Consensus 166 A--------v~~aa~----~l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G 233 (405)
T 4dio_A 166 A--------VIDAAY----EYDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLG 233 (405)
T ss_dssp H--------HHHHHH----HCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTT
T ss_pred H--------HHHHHH----HhHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcC
Confidence 1 111110 1111111111222357899999999999999999999999999999999875322111111
Q ss_pred cee-----------------------------cCCHHHHhccCCEEEEcc--CCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 206 ARR-----------------------------MDTLNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 206 ~~~-----------------------------~~sL~eLL~~ADVV~l~l--PlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
... ..+|.++++.|||||.++ |.. .+..+|+++.++.||||++|||++
T Consensus 234 ~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 234 AKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp CEECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEe
Confidence 110 136889999999999885 533 356789999999999999999998
Q ss_pred --CChh
Q 006758 255 --SSQL 258 (632)
Q Consensus 255 --RG~i 258 (632)
+|+.
T Consensus 313 ~d~GG~ 318 (405)
T 4dio_A 313 VERGGN 318 (405)
T ss_dssp GGGTCS
T ss_pred CCCCCC
Confidence 4443
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-10 Score=123.35 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=87.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc-cCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|.|+||+|+|+|+||+.+|++|++|||+|+++|++....+.....++.. .++++++. .|||++.| .|.++|+
T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~-v~~~ell~~~~DIliP~-----A~~~~I~ 245 (355)
T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTA-VALEDVLSTPCDVFAPC-----AMGGVIT 245 (355)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEE-eChHHhhcCccceecHh-----HHHhhcC
Confidence 48999999999999999999999999999999998743211011123333 47788888 89999753 5789999
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.+.+..|| ..+|||.+++.+++++| .++|.++.|.
T Consensus 246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl 280 (355)
T 1c1d_A 246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL 280 (355)
T ss_dssp HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence 99999998 78999999999999777 5888888765
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.8e-10 Score=115.39 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=99.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCcccccCc--eecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|||||+|.||..+|..|... |.+|++||++....+.....+. ....++++++..+|+|++++|... ...++.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~- 84 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIK- 84 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHH-
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHH-
Confidence 6899999999999999999865 7899999997543221111232 234678888999999999999643 355653
Q ss_pred HHHhc-cCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEee---cC--C--CCCCCCccccCCCcEEEcCCCCCc
Q 006758 239 ECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD---GA--E--GPQWMEAWVREMPNVLILPRSADY 306 (632)
Q Consensus 239 ~~L~~-MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLD---Vf--E--~P~~~~~pL~~~pNVIiTPHiAg~ 306 (632)
+.... +++++++|+++++.....+.+.+.+....+. .++ ++ + .|......++..++++++||.++.
T Consensus 85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~ 158 (290)
T 3b1f_A 85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK 158 (290)
T ss_dssp HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence 45566 8999999999998877677788877652222 233 11 1 233344567777889999987654
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.5e-10 Score=110.72 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=93.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--eecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
++|+|||+|.||..+|+.|...|++|.+||++..........+. ....+++++ ..+|+|++++|. ..+..++. +.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~~-~l 77 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTLE-KL 77 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHHH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHHH-HH
Confidence 37999999999999999999999999999987643221111222 234578888 999999999994 45566663 55
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEee--cCCCCCCCCccccCCCcEEEcCCCCC
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLD--VfE~P~~~~~pL~~~pNVIiTPHiAg 305 (632)
...+++++++|+++..+....+.+.+.+. ..+.+..+- +...|....+.++..+.++++|+.+.
T Consensus 78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~-~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~ 143 (279)
T 2f1k_A 78 IPHLSPTAIVTDVASVKTAIAEPASQLWS-GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT 143 (279)
T ss_dssp GGGSCTTCEEEECCSCCHHHHHHHHHHST-TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred HhhCCCCCEEEECCCCcHHHHHHHHHHhC-CEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCC
Confidence 67789999999998877666666665543 222221221 11123333334566667889997543
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.4e-10 Score=115.66 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=90.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCC-------CcccccCceecC-CHHHHhccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKG-------KVTFPSAARRMD-TLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~-------~~~~~~g~~~~~-sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.++|||||+|.||..+|+.|...| ++|++||++.... +.....+. .. ++.+++++||+|++|+|.....
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~ 101 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK 101 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence 368999999999999999999999 9999999986211 11111233 56 8899999999999999987766
Q ss_pred HhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
..+ .+.+..+++|+++||+++.......++.+.+.+..+. .+|.
T Consensus 102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~--~~d~ 145 (317)
T 4ezb_A 102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS--FVEG 145 (317)
T ss_dssp HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCE--EEEE
T ss_pred HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence 544 6778889999999999999999999999999876543 4553
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.00 E-value=9.1e-10 Score=113.21 Aligned_cols=120 Identities=14% Similarity=0.049 Sum_probs=87.2
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.++||||| +|.||..+|..|+..|++|.+||++.. .++.+++..||+|++|+|... +..++. +.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-------------~~~~~~~~~aDvVilavp~~~-~~~vl~-~l 85 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPINL-TLETIE-RL 85 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGGG-HHHHHH-HH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-------------cCHHHHhcCCCEEEEeCCHHH-HHHHHH-HH
Confidence 46899999 999999999999999999999998652 257788999999999999754 677764 45
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC-CCCccccCCCcEEEcCCC
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ-WMEAWVREMPNVLILPRS 303 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~-~~~~pL~~~pNVIiTPHi 303 (632)
...++++++|+++++.+....+++.+.+. .. .+..+ |. .++.+++...+++++||-
T Consensus 86 ~~~l~~~~iv~~~~svk~~~~~~~~~~~~---~~--~v~~h--P~~g~~~~~~~g~~~~l~~~~ 142 (298)
T 2pv7_A 86 KPYLTENMLLADLTSVKREPLAKMLEVHT---GA--VLGLH--PMFGADIASMAKQVVVRCDGR 142 (298)
T ss_dssp GGGCCTTSEEEECCSCCHHHHHHHHHHCS---SE--EEEEE--ECSCTTCSCCTTCEEEEEEEE
T ss_pred HhhcCCCcEEEECCCCCcHHHHHHHHhcC---CC--EEeeC--CCCCCCchhhcCCeEEEecCC
Confidence 66799999999999877654555554431 11 22211 21 111235555678999974
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=113.06 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=87.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH--HH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--EC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~--~~ 240 (632)
++|||||+|.||..+|+.|...|++|.+|| +....+.....+.....++++++..+|+|++|+|....+..++.. ..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence 479999999999999999999999999999 654433222224445678999999999999999987777777642 45
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
...+++|++||+++.|...+.+.|.+.+.+.
T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295)
T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295)
T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 5678999999999999888888899988864
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-10 Score=113.27 Aligned_cols=111 Identities=15% Similarity=0.185 Sum_probs=89.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~ 240 (632)
++|+|||+|.||..+|..|...|++|.+||++....+.....+.....++++++..+|+|++++|....+..++. .+.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 479999999999999999999999999999986433211122455567899999999999999998777777773 345
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
...+++|++|||++.|...+.+.|.+.+....+
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~ 118 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV 118 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677899999999999988778889988876533
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-09 Score=121.11 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=93.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-----CceecCCHHHHhc---cCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----AARRMDTLNDLLA---ASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-----g~~~~~sL~eLL~---~ADVV~l~lPlT~~T~ 233 (632)
.++|||||+|.||..||.+|...|++|.+||++....+..... ......++++++. .+|+|++++|..+.+.
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 83 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD 83 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence 3579999999999999999999999999999987543311111 1223578999887 5999999999988888
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.++ .+.+..|++|.+|||++++...+...+.+.|.+..+.
T Consensus 84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~ 123 (484)
T 4gwg_A 84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGIL 123 (484)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccc
Confidence 888 5788899999999999999999999999999887765
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.7e-10 Score=112.86 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=89.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~ 240 (632)
++|||||+|.||..+|..|...|++|.+||++..........+.....++++++..+|+|++++|....+..++. .+.
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999876432211122455567899999999999999998777877774 356
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
...+++|++||+++.|...+.+.|.+.+...
T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301)
T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301)
T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 6778999999999999877788888888764
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.9e-10 Score=112.98 Aligned_cols=108 Identities=13% Similarity=0.205 Sum_probs=86.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH--HH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--EC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~--~~ 240 (632)
++|||||+|.||..+|..|...|++|.+||++....+.....+.....++.+++..+|+|++|+|....+..++.. ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 3699999999999999999999999999999864332222234555678999999999999999987777777643 25
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+..+++|+++|+++...+.+...+.+.+.+
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK 110 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999888887777777777765
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-10 Score=122.60 Aligned_cols=136 Identities=15% Similarity=0.015 Sum_probs=92.8
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-CCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-GKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~-~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
..+.+++|||||+|.||..+|+.|+.+|++|++++++... .......+.... ++.++++.||+|++++|... ...++
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~ 89 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLY 89 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHH
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHH
Confidence 4588999999999999999999999999999999987643 111112233333 88899999999999999744 35666
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC-CCCCCCc---cccC---CCcEEEcCCCC
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE-GPQWMEA---WVRE---MPNVLILPRSA 304 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE-~P~~~~~---pL~~---~pNVIiTPHiA 304 (632)
..+....|++|++||+++ | +.. ....+. ....+||+. +|..+.+ .++. -.++++|||..
T Consensus 90 ~~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~ 155 (338)
T 1np3_A 90 KEEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD 155 (338)
T ss_dssp HHHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred HHHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence 546667899999999874 3 222 111111 123345553 2433333 3444 56788999853
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.94 E-value=7e-10 Score=119.02 Aligned_cols=180 Identities=11% Similarity=0.098 Sum_probs=111.1
Q ss_pred ceEEEEecCCCCCHHHHhcCCCceEEEEec-ccCCccchHHHHhcCcEEEEc---CCCC-h------HHHHHHHHHHHHH
Q 006758 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLG-SSDRTVDSALAADLGLRLIHV---DTSR-A------EEIADTVMALLLG 128 (632)
Q Consensus 60 AdaIli~s~~~L~~evL~~lp~LK~I~~~g-aG~D~VD~~aa~erGI~VtNv---pg~n-a------~aVAE~ALaliLa 128 (632)
+|+|+.-. ..+.+.++.++.=+++.+.- ...+.=-++++.++||...-- |... + .+++|.+=.+..
T Consensus 85 adiIlkVk--~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av- 161 (381)
T 3p2y_A 85 ADVVVKVN--PPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAV- 161 (381)
T ss_dssp SSEEECSS--CCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHH-
T ss_pred CCEEEEeC--CCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHH-
Confidence 56655332 33566677776655555543 222322246677889988763 3211 1 233333321111
Q ss_pred HHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee
Q 006758 129 LLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR 208 (632)
Q Consensus 129 l~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~ 208 (632)
..... .-++..+ -+..+...+.+.+|+|||+|.||..+|+.++++|++|++||++....+.....+...
T Consensus 162 -------~~aa~-~l~~~~~---~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~ 230 (381)
T 3p2y_A 162 -------LLGAS-LSTRFVP---MLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQW 230 (381)
T ss_dssp -------HHHHH-HCSSCSS---CEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEE
T ss_pred -------HHHHH-Hhhhhhh---hhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeE
Confidence 00100 0111111 111223457899999999999999999999999999999999875332111112211
Q ss_pred -------------------------cCCHHHHhccCCEEEEcc--CCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 209 -------------------------MDTLNDLLAASDVISLHC--AVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 209 -------------------------~~sL~eLL~~ADVV~l~l--PlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..++.++++.+|+||.++ |.. .+..+|+++.++.||||++|||++
T Consensus 231 ~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 231 LDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp CCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETT
T ss_pred EeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEe
Confidence 236789999999999886 542 356789999999999999999997
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=120.02 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc----CceecCCHHHHhcc---CCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS----AARRMDTLNDLLAA---SDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~----g~~~~~sL~eLL~~---ADVV~l~lPlT~~T 232 (632)
...++|||||+|.||..+|..|...|++|.+|||+....+..... ++....++++++.. +|+|++++|....+
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 92 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT 92 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence 467789999999999999999999999999999986433211111 45556789999887 99999999998888
Q ss_pred HhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
..++ .+....+++|.+|||++.|...+...+.+.|.+..+.
T Consensus 93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~ 133 (480)
T 2zyd_A 93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133 (480)
T ss_dssp HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence 8888 4677889999999999999988888898888875443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=119.63 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=77.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+.|++++|+|+|.||+.+|++|+++|++|+++|+++.........+ ..+.++++++..+|+|+.+. .+.++|+.
T Consensus 262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g-~dv~~lee~~~~aDvVi~at----G~~~vl~~ 336 (488)
T 3ond_A 262 MIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEG-LQVLTLEDVVSEADIFVTTT----GNKDIIML 336 (488)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-CEECCGGGTTTTCSEEEECS----SCSCSBCH
T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhC-CccCCHHHHHHhcCEEEeCC----CChhhhhH
Confidence 47999999999999999999999999999999998763322112222 24568899999999999764 35678999
Q ss_pred HHHhccCCCcEEEEcCCCh
Q 006758 239 ECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~ 257 (632)
+.|..||++++|+|+|++.
T Consensus 337 e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 337 DHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp HHHTTSCTTEEEEESSSTT
T ss_pred HHHHhcCCCeEEEEcCCCC
Confidence 9999999999999999983
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=110.75 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=88.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH--HH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA--EC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~--~~ 240 (632)
++|||||+|.||..+|..|...|++|.+||++....+.....+.....++.+++..+|+|++++|....+..++.. ..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence 6799999999999999999999999999999865433222234445568899999999999999977777776643 24
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
+..+++|.++|+++.+.......|.+.+....+
T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~ 143 (316)
T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG 143 (316)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 577899999999999887778888888865433
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=109.64 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=84.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
++|||||+|.||..+|..|.. |++|.+||++..........+..... +.+++..+|+|++|+|....+..++ .+...
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~ 78 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP 78 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence 369999999999999999999 99999999986433211111333334 7788899999999999876677766 45667
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 243 ~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
.+++|+++|+++.+...+.+.|.+.+.+.
T Consensus 79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 107 (289)
T 2cvz_A 79 YLREGTYWVDATSGEPEASRRLAERLREK 107 (289)
T ss_dssp TCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 78999999999999888888899988874
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.4e-09 Score=117.21 Aligned_cols=112 Identities=12% Similarity=0.208 Sum_probs=92.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cCceecCCHHHHhcc---CCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDLLAA---SDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eLL~~---ADVV~l~lPlT~~T~ 233 (632)
..+|||||+|.||..||..|...|++|.+||++....+.... .++....++.+++.. +|+|++++|....+.
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence 457999999999999999999999999999998754332111 245556789998877 999999999988888
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.++ .+....+++|.+||+++.+...+...+.+.|.+..+.
T Consensus 90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~ 129 (497)
T 2p4q_A 90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL 129 (497)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence 888 4677889999999999999988888898888875443
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-09 Score=108.66 Aligned_cols=128 Identities=18% Similarity=0.118 Sum_probs=88.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-------CceecCCHHHHhccCCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-------AARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-------g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
-+.++|||||+|.||..||..+. .|++|++||++....+..... ++....++++ +++||+|+.++|...+.
T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v 87 (293)
T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT 87 (293)
T ss_dssp --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence 36789999999999999999999 999999999986443321111 3444567776 89999999999999987
Q ss_pred HhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcCC
Q 006758 233 IQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILPR 302 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTPH 302 (632)
+..+-.+ +..+ +|++|+ |++.-.+ ..+.+++. ......++-.|. |. ..++-|.++|+
T Consensus 88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~-Pv------~~~~lveiv~g 145 (293)
T 1zej_A 88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN-PP------HVMPLVEIVIS 145 (293)
T ss_dssp HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS-ST------TTCCEEEEEEC
T ss_pred HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC-cc------ccCCEEEEECC
Confidence 7666544 6667 999995 8877544 34444432 222334444444 32 24566777775
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.8e-10 Score=110.40 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=74.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.+++|||||+|.||..+|+.|..+|++|.+|+|+.. .......+.... ++.+++..+|+|++++|.. .+..++
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~--- 90 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA--- 90 (201)
Confidence 5778999999999999999999999999999998865 221122233333 7888999999999999974 577776
Q ss_pred HHhccCCCcEEEEcCCChhh
Q 006758 240 CLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iV 259 (632)
.+..++++++|||+++|-..
T Consensus 91 ~l~~~~~~~ivI~~~~G~~~ 110 (201)
T 2yjz_A 91 ELADSLKGRVLIDVSNNQKM 110 (201)
Confidence 24557789999999999754
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.5e-09 Score=115.23 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=89.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc----cCceecCCHHHHhcc---CCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP----SAARRMDTLNDLLAA---SDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~----~g~~~~~sL~eLL~~---ADVV~l~lPlT~~T~~l 235 (632)
++|||||+|.||+.+|..|...|++|.+||++....+.... .++....++++++.. +|+|++++|....+..+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 57999999999999999999999999999998643321111 144556789998876 99999999998888888
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+ .+....+++|.+||+++.|...+...+.+.+.+..+.
T Consensus 86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~ 123 (474)
T 2iz1_A 86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN 123 (474)
T ss_dssp H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence 7 4566789999999999999888888888888765443
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-09 Score=109.32 Aligned_cols=160 Identities=14% Similarity=-0.009 Sum_probs=109.0
Q ss_pred CCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCC
Q 006758 69 AYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLG 148 (632)
Q Consensus 69 ~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~ 148 (632)
.+++.+++..++.+.-++....|++.++. +.| +..|+|+.. .+++.++.+. .
T Consensus 61 ~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~-----~g~~~~l~~~------------~--- 112 (263)
T 2d5c_A 61 LPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA-----PGFLEALKAG------------G--- 112 (263)
T ss_dssp TTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETT----EEEEECCHH-----HHHHHHHHHT------------T---
T ss_pred ccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH-----HHHHHHHHHh------------C---
Confidence 37788888888877777777778888764 334 233555543 2333333210 0
Q ss_pred CCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccC
Q 006758 149 SVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 149 ~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.++.| +++|||+|.||+.+|+.|..+|++|.++||+........ ..+.. ..+++++ .++|+|++|+|
T Consensus 113 ---------~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp 180 (263)
T 2d5c_A 113 ---------IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATR 180 (263)
T ss_dssp ---------CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSS
T ss_pred ---------CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccC
Confidence 13688 999999999999999999999999999999863322100 01222 4578888 99999999999
Q ss_pred CCh--hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 228 VTD--ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 228 lT~--~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
... .+...+. +..+++|+++|+++.+.. +. .|.+++++..+
T Consensus 181 ~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~ 223 (263)
T 2d5c_A 181 VGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGL 223 (263)
T ss_dssp TTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred CCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcC
Confidence 863 3334453 467899999999998743 33 47777665433
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-09 Score=108.16 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=68.8
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC--------------CCccc-ccCceecCCHHHHhccCCEE
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK--------------GKVTF-PSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~--------------~~~~~-~~g~~~~~sL~eLL~~ADVV 222 (632)
.++.+++|||||+|.||..+|+.|...|++|++||++... ..... ..+.....++.++++.||+|
T Consensus 15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvV 94 (245)
T 3dtt_A 15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELV 94 (245)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEE
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEE
Confidence 5689999999999999999999999999999999998643 11001 11334456889999999999
Q ss_pred EEccCCChhhHhhccHHH-HhccCCCcEEEEcCC
Q 006758 223 SLHCAVTDETIQIINAEC-LQHIKPGAFLVNTGS 255 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~-L~~MK~GAvLINvgR 255 (632)
++++|...... .+. +. ...+ +|.++|+++-
T Consensus 95 ilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s~ 125 (245)
T 3dtt_A 95 VNATEGASSIA-ALT-AAGAENL-AGKILVDIAN 125 (245)
T ss_dssp EECSCGGGHHH-HHH-HHCHHHH-TTSEEEECCC
T ss_pred EEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECCC
Confidence 99999765443 332 22 2334 7999999993
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7.8e-09 Score=113.59 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=89.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cCceecCCHHHHhc---cCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAARRMDTLNDLLA---ASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g~~~~~sL~eLL~---~ADVV~l~lPlT~~T~~ 234 (632)
++|||||+|.||..+|..|...|++|.+||++....+.... .+.....++++++. .+|+|++++|....+..
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 46999999999999999999999999999998643321111 23445678999874 89999999998878888
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++. +....+++|.+||+++.|...+...+.+.+.+..+.
T Consensus 83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~ 121 (482)
T 2pgd_A 83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL 121 (482)
T ss_dssp HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 874 566789999999999999888888888888775443
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-08 Score=112.71 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=88.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-C-------ceecCCHHHHhcc---CCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-A-------ARRMDTLNDLLAA---SDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-g-------~~~~~sL~eLL~~---ADVV~l~lPlT~~ 231 (632)
++|||||+|.||..+|..|...|++|.+||++....+..... + .....++++++.. +|+|++++|....
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence 369999999999999999999999999999975432211111 2 4456789898874 9999999999877
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+..++ .+....+++|.+||+++.|...+...+.+.+.+..+.
T Consensus 82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~ 123 (478)
T 1pgj_A 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123 (478)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence 88887 4566789999999999999888888898888875544
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.75 E-value=6e-09 Score=104.02 Aligned_cols=102 Identities=14% Similarity=0.052 Sum_probs=78.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC--CCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPE--GKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~--~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
++|||||+|.||..+|..|...|++|++||+.. ...+.....+.. .++.+++..||+|++|+|.......+ .+.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~ 76 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA 76 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence 379999999999999999999999999998732 111111112333 67889999999999999987666554 456
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+..+++ ++|+++.+.....+.|.+.+..
T Consensus 77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~ 104 (264)
T 1i36_A 77 GRHVRG--IYVDINNISPETVRMASSLIEK 104 (264)
T ss_dssp HTTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred HHhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence 667776 9999998887777788888765
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-08 Score=109.51 Aligned_cols=137 Identities=12% Similarity=0.142 Sum_probs=92.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCcc---------------cc----cCceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKVT---------------FP----SAARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~~~---------------~~----~g~~~~~sL~eLL~~ADV 221 (632)
++|+|||+|.||..+|..|... |++|++||++....+.. .. .+.....++.+.++.||+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence 5899999999999999999987 89999999975322110 00 123344678889999999
Q ss_pred EEEccCCChhhHh-----------hc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCC-
Q 006758 222 ISLHCAVTDETIQ-----------II--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWM- 287 (632)
Q Consensus 222 V~l~lPlT~~T~~-----------lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~- 287 (632)
|++|+|......+ +. -......|++|+++||+++..+-..+.+.+.|.+....+....|...|...
T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~~ 165 (467)
T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLA 165 (467)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCCC
T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHhh
Confidence 9999986443322 11 133556789999999999988877778888888754322222333333322
Q ss_pred -Cc---cccCCCcEEE
Q 006758 288 -EA---WVREMPNVLI 299 (632)
Q Consensus 288 -~~---pL~~~pNVIi 299 (632)
.. .+...++|++
T Consensus 166 ~G~~~~d~~~~~rivv 181 (467)
T 2q3e_A 166 EGTAIKDLKNPDRVLI 181 (467)
T ss_dssp TTSHHHHHHSCSCEEE
T ss_pred cccchhhccCCCEEEE
Confidence 11 2455566664
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.68 E-value=7.5e-09 Score=113.99 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=74.9
Q ss_pred ccccC-cEEEEEeCChhhHHHHHHHhhC------CCEEEEECCCC-CCCCcccccCcee----cCCHHHHhccCCEEEEc
Q 006758 158 RRCRG-LVLGIVGRSASARALATRSLSF------KMSVLYFDVPE-GKGKVTFPSAARR----MDTLNDLLAASDVISLH 225 (632)
Q Consensus 158 ~~L~G-ktVGIIGlG~IG~~vA~~Lkaf------Gm~V~~~dr~~-~~~~~~~~~g~~~----~~sL~eLL~~ADVV~l~ 225 (632)
..|+| ++|||||+|.||.++|+.|+.. |++|++.++.. .........|+.. ..++.+++++||+|+++
T Consensus 49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa 128 (525)
T 3fr7_A 49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL 128 (525)
T ss_dssp HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC
T ss_pred HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC
Confidence 45899 9999999999999999999987 99988665543 2222222234332 25899999999999999
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
+|..... .++. +.+..||+|++ |-++-|-.
T Consensus 129 VP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf~ 158 (525)
T 3fr7_A 129 ISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGFL 158 (525)
T ss_dssp SCHHHHH-HHHH-HHHHHSCTTCE-EEESSSHH
T ss_pred CChHHHH-HHHH-HHHHhcCCCCe-EEEeCCCC
Confidence 9986664 4665 68899999999 56677743
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.8e-09 Score=103.47 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=77.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMS-VLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
+.+++|||||+|.||..+|..+...|++ |.+||++....+.... .+.....++++++.++|+|++++|.. ....++
T Consensus 8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~- 85 (266)
T 3d1l_A 8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL- 85 (266)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH-
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH-
Confidence 5667899999999999999999988998 8999987643221111 14445678889999999999999965 345555
Q ss_pred HHHHhccCCCcEEEEcCCChhhcH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
.+....+++|+++|+++.|...+.
T Consensus 86 ~~l~~~~~~~~ivv~~s~~~~~~~ 109 (266)
T 3d1l_A 86 QGIVEGKREEALMVHTAGSIPMNV 109 (266)
T ss_dssp HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred HHHHhhcCCCcEEEECCCCCchHH
Confidence 345567889999999999876543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.6e-08 Score=104.82 Aligned_cols=140 Identities=15% Similarity=0.023 Sum_probs=94.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC--------ccccc-------------CceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK--------VTFPS-------------AARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~--------~~~~~-------------g~~~~~sL~eLL~~ADV 221 (632)
++|||||.|.||..||..+...|++|++||++..... ..... ......+++ .+++||+
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl 133 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL 133 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence 6899999999999999999999999999999864110 00011 122345675 6899999
Q ss_pred EEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcC
Q 006758 222 ISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILP 301 (632)
Q Consensus 222 V~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTP 301 (632)
||.++|-..+.+.-+-++....++++++|+..+++ +....|.+++.. .-..+++..|.+ .+ .++-|.+.|
T Consensus 134 VIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~HffnP-v~------~m~LvEIv~ 203 (460)
T 3k6j_A 134 IVESVIEDMKLKKELFANLENICKSTCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFNP-AN------VIRLVEIIY 203 (460)
T ss_dssp EEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCSS-TT------TCCEEEEEC
T ss_pred EEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC--hhHHHHHHhccC-CcceEEEEecch-hh------hCCEEEEEe
Confidence 99999988877655556777889999999754444 334556555432 234566666663 22 345567777
Q ss_pred CCCCccHHHHHHH
Q 006758 302 RSADYSEEVWMEI 314 (632)
Q Consensus 302 HiAg~T~ea~~~~ 314 (632)
+-. .++++.+.+
T Consensus 204 g~~-Ts~e~~~~~ 215 (460)
T 3k6j_A 204 GSH-TSSQAIATA 215 (460)
T ss_dssp CSS-CCHHHHHHH
T ss_pred CCC-CCHHHHHHH
Confidence 632 344444433
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-08 Score=95.93 Aligned_cols=80 Identities=11% Similarity=0.212 Sum_probs=64.0
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.++.+++|+|||+|.||..+|..|...|.+|.+||++.. .+++||+|++++| +..+..++.
T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~~ 75 (209)
T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALAK 75 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHHH
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHHH
Confidence 457899999999999999999999999999999998753 4578999999999 667777764
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
+....++ ++++|++++|--
T Consensus 76 -~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 76 -QYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp -HTHHHHT-TSEEEECCCCBC
T ss_pred -HHHHhcC-CCEEEEECCCCC
Confidence 3445677 999999999754
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-08 Score=107.72 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=81.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cCceecCCHHHHhc-cCCEEEEccCCChhhHhhc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLA-ASDVISLHCAVTDETIQII 236 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~lI 236 (632)
+|.|++|+|+|+|+||..+|++|..+|++|+++|++......... .++. ..+.++++. .|||++.|. +.++|
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~-~v~~~~ll~~~~DIvip~a-----~~~~I 243 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAVL 243 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE-EEChHHHhccCCcEeeccc-----hHHHh
Confidence 489999999999999999999999999999999987532221011 1233 336677776 899998874 56789
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
+.+.++.|+ ..+|+|.+++.+.+++ +.+.|.++.+
T Consensus 244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi 278 (364)
T 1leh_A 244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI 278 (364)
T ss_dssp STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence 988888884 6799999999988755 4566666555
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-08 Score=97.13 Aligned_cols=95 Identities=22% Similarity=0.264 Sum_probs=70.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.+++|+|||+|.||+.+|+.|...|++|.++|++....+.....+.... ++.+++.++|+|++++|. .....++.
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~--- 101 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS--- 101 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence 3578999999999999999999999999999987543221111233333 788999999999999995 44556653
Q ss_pred HhccCCCcEEEEcCCChhhc
Q 006758 241 LQHIKPGAFLVNTGSSQLLD 260 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVD 260 (632)
+..+.+++++|++++|..++
T Consensus 102 l~~~~~~~~vv~~s~g~~~~ 121 (215)
T 2vns_A 102 LSDQLAGKILVDVSNPTEQE 121 (215)
T ss_dssp GHHHHTTCEEEECCCCCHHH
T ss_pred HHHhcCCCEEEEeCCCcccc
Confidence 43334899999999997654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=95.05 Aligned_cols=130 Identities=9% Similarity=-0.002 Sum_probs=85.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccc------------------CceecCCHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPS------------------AARRMDTLN 213 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~------------------g~~~~~sL~ 213 (632)
++|+|||.|.||..+|..+...|++|++||++....+.. ... ......++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence 579999999999999999999999999999985322110 000 123346788
Q ss_pred HHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccC
Q 006758 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVRE 293 (632)
Q Consensus 214 eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~ 293 (632)
+.+.+||+|++++|...+...-+-.+....++++++|+....+- ....+.+.+... -..+++..+. |.. .
T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~-~~~~g~h~~~-P~~------~ 165 (302)
T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQ-DRFAGLHFFN-PVP------V 165 (302)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCG-GGEEEEEECS-STT------T
T ss_pred HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCc-ccEEEEecCC-Ccc------c
Confidence 89999999999999876554444455556788999998655543 334555544311 1223444443 222 3
Q ss_pred CCcEEEcCC
Q 006758 294 MPNVLILPR 302 (632)
Q Consensus 294 ~pNVIiTPH 302 (632)
.+.+.+.++
T Consensus 166 ~~~~~i~~g 174 (302)
T 1f0y_A 166 MKLVEVIKT 174 (302)
T ss_dssp CCEEEEECC
T ss_pred CceEEEeCC
Confidence 456666665
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-08 Score=98.01 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=104.9
Q ss_pred ceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHH
Q 006758 60 AAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARH 139 (632)
Q Consensus 60 AdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~ 139 (632)
.+.+.++ .++..+++..+..+.-++....+++.|+. +.| +..|+|++.. +++.++.+ .
T Consensus 66 ~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g----~~~g~nTd~~-----G~~~~l~~-------~ 123 (275)
T 2hk9_A 66 VKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENG----KAYGYNTDWI-----GFLKSLKS-------L 123 (275)
T ss_dssp CCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETT----EEEEECCHHH-----HHHHHHHH-------H
T ss_pred CCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCC----EEEeecCCHH-----HHHHHHHH-------h
Confidence 4455555 35667777777665555444455555543 234 1234555433 33333321 0
Q ss_pred HHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccCceecCCHHHHhcc
Q 006758 140 ALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAA 218 (632)
Q Consensus 140 ~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ 218 (632)
. .++.|++|+|||.|.+|+.+|..|...|++|.++||+....+... ..+.....++.+++.+
T Consensus 124 -----~------------~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~ 186 (275)
T 2hk9_A 124 -----I------------PEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDK 186 (275)
T ss_dssp -----C------------TTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGG
T ss_pred -----C------------CCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcC
Confidence 0 136889999999999999999999999999999999863222111 1133334478899999
Q ss_pred CCEEEEccCCChh--hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 219 SDVISLHCAVTDE--TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 219 ADVV~l~lPlT~~--T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+|+|++++|.... +...+. +..+++|+++|+++. . ...+++..+.
T Consensus 187 aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~ 233 (275)
T 2hk9_A 187 VQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKE 233 (275)
T ss_dssp CSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---S-CCHHHHHHHH
T ss_pred CCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHH
Confidence 9999999997642 223443 456899999999998 2 3345444444
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-08 Score=90.01 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=70.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.|++|+|||.|.||+.+++.|+.+|++|.+++++...... .+........++.+++..+|+|++++|.+ ..++.
T Consensus 20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~ 96 (144)
T 3oj0_A 20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVE 96 (144)
T ss_dssp CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBC
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEee
Confidence 4889999999999999999999999999999998643321 11111234578999999999999999975 34555
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
. ..+++|.++||++...
T Consensus 97 ~---~~l~~g~~vid~~~p~ 113 (144)
T 3oj0_A 97 E---RSLMPGKLFIDLGNPP 113 (144)
T ss_dssp G---GGCCTTCEEEECCSSC
T ss_pred H---HHcCCCCEEEEccCCc
Confidence 4 4578899999998754
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=101.52 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=79.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-------------------cC-ceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-------------------SA-ARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-------------------~g-~~~~~sL~eLL~~ADVV 222 (632)
++|+|||+|.||..+|..|...|.+|++||++....+.... .+ .....++.+++..||+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 37999999999999999999999999999987532210000 12 33456788889999999
Q ss_pred EEccCCChh---------hHhhccHHHHhccCC---CcEEEEcCCChhhc-HHHHHHHHHc
Q 006758 223 SLHCAVTDE---------TIQIINAECLQHIKP---GAFLVNTGSSQLLD-DCAVKQLLID 270 (632)
Q Consensus 223 ~l~lPlT~~---------T~~lI~~~~L~~MK~---GAvLINvgRG~iVD-e~AL~~AL~s 270 (632)
++|+|.... +...+ +.....|++ ++++|+.+...+-. .+.+.+.|.+
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~ 140 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED 140 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence 999997554 44443 445566888 99999998766554 5567777765
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.3e-08 Score=99.51 Aligned_cols=93 Identities=8% Similarity=0.128 Sum_probs=71.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
++|||||+ |.||..+|+.|...|++|.+||++....+.....+.. ..++.+++..||+|++++|... +..++ .+..
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~ 88 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALPDNI-IEKVA-EDIV 88 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCC-CCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCC-cCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence 58999999 9999999999999999999999975432211112222 2367788999999999999644 56666 4556
Q ss_pred hccCCCcEEEEcCCChh
Q 006758 242 QHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~i 258 (632)
..++++++||+++.|..
T Consensus 89 ~~l~~~~ivv~~s~~~~ 105 (286)
T 3c24_A 89 PRVRPGTIVLILDAAAP 105 (286)
T ss_dssp GGSCTTCEEEESCSHHH
T ss_pred HhCCCCCEEEECCCCch
Confidence 67899999999888763
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.9e-07 Score=96.43 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=112.3
Q ss_pred cceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEc---CCCC-----hHHHHHHHH--HHHHH
Q 006758 59 AAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHV---DTSR-----AEEIADTVM--ALLLG 128 (632)
Q Consensus 59 dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNv---pg~n-----a~aVAE~AL--aliLa 128 (632)
++|+|+.. ..+...+.....+.+.++.......+.-.++.+.+.|+..+|. |.-. -.++++.+- +.+++
T Consensus 66 ~ad~i~~v-ksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~g 144 (361)
T 1pjc_A 66 SREMVVKV-KEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFG 144 (361)
T ss_dssp TSSEEECS-SCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHH
T ss_pred cCCeEEEE-CCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHH
Confidence 67775533 3344333323334554554444444443456677889998874 4321 245555444 44444
Q ss_pred HHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-
Q 006758 129 LLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR- 207 (632)
Q Consensus 129 l~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~- 207 (632)
+.. +... ..+. +.. ..+...+.+++|+|+|.|.+|+.+++.++.+|++|+++|++....+.....+..
T Consensus 145 A~n-t~~~-----~~g~--G~~---l~~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~ 213 (361)
T 1pjc_A 145 ARF-LERQ-----QGGR--GVL---LGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR 213 (361)
T ss_dssp HHH-TSGG-----GTSC--CCC---TTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred HHH-Hhhc-----cCCC--cee---ccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCce
Confidence 432 1110 1111 000 011124778999999999999999999999999999999986432211111111
Q ss_pred ------ecCCHHHHhccCCEEEEccCCCh-hhHhhccHHHHhccCCCcEEEEcCC
Q 006758 208 ------RMDTLNDLLAASDVISLHCAVTD-ETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 208 ------~~~sL~eLL~~ADVV~l~lPlT~-~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
...++.+.+..+|+|+.+++... .+..++....+..|++|.++||++-
T Consensus 214 ~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 214 VELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp SEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred eEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence 11346677889999999997643 2345667888999999999999985
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=94.81 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=73.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
++|||||+|.||+.+|+.|...|..|.+||++....+.... .+.....++++++..+|+|++++| ...+.. .+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~-----v~ 77 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFET-----VL 77 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHH-----HH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHH-----HH
Confidence 47999999999999999999999999999998643221111 144445689999999999999999 444433 44
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
..+++|.++|++..|--. +.+.+.+..
T Consensus 78 ~~l~~~~~vv~~~~~~~~--~~l~~~~~~ 104 (259)
T 2ahr_A 78 KPLHFKQPIISMAAGISL--QRLATFVGQ 104 (259)
T ss_dssp TTSCCCSCEEECCTTCCH--HHHHHHHCT
T ss_pred HHhccCCEEEEeCCCCCH--HHHHHhcCC
Confidence 456789999999766443 346666553
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.7e-08 Score=95.36 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=76.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC----EEEEECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKM----SVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm----~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|||||+|.||..+|+.|...|+ +|.+||++....+... ..+.....++.+++..||+|++++|. .....++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence 579999999999999999999998 9999999864332111 12555667899999999999999974 3455555
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.+....+++++++|.+.-|-- .+.|.+.+..
T Consensus 81 ~~l~~~l~~~~~vvs~~~gi~--~~~l~~~~~~ 111 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGKS--IESTENAFNK 111 (247)
T ss_dssp ---CCSSCTTCEEEECSCCSC--HHHHHHHHCS
T ss_pred HHHHhhcCCCCEEEEecCCCC--HHHHHHHhCC
Confidence 345567889999997766543 4456565543
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-07 Score=98.05 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=78.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCC--CCCcccccCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEG--KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~--~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
...++|||||+|.||..+|..|...| .+|.+||++.. ..+.....+.....+..+++..||+|++++| ...+.
T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~ 98 (322)
T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP 98 (322)
T ss_dssp --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence 34568999999999999999999888 79999999864 2221112345555688899999999999999 45666
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.++. +....+++++++|+++-|-- ...|.+.|..
T Consensus 99 ~vl~-~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~ 132 (322)
T 2izz_A 99 FILD-EIGADIEDRHIVVSCAAGVT--ISSIEKKLSA 132 (322)
T ss_dssp HHHH-HHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred HHHH-HHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence 6663 45567889999999977643 3456666654
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9.4e-08 Score=95.12 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=72.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
++|||||+|.||..+|..|...| .+|.+||++....+.... .+.....++.+++ .+|+|++++| ...+..++..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~-- 76 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN-- 76 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--
Confidence 37999999999999999999889 999999998643321111 1444456777888 9999999999 5555555431
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+.. + ++++|+++.|--. +.|.+.+..
T Consensus 77 l~~-~-~~ivv~~~~g~~~--~~l~~~~~~ 102 (263)
T 1yqg_A 77 IRT-N-GALVLSVAAGLSV--GTLSRYLGG 102 (263)
T ss_dssp CCC-T-TCEEEECCTTCCH--HHHHHHTTS
T ss_pred hcc-C-CCEEEEecCCCCH--HHHHHHcCC
Confidence 222 4 9999999665433 566666654
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.2e-08 Score=99.63 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=79.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCcccc-cC--ceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKVTFP-SA--ARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~~~~-~g--~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
..++|||||+|.||+.+++.+.. +|+ +|.+||++....+.... .+ +....++++++..+|+|++++|. +..+
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v 210 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI 210 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence 56789999999999999999875 587 99999998643321111 12 44467899999999999999995 3456
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+.. ..+++|+++++++....- ...|.+.+.... ...+|.
T Consensus 211 ~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g--~~~vD~ 249 (312)
T 2i99_A 211 LFG---EWVKPGAHINAVGASRPD-WRELDDELMKEA--VLYVDS 249 (312)
T ss_dssp BCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHS--EEEESC
T ss_pred cCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcC--EEEECC
Confidence 654 578999999999876652 244443333322 246774
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.6e-07 Score=99.88 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=88.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccC-------------ceecCCHHHHhc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSA-------------ARRMDTLNDLLA 217 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~sL~eLL~ 217 (632)
-++|||||.|.||..||..+...|++|++||++....+.. ...+ .....+++ .++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence 3579999999999999999999999999999986432210 0011 12345664 688
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEE-EcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCc
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLV-NTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPN 296 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLI-NvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pN 296 (632)
+||+||.++|-..+.+.-+-.+....++++++|+ |++.-. ...|.+.+. ..-..+++..|.+++. ++-
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~-~p~~~ig~hf~~Pa~v-------~~L 152 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIK-NPERVAGLHFFNPAPV-------MKL 152 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSS-SGGGEEEEEECSSTTT-------CCE
T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHcc-CccceEEeeecChhhh-------CCe
Confidence 9999999999887765545456777899999994 676543 345555543 2334456666664322 355
Q ss_pred EEEcCC
Q 006758 297 VLILPR 302 (632)
Q Consensus 297 VIiTPH 302 (632)
+.+.|+
T Consensus 153 vevv~g 158 (483)
T 3mog_A 153 VEVVSG 158 (483)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 667665
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=6.5e-07 Score=97.54 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=81.7
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc------------------ccCceecCCHHHHhccC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF------------------PSAARRMDTLNDLLAAS 219 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~------------------~~g~~~~~sL~eLL~~A 219 (632)
++..-++|+|||+|.||..+|..|.. |.+|++||++....+... ........++.+.++.|
T Consensus 32 r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~a 110 (432)
T 3pid_A 32 RGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNA 110 (432)
T ss_dssp ---CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTC
T ss_pred cccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCC
Confidence 34556799999999999999999988 999999999864222000 01234456889999999
Q ss_pred CEEEEccCCChh-------hHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 220 DVISLHCAVTDE-------TIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 220 DVV~l~lPlT~~-------T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
|+|++++|...+ +..+. -..... |++|+++|+.+.-.+--.+.+.+.+.+.
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~ 170 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID 170 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence 999999997531 11222 134556 9999999999988877778888887664
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=95.41 Aligned_cols=107 Identities=9% Similarity=0.133 Sum_probs=80.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--------------------ccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF--------------------PSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--------------------~~g~~~~~sL~eLL~~ADVV 222 (632)
-+|+|||+|.+|..+|..|...|.+|++||++....+... ........++.+.++.||+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 4699999999999999999999999999999875432100 01133457899999999999
Q ss_pred EEccCCChh----------hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 223 SLHCAVTDE----------TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 223 ~l~lPlT~~----------T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++|+|...+ .+..+ ......|++|+++|+.+.-.+--.+.+.+.+.+
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 999886532 34443 456778999999999986555445566666655
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-07 Score=93.19 Aligned_cols=105 Identities=9% Similarity=0.022 Sum_probs=78.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM---SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.++|||||+|+||..+|+.|...|+ +|.+||++....+.... .+.....++.+++..||+|++++|. .....++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl- 80 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC- 80 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence 4689999999999999999999998 89999998754332111 2555567899999999999999984 4455555
Q ss_pred HHHHhc-cCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 238 AECLQH-IKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 238 ~~~L~~-MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
.+.-.. ++++++||++.-|-- .+.|.+.+..
T Consensus 81 ~~l~~~~l~~~~iiiS~~agi~--~~~l~~~l~~ 112 (280)
T 3tri_A 81 EELKDILSETKILVISLAVGVT--TPLIEKWLGK 112 (280)
T ss_dssp HHHHHHHHTTTCEEEECCTTCC--HHHHHHHHTC
T ss_pred HHHHhhccCCCeEEEEecCCCC--HHHHHHHcCC
Confidence 334444 788889998877644 4567777654
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.1e-07 Score=88.71 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=70.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.++|||||+|.||..+|..|...| .+|.+||++... .+.....++.+++..+|+|++++| ...+..++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~ 76 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN 76 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH
Confidence 357999999999999999999888 689999988643 244555688899999999999999 455666653
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+....++ +.++|....| ++.+.+.+.+..
T Consensus 77 -~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~ 105 (262)
T 2rcy_A 77 -NIKPYLS-SKLLISICGG--LNIGKLEEMVGS 105 (262)
T ss_dssp -HSGGGCT-TCEEEECCSS--CCHHHHHHHHCT
T ss_pred -HHHHhcC-CCEEEEECCC--CCHHHHHHHhCC
Confidence 3445564 5555555444 233456666544
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=96.22 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=78.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-------cc-------------ccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-------TF-------------PSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-------~~-------------~~g~~~~~sL~eLL~~ADVV 222 (632)
++|+|||+|.||..+|..|...|.+|++||++....+. .+ ........++.++++.||+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 58999999999999999999999999999998532110 00 11233456889999999999
Q ss_pred EEccCCCh---------hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 223 SLHCAVTD---------ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 223 ~l~lPlT~---------~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++|+|... ..+.++ ......+++|+++|+.+.-.+--.+.+.+.+.+
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence 99999753 344444 456677999999999996544444555555554
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=93.90 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=76.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc------------------CceecCCHHHHhccCCEEEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS------------------AARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~------------------g~~~~~sL~eLL~~ADVV~l 224 (632)
++|+|||+|.||..+|..|.. |.+|++||++....+..... ......++.+.+..||+|++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 379999999999999999999 99999999975322110000 11234567788899999999
Q ss_pred ccCCCh----------hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 225 HCAVTD----------ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 225 ~lPlT~----------~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
++|... .+...+ ..... +++|+++|+.+.-.+--.+.+.+.+...
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~ 134 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD 134 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence 999863 244444 34555 8999999997766665566677766543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-06 Score=93.40 Aligned_cols=132 Identities=16% Similarity=0.095 Sum_probs=85.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----------c-----------CceecCCHHHHhccC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----------S-----------AARRMDTLNDLLAAS 219 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----------~-----------g~~~~~sL~eLL~~A 219 (632)
-++|||||.|.||..||..+...|++|++||++....+.... . ......++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 358999999999999999999999999999987532211000 0 01123466 568899
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEE
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLI 299 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIi 299 (632)
|+|+.++|-..+.+.-+-.+....++++++|+....+- ....|.+++.. .-..+++..| .|.+ .++.|.+
T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~-~~~~ig~hf~-~P~~------~~~lvev 185 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDR-PQLVIGTHFF-SPAH------VMRLLEV 185 (463)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEEC-SSTT------TCCEEEE
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcC-CcceEEeecC-CCcc------cceeEEE
Confidence 99999999766544444455667789999999744433 33466655532 1223455556 3332 3455666
Q ss_pred cCCCC
Q 006758 300 LPRSA 304 (632)
Q Consensus 300 TPHiA 304 (632)
.++..
T Consensus 186 v~g~~ 190 (463)
T 1zcj_A 186 IPSRY 190 (463)
T ss_dssp EECSS
T ss_pred eCCCC
Confidence 66543
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-06 Score=93.77 Aligned_cols=107 Identities=10% Similarity=0.043 Sum_probs=76.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCCCCCcc-------cc------------cCceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLSF--KMSVLYFDVPEGKGKVT-------FP------------SAARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~~~-------~~------------~g~~~~~sL~eLL~~ADV 221 (632)
++|+|||+|.||..+|..|... |.+|++||++....+.. +. .......++.+.+..||+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 5899999999999999999876 79999999875322100 00 012334577788899999
Q ss_pred EEEccCCChh--------------hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 222 ISLHCAVTDE--------------TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 222 V~l~lPlT~~--------------T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
|++|+|.... +...+ ......+++|+++|+.+.-.+--.+.+.+.|.+
T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 9999986432 23333 456677999999999886555445667777776
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=100.19 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=89.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~sL~eLL~~ 218 (632)
++|||||+|.||..||..+...|++|++||++....+.. ...+ +....++ +.+++
T Consensus 315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 393 (715)
T 1wdk_A 315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 393 (715)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence 579999999999999999999999999999986432210 0111 2233466 67899
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
||+||.++|...+.+.-+-.+....++++++|+..+++- ....+.+.+.. .-..+++..|. |.+ .++.|.
T Consensus 394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~-~~~~ig~hf~~-P~~------~~~lve 463 (715)
T 1wdk_A 394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKR-PENFVGMHFFN-PVH------MMPLVE 463 (715)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSC-GGGEEEEECCS-STT------TCCEEE
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhcC-ccceEEEEccC-Ccc------cCceEE
Confidence 999999999887766555556777899999998544432 23445554421 12234555555 322 356666
Q ss_pred EcCCCCCccHHHHHH
Q 006758 299 ILPRSADYSEEVWME 313 (632)
Q Consensus 299 iTPHiAg~T~ea~~~ 313 (632)
+.++-. .++++.+.
T Consensus 464 vv~g~~-t~~e~~~~ 477 (715)
T 1wdk_A 464 VIRGEK-SSDLAVAT 477 (715)
T ss_dssp EEECSS-CCHHHHHH
T ss_pred EEECCC-CCHHHHHH
Confidence 665422 24444433
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=90.23 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=74.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-C-------------c-eecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-A-------------A-RRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-g-------------~-~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|+|||+|.||..+|..|...|.+|.+++++....+..... + . ....++++++..+|+|++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 589999999999999999999999999999875322100000 0 0 234688898999999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
... +..++ ......+++++++|++ -|.......+.+.+..
T Consensus 85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~ 124 (359)
T 1bg6_A 85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE 124 (359)
T ss_dssp GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence 755 35555 4566778999999998 4412233345555554
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-06 Score=79.26 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=79.6
Q ss_pred ccCcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 160 CRGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 160 L~GktVGIIGl----G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
+.-++|+|||+ |.+|..+++.|+..|++|+.+++.... . .|...+.++.|+....|++++++| .+....+
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i-~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v 85 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----I-EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQV 85 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----E-TTEECBSSGGGSCTTCCEEEECSC-HHHHHHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----E-CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHH
Confidence 46678999999 999999999999999999888887521 1 466667899999999999999999 5777777
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+. +.++ +..++++++++. ..++|.++.++..+.
T Consensus 86 ~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 86 AK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE 118 (138)
T ss_dssp HH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred HH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence 74 3444 666778777754 257777777776665
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.22 E-value=9.8e-07 Score=90.53 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=73.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECC--CCCCCCcccccC-----------ceecC--CHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDV--PEGKGKVTFPSA-----------ARRMD--TLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr--~~~~~~~~~~~g-----------~~~~~--sL~eLL~~ADVV~l~lP 227 (632)
++|+|||+|.||..+|..|...|.+|.+|++ +....+.....+ ..... ++.+.+..+|+|++++|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 3799999999999999999988999999999 542211000011 12233 67788899999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCCh---hh-cHHHHHHHHHc
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQ---LL-DDCAVKQLLID 270 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~---iV-De~AL~~AL~s 270 (632)
.. .+..++ ..... +++++++|+++.|- -. ..+.+.+.+.+
T Consensus 81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~ 124 (335)
T 1txg_A 81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL 124 (335)
T ss_dssp GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence 64 555555 34555 88999999998774 11 22345555544
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6e-07 Score=86.46 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=78.7
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-C------ceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-A------ARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-g------~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
++|+||| .|.||+.+|+.|...|++|.+++++....+..... + .....++.+++..+|+|++++|. ..+..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~-~~~~~ 79 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW-EHAID 79 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH-HHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh-hhHHH
Confidence 3699999 99999999999999999999999875332210000 1 01235788899999999999994 44555
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhc------------HHHHHHHHHcCCcceEEeecCCC
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLD------------DCAVKQLLIDGTLAGCALDGAEG 283 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVD------------e~AL~~AL~sg~I~GAaLDVfE~ 283 (632)
++. +....++ ++++|+++.|--.+ .+.|.+.+.. ...++++.+
T Consensus 80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~ 134 (212)
T 1jay_A 80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHT 134 (212)
T ss_dssp HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTT
T ss_pred HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccc
Confidence 543 3334454 99999999865432 4566666642 246677653
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.8e-06 Score=92.63 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=75.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC-CC-EEEEECCCCC----CCC---c---c---cc------------cC-ceecCCHH
Q 006758 162 GLVLGIVGRSASARALATRSLSF-KM-SVLYFDVPEG----KGK---V---T---FP------------SA-ARRMDTLN 213 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf-Gm-~V~~~dr~~~----~~~---~---~---~~------------~g-~~~~~sL~ 213 (632)
-++|+|||+|.||..+|..|... |. +|++||++.. ..+ . . +. .+ .....+ .
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~ 96 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F 96 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence 35899999999999999999999 99 9999999876 211 0 0 00 12 222234 6
Q ss_pred HHhccCCEEEEccCCC--------hhhHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHH
Q 006758 214 DLLAASDVISLHCAVT--------DETIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (632)
Q Consensus 214 eLL~~ADVV~l~lPlT--------~~T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~ 266 (632)
+.+++||+|++|+|.. +++..+. -......|++|+++|+.+.-.+--.+.+.+
T Consensus 97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~ 159 (478)
T 3g79_A 97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK 159 (478)
T ss_dssp GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence 7889999999999975 3333333 245677899999999998766655555554
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.1e-06 Score=87.89 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=71.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCC-------CEEEEECCCCC-----CCCc--------c------cccCceecCCHHHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFK-------MSVLYFDVPEG-----KGKV--------T------FPSAARRMDTLNDL 215 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafG-------m~V~~~dr~~~-----~~~~--------~------~~~g~~~~~sL~eL 215 (632)
.++|+|||.|.||..+|..|...| .+|.+|+++.. ..+. . +..+.....++.++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence 468999999999999999998888 89999998765 1110 0 01123334678888
Q ss_pred hccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 216 L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
+..||+|++++|. ..+..++ .+....+++++++|++..|-.
T Consensus 88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence 9999999999995 4555555 345567789999999988754
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.1e-06 Score=97.64 Aligned_cols=129 Identities=14% Similarity=0.025 Sum_probs=85.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------ccc-------------CceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPS-------------AARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~-------------g~~~~~sL~eLL~~ 218 (632)
++|||||.|.||..||..+...|++|++||++....+.. ... .+....++ +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 579999999999999999999999999999985322110 001 12233466 57899
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEE
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVI 298 (632)
||+||.++|...+.+.-+-.+....++++++|+..+++- ....+.+.+.. .-..+++..|. |.+ .+|.|.
T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~-p~~~iG~hf~~-P~~------~~~lve 461 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTI--DLNKIGERTKS-QDRIVGAHFFS-PAH------IMPLLE 461 (725)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHTTTCSC-TTTEEEEEECS-STT------TCCEEE
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHHhcC-CCCEEEecCCC-Ccc------cCceEE
Confidence 999999999887765555456777899999996544432 23345554422 11234555565 222 356666
Q ss_pred EcCC
Q 006758 299 ILPR 302 (632)
Q Consensus 299 iTPH 302 (632)
+.++
T Consensus 462 vv~g 465 (725)
T 2wtb_A 462 IVRT 465 (725)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6664
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-06 Score=84.86 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=67.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc---Cc-----eecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS---AA-----RRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~---g~-----~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
++|+|||+|.||..+|..|...|.+|.+|+++....+..... +. ....+ .+.+..+|+|++++|.. .+..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~ 78 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSD 78 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHH
Confidence 369999999999999999999999999999986433211111 11 11233 46778999999999975 4556
Q ss_pred hccHHHHhccCCCcEEEEcCCC
Q 006758 235 IINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG 256 (632)
++ ......+++++++|++..|
T Consensus 79 v~-~~l~~~l~~~~~vv~~~~g 99 (291)
T 1ks9_A 79 AV-KSLASTLPVTTPILLIHNG 99 (291)
T ss_dssp HH-HHHHTTSCTTSCEEEECSS
T ss_pred HH-HHHHhhCCCCCEEEEecCC
Confidence 65 3456678899999998665
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-06 Score=93.43 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=75.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------cccccC-------------ceecCCHHHHhccCCE
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTFPSA-------------ARRMDTLNDLLAASDV 221 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------~~~~~g-------------~~~~~sL~eLL~~ADV 221 (632)
.++|+|||+|.||..+|..|...|.+|++||++....+ ..+..+ .....++.+.+..||+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 46899999999999999999999999999998753211 000111 2334678888999999
Q ss_pred EEEccCCC---------hhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 222 ISLHCAVT---------DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 222 V~l~lPlT---------~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
|++|+|.. ..++.++ ......+++|+++|+.+.-.+-..+.+.+.+.
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~ 143 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA 143 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence 99999963 3444444 34566799999999998533322333444443
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=88.24 Aligned_cols=107 Identities=8% Similarity=0.000 Sum_probs=71.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce------------ecCCHHHHhc---cCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR------------RMDTLNDLLA---ASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~------------~~~sL~eLL~---~ADVV~l~lP 227 (632)
++|+|||.|.||..+|..|...|.+|.+|+++....+.....+.. ...+..++.. .+|+|++++|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 479999999999999999999999999999875322110011111 0113344444 8999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~ 272 (632)
. ..+..++ ......+++++++|++..|- -..+.+.+.+...+
T Consensus 84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~ 125 (316)
T 2ew2_A 84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKEN 125 (316)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGG
T ss_pred c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCcc
Confidence 4 4566665 34556788999999998653 22345555554433
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.3e-06 Score=86.12 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=67.2
Q ss_pred ccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 160 CRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 160 L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
+.|+++.|||.|. +|+.+|..|...|++|.+++++. .+|.+.+.+||+|+.++|. .++|.+
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t--------------~~L~~~~~~ADIVI~Avg~----p~~I~~ 209 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT--------------KDIGSMTRSSKIVVVAVGR----PGFLNR 209 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHHSSEEEECSSC----TTCBCG
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc--------------ccHHHhhccCCEEEECCCC----CccccH
Confidence 6899999999986 79999999999999999998642 4789999999999999985 347877
Q ss_pred HHHhccCCCcEEEEcCCCh
Q 006758 239 ECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~ 257 (632)
+. +|+|+++||+|.-.
T Consensus 210 ~~---vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 210 EM---VTPGSVVIDVGINY 225 (276)
T ss_dssp GG---CCTTCEEEECCCEE
T ss_pred hh---ccCCcEEEEeccCc
Confidence 55 59999999999765
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-06 Score=85.54 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLY-FDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~-~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
-++|||||+|.||..+|+.|...|++|.+ +|++....+... ..+.....+..+.+..+|+|++++|. .....++..
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~- 100 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVTQ- 100 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH-
Confidence 36899999999999999999999999999 998865433111 11222334556668999999999994 333333321
Q ss_pred HHhccCCCcEEEEcCCCh
Q 006758 240 CLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~ 257 (632)
+.. .++.++|+++-|-
T Consensus 101 -l~~-~~~~ivi~~~~g~ 116 (220)
T 4huj_A 101 -VSD-WGGQIVVDASNAI 116 (220)
T ss_dssp -CSC-CTTCEEEECCCCB
T ss_pred -hhc-cCCCEEEEcCCCC
Confidence 222 3588999998654
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.8e-07 Score=94.80 Aligned_cols=95 Identities=11% Similarity=0.015 Sum_probs=70.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--------------cccCceecCCHHHHhccCCEEEEccCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT--------------FPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~--------------~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+|+|||+|.||..+|..|...|.+|.+||++....+.. ...++....++.+++..+|+|++++|.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence 79999999999999999999999999999875321100 011233446788999999999999994
Q ss_pred hhhHhhccHH---HHhccCC-CcEEEEcCCChhh
Q 006758 230 DETIQIINAE---CLQHIKP-GAFLVNTGSSQLL 259 (632)
Q Consensus 230 ~~T~~lI~~~---~L~~MK~-GAvLINvgRG~iV 259 (632)
..+..++... ....+++ ++++|+++.|-..
T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~ 129 (366)
T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER 129 (366)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence 5566665331 4456778 9999999876433
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=98.14 E-value=6e-06 Score=85.44 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=68.2
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|..|...|++|.++.++. .+|.+.+.+||+|+.++|. .++|.
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~----p~~I~ 219 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGK----PGLVK 219 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCC----TTCBC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCC----CCCCC
Confidence 58999999999987 79999999999999999997642 3788999999999999984 45787
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
++. +|||+++||+|.-.+
T Consensus 220 ~~~---vk~GavVIDvgi~~~ 237 (286)
T 4a5o_A 220 GEW---IKEGAIVIDVGINRQ 237 (286)
T ss_dssp GGG---SCTTCEEEECCSCSS
T ss_pred HHH---cCCCeEEEEeccccc
Confidence 755 599999999998664
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.8e-06 Score=81.80 Aligned_cols=97 Identities=15% Similarity=0.172 Sum_probs=73.2
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEE-EEECCCCCCCCcccccCceecCCHHHHh-ccCCEEEEccCCChhhHhhccHHHH
Q 006758 164 VLGIVGRSASARALATRSLSFKMSV-LYFDVPEGKGKVTFPSAARRMDTLNDLL-AASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V-~~~dr~~~~~~~~~~~g~~~~~sL~eLL-~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
+|||||+|.||+.+++.+..-|++| .+||++.. ... .+.++++++ .++|+|++|+|.... . +...
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~-~----~~~~ 68 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------MVRGIDEFLQREMDVAVEAASQQAV-K----DYAE 68 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------EESSHHHHTTSCCSEEEECSCHHHH-H----HHHH
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------hcCCHHHHhcCCCCEEEECCCHHHH-H----HHHH
Confidence 6999999999999999998889997 68898742 211 457899999 799999999995322 1 2234
Q ss_pred hccCCCcEEEEcCCChhhcH---HHHHHHHHcCCc
Q 006758 242 QHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGTL 273 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe---~AL~~AL~sg~I 273 (632)
..++.|..+|..+-+..-+. ..|.++.++..+
T Consensus 69 ~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~ 103 (236)
T 2dc1_A 69 KILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR 103 (236)
T ss_dssp HHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence 56778999999988776655 567777665433
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.14 E-value=5.3e-06 Score=85.84 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=68.6
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|..|...|++|.+++++. .+|.+.+.+||+||.+++. .++|.
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p~~I~ 218 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNLLR 218 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSC----TTCBC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCC----CCcCC
Confidence 58999999999998 69999999999999999998642 3788999999999999984 45787
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
++. +|+|+++||+|.-.+
T Consensus 219 ~~~---vk~GavVIDVgi~~~ 236 (285)
T 3p2o_A 219 SDM---VKEGVIVVDVGINRL 236 (285)
T ss_dssp GGG---SCTTEEEEECCCEEC
T ss_pred HHH---cCCCeEEEEeccCcc
Confidence 754 599999999998664
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.6e-06 Score=88.78 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=69.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-------CEEEEECCCCC-----CCCc--------------ccccCceecCCHHHHh
Q 006758 163 LVLGIVGRSASARALATRSLSFK-------MSVLYFDVPEG-----KGKV--------------TFPSAARRMDTLNDLL 216 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-------m~V~~~dr~~~-----~~~~--------------~~~~g~~~~~sL~eLL 216 (632)
++|+|||.|.||..+|..|...| .+|.+|+++.. ..+. .+..++....++.+++
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 47999999999999999998778 89999998764 1110 0111234456788889
Q ss_pred ccCCEEEEccCCChhhHhhccHHHHh----ccCCCcEEEEcCCC
Q 006758 217 AASDVISLHCAVTDETIQIINAECLQ----HIKPGAFLVNTGSS 256 (632)
Q Consensus 217 ~~ADVV~l~lPlT~~T~~lI~~~~L~----~MK~GAvLINvgRG 256 (632)
..||+|++++|. ..+..++. +... .+++++++|++..|
T Consensus 102 ~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~G 143 (375)
T 1yj8_A 102 NDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKG 143 (375)
T ss_dssp TTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCS
T ss_pred cCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCc
Confidence 999999999994 55666653 3444 68889999999877
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.9e-06 Score=84.43 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=57.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
-++|||||+|.||.++|+.|+..|.+|.+|++. ++ +..|| ++++|.. .+..++ .+..
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl-~~l~ 62 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV-EKLS 62 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH-HHHH
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH-HHHH
Confidence 368999999999999999999999999999982 12 56799 8889985 566666 4566
Q ss_pred hccCCCcEEEEcC
Q 006758 242 QHIKPGAFLVNTG 254 (632)
Q Consensus 242 ~~MK~GAvLINvg 254 (632)
..+++|+++|+++
T Consensus 63 ~~l~~g~ivvd~s 75 (232)
T 3dfu_A 63 AFARRGQMFLHTS 75 (232)
T ss_dssp TTCCTTCEEEECC
T ss_pred HhcCCCCEEEEEC
Confidence 6789999999974
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=4.4e-06 Score=86.56 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=68.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|+.|...|++|.+++++. .+|.+.+++||+||.+++. .++|.
T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~lI~ 217 (288)
T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGK----PGFIP 217 (288)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCC----TTCBC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCC----cCcCC
Confidence 58999999999997 59999999999999999997543 4789999999999999994 34788
Q ss_pred HHHHhccCCCcEEEEcCCChhh
Q 006758 238 AECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iV 259 (632)
.+. +|+|+++||+|.-.+-
T Consensus 218 ~~~---vk~GavVIDVgi~r~~ 236 (288)
T 1b0a_A 218 GDW---IKEGAIVIDVGINRLE 236 (288)
T ss_dssp TTT---SCTTCEEEECCCEECT
T ss_pred HHH---cCCCcEEEEccCCccC
Confidence 765 5899999999986643
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.1e-06 Score=85.37 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=67.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|..|...|++|.+++++. .+|.+.+.+||+||.+++. .++|.
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~~I~ 219 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNFIT 219 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCC----CCCCC
Confidence 58999999999998 69999999999999999997642 3788999999999999984 45687
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+. +|+|+++||+|.-.
T Consensus 220 ~~~---vk~GavVIDvgi~~ 236 (285)
T 3l07_A 220 ADM---VKEGAVVIDVGINH 236 (285)
T ss_dssp GGG---SCTTCEEEECCCEE
T ss_pred HHH---cCCCcEEEEecccC
Confidence 754 59999999999765
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-06 Score=90.04 Aligned_cols=89 Identities=10% Similarity=0.127 Sum_probs=66.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-----------CceecCCHHHHhccCCEEEEccCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-----------AARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-----------g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
...+|+|||.|.||..+|..|...|.+|.+|+|+....+..... .+....++.+ +..+|+|++++|.
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~- 90 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV- 90 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-
Confidence 34679999999999999999999999999999975322110001 1344567888 8899999999994
Q ss_pred hhhHhhccHHHHhccC-CCcEEEEcCCC
Q 006758 230 DETIQIINAECLQHIK-PGAFLVNTGSS 256 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK-~GAvLINvgRG 256 (632)
..+..++. .++ +++++|++..|
T Consensus 91 ~~~~~v~~-----~l~~~~~~vv~~~nG 113 (335)
T 1z82_A 91 QYIREHLL-----RLPVKPSMVLNLSKG 113 (335)
T ss_dssp GGHHHHHT-----TCSSCCSEEEECCCC
T ss_pred HHHHHHHH-----HhCcCCCEEEEEeCC
Confidence 66665553 233 79999999876
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-06 Score=91.70 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=73.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc--------------ccccCceecCCHHHHhccCCEEEEccC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV--------------TFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~--------------~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.++|+|||.|.||..+|..|...|.+|.+|+++....+. .++.......++.+.+..||+|++++|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp 108 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP 108 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence 468999999999999999999999999999997432110 011123345688999999999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCChhhc
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLD 260 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVD 260 (632)
. ..++.++ .+....+++++++|++.-|-..+
T Consensus 109 ~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~ 139 (356)
T 3k96_A 109 S-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG 139 (356)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred H-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence 5 3555555 45566788999999998875554
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.1e-06 Score=85.02 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=68.4
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.|+++.|||.|. +|+.+|..|...|++|.++++.. .+|.+.+.+||+||.+++. .++|.
T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~~I~ 223 (301)
T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQ----PEMVK 223 (301)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc--------------ccHHHHhccCCEEEECCCC----cccCC
Confidence 58999999999996 69999999999999999997542 4789999999999999986 34788
Q ss_pred HHHHhccCCCcEEEEcCCChhh
Q 006758 238 AECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iV 259 (632)
.+. +|||+++||+|.-.+-
T Consensus 224 ~~~---vk~GavVIDVgi~~~~ 242 (301)
T 1a4i_A 224 GEW---IKPGAIVIDCGINYVP 242 (301)
T ss_dssp GGG---SCTTCEEEECCCBC--
T ss_pred HHH---cCCCcEEEEccCCCcc
Confidence 766 5899999999986644
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.8e-06 Score=79.01 Aligned_cols=103 Identities=13% Similarity=0.166 Sum_probs=79.3
Q ss_pred CcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGl----G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
-++|+|||+ |.+|..+++.|...|++|+.+++...-.+ -.|...+.++.++....|++++++| .+....++.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~---i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~ 88 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT---LLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ 88 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE---ETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc---cCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH
Confidence 577999999 89999999999999999888888752111 1356667789999999999999999 477777774
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+.++ ...++++|+.+. . ++++.+++++..+.
T Consensus 89 -~~~~-~g~~~i~i~~~~--~--~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 89 -EAIA-IGAKTLWLQLGV--I--NEQAAVLAREAGLS 119 (145)
T ss_dssp -HHHH-HTCCEEECCTTC--C--CHHHHHHHHTTTCE
T ss_pred -HHHH-cCCCEEEEcCCh--H--HHHHHHHHHHcCCE
Confidence 3444 566778887642 2 77888888877665
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-06 Score=88.77 Aligned_cols=91 Identities=23% Similarity=0.188 Sum_probs=69.4
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCC---CcccccCcee------c--CCHHHHhccCCEEEEcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKG---KVTFPSAARR------M--DTLNDLLAASDVISLHC 226 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~---~~~~~~g~~~------~--~sL~eLL~~ADVV~l~l 226 (632)
++.|+++.|||.|.| |+.+|+.|.+.|++|.++|++.... ...+...... . .+|.+.+.+||+||.++
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt 253 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV 253 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC
Confidence 589999999999976 9999999999999999999872111 0111111111 1 57899999999999999
Q ss_pred CCChhhHhh-ccHHHHhccCCCcEEEEcCCC
Q 006758 227 AVTDETIQI-INAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 227 PlT~~T~~l-I~~~~L~~MK~GAvLINvgRG 256 (632)
+. .++ |..+. +|+|+++||+|..
T Consensus 254 g~----p~~vI~~e~---vk~GavVIDVgi~ 277 (320)
T 1edz_A 254 PS----ENYKFPTEY---IKEGAVCINFACT 277 (320)
T ss_dssp CC----TTCCBCTTT---SCTTEEEEECSSS
T ss_pred CC----CcceeCHHH---cCCCeEEEEcCCC
Confidence 85 234 77755 5899999999875
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.8e-06 Score=84.40 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=68.8
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhC--CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSF--KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~Lkaf--Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
++.|+++.|||.|.| |+.+|..|... |++|.+++++. .+|.+.+.+||+||.+++. .++
T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p~~ 216 (281)
T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGV----AHL 216 (281)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCC----TTC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCC----Ccc
Confidence 489999999999985 99999999999 89999997553 4889999999999999984 346
Q ss_pred ccHHHHhccCCCcEEEEcCCChhh
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iV 259 (632)
|..+. +|+|+++||+|.-.+.
T Consensus 217 I~~~~---vk~GavVIDVgi~r~~ 237 (281)
T 2c2x_A 217 LTADM---VRPGAAVIDVGVSRTD 237 (281)
T ss_dssp BCGGG---SCTTCEEEECCEEEET
T ss_pred cCHHH---cCCCcEEEEccCCCCC
Confidence 88766 5899999999986644
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.07 E-value=6.8e-06 Score=85.60 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=67.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHH--HHhccCCEEEEccCCChhhHhh
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLN--DLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~--eLL~~ADVV~l~lPlT~~T~~l 235 (632)
++.|+++.|||.|. +|+.+|..|...|++|.+++++. .+|. +.+.+||+||.++|. .++
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T--------------~~l~l~~~~~~ADIVI~Avg~----p~~ 223 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT--------------STEDMIDYLRTADIVIAAMGQ----PGY 223 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS--------------CHHHHHHHHHTCSEEEECSCC----TTC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC--------------CCchhhhhhccCCEEEECCCC----CCC
Confidence 48999999999998 69999999999999999998743 1455 899999999999995 357
Q ss_pred ccHHHHhccCCCcEEEEcCCChh
Q 006758 236 INAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~i 258 (632)
|.++. +|+|+++||+|.-.+
T Consensus 224 I~~~~---vk~GavVIDvgi~~~ 243 (300)
T 4a26_A 224 VKGEW---IKEGAAVVDVGTTPV 243 (300)
T ss_dssp BCGGG---SCTTCEEEECCCEEE
T ss_pred CcHHh---cCCCcEEEEEeccCC
Confidence 87755 599999999997554
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=6e-06 Score=84.91 Aligned_cols=109 Identities=8% Similarity=0.033 Sum_probs=74.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccc-CceecCCHHHHhccCCEEEEccCCC--hhhHhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPS-AARRMDTLNDLLAASDVISLHCAVT--DETIQI 235 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~-g~~~~~sL~eLL~~ADVV~l~lPlT--~~T~~l 235 (632)
+.|+++.|||.|.+|+.++..|...|+ +|.+++|+.......... ......++.+++..+|+||+++|.. +.....
T Consensus 115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~ 194 (277)
T 3don_A 115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSV 194 (277)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCS
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCC
Confidence 689999999999999999999999999 999999987543311111 1122446677788999999999974 222222
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
+. +..++++++++++.-.+. .. .|+++.++..+
T Consensus 195 l~---~~~l~~~~~V~D~vY~P~-~T-~ll~~A~~~G~ 227 (277)
T 3don_A 195 IS---LNRLASHTLVSDIVYNPY-KT-PILIEAEQRGN 227 (277)
T ss_dssp SC---CTTCCSSCEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred CC---HHHcCCCCEEEEecCCCC-CC-HHHHHHHHCcC
Confidence 32 456789999999987643 23 45554444333
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=88.01 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=74.3
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc--eecCCHHHH---------------hccCCEE
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA--RRMDTLNDL---------------LAASDVI 222 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~--~~~~sL~eL---------------L~~ADVV 222 (632)
-+|.++.|||+|.+|..+|.+|...|.+|++||++....+. +..+. .....++++ ++.||+|
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~-L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv 87 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDK-LQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF 87 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH-HHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence 47899999999999999999999999999999998643221 11110 001122222 4579999
Q ss_pred EEccCCChh--------hHhhc--cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 223 SLHCAVTDE--------TIQII--NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 223 ~l~lPlT~~--------T~~lI--~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
++|+|.... +..+. -......|++|+++|+.+.-.+--.+.+.+.+.
T Consensus 88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~ 144 (431)
T 3ojo_A 88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVI 144 (431)
T ss_dssp EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHH
T ss_pred EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHH
Confidence 999997552 22233 245677899999999999877666666766543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.1e-05 Score=81.70 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=75.5
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCChhh-Hhhc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVTDET-IQII 236 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT~~T-~~lI 236 (632)
+.| +++|||.|.+|++++..|...|+ +|.+++|+....+.... .+.....++.+++..+|+||+++|..-.. ...|
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i 185 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV 185 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC
Confidence 478 99999999999999999999999 89999998643221111 12234567888899999999999964211 1234
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
..+ .++++.+++++.-+ ...-|.+|.+.|
T Consensus 186 ~~~---~l~~~~~V~Divy~---~T~ll~~A~~~G 214 (253)
T 3u62_A 186 SDD---SLKNLSLVYDVIYF---DTPLVVKARKLG 214 (253)
T ss_dssp CHH---HHTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred CHH---HhCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence 443 35789999999988 444455565555
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=82.84 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=74.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---cccc---CceecCCHHHHhccCCEEEEccCCChhh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFPS---AARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~~~~---g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
+.|++++|||.|.+|+.+|..|...|+ +|.+++|+....+. .+.. ......++.+.+..+|+||+++|.....
T Consensus 139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~ 218 (297)
T 2egg_A 139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHP 218 (297)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSS
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCC
Confidence 679999999999999999999999998 99999998633221 1111 1111235667788999999999975421
Q ss_pred H--h-hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 233 I--Q-IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 233 ~--~-lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
. . .+. ...++++++++|+.-.. ... .|.+..++..+
T Consensus 219 ~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T-~ll~~A~~~G~ 257 (297)
T 2egg_A 219 RVEVQPLS---LERLRPGVIVSDIIYNP-LET-KWLKEAKARGA 257 (297)
T ss_dssp CCSCCSSC---CTTCCTTCEEEECCCSS-SSC-HHHHHHHHTTC
T ss_pred CCCCCCCC---HHHcCCCCEEEEcCCCC-CCC-HHHHHHHHCcC
Confidence 1 1 133 34578899999998853 333 36555555443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.8e-05 Score=69.53 Aligned_cols=98 Identities=11% Similarity=-0.020 Sum_probs=65.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccCcee----cCC---HHHH-hccCCEEEEccCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAARR----MDT---LNDL-LAASDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g~~~----~~s---L~eL-L~~ADVV~l~lPlT 229 (632)
...+++|.|+|+|.||..+|+.|+..|.+|+++|++........ ..+... ..+ +.+. +..+|+|++++|..
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~ 95 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD 95 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence 46788999999999999999999999999999998764433211 122211 112 3333 67899999999964
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
..+..+ ...+..+.+...+|-..++..
T Consensus 96 ~~~~~~--~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 96 STNFFI--SMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp HHHHHH--HHHHHHTSCCSEEEEECSSGG
T ss_pred HHHHHH--HHHHHHHCCCCeEEEEECCHH
Confidence 433222 334455556666776666553
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.84 E-value=5e-06 Score=78.45 Aligned_cols=96 Identities=8% Similarity=-0.020 Sum_probs=65.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccccCcee----cCC---HHHH--hccCCEEEEccCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARR----MDT---LNDL--LAASDVISLHCAV 228 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~~g~~~----~~s---L~eL--L~~ADVV~l~lPl 228 (632)
++.+.+|+|+|+|.+|..+|+.|+.. |++|+++|++..........+... ..+ +.++ +..+|+|++++|.
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence 46788999999999999999999998 999999998864322111112211 112 4444 6789999999997
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
...+..++ ..+..+.+...+|....+
T Consensus 116 ~~~~~~~~--~~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 116 HQGNQTAL--EQLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp HHHHHHHH--HHHHHTTCCSEEEEEESS
T ss_pred hHHHHHHH--HHHHHHCCCCEEEEEECC
Confidence 55554443 356667766677765443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.3e-05 Score=82.26 Aligned_cols=105 Identities=16% Similarity=-0.010 Sum_probs=70.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
|+++.|||.|.+|+.++..|...|.+|.+++|+....+.....+.. ..+++++ ..+|+||+++|..-.....++.+.+
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~-~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l 195 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCD-CFMEPPK-SAFDLIINATSASLHNELPLNKEVL 195 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCE-EESSCCS-SCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-EecHHHh-ccCCEEEEcccCCCCCCCCCChHHH
Confidence 8899999999999999999999999999999997554311111111 1234443 3899999999975332223555533
Q ss_pred h-ccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 242 Q-HIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 242 ~-~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
. .++++++++++...+ ... |+++.++.
T Consensus 196 ~~~l~~~~~v~D~vY~P--~T~-ll~~A~~~ 223 (269)
T 3phh_A 196 KGYFKEGKLAYDLAYGF--LTP-FLSLAKEL 223 (269)
T ss_dssp HHHHHHCSEEEESCCSS--CCH-HHHHHHHT
T ss_pred HhhCCCCCEEEEeCCCC--chH-HHHHHHHC
Confidence 2 567788888888765 344 44444443
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.4e-05 Score=78.99 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=67.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCc--ccc--cCc--eecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKV--TFP--SAA--RRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-m~V~~~dr~~~~~~~--~~~--~g~--~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
..++|+|||.|.+|+.+++.+.. ++ -+|.+|||+ ..... .+. .+. ... ++++++.+||+|++|+|.+
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~--- 194 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST--- 194 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence 46789999999999999999875 44 489999999 33221 110 122 334 9999999999999999974
Q ss_pred HhhccHHHHhccCCCcEEEEcCCChh
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
..+|.. ..++||++++++|....
T Consensus 195 ~pvl~~---~~l~~G~~V~~vGs~~p 217 (313)
T 3hdj_A 195 TPLFAG---QALRAGAFVGAIGSSLP 217 (313)
T ss_dssp SCSSCG---GGCCTTCEEEECCCSST
T ss_pred CcccCH---HHcCCCcEEEECCCCCC
Confidence 356654 46899999999987543
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.9e-06 Score=82.24 Aligned_cols=104 Identities=11% Similarity=-0.001 Sum_probs=69.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-----C-CEEEEECCCCCCCCcccc-cCceec-------------CCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSF-----K-MSVLYFDVPEGKGKVTFP-SAARRM-------------DTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-----G-m~V~~~dr~~~~~~~~~~-~g~~~~-------------~sL~eLL~~ADVV 222 (632)
++|+|||+|.||..+|..|... | .+|.+|++ ....+.... .+.... .+..+.+..+|+|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 87 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI 87 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence 4799999999999999999987 9 99999998 321111011 121111 1233567899999
Q ss_pred EEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
++++|... +..++ ......+++++++|.+.-| +-..+.|.+.+..
T Consensus 88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~ 132 (317)
T 2qyt_A 88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPD 132 (317)
T ss_dssp EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCT
T ss_pred EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCC
Confidence 99999754 45554 3444567789999998776 2223455555543
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=3.6e-05 Score=68.27 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=60.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee----cCC---HHHH-hccCCEEEEccCCCh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR----MDT---LNDL-LAASDVISLHCAVTD 230 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~----~~s---L~eL-L~~ADVV~l~lPlT~ 230 (632)
.+.+++|+|+|+|.||+.+++.|...|++|+++|++..........+... ..+ +.++ +..+|+|++++|...
T Consensus 3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (144)
T 2hmt_A 3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI 82 (144)
T ss_dssp ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCH
T ss_pred CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCch
Confidence 35678899999999999999999999999999998753221111111111 112 3333 678999999999752
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
++ ++.-......+.+. .+|-...+.
T Consensus 83 ~~-~~~~~~~~~~~~~~-~ii~~~~~~ 107 (144)
T 2hmt_A 83 QA-STLTTLLLKELDIP-NIWVKAQNY 107 (144)
T ss_dssp HH-HHHHHHHHHHTTCS-EEEEECCSH
T ss_pred HH-HHHHHHHHHHcCCC-eEEEEeCCH
Confidence 32 12223444556666 555555554
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.70 E-value=3.2e-06 Score=85.58 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=56.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEE-EEECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSV-LYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V-~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
++|||||+|.||..+|+.|... ++| .+||++....+... ..+. ...++++++.++|+|++++|... ...+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~~~v----- 74 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-IKTV----- 74 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-HHHH-----
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-HHHH-----
Confidence 3699999999999999999877 888 58998754322111 1122 44577888899999999999743 2333
Q ss_pred Hhcc-CCCcEEEEcCCCh
Q 006758 241 LQHI-KPGAFLVNTGSSQ 257 (632)
Q Consensus 241 L~~M-K~GAvLINvgRG~ 257 (632)
+..+ +++.++||++-+-
T Consensus 75 ~~~l~~~~~ivi~~s~~~ 92 (276)
T 2i76_A 75 ANHLNLGDAVLVHCSGFL 92 (276)
T ss_dssp HTTTCCSSCCEEECCSSS
T ss_pred HHHhccCCCEEEECCCCC
Confidence 3333 6899999998553
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3.5e-05 Score=81.59 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=68.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHh-hCC-CEEEEECCCCCCCCcc---cc--cC--ceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSL-SFK-MSVLYFDVPEGKGKVT---FP--SA--ARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lk-afG-m~V~~~dr~~~~~~~~---~~--~g--~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..++|||||.|.+|+.+++.+. ..+ -+|.+|||+....+.. +. .+ +..+.++++++.+||+|++|+|...
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~- 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA- 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence 5678999999999999998875 344 5899999986433211 10 02 3346789999999999999999852
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
...+|.. ..+++|+.++.+|..
T Consensus 207 ~~pvl~~---~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 207 YATIITP---DMLEPGMHLNAVGGD 228 (350)
T ss_dssp EEEEECG---GGCCTTCEEEECSCC
T ss_pred CCceecH---HHcCCCCEEEECCCC
Confidence 2345554 568899999999864
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.66 E-value=4.2e-05 Score=65.66 Aligned_cols=89 Identities=16% Similarity=0.031 Sum_probs=60.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.+++|+|+|.|.||+.+++.|...| .+|.+++++..........+. ....++.+++..+|+|+.++|... +
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence 4678999999999999999999999 899999987633221111111 112346678889999999998532 2
Q ss_pred HhhccHHHHhccCCCcEEEEcC
Q 006758 233 IQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvg 254 (632)
..++. ...+.|...++.+
T Consensus 83 ~~~~~----~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 83 PIIAK----AAKAAGAHYFDLT 100 (118)
T ss_dssp HHHHH----HHHHTTCEEECCC
T ss_pred HHHHH----HHHHhCCCEEEec
Confidence 22221 1234577777765
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.1e-05 Score=83.40 Aligned_cols=138 Identities=11% Similarity=0.052 Sum_probs=93.6
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC---EEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKM---SVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm---~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
...+|.|||. |..|...++.++++|+ .|.++|.+.... +.. + +.+..+|+||.++......-.+|
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~----~-~~i~~aDivIn~vlig~~aP~Lv 281 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GGP----F-DEIPQADIFINCIYLSKPIAPFT 281 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSC----C-THHHHSSEEEECCCCCSSCCCSC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CCc----h-hhHhhCCEEEECcCcCCCCCccc
Confidence 3567999999 9999999999999998 899999875211 111 1 34569999999999977777899
Q ss_pred cHHHHhcc-CCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCc-----EE--EcCCCCCccH
Q 006758 237 NAECLQHI-KPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPN-----VL--ILPRSADYSE 308 (632)
Q Consensus 237 ~~~~L~~M-K~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pN-----VI--iTPHiAg~T~ 308 (632)
+++.++.| |||++||+++-- .|.... .+|+...|--.+.|.+.... |+ .-+|+-+.-
T Consensus 282 t~e~v~~m~k~gsVIVDVA~D-------------~GG~~e-t~~f~~~~Tt~~~P~~~~~g~~~~~V~~~~v~nlP~~l- 346 (394)
T 2qrj_A 282 NMEKLNNPNRRLRTVVDVSAD-------------TTNPHN-PIPIYTVATVFNKPTVLVPTTAGPKLSVISIDHLPSLL- 346 (394)
T ss_dssp CHHHHCCTTCCCCEEEETTCC-------------TTCTTC-SSCSCCCCCBTTBCCEEECCSSSSCEEEECCTTGGGGS-
T ss_pred CHHHHhcCcCCCeEEEEEecC-------------CCCCcC-cccccccCCccCCCEEEECCCCCCCEEEEEeCChhhhh-
Confidence 99999999 999999999631 222110 22333234444455554333 54 556665543
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006758 309 EVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 309 ea~~~~~~~a~~nL~~fL 326 (632)
.......+.+++..|+
T Consensus 347 --PrtAS~~~sn~llp~l 362 (394)
T 2qrj_A 347 --PREASEFFSHDLLPSL 362 (394)
T ss_dssp --HHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 2334445556666665
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.62 E-value=3.8e-05 Score=79.84 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=66.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC-------------ceecCCHHHHhccCCEEEEccCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------------ARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g-------------~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
.++|+|||.|.||..+|..|...|.+|.++++.. ..+.....+ .....++++ +..+|+|++++|.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~ 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGA-TLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH-HHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH-HHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence 3689999999999999999999999999999852 111000011 112346666 5889999999997
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+..++. .....+++++++|.+.-|
T Consensus 81 -~~~~~~~~-~l~~~l~~~~~iv~~~nG 106 (335)
T 3ghy_A 81 -PALESVAA-GIAPLIGPGTCVVVAMNG 106 (335)
T ss_dssp -HHHHHHHG-GGSSSCCTTCEEEECCSS
T ss_pred -hhHHHHHH-HHHhhCCCCCEEEEECCC
Confidence 45665552 344557889999999888
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.58 E-value=6.3e-05 Score=77.78 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=70.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------ccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------PSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-------------~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
...++|+|||.|.||..+|..|...|.+|.+| ++....+... ........++++ +..+|+|++++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 35678999999999999999999999999999 6542211000 001122345554 58899999999
Q ss_pred CCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 227 AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
|.. .+..++ ......+++++++|.+.-|=-. ++.|.+.+-
T Consensus 95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~~-~~~l~~~~~ 134 (318)
T 3hwr_A 95 KST-DTQSAA-LAMKPALAKSALVLSLQNGVEN-ADTLRSLLE 134 (318)
T ss_dssp CGG-GHHHHH-HHHTTTSCTTCEEEEECSSSSH-HHHHHHHCC
T ss_pred ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCCc-HHHHHHHcC
Confidence 975 566555 3445567899999999776322 245555553
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00027 Score=72.88 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=74.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc-c----c---ccC------ceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV-T----F---PSA------ARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-~----~---~~g------~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||.|.||..+|..|...|.+|.+++|... ... . . ..+ .....+++++...+|+|++++|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~ 81 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV 81 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence 5799999999999999999999999999998752 110 0 0 011 11235677777789999999997
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.. +..++ +.....+++++++|.+.-| +-.++.|.+.+....+.
T Consensus 82 ~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl 124 (320)
T 3i83_A 82 VE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI 124 (320)
T ss_dssp CT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred CC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence 54 33333 3344567889999998876 22346677766554443
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00023 Score=74.70 Aligned_cols=107 Identities=16% Similarity=0.038 Sum_probs=80.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---------------c-----ccc-----cCceecCCHHHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---------------V-----TFP-----SAARRMDTLNDL 215 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---------------~-----~~~-----~g~~~~~sL~eL 215 (632)
.-.+|+|||.|.||..+|..+...|++|+.||+++.... . ... .......++.+.
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 356899999999999999999999999999998753211 0 000 012345688999
Q ss_pred hccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 216 L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+++||+|+=++|-+-+.+.-+-++.=+.++++++|-...++ +....|.+++.
T Consensus 85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~ 136 (319)
T 3ado_A 85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLA 136 (319)
T ss_dssp TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCT
T ss_pred hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhcc
Confidence 99999999999998888777777777888999998765554 34456666554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00012 Score=64.60 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=58.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccCce--e--cCCHHH---H-hccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAAR--R--MDTLND---L-LAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g~~--~--~~sL~e---L-L~~ADVV~l~lPlT~~T 232 (632)
+++|+|+|+|.+|..+|+.|...|.+|.++|++........ ..+.. . ..+.+. . +..+|+|++++|....+
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 57899999999999999999999999999998753221110 01211 1 112222 2 67899999999864333
Q ss_pred HhhccHHHHhccCCCcEEEEc
Q 006758 233 IQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINv 253 (632)
. .-......++++.+++-+
T Consensus 84 ~--~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 84 L--MSSLLAKSYGINKTIARI 102 (140)
T ss_dssp H--HHHHHHHHTTCCCEEEEC
T ss_pred H--HHHHHHHHcCCCEEEEEe
Confidence 2 223455567777766644
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=80.06 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=74.7
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC------CCCcccccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG------KGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~------~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
.-|+||+|+|||||.=|.+=|.+|+-.|++|++--|... .-..+...| ..+.+..|+.+.||+|.+.+|...+
T Consensus 33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~G-f~v~~~~eA~~~ADvV~~L~PD~~q 111 (491)
T 3ulk_A 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-FKVGTYEELIPQADLVINLTPDKQH 111 (491)
T ss_dssp GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTT-CEEEEHHHHGGGCSEEEECSCGGGH
T ss_pred HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCC-CEecCHHHHHHhCCEEEEeCChhhH
Confidence 358999999999999999999999999999988765221 001112223 3456899999999999999997555
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhh
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iV 259 (632)
. .++ .+....||+|+.|+ .+.|--|
T Consensus 112 ~-~vy-~~I~p~lk~G~~L~-faHGFnI 136 (491)
T 3ulk_A 112 S-DVV-RTVQPLMKDGAALG-YSHGFNI 136 (491)
T ss_dssp H-HHH-HHHGGGSCTTCEEE-ESSCHHH
T ss_pred H-HHH-HHHHhhCCCCCEEE-ecCcccc
Confidence 4 344 46999999999987 6777643
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=74.87 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=68.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc------------cccCceecCCHHHHhccCCEEEEccCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT------------FPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~------------~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
.++|+|||.|.||..+|..|...|+ +|..||++....+.. .........++ +.+++||+|+++++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4689999999999999999998888 999999986432210 01112223566 778999999999943
Q ss_pred Ch-----------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 229 TD-----------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 229 T~-----------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
.. ++..++- .+.+....|++++|+++...-+-...+.++
T Consensus 83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~ 134 (317)
T 2ewd_A 83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKV 134 (317)
T ss_dssp SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHh
Confidence 21 1112211 122333457999999987654444444443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.3e-05 Score=69.49 Aligned_cols=92 Identities=11% Similarity=0.093 Sum_probs=62.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee----cCC---HHHH-hccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR----MDT---LNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~----~~s---L~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
..+|.|+|+|.+|+.+|+.|+..|++|+++|+++...+.....+... ..+ |.++ +..+|+|++++|....+.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~ 86 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG 86 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence 35799999999999999999999999999999864332111122211 112 2222 568999999999766654
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
.++ ..+..+.++..+|-..+
T Consensus 87 ~~~--~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 87 EIV--ASARAKNPDIEIIARAH 106 (140)
T ss_dssp HHH--HHHHHHCSSSEEEEEES
T ss_pred HHH--HHHHHHCCCCeEEEEEC
Confidence 443 35566667766665444
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00031 Score=64.87 Aligned_cols=104 Identities=14% Similarity=0.218 Sum_probs=75.6
Q ss_pred cCcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGl----G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
.-++|+|||. |.+|..+++.|+..|++|+.+++...... . .|...+.++.++-...|++++++|. +.+..++
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~--i-~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~ 87 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--L-FGEEAVASLLDLKEPVDILDVFRPP-SALMDHL 87 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--E-TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCc--C-CCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH
Confidence 4578999999 89999999999999999777777621111 1 3566678999998899999999997 6666676
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
. +..+ ...++++++.+-. ++++.+..++..+.
T Consensus 88 ~-~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir 119 (140)
T 1iuk_A 88 P-EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP 119 (140)
T ss_dssp H-HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred H-HHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence 4 3333 3344676665432 57777777776655
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0001 Score=66.29 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=57.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce--e--cCC---HHHH-hccCCEEEEccCCChh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--R--MDT---LNDL-LAASDVISLHCAVTDE 231 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~--~--~~s---L~eL-L~~ADVV~l~lPlT~~ 231 (632)
..+++|.|+|+|.+|+.+|+.|...|.+|+++|+++.........+.. . ..+ +.++ +.++|+|++++|. .+
T Consensus 4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~-~~ 82 (141)
T 3llv_A 4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD-DE 82 (141)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC-HH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC-HH
Confidence 346789999999999999999999999999999876432211111211 1 112 2222 4679999999993 22
Q ss_pred hHhhccHHHHhccCCCcEEEEc
Q 006758 232 TIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINv 253 (632)
.+++-...+..+....+++-+
T Consensus 83 -~n~~~~~~a~~~~~~~iia~~ 103 (141)
T 3llv_A 83 -FNLKILKALRSVSDVYAIVRV 103 (141)
T ss_dssp -HHHHHHHHHHHHCCCCEEEEE
T ss_pred -HHHHHHHHHHHhCCceEEEEE
Confidence 233334455555534444433
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0004 Score=64.24 Aligned_cols=101 Identities=10% Similarity=0.094 Sum_probs=74.6
Q ss_pred CcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGl----G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
-++|+|||. |.+|..+++.|+..|++|+.+++... . . .+...+.+++++....|++++++|. +....++.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~--~--i-~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~ 95 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE--E--V-LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE 95 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS--E--E-TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCC--e--E-CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH
Confidence 688999999 79999999999999999877776641 1 1 3566678999999899999999997 55666663
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+..+ ...+++++..+- .++++.+++++..+.
T Consensus 96 -~~~~-~gi~~i~~~~g~----~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 96 -QAIK-KGAKVVWFQYNT----YNREASKKADEAGLI 126 (144)
T ss_dssp -HHHH-HTCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred -HHHH-cCCCEEEECCCc----hHHHHHHHHHHcCCE
Confidence 3333 333466655432 367788888876655
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00034 Score=72.91 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=66.0
Q ss_pred cccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||++.|||.+.| |+.+|.+|..-|++|.++.... .+|.+.+++||||+.++.- .++|.
T Consensus 176 ~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~----p~~i~ 237 (303)
T 4b4u_A 176 EIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGK----AELIQ 237 (303)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCS----TTCBC
T ss_pred CCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCC----CCccc
Confidence 589999999999875 9999999999999999986543 3789999999999999864 46788
Q ss_pred HHHHhccCCCcEEEEcCCC
Q 006758 238 AECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG 256 (632)
.+ .+|+|+++||+|--
T Consensus 238 ~d---~vk~GavVIDVGin 253 (303)
T 4b4u_A 238 KD---WIKQGAVVVDAGFH 253 (303)
T ss_dssp GG---GSCTTCEEEECCCB
T ss_pred cc---cccCCCEEEEecee
Confidence 75 47899999999863
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00018 Score=77.37 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=74.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCC----CCCC----C---ccccc---CceecCCHHHHhccCCEEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVP----EGKG----K---VTFPS---AARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~----~~~~----~---~~~~~---g~~~~~sL~eLL~~ADVV~ 223 (632)
.+.+.+|.|+|.|..|..+|+.|.+.|. +|+++|++ .... . ..+.. ......+|.+.+..+|+++
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI 268 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 268 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence 4789999999999999999999999999 89999998 3221 0 01111 1112467999999999998
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
-+.. -++|+++.++.|+++++|+.+++-.
T Consensus 269 G~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt 297 (388)
T 1vl6_A 269 GVSR-----GNILKPEWIKKMSRKPVIFALANPV 297 (388)
T ss_dssp ECSC-----SSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred EeCC-----CCccCHHHHHhcCCCCEEEEcCCCC
Confidence 8742 3899999999999999999999854
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00015 Score=75.62 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=65.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhh-CC-CEEEEECCCCCCCCcc---cc---cCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLS-FK-MSVLYFDVPEGKGKVT---FP---SAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lka-fG-m~V~~~dr~~~~~~~~---~~---~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
..++|+|||.|.+|+.+++.+.. .+ -+|.+|||+....+.. +. .... +.++++++ ++|+|++|+|...
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~-- 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK-- 199 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS--
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC--
Confidence 46789999999999999998876 44 5899999986433211 11 1234 67899999 9999999999642
Q ss_pred HhhccHHHHhccCCCcEEEEcCCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
.++.. ..+++|+.++++|..
T Consensus 200 -pv~~~---~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 200 -PVVKA---EWVEEGTHINAIGAD 219 (322)
T ss_dssp -CCBCG---GGCCTTCEEEECSCC
T ss_pred -ceecH---HHcCCCeEEEECCCC
Confidence 55553 468899999999643
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00017 Score=76.57 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=62.7
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEEEEC---CCCCCCCc---c--------cccC--------c-eecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLS-FKMSVLYFD---VPEGKGKV---T--------FPSA--------A-RRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fGm~V~~~d---r~~~~~~~---~--------~~~g--------~-~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..|.. .|.+|.+|+ ++....+. . ...+ . ....++++++..
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 479999999999999999977 599999999 53211110 0 0001 1 133578888999
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
+|+|++++|... +..++ ++....++++++||..
T Consensus 83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL 115 (404)
T ss_dssp CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence 999999999644 44444 3444567889999985
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00036 Score=76.27 Aligned_cols=137 Identities=11% Similarity=0.059 Sum_probs=81.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-------ccc------------ccC-ceecCCHHHHhccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-------VTF------------PSA-ARRMDTLNDLLAASD 220 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-------~~~------------~~g-~~~~~sL~eLL~~AD 220 (632)
+-.+|+|||+|-+|..+|..+...|.+|++||.+....+ .-+ ..+ .....++++.++.||
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad 99 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD 99 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence 346899999999999999999999999999998753211 000 011 223467888999999
Q ss_pred EEEEccCCChh------hHhhcc--HHHHhcc---CCCcEEEEcCCChhhcHHHHH-HHHHcCCcceEEeecCCCCCC--
Q 006758 221 VISLHCAVTDE------TIQIIN--AECLQHI---KPGAFLVNTGSSQLLDDCAVK-QLLIDGTLAGCALDGAEGPQW-- 286 (632)
Q Consensus 221 VV~l~lPlT~~------T~~lI~--~~~L~~M---K~GAvLINvgRG~iVDe~AL~-~AL~sg~I~GAaLDVfE~P~~-- 286 (632)
++++|+|.... ...+.. +.....| .+|.++|.-+.-.+=-.+.+. ..|.+. -.+.-++|...|-.
T Consensus 100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~-~~~~~f~v~~~PErl~ 178 (444)
T 3vtf_A 100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEE-AGGVKFSVASNPEFLR 178 (444)
T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTT-TTTCCCEEEECCCCCC
T ss_pred ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHh-CCCCCceeecCccccc
Confidence 99999984221 112221 1223334 368899998886553344433 333332 22333344333321
Q ss_pred CC---ccccCCCcEE
Q 006758 287 ME---AWVREMPNVL 298 (632)
Q Consensus 287 ~~---~pL~~~pNVI 298 (632)
+. ..+...+.|+
T Consensus 179 eG~a~~d~~~~~riV 193 (444)
T 3vtf_A 179 EGSALEDFFKPDRIV 193 (444)
T ss_dssp TTSHHHHHHSCSCEE
T ss_pred CCccccccccCCcEE
Confidence 11 2455566665
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.39 E-value=5.9e-05 Score=77.60 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=65.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---cccc-CceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFPS-AARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~~~~-g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
++.|+++.|+|.|.+|+.++..|...|+ +|.+++|+....+. .+.. +.....+++++...+|+||+++|......
T Consensus 123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~ 202 (281)
T 3o8q_A 123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE 202 (281)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence 3689999999999999999999999997 99999998643221 0110 01123356666688999999999753221
Q ss_pred -hhccHHHHhccCCCcEEEEcCCCh
Q 006758 234 -QIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 234 -~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
..+.. ..++++++++++.-.+
T Consensus 203 ~~~l~~---~~l~~~~~V~DlvY~P 224 (281)
T 3o8q_A 203 LPAIDP---VIFSSRSVCYDMMYGK 224 (281)
T ss_dssp -CSCCG---GGEEEEEEEEESCCCS
T ss_pred CCCCCH---HHhCcCCEEEEecCCC
Confidence 12332 3456777777776543
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0002 Score=73.51 Aligned_cols=106 Identities=10% Similarity=0.098 Sum_probs=69.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEE-EEECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSV-LYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V-~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+.+++.+... ++++ .++|++.......... +..+.++++++. ++|+|++++|..... +
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-----~ 84 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHA-----E 84 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHH-----H
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHH-----H
Confidence 5799999999999999999876 6775 4788875432211111 344678999996 799999999953322 1
Q ss_pred HHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 006758 239 ECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 239 ~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg~I~ 274 (632)
-....++.|. +++.- .--.+-+..+|.++.++..+.
T Consensus 85 ~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~ 122 (315)
T 3c1a_A 85 ITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM 122 (315)
T ss_dssp HHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence 2223355564 66662 223445556677777765443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00048 Score=70.77 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=72.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc--------C------ceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS--------A------ARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~--------g------~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||.|.||..+|..|...|.+|.+++|+.. .. .... + .....++++ +..+|+|++++|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~-~~-i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~ 79 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDY-EA-IAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT 79 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTH-HH-HHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcH-HH-HHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence 5799999999999999999999999999998751 11 0000 1 111245554 6789999999996
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~G 275 (632)
.. +..++ +..-..+++++++|.+.-|= -.++.|.+.+...++.+
T Consensus 80 ~~-~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~ 123 (312)
T 3hn2_A 80 FA-NSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIG 123 (312)
T ss_dssp GG-GGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEE
T ss_pred CC-cHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEE
Confidence 43 34443 33445678899999988772 22456667665555443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0001 Score=74.80 Aligned_cols=71 Identities=10% Similarity=0.089 Sum_probs=50.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccc-CceecCCHHHHhc-cCCEEEEccCCCh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPS-AARRMDTLNDLLA-ASDVISLHCAVTD 230 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~-g~~~~~sL~eLL~-~ADVV~l~lPlT~ 230 (632)
+.|++++|+|.|.+|+.+|..|...|.+|.+++|+....+. .+.. +.....+++++.. .+|+||+++|...
T Consensus 117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 117 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 192 (272)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence 67899999999999999999999999999999998633221 0100 0011223444434 8999999999743
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00068 Score=69.48 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=70.4
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+. +++.+... +++|. ++|++....+... ..++..+++++++..++|+|++++|......
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~----- 80 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD----- 80 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH-----
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHH-----
Confidence 57999999999997 88888764 78876 8898875432111 1123345678887678999999999643322
Q ss_pred HHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 006758 239 ECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 239 ~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg~I~ 274 (632)
-....++.|. +++.- .-..+-+..+|.++.++..+.
T Consensus 81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~ 118 (319)
T 1tlt_A 81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT 118 (319)
T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2223355564 66662 233455666788888776654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00048 Score=63.08 Aligned_cols=93 Identities=10% Similarity=-0.057 Sum_probs=60.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC----CCcccccCc-------eecCCHHHH-hccCCEEEEccCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK----GKVTFPSAA-------RRMDTLNDL-LAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~----~~~~~~~g~-------~~~~sL~eL-L~~ADVV~l~lPlT 229 (632)
.++|.|+|+|.+|+.+++.|...|.+|+++|++... ....+..+. .....|.++ +..+|+|+++++..
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 82 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND 82 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence 467999999999999999999999999999986411 100111111 112235554 78999999999864
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+ +.-......+.+...+|...+.
T Consensus 83 ~~n--~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 83 ADN--AFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp HHH--HHHHHHHHHHTSSSCEEEECSS
T ss_pred HHH--HHHHHHHHHHCCCCEEEEEECC
Confidence 433 3334556666555555554443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00034 Score=70.86 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=62.9
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccc-CceecCCHHHHh-ccCCEEEEccCCChhhHh
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPS-AARRMDTLNDLL-AASDVISLHCAVTDETIQ 234 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~-g~~~~~sL~eLL-~~ADVV~l~lPlT~~T~~ 234 (632)
+.|+++.|+|.|.||+.+|..|...|.+|++++|+...... .+.. +.....+++++. ..+|+|++++|..... .
T Consensus 117 l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~-~ 195 (271)
T 1nyt_A 117 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-D 195 (271)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-C
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC-C
Confidence 67899999999999999999999999999999998533210 1110 011122344444 5899999999975431 1
Q ss_pred h--ccHHHHhccCCCcEEEEcCCCh
Q 006758 235 I--INAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 235 l--I~~~~L~~MK~GAvLINvgRG~ 257 (632)
+ +.. ..++++.+++|+.-..
T Consensus 196 ~~~i~~---~~l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 196 IPAIPS---SLIHPGIYCYDMFYQK 217 (271)
T ss_dssp CCCCCG---GGCCTTCEEEESCCCS
T ss_pred CCCCCH---HHcCCCCEEEEeccCC
Confidence 1 222 2256777788877654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00028 Score=72.21 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=60.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---ccccCceecCCHHHHh-ccCCEEEEccCCChhhH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TFPSAARRMDTLNDLL-AASDVISLHCAVTDETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~~~~g~~~~~sL~eLL-~~ADVV~l~lPlT~~T~ 233 (632)
++.|+++.|+|.|.+|+.++..|...|+ +|.+++|+....+. .+..+.....+++++- ..+|+||+++|..-...
T Consensus 117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~ 196 (272)
T 3pwz_A 117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTAD 196 (272)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTC
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCC
Confidence 3789999999999999999999999996 99999998643221 1110001223444443 78999999999632110
Q ss_pred -hhccHHHHhccCCCcEEEEcCCC
Q 006758 234 -QIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 234 -~lI~~~~L~~MK~GAvLINvgRG 256 (632)
-.+.. ..++++++++++.-.
T Consensus 197 ~~~i~~---~~l~~~~~V~DlvY~ 217 (272)
T 3pwz_A 197 LPPLPA---DVLGEAALAYELAYG 217 (272)
T ss_dssp CCCCCG---GGGTTCSEEEESSCS
T ss_pred CCCCCH---HHhCcCCEEEEeecC
Confidence 01222 234556666665443
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00013 Score=74.52 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=65.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc---eecCCHHHHh-ccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA---RRMDTLNDLL-AASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~---~~~~sL~eLL-~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|+|||.|.||..+|..|...|.+|.+++|+..........+. ....+..+.+ ..+|+|++++|.. .+..++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~- 80 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIP- 80 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGG-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHH-
Confidence 57999999999999999999889999999988532221111111 1112333443 7899999999964 4555553
Q ss_pred HHHhccCCCcEEEEcCCChhh
Q 006758 239 ECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iV 259 (632)
..-..+++++++|.+.-|=-.
T Consensus 81 ~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 81 HLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp GHHHHEEEEEEEEECCSSCCC
T ss_pred HHHHhhCCCCEEEEeccCccc
Confidence 344456788999998887443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00034 Score=71.99 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=53.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcc---cc-----cCc--eecCCHHHHhccCCEEEEccCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVT---FP-----SAA--RRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~---~~-----~g~--~~~~sL~eLL~~ADVV~l~lPl 228 (632)
+.|+++.|+|.|.+|+.++..|...|+ +|.+++|+....+.. +. ... ...+++.+.+..+|+||++.|.
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~ 204 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSST
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCC
Confidence 689999999999999999999999999 799999986432210 00 011 1234788889999999999996
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00076 Score=70.61 Aligned_cols=94 Identities=13% Similarity=0.214 Sum_probs=63.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc------------ccccCceecCCHHHHhccCCEEEEcc--
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV------------TFPSAARRMDTLNDLLAASDVISLHC-- 226 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~------------~~~~g~~~~~sL~eLL~~ADVV~l~l-- 226 (632)
.++|+|||.|.+|..+|..|...|+ +|..||++....+. ..........++++.+++||+|++++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~ 88 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL 88 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence 4689999999999999999998787 99999998642221 00111222368888899999999999
Q ss_pred CCChhh------H--------hhcc--HHHHhccCCCcEEEEcCC
Q 006758 227 AVTDET------I--------QIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 227 PlT~~T------~--------~lI~--~~~L~~MK~GAvLINvgR 255 (632)
|..+.- + .++- ...+....|.+++|+++-
T Consensus 89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 133 (331)
T 1pzg_A 89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 133 (331)
T ss_dssp SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 654321 1 0110 123334458999998854
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=68.06 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=48.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCCc---ccc-------cCcee-cCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGKV---TFP-------SAARR-MDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~~---~~~-------~g~~~-~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.||..+|..|...| .+|.++|++....+. .+. ..... ..++ +.+..||+|++++|..
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence 47999999999999999998778 699999997532210 000 01111 3566 7789999999999974
Q ss_pred h
Q 006758 230 D 230 (632)
Q Consensus 230 ~ 230 (632)
.
T Consensus 81 ~ 81 (309)
T 1hyh_A 81 K 81 (309)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0007 Score=70.29 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=60.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccc---c-------cCceecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTF---P-------SAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~---~-------~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||.|.||..+|..|...|. +|.++|++....+... . .......+ .+.++.||+|++++|...
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence 479999999999999999988888 9999998753221100 0 00111234 356789999999999643
Q ss_pred h-----------hHhhccHH---HHhccCCCcEEEEcCCCh
Q 006758 231 E-----------TIQIINAE---CLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 231 ~-----------T~~lI~~~---~L~~MK~GAvLINvgRG~ 257 (632)
. +..++ .+ .+....|++++|+++-+-
T Consensus 80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~ 119 (319)
T 1a5z_A 80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPV 119 (319)
T ss_dssp CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSH
T ss_pred CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcH
Confidence 2 11111 22 233335789999986644
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=72.78 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=60.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccC--ceecCCHHHHhccCCEEEEccCCC--hhhH-
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSA--ARRMDTLNDLLAASDVISLHCAVT--DETI- 233 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g--~~~~~sL~eLL~~ADVV~l~lPlT--~~T~- 233 (632)
+.|+++.|||.|.+|+.++..|...|+ +|.+++|+....+ .+... ...+.++.+ + .+|+||+++|.. +.+.
T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~-~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~ 196 (282)
T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTS-EIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE 196 (282)
T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHH-HHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence 689999999999999999999999999 9999999864322 11111 122334445 4 899999999973 1111
Q ss_pred hhccHHHHhccCCCcEEEEcCCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG 256 (632)
-.+..+. ++++.+++++.-.
T Consensus 197 ~pi~~~~---l~~~~~v~DlvY~ 216 (282)
T 3fbt_A 197 SPVDKEV---VAKFSSAVDLIYN 216 (282)
T ss_dssp CSSCHHH---HTTCSEEEESCCS
T ss_pred CCCCHHH---cCCCCEEEEEeeC
Confidence 1133333 4566666666543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0007 Score=69.78 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=51.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCcc-cccCceecCCHHHHhc--cCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~ 231 (632)
.+|||||+|.||+.+++.+... +++|+ ++|++....... ...++. +.++++++. +.|+|++++|....
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h 76 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH 76 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH
Confidence 4799999999999999999876 88877 578876432211 112344 789999998 79999999996443
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00056 Score=73.73 Aligned_cols=151 Identities=14% Similarity=0.190 Sum_probs=97.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC----CC---CC---cccccCc---eecCCHHHHhccCCEEEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE----GK---GK---VTFPSAA---RRMDTLNDLLAASDVISL 224 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~----~~---~~---~~~~~g~---~~~~sL~eLL~~ADVV~l 224 (632)
.+...+|.|+|.|..|..+|+.+.++|. +|+++|++. .. .. ..+.... ....+|.|++..+|+++=
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG 264 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIG 264 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEE
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEe
Confidence 4788999999999999999999999999 999999873 11 11 1111100 013579999999999987
Q ss_pred ccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCC-cceEEeecCCCCCCCCccccCCCcEEEcCCC
Q 006758 225 HCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT-LAGCALDGAEGPQWMEAWVREMPNVLILPRS 303 (632)
Q Consensus 225 ~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~-I~GAaLDVfE~P~~~~~pL~~~pNVIiTPHi 303 (632)
.- +-++|.++.++.|+++++|+.+++-.. |.-=.+|.+.|. |.+-+ -...|- +..|+++=|=+
T Consensus 265 ~S-----apgl~T~EmVk~Ma~~pIIfalsNPt~--E~~pe~a~~~g~~i~atG--rs~~p~-------Q~NN~~~FPgi 328 (398)
T 2a9f_A 265 VS-----APGVLKAEWISKMAARPVIFAMANPIP--EIYPDEALEAGAYIVGTG--RSDFPN-------QINNVLAFPGI 328 (398)
T ss_dssp CC-----STTCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHTTTCSEEEES--CTTSSS-------BCCGGGTHHHH
T ss_pred cC-----CCCCCCHHHHHhhCCCCEEEECCCCCc--cCCHHHHHHhCCeEEEeC--CCCCCC-------cCCceeEcchH
Confidence 73 258999999999999999999999653 322333334344 22111 111121 35577777753
Q ss_pred CCccHH-----HHHHHHHHHHHHHHHH
Q 006758 304 ADYSEE-----VWMEIRDKAISVLQTF 325 (632)
Q Consensus 304 Ag~T~e-----a~~~~~~~a~~nL~~f 325 (632)
+-..-. .-++|...+++-|..+
T Consensus 329 ~~Gal~~~a~~I~d~m~~aAa~alA~~ 355 (398)
T 2a9f_A 329 FRGALDARAKTITVEMQIAAAKGIASL 355 (398)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcCCCHHHHHHHHHHHHhc
Confidence 321111 1245555566666554
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00067 Score=70.02 Aligned_cols=107 Identities=7% Similarity=0.059 Sum_probs=66.8
Q ss_pred cEEEEEeCChhhHHHHHHHh-hC-CCEE-EEECCCCCCCCcc-cccCc-eecCCHHHHhc--cCCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGRSASARALATRSL-SF-KMSV-LYFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-af-Gm~V-~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~ADVV~l~lPlT~~T~~l 235 (632)
.+|||||+|.||+..++.++ .. +++| .++|++....+.. ...+. ..+.++++++. ++|+|++++|.....
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~--- 85 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP--- 85 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH---
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH---
Confidence 57999999999999999987 54 7885 5678876432211 11233 44678999997 699999999953322
Q ss_pred ccHHHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcC-Ccc
Q 006758 236 INAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDG-TLA 274 (632)
Q Consensus 236 I~~~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg-~I~ 274 (632)
+-.+..++.|. +++.- .-..+-+..+|.++.++. .+.
T Consensus 86 --~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~ 125 (346)
T 3cea_A 86 --EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI 125 (346)
T ss_dssp --HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred --HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence 12223455564 44431 112333445577776665 443
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00062 Score=69.46 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=70.1
Q ss_pred CcEEEEEeCChhhHH-HHHHHhh-CCCEEE-EECCCCCCCCcc-cccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGRSASARA-LATRSLS-FKMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGlG~IG~~-vA~~Lka-fGm~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
-.+|||||+|.||+. +++.++. -+++|. ++|++....+.. ...+...+.++++++.+.|+|++++|.......+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~-- 83 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII-- 83 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence 368999999999996 8888876 478877 688876433211 1123334789999999999999999964432222
Q ss_pred HHHHhccCCCc-EEEE-cCCChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPGA-FLVN-TGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~GA-vLIN-vgRG~iVDe~AL~~AL~sg~I~ 274 (632)
...++.|. +|+. -.--.+-+..+|.++.++..+.
T Consensus 84 ---~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~ 119 (308)
T 3uuw_A 84 ---KILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLN 119 (308)
T ss_dssp ---HHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred ---HHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 22233343 5554 2333455666688877765443
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0022 Score=66.19 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=50.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccc-ccCc-eecCCHHHHhc--cCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTF-PSAA-RRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+.+++.++.. +++|. ++|++........ ..+. ..+.++++++. +.|+|++++|...
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 79 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQD 79 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGG
T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence 5799999999999999988765 56655 6688765443211 1233 25689999998 7999999999643
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00086 Score=69.44 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=52.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCc-ccccCceecCCHHHHhc--cCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKV-TFPSAARRMDTLNDLLA--ASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~-~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~ 231 (632)
.+|||||+|.||+.+++.++.. +++|+ ++|++...... ....+...+.++++++. +.|+|++++|....
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h 78 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTH 78 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGH
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhh
Confidence 4799999999999999999876 78876 67887643221 11124556789999998 89999999996443
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.002 Score=66.93 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=65.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEE-EEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSV-LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V-~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
.+|||||+|+||+.+++.+... ++++ .++|++... ... .++..+.++++++.++|+|++++|..... +..
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~ 75 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK--TPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQ 75 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS--SCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHH
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc--CCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHH
Confidence 4799999999999999998876 6775 467877543 211 34444678888888899999999864322 223
Q ss_pred HhccCCCcEEEEcCCChh-hc-H-HHHHHHHHc
Q 006758 241 LQHIKPGAFLVNTGSSQL-LD-D-CAVKQLLID 270 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~i-VD-e-~AL~~AL~s 270 (632)
...++.|.-+|...-..+ +. . +.|.++.++
T Consensus 76 ~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~ 108 (320)
T 1f06_A 76 APKFAQFACTVDTYDNHRDIPRHRQVMNEAATA 108 (320)
T ss_dssp HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHh
Confidence 355666765555443332 22 2 345555554
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0013 Score=68.74 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=61.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---c---------cccCceecCCHHHHhccCCEEEEcc--
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---T---------FPSAARRMDTLNDLLAASDVISLHC-- 226 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~---------~~~g~~~~~sL~eLL~~ADVV~l~l-- 226 (632)
.++|+|||.|.+|..+|..+...|+ +|..||++....+. . .........++ +.+++||+|++++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~ 92 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV 92 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence 3689999999999999999998888 99999998643220 0 01112223567 7889999999999
Q ss_pred CCChh---------hHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 227 AVTDE---------TIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 227 PlT~~---------T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
|..+. +..++- ...+....|++++|+++-
T Consensus 93 p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 93 PRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp CCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 44221 111211 122333348899998754
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0018 Score=66.91 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=61.5
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCCEEEEECCCCCCCCcc---cc---------cCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLS--FKMSVLYFDVPEGKGKVT---FP---------SAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fGm~V~~~dr~~~~~~~~---~~---------~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||.|.+|..+|..|.. +|.+|.++|++....+.. .. .......++++ +++||+|++++|.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence 379999999999999999886 589999999986422200 00 01222356766 8999999999985
Q ss_pred Chh----hH-------hhcc--HHHHhccCCCcEEEEcCCChhhcH
Q 006758 229 TDE----TI-------QIIN--AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 229 T~~----T~-------~lI~--~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
... -. .++. .+.+....|++++|+++- .++.
T Consensus 80 p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN--P~~~ 123 (310)
T 1guz_A 80 PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDI 123 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--chHH
Confidence 321 01 1110 112333357889999844 4444
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00095 Score=68.86 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=59.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cc--cccCc-eecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VT--FPSAA-RRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~~--~~~g~-~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||.|.||..+|..+...|. +|..+|++..... .. +.... ....+ .+.+++||+|+++++...
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence 479999999999999999998888 9999998753111 00 00011 11134 356899999999995432
Q ss_pred h-----------hHhhcc--HHHHhccCCCcEEEEcCCChhh
Q 006758 231 E-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iV 259 (632)
. +..++. ...+....|++++|+++-+.=+
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDL 121 (304)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHH
T ss_pred CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHH
Confidence 1 111211 1233444689999997664433
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00065 Score=70.75 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=52.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCCcc-cccCceecCCHHHHhc--cCCEEEEccCCCh
Q 006758 162 GLVLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf--Gm~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
-.+|||||+|.||+..++.++.. +++|+ ++|++....... ...++..+.++++++. +.|+|++++|...
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 87 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGL 87 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGG
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHH
Confidence 46899999999999999999877 78866 778876432211 1124556789999997 7999999999643
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=67.33 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=61.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCcccccCc--eecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTFPSAA--RRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~~g~--~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.||+.+++.++.. +++|. ++|+++..... .+. ..++++.++ .++|+|++|+|..... +
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~ 80 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----R 80 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----H
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----H
Confidence 5799999999999999999864 78887 68887654332 222 224556555 7899999999953222 2
Q ss_pred HHHhccCCCcEEEEcCC--C-hhhcHHHHHHHHHcCC
Q 006758 239 ECLQHIKPGAFLVNTGS--S-QLLDDCAVKQLLIDGT 272 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgR--G-~iVDe~AL~~AL~sg~ 272 (632)
-....++.|.-+|...= + .+.+...|.++.++..
T Consensus 81 ~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g 117 (304)
T 3bio_A 81 TALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG 117 (304)
T ss_dssp HHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence 23345666777776431 2 2233345666666533
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00059 Score=70.02 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=64.8
Q ss_pred EEEEEeCChhhHHH-HHHHhhCCCEEE-EECCCCCCCCcc-cccCc-eecCCHHHHhc--cCCEEEEccCCChhhHhhcc
Q 006758 164 VLGIVGRSASARAL-ATRSLSFKMSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 164 tVGIIGlG~IG~~v-A~~LkafGm~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI~ 237 (632)
+|||||+|.||+.+ +..+..-+++|+ ++|++....... ...+. ..+.++++++. ++|+|++++|.....
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~----- 76 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHR----- 76 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHH-----
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhH-----
Confidence 69999999999998 777766788866 678876432210 11122 24678999997 499999999953321
Q ss_pred HHHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCc
Q 006758 238 AECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 238 ~~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg~I 273 (632)
+-....|+.|. +++.- .-..+-+..+|.++.++..+
T Consensus 77 ~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~ 114 (332)
T 2glx_A 77 EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV 114 (332)
T ss_dssp HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence 12223345564 55542 12234444556666665444
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=71.43 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=78.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC---EEEEEC----CC--CCCCCc---cc------cc--Cc-eecCCHHHHhc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM---SVLYFD----VP--EGKGKV---TF------PS--AA-RRMDTLNDLLA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm---~V~~~d----r~--~~~~~~---~~------~~--g~-~~~~sL~eLL~ 217 (632)
.+.+++|.|+|.|..|+.++..|...|+ +|+++| |+ ...... .. .. .. ....+|.+.+.
T Consensus 183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~ 262 (439)
T 2dvm_A 183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALK 262 (439)
T ss_dssp CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHT
T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhc
Confidence 4688999999999999999999999998 899999 76 222111 00 00 00 02357899999
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~ 272 (632)
.+|+||.+.|..+ +++..+.+..|++++++++++.- ..+.-+.+|.+.|.
T Consensus 263 ~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~ 312 (439)
T 2dvm_A 263 DADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGA 312 (439)
T ss_dssp TCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTC
T ss_pred cCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCC
Confidence 9999999998633 56666788889999999999543 34444555555554
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.001 Score=69.22 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=52.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCcc-cccCceecCCHHHHh--ccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLL--AASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL--~~ADVV~l~lPlT~~ 231 (632)
.+|||||+|.||+..++.++.. +++|+ ++|++....... ...++..+.++++++ .+.|+|++++|....
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h 79 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH 79 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH
Confidence 5799999999999999999987 88865 678876432211 112444578999999 669999999997544
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00067 Score=70.96 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=51.4
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC---CCCc---ccc------cCceecCC---HHHHhccCCEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG---KGKV---TFP------SAARRMDT---LNDLLAASDVI 222 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~---~~~~---~~~------~g~~~~~s---L~eLL~~ADVV 222 (632)
++.|+++.|+|.|.+|+.+|..|...|+ +|.+++|+.. ..+. .+. .....+.+ +.+.+..+|+|
T Consensus 151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI 230 (315)
T 3tnl_A 151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF 230 (315)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence 3789999999999999999999999999 9999999832 1110 000 00112222 55677899999
Q ss_pred EEccCC
Q 006758 223 SLHCAV 228 (632)
Q Consensus 223 ~l~lPl 228 (632)
|++.|.
T Consensus 231 INaTp~ 236 (315)
T 3tnl_A 231 TNATGV 236 (315)
T ss_dssp EECSST
T ss_pred EECccC
Confidence 999996
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.002 Score=67.21 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=61.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc-----cccCceecCCHHHHhccCCEEEEcc--C
Q 006758 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT-----FPSAARRMDTLNDLLAASDVISLHC--A 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-------~~-----~~~g~~~~~sL~eLL~~ADVV~l~l--P 227 (632)
++|+|||.|.+|..+|..+...|+ +|..+|.+....+ .. .........++ +.+++||+|++++ |
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p 83 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFT 83 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 589999999999999999998888 9999998764222 00 01112223567 7789999999998 5
Q ss_pred CChhh------H--------hhcc--HHHHhccCCCcEEEEcCC
Q 006758 228 VTDET------I--------QIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 228 lT~~T------~--------~lI~--~~~L~~MK~GAvLINvgR 255 (632)
..+.- + .++- .+.+....|++++|+++-
T Consensus 84 ~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 84 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 44321 1 1111 122333358999999754
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00059 Score=70.20 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=65.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceec---------CCH-HHHhccCCEEEEccCCChhh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM---------DTL-NDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~---------~sL-~eLL~~ADVV~l~lPlT~~T 232 (632)
++|+|||.|.||..+|..|. .|.+|.+++|+....+.....+.... .+. .+.+..+|+|++++|.. ++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence 57999999999999999999 89999999987532110000111100 011 24567899999999953 34
Q ss_pred HhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
..++ +.++.+.+++ +|.+.-|=-. ++.|.+.+-..++
T Consensus 81 ~~~l--~~l~~~~~~~-ivs~~nGi~~-~e~l~~~~~~~~v 117 (307)
T 3ego_A 81 QSVF--SSLERIGKTN-ILFLQNGMGH-IHDLKDWHVGHSI 117 (307)
T ss_dssp HHHH--HHTTSSCCCE-EEECCSSSHH-HHHHHTCCCSCEE
T ss_pred HHHH--HHhhcCCCCe-EEEecCCccH-HHHHHHhCCCCcE
Confidence 4443 3444456677 8888776422 2344444333444
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00056 Score=69.74 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=64.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---ccc----C---ceecCCHHHHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---FPS----A---ARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~---~~~----g---~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+.|+++.|+|.|.||+++|..|...| +|++++|+....+.. +.. . .....++.+.+..+|+|+++.|..
T Consensus 126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~ 204 (287)
T 1nvt_A 126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 204 (287)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCC
Confidence 68999999999999999999999999 999999875322110 000 0 011223356678899999999974
Q ss_pred hhhH---hhccHHHHhccCCCcEEEEcCCC
Q 006758 230 DETI---QIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 230 ~~T~---~lI~~~~L~~MK~GAvLINvgRG 256 (632)
.... -.+. ....++++++++|+.-.
T Consensus 205 ~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~ 232 (287)
T 1nvt_A 205 MYPNIDVEPIV--KAEKLREDMVVMDLIYN 232 (287)
T ss_dssp CTTCCSSCCSS--CSTTCCSSSEEEECCCS
T ss_pred CCCCCCCCCCC--CHHHcCCCCEEEEeeeC
Confidence 3210 0120 13567889999998864
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00097 Score=69.16 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=50.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccc-ccCc-eecCCHHHHhc--cCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTF-PSAA-RRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+.+++.+... +++|+ ++|++........ ..+. ..+.++++++. ++|+|++++|...
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 76 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNT 76 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcc
Confidence 4799999999999999999875 78876 5788754322111 1122 35689999998 7999999999643
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00097 Score=68.55 Aligned_cols=107 Identities=10% Similarity=0.074 Sum_probs=65.4
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEEEECCCCCCCCccc-ccCcee-cCCHHHHh-ccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVLYFDVPEGKGKVTF-PSAARR-MDTLNDLL-AASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~~~dr~~~~~~~~~-~~g~~~-~~sL~eLL-~~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+|||||+|.||+. +++.++.. +++|+++|++....+... ..+... +.+..+++ .++|+|++++|.....
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~----- 77 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHS----- 77 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHH-----
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHH-----
Confidence 47999999999984 88888765 788889998764322110 112221 33444555 7899999999943221
Q ss_pred HHHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg~I~ 274 (632)
+-....++.|. +++.- .--.+-+..+|.++.++..+.
T Consensus 78 ~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~ 116 (323)
T 1xea_A 78 TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP 116 (323)
T ss_dssp HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence 11223344553 66663 222344556688877776654
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00064 Score=71.29 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=52.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCCh
Q 006758 162 GLVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
-.+|||||+|.||+..+..++.. +++|. ++|++....+.....++..+.++++++. +.|+|++|+|...
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 35799999999999999999877 78876 5688754322112234556789999998 7899999999644
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0033 Score=67.71 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=67.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--------CEEEEECCCCCCC---------------C----cccccCceecCCHHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFK--------MSVLYFDVPEGKG---------------K----VTFPSAARRMDTLNDL 215 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--------m~V~~~dr~~~~~---------------~----~~~~~g~~~~~sL~eL 215 (632)
.+|+|||.|.-|.++|..|...| .+|..|.+..... . ..++.......+|.+.
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS 114 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence 37999999999999999987644 4688887654210 0 1233345556789999
Q ss_pred hccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 216 LAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 216 L~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
+..||+|++++|. ...+.++ .+....++++..+|+++-|=
T Consensus 115 l~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 115 VKDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp HTTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred HhcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence 9999999999995 3344444 34455678999999998773
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0023 Score=66.02 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=66.4
Q ss_pred cEEEEEeCChhhH-HHHHHHhhCCCEE-EEECCCCCCCCcccc-c-CceecCCHHHHhc--cCCEEEEccCCChhhHhhc
Q 006758 163 LVLGIVGRSASAR-ALATRSLSFKMSV-LYFDVPEGKGKVTFP-S-AARRMDTLNDLLA--ASDVISLHCAVTDETIQII 236 (632)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~LkafGm~V-~~~dr~~~~~~~~~~-~-g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI 236 (632)
.+|||||+|.+|. .++..++.-|++| .++|++....+.... . +...+.++++++. +.|+|++++|.....
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~---- 80 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRA---- 80 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHH----
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHH----
Confidence 4799999999996 6777777678986 577888754431111 1 3445689999997 589999999953322
Q ss_pred cHHHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCc
Q 006758 237 NAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 237 ~~~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg~I 273 (632)
+-.+..|+.|. +|+.- ---.+-+..+|+++.++..+
T Consensus 81 -~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~ 118 (336)
T 2p2s_A 81 -ELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR 118 (336)
T ss_dssp -HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 22233444554 55552 12233444556666655443
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0012 Score=68.29 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=51.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC-CCEEE-EECCCCCCCCccc-ccCc-eecCCHHHHhc--cCCEEEEccCCChh
Q 006758 162 GLVLGIVGRSASARALATRSLSF-KMSVL-YFDVPEGKGKVTF-PSAA-RRMDTLNDLLA--ASDVISLHCAVTDE 231 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~--~ADVV~l~lPlT~~ 231 (632)
-.+|||||+|.||+.+++.++.. +++|+ ++|++........ ..+. ..+.++++++. +.|+|++++|....
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 80 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGH 80 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGH
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHH
Confidence 35799999999999999999875 77876 5688764322111 1133 35689999998 79999999996543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.001 Score=66.85 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=64.2
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC-------------------Cc------cc-cc-Ccee
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG-------------------KV------TF-PS-AARR 208 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~-------------------~~------~~-~~-g~~~ 208 (632)
...|.+++|.|||.|.+|..+|+.|...|+ +|.++|+..-.. +. .. +. .+..
T Consensus 26 q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~ 105 (249)
T 1jw9_B 26 QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITP 105 (249)
T ss_dssp HHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEE
Confidence 356899999999999999999999999998 899999875110 00 00 00 0011
Q ss_pred ----c--CCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 209 ----M--DTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 209 ----~--~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
. .++.+++..+|+|+.+++ +.+++.+++...... +..+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~ 152 (249)
T 1jw9_B 106 VNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG 152 (249)
T ss_dssp ECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred EeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence 1 135677889999999886 467888887665553 3445554
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00097 Score=69.66 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=51.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC---CCc---ccc--cC----ceecCCH---HHHhccCCEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK---GKV---TFP--SA----ARRMDTL---NDLLAASDVI 222 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~---~~~---~~~--~g----~~~~~sL---~eLL~~ADVV 222 (632)
.+.|+++.|+|.|.+|+.++..|...|+ +|.+++|+... .+. .+. .+ .....++ .+.+..+|+|
T Consensus 145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI 224 (312)
T 3t4e_A 145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL 224 (312)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence 3789999999999999999999999999 89999998321 110 000 00 1123344 5668889999
Q ss_pred EEccCCC
Q 006758 223 SLHCAVT 229 (632)
Q Consensus 223 ~l~lPlT 229 (632)
|++.|..
T Consensus 225 INaTp~G 231 (312)
T 3t4e_A 225 TNGTKVG 231 (312)
T ss_dssp EECSSTT
T ss_pred EECCcCC
Confidence 9999973
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0081 Score=69.55 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=82.6
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----------------------cccccCceecCCHHHHhccC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----------------------VTFPSAARRMDTLNDLLAAS 219 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----------------------~~~~~g~~~~~sL~eLL~~A 219 (632)
=++|||||.|.||..||..+...|++|+.+|++..... ...........++ +.+++|
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~a 394 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 394 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSC
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhC
Confidence 36899999999999999999999999999998753211 0000011223344 447899
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
|+||=++|-+-+.+.-+-++.=..++++++|-...++ +....|.+++. ..-..+++=-|.
T Consensus 395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfn 454 (742)
T 3zwc_A 395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFS 454 (742)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCS
T ss_pred CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccC
Confidence 9999999999888877777777889999998766554 44455665543 333445555554
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0013 Score=68.75 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=51.2
Q ss_pred cCcEEEEEeCChhhH-HHHHHHhhC-CCEEE-EECCCCCCCCcc-cccCceecCCHHHHhc--cCCEEEEccCCCh
Q 006758 161 RGLVLGIVGRSASAR-ALATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 161 ~GktVGIIGlG~IG~-~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
.-.+|||||+|.||+ .++..++.. +++|. ++|++....... ...++..+.++++++. +.|+|++++|...
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVL 101 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGG
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHH
Confidence 346899999999999 788888877 78876 668875332211 1124445689999997 5899999999644
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0032 Score=65.57 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=50.7
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~~ 231 (632)
.+|||||+|.||+. .+..++.. +++|. ++|++....... ..+...+.++++++.. .|+|++++|....
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~-~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 80 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHAD-WPAIPVVSDPQMLFNDPSIDLIVIPTPNDTH 80 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTT-CSSCCEESCHHHHHHCSSCCEEEECSCTTTH
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhh-CCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence 57999999999997 77777766 78875 668775432211 2244567899999986 8999999997543
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0066 Score=63.11 Aligned_cols=99 Identities=11% Similarity=0.041 Sum_probs=60.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cc--cccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VT--FPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~~--~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
..+|+|||.|.+|..+|..+...|. +|..+|......+ .. +........+-.+.+++||+|+++.+...
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~ 86 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR 86 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 4689999999999999999998787 9999998764322 00 00011111123567999999999998643
Q ss_pred hhHhh------------cc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 231 ETIQI------------IN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 231 ~T~~l------------I~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
. .++ +- .+.+....|++++|+++ ..+|.-.
T Consensus 87 k-~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~ 130 (318)
T 1y6j_A 87 K-PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIIT 130 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHH
T ss_pred C-CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHH
Confidence 1 111 10 12333346899999974 4555544
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.005 Score=62.70 Aligned_cols=98 Identities=10% Similarity=0.062 Sum_probs=70.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEE-EEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSV-LYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V-~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.++|+++|+|+||+.+++. . ++++ .+|+ .+..+ + +.....+++++++++|+|+-|.+- .-+.+.
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~ge--l--gv~a~~d~d~lla~pD~VVe~A~~-----~av~e~ 76 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RISKD--I--PGVVRLDEFQVPSDVSTVVECASP-----EAVKEY 76 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSCCC--C--SSSEECSSCCCCTTCCEEEECSCH-----HHHHHH
T ss_pred ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--ccccc--c--CceeeCCHHHHhhCCCEEEECCCH-----HHHHHH
Confidence 56889999999999999998 4 7765 5556 22221 2 455567899999999999888742 233334
Q ss_pred HHhccCCCcEEEEcCCChhhcH---HHHHHHHHcCC
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDD---CAVKQLLIDGT 272 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe---~AL~~AL~sg~ 272 (632)
...-|+.|.-+|-++-|.+.|. +.|.++-+.|.
T Consensus 77 ~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg 112 (253)
T 1j5p_A 77 SLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP 112 (253)
T ss_dssp HHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred HHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence 5667889999999999888886 34555544443
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0024 Score=66.23 Aligned_cols=100 Identities=11% Similarity=0.096 Sum_probs=62.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------ccccc---CceecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VTFPS---AARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~~~~~---g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
-++|+|||.|.||..+|..++..|. +|..+|++....+ ..... ......+..+.+++||+|+++.|..
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 4689999999999999999886564 8999998753111 00000 0111123456789999999998764
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.. +..++. .+.+....|.+++|+++. .+|.-+
T Consensus 86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~~~ 130 (316)
T 1ldn_A 86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDILT 130 (316)
T ss_dssp CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHHH
T ss_pred CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHHHH
Confidence 31 111110 123333458888999744 555444
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0036 Score=64.94 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=48.2
Q ss_pred cEEEEEeCChhhHH-HHH-HHhh-CCCEEE-EECCCCCCCCcc-cccCceecCCHHHHhcc--CCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARA-LAT-RSLS-FKMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLAA--SDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~-~Lka-fGm~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+. .+. .+.. -+++|. ++|++....... ...+...+.++++++.. .|+|++++|...
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS 77 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGG
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHH
Confidence 47999999999997 454 3343 478877 778876433211 11245567899999987 899999999644
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0029 Score=63.62 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=64.9
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---ccc----------------------ccC--cee
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTF----------------------PSA--ARR 208 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~----------------------~~g--~~~ 208 (632)
...|++++|.|||.|.+|..+|+.|...|+ ++.++|...-... ..+ ... +..
T Consensus 23 q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~ 102 (251)
T 1zud_1 23 QQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA 102 (251)
T ss_dssp HHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 357899999999999999999999999998 8889887531110 000 000 001
Q ss_pred ------cCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 209 ------MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 209 ------~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..++.+++..+|+|+.++. +.+++.+++...... +.-+|..+
T Consensus 103 ~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~ 150 (251)
T 1zud_1 103 LQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS 150 (251)
T ss_dssp ECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence 1235678888999999987 577888888776653 33456543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0015 Score=68.57 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=47.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc------cccCceecCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT------FPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~------~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
+.++|+|||.|.+|+.+|+.|.. ..+|.++|++....+.. ....+...++|.++++++|+|+.++|.
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~ 87 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPG 87 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCC
Confidence 44579999999999999999976 47899988875322211 111122234577888999999999985
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0015 Score=63.22 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=58.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cCc-------eecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAA-------RRMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g~-------~~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
++|.|+|+|.+|+.+|+.|...|.+|+++|+++........ .+. .....|.++ +.++|+|++++|....+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n- 79 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN- 79 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH-
Confidence 36899999999999999999999999999987643221000 111 111234444 67899999999875443
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
++-......+.+...+|-..+
T Consensus 80 -~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 80 -LFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp -HHHHHHHHHTSCCCEEEECCC
T ss_pred -HHHHHHHHHHcCCCeEEEEEe
Confidence 333344444444555554444
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0035 Score=66.07 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=48.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce--ecC---CHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMD---TLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~--~~~---sL~eLL~~ADVV~l~l 226 (632)
+.|++|+|||.|.+|+.+++.++.+|++|+++|++............. .+. .+.++++.+|+|+...
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~ 83 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEF 83 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecc
Confidence 689999999999999999999999999999999876432211111111 122 3667888899885543
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0019 Score=67.76 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=49.8
Q ss_pred CcEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcccc--cCceecCCHHHHhccC--CEEEEccCC
Q 006758 162 GLVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFP--SAARRMDTLNDLLAAS--DVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~--~g~~~~~sL~eLL~~A--DVV~l~lPl 228 (632)
..+|||||+|.||+. +++.++.. +++|. ++|++......... .+...+.++++++.+. |+|++++|.
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 78 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPP 78 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCc
Confidence 357999999999995 88888876 78876 77887643321111 1344578999999865 999999994
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.011 Score=60.87 Aligned_cols=107 Identities=11% Similarity=0.115 Sum_probs=70.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI 236 (632)
+..+|+|+|+ |.+|+.+++.++.+|++++ .+++... ... ..+...+.++++++. ..|++++++|.. ....++
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~-g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~ 81 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG-GTT--HLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI 81 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TCE--ETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc-cce--eCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH
Confidence 3568999999 9999999999998899844 5666531 111 235566789999998 899999999963 333333
Q ss_pred cHHHHhccCCCcEEEEcCCCh-hhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQ-LLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~-iVDe~AL~~AL~sg~I~ 274 (632)
. +.++ .... .+|..+-|- .-+..+|.++.++..+.
T Consensus 82 ~-ea~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv~ 117 (288)
T 2nu8_A 82 L-EAID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGVR 117 (288)
T ss_dssp H-HHHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred H-HHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 2 2333 2222 334455443 34555788888876553
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.003 Score=64.55 Aligned_cols=96 Identities=13% Similarity=0.256 Sum_probs=60.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---ccccc------Cc--eecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---VTFPS------AA--RRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---~~~~~------g~--~~~~sL~eLL~~ADVV~l~lP 227 (632)
..++|+|||.|.||..+|..|...|. +|.++|++..... ..... .. ....+. +.+..||+|+++++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~ 84 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG 84 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCC
Confidence 34689999999999999999998898 9999998752211 00000 11 111233 56789999999995
Q ss_pred CChh---h--------Hhhcc--HHHHhccCCCcEEEEcCCCh
Q 006758 228 VTDE---T--------IQIIN--AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 228 lT~~---T--------~~lI~--~~~L~~MK~GAvLINvgRG~ 257 (632)
.... + ..++. ...+....+++++|++.-|-
T Consensus 85 ~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~ 127 (319)
T 1lld_A 85 PRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV 127 (319)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence 4321 1 11110 12233346889999987654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=70.47 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=63.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC-------ceecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA-------ARRMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g-------~~~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
+.+|.|+|+|.+|+.+|+.|...|..|+++|.++.........+ +...+.|..+ +.+||+|+++++....+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~ 83 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence 45699999999999999999999999999998864322111111 1122234444 678999999999744443
Q ss_pred hhccHHHHhccCCCcEEEEcCCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG 256 (632)
.-...+..+.|...+|--++.
T Consensus 84 --~i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 84 --QLTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp --HHHHHHHHHCTTCEEEEEESS
T ss_pred --HHHHHHHHhCCCCeEEEEECC
Confidence 334667777788666655443
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0081 Score=60.54 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=55.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
.+|+|+|+|+||+.+++.+...+-++.+ +|+.... ..+...+.++++++ .+|+|+-..+- ..+.. .+
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~~-----~~ 71 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNP-NLLFP-----LL 71 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCH-HHHHH-----HH
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCCh-HHHHH-----HH
Confidence 5799999999999999999876557655 7876532 13444567889988 99998844421 22222 23
Q ss_pred hccCCCcEEEEcCCC
Q 006758 242 QHIKPGAFLVNTGSS 256 (632)
Q Consensus 242 ~~MK~GAvLINvgRG 256 (632)
. ++.|.-+|-...|
T Consensus 72 ~-l~~g~~vVigTTG 85 (243)
T 3qy9_A 72 D-EDFHLPLVVATTG 85 (243)
T ss_dssp T-SCCCCCEEECCCS
T ss_pred H-HhcCCceEeCCCC
Confidence 3 7777777765556
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0061 Score=63.93 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=49.9
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+. .+..++.. +++|. ++|++....... ..+...+.++++++. +.|+|++++|...
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 79 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-LPDVTVIASPEAAVQHPDVDLVVIASPNAT 79 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-CTTSEEESCHHHHHTCTTCSEEEECSCGGG
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-CCCCcEECCHHHHhcCCCCCEEEEeCChHH
Confidence 57999999999997 67777766 78875 668776332211 124556789999998 7899999999644
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0025 Score=69.86 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=69.3
Q ss_pred cCcEEEEEeCChh--hHHHHHHHhh----CCCEEEEECCCCCCCC------cc---cccCceecCCHHHHhccCCEEEEc
Q 006758 161 RGLVLGIVGRSAS--ARALATRSLS----FKMSVLYFDVPEGKGK------VT---FPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 161 ~GktVGIIGlG~I--G~~vA~~Lka----fGm~V~~~dr~~~~~~------~~---~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+..+|+|||.|.+ |..++..+.. .| +|..||+.....+ .. ....+....++++.+++||+|+++
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence 4578999999998 4788877653 46 9999998853211 00 111233457899999999999999
Q ss_pred cCCC-----------hhhHhhccH------------------------HHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 226 CAVT-----------DETIQIINA------------------------ECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 226 lPlT-----------~~T~~lI~~------------------------~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
++.. |.-.|+... ..+....|+|++||++.--=+-..++.+.
T Consensus 83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~ 159 (450)
T 3fef_A 83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV 159 (450)
T ss_dssp CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH
T ss_pred cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH
Confidence 9742 223333211 24445568999999987544444444443
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0041 Score=64.86 Aligned_cols=107 Identities=10% Similarity=0.099 Sum_probs=68.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEE-EEECCCCCCCCc---ccc--cCceecCCHHHHhc--cCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSV-LYFDVPEGKGKV---TFP--SAARRMDTLNDLLA--ASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V-~~~dr~~~~~~~---~~~--~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~ 233 (632)
.+|||||+|.||+.+++.+... ++++ .++|++...... .+. .....+.++++++. +.|+|++++|.....
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~- 85 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV- 85 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence 5799999999999999988875 6776 467877533221 111 01345679999997 589999999953321
Q ss_pred hhccHHHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 006758 234 QIINAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 234 ~lI~~~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg~I~ 274 (632)
+-....|+.|. +|+.- ---.+-+..+|+++.++..+.
T Consensus 86 ----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~ 124 (362)
T 1ydw_A 86 ----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 124 (362)
T ss_dssp ----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred ----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence 22234456665 55542 122344556788888776654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0074 Score=62.37 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=66.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------c-c--ccc--CceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------V-T--FPS--AARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~-~--~~~--g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||.|.+|..+|..|...|. +|..||+.....+ . . +.. .+....+ .+.+++||+|+++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 479999999999999999987777 9999998763221 0 0 111 1222335 7899999999999865
Q ss_pred Chh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 229 TDE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 229 T~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
... +..++. .+.+....|++++|+++ ..+|.-.
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t 125 (294)
T 1oju_A 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMT 125 (294)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHH
Confidence 321 112221 13455567899999998 4566544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0032 Score=61.49 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=59.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-------ecCCHHHH-hccCCEEEEccCCChhh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDET 232 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~ADVV~l~lPlT~~T 232 (632)
..+++.|+|+|.+|+.+|+.|...|. |+++|+++....... .+.. ....|.++ +..+|.|++++|....
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~- 84 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE- 84 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHH-
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHH-
Confidence 34679999999999999999999999 999998764322111 1111 11234444 7889999999986433
Q ss_pred HhhccHHHHhccCCCcEEEEcCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgR 255 (632)
+++-...+..+.++..+|-..+
T Consensus 85 -n~~~~~~a~~~~~~~~iia~~~ 106 (234)
T 2aef_A 85 -TIHCILGIRKIDESVRIIAEAE 106 (234)
T ss_dssp -HHHHHHHHHHHCSSSEEEEECS
T ss_pred -HHHHHHHHHHHCCCCeEEEEEC
Confidence 3444556677777744444333
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0052 Score=63.71 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=58.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCccc-----c-cCceecCCHHHHhccCCEEEEccCCCh---
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTF-----P-SAARRMDTLNDLLAASDVISLHCAVTD--- 230 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~-----~-~g~~~~~sL~eLL~~ADVV~l~lPlT~--- 230 (632)
.++|+|||.|.||..+|..+...|+ +|..+|.......... . .......++ +.+++||+|+++.....
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~ 92 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ 92 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence 3789999999999999999887777 9999998764211010 0 122223566 67899999999973311
Q ss_pred -------hhHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 231 -------ETIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 231 -------~T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
++..++- ...+....|.++||+++.
T Consensus 93 tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 93 SYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 1112211 122333348999999877
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0035 Score=65.62 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=50.5
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+. .+..++.. +++|. ++|++.......+ .+...+.++++++.. .|+|++|+|...
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 77 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERY-PQASIVRSFKELTEDPEIDLIVVNTPDNT 77 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTC-TTSEEESCSHHHHTCTTCCEEEECSCGGG
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhC-CCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence 57999999999997 67777766 78875 5687764432222 245567899999987 899999999643
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.063 Score=55.98 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=69.1
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|.+|++||=| ++..+++..+..||++|.+..|..-.....+ ..| +....++++.++++|||..-.
T Consensus 146 l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~ 225 (307)
T 2i6u_A 146 LRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDT 225 (307)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred cCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence 789999999986 9999999999999999999998753322111 112 344689999999999999843
Q ss_pred CCC-------hh-----hHhhccHHHHhccCCCcEEEEcC
Q 006758 227 AVT-------DE-----TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 227 PlT-------~~-----T~~lI~~~~L~~MK~GAvLINvg 254 (632)
=.. ++ ..--++.+.++.+||+++|..+.
T Consensus 226 w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l 265 (307)
T 2i6u_A 226 WTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL 265 (307)
T ss_dssp SSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred eecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence 210 11 11235778888888888887765
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0094 Score=61.59 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=61.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---cc---------ccCceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---TF---------PSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~~---------~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.||..+|..+...|. +|..+|.+....+. .+ ........++ +.+++||+|+++++..
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 579999999999999999998886 99999987532210 00 0112222566 6789999999998643
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.. +..++- .+.+....|++++|+++- .+|.-+
T Consensus 82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN--Pv~~~t 126 (309)
T 1ur5_A 82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN--PLDAMT 126 (309)
T ss_dssp -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS--SHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC--chHHHH
Confidence 21 111110 123334458889988743 455443
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0092 Score=55.54 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=49.7
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+++|.|+|. |.||+.+++.|...|.+|++++|+..........++ ...+++.+++..+|+|+.+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 478999998 999999999999999999999987643221101111 11235667888999999888754
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0045 Score=59.86 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=51.8
Q ss_pred cccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-ee----c-CCHHHHhccCCEEEEccCCC
Q 006758 157 MRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-RR----M-DTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 157 ~~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-~~----~-~sL~eLL~~ADVV~l~lPlT 229 (632)
...+.|++|.|.|. |.||+.+++.|...|++|++++|+..........++ .. + ..+.+.+..+|+|+.+....
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 35689999999997 999999999999999999999998643221000011 10 0 56778888999999988765
Q ss_pred h
Q 006758 230 D 230 (632)
Q Consensus 230 ~ 230 (632)
.
T Consensus 96 ~ 96 (236)
T 3e8x_A 96 P 96 (236)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0058 Score=63.48 Aligned_cols=101 Identities=14% Similarity=0.161 Sum_probs=64.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cccc---cCceecCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VTFP---SAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~~~~---~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
...+|+|||.|.+|..+|..+...|. +|..||......+ ...+ .......+..+.+++||+|+++.+.
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~ 84 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA 84 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence 45689999999999999999886664 9999998642111 0000 1111112446779999999999975
Q ss_pred Chh---hH--------hhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 229 TDE---TI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 229 T~~---T~--------~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
... ++ .++- .+.+....|++++|+++ ..+|.-.
T Consensus 85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t 130 (317)
T 3d0o_A 85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILA 130 (317)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHH
Confidence 432 11 1211 12334447899999976 4555433
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.005 Score=64.68 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=64.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccccCceecCCHHHHhccCCEEEEccCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
-.+++|+|||.|.||..+|..+...|+ +|..+|......+ ..+........+..+.+++||+|+++...
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 367899999999999999999987776 9999998643111 01111122223446789999999998764
Q ss_pred Chh---hH-hhc--c-------HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 229 TDE---TI-QII--N-------AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 229 T~~---T~-~lI--~-------~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
... |+ .++ | .+.+....|++++|+++. .+|.-+
T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN--Pvdi~t 132 (326)
T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN--PVDILT 132 (326)
T ss_dssp C----------------CHHHHHHHHHTTTCCSEEEECSS--SHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC--chHHHH
Confidence 321 11 112 1 124455568999999974 555443
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0021 Score=70.49 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=66.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccc-cCce--e-----cCCHHHHhccCCEEEEccCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVTFP-SAAR--R-----MDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~-~g~~--~-----~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+.+++|+|+|.|.||+.++..|... |.+|.+++|+......... .+.. . ..++.+++..+|+|++++|..
T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~ 99 (467)
T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT 99 (467)
T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence 47899999999999999999999987 7899999997533211000 1111 1 125667788999999999964
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
-.. . +.. ..++.|..+++++--. -+..+|.++.++.
T Consensus 100 ~~~-~-v~~---a~l~~g~~vvd~~~~~-p~~~~Ll~~Ak~a 135 (467)
T 2axq_A 100 FHP-N-VVK---SAIRTKTDVVTSSYIS-PALRELEPEIVKA 135 (467)
T ss_dssp GHH-H-HHH---HHHHHTCEEEECSCCC-HHHHHHHHHHHHH
T ss_pred hhH-H-HHH---HHHhcCCEEEEeecCC-HHHHHHHHHHHHc
Confidence 221 1 212 2345677888775311 1235555555543
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0099 Score=62.28 Aligned_cols=94 Identities=16% Similarity=0.333 Sum_probs=62.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------cc-----cccCceecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VT-----FPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-------~~-----~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
..++|+|||.|.+|..+|..|...|+ +|..+|+.....+ .. ....+....+. +.+++||+|+++.+
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag 84 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG 84 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence 56789999999999999999988787 9999998764321 00 01112223455 78999999999976
Q ss_pred CChh-----------hHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 228 VTDE-----------TIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 228 lT~~-----------T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
.... +..++- ...+....|++++|+++.
T Consensus 85 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 85 VPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp CCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 4221 111211 123334458999999885
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0057 Score=63.85 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=64.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---cccc-------cCceec-CCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---VTFP-------SAARRM-DTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---~~~~-------~g~~~~-~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.||..+|..+...|+ +|..+|......+ ..+. ...... .+..+.+++||+|+++.+..
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence 479999999999999999887676 9999998764221 0000 011111 24578899999999998754
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHH
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAV 264 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL 264 (632)
.. +..++. .+.+....|.+++|+++. .+|.-..
T Consensus 81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~~t~ 126 (314)
T 3nep_X 81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN--PLDVMTY 126 (314)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS--SHHHHHH
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC--chhHHHH
Confidence 21 222221 124455578999999984 4554443
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0038 Score=65.35 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=51.5
Q ss_pred CcEEEEEeCChhhHHHHHHHh-h-CCCEEE-EECCCCCCCCccc-ccC--ceecCCHHHHhcc--CCEEEEccCCCh
Q 006758 162 GLVLGIVGRSASARALATRSL-S-FKMSVL-YFDVPEGKGKVTF-PSA--ARRMDTLNDLLAA--SDVISLHCAVTD 230 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-a-fGm~V~-~~dr~~~~~~~~~-~~g--~~~~~sL~eLL~~--ADVV~l~lPlT~ 230 (632)
-.+|||||+|.||+..++.+. . -+++|+ ++|++........ ..+ ...+.++++++.. .|+|++++|...
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEA 99 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 457999999999999999988 5 378876 6788765432111 112 4567899999984 899999999644
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.068 Score=55.81 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=66.3
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----ccCceecCCHHHHhccCCEEEEcc----CC-
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAARRMDTLNDLLAASDVISLHC----AV- 228 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----~~g~~~~~sL~eLL~~ADVV~l~l----Pl- 228 (632)
+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+ ...+....++++.++++|||..-+ ..
T Consensus 152 l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e 231 (309)
T 4f2g_A 152 IRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFE 231 (309)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcch
Confidence 78999999996 56778888888899999999998642221111 112345679999999999998853 11
Q ss_pred --Chh-----hHhhccHHHHhccCCCcEEEEcC
Q 006758 229 --TDE-----TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 229 --T~~-----T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..+ ..--++.+.++.+|++++|.-+.
T Consensus 232 ~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l 264 (309)
T 4f2g_A 232 AENEARKRAFADWCVDEEMMSHANSDALFMHCL 264 (309)
T ss_dssp ------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred hhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence 000 11236888888888888888775
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0029 Score=65.59 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=50.6
Q ss_pred cEEEEEeCChhhHHHHHHHh-h-CCCEEE-EECCCCCCCCcc-cccC--ceecCCHHHHhcc--CCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSL-S-FKMSVL-YFDVPEGKGKVT-FPSA--ARRMDTLNDLLAA--SDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-a-fGm~V~-~~dr~~~~~~~~-~~~g--~~~~~sL~eLL~~--ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+..++.++ . -+++|. ++|++....+.. ...+ ...+.++++++.+ .|+|++++|...
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 78 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPA 78 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchh
Confidence 47999999999999999998 5 478866 678875432211 1113 4567899999987 899999999644
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.043 Score=57.11 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=70.2
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc--CceecCCHHHHhccCCEEEEccCCC------h
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPS--AARRMDTLNDLLAASDVISLHCAVT------D 230 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~--g~~~~~sL~eLL~~ADVV~l~lPlT------~ 230 (632)
+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+-. .+....++++.++++|||..-.=.. .
T Consensus 152 l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~ 231 (301)
T 2ef0_A 152 LAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAER 231 (301)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------
T ss_pred cCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccch
Confidence 78999999997 8999999999999999999999865322211100 1344679999999999999843210 1
Q ss_pred hh------HhhccHHHHhccCCCcEEEEcC
Q 006758 231 ET------IQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 231 ~T------~~lI~~~~L~~MK~GAvLINvg 254 (632)
.. .--++.+.++.+||+++|..+.
T Consensus 232 ~~~~~~~~~y~v~~e~l~~a~~~ai~mHpl 261 (301)
T 2ef0_A 232 EKRLRDFQGFQVNGELLKLLRPEGVFLHCL 261 (301)
T ss_dssp CHHHHHTTTCCBCHHHHTTSCTTCEEEECS
T ss_pred hHHHHHhhccccCHHHHHhcCCCcEEECCC
Confidence 11 1236888999999999999887
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.059 Score=56.00 Aligned_cols=95 Identities=13% Similarity=0.191 Sum_probs=68.6
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc--cccC--ceecCCHHHHhccCCEEEEccCCCh-
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSF-KMSVLYFDVPEGKGKVT--FPSA--ARRMDTLNDLLAASDVISLHCAVTD- 230 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~--~~~g--~~~~~sL~eLL~~ADVV~l~lPlT~- 230 (632)
+.|.+|++||= |++..+++..+..| |++|.+..|..-..... ...| .....++++.++++|||..-.=-.+
T Consensus 147 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er 226 (299)
T 1pg5_A 147 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 226 (299)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCccccc
Confidence 78999999998 59999999999999 99999999864322211 1112 2345789999999999988654321
Q ss_pred -----hh-----HhhccHHHHhccCCCcEEEEcC
Q 006758 231 -----ET-----IQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 231 -----~T-----~~lI~~~~L~~MK~GAvLINvg 254 (632)
+- .--++.+.++.+||+++|..+.
T Consensus 227 ~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l 260 (299)
T 1pg5_A 227 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 260 (299)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred ccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence 11 1235777888888888877764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=66.27 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=63.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccCce---ecCC---HHHHhccCCEEEEccCCChhhH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAAR---RMDT---LNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g~~---~~~s---L~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.|.+|.|+|.|.||..+++.++.+|++|++++++....+... ..++. ...+ +.++....|+|+.++.....
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~-- 264 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP-- 264 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence 689999999999999999999999999999998764332111 22221 1122 33444568999988875332
Q ss_pred hhccHHHHhccCCCcEEEEcCCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG 256 (632)
-...+..|+++..+|+++..
T Consensus 265 ---~~~~~~~l~~~G~iv~~g~~ 284 (366)
T 1yqd_A 265 ---LLPLFGLLKSHGKLILVGAP 284 (366)
T ss_dssp ---SHHHHHHEEEEEEEEECCCC
T ss_pred ---HHHHHHHHhcCCEEEEEccC
Confidence 24566778888889988753
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0056 Score=61.09 Aligned_cols=91 Identities=18% Similarity=0.066 Sum_probs=56.1
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccC-cee--cCCHHHHhccCCEEEEccCCChhhH
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSA-ARR--MDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g-~~~--~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+|.|++|.|||.|.+|...++.|...|++|.++++........+ ..+ +.. -.-..+.+..+|+|+.+... ++.
T Consensus 27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d-~~~- 104 (223)
T 3dfz_A 27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATND-QAV- 104 (223)
T ss_dssp ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCC-THH-
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCC-HHH-
Confidence 579999999999999999999999999999999998653211000 000 110 01113456678888766443 322
Q ss_pred hhccHHHHhccCCCcEEEEcC
Q 006758 234 QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvg 254 (632)
|.......+ --++||+.
T Consensus 105 ---N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 105 ---NKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp ---HHHHHHHSC-TTCEEEC-
T ss_pred ---HHHHHHHHh-CCCEEEEe
Confidence 223333334 44667763
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0044 Score=67.53 Aligned_cols=107 Identities=12% Similarity=0.012 Sum_probs=64.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---cccc------CceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPS------AARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~------g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
.+++|+|+|.|.||+.+|+.|...|.+|.+++++...... .+.. ......++.+++..+|+|++++|....
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~ 81 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH 81 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccc
Confidence 4688999999999999999999999999999987532211 0110 011112456788899999999996432
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
.. +.. +.+++|..+++.+.-. -...+|.++.++..+
T Consensus 82 ~~--i~~---a~l~~g~~vvd~~~~~-~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 82 AT--VIK---SAIRQKKHVVTTSYVS-PAMMELDQAAKDAGI 117 (450)
T ss_dssp HH--HHH---HHHHHTCEEEESSCCC-HHHHHTHHHHHHTTC
T ss_pred hH--HHH---HHHhCCCeEEEeeccc-HHHHHHHHHHHHCCC
Confidence 21 222 2234455666653211 113345555444333
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0064 Score=63.78 Aligned_cols=101 Identities=9% Similarity=0.078 Sum_probs=64.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cccc---cCceecCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VTFP---SAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~~~~---~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
..++|+|||.|.||..+|..|...|+ +|..+|......+ ...+ .......+..+.+++||+|+++.+.
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~ 83 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA 83 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence 35789999999999999999987776 9999998653211 0011 1111122335678999999999864
Q ss_pred Chh---hH--------hhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 229 TDE---TI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 229 T~~---T~--------~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
... ++ .++. .+.+....|++++|+++- .+|.-+
T Consensus 84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN--Pvd~~t 129 (326)
T 3pqe_A 84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN--PVDILT 129 (326)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC--hHHHHH
Confidence 221 11 1111 123444568999999985 455443
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.011 Score=56.52 Aligned_cols=92 Identities=11% Similarity=0.105 Sum_probs=61.9
Q ss_pred cEEEEEe-CChhhHHHHHHHh-hCCCEEEEECCCCC-CCCcc--cccC-------ceecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVG-RSASARALATRSL-SFKMSVLYFDVPEG-KGKVT--FPSA-------ARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lk-afGm~V~~~dr~~~-~~~~~--~~~g-------~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|.|.| .|.||+.+++.|. .-|++|++++|+.. ..... ...+ ....+++.+++..+|+|+.+.....
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n 85 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG 85 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence 5799999 6999999999999 89999999998764 22210 1111 1122456778899999999987642
Q ss_pred hhHhhccHHHHhccCC-C-cEEEEcCCChh
Q 006758 231 ETIQIINAECLQHIKP-G-AFLVNTGSSQL 258 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~-G-AvLINvgRG~i 258 (632)
-. ....+..|+. | ..||+++....
T Consensus 86 ~~----~~~~~~~~~~~~~~~iv~iSs~~~ 111 (221)
T 3r6d_A 86 SD----MASIVKALSRXNIRRVIGVSMAGL 111 (221)
T ss_dssp HH----HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred hh----HHHHHHHHHhcCCCeEEEEeecee
Confidence 11 3444555532 2 36888876543
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.1 Score=54.29 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=66.4
Q ss_pred ccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh------
Q 006758 160 CRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD------ 230 (632)
Q Consensus 160 L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~------ 230 (632)
+.|.+|++||=| ++..+++..+..||++|.+..|..-... ....+ ...++++.++++|||..-.--.+
T Consensus 145 l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~-~~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~~ 221 (304)
T 3r7f_A 145 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE-ENTFG--TYVSMDEAVESSDVVMLLRIQNERHQSAV 221 (304)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCT-TCSSC--EECCHHHHHHHCSEEEECCCCTTTCCSSC
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcc-hhhcC--ccCCHHHHhCCCCEEEeccchhhccccch
Confidence 689999999975 6999999999999999999988642221 11112 34689999999999988431100
Q ss_pred ---h--hHhhccHHHHhccCCCcEEEEcC
Q 006758 231 ---E--TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 231 ---~--T~~lI~~~~L~~MK~GAvLINvg 254 (632)
+ ..--++.+.++.+|++++|..+.
T Consensus 222 ~~~~~~~~y~v~~~~l~~a~~~ai~mHcl 250 (304)
T 3r7f_A 222 SQEGYLNKYGLTVERAERMKRHAIIMHPA 250 (304)
T ss_dssp CSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred hHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence 1 11236788888888888887765
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.02 Score=58.86 Aligned_cols=107 Identities=11% Similarity=0.057 Sum_probs=71.5
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI 236 (632)
+..+|+|+|+ |++|+.+++.++..|++++ .++|... .. ...+...+.+++++.. ..|++++++|- +.+..++
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~-g~--~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~ 81 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKG-GM--EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAA 81 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TC--EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCC-Cc--eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHH
Confidence 4578999999 9999999999998899854 6676542 11 1245666789999998 89999999995 3344444
Q ss_pred cHHHHhccCCCcEEEEcCCC-hhhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSS-QLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG-~iVDe~AL~~AL~sg~I~ 274 (632)
.+ .++ ..-. .+|..+.| ...++..|.++.++..+.
T Consensus 82 ~e-a~~-~Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~ 117 (288)
T 1oi7_A 82 LE-AAH-AGIP-LIVLITEGIPTLDMVRAVEEIKALGSR 117 (288)
T ss_dssp HH-HHH-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred HH-HHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 32 222 2222 24444444 234566788888776553
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=60.87 Aligned_cols=100 Identities=24% Similarity=0.339 Sum_probs=64.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC-------ccc-----ccCceecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK-------VTF-----PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~-------~~~-----~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
..++|+|||.|.||..+|..+...|+ +|..+|......+ ... ...+....+ .+.+++||+|+++.+
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag 82 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG 82 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence 45789999999999999999987676 9999998864321 000 111121233 578999999999975
Q ss_pred CChh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 228 VTDE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 228 lT~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.... +..++- .+.+....|++++|+++ ..+|.-.
T Consensus 83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t 129 (321)
T 3p7m_A 83 VPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMV 129 (321)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred cCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence 4311 112221 12334445899999995 4555544
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0054 Score=64.57 Aligned_cols=100 Identities=19% Similarity=0.120 Sum_probs=65.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccccc--CceecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPS--AARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~--g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
..++|+|||.|.||..+|..+...|+ +|..+|......+ ..+.. ......++++ +++||+|+++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 56899999999999999999987777 9999998653211 01111 1122345665 899999999865
Q ss_pred CCh-----------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 228 VTD-----------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 228 lT~-----------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
... .+..++. .+.+....|++++|+++. .+|.-.
T Consensus 99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN--Pvdi~t 145 (330)
T 3ldh_A 99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE--LGTDKN 145 (330)
T ss_dssp CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHHHH
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC--ccHHHH
Confidence 432 1222221 124445579999999984 444433
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0031 Score=68.07 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=65.3
Q ss_pred CcEEEEEeCChhhH-HHHHHHhhC-CCEE-EEECCCCCCCCccc-ccCc-----eecCCHHHHhc--cCCEEEEccCCCh
Q 006758 162 GLVLGIVGRSASAR-ALATRSLSF-KMSV-LYFDVPEGKGKVTF-PSAA-----RRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 162 GktVGIIGlG~IG~-~vA~~Lkaf-Gm~V-~~~dr~~~~~~~~~-~~g~-----~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
-.+|||||+|.||+ .+++.+... +++| .++|++........ ..+. ..+.++++++. +.|+|++++|...
T Consensus 83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~ 162 (433)
T 1h6d_A 83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL 162 (433)
T ss_dssp CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence 35799999999997 899888865 6775 57788753322100 0122 24678999997 7899999999643
Q ss_pred hhHhhccHHHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCc
Q 006758 231 ETIQIINAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg~I 273 (632)
... -....|+.|. +|+.- ---.+-+..+|+++.++..+
T Consensus 163 h~~-----~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~ 202 (433)
T 1h6d_A 163 HAE-----FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK 202 (433)
T ss_dssp HHH-----HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred HHH-----HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCC
Confidence 322 2223344454 55542 11233444556666665443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0094 Score=62.08 Aligned_cols=100 Identities=11% Similarity=0.131 Sum_probs=62.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cc--cccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VT--FPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~~--~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
..+|+|||.|.+|..+|..+...+. +|..+|......+ .. +........+..+.+++||||+++.+...
T Consensus 5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~ 84 (318)
T 1ez4_A 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ 84 (318)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence 3689999999999999999886665 9999998642221 00 10111111244677999999999987643
Q ss_pred h-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 231 E-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
. |..++- .+.+....|++++||++ ..+|.-.
T Consensus 85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t 128 (318)
T 1ez4_A 85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDILT 128 (318)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CcHHHHH
Confidence 2 111221 12334447899999984 4555543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.009 Score=58.04 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=61.5
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..++|.|.| .|.||+.+++.|...| ++|++++|+..........++ ...+++.+++..+|+|+.+......
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~ 101 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL 101 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence 457899999 7999999999999999 899999988643321111111 1223566788899999988765332
Q ss_pred hHhhccHHHHhccCC--CcEEEEcCCCh
Q 006758 232 TIQIINAECLQHIKP--GAFLVNTGSSQ 257 (632)
Q Consensus 232 T~~lI~~~~L~~MK~--GAvLINvgRG~ 257 (632)
.. .....+..|+. ...||+++...
T Consensus 102 ~~--~~~~~~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 102 DI--QANSVIAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp HH--HHHHHHHHHHHTTCCEEEEECCCC
T ss_pred hH--HHHHHHHHHHHcCCCEEEEEecce
Confidence 11 11233344422 23677777644
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0063 Score=60.30 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=43.5
Q ss_pred cEEEEEeCChhhHHHHHH--HhhCCCEEE-EECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATR--SLSFKMSVL-YFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~--LkafGm~V~-~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
.+|+|||.|++|+.+|+. ....|++|. ++|.++....... ...+...+++++++++.|+|++++|.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs 155 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA 155 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence 569999999999999994 345678755 5577664332111 11233467899999777999999995
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.011 Score=62.41 Aligned_cols=65 Identities=22% Similarity=0.232 Sum_probs=48.0
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-----ecCCHHHHhccCCEEEE
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RMDTLNDLLAASDVISL 224 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~-----~~~sL~eLL~~ADVV~l 224 (632)
+.+++|+|||.|.+|+.+++.++.+|++|+++|++.......+..... ..+.+.+++..+|+|+.
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence 579999999999999999999999999999999876433211211111 11236677888998854
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.023 Score=61.02 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=69.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
--++-|+|.|.+|+.+|+.++.+|++|.++|+...... .+-++.+|-++...|. ..+.. +
T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~-------------~~~fp~a~~~~~~~p~-----~~~~~--~ 263 (386)
T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT-------------TARFPTADEVVVDWPH-----RYLAA--Q 263 (386)
T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC-------------TTTCSSSSEEEESCHH-----HHHHH--H
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc-------------cccCCCceEEEeCChH-----HHHHh--h
Confidence 34799999999999999999999999999998763211 1223566656555441 11111 1
Q ss_pred h---ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEE
Q 006758 242 Q---HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277 (632)
Q Consensus 242 ~---~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAa 277 (632)
. .+.+++++|=+.++.-.|...|..+|+.+..+..+
T Consensus 264 ~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG 302 (386)
T 2we8_A 264 AEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG 302 (386)
T ss_dssp HHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred ccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence 1 26788899999999999999999999887344333
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0065 Score=67.06 Aligned_cols=114 Identities=15% Similarity=0.248 Sum_probs=71.6
Q ss_pred CcEEEEEeCChh--hHHHHHHHh---hC-CCEEEEECCCCCCCC------------cccccCceecCCHHHHhccCCEEE
Q 006758 162 GLVLGIVGRSAS--ARALATRSL---SF-KMSVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 162 GktVGIIGlG~I--G~~vA~~Lk---af-Gm~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~ADVV~ 223 (632)
.++|+|||.|.+ |.++|..+. ++ |.+|..||+.....+ ...+..+....++.+.+++||+|+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 468999999997 465566654 34 889999999763211 001122333467888999999999
Q ss_pred EccCCCh---------------------hh----------------Hhhcc--HHHHhccCCCcEEEEcCCChhhcHHHH
Q 006758 224 LHCAVTD---------------------ET----------------IQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAV 264 (632)
Q Consensus 224 l~lPlT~---------------------~T----------------~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL 264 (632)
+++|... +| ..++- ...+....|+|+|||++---=+-..++
T Consensus 83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~ 162 (480)
T 1obb_A 83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV 162 (480)
T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence 9997411 11 01110 134555669999999987554444555
Q ss_pred HHHHHcCCcceE
Q 006758 265 KQLLIDGTLAGC 276 (632)
Q Consensus 265 ~~AL~sg~I~GA 276 (632)
.+ +...++.|.
T Consensus 163 ~k-~p~~rviG~ 173 (480)
T 1obb_A 163 TR-TVPIKAVGF 173 (480)
T ss_dssp HH-HSCSEEEEE
T ss_pred HH-CCCCcEEec
Confidence 44 455556554
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.014 Score=55.58 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=49.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc------cccCceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT------FPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~------~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|.|+| .|.||+.+++.|...|.+|++++|+....... +........++.+++..+|+|+.+....
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~ 78 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG 78 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence 6899999 59999999999999999999999986433211 0011112345678889999999887654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=61.70 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=63.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------cc--cccCceecCCHHHHhccCCEEEEccCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK-------VT--FPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~~--~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
...+|+|||.|.+|..+|..+...++ +|..+|......+ .. +........+..+.+++||||+++.+..
T Consensus 8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~ 87 (326)
T 2zqz_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 45789999999999999999886665 8999998642221 00 1011111124567799999999998764
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.. |..++- .+.+....|.+++||+ +..+|.-+
T Consensus 88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t 132 (326)
T 2zqz_A 88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDILT 132 (326)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHHHH
Confidence 32 111211 1233334689999998 44555544
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.028 Score=58.28 Aligned_cols=108 Identities=11% Similarity=0.050 Sum_probs=73.4
Q ss_pred ccCcEEEEE-eC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChhhHh
Q 006758 160 CRGLVLGIV-GR-SASARALATRSLSFKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQ 234 (632)
Q Consensus 160 L~GktVGII-Gl-G~IG~~vA~~LkafGm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~ 234 (632)
+..++++|| |+ |+.|..+++.++.+|++++ .++|.....+ -.+...+.+++++.. ..|++++++|. +....
T Consensus 11 ~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~ 86 (305)
T 2fp4_A 11 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT---HLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAA 86 (305)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHH
T ss_pred hCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcce---ECCeeeechHHHhhhcCCCCEEEEecCH-HHHHH
Confidence 466788999 99 9999999999999999844 5666532111 245666779999998 89999999995 33344
Q ss_pred hccHHHHhccCCCcEEEEcCCCh-hhcHHHHHHHHHcC-Ccc
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQ-LLDDCAVKQLLIDG-TLA 274 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~-iVDe~AL~~AL~sg-~I~ 274 (632)
++.+..-..+ ..+|+.+-|- .-++.+|++..++. .+.
T Consensus 87 ~~~e~i~~Gi---~~iv~~t~G~~~~~~~~l~~~a~~~~gi~ 125 (305)
T 2fp4_A 87 AINEAIDAEV---PLVVCITEGIPQQDMVRVKHRLLRQGKTR 125 (305)
T ss_dssp HHHHHHHTTC---SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHCCC---CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence 4433222222 2446666664 33455788888876 554
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.083 Score=55.54 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=69.1
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|.+|+|||=| ++..+++..+..||++|.+..|..-.....+ ..| +....++++.++++|||..-.
T Consensus 165 l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~ 244 (325)
T 1vlv_A 165 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 244 (325)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred cCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEecc
Confidence 789999999985 9999999999999999999998653222111 112 334688999999999998843
Q ss_pred CC-------Chh-----hHhhccHHHHhcc-CCCcEEEEcC
Q 006758 227 AV-------TDE-----TIQIINAECLQHI-KPGAFLVNTG 254 (632)
Q Consensus 227 Pl-------T~~-----T~~lI~~~~L~~M-K~GAvLINvg 254 (632)
=. .++ ..--++.+.++.+ ||+++|.-+.
T Consensus 245 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L 285 (325)
T 1vlv_A 245 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL 285 (325)
T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence 21 011 1133578888888 8888888775
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.005 Score=64.39 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=50.1
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~ 231 (632)
.+|||||+|.||+. .+..++.. +++|. ++|++.......+ .+...+.++++++. +.|+|++++|....
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~-~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H 78 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDF-PDAEVVHELEEITNDPAIELVIVTTPSGLH 78 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHC-TTSEEESSTHHHHTCTTCCEEEECSCTTTH
T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhC-CCCceECCHHHHhcCCCCCEEEEcCCcHHH
Confidence 57999999999997 67777766 78875 5677653321112 24556789999998 68999999997543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0096 Score=65.50 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=47.6
Q ss_pred CcEEEEEeCChh-hHHHHHHHhhC-----CCEEEEECCCCCCCC------------cccccCceecCCHHHHhccCCEEE
Q 006758 162 GLVLGIVGRSAS-ARALATRSLSF-----KMSVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 162 GktVGIIGlG~I-G~~vA~~Lkaf-----Gm~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~ADVV~ 223 (632)
..+|+|||.|.. |.++|..|... +.+|..||+.....+ ...+..+....++.+.+++||+|+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 468999999998 66676655443 668999999763211 001122333468889999999999
Q ss_pred EccCCC
Q 006758 224 LHCAVT 229 (632)
Q Consensus 224 l~lPlT 229 (632)
+++|..
T Consensus 108 iaag~~ 113 (472)
T 1u8x_X 108 AHIRVG 113 (472)
T ss_dssp ECCCTT
T ss_pred EcCCCc
Confidence 999973
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.014 Score=55.69 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=49.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----cccCcee-cCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT-----FPSAARR-MDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----~~~g~~~-~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|.|.| .|.||+.+++.|...|++|++++|+....... +...... ..++.+++..+|+|+.+.....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~ 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC
Confidence 3688999 89999999999999999999999986433211 0011112 2356677889999999987654
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.073 Score=55.84 Aligned_cols=95 Identities=8% Similarity=0.063 Sum_probs=65.4
Q ss_pred ccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
+.|.+|+|||=| ++..+++..+..||++|.+..|..-.....+ ...+....++++.++++|||..-+-
T Consensus 153 l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w 232 (321)
T 1oth_A 153 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW 232 (321)
T ss_dssp CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred cCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEecc
Confidence 789999999985 4777777778889999999998753221111 1123446899999999999999431
Q ss_pred CC----hhh----H----hhccHHHHhccCCCcEEEEcC
Q 006758 228 VT----DET----I----QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 228 lT----~~T----~----~lI~~~~L~~MK~GAvLINvg 254 (632)
.. .+. . --++.+.++.+|++++|..+.
T Consensus 233 ~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l 271 (321)
T 1oth_A 233 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL 271 (321)
T ss_dssp SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred ccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence 11 110 0 225777777778887777764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.026 Score=54.24 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=52.6
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccc-------cCceecCCHHHHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGKVTFP-------SAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~-------~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+.+++|.|.| .|.||+.+++.|...|. +|++++|+......... .......++.+++...|+|+.+....
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~ 95 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 95 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence 5688999999 69999999999999999 99999987643321110 11122345677888999999998765
Q ss_pred h
Q 006758 230 D 230 (632)
Q Consensus 230 ~ 230 (632)
.
T Consensus 96 ~ 96 (242)
T 2bka_A 96 R 96 (242)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.015 Score=63.44 Aligned_cols=100 Identities=12% Similarity=0.174 Sum_probs=71.3
Q ss_pred cccCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccC
Q 006758 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+.|++|+|+|+. .-...|++.|...|++|.+|||...... ..+ .+.....++++.+..+|+|++++.
T Consensus 319 ~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~~ad~vvi~t~ 397 (446)
T 4a7p_A 319 DVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKML-TDVEFVENPYAAADGADALVIVTE 397 (446)
T ss_dssp CCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGC-SSCCBCSCHHHHHTTBSEEEECSC
T ss_pred cCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhc-CCceEecChhHHhcCCCEEEEeeC
Confidence 4789999999997 6789999999999999999999863211 112 134455788999999999999987
Q ss_pred CChhhHhhccHHHH-hccCCCcEEEEcCCChhhcHHHH
Q 006758 228 VTDETIQIINAECL-QHIKPGAFLVNTGSSQLLDDCAV 264 (632)
Q Consensus 228 lT~~T~~lI~~~~L-~~MK~GAvLINvgRG~iVDe~AL 264 (632)
... -+. ++-+.+ +.|+ +.+||++ |+ +.|.+.+
T Consensus 398 ~~~-f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~ 430 (446)
T 4a7p_A 398 WDA-FRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL 430 (446)
T ss_dssp CTT-TTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred CHH-hhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence 633 222 444444 4465 5678885 54 4565544
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.014 Score=52.90 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=71.9
Q ss_pred cEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGl----G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
++|+|||. |..|..+.+.|+.+|++|+-+++..... .|...+.+|.++-. -|++++++|- +.+..++.+
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~e 77 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINP-QNQLSEYNY 77 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHHH
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHHH
Confidence 67999998 5689999999999999999999875321 35566778888877 9999999995 445555533
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
. ..+...+++++.|- .++++.+..++..|.
T Consensus 78 -~-~~~g~k~v~~~~G~----~~~e~~~~a~~~Gir 107 (122)
T 3ff4_A 78 -I-LSLKPKRVIFNPGT----ENEELEEILSENGIE 107 (122)
T ss_dssp -H-HHHCCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred -H-HhcCCCEEEECCCC----ChHHHHHHHHHcCCe
Confidence 2 23444567766543 356777777776665
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.016 Score=58.95 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=49.3
Q ss_pred cccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 157 MRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 157 ~~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
...+.+++|.|.|. |.||+.+++.|...|++|+++++...... ..+.........+.+++..+|+|+.+....
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 88 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM 88 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence 35679999999998 99999999999999999999998764311 111111222345678899999999887654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0086 Score=61.10 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=47.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc-cCceecCCHHHHhccCCEEEEccCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP-SAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.++++.|||.|.+|+.++..|...|+ +|.+++|+....+.... .+......+. +..+|+||+++|..
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g 186 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG 186 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence 46789999999999999999999998 79999998643221000 0111111222 46899999999974
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.018 Score=60.02 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=64.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC--CCCC-------cc--c---ccCceecCCHHHHhccCCEEEEc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE--GKGK-------VT--F---PSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~--~~~~-------~~--~---~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
..++|+|||.|.||..+|..+...|+ +|..+|+.. ...+ .. + ........+ .+.+++||+|+++
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia 85 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT 85 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence 46789999999999999999998899 999999973 1111 00 0 001111223 4678999999999
Q ss_pred cCCChh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 226 CAVTDE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 226 lPlT~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
...... +..++- .+.+....|++++|+++. .+|.-.
T Consensus 86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN--Pvd~~t 134 (315)
T 3tl2_A 86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN--PVDAMT 134 (315)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC--hHHHHH
Confidence 753221 112221 123444468999999984 455444
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.01 Score=61.43 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=65.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-cCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.|.+|.|+|.|.||...++.++.+|++|++.+++....+.....++.. ..+.+++....|+|+-++..... -..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~ 250 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD 250 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH
Confidence 688999999999999999999999999999998775544222222221 12334444468899888775321 245
Q ss_pred HHhccCCCcEEEEcCCCh
Q 006758 240 CLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~ 257 (632)
.+..++++..+|.+|-..
T Consensus 251 ~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 251 YLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp HHTTEEEEEEEEECCCCC
T ss_pred HHHHHhcCCEEEEECCCC
Confidence 667788888888887533
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0082 Score=62.45 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=47.9
Q ss_pred cEEEEEeCChhhH-HHHHHHhhC-CCEEE-EECCCCCCCCcccc---cCceecCCHHHHhcc--CCEEEEccCCCh
Q 006758 163 LVLGIVGRSASAR-ALATRSLSF-KMSVL-YFDVPEGKGKVTFP---SAARRMDTLNDLLAA--SDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~---~g~~~~~sL~eLL~~--ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+ ..+..++.. +++|. ++|++ ........ .+...+.++++++.. .|+|++++|...
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHT 77 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGG
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHH
Confidence 4799999999999 567767665 78875 66777 22111000 245567899999986 899999999644
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.22 Score=51.55 Aligned_cols=70 Identities=14% Similarity=0.004 Sum_probs=55.0
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
+.|.+|++||= +++..+++..+..||++|.+..|..-........|+....++++.++++|||.. +-..-
T Consensus 144 l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~q~ 216 (291)
T 3d6n_B 144 VKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRLQK 216 (291)
T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCCCT
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCccc
Confidence 78999999997 899999999999999999999986422211111244557899999999999999 66543
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.018 Score=58.06 Aligned_cols=69 Identities=16% Similarity=0.034 Sum_probs=46.8
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCc----c---------cccCceecCCHHHHhcc--CCEEEE
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKV----T---------FPSAARRMDTLNDLLAA--SDVISL 224 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~----~---------~~~g~~~~~sL~eLL~~--ADVV~l 224 (632)
.|++|.|.|. |.||+.+++.|...|++|+++++....... . +........++.+++.. .|+|+.
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 81 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN 81 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 5789999997 999999999999999999999987643210 0 00011112234566665 498888
Q ss_pred ccCCC
Q 006758 225 HCAVT 229 (632)
Q Consensus 225 ~lPlT 229 (632)
+....
T Consensus 82 ~A~~~ 86 (345)
T 2z1m_A 82 LAAQS 86 (345)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 77643
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0054 Score=64.09 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=62.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC---CCCCcccccCceecC--CH-HHHh---ccCCEEEEccCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE---GKGKVTFPSAARRMD--TL-NDLL---AASDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~---~~~~~~~~~g~~~~~--sL-~eLL---~~ADVV~l~lPlT 229 (632)
.+.|++|.|+|.|.||..+++.++.+|++|++.+++. ...+.....++..++ ++ +++. ...|+|+.++...
T Consensus 178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 257 (366)
T 2cdc_A 178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD 257 (366)
T ss_dssp SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence 3679999999999999999999999999999999875 322211111222110 11 1221 3579999888753
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
... + ...+..|+++..+|+++-
T Consensus 258 ~~~---~-~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 258 VNI---L-GNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp THH---H-HHHGGGEEEEEEEEECSC
T ss_pred HHH---H-HHHHHHHhcCCEEEEEec
Confidence 322 1 455677888888888875
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.036 Score=56.46 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred cEEEEEeCChhhHHHHHHHhh----CCCEEE-EECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGRSASARALATRSLS----FKMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka----fGm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~l 235 (632)
.+|||||+|.||+..++.+.. -+++++ ++|++.... ..++. +.++++++. +.|+|++++|.....
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~----~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~--- 79 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGS----LDEVR-QISLEDALRSQEIDVAYICSESSSHE--- 79 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCE----ETTEE-BCCHHHHHHCSSEEEEEECSCGGGHH---
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHH----HcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHH---
Confidence 479999999999999888765 367765 556653211 12333 479999997 689999999953322
Q ss_pred ccHHHHhccCCCc-EEEEcC-CChhhcHHHHHHHHHcCCcc
Q 006758 236 INAECLQHIKPGA-FLVNTG-SSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 236 I~~~~L~~MK~GA-vLINvg-RG~iVDe~AL~~AL~sg~I~ 274 (632)
+-....|+.|. +|+.-- --.+-+..+|+++.++..+.
T Consensus 80 --~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 118 (294)
T 1lc0_A 80 --DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV 118 (294)
T ss_dssp --HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred --HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence 22223344454 677631 22344556677777665443
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.028 Score=57.80 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=50.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCc-ccccCceecCCHHHHh----------ccCCEEEEccCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVL-YFDVPEGKGKV-TFPSAARRMDTLNDLL----------AASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~-~~dr~~~~~~~-~~~~g~~~~~sL~eLL----------~~ADVV~l~lPlT 229 (632)
.+|||||+ |.||...++.++..+.+|+ ++|++...... ....+...+.++++++ ++.|+|++++|..
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~ 83 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH 83 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence 57999999 7899999999998888754 56777644211 1112445678899988 6789999999964
Q ss_pred h
Q 006758 230 D 230 (632)
Q Consensus 230 ~ 230 (632)
-
T Consensus 84 ~ 84 (312)
T 3o9z_A 84 L 84 (312)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.054 Score=56.69 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=70.0
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~lP 227 (632)
+.|.+|++||= +++..+++..+..||++|.+..|..-.....+ ..| +....++++.++++|||..-.=
T Consensus 153 l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 153 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW 232 (315)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred cCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcce
Confidence 78999999997 89999999999999999999998653222111 112 3346889999999999998432
Q ss_pred C-------Chhh-----HhhccHHHHhccCCCcEEEEcC
Q 006758 228 V-------TDET-----IQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 228 l-------T~~T-----~~lI~~~~L~~MK~GAvLINvg 254 (632)
. .++- .--++.+.++.+||+++|..+.
T Consensus 233 ~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l 271 (315)
T 1pvv_A 233 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 271 (315)
T ss_dssp CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence 1 1111 1336888888888888888775
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.02 Score=59.28 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=61.5
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCc---c-------c--ccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKV---T-------F--PSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~---~-------~--~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
+|+|||.|.||..+|..+...|+ +|..+|......+. . . ...+....+. +.+++||+|+++.+...
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~ 79 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR 79 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence 58999999999999998876676 79999987532220 0 0 1112222455 67899999999977543
Q ss_pred h-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 231 E-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 231 ~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
. +..++- .+.+....|++++|+++- .+|.-+
T Consensus 80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~~t 123 (308)
T 2d4a_B 80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDAMT 123 (308)
T ss_dssp CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHHHH
Confidence 1 111121 122333358999999854 555444
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.11 Score=55.59 Aligned_cols=96 Identities=10% Similarity=0.035 Sum_probs=68.8
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCC--Cccc---------ccC--ceecCCHHHHhccCCEEEE
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKG--KVTF---------PSA--ARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~--~~~~---------~~g--~~~~~sL~eLL~~ADVV~l 224 (632)
+.|++|++||=| +++.+++..+..||++|.+..|..-.. ...+ ..| +....++++.++++|||..
T Consensus 178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt 257 (365)
T 4amu_A 178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT 257 (365)
T ss_dssp CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence 789999999987 788899999999999999999864222 1000 012 3345799999999999987
Q ss_pred cc--CCCh--h---h------HhhccHHHHhccCCCcEEEEcCC
Q 006758 225 HC--AVTD--E---T------IQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 225 ~l--PlT~--~---T------~~lI~~~~L~~MK~GAvLINvgR 255 (632)
-+ .... + - .--++.+.++.+|++++|.-+.=
T Consensus 258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP 301 (365)
T 4amu_A 258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLP 301 (365)
T ss_dssp CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSC
T ss_pred cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCC
Confidence 42 1121 1 0 12268888888899999888763
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.031 Score=52.67 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=57.9
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-cCCH----HHHhccCCEEEEccCCChhhHh--
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MDTL----NDLLAASDVISLHCAVTDETIQ-- 234 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-~~sL----~eLL~~ADVV~l~lPlT~~T~~-- 234 (632)
++|.|+| .|.||+.+++.|...|.+|.+++|+........ .++.. ..++ .+.+..+|+|+.+...+.....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~ 79 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKH 79 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCccccchH
Confidence 3689999 599999999999999999999999863321000 11110 0111 1678899999999876543211
Q ss_pred -hccHHHHhccCC--CcEEEEcCCCh
Q 006758 235 -IINAECLQHIKP--GAFLVNTGSSQ 257 (632)
Q Consensus 235 -lI~~~~L~~MK~--GAvLINvgRG~ 257 (632)
......+..|+. ...+|+++...
T Consensus 80 ~~~~~~l~~a~~~~~~~~~v~~SS~~ 105 (221)
T 3ew7_A 80 VTSLDHLISVLNGTVSPRLLVVGGAA 105 (221)
T ss_dssp HHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCceEEEEecce
Confidence 011234444443 35667766643
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0049 Score=63.56 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=48.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC---CEE-EEECCCCCCCCcc-cccCc-eecCCHHHHhc--cCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFK---MSV-LYFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG---m~V-~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+..++.++..+ ++| .++|++....... ...+. ..+.++++++. +.|+|++++|...
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 78 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQ 78 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence 47999999999999999988653 454 4568775332211 01122 34689999998 5899999999643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0078 Score=62.69 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=64.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee---c--C-CHHH-HhccCCEEEEccCCChhhH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M--D-TLND-LLAASDVISLHCAVTDETI 233 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~---~--~-sL~e-LL~~ADVV~l~lPlT~~T~ 233 (632)
.|.+|.|+|.|.||..+++.++.+|++|++.+++....+.....++.. + . ++.+ +....|+|+.+++.++ .
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~ 256 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D 256 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence 588999999999999999999999999999998765443221222221 1 1 2222 2246899999987531 0
Q ss_pred hhccHHHHhccCCCcEEEEcCCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG 256 (632)
..+ ...+..|+++..+|.++..
T Consensus 257 ~~~-~~~~~~l~~~G~iv~~g~~ 278 (360)
T 1piw_A 257 IDF-NIMPKAMKVGGRIVSISIP 278 (360)
T ss_dssp CCT-TTGGGGEEEEEEEEECCCC
T ss_pred HHH-HHHHHHhcCCCEEEEecCC
Confidence 112 3456788999999998763
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.025 Score=57.42 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=50.8
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC---cccc------cCceecCCHHHHhc--cCCEEEEc
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK---VTFP------SAARRMDTLNDLLA--ASDVISLH 225 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~---~~~~------~g~~~~~sL~eLL~--~ADVV~l~ 225 (632)
..+.|++|.|.|. |.||+.+++.|...|++|++++|...... .... .......++.+++. .+|+|+.+
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~ 95 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS 95 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence 4578999999997 99999999999999999999998643221 0000 01111223566777 88999888
Q ss_pred cCCC
Q 006758 226 CAVT 229 (632)
Q Consensus 226 lPlT 229 (632)
....
T Consensus 96 A~~~ 99 (330)
T 2pzm_A 96 AAAY 99 (330)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7643
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.018 Score=59.75 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=61.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC-------cc--cccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK-------VT--FPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~-------~~--~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++|+|||.|.+|..+|..+...+ -+|..+|......+ .. +........+-.+.+++||+|+++.+....
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~ 80 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR 80 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence 47999999999999999988665 48999998752211 00 000111111236779999999999875432
Q ss_pred -----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 232 -----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 232 -----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
|..++- .+.+....|.+++||++ ..+|.-.
T Consensus 81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t 123 (310)
T 2xxj_A 81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT--NPVDVMT 123 (310)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHHH
T ss_pred CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence 111211 12333347899999984 4555544
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.032 Score=57.55 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=49.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEE-EECCCCCCCCc-ccccCceecCCHHHHh-----------ccCCEEEEccCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVL-YFDVPEGKGKV-TFPSAARRMDTLNDLL-----------AASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~-~~dr~~~~~~~-~~~~g~~~~~sL~eLL-----------~~ADVV~l~lPl 228 (632)
.+|||||+ |.||...++.++..+.+|+ ++|++...... ....+...+.++++++ ++.|+|+++.|.
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~ 83 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN 83 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence 57999999 7899999999998888754 55777543211 1112445577899987 568999999996
Q ss_pred Ch
Q 006758 229 TD 230 (632)
Q Consensus 229 T~ 230 (632)
.-
T Consensus 84 ~~ 85 (318)
T 3oa2_A 84 YL 85 (318)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.40 E-value=0.021 Score=60.10 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=65.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccccC--ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
...++|+|||.|.||..+|..+...|. +|..+|......+ ..+... .....+.+ .+++||+|+++.
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~a 95 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITA 95 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEcc
Confidence 467899999999999999998887776 9999998753111 011111 12234555 589999999987
Q ss_pred CCChh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 227 AVTDE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 227 PlT~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
..... +..++- .+.+....|++++|+++. .+|.-+
T Consensus 96 G~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN--Pvdi~t 143 (331)
T 4aj2_A 96 GARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN--PVDILT 143 (331)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC--hHHHHH
Confidence 54221 222221 124445578999999985 455433
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.015 Score=57.44 Aligned_cols=66 Identities=21% Similarity=0.130 Sum_probs=45.7
Q ss_pred CcEEEEEeCChhhHHHHHH--HhhCCCEEEE-ECCCCCCCCccc-ccCceecCCHHHHhc-cCCEEEEccCC
Q 006758 162 GLVLGIVGRSASARALATR--SLSFKMSVLY-FDVPEGKGKVTF-PSAARRMDTLNDLLA-ASDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~--LkafGm~V~~-~dr~~~~~~~~~-~~g~~~~~sL~eLL~-~ADVV~l~lPl 228 (632)
..+|+|||.|.+|+.+|+. ... |++|.+ +|.++....... ...+...++++++++ +.|+|++|+|.
T Consensus 80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps 150 (211)
T 2dt5_A 80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR 150 (211)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence 3679999999999999985 334 887654 576654322111 112334678899887 48999999995
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.028 Score=58.72 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=65.4
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----ccC--ceecCCHHHHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+.|.+|++||= |++..+++..+..||++|.+..|..-.....+ ..| .....++++.++++|||..-.=-.
T Consensus 153 l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~ 232 (308)
T 1ml4_A 153 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK 232 (308)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred CCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccc
Confidence 78999999998 48999999999999999999998643222111 012 234578999999999998854211
Q ss_pred ------hhhH-----hhccHHHHhccCCCcEEEEcC
Q 006758 230 ------DETI-----QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 230 ------~~T~-----~lI~~~~L~~MK~GAvLINvg 254 (632)
.+-. --++.+.++.+||+++|..+.
T Consensus 233 er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 268 (308)
T 1ml4_A 233 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL 268 (308)
T ss_dssp GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred cccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence 1111 124666666667777666654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.044 Score=58.00 Aligned_cols=96 Identities=15% Similarity=0.230 Sum_probs=61.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC------CEEEEECCCCCCCCc---c---cc----cCceecCCHHHHhccCCEEEEc
Q 006758 163 LVLGIVG-RSASARALATRSLSFK------MSVLYFDVPEGKGKV---T---FP----SAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG------m~V~~~dr~~~~~~~---~---~~----~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+|+|+| .|.+|+.+.+.|...+ ++|..+.+.....+. . +. ...... +. +.+..+|+|++|
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~DvVf~a 87 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPT-EA-AVLGGHDAVFLA 87 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEEC-CH-HHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccC-CH-HHhcCCCEEEEC
Confidence 6899999 9999999999998776 577777532222110 0 10 011111 33 345689999999
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHH
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~ 266 (632)
+|... ..+....++.|+.+|+.+..--.+..+.++
T Consensus 88 lg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~~~ 122 (352)
T 2nqt_A 88 LPHGH------SAVLAQQLSPETLIIDCGADFRLTDAAVWE 122 (352)
T ss_dssp CTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHHHH
T ss_pred CCCcc------hHHHHHHHhCCCEEEEECCCccCCcchhhh
Confidence 99643 333334446789999998766555545443
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.022 Score=56.72 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=34.2
Q ss_pred cccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+++..
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~ 43 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 43 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468999999997 69999999999999999999998763
|
| >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.035 Score=59.23 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=67.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
--++.|+|.|.+|+++|+.++.+|++|.++|+...... .+-++.+|-|+...| .+.+
T Consensus 199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~-------------~~~fp~a~~v~~~~p----------~~~~ 255 (362)
T 3on5_A 199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE-------------KHFFPDADEIIVDFP----------ADFL 255 (362)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC-------------GGGCTTCSEEEESCH----------HHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc-------------cccCCCceEEecCCH----------HHHH
Confidence 34699999999999999999999999999998753211 112355676655444 1222
Q ss_pred hc--cCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEE
Q 006758 242 QH--IKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCA 277 (632)
Q Consensus 242 ~~--MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAa 277 (632)
.. +.+++++|=+.++.-.|..+|..+|+. ..+..+
T Consensus 256 ~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG 292 (362)
T 3on5_A 256 RKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIG 292 (362)
T ss_dssp HHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEE
T ss_pred hhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEE
Confidence 33 668889999999999999999999876 344333
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0081 Score=64.79 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=48.9
Q ss_pred cEEEEEeC----ChhhHHHHHHHhhC--CCEE-EEECCCCCCCCccc-ccCc---eecCCHHHHhc--cCCEEEEccCC
Q 006758 163 LVLGIVGR----SASARALATRSLSF--KMSV-LYFDVPEGKGKVTF-PSAA---RRMDTLNDLLA--ASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGl----G~IG~~vA~~Lkaf--Gm~V-~~~dr~~~~~~~~~-~~g~---~~~~sL~eLL~--~ADVV~l~lPl 228 (632)
.+|||||+ |.||...++.++.. +++| .++|++....+... ..+. ..+.++++++. +.|+|++++|.
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 99 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV 99 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence 57999999 99999999999887 7886 56787754322100 1122 35689999997 58999999995
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.16 Score=54.16 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=70.2
Q ss_pred ccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|.+|++||=| +++.+++..+..||++|.+..|..-.....+ ..| +....++++.++++|||..-.
T Consensus 174 l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~ 253 (359)
T 2w37_A 174 LQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDV 253 (359)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred cCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcc
Confidence 789999999986 9999999999999999999998643222111 112 344689999999999998844
Q ss_pred CC--C----hh-----hHhhccHHHHhccC---CCcEEEEcCC
Q 006758 227 AV--T----DE-----TIQIINAECLQHIK---PGAFLVNTGS 255 (632)
Q Consensus 227 Pl--T----~~-----T~~lI~~~~L~~MK---~GAvLINvgR 255 (632)
=. . .+ ..--|+.+.++.+| ++++|.-+.=
T Consensus 254 w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP 296 (359)
T 2w37_A 254 WVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP 296 (359)
T ss_dssp SCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC
T ss_pred cccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC
Confidence 21 0 11 11235888888888 8888888764
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.049 Score=57.68 Aligned_cols=104 Identities=9% Similarity=0.093 Sum_probs=64.3
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc------cCc----eecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP------SAA----RRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~------~g~----~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
..+|||+| +|.||+.+++.|.... ++|.++........ .+. .+. ..+.+ ++.+..+|+|++|+|..
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~-~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~ 93 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQ-SMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG 93 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTS-CHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCC-CHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence 46899999 9999999999998764 58887765432221 111 010 01122 45667899999999953
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCCChhhc-HHHHHHHHHcCCc
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGSSQLLD-DCAVKQLLIDGTL 273 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgRG~iVD-e~AL~~AL~sg~I 273 (632)
.. .+.....+.|+.+|+.+.---.+ .+...+.+...+.
T Consensus 94 ~s------~~~a~~~~aG~~VId~sa~~R~~~~~~y~~~y~~~~~ 132 (359)
T 1xyg_A 94 TT------QEIIKELPTALKIVDLSADFRLRNIAEYEEWYGQPHK 132 (359)
T ss_dssp TH------HHHHHTSCTTCEEEECSSTTTCSCHHHHHHHHSSCCS
T ss_pred hH------HHHHHHHhCCCEEEECCccccCCchhhhhhhhcCCcC
Confidence 32 22222227799999998644344 3445555554443
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.028 Score=54.14 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=46.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc----cCCEEEEccCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA----ASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~----~ADVV~l~lPlT 229 (632)
++|.|.|. |.||+.+++.|...|++|++.+++.......+........++++++. ..|+|+.+.-..
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~ 73 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVG 73 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCC
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCCC
Confidence 46888986 99999999999999999999998764332111111122234555664 789999887544
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.039 Score=57.18 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=63.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCC--CEEEEECCCCCCCC-----c-ccccCcee---cCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGR-SASARALATRSLSFK--MSVLYFDVPEGKGK-----V-TFPSAARR---MDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafG--m~V~~~dr~~~~~~-----~-~~~~g~~~---~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
++|+|||. |.+|..++..|...| -+|..+|+...... . ..+..... ..++++.+++||+|+++.+...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 37999998 999999999998777 58999998752111 0 01101111 1368888999999999986432
Q ss_pred h---hH--------hhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 231 E---TI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 231 ~---T~--------~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
. ++ .++- .+.+....|++++|++ ...+|.-.
T Consensus 81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~ 124 (314)
T 1mld_A 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI 124 (314)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence 1 10 1110 1223334588999997 44676655
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.033 Score=58.13 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=60.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee---c----CCHHHHhc-----cCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~ADVV~l~lP 227 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....++.. + .++.+.+. ..|+|+.++.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 68899999999999999999999999 8999998764433111222211 1 12333322 4788888876
Q ss_pred CChhhHhhccHHHHhccCCC-cEEEEcCC
Q 006758 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~G-AvLINvgR 255 (632)
..+ + + ...+..++++ ..+|.++-
T Consensus 272 ~~~-~---~-~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 272 NVG-V---M-RNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp CHH-H---H-HHHHHTBCTTTCEEEECSC
T ss_pred CHH-H---H-HHHHHHhhcCCcEEEEEcC
Confidence 422 1 1 3566778887 78887764
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.049 Score=57.50 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=71.3
Q ss_pred cccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+.|.+|++||=| +++.+++..+..||++|.+..|..-.....+ ..| +....++++.++++|||..-
T Consensus 152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd 231 (335)
T 1dxh_A 152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 231 (335)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence 3789999999996 9999999999999999999998653222111 112 33468999999999999884
Q ss_pred cCC--------Chh-----hHhhccHHHHhcc-CCCcEEEEcCC
Q 006758 226 CAV--------TDE-----TIQIINAECLQHI-KPGAFLVNTGS 255 (632)
Q Consensus 226 lPl--------T~~-----T~~lI~~~~L~~M-K~GAvLINvgR 255 (632)
.=. ..+ ..--++.+.++.+ ||+++|.-+.=
T Consensus 232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP 275 (335)
T 1dxh_A 232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP 275 (335)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence 331 111 1124688899989 89999888754
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.014 Score=63.93 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=65.6
Q ss_pred CcEEEEEeC----ChhhHHHHHHHhhC--CCEEE-EECCCCCCCCccc-ccCc---eecCCHHHHhc--cCCEEEEccCC
Q 006758 162 GLVLGIVGR----SASARALATRSLSF--KMSVL-YFDVPEGKGKVTF-PSAA---RRMDTLNDLLA--ASDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGl----G~IG~~vA~~Lkaf--Gm~V~-~~dr~~~~~~~~~-~~g~---~~~~sL~eLL~--~ADVV~l~lPl 228 (632)
-.+|||||+ |.||...++.++.. +++|+ ++|++....+... ..+. ..+.++++++. +.|+|++++|.
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~ 118 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV 118 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence 357999999 99999999999876 78865 6787753322100 1122 35789999996 68999999995
Q ss_pred ChhhHhhccHHHHhccCCC-------cEEEEcC-CChhhcHHHHHHHHHcCC
Q 006758 229 TDETIQIINAECLQHIKPG-------AFLVNTG-SSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~G-------AvLINvg-RG~iVDe~AL~~AL~sg~ 272 (632)
.... +-.+..|+.| .+|+.-= --.+-+..+|+++.++..
T Consensus 119 ~~H~-----~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g 165 (479)
T 2nvw_A 119 PEHY-----EVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA 165 (479)
T ss_dssp HHHH-----HHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred HHHH-----HHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcC
Confidence 3221 1122334344 4666641 122334455666655433
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.038 Score=56.17 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=49.9
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc------------------cccCceecCCHHHHhccCC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT------------------FPSAARRMDTLNDLLAASD 220 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~------------------~~~g~~~~~sL~eLL~~AD 220 (632)
+.+++|.|.| .|-||+.+++.|...|.+|++++|........ .........++.+++..+|
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 102 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD 102 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence 5789999999 59999999999999999999999875432100 0001112234667788899
Q ss_pred EEEEccCC
Q 006758 221 VISLHCAV 228 (632)
Q Consensus 221 VV~l~lPl 228 (632)
+|+.+...
T Consensus 103 ~Vih~A~~ 110 (351)
T 3ruf_A 103 HVLHQAAL 110 (351)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 98887764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.01 Score=62.33 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=61.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee---cCC---HHHHhccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---MDT---LNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~---~~s---L~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.|.+|.|+|.|.||..+++.++.+|++|++.+++....+.....++.. ..+ ++++....|+|+.++.....
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~--- 270 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN--- 270 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence 588999999999999999999999999999998764433111122211 111 22333467888888764221
Q ss_pred hccHHHHhccCCCcEEEEcCCC
Q 006758 235 IINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG 256 (632)
+ ...+..|+++..+|.+|..
T Consensus 271 -~-~~~~~~l~~~G~iv~~G~~ 290 (369)
T 1uuf_A 271 -L-DDFTTLLKRDGTMTLVGAP 290 (369)
T ss_dssp -H-HHHHTTEEEEEEEEECCCC
T ss_pred -H-HHHHHHhccCCEEEEeccC
Confidence 1 3456778888888888753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.019 Score=56.93 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=48.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---ccCceecCCHHHHhcc-CCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF---PSAARRMDTLNDLLAA-SDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---~~g~~~~~sL~eLL~~-ADVV~l~lPl 228 (632)
.+++|.|.|.|.||+.+++.|...|.+|++++|+........ ........++.+++.. +|+|+.+...
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~ 73 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVAA 73 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCCC
Confidence 357899999999999999999999999999998864322111 1111223455667776 9999887653
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.051 Score=51.45 Aligned_cols=94 Identities=11% Similarity=0.113 Sum_probs=57.4
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-cCCH----HHHhccCCEEEEccCCC--hh--h
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-MDTL----NDLLAASDVISLHCAVT--DE--T 232 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-~~sL----~eLL~~ADVV~l~lPlT--~~--T 232 (632)
++|.|+|. |.||+.+++.|...|.+|++++|+..........++.. ..++ .+.+..+|+|+.+.... +. .
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~ 80 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY 80 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence 36899997 99999999999999999999998753221101111110 0111 16788999999988663 10 0
Q ss_pred Hhh-ccHHHHhccC-CCcEEEEcCCC
Q 006758 233 IQI-INAECLQHIK-PGAFLVNTGSS 256 (632)
Q Consensus 233 ~~l-I~~~~L~~MK-~GAvLINvgRG 256 (632)
.++ .....+..|+ .|..||+++..
T Consensus 81 ~n~~~~~~l~~a~~~~~~~~v~~SS~ 106 (224)
T 3h2s_A 81 LHLDFATHLVSLLRNSDTLAVFILGS 106 (224)
T ss_dssp HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 011 1233445553 34667777664
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.068 Score=54.51 Aligned_cols=107 Identities=10% Similarity=0.141 Sum_probs=76.3
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh---------
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--------- 230 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~--------- 230 (632)
+.|++|.|+|.......+++.|...|.+|.++.-.... ....++....++.+.++++|+|++..|...
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~---~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~ 81 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLD---HGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF 81 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSS---CCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc---cccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence 57889999999999999999999999999887432111 112234445567888899999987554321
Q ss_pred -hhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 231 -ETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 231 -~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.+...++++.+..++++.+|+ ++- |..++++++.+..|.
T Consensus 82 a~~~~~~~~~~l~~~~~l~~i~-~g~----~~~d~~~~~~~~gi~ 121 (300)
T 2rir_A 82 SNEEVVLKQDHLDRTPAHCVIF-SGI----SNAYLENIAAQAKRK 121 (300)
T ss_dssp CSSCEECCHHHHHTSCTTCEEE-ESS----CCHHHHHHHHHTTCC
T ss_pred ccCCccchHHHHhhcCCCCEEE-Eec----CCHHHHHHHHHCCCE
Confidence 223347889999999998888 432 667766777776665
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.1 Score=55.18 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=67.7
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~lP 227 (632)
+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+ ..| +....++++.++++|||.+-.=
T Consensus 177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW 256 (340)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence 78999999996 56778888888899999999998653222110 112 3446789999999999987542
Q ss_pred CC------hhh-----HhhccHHHHhccCCCcEEEEcC
Q 006758 228 VT------DET-----IQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 228 lT------~~T-----~~lI~~~~L~~MK~GAvLINvg 254 (632)
.. ++. .--|+.+.++.+|++++|.-+.
T Consensus 257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL 294 (340)
T 4ep1_A 257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL 294 (340)
T ss_dssp ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence 21 010 1236888888889999988876
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.061 Score=59.25 Aligned_cols=97 Identities=12% Similarity=0.231 Sum_probs=70.3
Q ss_pred cccCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCC
Q 006758 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
.+.|++|+|+|+- .-...|++.|...|++|.+|||.... ++ ......++++.+..+|+|+++++.
T Consensus 350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~----~~-~~~~~~~~~~~~~~ad~vvi~t~~ 424 (478)
T 3g79_A 350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN----YP-GVEISDNLEEVVRNADAIVVLAGH 424 (478)
T ss_dssp CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC----BT-TBCEESCHHHHHTTCSEEEECSCC
T ss_pred CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc----cc-CcceecCHHHHHhcCCEEEEecCC
Confidence 4689999999974 34689999999999999999998752 11 122346899999999999999876
Q ss_pred ChhhHhhccHH-HHhccC-CCcEEEEcCCChhhcHHHH
Q 006758 229 TDETIQIINAE-CLQHIK-PGAFLVNTGSSQLLDDCAV 264 (632)
Q Consensus 229 T~~T~~lI~~~-~L~~MK-~GAvLINvgRG~iVDe~AL 264 (632)
++-+. ++-+ ....|+ ++.+||++ |+ +.|.+.+
T Consensus 425 -~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~ 458 (478)
T 3g79_A 425 -SAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF 458 (478)
T ss_dssp -HHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred -HHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 33333 3444 445677 47899994 64 4565544
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.15 E-value=0.033 Score=58.12 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=58.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee---c----CCHHHHhc-----cCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~ADVV~l~lP 227 (632)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++....+.....++.. + .++.+.+. ..|+|+.++.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence 68899999999999999999999999 8999998764432111122211 1 12333222 3677777776
Q ss_pred CChhhHhhccHHHHhccCCC-cEEEEcCC
Q 006758 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~G-AvLINvgR 255 (632)
..+ + + ...+..++++ ..+|.+|-
T Consensus 271 ~~~-~---~-~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 271 RLD-T---M-VTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp CHH-H---H-HHHHHHBCTTTCEEEECSC
T ss_pred CHH-H---H-HHHHHHhhcCCcEEEEecc
Confidence 311 1 1 3456667777 77777653
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.11 Score=54.70 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=67.1
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
+.|.+|+|||= +++..+++..+..+|++|.+..|..-.....+ ...+....++++.++++|||..-.=
T Consensus 155 l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 155 LAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVW 234 (323)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEece
Confidence 68999999996 57788888888889999999998653222110 1123456799999999999987542
Q ss_pred CCh-------h-----hHhhccHHHHhccCCCcEEEEcC
Q 006758 228 VTD-------E-----TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 228 lT~-------~-----T~~lI~~~~L~~MK~GAvLINvg 254 (632)
-.. + ..--++.+.++.+|++++|.-+.
T Consensus 235 qs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl 273 (323)
T 3gd5_A 235 TSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL 273 (323)
T ss_dssp C---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred ecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence 111 0 01136888888888888888765
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.032 Score=58.05 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=61.9
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCC--CEEEEECCCCCCCC-----c-ccccCcee---cCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVG-RSASARALATRSLSFK--MSVLYFDVPEGKGK-----V-TFPSAARR---MDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafG--m~V~~~dr~~~~~~-----~-~~~~g~~~---~~sL~eLL~~ADVV~l~lPlT 229 (632)
.++|+|+| .|.+|..++..|...| .+|..+|....... . ........ ..++.+.+++||+|+++.+..
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~ 87 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence 46899999 8999999999998777 68999997653110 0 01101111 225678899999999998743
Q ss_pred hh---------------hHhhccHHHHhccCCCcEEEEcCCChhhcHH
Q 006758 230 DE---------------TIQIINAECLQHIKPGAFLVNTGSSQLLDDC 262 (632)
Q Consensus 230 ~~---------------T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~ 262 (632)
.. ++.++ +.+....+.+++++++ ..+|..
T Consensus 88 ~~~g~~r~dl~~~N~~~~~~i~--~~i~~~~p~~~viv~S--NPv~~~ 131 (326)
T 1smk_A 88 RKPGMTRDDLFKINAGIVKTLC--EGIAKCCPRAIVNLIS--NPVNST 131 (326)
T ss_dssp CCSSCCCSHHHHHHHHHHHHHH--HHHHHHCTTSEEEECC--SSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH--HHHHhhCCCeEEEEEC--CchHHH
Confidence 21 11111 2223335778888864 456653
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.073 Score=57.90 Aligned_cols=86 Identities=9% Similarity=0.098 Sum_probs=65.1
Q ss_pred cccCcEEEEEeCC----------hhhHHHHHHHhhC-CCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccC
Q 006758 159 RCRGLVLGIVGRS----------ASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+.|++|+|+|+. .-...|++.|... |++|.+|||..... ....++++.+..+|+|+++.+
T Consensus 312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSC
T ss_pred hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecC
Confidence 3689999999974 3478999999999 99999999987542 124688999999999999988
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
.. +-+. ++-+.+..|+ +.+||++ |+
T Consensus 384 ~~-~f~~-~d~~~~~~~~-~~~i~D~-r~ 408 (431)
T 3ojo_A 384 HS-EFKN-LSDSHFDKMK-HKVIFDT-KN 408 (431)
T ss_dssp CG-GGTS-CCGGGGTTCS-SCEEEES-SC
T ss_pred CH-HHhc-cCHHHHHhCC-CCEEEEC-CC
Confidence 63 3222 3444556676 6788885 54
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=95.09 E-value=0.049 Score=56.91 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=64.7
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhC-CCEEEEECCCCCCCCccc-----ccC--ceecCCHHHHhccCCEEEEccCC
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSF-KMSVLYFDVPEGKGKVTF-----PSA--ARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~-----~~g--~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
+.|.+|++||= |++..+++..+..| |++|.+..|..-.....+ ..| .....++++.++++|||..-.=-
T Consensus 152 l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (310)
T 3csu_A 152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 231 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC--
T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence 78999999998 59999999999999 999999998653222111 012 23457899999999999886421
Q ss_pred Ch----hh------HhhccHHHHhccCCCcEEEEcC
Q 006758 229 TD----ET------IQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 229 T~----~T------~~lI~~~~L~~MK~GAvLINvg 254 (632)
.+ +. .--++.+.++.+||+++|..+.
T Consensus 232 ~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 267 (310)
T 3csu_A 232 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 267 (310)
T ss_dssp ---------------CCBCGGGGTTCCTTCEEECCS
T ss_pred ccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence 11 00 1224666666677777766654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.029 Score=56.85 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=35.8
Q ss_pred ccccccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 156 GMRRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 156 ~~~~L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+..+.|+++.|.|.+ .||+.+|+.|...|++|++.+++.
T Consensus 24 ~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~ 66 (296)
T 3k31_A 24 TGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE 66 (296)
T ss_dssp CCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred chhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence 3456899999999986 899999999999999999999875
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.04 Score=56.58 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=50.2
Q ss_pred ccccccCcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccc-cCc-------e-ecCCHHHHhccCCEEEE
Q 006758 156 GMRRCRGLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVTFP-SAA-------R-RMDTLNDLLAASDVISL 224 (632)
Q Consensus 156 ~~~~L~GktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~-~g~-------~-~~~sL~eLL~~ADVV~l 224 (632)
++..+.+++|.|.| .|.||+.+++.|... |++|+++++.......... .++ . ....+.+++..+|+|+.
T Consensus 18 ~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 18 GPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp -----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred CCcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence 44567889999999 699999999999987 9999999987644321111 111 1 12345677889999998
Q ss_pred ccCCC
Q 006758 225 HCAVT 229 (632)
Q Consensus 225 ~lPlT 229 (632)
+...+
T Consensus 98 ~A~~~ 102 (372)
T 3slg_A 98 LVAIA 102 (372)
T ss_dssp CBCCC
T ss_pred cCccc
Confidence 76543
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=60.42 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=47.4
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcc-cccCc-eecCCHHHHhcc--CCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--ADVV~l~lPlT~ 230 (632)
.+|||||+|.||+. ++..++.. +++|. ++|++....+.. ...++ ..+.+++++|+. .|+|++++|..-
T Consensus 24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~ 98 (350)
T 4had_A 24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQ 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGG
T ss_pred cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCch
Confidence 47999999999985 56667665 78876 568875432211 11122 356899999965 799999999643
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.064 Score=56.46 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=61.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccc------cC--ceecCCHHHHhccCCEEEEccCCChhh
Q 006758 163 LVLGIVG-RSASARALATRSLSFK-MSVLYFDVPEGKGKVTFP------SA--ARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~------~g--~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.+|||+| .|.||+.+.+.|.... ++|.++........ .+. .+ ...+.++++ +..+|+|++|+|....
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~-~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s- 81 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGE-PVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF- 81 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTS-BGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCc-hhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-
Confidence 5799999 8999999999998664 58777655432222 111 00 111234444 5789999999997543
Q ss_pred HhhccHHHHhccCCCcEEEEcCCChhh-cHHHHHHHHH
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLI 269 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~iV-De~AL~~AL~ 269 (632)
..+. . ..++.|+.+|+.+----. |.+...+...
T Consensus 82 ~~~a-~---~~~~aG~~VId~Sa~~r~~~~~~y~~~y~ 115 (345)
T 2ozp_A 82 AREF-D---RYSALAPVLVDLSADFRLKDPELYRRYYG 115 (345)
T ss_dssp HHTH-H---HHHTTCSEEEECSSTTSCSCHHHHHHHHC
T ss_pred HHHH-H---HHHHCCCEEEEcCccccCCChHHHHhhhc
Confidence 2221 1 224678999998864333 3444555554
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.04 Score=60.19 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=67.0
Q ss_pred CcEEEEEeCChh-hHHHHHHHhh----C-CCEEEEECCCC--CCCC------------cccccCceecCCHHHHhccCCE
Q 006758 162 GLVLGIVGRSAS-ARALATRSLS----F-KMSVLYFDVPE--GKGK------------VTFPSAARRMDTLNDLLAASDV 221 (632)
Q Consensus 162 GktVGIIGlG~I-G~~vA~~Lka----f-Gm~V~~~dr~~--~~~~------------~~~~~g~~~~~sL~eLL~~ADV 221 (632)
..+|+|||.|.. |..++..|.. + +-+|..||+.. ...+ ...+..+....++.+.+++||+
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~ 86 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF 86 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence 468999999999 7777665544 3 56899999976 3211 0111122334678899999999
Q ss_pred EEEccCCChh---hH----------------------------hhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 222 ISLHCAVTDE---TI----------------------------QIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 222 V~l~lPlT~~---T~----------------------------~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
|++++|.... ++ .++- .+.+....|+|+|||++---=+-..++.+.
T Consensus 87 VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~ 165 (450)
T 1s6y_A 87 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY 165 (450)
T ss_dssp EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred EEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Confidence 9999996331 11 1110 134455568999999987543434444443
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.041 Score=56.27 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=31.0
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..++|.|+|. |.||+.+++.|...|.+|++++|..
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4678999998 9999999999999999999999876
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.047 Score=57.58 Aligned_cols=97 Identities=9% Similarity=0.081 Sum_probs=71.2
Q ss_pred cccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+.|.+|++||=| +++.+++..+..||++|.+..|..-.....+ ..| +....++++.++++|||..-
T Consensus 152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd 231 (333)
T 1duv_G 152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD 231 (333)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence 3789999999986 9999999999999999999998653222111 122 33468999999999999984
Q ss_pred cCCC--------hh-----hHhhccHHHHhcc-CCCcEEEEcCC
Q 006758 226 CAVT--------DE-----TIQIINAECLQHI-KPGAFLVNTGS 255 (632)
Q Consensus 226 lPlT--------~~-----T~~lI~~~~L~~M-K~GAvLINvgR 255 (632)
.=.. .+ ..--|+.+.++.+ ||+++|.-+.=
T Consensus 232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP 275 (333)
T 1duv_G 232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLP 275 (333)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSC
T ss_pred CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCC
Confidence 3310 11 1124688899999 99999988764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.037 Score=57.80 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=60.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee---c----CCHHHHhc-----cCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~ADVV~l~lP 227 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....++.. + .++.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 8999998764433212222211 1 12333222 4788888876
Q ss_pred CChhhHhhccHHHHhccCCC-cEEEEcCC
Q 006758 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~G-AvLINvgR 255 (632)
. +.+ + ...+..++++ ..+|.+|-
T Consensus 271 ~-~~~---~-~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 271 R-IET---M-MNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp C-HHH---H-HHHHHTBCTTTCEEEECCC
T ss_pred C-HHH---H-HHHHHHHhcCCCEEEEEcc
Confidence 4 221 1 3566778887 77887764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.025 Score=59.59 Aligned_cols=89 Identities=9% Similarity=0.064 Sum_probs=53.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECC-CCCCCCcc---cccC-----------c-eecCCHHHHhc-cCCEEE
Q 006758 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDV-PEGKGKVT---FPSA-----------A-RRMDTLNDLLA-ASDVIS 223 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr-~~~~~~~~---~~~g-----------~-~~~~sL~eLL~-~ADVV~ 223 (632)
.+|||+| +|.||+.+++.|... +++|.++.+ .....+.. ++.. . ....++++++. .+|+|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~ 88 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF 88 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence 5799999 999999999999876 468877642 21121100 0100 0 01124556656 899999
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
+|+|... +..+. . ..++.|+.+|+.+.-
T Consensus 89 ~atp~~~-~~~~a-~---~~~~aG~~VId~s~~ 116 (354)
T 1ys4_A 89 SALPSDL-AKKFE-P---EFAKEGKLIFSNASA 116 (354)
T ss_dssp ECCCHHH-HHHHH-H---HHHHTTCEEEECCST
T ss_pred ECCCchH-HHHHH-H---HHHHCCCEEEECCch
Confidence 9998532 22221 1 223568888888753
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.016 Score=62.41 Aligned_cols=104 Identities=8% Similarity=0.072 Sum_probs=63.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC-CCEE-EEECCCCCCCCcc---c-ccC---ceecC----CHHHHhc--cCCEEEEcc
Q 006758 162 GLVLGIVGRSASARALATRSLSF-KMSV-LYFDVPEGKGKVT---F-PSA---ARRMD----TLNDLLA--ASDVISLHC 226 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf-Gm~V-~~~dr~~~~~~~~---~-~~g---~~~~~----sL~eLL~--~ADVV~l~l 226 (632)
-.+|||||+|.||+..++.+... |++| .++|++....... + ..+ ...+. +++++|. +.|+|++++
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t 99 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS 99 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence 35799999999999999988875 7776 4678775432210 0 012 34456 8999997 589999999
Q ss_pred CCChhhHhhccHHHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHc
Q 006758 227 AVTDETIQIINAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLID 270 (632)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~s 270 (632)
|..... +-.+..|+.|. +++.- ---.+-+..+|+++.++
T Consensus 100 p~~~h~-----~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 100 PWEWHH-----EHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp CGGGHH-----HHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred CcHHHH-----HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 953322 12223344454 44432 11123344456665554
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.032 Score=57.78 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=48.0
Q ss_pred cCcEEEEEeCChhhH-HHHHHHhhC-CCEEE-EECCCCCCCCcccccCceecCCHHHHhcc---CCEEEEccCC
Q 006758 161 RGLVLGIVGRSASAR-ALATRSLSF-KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAA---SDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~-~vA~~Lkaf-Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~---ADVV~l~lPl 228 (632)
+-.+|||||+|.||+ ..+..++.. +++|. ++|++... .++..+.++++++.. .|+|++++|.
T Consensus 24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~ 91 (330)
T 4ew6_A 24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPP 91 (330)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence 346899999999998 688888876 77765 56776432 244557899999876 8999999994
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.022 Score=58.89 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=46.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhC--------CCEEE-EECCCCCCCCccc-ccCc-eecCCHHHHhcc--CCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSF--------KMSVL-YFDVPEGKGKVTF-PSAA-RRMDTLNDLLAA--SDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lkaf--------Gm~V~-~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~~--ADVV~l~lP 227 (632)
+-.+|||||+|.||+.-++.++.+ +++|+ ++|++....+... ..+. ..+.+++++|++ .|+|++++|
T Consensus 24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP 103 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTP 103 (393)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSC
T ss_pred CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCC
Confidence 345799999999999877666542 56655 5688765443111 1122 356899999974 699999999
Q ss_pred CCh
Q 006758 228 VTD 230 (632)
Q Consensus 228 lT~ 230 (632)
..-
T Consensus 104 ~~~ 106 (393)
T 4fb5_A 104 NQF 106 (393)
T ss_dssp GGG
T ss_pred hHH
Confidence 643
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.014 Score=60.33 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=60.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee---c--CCHHHH----hccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M--DTLNDL----LAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~---~--~sL~eL----L~~ADVV~l~lPlT~~ 231 (632)
.|.+|.|+|.|.||..+++.++.+|++|++.+++....+.....++.. + .++.+. ....|+|+.++.....
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~ 243 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA 243 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence 588999999999999999999999999999998753322111112111 1 122222 2357888888764221
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
+ ...+..|+++..+|.+|..
T Consensus 244 ----~-~~~~~~l~~~G~~v~~g~~ 263 (339)
T 1rjw_A 244 ----F-QSAYNSIRRGGACVLVGLP 263 (339)
T ss_dssp ----H-HHHHHHEEEEEEEEECCCC
T ss_pred ----H-HHHHHHhhcCCEEEEeccc
Confidence 1 4556777888888888753
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.043 Score=57.35 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=59.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee---c----CCHHHHhc-----cCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~ADVV~l~lP 227 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....++.. + .++.+.+. ..|+|+-++.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence 58899999999999999999999999 8999998764433211222211 1 12333222 4788888776
Q ss_pred CChhhHhhccHHHHhccCCC-cEEEEcCC
Q 006758 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~G-AvLINvgR 255 (632)
. +.+ + ...+..++++ ..+|.+|-
T Consensus 275 ~-~~~---~-~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 275 T-AQT---L-KAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp C-HHH---H-HHHHHTBCTTTCEEEECCC
T ss_pred C-HHH---H-HHHHHHhhcCCCEEEEECC
Confidence 3 111 1 3556777877 77777764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.033 Score=58.08 Aligned_cols=90 Identities=14% Similarity=0.109 Sum_probs=59.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee---c----CCHHHHhc-----cCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M----DTLNDLLA-----ASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~---~----~sL~eLL~-----~ADVV~l~lP 227 (632)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++....+.....++.. + .++.+.+. ..|+|+.++.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence 68899999999999999999999999 8999998764433111122211 1 12333222 4788888876
Q ss_pred CChhhHhhccHHHHhccCCC-cEEEEcCC
Q 006758 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~G-AvLINvgR 255 (632)
..+ + + ...+..++++ ..+|.+|-
T Consensus 270 ~~~-~---~-~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 270 NVK-V---M-RAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp CHH-H---H-HHHHHTBCTTTCEEEECSC
T ss_pred cHH-H---H-HHHHHhhccCCcEEEEEec
Confidence 422 1 1 4566778887 77887764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.034 Score=58.73 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=65.9
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC--------cccc-cCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK--------VTFP-SAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~--------~~~~-~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
+.+++|+|||. |.||..+|..+..+|. +|..+|......+ ..++ .......++.+.+++||+|+++..
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 46789999998 9999999998888775 8999998643111 0111 112233578888999999999864
Q ss_pred CC--hh---------hHhhcc--HHHHhccCCCcE-EEEcCCChhhcHHHHHH
Q 006758 228 VT--DE---------TIQIIN--AECLQHIKPGAF-LVNTGSSQLLDDCAVKQ 266 (632)
Q Consensus 228 lT--~~---------T~~lI~--~~~L~~MK~GAv-LINvgRG~iVDe~AL~~ 266 (632)
.. +. +..++. .+.+....|.++ +|+++ ..+|.-..+-
T Consensus 86 ~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i~ 136 (343)
T 3fi9_A 86 APRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLVT 136 (343)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHHH
Confidence 32 11 111111 123334457785 88886 4666655443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.027 Score=55.56 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=46.7
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce----ecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR----RMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~----~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.++|.|.|.|.||+.+++.|...|.+|++++|+..........++. ...+++ +..+|+|+.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 4789999999999999999999999999999876432110011111 122333 77899998887654
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.056 Score=56.23 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=63.6
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCC----CCCCC-------c---ccccCceecCCHHHHhccC
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKM-------SVLYFDVP----EGKGK-------V---TFPSAARRMDTLNDLLAAS 219 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~----~~~~~-------~---~~~~g~~~~~sL~eLL~~A 219 (632)
.++|+|+|. |.||..++..|...|+ +|..+|+. ..... . .+........++.+.+++|
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 468999997 9999999999987775 89999987 21000 0 1111222346788999999
Q ss_pred CEEEEccCCChh---hH--------hhcc--HHHHhcc-CCCcEEEEcCCChhhcHHH
Q 006758 220 DVISLHCAVTDE---TI--------QIIN--AECLQHI-KPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 220 DVV~l~lPlT~~---T~--------~lI~--~~~L~~M-K~GAvLINvgRG~iVDe~A 263 (632)
|+|+++...... ++ .++- .+.+... +|.++||+++ ..+|.-.
T Consensus 85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S--NPv~~~t 140 (329)
T 1b8p_A 85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG--NPANTNA 140 (329)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHH
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc--CchHHHH
Confidence 999988764321 10 1110 1233334 4788999997 4454444
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.033 Score=57.67 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=34.7
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
..+|++++|.|||.|.+|..+|..|...|. ++.++|...
T Consensus 31 q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 31 YEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp -CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 457999999999999999999999999887 899999764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.04 Score=56.04 Aligned_cols=72 Identities=15% Similarity=0.054 Sum_probs=47.8
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--cCc-------eecCCHHHHhcc--CCEEEEc
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--SAA-------RRMDTLNDLLAA--SDVISLH 225 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--~g~-------~~~~sL~eLL~~--ADVV~l~ 225 (632)
..+.+++|.|.| .|.||+.+++.|...|.+|+++++.......... .++ ....++.+++.. +|+|+.+
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~ 96 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT 96 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence 457899999998 6999999999999999999999987532211110 011 112235567777 8999887
Q ss_pred cCCC
Q 006758 226 CAVT 229 (632)
Q Consensus 226 lPlT 229 (632)
....
T Consensus 97 A~~~ 100 (333)
T 2q1w_A 97 AASY 100 (333)
T ss_dssp CCCC
T ss_pred ceec
Confidence 7643
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.052 Score=54.43 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=48.6
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC----cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+++|.|.| .|.||+.+++.|...|.+|++.+|...... ........ ..++.+++..+|+|+.+....
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~ 73 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAATR 73 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEccccC
Confidence 46899999 699999999999999999999998832211 00011122 345778888999999887654
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.01 Score=62.67 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=49.9
Q ss_pred cEEEEEeCC-hhhHHHHHHHhhC-CCEEE-EECCCCCCCCc-ccccCceecCCHHHHhcc--CCEEEEccCCCh
Q 006758 163 LVLGIVGRS-ASARALATRSLSF-KMSVL-YFDVPEGKGKV-TFPSAARRMDTLNDLLAA--SDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG-~IG~~vA~~Lkaf-Gm~V~-~~dr~~~~~~~-~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~ 230 (632)
.+|||||+| .||...+..+... +++|. ++|++...... ....++..+.++++++.+ .|+|++++|...
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~ 76 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQF 76 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGG
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHH
Confidence 479999999 9999999998875 67765 56877533221 111244567899999985 899999999643
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.032 Score=59.16 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=57.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee---c--CCHH----HHhc--cCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M--DTLN----DLLA--ASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~---~--~sL~----eLL~--~ADVV~l~lPl 228 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|+.. . .++. ++.. ..|+|+-++..
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 68999999999999999999999999 9999997754332111112211 0 1222 2221 47888877765
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
...+...+.......++++..+|.+|-
T Consensus 293 ~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 293 PQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 322221111111123377777777764
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.1 Score=54.99 Aligned_cols=96 Identities=11% Similarity=0.078 Sum_probs=67.9
Q ss_pred cccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCC--CCccc---------c--cC--ceecCCHHHHhccCCE
Q 006758 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGK--GKVTF---------P--SA--ARRMDTLNDLLAASDV 221 (632)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~--~~~~~---------~--~g--~~~~~sL~eLL~~ADV 221 (632)
.+.|.+|+|||=| ++..+++..+..||++|.+..|..-. ....+ . .| +....++++.++++||
T Consensus 158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv 237 (328)
T 3grf_A 158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV 237 (328)
T ss_dssp TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence 4799999999986 88888888899999999999986432 11000 0 12 3456799999999999
Q ss_pred EEEc----cCCChh---------hHhhccHHHHhccCCCcEEEEcC
Q 006758 222 ISLH----CAVTDE---------TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 222 V~l~----lPlT~~---------T~~lI~~~~L~~MK~GAvLINvg 254 (632)
|..- +....+ ..--++.+.++.+|++++|..+.
T Consensus 238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l 283 (328)
T 3grf_A 238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL 283 (328)
T ss_dssp EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence 9873 221111 11236888888899999988875
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.75 E-value=0.019 Score=58.17 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=56.6
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee---c---CCHHHHhccCCEEEEccCCChhhH
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M---DTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~---~---~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.|.+|.|+|. |.||..+++.++.+|++|++.+++....+.....++.. . .++.+.+...|+|+. +.. + +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~-~- 200 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K-E- 200 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T-T-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H-H-
Confidence 5889999998 99999999999999999999998754433111122211 1 112222355777777 654 1 1
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
-...+..|+++..+|.++-
T Consensus 201 ---~~~~~~~l~~~G~~v~~g~ 219 (302)
T 1iz0_A 201 ---VEESLGLLAHGGRLVYIGA 219 (302)
T ss_dssp ---HHHHHTTEEEEEEEEEC--
T ss_pred ---HHHHHHhhccCCEEEEEeC
Confidence 1455667777777777653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.012 Score=60.92 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=55.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee---c--CCHHHHhc------cCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR---M--DTLNDLLA------ASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~---~--~sL~eLL~------~ADVV~l~lPl 228 (632)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++....+.....++.. . .++.+.+. ..|+|+.+++.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~ 246 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 68899999999999999999999999 9999998753322111111110 1 12222111 36777777653
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+. + ...+..|+++..+|.+|.
T Consensus 247 ~~~----~-~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 247 PKA----L-EQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp HHH----H-HHHHHHEEEEEEEEECCC
T ss_pred HHH----H-HHHHHHHhcCCEEEEEcc
Confidence 111 1 344556666667776654
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.12 Score=53.94 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=66.9
Q ss_pred cc-CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CR-GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~-GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+. |++|+|||= +++..+++..+..||++|.+..|..-.....+ ...+....++++.++++|||..-.
T Consensus 143 l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~ 222 (307)
T 3tpf_A 143 QNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDT 222 (307)
T ss_dssp GGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecC
Confidence 68 999999996 56778888888899999999998653222111 112334679999999999998865
Q ss_pred --CCCh--h--------hHhhccHHHHhccCCCcEEEEcC
Q 006758 227 --AVTD--E--------TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 227 --PlT~--~--------T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.... + ..--++.+.++.+|++++|.-+.
T Consensus 223 w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l 262 (307)
T 3tpf_A 223 WVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL 262 (307)
T ss_dssp SSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred cccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence 1111 0 01225788888888888888776
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.044 Score=54.50 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=30.6
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+++|.|+|. |.||+.+++.|...|.+|.+.+|+.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 467999996 9999999999998899999998875
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.089 Score=54.18 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=68.5
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChhhHhhcc
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~~lI~ 237 (632)
..+++|+|. |++|+.+++.+...|++ |..+++... .. . ..+...+.+++++.. ..|++++++|- +.+..++.
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~-g~-~-i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v~ 88 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKG-GQ-N-VHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAVF 88 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCT-TC-E-ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCC-Cc-e-ECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHHH
Confidence 345788899 99999999999988887 335565432 11 1 135666789999998 89999999995 33344432
Q ss_pred HHHHhccCCCcEEEEcCCC-hhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPGAFLVNTGSS-QLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG-~iVDe~AL~~AL~sg~I~ 274 (632)
+.++ ..... +|..+.| ...+.++|.++.++..+.
T Consensus 89 -ea~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~ 123 (294)
T 2yv1_A 89 -EAID-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGVK 123 (294)
T ss_dssp -HHHH-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred -HHHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 2333 22222 3334444 234567888888876553
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.02 Score=59.68 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=61.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-ccCce---ecCC---HHHHhccCCEEEEccCCChhhH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF-PSAAR---RMDT---LNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-~~g~~---~~~s---L~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.|.+|.|+|.|.||...++.++.+|++|++.+++....+... ..++. ...+ +.++....|+|+-++.....
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~-- 257 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA-- 257 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence 688999999999999999999999999999998764332111 22221 1222 22333457888888864221
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
-...+..++++..+|.+|-
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ---SHHHHTTEEEEEEEEECSC
T ss_pred ---HHHHHHHhccCCEEEEeCC
Confidence 1345677888888888874
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.063 Score=54.93 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=47.7
Q ss_pred cEEEEEe-CChhhHHHHHHHhh-CCCEEEE-ECCCCCC--CCc-----ccccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLS-FKMSVLY-FDVPEGK--GKV-----TFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka-fGm~V~~-~dr~~~~--~~~-----~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+.... ... ....++....++++++..+|+|+-+.+
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~ 82 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL 82 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence 5799999 99999999998875 4888776 5876421 110 011244456799999999999998875
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.099 Score=51.83 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=34.3
Q ss_pred cccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 157 MRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 157 ~~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
|.++.|+++.|.|. |.||+.+|+.|...|++|+++++.
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence 45689999999996 579999999999999999999886
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.068 Score=53.47 Aligned_cols=37 Identities=14% Similarity=-0.020 Sum_probs=33.8
Q ss_pred cccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 57 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP 57 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 478999999998 5999999999999999999998875
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.027 Score=60.43 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=47.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-----eecCCHHHHhccCCEEEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-----RRMDTLNDLLAASDVISL 224 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-----~~~~sL~eLL~~ADVV~l 224 (632)
-+.|++|+|||-|.+|+.+++.++.+|++|+++|++.......+.... ...+.+.+++..+|+|+.
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~ 102 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST 102 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence 358999999999999999999999999999999987643221111111 112245667778999973
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.081 Score=52.06 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=33.1
Q ss_pred cccCcEEEEEeC-Ch--hhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SA--SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~--IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++.|+++.|.|. |. ||+.+|+.|...|++|++.+++.
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 478999999997 45 99999999999999999998874
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.044 Score=57.36 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=58.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCceec-------CCHHHHhc-----cCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARRM-------DTLNDLLA-----ASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~~-------~sL~eLL~-----~ADVV~l~lP 227 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....++... .++.+.+. ..|+|+-++.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence 68899999999999999999999999 89999987654432222232211 12222222 3688877766
Q ss_pred CChhhHhhccHHHHhccCCC-cEEEEcCC
Q 006758 228 VTDETIQIINAECLQHIKPG-AFLVNTGS 255 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~G-AvLINvgR 255 (632)
.. .+ + ...+..+++| ..+|.+|-
T Consensus 273 ~~-~~---~-~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 273 NV-SV---M-RAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp CH-HH---H-HHHHHTBCTTTCEEEECSC
T ss_pred CH-HH---H-HHHHHHhhccCCEEEEEcc
Confidence 31 11 1 3456677775 77777663
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.037 Score=55.97 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=33.7
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+.|+++.|+| .|.||+.++..|...|++|++++|+.
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 6789999999 99999999999999999999999874
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.046 Score=54.10 Aligned_cols=67 Identities=4% Similarity=0.009 Sum_probs=48.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|.|.| .|.||+.+++.|... |.+|.+.+|+..........++ ....++.+++..+|+|+.+.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~ 76 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII 76 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence 3688999 599999999999987 9999999987643321111111 12345678899999999887754
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.015 Score=62.20 Aligned_cols=34 Identities=6% Similarity=-0.022 Sum_probs=30.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC---CEEEEECCCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFK---MSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG---m~V~~~dr~~~ 196 (632)
++|+|+|.|.||+.+|+.|...| .+|.+++++..
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~ 38 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLS 38 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHH
Confidence 47999999999999999999887 49999998753
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.04 Score=58.16 Aligned_cols=39 Identities=8% Similarity=0.137 Sum_probs=35.0
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
...|++++|.|||.|.+|..+|..|...|. ++.++|...
T Consensus 113 q~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp HHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 357899999999999999999999999998 899998764
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.055 Score=58.91 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=66.6
Q ss_pred cccCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccC
Q 006758 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+.|++|+|+|+- .-...|++.|...|++|.+|||...... ..+........++++.+..+|+|+++++
T Consensus 315 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~ 394 (450)
T 3gg2_A 315 NVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTE 394 (450)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSC
T ss_pred cCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccC
Confidence 4689999999984 3468999999999999999999874211 1122224455788999999999999988
Q ss_pred CChhhHhhccHHHH-hccCCCcEEEEcCCC
Q 006758 228 VTDETIQIINAECL-QHIKPGAFLVNTGSS 256 (632)
Q Consensus 228 lT~~T~~lI~~~~L-~~MK~GAvLINvgRG 256 (632)
.. +-+. ++-+.+ ..|+ +.+||++ |+
T Consensus 395 ~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~ 420 (450)
T 3gg2_A 395 WK-EFRM-PDWSALSQAMA-ASLVIDG-RN 420 (450)
T ss_dssp CG-GGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred CH-HHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence 63 2222 344444 4465 6688885 54
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.08 Score=53.14 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=50.2
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCC-------------c-cc-ccCceecCCHHHHhccCCEEE
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGK-------------V-TF-PSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~-------------~-~~-~~g~~~~~sL~eLL~~ADVV~ 223 (632)
+.|++|.|.|. |.||+.+++.|...|.+|++++++..... . .+ .........+++++...|+|+
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 88 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA 88 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence 57899999997 99999999999999999999988642110 0 00 111222345667788899998
Q ss_pred EccCCC
Q 006758 224 LHCAVT 229 (632)
Q Consensus 224 l~lPlT 229 (632)
.+....
T Consensus 89 h~A~~~ 94 (342)
T 1y1p_A 89 HIASVV 94 (342)
T ss_dssp ECCCCC
T ss_pred EeCCCC
Confidence 877543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.04 Score=54.49 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=49.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc----ccccCceecCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~----~~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
.+++|.|.| .|.||+.+++.|...|++|++.+++...... .+........++.+++...|+|+.+...
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~ 74 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGI 74 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence 467899999 6999999999999999999999988643320 0111122234567788899999987654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.075 Score=53.66 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=34.7
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.++.|+++.|.|. |.||+.+|+.|...|++|++.+++..
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~ 82 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE 82 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4689999999996 78999999999999999999988753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.029 Score=58.33 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=59.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCce---ecC-----CH-HHHh----ccCCEEEEcc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAAR---RMD-----TL-NDLL----AASDVISLHC 226 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~---~~~-----sL-~eLL----~~ADVV~l~l 226 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....++. .+. ++ +++. ...|+|+.++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 58899999999999999999999999 999999775432211112221 111 11 1121 2478888887
Q ss_pred CCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 227 AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.... + + ...+..++++..+|.+|-
T Consensus 251 g~~~-~---~-~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 251 GAEA-S---I-QAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCHH-H---H-HHHHHHSCTTCEEEECSC
T ss_pred CChH-H---H-HHHHHHhcCCCEEEEEec
Confidence 6421 1 1 345677888888888764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.038 Score=57.23 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=58.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce---ecC---C-HH---HHh-----ccCCEEEEc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---RMD---T-LN---DLL-----AASDVISLH 225 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~---~~~---s-L~---eLL-----~~ADVV~l~ 225 (632)
.|.+|.|+|.|.||..+++.++.+|++|++.+++....+.....++. .+. + .+ ++. ...|+|+.+
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 58899999999999999999999999999998765332211111211 111 1 12 222 247888888
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
+.... + + ...+..|+++..+|.+|-
T Consensus 248 ~g~~~-~---~-~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 248 SGNEK-C---I-TIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SCCHH-H---H-HHHHHHSCTTCEEEECSC
T ss_pred CCCHH-H---H-HHHHHHHhcCCEEEEEec
Confidence 76421 1 1 345677788888888764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.011 Score=55.70 Aligned_cols=35 Identities=9% Similarity=-0.048 Sum_probs=32.2
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|++|.|+| .|.||..+++.++..|++|++.+++.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 73 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 73 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 688999999 69999999999999999999999865
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=94.40 E-value=0.032 Score=55.39 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=33.9
Q ss_pred cccCcEEEEEe---CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVG---RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIG---lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.| -|.||+.+|+.|...|++|++.+++.
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~ 43 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 43 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence 47899999999 59999999999999999999999875
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.028 Score=58.42 Aligned_cols=97 Identities=8% Similarity=0.069 Sum_probs=60.5
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC-ccc---------ccC-ceecCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK-VTF---------PSA-ARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~---------~~g-~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
.+++|.|.| .|.||+.+++.|...|++|++.+|+..... ..+ ... .....++.+++..+|+|+.++..
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 367899999 599999999999999999999988764320 000 001 11123467788999999977654
Q ss_pred ChhhHhhccHHHHhccC-CC--cEEEEcCCCh
Q 006758 229 TDETIQIINAECLQHIK-PG--AFLVNTGSSQ 257 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK-~G--AvLINvgRG~ 257 (632)
............+..++ .| ..||+++...
T Consensus 84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence 31111222233444332 23 3788887754
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.072 Score=58.16 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=71.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCC----CCC---C------------cccccCceecCCHHHHhc-
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLY-FDVPE----GKG---K------------VTFPSAARRMDTLNDLLA- 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~-~dr~~----~~~---~------------~~~~~g~~~~~sL~eLL~- 217 (632)
++.|++|.|.|+|++|+.+|+.|...|++|+. .|.+. ..+ + ..++ +.. ..+.++++.
T Consensus 232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~-~a~-~i~~~ei~~~ 309 (440)
T 3aog_A 232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYP-KAE-PLPAADFWGL 309 (440)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCT-TSE-ECCHHHHTTC
T ss_pred CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCC-Cce-EcCchhhhcC
Confidence 58899999999999999999999999999984 44431 000 0 0111 112 224556653
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.|||++-|.+ .+.|+.+....++ ..+++-.+-+.+. .+| .+.|.+..|.
T Consensus 310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~ 358 (440)
T 3aog_A 310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVL 358 (440)
T ss_dssp CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCE
Confidence 6999988755 3667777777774 6788888888875 333 3445555554
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=94.38 E-value=0.04 Score=60.34 Aligned_cols=108 Identities=7% Similarity=0.089 Sum_probs=69.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC--------CCCCc----------------cc--ccCceecCCH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE--------GKGKV----------------TF--PSAARRMDTL 212 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~--------~~~~~----------------~~--~~g~~~~~sL 212 (632)
.+.|+||.|=|+|++|..+|+.|...|++|++++... -..+. .+ ..+...+ +-
T Consensus 232 ~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~-~~ 310 (450)
T 4fcc_A 232 GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL-EG 310 (450)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE-ET
T ss_pred CcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe-cC
Confidence 5899999999999999999999999999998765321 10000 00 0011111 11
Q ss_pred HH-HhccCCEEEEccCCChhhHhhccHHHHhccCCC--cEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 213 ND-LLAASDVISLHCAVTDETIQIINAECLQHIKPG--AFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 213 ~e-LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~G--AvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++ +-..|||++-|. +.+.|+.+....++.. .++++-+.+.+-.+. .+.|.+..|.
T Consensus 311 ~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA--~~iL~~rGIl 368 (450)
T 4fcc_A 311 QQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIEA--TELFQQAGVL 368 (450)
T ss_dssp CCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH--HHHHHHTTCE
T ss_pred cccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHHH--HHHHHHCCCE
Confidence 12 223589886663 4577888888888643 578888888765443 2456665554
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.034 Score=57.47 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=59.7
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce---e---cCCHHHHhc-----cCCEEEEccCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---R---MDTLNDLLA-----ASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~---~---~~sL~eLL~-----~ADVV~l~lPl 228 (632)
.|++|.|+|. |.||..+++.++..|++|++.+++....+.....+.. . ..++.+.+. ..|+|+.++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 5889999999 8999999999999999999999875432211111111 1 123333332 46888887763
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+. -...+..|+++..+|+++.
T Consensus 249 ~~~-----~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 249 EAA-----IEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HHH-----HHHHTTSEEEEEEEEECCC
T ss_pred HHH-----HHHHHHHHhcCCEEEEEeC
Confidence 221 1445677788888888775
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.14 Score=54.39 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=63.5
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCccc-------------ccCceecCCHHHHhccCCEEEE
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTF-------------PSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-------------~~g~~~~~sL~eLL~~ADVV~l 224 (632)
.|.|.+|+|||=+ ++..+++..+..||++|.+..|..-.....+ ...+....++++.++++|||..
T Consensus 185 ~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvyt 264 (353)
T 3sds_A 185 GLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVT 264 (353)
T ss_dssp SCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEe
Confidence 4799999999975 4677777778889999999998653211100 1123456799999999999987
Q ss_pred cc--CCChhh----------HhhccHHHHhc--cCCCcEEEEcC
Q 006758 225 HC--AVTDET----------IQIINAECLQH--IKPGAFLVNTG 254 (632)
Q Consensus 225 ~l--PlT~~T----------~~lI~~~~L~~--MK~GAvLINvg 254 (632)
-. +...+- .--|+.+.++. +|++++|..+.
T Consensus 265 d~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL 308 (353)
T 3sds_A 265 DTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL 308 (353)
T ss_dssp CCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred CCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence 43 222110 01356777776 67777777664
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.025 Score=59.33 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=48.2
Q ss_pred CcEEEEEeCChhhH-HHHHHHhhCCCEEE-EECCCCCCCCcc-ccc-CceecCCHHHHhcc--CCEEEEccCCC
Q 006758 162 GLVLGIVGRSASAR-ALATRSLSFKMSVL-YFDVPEGKGKVT-FPS-AARRMDTLNDLLAA--SDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGlG~IG~-~vA~~LkafGm~V~-~~dr~~~~~~~~-~~~-g~~~~~sL~eLL~~--ADVV~l~lPlT 229 (632)
-.+|||||+|.+|. .++..+..-+++|. ++|++....... ... ....+.++++++.+ .|+|++++|..
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~ 99 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSS 99 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHH
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 35899999999995 56777777789855 668775432211 111 23457899999986 89999999853
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.076 Score=52.83 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=45.8
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCC--C-c-----c-cccCc-------eecCCHHHHhccCCEEEE
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKG--K-V-----T-FPSAA-------RRMDTLNDLLAASDVISL 224 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~--~-~-----~-~~~g~-------~~~~sL~eLL~~ADVV~l 224 (632)
.++|.|+|. |.||+.+++.|...|.+|++.+|..... . . . ...++ ....++.+++..+|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 467999996 9999999999999999999999875321 0 0 0 00111 112345667777888877
Q ss_pred ccCC
Q 006758 225 HCAV 228 (632)
Q Consensus 225 ~lPl 228 (632)
+.+.
T Consensus 84 ~a~~ 87 (308)
T 1qyc_A 84 TVGS 87 (308)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7653
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.059 Score=54.17 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=45.1
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC-CCCCc----c----cccCc-------eecCCHHHHhccCCEEEE
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE-GKGKV----T----FPSAA-------RRMDTLNDLLAASDVISL 224 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~-~~~~~----~----~~~g~-------~~~~sL~eLL~~ADVV~l 224 (632)
.++|.|+|. |.||+.+++.|...|.+|.+.+|+. ..... . ...++ ...+++.+++..+|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~ 83 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS 83 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 467999995 9999999999999999999999875 21000 0 00111 112346667777888777
Q ss_pred ccCC
Q 006758 225 HCAV 228 (632)
Q Consensus 225 ~lPl 228 (632)
+...
T Consensus 84 ~a~~ 87 (321)
T 3c1o_A 84 ALPF 87 (321)
T ss_dssp CCCG
T ss_pred CCCc
Confidence 7653
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.054 Score=58.56 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=70.3
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---ccc-ccCceec--CCHHHHhcc-CCEEEEccCCChh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTF-PSAARRM--DTLNDLLAA-SDVISLHCAVTDE 231 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~~~-~~g~~~~--~sL~eLL~~-ADVV~l~lPlT~~ 231 (632)
++.|++|.|||+|.+|.++|+.|+..|++|.++|....... ..+ ..++... ...++++.. +|+|++.--..+.
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN 85 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence 46899999999999999999999999999999998652110 011 1232211 123456666 8999986333222
Q ss_pred h--------Hh--hccH-HHHhccCCC-cEEEEcCCChhhcHHHHHHHHHcCC
Q 006758 232 T--------IQ--IINA-ECLQHIKPG-AFLVNTGSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 232 T--------~~--lI~~-~~L~~MK~G-AvLINvgRG~iVDe~AL~~AL~sg~ 272 (632)
+ .+ ++.+ +.+..+.+. .+-|--+.|+.--..-|...|+...
T Consensus 86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 138 (451)
T 3lk7_A 86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG 138 (451)
T ss_dssp SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 1 11 3443 344443333 3444445688776666777777544
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.064 Score=52.20 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccC----CEEEEccCCCh-h-----
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAAS----DVISLHCAVTD-E----- 231 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~A----DVV~l~lPlT~-~----- 231 (632)
+++.|.|. |.||+.+|+.|...|++|++.+++.......+........++++++... |+|+.+.-... .
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~ 81 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN 81 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence 45777774 7899999999999999999999876433211111122233455666554 99998876543 0
Q ss_pred --------hHhhccHHHHhccCC--CcEEEEcCCChhh
Q 006758 232 --------TIQIINAECLQHIKP--GAFLVNTGSSQLL 259 (632)
Q Consensus 232 --------T~~lI~~~~L~~MK~--GAvLINvgRG~iV 259 (632)
+.. +....+..|++ +..|||+++....
T Consensus 82 ~~~~N~~g~~~-l~~~~~~~~~~~~~g~iv~isS~~~~ 118 (257)
T 1fjh_A 82 VVSVNYFGATE-LMDAFLPALKKGHQPAAVVISSVASA 118 (257)
T ss_dssp HHHHHTHHHHH-HHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred HHHHhhHHHHH-HHHHHHHHHhhcCCcEEEEECChhhh
Confidence 111 12334555533 3688898886543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.017 Score=61.17 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=50.2
Q ss_pred CcEEEEEeCCh---hhHHHHHHHhhCC-CEEE--EECCCCCCCCc-ccccCc---eecCCHHHHhcc-------CCEEEE
Q 006758 162 GLVLGIVGRSA---SARALATRSLSFK-MSVL--YFDVPEGKGKV-TFPSAA---RRMDTLNDLLAA-------SDVISL 224 (632)
Q Consensus 162 GktVGIIGlG~---IG~~vA~~LkafG-m~V~--~~dr~~~~~~~-~~~~g~---~~~~sL~eLL~~-------ADVV~l 224 (632)
-.+|||||+|. ||+..+..++..+ ++|+ ++|++...... ....++ ..+.++++++.. .|+|++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i 91 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI 91 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence 46799999999 9999988887664 7776 46887643321 111233 456899999975 899999
Q ss_pred ccCCCh
Q 006758 225 HCAVTD 230 (632)
Q Consensus 225 ~lPlT~ 230 (632)
++|...
T Consensus 92 ~tp~~~ 97 (398)
T 3dty_A 92 ATPNGT 97 (398)
T ss_dssp ESCGGG
T ss_pred CCCcHH
Confidence 999644
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.046 Score=54.16 Aligned_cols=68 Identities=22% Similarity=0.140 Sum_probs=47.0
Q ss_pred cCcEEEEEeCChhhHHHHHHH--hhCCCEEEE-ECCCCC-CCCc-c-cccCceecCCHHHHhcc--CCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRS--LSFKMSVLY-FDVPEG-KGKV-T-FPSAARRMDTLNDLLAA--SDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~L--kafGm~V~~-~dr~~~-~~~~-~-~~~g~~~~~sL~eLL~~--ADVV~l~lPl 228 (632)
...+|+|||.|++|+.+++.+ ...|+++.+ +|.++. .... . ....+...+++++++++ .|++++++|.
T Consensus 83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence 446899999999999999973 456888665 576654 3211 1 11223345788888875 8999999995
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.12 Score=54.85 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=63.0
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc------cccCc-eecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVT------FPSAA-RRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~------~~~g~-~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
+-.+||||| .|.+|+.+.++|... .+++..+......++.. +.... ....+.++++.++|+|++|+|...
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~- 90 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA- 90 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH-
Confidence 345799997 799999999999876 45777766443333210 10111 111245566688999999999532
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHH
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~ 265 (632)
..+....+ .|+.+|+.+..--.+..+.+
T Consensus 91 -----s~~~~~~~-~g~~VIDlSsdfRl~~~~~y 118 (351)
T 1vkn_A 91 -----SYDLVREL-KGVKIIDLGADFRFDDPGVY 118 (351)
T ss_dssp -----HHHHHTTC-CSCEEEESSSTTTCSSHHHH
T ss_pred -----HHHHHHHh-CCCEEEECChhhhCCchhhh
Confidence 33444555 79999999876555554433
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.022 Score=59.46 Aligned_cols=36 Identities=11% Similarity=-0.044 Sum_probs=33.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||...++.++.+|++|++.+++..
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~ 224 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE 224 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence 689999999999999999999999999999997753
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.069 Score=54.06 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=34.0
Q ss_pred cccccCcEEEEEeCC-h--hhHHHHHHHhhCCCEEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRS-A--SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG-~--IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+..+.|+++.|.|.+ . ||+.+|+.|...|++|++.+++.
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~ 67 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD 67 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence 456899999999984 4 99999999999999999998873
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.089 Score=55.09 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=68.5
Q ss_pred cEEEEEeCChhhHHHHHHHhh---------CCCEEEEE-CCCCCCCCc-----ccc---cCceecC--CHHHHhcc--CC
Q 006758 163 LVLGIVGRSASARALATRSLS---------FKMSVLYF-DVPEGKGKV-----TFP---SAARRMD--TLNDLLAA--SD 220 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka---------fGm~V~~~-dr~~~~~~~-----~~~---~g~~~~~--sL~eLL~~--AD 220 (632)
.+|||||+|.||+.+++.+.. .+++|.++ |++...... .+. .....+. ++++++.+ .|
T Consensus 3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD 82 (327)
T 3do5_A 3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD 82 (327)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence 379999999999999999875 47776665 555322110 000 0111233 89999864 89
Q ss_pred EEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhh-cHHHHHHHHHcCCcc
Q 006758 221 VISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLL-DDCAVKQLLIDGTLA 274 (632)
Q Consensus 221 VV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iV-De~AL~~AL~sg~I~ 274 (632)
+|+.++|....+.. .-.-....|+.|.-+|-..-+.+. .-..|.++.++....
T Consensus 83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~ 136 (327)
T 3do5_A 83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR 136 (327)
T ss_dssp EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence 99999996533211 112345667888877766444443 456677777766553
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.03 Score=58.49 Aligned_cols=68 Identities=18% Similarity=0.117 Sum_probs=45.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEE-CCCCCCCCccc-ccC------------------ceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYF-DVPEGKGKVTF-PSA------------------ARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~-dr~~~~~~~~~-~~g------------------~~~~~sL~eLL~~ADV 221 (632)
.+|||+|+|.||+.+++.+... +++|.++ |++........ ..+ .....++++++.++|+
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv 82 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI 82 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence 3799999999999999999865 5776555 55432111000 000 1223578889889999
Q ss_pred EEEccCCCh
Q 006758 222 ISLHCAVTD 230 (632)
Q Consensus 222 V~l~lPlT~ 230 (632)
|+.|+|..-
T Consensus 83 V~~aTp~~~ 91 (334)
T 2czc_A 83 IVDATPGGI 91 (334)
T ss_dssp EEECCSTTH
T ss_pred EEECCCccc
Confidence 999999643
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.17 Score=51.80 Aligned_cols=38 Identities=3% Similarity=-0.018 Sum_probs=35.5
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+|.|++|.|||.|.+|...++.|...|++|.++++..
T Consensus 9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 46899999999999999999999999999999999764
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.29 Score=51.76 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECC
Q 006758 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDV 193 (632)
Q Consensus 115 a~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr 193 (632)
....||.++-|=|-+.|- ..|.. .+...|++++|.|||.|.+|..+|+.|...|. ++.++|.
T Consensus 4 p~~~~~~~~~lnl~lm~w-----------Rll~~------~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~ 66 (340)
T 3rui_A 4 PLKIADQSVDLNLKLMKW-----------RILPD------LNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN 66 (340)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------HTCTT------CCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHH-----------hhcch------hhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 345677777766655431 12221 13357899999999999999999999999998 7888887
Q ss_pred CCCCCC---cc--c--------------------ccCc--eec---------------------CCHHHHhccCCEEEEc
Q 006758 194 PEGKGK---VT--F--------------------PSAA--RRM---------------------DTLNDLLAASDVISLH 225 (632)
Q Consensus 194 ~~~~~~---~~--~--------------------~~g~--~~~---------------------~sL~eLL~~ADVV~l~ 225 (632)
..-... .. + ...+ ..+ ..+.+++..+|+|+.+
T Consensus 67 D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~ 146 (340)
T 3rui_A 67 GTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLL 146 (340)
T ss_dssp CBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred CEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEec
Confidence 541110 00 0 0000 001 1246788889999887
Q ss_pred cCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 226 CAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 226 lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
+- +.+|+.+++..... .+..+|+.+
T Consensus 147 tD-n~~tR~lin~~c~~---~~~plI~aa 171 (340)
T 3rui_A 147 VD-SRESRWLPSLLSNI---ENKTVINAA 171 (340)
T ss_dssp CS-STGGGHHHHHHHHH---TTCEEEEEE
T ss_pred CC-CHHHHHHHHHHHHH---cCCcEEEee
Confidence 65 45688888776554 344567754
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.024 Score=58.71 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=49.8
Q ss_pred cCcEEEEEeCC-hhhHHHHHHHhhC--CCEE-EEECCCCCCCCccc-ccCc-eecCCHHHHhc--cCCEEEEccCCC
Q 006758 161 RGLVLGIVGRS-ASARALATRSLSF--KMSV-LYFDVPEGKGKVTF-PSAA-RRMDTLNDLLA--ASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGlG-~IG~~vA~~Lkaf--Gm~V-~~~dr~~~~~~~~~-~~g~-~~~~sL~eLL~--~ADVV~l~lPlT 229 (632)
.-.+|||||+| .+|+..+..++.. +++| .++|++........ ..+. ..+.++++++. +.|+|++++|..
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 93 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE 93 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 34679999999 8999999999876 5776 56787754322100 1122 45689999997 589999999953
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.061 Score=53.51 Aligned_cols=37 Identities=24% Similarity=0.169 Sum_probs=33.3
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~ 40 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE 40 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999986 7899999999999999999999875
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=94.13 E-value=0.087 Score=57.33 Aligned_cols=99 Identities=10% Similarity=0.119 Sum_probs=68.1
Q ss_pred cccCcEEEEEeCCh----------hhHHHHHHHhhCCCEEEEECCCCCCCC--ccc-------c----cCceecCCHHHH
Q 006758 159 RCRGLVLGIVGRSA----------SARALATRSLSFKMSVLYFDVPEGKGK--VTF-------P----SAARRMDTLNDL 215 (632)
Q Consensus 159 ~L~GktVGIIGlG~----------IG~~vA~~LkafGm~V~~~dr~~~~~~--~~~-------~----~g~~~~~sL~eL 215 (632)
.+.|++|+|+|+.- -...|++.|...|++|.+|||...... ..+ + .+.....++.+.
T Consensus 326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467)
T 2q3e_A 326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA 405 (467)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence 36899999999863 688999999999999999999853221 000 0 012334578889
Q ss_pred hccCCEEEEccCCChhhHhhccHHHH-hccCCCcEEEEcCCChhhcH
Q 006758 216 LAASDVISLHCAVTDETIQIINAECL-QHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 216 L~~ADVV~l~lPlT~~T~~lI~~~~L-~~MK~GAvLINvgRG~iVDe 261 (632)
+..+|+|++++... +-+. ++-+.+ ..|+...+++++ |+ ++|.
T Consensus 406 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~ 448 (467)
T 2q3e_A 406 CDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RR-VLDG 448 (467)
T ss_dssp HTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SC-TTTT
T ss_pred HhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CC-cCCc
Confidence 99999999998873 3333 354444 567766668875 54 3443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.077 Score=53.33 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=45.7
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc----cccCc-------eecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT----FPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~----~~~g~-------~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|.|+|. |.||+.+++.|...|.+|.+.+|+....... ...++ ...+++.+++..+|+|+.+.+.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 57999995 9999999999999999999999876411100 00111 1123466777888888877653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.1 Score=52.64 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=45.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|.|.| .|.||+.+++.|...|.+|++++|+..........++ ....++.+++..+|+|+.+...
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~ 87 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY 87 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence 5899999 5999999999999999999999987643321000011 1123466788889999887764
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.056 Score=53.40 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=33.6
Q ss_pred cccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 45 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 45 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence 478999999997 6999999999999999999999875
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.041 Score=54.38 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.6
Q ss_pred cccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~ 44 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478999999998 6999999999999999999998875
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.021 Score=60.59 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=47.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC---------CCEEE-EECCCCCCCCcc-cccCc-eecCCHHHHhc--cCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSF---------KMSVL-YFDVPEGKGKVT-FPSAA-RRMDTLNDLLA--ASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf---------Gm~V~-~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~--~ADVV~l~lPl 228 (632)
.+|||||+|.||+.-+..++.. +++|. ++|++....+.. ...+. ..+.+++++|+ +.|+|++++|.
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 4799999999999888877653 45655 557775432210 11122 45689999996 47999999996
Q ss_pred Ch
Q 006758 229 TD 230 (632)
Q Consensus 229 T~ 230 (632)
.-
T Consensus 107 ~~ 108 (412)
T 4gqa_A 107 HL 108 (412)
T ss_dssp GG
T ss_pred HH
Confidence 43
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.094 Score=53.62 Aligned_cols=35 Identities=20% Similarity=0.027 Sum_probs=29.3
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+++|.|.| .|.||+.+++.|...|++|+++++...
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 36 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence 46799999 599999999999999999999998753
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.15 Score=55.38 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=70.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhh-CCCEEEEE-CCCCC-------CCC------------cccccCceecCCHHHHh-
Q 006758 159 RCRGLVLGIVGRSASARALATRSLS-FKMSVLYF-DVPEG-------KGK------------VTFPSAARRMDTLNDLL- 216 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lka-fGm~V~~~-dr~~~-------~~~------------~~~~~g~~~~~sL~eLL- 216 (632)
++.|++|.|.|+|++|+.+|+.|.. .|++|+.+ |.+.. ... ..++ +... .+.++++
T Consensus 206 ~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~-~a~~-~~~~eil~ 283 (415)
T 2tmg_A 206 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP-KGER-ITNEELLE 283 (415)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCS-SSEE-ECHHHHTT
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCC-CceE-cCchhhhc
Confidence 5899999999999999999999998 99999844 44210 000 0111 1122 2445655
Q ss_pred ccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 217 ~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
..|||++-|.. .+.|+.+....++ ..+++-.+-+.+- .++ .+.|.+..|.
T Consensus 284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~ 333 (415)
T 2tmg_A 284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL 333 (415)
T ss_dssp CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence 37899988765 3567777777774 6688888888865 333 3445555554
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.073 Score=53.25 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=46.0
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC---cccccCceecCCHHHHhcc--CCEEEEccCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT 229 (632)
.-++|.|.| .|.||+.+++.|...|++|+++++...... ..+........++.+++.. .|+|+.+....
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~ 85 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS 85 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc
Confidence 456788887 599999999999999999999998764311 0000111112345667765 79999887654
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.055 Score=56.85 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=50.6
Q ss_pred EEEEEeCChhhHHHHHHHhhC-CCEEEEE-CCCCCCCCccc-ccCc-----------------eecCCHHHHhccCCEEE
Q 006758 164 VLGIVGRSASARALATRSLSF-KMSVLYF-DVPEGKGKVTF-PSAA-----------------RRMDTLNDLLAASDVIS 223 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~-dr~~~~~~~~~-~~g~-----------------~~~~sL~eLL~~ADVV~ 223 (632)
+|||+|+|.||+.+++.+... +++|.++ |+......... ..+. ....++++++..+|+|+
T Consensus 3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~ 82 (340)
T 1b7g_O 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (340)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence 799999999999999999865 6777655 44321100000 0000 11124556677899999
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.|+|...... .. . ..++.|+..|..+-
T Consensus 83 ~aTp~~~s~~-~a-~---~~~~aG~kvV~~sa 109 (340)
T 1b7g_O 83 DTTPNGVGAQ-YK-P---IYLQLQRNAIFQGG 109 (340)
T ss_dssp ECCSTTHHHH-HH-H---HHHHTTCEEEECTT
T ss_pred ECCCCchhHH-HH-H---HHHHcCCeEEEeCC
Confidence 9998643221 11 1 12344666666543
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.28 Score=53.90 Aligned_cols=127 Identities=13% Similarity=0.186 Sum_probs=92.3
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHh
Q 006758 103 LGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (632)
Q Consensus 103 rGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (632)
..|+|+|.+- .-+|=-+++.+|+.+|-. .+.|.+.+|.|.|.|..|..+|+.+.
T Consensus 186 ~~ipvFnDD~---qGTA~V~lAgllnAlki~-----------------------gk~l~d~riV~~GAGaAGigia~ll~ 239 (487)
T 3nv9_A 186 CDIPVWHDDQ---QGTASVTLAGLLNALKLV-----------------------KKDIHECRMVFIGAGSSNTTCLRLIV 239 (487)
T ss_dssp CSSCEEETTT---HHHHHHHHHHHHHHHHHH-----------------------TCCGGGCCEEEECCSHHHHHHHHHHH
T ss_pred ccCCcccccc---chHHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEECCCHHHHHHHHHHH
Confidence 4899999874 345555788888777531 13478899999999999999999999
Q ss_pred hCCC---EEEEECCCCC--CCCccc------cc--------CceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhc
Q 006758 183 SFKM---SVLYFDVPEG--KGKVTF------PS--------AARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQH 243 (632)
Q Consensus 183 afGm---~V~~~dr~~~--~~~~~~------~~--------g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~ 243 (632)
..|+ +|+.+|+..- ...... .. ......+|.|++..+||++=+--. .-++|+++.++.
T Consensus 240 ~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~---~pg~ft~e~V~~ 316 (487)
T 3nv9_A 240 TAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTP---GPGVVKAEWIKS 316 (487)
T ss_dssp HTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCS---SCCCCCHHHHHT
T ss_pred HcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEeccc---CCCCCCHHHHHh
Confidence 9999 8999998631 110000 00 001245899999999988655311 137899999999
Q ss_pred cCCCcEEEEcCCChh
Q 006758 244 IKPGAFLVNTGSSQL 258 (632)
Q Consensus 244 MK~GAvLINvgRG~i 258 (632)
|.+..+|.=.+.-..
T Consensus 317 Ma~~PIIFaLSNPtp 331 (487)
T 3nv9_A 317 MGEKPIVFCCANPVP 331 (487)
T ss_dssp SCSSCEEEECCSSSC
T ss_pred hcCCCEEEECCCCCc
Confidence 999999998887543
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.053 Score=61.32 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=63.9
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cc----------------------cccC--cee-
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VT----------------------FPSA--ARR- 208 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~----------------------~~~g--~~~- 208 (632)
..|++++|.|||.|.+|..+|+.|...|+ ++.++|...-... .. .... +..
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~ 402 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence 56899999999999999999999999998 8999986521100 00 0000 000
Q ss_pred --------------------cCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 209 --------------------MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 209 --------------------~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.+.+++++..+|+|+.++. +.+++.+++...... +..+|+.+
T Consensus 403 ~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa 464 (598)
T 3vh1_A 403 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA 464 (598)
T ss_dssp CCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred eccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence 1234678889999999875 466788888766553 44666654
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.056 Score=53.13 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=60.5
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-cccCceecCCHHHHhcc-------CCEEEEccCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARRMDTLNDLLAA-------SDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~-------ADVV~l~lPlT 229 (632)
+-.|+++.|.|. |.||+.+|+.|...|++|++.+++....... +........++++++.. -|+|+.+....
T Consensus 19 ~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~ 98 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGW 98 (251)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCC
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 346899999996 6799999999999999999999887543311 11111122234444443 49998876531
Q ss_pred -------hhh----H-----hh-----ccHHHHhccCCCcEEEEcCCCh
Q 006758 230 -------DET----I-----QI-----INAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 230 -------~~T----~-----~l-----I~~~~L~~MK~GAvLINvgRG~ 257 (632)
..+ . ++ +....+..|+++..|||+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~ 147 (251)
T 3orf_A 99 SGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA 147 (251)
T ss_dssp CCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred CCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence 111 0 11 1234556676677888887754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.038 Score=57.00 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=57.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccccc--Cceec--CCHHHHhc-----cCCEEEEccCCCh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPS--AARRM--DTLNDLLA-----ASDVISLHCAVTD 230 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~--g~~~~--~sL~eLL~-----~ADVV~l~lPlT~ 230 (632)
.|.+|.|+|.|.||..+++.++.+|+ +|++.+++....+..... ....+ .++.+.+. ..|+|+.++...+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~ 243 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA 243 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 68899999999999999999999999 999999875332211111 01111 12333222 4677777776322
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCC
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
. + ...+..|+++..+|.+|.
T Consensus 244 ~----~-~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 244 A----I-HQGLMALIPGGEARILGI 263 (343)
T ss_dssp H----H-HHHHHHEEEEEEEEECCC
T ss_pred H----H-HHHHHHHhcCCEEEEEec
Confidence 1 1 345566777777777764
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.031 Score=57.63 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=59.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-------ecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-------RMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~-------~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
.+++.|+|+|.+|+.+|+.|...|. |+++|+++...+ ....+.. ..+.|.++ +.+||.|+++++.. ..
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d--~~ 190 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD--SE 190 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSH--HH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCcc--HH
Confidence 5689999999999999999999999 999998864332 1111111 11234444 77899999998853 33
Q ss_pred hhccHHHHhccCCCcEEEE
Q 006758 234 QIINAECLQHIKPGAFLVN 252 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLIN 252 (632)
+++-...++.+.+...+|=
T Consensus 191 n~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 191 TIHCILGIRKIDESVRIIA 209 (336)
T ss_dssp HHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHHCCCCeEEE
Confidence 4555567777877744443
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.46 Score=49.45 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=50.4
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc-----cccC--ceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSF-KMSVLYFDVPEGKGKVT-----FPSA--ARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~-----~~~g--~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|.+|++||= |++..+++..+..| |++|.+..|..-..... ...| .....++++.++++|||.+.
T Consensus 149 l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 225 (306)
T 4ekn_B 149 IDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVT 225 (306)
T ss_dssp STTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEEC
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeC
Confidence 68999999997 48999999999999 99999999864221100 0112 23457999999999999874
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.03 Score=59.85 Aligned_cols=70 Identities=9% Similarity=0.106 Sum_probs=49.3
Q ss_pred CcEEEEEeCCh---hhHHHHHHHhhCC-CEEE--EECCCCCCCCcc-cccCc---eecCCHHHHhcc-------CCEEEE
Q 006758 162 GLVLGIVGRSA---SARALATRSLSFK-MSVL--YFDVPEGKGKVT-FPSAA---RRMDTLNDLLAA-------SDVISL 224 (632)
Q Consensus 162 GktVGIIGlG~---IG~~vA~~LkafG-m~V~--~~dr~~~~~~~~-~~~g~---~~~~sL~eLL~~-------ADVV~l 224 (632)
-.+|||||+|. ||+..+..++..+ ++|+ ++|++....+.. ...++ ..+.++++++.. .|+|++
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I 116 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI 116 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence 35799999999 9999888887665 6775 568875432211 11133 456899999986 899999
Q ss_pred ccCCChh
Q 006758 225 HCAVTDE 231 (632)
Q Consensus 225 ~lPlT~~ 231 (632)
++|....
T Consensus 117 ~tp~~~H 123 (417)
T 3v5n_A 117 VTPNHVH 123 (417)
T ss_dssp CSCTTSH
T ss_pred CCCcHHH
Confidence 9997543
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.067 Score=51.81 Aligned_cols=37 Identities=16% Similarity=0.073 Sum_probs=32.5
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.|+++.|.|. |.||+.+|+.|...|++|++.+++...
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~ 39 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND 39 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 5788999985 789999999999999999999987644
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.11 Score=48.76 Aligned_cols=68 Identities=13% Similarity=-0.099 Sum_probs=46.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCCcc---cccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGKVT---FPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~---~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
.+++|.|.| .|.||+.+++.|...|. +|.+.+|+....... .........++.+++ +|+|+.+...+.
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~~ 77 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTTI 77 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCCH
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh--hcEEEECeeecc
Confidence 468899999 79999999999999998 999999876431100 000111112333444 899999887654
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.14 Score=57.99 Aligned_cols=130 Identities=14% Similarity=0.149 Sum_probs=84.4
Q ss_pred CcEEEEcCCC-ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHh
Q 006758 104 GLRLIHVDTS-RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSL 182 (632)
Q Consensus 104 GI~VtNvpg~-na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~Lk 182 (632)
+-++++-... .....|+.+.-+-|.+.|- .-|.. .+...|++++|.|||.|.+|..+|+.|.
T Consensus 284 ~~~~~~l~~~~dp~~la~~~~~Lnlklm~w-----------Rllp~------~g~ekL~~arVLIVGaGGLGs~vA~~La 346 (615)
T 4gsl_A 284 APRVVDLSSLLDPLKIADQSVDLNLKLMKW-----------RILPD------LNLDIIKNTKVLLLGAGTLGCYVSRALI 346 (615)
T ss_dssp CCEEEECHHHHCHHHHHHHHHHHHHHHHHH-----------HTCTT------CCHHHHHTCEEEEECCSHHHHHHHHHHH
T ss_pred ceeEEeccccCCHHHHHhhhhhhhhHHHHH-----------hhcch------hhHHHHhCCeEEEECCCHHHHHHHHHHH
Confidence 4455554333 6678888888877766542 12221 1234689999999999999999999999
Q ss_pred hCCC-EEEEECCCCCCCC---cc----------------------cccC--cee---------------------cCCHH
Q 006758 183 SFKM-SVLYFDVPEGKGK---VT----------------------FPSA--ARR---------------------MDTLN 213 (632)
Q Consensus 183 afGm-~V~~~dr~~~~~~---~~----------------------~~~g--~~~---------------------~~sL~ 213 (632)
+.|+ ++.++|...-... .. .... +.. .+.+.
T Consensus 347 ~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~ 426 (615)
T 4gsl_A 347 AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLR 426 (615)
T ss_dssp HTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHH
T ss_pred HcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHH
Confidence 9998 8999997642110 00 0000 000 11356
Q ss_pred HHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 214 eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
+++..+|+|+.|+- +.+++.+++...... +..+|+.+
T Consensus 427 ~ll~~~DlVvd~tD-n~~tR~~ln~~c~~~---~~PlI~aa 463 (615)
T 4gsl_A 427 ALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA 463 (615)
T ss_dssp HHHHHCSEEEECCS-SGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred HHhhcCCEEEecCC-CHHHHHHHHHHHHHc---CCeEEEEE
Confidence 77889999988764 567888888766543 44567754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.03 Score=57.57 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=55.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee---c--CCHHHHh----ccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M--DTLNDLL----AASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~---~--~sL~eLL----~~ADVV~l~lPlT~~ 231 (632)
.|.+|.|+|.|.||...++.++.+|++|++.+++....+.....++.. . .++.+.+ ...|+|+.++...+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~- 244 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK- 244 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH-
Confidence 688999999999999999999999999999988754332111112111 1 1222222 24677776654311
Q ss_pred hHhhccHHHHhccCCCcEEEEcC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvg 254 (632)
+ + ...+..++++..+|.+|
T Consensus 245 ~---~-~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 245 A---F-SQAIGMVRRGGTIALNG 263 (340)
T ss_dssp H---H-HHHHHHEEEEEEEEECS
T ss_pred H---H-HHHHHHhccCCEEEEeC
Confidence 1 1 34556667777777765
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.033 Score=57.60 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=54.4
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee---c-CCHHH----Hhc--cCCEEEEccCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M-DTLND----LLA--ASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~---~-~sL~e----LL~--~ADVV~l~lPlT 229 (632)
.|.+|.|+|. |.||..+++.++.+|++|++.+++....+.....++.. . .++.+ +.. ..|+|+.++...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~ 238 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP 238 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence 6899999998 99999999999999999999998754332111111111 0 12221 111 367777766531
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcC
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.-...+..|+++..+|.+|
T Consensus 239 ------~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 239 ------AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ------CHHHHHHTEEEEEEEEEC-
T ss_pred ------HHHHHHHhhcCCCEEEEEE
Confidence 1234566667777777765
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.22 Score=51.38 Aligned_cols=106 Identities=11% Similarity=0.058 Sum_probs=67.8
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCE-EEEECCCCCCCCcccccCceecCCHHHHhc--c-CCEEEEccCCChhhHhhc
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKMS-VLYFDVPEGKGKVTFPSAARRMDTLNDLLA--A-SDVISLHCAVTDETIQII 236 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm~-V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~-ADVV~l~lPlT~~T~~lI 236 (632)
..++.|+|. |++|+.+++.+...|++ |..++|... .. . ..+...+.+++++.. . .|++++++|- +.+..++
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~-g~-~-i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v 88 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKG-GS-E-VHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAV 88 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-TC-E-ETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCC-Cc-e-ECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHH
Confidence 345777798 99999999999988998 345665432 11 1 135666789999987 5 9999999996 3344444
Q ss_pred cHHHHhccCCCcEEEEcCCC-hhhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSS-QLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG-~iVDe~AL~~AL~sg~I~ 274 (632)
. +.++ ..-.. +|.++.| ...+..+|.++.++..+.
T Consensus 89 ~-ea~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~ 124 (297)
T 2yv2_A 89 Y-EAVD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGAT 124 (297)
T ss_dssp H-HHHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred H-HHHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 3 2333 22222 3334433 224566788888876553
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.071 Score=54.42 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=50.2
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccCc-------eecCCHHHHhccC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAA-------RRMDTLNDLLAAS 219 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g~-------~~~~sL~eLL~~A 219 (632)
.+.+++|.|.|. |.||+.+++.|...|++|+++++......... ..++ ....++.+++..+
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 103 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV 103 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence 467899999998 99999999999999999999998653210000 0111 1123456778888
Q ss_pred CEEEEccCCC
Q 006758 220 DVISLHCAVT 229 (632)
Q Consensus 220 DVV~l~lPlT 229 (632)
|+|+.+....
T Consensus 104 d~vih~A~~~ 113 (352)
T 1sb8_A 104 DYVLHQAALG 113 (352)
T ss_dssp SEEEECCSCC
T ss_pred CEEEECCccc
Confidence 9988887653
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.081 Score=50.58 Aligned_cols=69 Identities=9% Similarity=0.044 Sum_probs=49.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhC--CCEEEEECCCCCCCC------cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSF--KMSVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+++|.|.| .|.||+.+++.|... |++|++.+|+..... ..+........++.+++...|+|+.+....
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~ 80 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV 80 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEecccc
Confidence 578999999 699999999999988 899999998742211 001111122345678888999999887643
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.053 Score=55.94 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=46.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCCC-CCCcc------cccCceecCCHHHHhcc--CCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLY-FDVPEG-KGKVT------FPSAARRMDTLNDLLAA--SDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~-~dr~~~-~~~~~------~~~g~~~~~sL~eLL~~--ADVV~l~lPl 228 (632)
.+|||||+|.||...++.+ .-+++|.+ +|++.. ..+.. +..+...+.++++++.+ .|+|+++.|.
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~ 77 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVF 77 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSH
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999999777766 55788765 677652 22211 11123567899999975 8999999885
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.12 Score=56.40 Aligned_cols=65 Identities=23% Similarity=0.193 Sum_probs=48.9
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+++|.|.| .|.||+.+++.|...|.+|++++|+...... .... ..+.+.+++..+|+|+.+...+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~-v~~d--~~~~~~~~l~~~D~Vih~A~~~ 212 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGK-RFWD--PLNPASDLLDGADVLVHLAGEP 212 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTC-EECC--TTSCCTTTTTTCSEEEECCCC-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccc-eeec--ccchhHHhcCCCCEEEECCCCc
Confidence 78999999 6999999999999999999999988654321 1110 1134567788999999877653
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.13 Score=52.80 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=57.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC--EEEEECC--CCCCCCc---cc------ccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKM--SVLYFDV--PEGKGKV---TF------PSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm--~V~~~dr--~~~~~~~---~~------~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|+| .|.+|..++..|...|. ++..+|+ .....+. .+ ........+-.+.++.||+|+++...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 3799999 99999999999886665 7888998 4321110 00 00001101226678999999999865
Q ss_pred Chh---------------hHhhccHHHHhccCCCcEEEEcCCChhhcH
Q 006758 229 TDE---------------TIQIINAECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 229 T~~---------------T~~lI~~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
... ++.++ +.+....|.+++++++ ..+|.
T Consensus 81 ~~~~g~~r~dl~~~N~~i~~~i~--~~i~~~~p~~~viv~S--NPv~~ 124 (303)
T 1o6z_A 81 PRQPGQTRIDLAGDNAPIMEDIQ--SSLDEHNDDYISLTTS--NPVDL 124 (303)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHH--HHHHTTCSCCEEEECC--SSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH--HHHHHHCCCcEEEEeC--ChHHH
Confidence 321 11111 2333446788999864 34544
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.067 Score=55.24 Aligned_cols=34 Identities=15% Similarity=-0.046 Sum_probs=31.0
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
++|.|.|. |.||+.+++.|...|++|++++|...
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~ 63 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS 63 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence 68999997 99999999999999999999998754
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.082 Score=52.72 Aligned_cols=73 Identities=19% Similarity=0.176 Sum_probs=47.2
Q ss_pred ccccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--ccCceecCCHHHH-------hccCCEEEEc
Q 006758 156 GMRRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF--PSAARRMDTLNDL-------LAASDVISLH 225 (632)
Q Consensus 156 ~~~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--~~g~~~~~sL~eL-------L~~ADVV~l~ 225 (632)
.|..+.|+++.|.|. |.||+.+|+.|...|++|++.+++........ ........+++.+ +...|+|+.+
T Consensus 22 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnn 101 (266)
T 3uxy_A 22 SMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNN 101 (266)
T ss_dssp ----CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred hhhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 356789999999987 67999999999999999999998764433111 1111111122222 2367999987
Q ss_pred cCC
Q 006758 226 CAV 228 (632)
Q Consensus 226 lPl 228 (632)
.-.
T Consensus 102 Ag~ 104 (266)
T 3uxy_A 102 AGV 104 (266)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.11 Score=52.89 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=48.2
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccc-----ccCc-------eecCCHHHHhcc--CCEEEE
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTF-----PSAA-------RRMDTLNDLLAA--SDVISL 224 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----~~g~-------~~~~sL~eLL~~--ADVV~l 224 (632)
+.+++|.|.| .|.||+.+++.|...|++|+++++......... ...+ ....++.+++.. .|+|+.
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 86 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 86 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence 5789999999 599999999999999999999998764322100 0011 112235566665 799888
Q ss_pred ccCC
Q 006758 225 HCAV 228 (632)
Q Consensus 225 ~lPl 228 (632)
+...
T Consensus 87 ~A~~ 90 (357)
T 1rkx_A 87 MAAQ 90 (357)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.031 Score=57.20 Aligned_cols=35 Identities=9% Similarity=-0.051 Sum_probs=32.5
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|++|.|+|. |.||..+++.++..|++|++.+++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 180 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD 180 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6899999998 9999999999999999999998764
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.11 Score=56.40 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=65.6
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEE-ECCCCC-------CCC--ccc--ccCc------------eecCCHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLY-FDVPEG-------KGK--VTF--PSAA------------RRMDTLND 214 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~-~dr~~~-------~~~--~~~--~~g~------------~~~~sL~e 214 (632)
++.|++|.|.|+|++|+.+|+.|..+|++|+. .|.+.. ..+ ..+ ..+. ..+.+.++
T Consensus 207 ~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~ 286 (421)
T 1v9l_A 207 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA 286 (421)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchh
Confidence 58999999999999999999999999999984 444210 000 000 0011 11112244
Q ss_pred Hhc-cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 215 LLA-ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 215 LL~-~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++. .|||++-|. +.+.|+.+....++ -.+++--+-+.+- .+| .+.|.+..|.
T Consensus 287 ~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~ 339 (421)
T 1v9l_A 287 IFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPTT-PEA-ERILYERGVV 339 (421)
T ss_dssp GGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCBC-HHH-HHHHHTTTCE
T ss_pred hhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcCC-HHH-HHHHHHCCCE
Confidence 433 578887765 23556666666664 4577777777764 333 3455655554
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.1 Score=52.02 Aligned_cols=68 Identities=21% Similarity=0.100 Sum_probs=47.5
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC--c-----c-cccCc-------eecCCHHHHhccCCEEEEc
Q 006758 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK--V-----T-FPSAA-------RRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~--~-----~-~~~g~-------~~~~sL~eLL~~ADVV~l~ 225 (632)
.++|.|+| .|.||+.+++.|...|.+|.+.+|+..... . . ...++ ...+++.+++..+|+|+.+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 46799999 599999999999999999999998753210 0 0 00111 1223566778888988888
Q ss_pred cCCC
Q 006758 226 CAVT 229 (632)
Q Consensus 226 lPlT 229 (632)
.+..
T Consensus 84 a~~~ 87 (313)
T 1qyd_A 84 LAGG 87 (313)
T ss_dssp CCCS
T ss_pred Cccc
Confidence 7653
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.036 Score=58.10 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=57.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee-----cCCHHHHhc--------cCCEEEEcc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLA--------ASDVISLHC 226 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~--------~ADVV~l~l 226 (632)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++....+.....|+.. ..++.+.+. ..|+|+-++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~ 261 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA 261 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence 58899999999999999999999999 8999988754332111112211 122333222 367777776
Q ss_pred CCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 227 AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.. +.+ + ...+..++++..+|.+|-
T Consensus 262 G~-~~~---~-~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 262 GV-AET---V-KQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp CC-HHH---H-HHHHHHEEEEEEEEECSC
T ss_pred CC-HHH---H-HHHHHHhccCCEEEEEec
Confidence 53 111 1 345566777777777663
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.23 Score=52.47 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=63.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
.+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+ ..| +....+++ .++++|||.+-+
T Consensus 172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~ 250 (339)
T 4a8t_A 172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 250 (339)
T ss_dssp CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence 378999999996 67888888888999999999998653222111 012 33457899 999999999733
Q ss_pred --CCC------hh----hH--hhccHHHHhccCCCcEEEEcC
Q 006758 227 --AVT------DE----TI--QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 227 --PlT------~~----T~--~lI~~~~L~~MK~GAvLINvg 254 (632)
... .+ .. --|+.+.++.+|++++|.-+.
T Consensus 251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL 292 (339)
T 4a8t_A 251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL 292 (339)
T ss_dssp SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence 111 11 00 224666666667777666654
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.077 Score=55.75 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=61.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC---------CCEEE-EECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 163 LVLGIVGRSASARALATRSLSF---------KMSVL-YFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf---------Gm~V~-~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
.+|||||+|.||+.+++.+... +++|. ++|++..... .+.. ...+.++++++ +.|+|+.|+|.....
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~-~~~~-~~~~~d~~~ll-~iDvVve~t~~~~~a 80 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR-AIPQ-ELLRAEPFDLL-EADLVVEAMGGVEAP 80 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC-SSCG-GGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh-ccCc-ccccCCHHHHh-CCCEEEECCCCcHHH
Confidence 4699999999999999988765 46664 4466643221 2221 22456888888 999999999864321
Q ss_pred HhhccHHHHhccCCCcEEEEcCCChh-hcHHHHHHHHHcC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDG 271 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~i-VDe~AL~~AL~sg 271 (632)
..+ ....|+.|.-+|-..=..+ ..-.+|.++.+++
T Consensus 81 ~~~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 81 LRL----VLPALEAGIPLITANKALLAEAWESLRPFAEEG 116 (332)
T ss_dssp HHH----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred HHH----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence 212 1234445544444211122 2345566666655
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.028 Score=58.08 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=33.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhC--CCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSF--KMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~Lkaf--Gm~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||...++.++.+ |++|++.+++..
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~ 207 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKK 207 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 688999999999999999999998 999999998753
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.059 Score=51.83 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=60.3
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHh---ccCCEEEEccCCC-h---
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL---AASDVISLHCAVT-D--- 230 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL---~~ADVV~l~lPlT-~--- 230 (632)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+++.... ....+++++++ ...|+|+.+.-.. +
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D-------~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~ 75 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLD-------ISDEKSVYHYFETIGAFDHLIVTAGSYAPAGK 75 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCC-------TTCHHHHHHHHHHHCSEEEEEECCCCCCCCSC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccC-------CCCHHHHHHHHHHhCCCCEEEECCCCCCCCCC
Confidence 468999999996 7899999999999999999999875411 11112334443 4679999876543 1
Q ss_pred ------h-hH-----hh-----ccHHHHhccCCCcEEEEcCCC
Q 006758 231 ------E-TI-----QI-----INAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 231 ------~-T~-----~l-----I~~~~L~~MK~GAvLINvgRG 256 (632)
+ -. ++ +....+..|+++..|||+++.
T Consensus 76 ~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~ 118 (223)
T 3uce_A 76 VVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM 118 (223)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred cccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence 1 00 11 123456677777788998874
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.15 Score=51.57 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=33.6
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.++.|+++.|.|. |.||+.+|+.|...|++|++.++.
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~ 82 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP 82 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999996 689999999999999999999876
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.091 Score=54.34 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=61.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------cccccCc-eecCCHHHHhccCCEEEEccCC-
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSAA-RRMDTLNDLLAASDVISLHCAV- 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~----------~~~~~g~-~~~~sL~eLL~~ADVV~l~lPl- 228 (632)
++|+|||.|.||+.+|-.|+..+. ++..||......+ ....... ....+-.+.+++||+|+++.-.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p 80 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence 479999999999999998875544 8999998652111 0011111 1112234678999999998743
Q ss_pred -Chh-h--------Hhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHH
Q 006758 229 -TDE-T--------IQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 229 -T~~-T--------~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~ 265 (632)
.|. | ..++- .+.+..-.|+++++.++. .+|.-..+
T Consensus 81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN--Pvd~~t~i 127 (294)
T 2x0j_A 81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMTYI 127 (294)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC--cchhhHHh
Confidence 221 2 22221 123444567889888865 56655544
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.2 Score=49.62 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=48.0
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc--ccccCceecCCHHHHhc-------cCCEEEEccC
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV--TFPSAARRMDTLNDLLA-------ASDVISLHCA 227 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~--~~~~g~~~~~sL~eLL~-------~ADVV~l~lP 227 (632)
.++.|+++.|.| .|.||+.+|+.|...|++|++.+++...... .+........++++++. ..|+|+.+..
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag 83 (264)
T 2dtx_A 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAG 83 (264)
T ss_dssp GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 357899999998 4789999999999999999999987543210 01111111223344444 6899998765
Q ss_pred C
Q 006758 228 V 228 (632)
Q Consensus 228 l 228 (632)
.
T Consensus 84 ~ 84 (264)
T 2dtx_A 84 I 84 (264)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.15 Score=52.38 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=33.8
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhh--CCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLS--FKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~Lka--fGm~V~~~dr~~~ 196 (632)
++.+++|.|.| .|-||+.+++.|.. .|++|+++++...
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~ 47 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS 47 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence 47899999995 59999999999998 8999999998653
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.095 Score=52.04 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=34.9
Q ss_pred ccccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 158 RRCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 158 ~~L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+|+||++.|-|.+ -||+++|+.|...|++|++.+++..
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER 43 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46899999999974 5999999999999999999998753
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.19 Score=52.26 Aligned_cols=101 Identities=15% Similarity=0.237 Sum_probs=64.1
Q ss_pred cEEEEEe-CChhhHHHHHHHhh---CCCEEEEECCCCC-CCC----cccccC--ceec--CCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVG-RSASARALATRSLS---FKMSVLYFDVPEG-KGK----VTFPSA--ARRM--DTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka---fGm~V~~~dr~~~-~~~----~~~~~g--~~~~--~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+||| .|.||..+|..|.. +.-++..+|.... ... ...+.. ...+ .+..+.+++||+|+++.+..
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~ 80 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence 4799999 99999999998864 5569999998751 111 001111 1111 25678899999999998643
Q ss_pred hh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHH
Q 006758 230 DE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 230 ~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~ 265 (632)
.. +..++- .+.+....|.+++|+++ ..+|.-..+
T Consensus 81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~ 127 (312)
T 3hhp_A 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI 127 (312)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence 21 222221 12334446899999996 566665544
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.1 Score=54.10 Aligned_cols=71 Identities=17% Similarity=0.095 Sum_probs=51.6
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc--ccCc-------eecCCHHHHhccCCEEEEccC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFK-MSVLYFDVPEGKGKVTF--PSAA-------RRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~--~~g~-------~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+++++|.|.|. |.||+.+++.|...| .+|+++++......... ..++ ....++.+++..+|+|+.+..
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~ 108 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT 108 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence 578999999995 999999999999999 99999998754321111 1111 112245677888999998876
Q ss_pred CC
Q 006758 228 VT 229 (632)
Q Consensus 228 lT 229 (632)
..
T Consensus 109 ~~ 110 (377)
T 2q1s_A 109 YH 110 (377)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.08 Score=52.71 Aligned_cols=66 Identities=11% Similarity=-0.024 Sum_probs=47.8
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCC-CEEEEECCCCCCCC-cc-cccC-------ceecCCHHHHhccCCEEEEccC
Q 006758 162 GLVLGIVGR-SASARALATRSLSFK-MSVLYFDVPEGKGK-VT-FPSA-------ARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG-m~V~~~dr~~~~~~-~~-~~~g-------~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.++|.|.|. |.||+.+++.|...| .+|.+.+|+..... .. ...+ .....++.+++..+|+|+.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 578999997 999999999999888 99999998764321 00 0011 1122356778889999998875
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.2 Score=50.12 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=47.8
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT 229 (632)
.+++|.|.| .|.||+.+++.|...|.+|+++++.... + .....++.+++. .+|+|+.+....
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-D------~~d~~~~~~~~~~~~~d~vih~a~~~ 66 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-N------LLDSRAVHDFFASERIDQVYLAAAKV 66 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-C------TTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC-C------ccCHHHHHHHHHhcCCCEEEEcCeec
Confidence 357899999 5999999999999999999998876421 1 112346777888 899999887654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.12 Score=57.06 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=61.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---ccCceecCCHHHH-hccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF---PSAARRMDTLNDL-LAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---~~g~~~~~sL~eL-L~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
+++.|+|+|.+|+.+|+.|...|.+|++.|.++....... ...+.....|.++ +.++|.|+++.+.. ..+++-.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d--~~ni~~~ 426 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDD--STNIFLT 426 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCH--HHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCc--hHHHHHH
Confidence 7899999999999999999999999999998875543211 0011122334443 78899999998864 3455556
Q ss_pred HHHhccCCCcEEEE
Q 006758 239 ECLQHIKPGAFLVN 252 (632)
Q Consensus 239 ~~L~~MK~GAvLIN 252 (632)
...+.+.+...+|-
T Consensus 427 ~~ak~l~~~~~iia 440 (565)
T 4gx0_A 427 LACRHLHSHIRIVA 440 (565)
T ss_dssp HHHHHHCSSSEEEE
T ss_pred HHHHHHCCCCEEEE
Confidence 67777777744443
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.19 Score=51.06 Aligned_cols=71 Identities=14% Similarity=-0.018 Sum_probs=46.3
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-----cCc--eecCCHHHHhccCCEEEEccCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFP-----SAA--RRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-----~g~--~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+.+++|.|.|. |.||+.+++.|...|++|+++++.......... ..+ ...+-.+..+..+|+|+.+....
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~ 102 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPA 102 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCC
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECcccc
Confidence 468899999997 999999999999999999999986432110000 011 11222334566789888776543
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.18 Score=50.90 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=48.1
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--------------ccCceecCCHHHHhc--cCCEEE
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTF--------------PSAARRMDTLNDLLA--ASDVIS 223 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--------------~~g~~~~~sL~eLL~--~ADVV~ 223 (632)
.+++|.|.| .|-||+.+++.|...|++|++.++......... ........++.+++. ..|+|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 467899998 599999999999999999999998764332100 001112234566676 789888
Q ss_pred EccCCC
Q 006758 224 LHCAVT 229 (632)
Q Consensus 224 l~lPlT 229 (632)
.+....
T Consensus 84 h~A~~~ 89 (341)
T 3enk_A 84 HFAALK 89 (341)
T ss_dssp ECCCCC
T ss_pred ECcccc
Confidence 877554
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.031 Score=59.49 Aligned_cols=67 Identities=7% Similarity=0.087 Sum_probs=48.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC--CCEEE-EECCCCCCCC-cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSF--KMSVL-YFDVPEGKGK-VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf--Gm~V~-~~dr~~~~~~-~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
-.+|||||+| +|+.-++.++.. ++++. ++|++..... .....++..+.++++++.+.|+|++++|..
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~ 77 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST 77 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence 4579999999 799877777665 67766 5687764332 111235556789999999999999999863
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.046 Score=56.28 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=34.0
Q ss_pred cCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCC
Q 006758 161 RGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKG 198 (632)
Q Consensus 161 ~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~ 198 (632)
.|.+|.|+|.| .||..+++.++.+|++|++.+++....
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~ 182 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT 182 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 68999999998 999999999999999999999876543
|
| >4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.81 Score=48.58 Aligned_cols=96 Identities=9% Similarity=0.092 Sum_probs=66.6
Q ss_pred cccCcEEEEEeC--ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccCceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGR--SASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGl--G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+.|.+|+|||= ++++.+.+..+..||++|.++.|..-..... ....+....++++.++++|||..-
T Consensus 178 ~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~ 257 (358)
T 4h31_A 178 ALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTD 257 (358)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEE
Confidence 478999999995 4799999999999999999999864221100 011233467899999999999853
Q ss_pred cCC----Chhh---------HhhccHHHHhcc-CCCcEEEEcC
Q 006758 226 CAV----TDET---------IQIINAECLQHI-KPGAFLVNTG 254 (632)
Q Consensus 226 lPl----T~~T---------~~lI~~~~L~~M-K~GAvLINvg 254 (632)
.=. .++. .--|+.+.++.+ ||+++|.-+.
T Consensus 258 ~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L 300 (358)
T 4h31_A 258 VWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL 300 (358)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred EEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence 321 1111 112577888764 7888888775
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.32 E-value=0.11 Score=54.77 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=25.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEEC
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYFD 192 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~d 192 (632)
.+|||+|+|.||+.+++.|... +++|.++.
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~ 34 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVN 34 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence 3799999999999999998865 68877665
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.11 Score=50.75 Aligned_cols=70 Identities=13% Similarity=0.073 Sum_probs=46.9
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--cccCceecCCHHHHhc-------cCCEEEEccCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT--FPSAARRMDTLNDLLA-------ASDVISLHCAV 228 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~--~~~g~~~~~sL~eLL~-------~ADVV~l~lPl 228 (632)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+++....... +.......+++++++. ..|+|+.+...
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 91 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL 91 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 478999999985 7999999999999999999999876433211 1111111223334443 45888887654
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.12 Score=50.22 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=59.7
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---cccCceecCCHHHHhc---------cCCEEEEcc
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT---FPSAARRMDTLNDLLA---------ASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~---~~~g~~~~~sL~eLL~---------~ADVV~l~l 226 (632)
..|+++.|.|. |.||+.+|+.|...|++|++.+|+....... +........++++++. ..|+|+.+.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~A 84 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA 84 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcc
Confidence 46889999985 7899999999999999999999876433210 0011111223334433 679998876
Q ss_pred CCCh-------hh----Hhh----------ccHHHHhccCCCcEEEEcCCCh
Q 006758 227 AVTD-------ET----IQI----------INAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 227 PlT~-------~T----~~l----------I~~~~L~~MK~GAvLINvgRG~ 257 (632)
-... .+ ..+ +....+..|+++..|||+++..
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~ 136 (241)
T 1dhr_A 85 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA 136 (241)
T ss_dssp CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred cccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence 4321 11 011 1233455666567888887753
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.12 Score=54.07 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=46.4
Q ss_pred cEEEEEe-CChhhHH-HH----HHHhhCC-CEE----------EEECCCCCCCCcc-cccCc-eecCCHHHHhcc--CCE
Q 006758 163 LVLGIVG-RSASARA-LA----TRSLSFK-MSV----------LYFDVPEGKGKVT-FPSAA-RRMDTLNDLLAA--SDV 221 (632)
Q Consensus 163 ktVGIIG-lG~IG~~-vA----~~LkafG-m~V----------~~~dr~~~~~~~~-~~~g~-~~~~sL~eLL~~--ADV 221 (632)
.+||||| +|.||+. .+ ..++..+ +.+ .++|++....... ...+. ..+.++++++.+ .|+
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~ 86 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM 86 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence 5799999 9999998 66 6565443 332 4888876433211 11233 346899999976 899
Q ss_pred EEEccCCCh
Q 006758 222 ISLHCAVTD 230 (632)
Q Consensus 222 V~l~lPlT~ 230 (632)
|+++.|...
T Consensus 87 V~i~tp~~~ 95 (383)
T 3oqb_A 87 FFDAATTQA 95 (383)
T ss_dssp EEECSCSSS
T ss_pred EEECCCchH
Confidence 999999644
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.17 Score=55.52 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=68.9
Q ss_pred cccCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC-cccc----------cCceecCCHHHHhc
Q 006758 159 RCRGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK-VTFP----------SAARRMDTLNDLLA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~----------~g~~~~~sL~eLL~ 217 (632)
.+.|++|+|+|+- .-...|++.|...|++|.+|||...... ..+. .......++.+.+.
T Consensus 325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (478)
T 2y0c_A 325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR 404 (478)
T ss_dssp CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTT
T ss_pred cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHh
Confidence 4689999999974 4568899999999999999999853211 1111 02344567899999
Q ss_pred cCCEEEEccCCChhhHhhccHHHH-hccCCCcEEEEcCCChhhcHHH
Q 006758 218 ASDVISLHCAVTDETIQIINAECL-QHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L-~~MK~GAvLINvgRG~iVDe~A 263 (632)
.||+|+++.... +-+ -++-+.+ ..|+ +.+||++ |+ +.|.+.
T Consensus 405 ~ad~~vi~t~~~-~f~-~~~~~~~~~~~~-~~~i~D~-r~-~~~~~~ 446 (478)
T 2y0c_A 405 DADALVIVTEWK-IFK-SPDFVALGRLWK-TPVIFDG-RN-LYEPET 446 (478)
T ss_dssp TCSEEEECSCCG-GGG-SCCHHHHHTTCS-SCEEEES-SC-CSCHHH
T ss_pred CCCEEEEecCCh-Hhh-ccCHHHHHhhcC-CCEEEEC-CC-CCCHHH
Confidence 999999998873 332 2344444 4555 5788887 43 455543
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.1 Score=52.20 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=41.1
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCC
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPl 228 (632)
+++|.|.|. |.||+.+++.|...|++|++.+++..... ..........++.+++.. .|+|+.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~ 70 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAAE 70 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC--
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence 678999997 99999999999999999999997643210 111112223456777775 8999888754
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.077 Score=55.99 Aligned_cols=87 Identities=10% Similarity=-0.048 Sum_probs=50.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEEC-CCCCCCC--cccc------------------c-CceecCCHHHHhccC
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYFD-VPEGKGK--VTFP------------------S-AARRMDTLNDLLAAS 219 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~d-r~~~~~~--~~~~------------------~-g~~~~~sL~eLL~~A 219 (632)
.+|||+|+|.||+.+++.|... +++|.++. ....... ..+. . .........+++..+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v 82 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA 82 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence 3799999999999999998765 68877664 3211000 0000 0 000012345666799
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
|+|+.|+|..-... . .+ -..++.|..+|..
T Consensus 83 DiV~eatg~~~s~~-~--a~-~~~l~aG~~VI~s 112 (343)
T 2yyy_A 83 DIVVDGAPKKIGKQ-N--LE-NIYKPHKVKAILQ 112 (343)
T ss_dssp SEEEECCCTTHHHH-H--HH-HTTTTTTCEEEEC
T ss_pred CEEEECCCccccHH-H--HH-HHHHHCCCEEEEC
Confidence 99999988533111 1 11 2456667766653
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.095 Score=51.40 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=44.7
Q ss_pred EEEEEeC-ChhhHHHHHHHhhC--CCEEEEECCCCCCCCcccccC-------ceecCCHHHHhccCCEEEEccCC
Q 006758 164 VLGIVGR-SASARALATRSLSF--KMSVLYFDVPEGKGKVTFPSA-------ARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 164 tVGIIGl-G~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~~~~~~g-------~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
+|.|.|. |.||+.+++.|... |++|.+.+|+..........+ .....++.+++..+|+|+.+...
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4778886 99999999999988 999999998754321000011 11223567788899999887654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.17 Score=50.01 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=45.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT 229 (632)
++|.|.|. |.||+.+++.|. -|.+|++++|..... ........++.+++.. +|+|+.+....
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~----~~D~~d~~~~~~~~~~~~~d~vih~a~~~ 65 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEF----CGDFSNPKGVAETVRKLRPDVIVNAAAHT 65 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSS----CCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccc----cccCCCHHHHHHHHHhcCCCEEEECcccC
Confidence 36889986 999999999999 799999999875211 1112223456777876 99999887643
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.15 Score=51.34 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=45.5
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCC--CEEEEECCCCCCC--Cc--cc--ccCc-------eecCCHHHHhccCCEEEE
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFK--MSVLYFDVPEGKG--KV--TF--PSAA-------RRMDTLNDLLAASDVISL 224 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafG--m~V~~~dr~~~~~--~~--~~--~~g~-------~~~~sL~eLL~~ADVV~l 224 (632)
.+++|.|.| .|.||+.+++.|...| ++|++.++..... .. .. ...+ ....++.+++..+|+|+.
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH 81 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence 356899999 5999999999998775 8999998764211 10 00 0011 112235567778899988
Q ss_pred ccCCC
Q 006758 225 HCAVT 229 (632)
Q Consensus 225 ~lPlT 229 (632)
+....
T Consensus 82 ~A~~~ 86 (336)
T 2hun_A 82 LAAES 86 (336)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 77654
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.087 Score=55.98 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=54.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEECC-CCCCC--------C---ccccc--------------C--ceecCCHH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYFDV-PEGKG--------K---VTFPS--------------A--ARRMDTLN 213 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~dr-~~~~~--------~---~~~~~--------------g--~~~~~sL~ 213 (632)
.+|||+|+|.||+.+.+.|... .++|.+.+. ..... + ..+.. . .....+++
T Consensus 18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 97 (354)
T 3cps_A 18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA 97 (354)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence 4899999999999999998876 788877753 32110 0 00000 0 01112445
Q ss_pred HHh---ccCCEEEEccCCChhhHhhccHHHHhccCCCc--EEEEcCC
Q 006758 214 DLL---AASDVISLHCAVTDETIQIINAECLQHIKPGA--FLVNTGS 255 (632)
Q Consensus 214 eLL---~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GA--vLINvgR 255 (632)
++. ..+|+|+.|+|.-... +..-..++.|+ ++|+.+.
T Consensus 98 ~i~w~~~~vDvV~eatg~~~s~-----e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 98 EIPWGASGAQIVCESTGVFTTE-----EKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GCCHHHHTCCEEEECSSSCCSH-----HHHGGGGTTTCSEEEESSCC
T ss_pred HCCcccCCCCEEEECCCchhhH-----HHHHHHHHcCCcEEEEeCCC
Confidence 542 5799999999953221 12224467788 9998865
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.11 Score=54.72 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=57.2
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCC---CCCCc---ccc--cCc--eecC---CHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDVPE---GKGKV---TFP--SAA--RRMD---TLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~---~~~~~---~~~--~g~--~~~~---sL~eLL~~ADVV~l~lP 227 (632)
.+|+|+| .|.+|+.+.++|... .+++..+..+. ..++. .++ .+. ..+. +.++++.++|+|++|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 5799999 699999999999874 56777764333 22221 011 111 1111 45556589999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCChhh
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLL 259 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~iV 259 (632)
... +..+. . ..++.|+.+|+.+.---.
T Consensus 85 ~~~-s~~~~-~---~~~~~g~~vIDlSa~fR~ 111 (337)
T 3dr3_A 85 HEV-SHDLA-P---QFLEAGCVVFDLSGAFRV 111 (337)
T ss_dssp HHH-HHHHH-H---HHHHTTCEEEECSSTTSS
T ss_pred hHH-HHHHH-H---HHHHCCCEEEEcCCcccc
Confidence 422 22221 1 224679999999875544
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=93.13 E-value=0.054 Score=53.30 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=46.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC--CCEEEEECCCCCCCCcccccC-------ceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGR-SASARALATRSLSF--KMSVLYFDVPEGKGKVTFPSA-------ARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~~~~~~g-------~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|.|.|. |.||+.+++.|... |++|.+++|+..........+ .....++.+++..+|+|+.+...
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 76 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP 76 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence 46888886 99999999999988 999999998754321000011 11223567788899999887654
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.16 Score=52.43 Aligned_cols=110 Identities=13% Similarity=0.010 Sum_probs=64.8
Q ss_pred CcEEEEEeCChhhHH-HHHHHhhCCCEEEEECCCCCCCC-ccc-ccCceec--CCHHHHh-ccCCEEEEc--cCC-Chhh
Q 006758 162 GLVLGIVGRSASARA-LATRSLSFKMSVLYFDVPEGKGK-VTF-PSAARRM--DTLNDLL-AASDVISLH--CAV-TDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~-vA~~LkafGm~V~~~dr~~~~~~-~~~-~~g~~~~--~sL~eLL-~~ADVV~l~--lPl-T~~T 232 (632)
.++|.|||.|.+|.+ +|+.|+..|++|.++|....... ..+ ..++... .+.+++. ..+|+|+.. +|. +|..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence 478999999999996 99999999999999998653211 011 1232221 2334455 578998885 332 2221
Q ss_pred -----Hh--hccH-HHHhc--cCC-CcEEEEcCCChhhcHHHHHHHHHcC
Q 006758 233 -----IQ--IINA-ECLQH--IKP-GAFLVNTGSSQLLDDCAVKQLLIDG 271 (632)
Q Consensus 233 -----~~--lI~~-~~L~~--MK~-GAvLINvgRG~iVDe~AL~~AL~sg 271 (632)
++ ++++ +.|.. ++. -.+-|--+.|+.--..-|...|+..
T Consensus 84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 133 (326)
T 3eag_A 84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA 133 (326)
T ss_dssp HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 11 2332 23332 232 2344555567776666666666653
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.09 E-value=0.046 Score=57.39 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=44.0
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEEEE-CCCCCCCC-----c---cc---c--------cCceecCCHHHHhccCCE
Q 006758 163 LVLGIVGRSASARALATRSLS-FKMSVLYF-DVPEGKGK-----V---TF---P--------SAARRMDTLNDLLAASDV 221 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fGm~V~~~-dr~~~~~~-----~---~~---~--------~g~~~~~sL~eLL~~ADV 221 (632)
.+|||+|+|.||+.+++.|.. -+++|.+. |+...... . .+ . .+.....++++++..+|+
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv 81 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence 379999999999999999886 47887665 44321100 0 00 0 000001256778889999
Q ss_pred EEEccCCCh
Q 006758 222 ISLHCAVTD 230 (632)
Q Consensus 222 V~l~lPlT~ 230 (632)
|+.|+|...
T Consensus 82 V~~atp~~~ 90 (337)
T 1cf2_P 82 VIDCTPEGI 90 (337)
T ss_dssp EEECCSTTH
T ss_pred EEECCCchh
Confidence 999999643
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=93.08 E-value=0.28 Score=52.11 Aligned_cols=95 Identities=12% Similarity=0.078 Sum_probs=61.8
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCccc---------ccC--ceecCCHHHHhccCCEEEEcc
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTF---------PSA--ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~---------~~g--~~~~~sL~eLL~~ADVV~l~l 226 (632)
.+.|.+|+|||= +++..+++..+..||++|.+..|..-.....+ ..| +....+++ .++++|||.+-+
T Consensus 150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~ 228 (355)
T 4a8p_A 150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 228 (355)
T ss_dssp CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence 378999999996 67888888889999999999998653222110 112 33457899 999999998732
Q ss_pred --CCC------hh----hH--hhccHHHHhccCCCcEEEEcC
Q 006758 227 --AVT------DE----TI--QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 227 --PlT------~~----T~--~lI~~~~L~~MK~GAvLINvg 254 (632)
... .+ .. --|+.+.++.+|++++|.-+.
T Consensus 229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL 270 (355)
T 4a8p_A 229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL 270 (355)
T ss_dssp SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence 110 11 00 124566666666666666554
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.18 Score=50.68 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=45.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc-------------ccccCceecCCHHHHhcc--CCEEEEcc
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV-------------TFPSAARRMDTLNDLLAA--SDVISLHC 226 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-------------~~~~g~~~~~sL~eLL~~--ADVV~l~l 226 (632)
++|.|.| .|.||+.+++.|...|.+|+++++....... .+........++++++.. .|+|+.+.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 81 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence 4789999 6999999999999999999999875321110 000011112345677777 89998887
Q ss_pred CCC
Q 006758 227 AVT 229 (632)
Q Consensus 227 PlT 229 (632)
...
T Consensus 82 ~~~ 84 (347)
T 1orr_A 82 GQV 84 (347)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.15 Score=51.49 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=46.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC--CCEEEEECCCCCCCC----ccc-ccCc-------eecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLSF--KMSVLYFDVPEGKGK----VTF-PSAA-------RRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf--Gm~V~~~dr~~~~~~----~~~-~~g~-------~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|.|.| .|.||+.+++.|... |++|+++++...... ... ..++ ....++.+++..+|+|+.+..
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~ 84 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA 84 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence 5799999 699999999999877 899999998642111 000 0111 112346678888999988876
Q ss_pred CC
Q 006758 228 VT 229 (632)
Q Consensus 228 lT 229 (632)
..
T Consensus 85 ~~ 86 (348)
T 1oc2_A 85 ES 86 (348)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.048 Score=55.45 Aligned_cols=87 Identities=11% Similarity=0.018 Sum_probs=55.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceec-CCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM-DTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~-~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.|.+|.|+|.|.||...++.++.+|++|++.+ +....+.....|+... .+.+++-...|+|+-++.. +. + ..
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~----~-~~ 214 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QN----A-AA 214 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hh----H-HH
Confidence 68999999999999999999999999999999 5544332222222211 1223333457888877653 11 1 34
Q ss_pred HHhccCCCcEEEEcC
Q 006758 240 CLQHIKPGAFLVNTG 254 (632)
Q Consensus 240 ~L~~MK~GAvLINvg 254 (632)
.+..++++..+|.++
T Consensus 215 ~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 215 LVPSLKANGHIICIQ 229 (315)
T ss_dssp TGGGEEEEEEEEEEC
T ss_pred HHHHhcCCCEEEEEe
Confidence 567778888888774
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.032 Score=57.67 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=45.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--------CCEEE-EECCCCCCCCcc-cccC-ceecCCHHHHhcc--CCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSF--------KMSVL-YFDVPEGKGKVT-FPSA-ARRMDTLNDLLAA--SDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--------Gm~V~-~~dr~~~~~~~~-~~~g-~~~~~sL~eLL~~--ADVV~l~lPlT 229 (632)
.+|||||+|.||+.-++.++.. +++|. ++|++....+.. ...+ ...+.+++++|.+ .|+|++++|..
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~ 86 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD 86 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence 5799999999999877766542 33544 568775432211 0112 2356899999965 79999999964
Q ss_pred h
Q 006758 230 D 230 (632)
Q Consensus 230 ~ 230 (632)
-
T Consensus 87 ~ 87 (390)
T 4h3v_A 87 S 87 (390)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.12 Score=52.66 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=44.3
Q ss_pred cEEEEEeC-ChhhHHHHHHHh-hCCCEEE-EECCCCCC--CCcc------cccCceecCCHHHHhccCCEEEEcc
Q 006758 163 LVLGIVGR-SASARALATRSL-SFKMSVL-YFDVPEGK--GKVT------FPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lk-afGm~V~-~~dr~~~~--~~~~------~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
.+|+|+|+ |.||+.+++.+. .-|++|. ++|+.... .... ...++...+++++++..+|+|+-+.
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft 80 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT 80 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence 58999998 999999999876 4578877 66766432 1100 0112333567889888999999554
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.19 Score=52.78 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=53.1
Q ss_pred cEEEEEeCChhhHHHHHHHhh-CCCEEEEECCC-CCCCC-----------ccccc------------C-c---eecCCHH
Q 006758 163 LVLGIVGRSASARALATRSLS-FKMSVLYFDVP-EGKGK-----------VTFPS------------A-A---RRMDTLN 213 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka-fGm~V~~~dr~-~~~~~-----------~~~~~------------g-~---~~~~sL~ 213 (632)
.+|||+|+|.||+.+++.+.. -+++|.++... ..... ..+.. + . ....+++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~ 83 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence 479999999999999999875 46887766531 11100 00100 0 0 1112566
Q ss_pred HH-h--ccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 214 DL-L--AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 214 eL-L--~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
++ + ..+|+|+.|+|.-... +..-.+++.|+..|.++-.
T Consensus 84 ~l~~~~~~vDvV~eatg~~~~~-----e~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 84 KIKWGDAGAEYVVESTGVFTTM-----EKAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GCCTTTTTCCEEEECSSSCCSH-----HHHGGGGGGTCSEEEESSC
T ss_pred HCccccCCCCEEEECCCchhhH-----HHHHHHHhCCCeEEEeccC
Confidence 65 2 5799999999953322 1223456678666666554
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.87 E-value=0.16 Score=52.20 Aligned_cols=34 Identities=21% Similarity=-0.016 Sum_probs=30.7
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
++|.|.| .|.||+.+++.|...|.+|+++++...
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 59 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 59 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence 6899999 599999999999999999999998753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.84 E-value=0.042 Score=57.28 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=32.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~ 226 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES 226 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence 58899999999999999999999999 7999987653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.048 Score=55.98 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=32.5
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|++|.|+|. |.||..+++.++.+|++|++.+++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~ 190 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK 190 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6899999997 9999999999999999999998865
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.26 Score=49.23 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=32.6
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+.|+++.|.|. |.||+++|+.|...|++|++.++..
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~ 65 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA 65 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 589999999996 6799999999999999999986543
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.13 Score=52.23 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=46.1
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCC--CEEEEECCCCCCCCc-ccc-----cCc-------eecCCHHHHhcc--CC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFK--MSVLYFDVPEGKGKV-TFP-----SAA-------RRMDTLNDLLAA--SD 220 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafG--m~V~~~dr~~~~~~~-~~~-----~g~-------~~~~sL~eLL~~--AD 220 (632)
...+++|.|.|. |.||+.+++.|...| .+|++.++....... ... .++ .....+.+++.. +|
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 467899999998 999999999999888 899999876522210 000 011 112345566766 88
Q ss_pred EEEEccCCC
Q 006758 221 VISLHCAVT 229 (632)
Q Consensus 221 VV~l~lPlT 229 (632)
+|+.+....
T Consensus 101 ~Vih~A~~~ 109 (346)
T 4egb_A 101 VIVNFAAES 109 (346)
T ss_dssp EEEECCCCC
T ss_pred EEEECCccc
Confidence 888776543
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.21 Score=52.50 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred cccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 157 MRRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 157 ~~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
+..|.+.+|.|||+|.+|..+|+.|...|. ++.++|...
T Consensus 31 q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~ 70 (346)
T 1y8q_A 31 QKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQ 70 (346)
T ss_dssp HHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 457899999999999999999999999998 899998764
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.25 Score=51.93 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=52.3
Q ss_pred ccCcEEEE-----EeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGI-----VGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGI-----IGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+. .+|++ ||=+++..+++..+..||++|.+..|..-.........+....++++.++++|||..-.
T Consensus 167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~ 237 (324)
T 1js1_X 167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN 237 (324)
T ss_dssp CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecC
Confidence 67 89999 99999999999999999999999998653322111123455689999999999998843
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.047 Score=56.02 Aligned_cols=36 Identities=6% Similarity=-0.055 Sum_probs=33.1
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|++|.|+| .|.||..+++.++.+|++|++.+++..
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~ 184 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE 184 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 689999999 899999999999999999999998653
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.18 Score=50.37 Aligned_cols=40 Identities=20% Similarity=0.063 Sum_probs=34.4
Q ss_pred ccccccCcEEEEEeC-Ch--hhHHHHHHHhhCCCEEEEECCCC
Q 006758 156 GMRRCRGLVLGIVGR-SA--SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 156 ~~~~L~GktVGIIGl-G~--IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|..+.|+++.|.|. |. ||..+|+.|...|++|++.+++.
T Consensus 20 ~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 62 (280)
T 3nrc_A 20 HMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ 62 (280)
T ss_dssp --CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence 456789999999996 44 99999999999999999999875
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.13 Score=54.15 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=25.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhC---CCEEEEECC
Q 006758 163 LVLGIVGRSASARALATRSLSF---KMSVLYFDV 193 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf---Gm~V~~~dr 193 (632)
.+|||+|+|.||+.+.+.|... .++|.+++.
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~ 34 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND 34 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence 3799999999999999998754 588876643
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.26 Score=49.35 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=46.4
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHHhc--cCCEEEEccCCC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLA--ASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~--~ADVV~l~lPlT 229 (632)
++|.|.| .|.||+.+++.|...|++|+++++...........++ ....++.+++. .+|+|+.+....
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~ 78 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADS 78 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCccc
Confidence 4789997 5999999999999999999999886533211111111 11234566777 789998877654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.043 Score=57.27 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=55.1
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-----cCCHHHHhc-----cCCEEEEccCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----MDTLNDLLA-----ASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL~-----~ADVV~l~lPlT 229 (632)
.|.+|.|+| .|.||..+++.++.+|++|++.+++....+.....++.. ..++.+.+. ..|+|+.++..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~- 241 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG- 241 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence 588999999 799999999999999999999998743222111111110 012222221 35777776653
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
. . -...+..|+++..+|.+|.
T Consensus 242 -~---~-~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 242 -A---M-FDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp -H---H-HHHHHHHEEEEEEEEECCC
T ss_pred -H---H-HHHHHHHHhcCCEEEEEeC
Confidence 1 1 1345566666667776664
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.83 Score=49.63 Aligned_cols=38 Identities=18% Similarity=-0.036 Sum_probs=35.4
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.++.|++|.|||.|.+|...++.|...|++|.++++..
T Consensus 8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~ 45 (457)
T 1pjq_A 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (457)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence 46899999999999999999999999999999999854
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.4 Score=52.06 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=69.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEE-EECCCC-------CCCC--ccc--ccC-ce--ecCCHHHHh-ccCCEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVL-YFDVPE-------GKGK--VTF--PSA-AR--RMDTLNDLL-AASDVI 222 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~-~~dr~~-------~~~~--~~~--~~g-~~--~~~sL~eLL-~~ADVV 222 (632)
++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+. -..+ ..+ ..+ .. .. +-++++ ..|||+
T Consensus 215 ~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~DVl 293 (419)
T 3aoe_E 215 DLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAEVL 293 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCSEE
T ss_pred CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCceEE
Confidence 5899999999999999999999999999999 445521 0000 000 000 00 11 112333 479999
Q ss_pred EEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 223 SLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 223 ~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+-|.. .+.|+.+....++ -.+++.-+.+.+- .+| .+.|.+..|.
T Consensus 294 iP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A-~~~L~~~Gi~ 337 (419)
T 3aoe_E 294 VLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PEA-EAYLLGKGAL 337 (419)
T ss_dssp EECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HHH-HHHHHHHTCE
T ss_pred Eeccc-----ccccccchHhhCC-ceEEEECCCCcCC-HHH-HHHHHHCCCE
Confidence 88753 4677888777775 4589999998875 333 3456655554
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.19 Score=52.57 Aligned_cols=110 Identities=15% Similarity=0.020 Sum_probs=63.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhC--------CCEEE-EECCCCCCCCcccc----------cCc-eecC---CHHHHh-cc
Q 006758 163 LVLGIVGRSASARALATRSLSF--------KMSVL-YFDVPEGKGKVTFP----------SAA-RRMD---TLNDLL-AA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf--------Gm~V~-~~dr~~~~~~~~~~----------~g~-~~~~---sL~eLL-~~ 218 (632)
.+|||||+|.||+.+++.+... +++|. ++|++.......+. .+. ..+. ++++++ ..
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 4799999999999999988753 36664 45666432221010 111 1233 788887 35
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChh-hcHHHHHHHHHcCCc
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQL-LDDCAVKQLLIDGTL 273 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~i-VDe~AL~~AL~sg~I 273 (632)
.|+|+.|+|.. .|...--+-....|+.|.-+|-.-=..+ ..-.+|.++.++..+
T Consensus 87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv 141 (331)
T 3c8m_A 87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNR 141 (331)
T ss_dssp CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCC
Confidence 79999999975 1111111223445666766665432233 233456666655443
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.11 Score=54.30 Aligned_cols=89 Identities=10% Similarity=0.128 Sum_probs=52.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC---CCEEEEECCCCCCCC-cccccCceecCCHH-HHhccCCEEEEccCCChhhHhhc
Q 006758 163 LVLGIVG-RSASARALATRSLSF---KMSVLYFDVPEGKGK-VTFPSAARRMDTLN-DLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf---Gm~V~~~dr~~~~~~-~~~~~g~~~~~sL~-eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
.+|||+| +|.||+.+.+.|... .++|..+......+. ..+......+.+++ +.+..+|+|+.|+|... +....
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~-s~~~a 82 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGEL-SAKWA 82 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchH-HHHHH
Confidence 5799999 999999999998765 467776653222221 01110001111221 24468999999998532 22221
Q ss_pred cHHHHhccCCCcEEEEcCCC
Q 006758 237 NAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG 256 (632)
. ..++.|+.+|+.+.-
T Consensus 83 -~---~~~~~G~~vId~s~~ 98 (336)
T 2r00_A 83 -P---IAAEAGVVVIDNTSH 98 (336)
T ss_dssp -H---HHHHTTCEEEECSST
T ss_pred -H---HHHHcCCEEEEcCCc
Confidence 1 223568899988754
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.081 Score=57.79 Aligned_cols=108 Identities=10% Similarity=0.087 Sum_probs=64.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhh----------CCCEEEEE-CCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCC
Q 006758 162 GLVLGIVGRSASARALATRSLS----------FKMSVLYF-DVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAV 228 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka----------fGm~V~~~-dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPl 228 (632)
-.+|||||+|.||+.+++.+.. .+++|.++ |++..... .+..+...+.++++++.+ .|+|+.++|.
T Consensus 10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~-~~~~~~~~~~d~~ell~d~diDvVve~tp~ 88 (444)
T 3mtj_A 10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAE-ALAGGLPLTTNPFDVVDDPEIDIVVELIGG 88 (444)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHH-HHHTTCCEESCTHHHHTCTTCCEEEECCCS
T ss_pred cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhh-hhcccCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 3579999999999999987652 46666544 56542211 111233456789999974 7999999995
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCChhhc-HHHHHHHHHcCCcc
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSSQLLD-DCAVKQLLIDGTLA 274 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG~iVD-e~AL~~AL~sg~I~ 274 (632)
+.....++ ...|+.|.-+|-.-=+-+.. -.+|.++.++....
T Consensus 89 ~~~h~~~~----~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~ 131 (444)
T 3mtj_A 89 LEPARELV----MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM 131 (444)
T ss_dssp STTHHHHH----HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHH----HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence 32222222 34455565555322222222 35677777765543
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.16 Score=52.60 Aligned_cols=69 Identities=17% Similarity=0.044 Sum_probs=49.9
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPl 228 (632)
..+++|.|.|. |.||+.+++.|...|++|++++|...........++ ....++.+++..+|+|+.+...
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~ 103 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD 103 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence 36789999998 999999999999999999999987643221111111 1123466788899999887664
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.2 Score=54.89 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=70.4
Q ss_pred ccCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCC--cccc---------cCceecCCHHHHhcc
Q 006758 160 CRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGK--VTFP---------SAARRMDTLNDLLAA 218 (632)
Q Consensus 160 L~GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~--~~~~---------~g~~~~~sL~eLL~~ 218 (632)
+.|++|+|+|+ ..-...|++.|...|++|.+|||...... .... .......++.+.+..
T Consensus 333 ~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (481)
T 2o3j_A 333 VTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARG 412 (481)
T ss_dssp CTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHTT
T ss_pred cCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHcC
Confidence 68999999997 45678999999999999999999863211 0000 012234678889999
Q ss_pred CCEEEEccCCChhhHhhccHHH-HhccCCCcEEEEcCCChhhcHHHHHH
Q 006758 219 SDVISLHCAVTDETIQIINAEC-LQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~-L~~MK~GAvLINvgRG~iVDe~AL~~ 266 (632)
+|+|++++... +-+. ++-+. ...|+...+|+++ |+ ++|.+.+.+
T Consensus 413 ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~~ 457 (481)
T 2o3j_A 413 AHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKALRE 457 (481)
T ss_dssp CSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHHHH
T ss_pred CCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHHHh
Confidence 99999998863 3322 35444 4467766688886 54 456555443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=0.06 Score=56.54 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=32.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFK-MSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||...++.++.+| .+|++.+++..
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~ 231 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN 231 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHH
Confidence 5889999999999999999999999 59999998753
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.056 Score=55.36 Aligned_cols=90 Identities=19% Similarity=0.044 Sum_probs=57.2
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-cccCcee---c--CCHHHHh-----ccCCEEEEccCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARR---M--DTLNDLL-----AASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-~~~g~~~---~--~sL~eLL-----~~ADVV~l~lPl 228 (632)
.|++|.|+|. |.||..+++.++.+|++|++.+++....+.. ...++.. . .++.+.+ ...|+|+.++..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 228 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG 228 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence 6899999999 9999999999999999999999875332211 1112111 1 1222222 136777776652
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
. . -...+..|+++..+|.+|..
T Consensus 229 --~---~-~~~~~~~l~~~G~iv~~G~~ 250 (336)
T 4b7c_A 229 --E---I-LDTVLTRIAFKARIVLCGAI 250 (336)
T ss_dssp --H---H-HHHHHTTEEEEEEEEECCCG
T ss_pred --c---h-HHHHHHHHhhCCEEEEEeec
Confidence 1 1 24556677777777777653
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.52 E-value=0.08 Score=56.67 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=58.8
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceec---------------------------CCH
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM---------------------------DTL 212 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~---------------------------~sL 212 (632)
.|++|.|+|. |.||..+++.++..|++|++.+++....+.....++..+ ..+
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 299 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV 299 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence 6899999998 999999999999999999998875432221111222110 011
Q ss_pred HHHh-ccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 213 NDLL-AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 213 ~eLL-~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.++. ...|+|+.++.. . .+ ...+..|+++..+|++|.
T Consensus 300 ~~~~g~g~Dvvid~~G~--~---~~-~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 300 VEKAGREPDIVFEHTGR--V---TF-GLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHSSCCSEEEECSCH--H---HH-HHHHHHSCTTCEEEESCC
T ss_pred HHHhCCCceEEEECCCc--h---HH-HHHHHHHhcCCEEEEEec
Confidence 1122 247888887763 1 12 456677888888888874
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.1 Score=56.08 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=61.6
Q ss_pred cCcEEEEEeCC----------hhhHHHHHHHhhCCCEEEEECCCCCCCC-----ccccc---C---ceecCCHHHHhccC
Q 006758 161 RGLVLGIVGRS----------ASARALATRSLSFKMSVLYFDVPEGKGK-----VTFPS---A---ARRMDTLNDLLAAS 219 (632)
Q Consensus 161 ~GktVGIIGlG----------~IG~~vA~~LkafGm~V~~~dr~~~~~~-----~~~~~---g---~~~~~sL~eLL~~A 219 (632)
.|++|+|+|+. .-...|++.|...|++|.+|||...... ..+.. . .....++.+.+..|
T Consensus 312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (436)
T 1mv8_A 312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391 (436)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence 68999999997 5678999999999999999999732111 01110 0 12346788999999
Q ss_pred CEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 220 DVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 220 DVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
|+|+++... ++-+.+ + ...|+ +.++|++
T Consensus 392 d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~ 419 (436)
T 1mv8_A 392 DVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL 419 (436)
T ss_dssp SEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred cEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence 999999887 333322 2 34565 6788886
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.06 Score=55.71 Aligned_cols=36 Identities=6% Similarity=0.043 Sum_probs=32.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~ 202 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH 202 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence 58899999999999999999999999 8999998754
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.19 Score=50.14 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=45.3
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhCCCEEEEECC-CCCCCC-c----c----------cccCceecCCHHHHhccCCEEEE
Q 006758 162 GLVLGIVG-RSASARALATRSLSFKMSVLYFDV-PEGKGK-V----T----------FPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr-~~~~~~-~----~----------~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
|++|.|.| .|.||+.+++.|...|.+|.+..| +..... . . +........++.+++..+|+|+.
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 80 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH 80 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence 57899999 699999999999999999999887 432100 0 0 00111223457788889999988
Q ss_pred cc
Q 006758 225 HC 226 (632)
Q Consensus 225 ~l 226 (632)
+.
T Consensus 81 ~A 82 (322)
T 2p4h_X 81 TA 82 (322)
T ss_dssp CC
T ss_pred cC
Confidence 76
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 632 | ||||
| d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 2e-24 | |
| d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 5e-21 | |
| d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 9e-21 | |
| d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 1e-19 | |
| d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 3e-17 | |
| d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 2e-10 | |
| d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 8e-09 | |
| d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 1e-07 | |
| d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 4e-06 |
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 98.8 bits (245), Expect = 2e-24
Identities = 54/183 (29%), Positives = 76/183 (41%), Gaps = 2/183 (1%)
Query: 119 ADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALA 178
A+ M LLLG RR + W G +PL + LGI G + +ALA
Sbjct: 6 AEIAMLLLLGSARRAGE-GEKMIRTRSWPGW-EPLELVGEKLDNKTLGIYGFGSIGQALA 63
Query: 179 TRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238
R+ F M + YFD A D+L+ LL+ S SL+ T ET N
Sbjct: 64 KRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK 123
Query: 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVL 298
++ + GA +VNT L+D+ V L G LA D G + ++PN
Sbjct: 124 ATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTF 183
Query: 299 ILP 301
+ P
Sbjct: 184 LFP 186
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 89.0 bits (219), Expect = 5e-21
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 7/194 (3%)
Query: 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCR---GMRRCRGLVLGIVGRSA 172
EE AD+ + +L L RR AL + SV+ + G R RG LGI+G
Sbjct: 1 EETADSTLCHILNLYRRATW-LHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGR 59
Query: 173 SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDET 232
+A+A R+ +F +VL++D P V +R+ TL DLL SD ++LHC + +
Sbjct: 60 VGQAVALRAKAFGFNVLFYD-PYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHN 118
Query: 233 IQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAW 290
+IN ++ ++ GAFLVNT L+D+ A+ Q L +G + G ALD +E + +
Sbjct: 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGP 178
Query: 291 VREMPNVLILPRSA 304
+++ PN++ P +A
Sbjct: 179 LKDAPNLICTPHAA 192
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 88.1 bits (217), Expect = 9e-21
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 7/184 (3%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
A+ +ALLL R+ A +L W S + G+V A+
Sbjct: 5 AAEHALALLLAASRQIPA-ADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQ-- 61
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
R +F V+ +D + + +L+DLLA +D IS+H T ET +I+
Sbjct: 62 --RIAAFGAYVVAYDPYVSPARAAQLGI--ELLSLDDLLARADFISVHLPKTPETAGLID 117
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNV 297
E L KPG +VN L+D+ A+ + G + LD ++ + E+ V
Sbjct: 118 KEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQV 177
Query: 298 LILP 301
++ P
Sbjct: 178 VVTP 181
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 85.1 bits (209), Expect = 1e-19
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 4/185 (2%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
+A+ V+ ++L L+R + GW ++ + +G V A+
Sbjct: 3 VAEHVVMMILSLVRNYLP-SHEWARKGGW--NIADCVSHAYDLEAMHVGTVAAGRIGLAV 59
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
R F + + Y D V T D+ DV++L+C + ET +IN
Sbjct: 60 LRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN 119
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG-PQWMEAWVREMPN 296
E L+ K GA++VNT +L D AV + L G LAG A D P + R MP
Sbjct: 120 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 179
Query: 297 VLILP 301
+ P
Sbjct: 180 NGMTP 184
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 78.1 bits (191), Expect = 3e-17
Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 14/192 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
+A+ V+ LL LLR A L G RG LGI+G
Sbjct: 2 TRSVAELVIGELLLLLRGVPE-ANAKAHRGVG----NKLAAGSFEARGKKLGIIGYGHIG 56
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
L + S M V ++D+ A ++ L+DLL SDV+SLH T
Sbjct: 57 TQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKN 112
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD-----GAEGPQWMEA 289
++ A+ + +KPG+ L+N ++D A+ L LAG A+D A +
Sbjct: 113 MMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTS 172
Query: 290 WVREMPNVLILP 301
+ E NVL+ P
Sbjct: 173 PLAEFDNVLLTP 184
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 58.7 bits (140), Expect = 2e-10
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 26/205 (12%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARAL 177
IA+ + L LLR + L A + + + + + + +
Sbjct: 5 IAEFALTDTLYLLRNMG-KVQAQLQAGDYEKAGTFIGKELGQQT-------VGVMGTGHI 56
Query: 178 ATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237
++ + + +L DL SDVI LH ++ IIN
Sbjct: 57 GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIIN 116
Query: 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD----------------GA 281
+KPGA ++NT L+D A+ L G LAG +D
Sbjct: 117 EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSF 176
Query: 282 EGPQWMEAWVREMPNVLILPRSADY 306
+ P W E MPNV++ P A Y
Sbjct: 177 KDPLWDELL--GMPNVVLSPHIAYY 199
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 53.2 bits (126), Expect = 8e-09
Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 14/189 (7%)
Query: 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASA 174
A+ +A+ +ALLL +R + + V + +G + ++G
Sbjct: 1 ADAVAEFALALLLAPYKRIIQYGE-KMKRGDYGRDV-----EIPLIQGEKVAVLGLGEIG 54
Query: 175 RALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234
+ + V F +G R ++L + L + + T
Sbjct: 55 TRVGKILAALGAQVRGFSRTPKEGPW------RFTNSLEEALREARAAVCALPLNKHTRG 108
Query: 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--GAEGPQWMEAWVR 292
++ + L + A VN G +++LD V ++L + A D +A
Sbjct: 109 LVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF 168
Query: 293 EMPNVLILP 301
+PNV+ P
Sbjct: 169 SLPNVVATP 177
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 50.6 bits (119), Expect = 1e-07
Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 24/202 (11%)
Query: 118 IADTVMALLLGLLRRTHLLARHALSASG-WLGSVQPLCRGMRRCRGLVLGIVGRSASARA 176
IA+ +LR+ + W ++ R R V+G+VG +
Sbjct: 4 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG------REVRDQVVGVVGTGHIGQV 57
Query: 177 LATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236
F V+ +D+ +D+L+DL +DVISLH + +I
Sbjct: 58 FMQIMEGFGAKVITYDIFR---NPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMI 114
Query: 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALD--------------GAE 282
N E + +K +VN L+D AV + L G + G A+D G E
Sbjct: 115 NDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKE 174
Query: 283 GPQWMEAWVREMPNVLILPRSA 304
P A + PNVL+ P++A
Sbjct: 175 FPDARLADLIARPNVLVTPKTA 196
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 44.6 bits (105), Expect = 4e-06
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 19 LPSVVALNCIEDCVLEQD---SLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAA 75
+P V L+ DC +E +A VA + + + + A L++ L R
Sbjct: 1 MPLVALLDGR-DCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTRED 59
Query: 76 QRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTH 134
+ + ++I+ +GS +D A DLG+ + +V + + + R
Sbjct: 60 LEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVY-SEQASIEMREEAAREIR 117
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 632 | |||
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
| d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.81 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.73 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.7 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.68 | |
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.65 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.64 | |
| d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.61 | |
| d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.51 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.5 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.4 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.38 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.29 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.29 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.24 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.13 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.88 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.86 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.84 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.71 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.54 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.52 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.42 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.38 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.32 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.15 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.05 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.05 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.03 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.03 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.88 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.88 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.85 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 97.77 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.76 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.73 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.71 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.7 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.64 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.56 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.52 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.51 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.5 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.42 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.13 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.09 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.07 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 97.04 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.01 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.0 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.98 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.96 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.91 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.91 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.82 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.78 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.77 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 96.74 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.74 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.73 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.71 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.7 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 96.69 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.65 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.63 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.51 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.46 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.43 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.43 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 96.4 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.37 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.36 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.34 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.28 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.27 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.25 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.15 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.14 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.14 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.13 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.06 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 96.06 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.05 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.05 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.0 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.98 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 95.89 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 95.81 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 95.8 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.72 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.68 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 95.67 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.65 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.58 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.51 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.43 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.39 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 95.36 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.34 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.3 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.27 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 95.26 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.25 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 95.14 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 95.13 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 95.12 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.11 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.08 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 95.07 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.99 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 94.74 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 94.73 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 94.7 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.6 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 94.55 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.5 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 94.45 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 94.43 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 94.3 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.25 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.19 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 94.15 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.14 | |
| d1dfca3 | 123 | Fascin {Human (Homo sapiens) [TaxId: 9606]} | 94.08 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.94 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.66 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.59 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 93.57 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.44 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.43 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.41 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.23 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.23 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.21 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.15 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 93.13 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.11 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.08 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.04 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 93.02 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.93 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 92.74 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 92.74 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 92.59 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.59 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 92.57 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 92.5 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 92.43 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.3 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 92.28 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.27 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 92.27 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 92.2 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.18 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.13 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.1 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 92.09 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 92.06 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 92.04 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.02 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.91 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 91.85 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 91.79 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 91.78 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.77 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 91.75 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 91.67 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.6 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.59 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.54 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 91.52 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.52 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 91.51 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 91.42 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 91.35 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 91.29 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 91.14 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 91.02 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 90.96 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.93 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 90.92 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 90.9 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 90.86 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 90.81 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.75 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 90.75 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.72 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.63 | |
| d1dfca1 | 133 | Fascin {Human (Homo sapiens) [TaxId: 9606]} | 90.51 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 90.51 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.51 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 90.4 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.34 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 90.3 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 90.28 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.28 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.21 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 90.13 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 89.98 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 89.8 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 89.78 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 89.74 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.72 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 89.68 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 89.6 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.48 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 89.47 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.43 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 89.35 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 89.11 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 88.82 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.82 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 88.82 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 88.8 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 88.75 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 88.43 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 88.33 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 88.28 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 88.25 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 88.02 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 87.74 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 87.51 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 87.47 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 87.33 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.32 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 87.26 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.23 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 87.2 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 87.15 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 86.94 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 86.91 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 86.33 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 86.18 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 85.94 | |
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 85.92 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 85.92 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 85.8 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 85.72 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 85.64 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 85.52 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 85.45 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 85.39 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 85.35 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 85.24 | |
| d1hcda_ | 118 | Histidine-rich actin-binding protein (hisactophili | 84.95 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 84.82 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 84.7 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 83.73 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.41 | |
| d1hcda_ | 118 | Histidine-rich actin-binding protein (hisactophili | 83.19 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 82.13 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 82.12 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 82.04 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 82.04 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 81.87 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 81.63 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 81.49 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 81.39 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 81.15 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 80.66 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 80.45 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 80.19 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 80.13 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.8e-47 Score=367.48 Aligned_cols=184 Identities=26% Similarity=0.357 Sum_probs=165.0
Q ss_pred ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECC
Q 006758 114 RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV 193 (632)
Q Consensus 114 na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr 193 (632)
|+.+||||+|++||++.|+++.++.. .+.+.|.... ....++.|+++||||+|.||+.+|+++++|||+|++||+
T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~-~~~~~W~~~~----~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~ 75 (184)
T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADAS-LREHTWKRSS----FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 75 (184)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCGGG----CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHH-HHhCCCCccc----cccccccceeeeeccccchhHHHHHHhhhccceEEeecC
Confidence 67899999999999999999999887 5889997532 223679999999999999999999999999999999999
Q ss_pred CCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 194 PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 194 ~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
+..... ....+ ....++++++++||+|++|||+|++|++|||++.|+.||+|++|||+|||++||++||++||++|+|
T Consensus 76 ~~~~~~-~~~~~-~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i 153 (184)
T d1ygya1 76 YVSPAR-AAQLG-IELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 153 (184)
T ss_dssp TSCHHH-HHHHT-CEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE
T ss_pred CCChhH-HhhcC-ceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcE
Confidence 864332 11122 3457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCCCCCCCccccCCCcEEEcCCCC
Q 006758 274 AGCALDGAEGPQWMEAWVREMPNVLILPRSA 304 (632)
Q Consensus 274 ~GAaLDVfE~P~~~~~pL~~~pNVIiTPHiA 304 (632)
+||+||||++||.+++|||++|||++|||||
T Consensus 154 ~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG 184 (184)
T d1ygya1 154 RAAGLDVFATEPCTDSPLFELAQVVVTPHLG 184 (184)
T ss_dssp EEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred eEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence 9999999998666689999999999999997
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=100.00 E-value=9e-47 Score=367.28 Aligned_cols=190 Identities=28% Similarity=0.376 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 006758 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 115 a~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
+.+|||++|+|||+++|++..+++. ++++.|.... +.....+++.|++|||||+|+||+.+|+++++|||+|++||++
T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~-~r~g~w~~~~-~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 79 (191)
T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKM-IRTRSWPGWE-PLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 79 (191)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCC-TTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCcCC-ccccccceecccceEEeecccchHHHHHHHHhhcccccccccc
Confidence 5789999999999999999999987 5889996432 2223457899999999999999999999999999999999988
Q ss_pred CCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 195 EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 195 ~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
...............++|+++++.||+|++|||+|++|++|||++.|+.||+|++|||+|||++||++||++||++|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~ 159 (191)
T d1gdha1 80 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA 159 (191)
T ss_dssp CCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred ccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCce
Confidence 65443223334556689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCCCCCccccCCCcEEEcCCCCCc
Q 006758 275 GCALDGAEGPQWMEAWVREMPNVLILPRSADY 306 (632)
Q Consensus 275 GAaLDVfE~P~~~~~pL~~~pNVIiTPHiAg~ 306 (632)
||+||||++||+.++|||++|||++|||+|+.
T Consensus 160 ~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa 191 (191)
T d1gdha1 160 YAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA 191 (191)
T ss_dssp EEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred EEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence 99999999877788999999999999999974
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=100.00 E-value=3.9e-46 Score=363.44 Aligned_cols=188 Identities=34% Similarity=0.541 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCC---CCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEEC
Q 006758 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQ---PLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFD 192 (632)
Q Consensus 116 ~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~---~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~d 192 (632)
++|||++|++||+++|++..+++. .+++.|..... +......+|.|+||||||+|+||+.+|+++++|||+|++||
T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~-~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d 79 (193)
T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQA-LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYD 79 (193)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHH-HHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeecc
Confidence 589999999999999999999887 58899975421 11233578999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCC
Q 006758 193 VPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 193 r~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~ 272 (632)
++..... ....+.....+|+++++.||+|++|||+|++|++|||++.|+.||+|++|||+|||++||++||+++|++|+
T Consensus 80 ~~~~~~~-~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~ 158 (193)
T d1mx3a1 80 PYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 158 (193)
T ss_dssp TTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTS
T ss_pred Ccccccc-hhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCC
Confidence 9865432 222345567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeecCCC-CCC-CCccccCCCcEEEcCCCCC
Q 006758 273 LAGCALDGAEG-PQW-MEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 273 I~GAaLDVfE~-P~~-~~~pL~~~pNVIiTPHiAg 305 (632)
|+||+||||++ |++ .++||+++|||++|||+||
T Consensus 159 i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~ 193 (193)
T d1mx3a1 159 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193 (193)
T ss_dssp EEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred ceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence 99999999997 444 4789999999999999996
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=9.4e-46 Score=361.90 Aligned_cols=184 Identities=27% Similarity=0.332 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 006758 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 115 a~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.++||||++++||+++|++..++.. .+++.|..... ...++|.|+||||||+|+||+.+|++|++|||+|++||++
T Consensus 2 p~aVAE~~l~~iL~l~R~~~~~~~~-~~~g~w~~~~~---~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 77 (199)
T d1dxya1 2 PAAIAEFALTDTLYLLRNMGKVQAQ-LQAGDYEKAGT---FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY 77 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCHHHHTC---CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred ChHHHHHHHHHHHHHHhCHHHHHHH-HHhCCCCcccC---cccccccceeeeeeecccccccccccccccceeeeccCCc
Confidence 4689999999999999999999887 58899964321 2236899999999999999999999999999999999998
Q ss_pred CCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 195 EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 195 ~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
..... .......+++++++.||+|++|||+|++|++|||++.|+.||+|++|||+|||++||++||++||++|+|+
T Consensus 78 ~~~~~----~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ 153 (199)
T d1dxya1 78 PMKGD----HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 153 (199)
T ss_dssp CCSSC----CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred cchhh----hcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcc
Confidence 64432 11234569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCC--------------CCCccccCCCcEEEcCCCCCc
Q 006758 275 GCALDGAEGPQ--------------WMEAWVREMPNVLILPRSADY 306 (632)
Q Consensus 275 GAaLDVfE~P~--------------~~~~pL~~~pNVIiTPHiAg~ 306 (632)
||+||||++|| |..++|+.+|||++|||+|||
T Consensus 154 ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy 199 (199)
T d1dxya1 154 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 199 (199)
T ss_dssp EEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred eEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence 99999999743 223578899999999999997
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=100.00 E-value=1.1e-45 Score=357.64 Aligned_cols=187 Identities=26% Similarity=0.299 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 116 ~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+||||+|+++|+++|++..++.. .+.+.|.... ....+++|.|++|||||+|+||+.+|++|++|||+|.+||+..
T Consensus 1 isVAE~~l~~iL~~~R~~~~~~~~-~~~g~w~~~~--~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 1 ISVAEHVVMMILSLVRNYLPSHEW-ARKGGWNIAD--CVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCHHH--HHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHH-HHhCCCCCcc--cCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence 379999999999999999988887 4789996321 1123467999999999999999999999999999999999986
Q ss_pred CCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 006758 196 GKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (632)
Q Consensus 196 ~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~G 275 (632)
.........+.....+|++++++||+|++|||+|++|++|||++.|+.||+|++|||+|||++||++||+++|++|+|+|
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~g 157 (188)
T d2naca1 78 LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAG 157 (188)
T ss_dssp CCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEE
T ss_pred ccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCcee
Confidence 54332223345667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCC-CCCCCccccCCCcEEEcCCCCC
Q 006758 276 CALDGAEG-PQWMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 276 AaLDVfE~-P~~~~~pL~~~pNVIiTPHiAg 305 (632)
|+||||++ |++.++||+++|||++|||+||
T Consensus 158 a~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d2naca1 158 YAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188 (188)
T ss_dssp EEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred EEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence 99999987 7788999999999999999997
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-45 Score=352.04 Aligned_cols=183 Identities=28% Similarity=0.359 Sum_probs=159.2
Q ss_pred ChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECC
Q 006758 114 RAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV 193 (632)
Q Consensus 114 na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr 193 (632)
|+++||||+|+++|+++|+++.++.. .+.+.|.+.. ...++|.|++|||||+|.||+.+|+++++|||+|++||+
T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~-~~~~~w~~~~----~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~ 75 (188)
T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAK-AHRGVGNKLA----AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDI 75 (188)
T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHH-HHHTCCC---------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHH-HHhCCCcccc----cccccccceEEEEeecccchhhhhhhcccccceEeeccc
Confidence 68999999999999999999998886 5788997542 223579999999999999999999999999999999998
Q ss_pred CCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 194 PEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 194 ~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
...... .....+.+|+++++.||||++|||+|++|++|||++.|+.||+|++|||+|||++||++||+++|++|++
T Consensus 76 ~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~ 151 (188)
T d1sc6a1 76 ENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHL 151 (188)
T ss_dssp SCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSE
T ss_pred cccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCc
Confidence 764332 2334567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCC-CC----CCCccccCCCcEEEcCCCCC
Q 006758 274 AGCALDGAEG-PQ----WMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 274 ~GAaLDVfE~-P~----~~~~pL~~~pNVIiTPHiAg 305 (632)
.||+||||++ |. +..+||+++|||++|||+||
T Consensus 152 ~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d1sc6a1 152 AGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG 188 (188)
T ss_dssp EEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred eEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence 9999999987 44 45679999999999999997
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=6.9e-45 Score=351.16 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 006758 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 115 a~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
|++||||++++||+++|++..+.+. .+++.|..... ..+|.|++|||||+|.||+.+|+++++|||+|++||++
T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~-~~~~~w~~~~~-----~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~ 74 (181)
T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEK-MKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT 74 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHH-HHTTCCCCCSC-----CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS
T ss_pred CchHHHHHHHHHHHHHhCHHHHHHH-HHcCCCCCCCC-----CCcccCceEEEeccccccccceeeeecccccccccccc
Confidence 5899999999999999999999887 57889975432 23589999999999999999999999999999999998
Q ss_pred CCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 195 EGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 195 ~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
..... .....+|++++++||+|++|||+|++|+++||++.|+.||+|++|||+|||++||++||+++|++|++.
T Consensus 75 ~~~~~------~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 75 PKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp CCCSS------SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccc------eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 75432 223468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCC--CCCCCccccCCCcEEEcCCCCC
Q 006758 275 GCALDGAEG--PQWMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 275 GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiAg 305 (632)
||++|||++ |.+.++||+++|||++|||+||
T Consensus 149 ~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG 181 (181)
T d1qp8a1 149 IFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181 (181)
T ss_dssp EEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred EEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence 999999964 5567889999999999999997
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=100.00 E-value=2.6e-44 Score=351.57 Aligned_cols=182 Identities=26% Similarity=0.330 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 116 EEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 116 ~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++||||||+++|+++|++..+++. .+++.|.... .-+++|.|+||||||+|+||+.+|+++++|||+|++||+..
T Consensus 2 ~aVAE~~l~~~l~l~r~~~~~~~~-~~~~~~~w~~----~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~ 76 (197)
T d1j4aa1 2 NAIAEHAAIQAARILRQDKAMDEK-VARHDLRWAP----TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR 76 (197)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHH-HHTTBCCCTT----CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CHHHHHHHHHHHHHHhCcHHHHHH-HHhCCCCcCC----CcCccccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence 689999999999999999998887 4667664221 12368999999999999999999999999999999999886
Q ss_pred CCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcce
Q 006758 196 GKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAG 275 (632)
Q Consensus 196 ~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~G 275 (632)
.... ........+|++++++||+|++|||+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+|
T Consensus 77 ~~~~---~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~ 153 (197)
T d1j4aa1 77 NPEL---EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFG 153 (197)
T ss_dssp CHHH---HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEE
T ss_pred cccc---ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchh
Confidence 4322 1223446799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCC--------------CCCccccCCCcEEEcCCCCC
Q 006758 276 CALDGAEGPQ--------------WMEAWVREMPNVLILPRSAD 305 (632)
Q Consensus 276 AaLDVfE~P~--------------~~~~pL~~~pNVIiTPHiAg 305 (632)
|+||||++|| +..+||+.+|||++|||+||
T Consensus 154 a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~ 197 (197)
T d1j4aa1 154 YAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF 197 (197)
T ss_dssp EEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred eeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence 9999998643 22357999999999999986
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=2.2e-20 Score=169.83 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=104.1
Q ss_pred CCEEEEeCCCCCCchHHhhccCCceEEecCCCCCc--ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccc
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLGRLA--DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVD 96 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~l~--e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD 96 (632)
.|+|++.+.+. +...+.|+...++.+.+..... .+.++++|+++++..+++++++++++|+||+|++.|+|+||||
T Consensus 2 Mpkvli~~~~~--~~~~~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~ID 79 (130)
T d1ygya2 2 LPVVLIADKLA--PSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVD 79 (130)
T ss_dssp CCEEEECSSCC--GGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTBC
T ss_pred CCEEEEECCCC--HHHHHHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeecccccchh
Confidence 68899987653 3445678888888887643221 2468899999998888999999999999999999999999999
Q ss_pred hHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCC
Q 006758 97 SALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGW 146 (632)
Q Consensus 97 ~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W 146 (632)
+++|+++||.|+|+|++++.+||||++++||+++|++..+.+. .+.+.|
T Consensus 80 l~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~-vr~g~~ 128 (130)
T d1ygya2 80 VDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEF-VPDAVN 128 (130)
T ss_dssp HHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCC-CTTBCS
T ss_pred HHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhh-cccCcc
Confidence 9999999999999999999999999999999999998765443 344444
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.73 E-value=2.9e-18 Score=156.97 Aligned_cols=124 Identities=20% Similarity=0.273 Sum_probs=105.5
Q ss_pred CCEEEEeCCCCCCchHHhhccCCceEEecCCCC---CcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCcc
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPLGR---LADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTV 95 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~~~---l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~V 95 (632)
.|+|++++.. ++..+...|++++++.+++... +.+..+++++++++++..++++++++++|+||+|+++|+|+|||
T Consensus 1 mP~v~~ld~~-d~~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~i 79 (133)
T d1mx3a2 1 MPLVALLDGR-DCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNI 79 (133)
T ss_dssp CCEEEESSCS-CCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTB
T ss_pred CCEEEEecCC-cchhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcccE
Confidence 3889999864 6678889999999998876433 33344567888899988899999999999999999999999999
Q ss_pred chHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCC
Q 006758 96 DSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGS 149 (632)
Q Consensus 96 D~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~ 149 (632)
|+++|+++||.|+|+|++++ +||||+++|+|+++|++++.. +|.|.+.
T Consensus 80 D~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~-----~g~~~~~ 127 (133)
T d1mx3a2 80 DIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI-----TGRIPDS 127 (133)
T ss_dssp CHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH-----HSCTTTT
T ss_pred eeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH-----hccccch
Confidence 99999999999999999988 579999999999999997553 4677644
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.70 E-value=2e-19 Score=162.08 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=94.3
Q ss_pred chHHhhccCCceEEecCCCCCcccccccceEEEEecCCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEEEEcC
Q 006758 32 VLEQDSLAGVALVEHVPLGRLADGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRLIHVD 111 (632)
Q Consensus 32 ~~e~e~L~~laeV~~~~~~~l~e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~VtNvp 111 (632)
+...+.|+....+... ..++++|+++++ +++++.++++|+||||++.|+|+||+|++.++ .||.|+|++
T Consensus 11 ~e~~e~L~~~~~v~~~-------~d~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~ 79 (121)
T d1qp8a2 11 PEAEEELRKYFKIVRG-------GDLGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNA 79 (121)
T ss_dssp HHHHHHHHTTCEEECS-------SCCTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCTTSCCTTSC-TTSCEECCC
T ss_pred HHHHHHhhhcceEeec-------ccccccceeeee---ccCHHHHhcCCCceEEEecccCcCCCCHHHhc-cCeEEEECC
Confidence 4456677776555332 236677877766 68999999999999999999999999999985 699999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCC
Q 006758 112 TSRAEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFK 185 (632)
Q Consensus 112 g~na~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafG 185 (632)
|+++.+||||+++++|++.|+ ++|+|+|.||+.+|+++++||
T Consensus 80 g~~~~~vae~~~~~il~~~r~--------------------------------l~i~G~G~iG~~iA~r~~a~G 121 (121)
T d1qp8a2 80 GSNGYGNERVWRQMVMEAVRN--------------------------------LITYATGGRPRNIAKREDYIG 121 (121)
T ss_dssp SSSSSSCHHHHHHHHHHHHHH--------------------------------HHHHHTTSCCSCBCCGGGTC-
T ss_pred CCChHHHHHHHHHHHHHhcCC--------------------------------EEEEcCCHHHHHHHHHHHhcC
Confidence 999999999999999999863 479999999999999999998
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.68 E-value=6.6e-17 Score=146.39 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=82.2
Q ss_pred ceEEecCC--CCCcccccccceEEEEecCCCCCHHHHhcCC--CceEEEEecccCCccchHHHHhcCcEEEEcCCCChHH
Q 006758 42 ALVEHVPL--GRLADGKIEAAAAVLLHSLAYLPRAAQRRLR--PYQLILCLGSSDRTVDSALAADLGLRLIHVDTSRAEE 117 (632)
Q Consensus 42 aeV~~~~~--~~l~e~~i~dAdaIli~s~~~L~~evL~~lp--~LK~I~~~gaG~D~VD~~aa~erGI~VtNvpg~na~a 117 (632)
.++.+.+. .+.....++++|+|++....++++++++++| +||+|+..|+|+||||+++|+++||+|+|+|++++++
T Consensus 25 ~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ID~~~a~~~gI~V~n~P~~~~~a 104 (131)
T d1dxya2 25 NTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETA 104 (131)
T ss_dssp CEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHH
T ss_pred eEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccccccccccccccceEEEEeCCCCCchh
Confidence 35655543 2233356788999998888899999999875 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcHHHH
Q 006758 118 IADTVMALLLGLLRRTHLLA 137 (632)
Q Consensus 118 VAE~ALaliLal~Rrl~~~~ 137 (632)
||||+++++|+++|++...+
T Consensus 105 VAE~~~~~~l~l~R~l~~~~ 124 (131)
T d1dxya2 105 VHNMVYFSLQHLVDFLTKGE 124 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcchHHHH
Confidence 99999999999999976543
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.65 E-value=3.8e-16 Score=141.49 Aligned_cols=110 Identities=7% Similarity=-0.075 Sum_probs=89.0
Q ss_pred CCEEEEeCCCCCCchHHhhccCCceEEecCC-CCCcc----cccccceEEEEecCCCCCHHHHhcCC-CceEEEEecccC
Q 006758 19 LPSVVALNCIEDCVLEQDSLAGVALVEHVPL-GRLAD----GKIEAAAAVLLHSLAYLPRAAQRRLR-PYQLILCLGSSD 92 (632)
Q Consensus 19 kP~VvvL~~~e~~~~e~e~L~~laeV~~~~~-~~l~e----~~i~dAdaIli~s~~~L~~evL~~lp-~LK~I~~~gaG~ 92 (632)
||+|++..++ ++...+.|+..+++...+. ...+. +.++++|++++....++++++++++| +||+|++.|+|+
T Consensus 1 K~kVlit~~~--~~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~ 78 (129)
T d1gdha2 1 KKKILITWPL--PEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGF 78 (129)
T ss_dssp CCEEEESSCC--CHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCC
T ss_pred CCEEEEeCCC--CHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCC
Confidence 6899988654 3344567777778776553 33332 44688999999888899999999997 699999999999
Q ss_pred CccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHH
Q 006758 93 RTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLL 130 (632)
Q Consensus 93 D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~ 130 (632)
||||+++|+++||+|+|+||+++++|||+|+.+|+.++
T Consensus 79 d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~ 116 (129)
T d1gdha2 79 DHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLID 116 (129)
T ss_dssp TTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997665544444
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.3e-16 Score=143.74 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=87.7
Q ss_pred CCCCEEEEeCCCCCCchHHhhccCC--ceEEecCCCCCc----ccccccceEEEEecCCCCCHHHHhcCCCceEEEEecc
Q 006758 17 TPLPSVVALNCIEDCVLEQDSLAGV--ALVEHVPLGRLA----DGKIEAAAAVLLHSLAYLPRAAQRRLRPYQLILCLGS 90 (632)
Q Consensus 17 ~~kP~VvvL~~~e~~~~e~e~L~~l--aeV~~~~~~~l~----e~~i~dAdaIli~s~~~L~~evL~~lp~LK~I~~~ga 90 (632)
..|.+|++++.+. +...+.|+.. ..+...+ ..++ .+.+.++|++++++..++++++++++|+||+|+++|+
T Consensus 2 k~kmKILv~d~i~--~~a~~~L~~~g~~~v~~~~-~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gv 78 (132)
T d1sc6a2 2 KDKIKFLLVEGVH--QKALESLRAAGYTNIEFHK-GALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI 78 (132)
T ss_dssp CSSCCEEECSCCC--HHHHHHHHHTTCCCEEECS-SCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred CCCCEEEEECCCC--HHHHHHHHhCCCEEEEeCC-CCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEecc
Confidence 4577899998753 3334555543 3343332 2222 2568899999998888999999999999999999999
Q ss_pred cCCccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHh
Q 006758 91 SDRTVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLR 131 (632)
Q Consensus 91 G~D~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~R 131 (632)
||||||+++|+++||.|+|+|++++.+|||++++||++..|
T Consensus 79 G~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~ 119 (132)
T d1sc6a2 79 GTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLI 119 (132)
T ss_dssp CCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999987666654333
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.61 E-value=1.2e-16 Score=152.95 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=83.4
Q ss_pred HhhccCC-ceEEecCCCC----CcccccccceEEEEec--CCCCCHHHHhcCCCceEEEEecccCCccchHHHHhcCcEE
Q 006758 35 QDSLAGV-ALVEHVPLGR----LADGKIEAAAAVLLHS--LAYLPRAAQRRLRPYQLILCLGSSDRTVDSALAADLGLRL 107 (632)
Q Consensus 35 ~e~L~~l-aeV~~~~~~~----l~e~~i~dAdaIli~s--~~~L~~evL~~lp~LK~I~~~gaG~D~VD~~aa~erGI~V 107 (632)
++.|+.. .++...+..+ ..+..+.+||+++++. ..++++++|+++|+||+|+++|+|+||||+++|+++||.|
T Consensus 60 r~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V 139 (186)
T d2naca2 60 RKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTV 139 (186)
T ss_dssp HHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred HHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEE
Confidence 4555543 4555444332 2345789999999984 4689999999999999999999999999999999999999
Q ss_pred EEcCCCChHHHHHHH--------HHHHHHHHhhcHHHH
Q 006758 108 IHVDTSRAEEIADTV--------MALLLGLLRRTHLLA 137 (632)
Q Consensus 108 tNvpg~na~aVAE~A--------LaliLal~Rrl~~~~ 137 (632)
+|+||+|+.+||||+ +++++...|++...+
T Consensus 140 ~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~ 177 (186)
T d2naca2 140 AEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEY 177 (186)
T ss_dssp EECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGG
T ss_pred EECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 999999999999999 667777777765443
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.51 E-value=1.1e-14 Score=132.53 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=85.0
Q ss_pred EEEEeCCCCCCc-hHHhhccCC--ceEEecCC--CCCcccccccceEEEEecCCCCCHHHHhcCC--CceEEEEecccCC
Q 006758 21 SVVALNCIEDCV-LEQDSLAGV--ALVEHVPL--GRLADGKIEAAAAVLLHSLAYLPRAAQRRLR--PYQLILCLGSSDR 93 (632)
Q Consensus 21 ~VvvL~~~e~~~-~e~e~L~~l--aeV~~~~~--~~l~e~~i~dAdaIli~s~~~L~~evL~~lp--~LK~I~~~gaG~D 93 (632)
||++.+..++.. +..+.++.. .++...+. .+...+.++++|+|++....+++++++++++ +||+|++.|+|||
T Consensus 2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d 81 (134)
T d1j4aa2 2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVD 81 (134)
T ss_dssp EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcC
Confidence 677776543322 222333333 34544442 1222356789999999888899999999764 6999999999999
Q ss_pred ccchHHHHhcCcEEEEcCCCChHHHHHHHHHHHHHHHhhcHH
Q 006758 94 TVDSALAADLGLRLIHVDTSRAEEIADTVMALLLGLLRRTHL 135 (632)
Q Consensus 94 ~VD~~aa~erGI~VtNvpg~na~aVAE~ALaliLal~Rrl~~ 135 (632)
|||+++|+++||.|+|+|++ +|||+|+++||+++|+++.
T Consensus 82 ~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~ 120 (134)
T d1j4aa2 82 NIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL 120 (134)
T ss_dssp TBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999998 4799999999999998643
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.4e-15 Score=139.80 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=94.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.|.||+++|+|||.||+.+|+++++|||+|++||+++.....+. .....+.++++++..+|+|+++.. ++++|+.
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-~dG~~v~~~~~a~~~adivvtaTG----n~~vI~~ 95 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA-MEGYEVTTMDEACQEGNIFVTTTG----CIDIILG 95 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEECCHHHHTTTCSEEEECSS----CSCSBCH
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh-cCceEeeehhhhhhhccEEEecCC----CccchhH
Confidence 38999999999999999999999999999999999874433222 234456799999999999988854 6789999
Q ss_pred HHHhccCCCcEEEEcC-CChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 239 ECLQHIKPGAFLVNTG-SSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 239 ~~L~~MK~GAvLINvg-RG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
+.|..||+|++|.|+| +..-||.++|.+...+.......+|.|+
T Consensus 96 eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~ 140 (163)
T d1li4a1 96 RHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140 (163)
T ss_dssp HHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence 9999999999999998 4566999998875433332223344443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.40 E-value=1.9e-13 Score=126.44 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=100.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~ 240 (632)
++|||||+|.||..||++|...|++|.+||+++...+.....+.....++.+++.+||+|++|+|..++++.++. ...
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 469999999999999999999999999999987554433345666778999999999999999999999888763 358
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|.++|+++....-....+.+.+....+. .+|.
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA 118 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence 8899999999999999998889999999988776 6665
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.38 E-value=7.1e-13 Score=122.23 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=101.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-eecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-RRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
++|||||+|.||..+|+.|+..|.+|++||++....+.....+. ....+..+.+++||+|++++|. ..+..++. +..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl~-~l~ 78 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTLE-KLI 78 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHHH-HHG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhhh-hhh
Confidence 47999999999999999999999999999998643332222222 1233445688999999999996 46777774 677
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCCCcc
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYS 307 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiAg~T 307 (632)
..+++++++++++......... ...+....+....+...+. |......|+....+++||+.++..
T Consensus 79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~ 145 (165)
T d2f1ka2 79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDP 145 (165)
T ss_dssp GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred hhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCH
Confidence 8899999999998776443333 4445555566566665443 333445677778899999866443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=8e-12 Score=115.16 Aligned_cols=146 Identities=13% Similarity=0.097 Sum_probs=108.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCc--eecCCHHH-HhccCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAA--RRMDTLND-LLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~--~~~~sL~e-LL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++|+|||+|.||.++|+.|+..|. +|++||++....+.....+. ....+.++ ....+|+|++|+|. ..+..++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl- 79 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA- 79 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence 469999999999999999998774 89999998644332222222 12334444 34579999999995 4455665
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCC--CCCCCccccCCCcEEEcCCCCCccHHHH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEG--PQWMEAWVREMPNVLILPRSADYSEEVW 311 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~--P~~~~~pL~~~pNVIiTPHiAg~T~ea~ 311 (632)
.+....+++++++++++.....-.+++.+.+....+.+..+...|. |......|++..++++|||-.. +.+..
T Consensus 80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~-~~~~~ 154 (171)
T d2g5ca2 80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRL 154 (171)
T ss_dssp HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS-CHHHH
T ss_pred hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC-CHHHH
Confidence 4567779999999999997766667777888888889999998874 5566677889899999999653 44433
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.29 E-value=2.5e-12 Score=119.04 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=99.2
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--HHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN--AEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~--~~~ 240 (632)
++|||||+|.||..||++|...|++|.+||++....+.....+.....++.+++..+|+|++|+|..+..+.++. ...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 479999999999999999999999999999986544333344566678999999999999999999888777753 447
Q ss_pred HhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 241 LQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 241 L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
+..+++|.++||++....-....+.+.+.+..+. .+|+
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da 119 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA 119 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence 8889999999999999999999999999988775 6776
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.24 E-value=5e-12 Score=118.56 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=85.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
+.||++.|+|||.+|+.+|++++++|++|++++..+.....+.. ..+.+.+++++++.+|+|+.+... +++|+.+
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~m-dGf~v~~~~~a~~~aDi~vTaTGn----~~vI~~~ 95 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVM-EGFNVVTLDEIVDKGDFFITCTGN----VDVIKLE 95 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHT-TTCEECCHHHHTTTCSEEEECCSS----SSSBCHH
T ss_pred ecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHh-cCCccCchhHccccCcEEEEcCCC----CccccHH
Confidence 79999999999999999999999999999999988744332333 344567999999999999999875 5689999
Q ss_pred HHhccCCCcEEEEcCCChh-hcHHHHH
Q 006758 240 CLQHIKPGAFLVNTGSSQL-LDDCAVK 265 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~i-VDe~AL~ 265 (632)
.|..||+|++|.|+|.... +|.++|.
T Consensus 96 h~~~MKdgaIl~N~GHfd~EIdv~~L~ 122 (163)
T d1v8ba1 96 HLLKMKNNAVVGNIGHFDDEIQVNELF 122 (163)
T ss_dssp HHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred HHHHhhCCeEEEeccccchhhhhHHHH
Confidence 9999999999999999765 5555554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.13 E-value=2.9e-11 Score=113.12 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=95.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccc--------ccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTF--------PSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~--------~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
..|||||+|.||..||++|...|++|++||+++...+... ..++....++.+++..+|+|++++|..+.+..
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~ 82 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence 5799999999999999999999999999999874332111 11233345677888899999999999998887
Q ss_pred hccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
++ ...+..+++|.++||++...+-+...+.+.+....+. .||.
T Consensus 83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda 125 (176)
T d2pgda2 83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS 125 (176)
T ss_dssp HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence 76 4688999999999999999999999999999988776 6775
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.88 E-value=7.2e-10 Score=101.44 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=87.0
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhc
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQH 243 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~ 243 (632)
+|||||+|.||..||++|...|..|+ |+++..........+... .+..+.+.++|++++++|...+..... ...+..
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~ 78 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGSE-AVPLERVAEARVIFTCLPTTREVYEVA-EALYPY 78 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEEE-ECSSTHHHHHHHHHHCCE-ECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCCHHHHHHHHHHcCCc-ccccccccceeEEEecccchhhhhhhh-cccccc
Confidence 69999999999999999998888775 555443222112222222 344567778999999999988877665 468899
Q ss_pred cCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 244 IKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 244 MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
++++.++||++....-....+.+.+++..+. .||.
T Consensus 79 ~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda 113 (156)
T d2cvza2 79 LREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA 113 (156)
T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred ccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence 9999999999999999999999999988776 6776
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.86 E-value=4.6e-09 Score=95.02 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=86.2
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
.=++|+||| +|.||+.+|++|+..|++|.+||+... ...++.+..+|++++++|.. .+..++ .+
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~-------------~~~~~~~~~~~~v~~~~~~~-~~~~v~-~~ 72 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPIN-LTLETI-ER 72 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGG-GHHHHH-HH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc-------------cccchhhhhccccccccchh-hheeee-ec
Confidence 457899999 999999999999999999999998753 24467789999999999963 344433 67
Q ss_pred HHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccCCCcEEEcC
Q 006758 240 CLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVREMPNVLILP 301 (632)
Q Consensus 240 ~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~~pNVIiTP 301 (632)
.+..+++++++|+++.-+..-.+++.+.+..+.+.++.+..-+... ..-.+++++|
T Consensus 73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~~~v~~hP~~Gp~~~~------~~g~~~v~~~ 128 (152)
T d2pv7a2 73 LKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIAS------MAKQVVVRCD 128 (152)
T ss_dssp HGGGCCTTSEEEECCSCCHHHHHHHHHHCSSEEEEEEECSCTTCSC------CTTCEEEEEE
T ss_pred ccccccCCceEEEecccCHHHHHHHHHHccCCEEEecccCCCcccc------cCCcEEEEec
Confidence 8889999999999998665545555555444334434443332211 1234677776
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.84 E-value=9.4e-10 Score=100.12 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=81.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQ 242 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~ 242 (632)
++|||||+|.||+.+|+.|...|++|.++++...........+.....++.|++..||+|++|+|..... ..+ .....
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~-~~~-~~~~~ 78 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL-GAA-RRAGR 78 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHH-HHH-HHHHT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHH-HHH-Hhhcc
Confidence 4799999999999999999999999999998765433233333344568999999999999999975443 332 12222
Q ss_pred ccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecC
Q 006758 243 HIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGA 281 (632)
Q Consensus 243 ~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVf 281 (632)
. .+.++|+++.........+.+.+.... .+|+-
T Consensus 79 ~--~~~~~id~st~~p~~~~~l~~~~~~~~----~~d~~ 111 (152)
T d1i36a2 79 H--VRGIYVDINNISPETVRMASSLIEKGG----FVDAA 111 (152)
T ss_dssp T--CCSEEEECSCCCHHHHHHHHHHCSSSE----EEEEE
T ss_pred c--CCceeeccCcCCHHHHHHHHHHHhccC----CCccc
Confidence 2 367899999988877788887776532 46653
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.71 E-value=7.2e-09 Score=96.11 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=89.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc--------cCceecCC---HHHHhccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP--------SAARRMDT---LNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~--------~g~~~~~s---L~eLL~~ADVV~l~lPlT~~ 231 (632)
++|||||+|.||..||++|...|++|.+||++....+.... .......+ +-..+..+++++.+++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 46999999999999999999999999999997643221110 01112223 34456788999999998887
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
....++ ..+..+++|.++||++....-+...+.+.|....+. .||.
T Consensus 82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~--~lda 127 (178)
T d1pgja2 82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR--FLGM 127 (178)
T ss_dssp HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE--EEEE
T ss_pred hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhccee--Eecc
Confidence 777774 567789999999999999999999999999988776 5664
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.54 E-value=3.3e-08 Score=90.17 Aligned_cols=100 Identities=12% Similarity=0.125 Sum_probs=76.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-cccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECL 241 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L 241 (632)
++|||||+|+||+++++.|...|.+|.+|+++....... ...+.....+.++++..||+|+++++ |+ .+ .+.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~---~~-~~vl 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQ---LF-ETVL 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GG---GH-HHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hH---hH-HHHh
Confidence 479999999999999999999999999999886433311 12255566789999999999999996 32 12 4567
Q ss_pred hccCCCcEEEEcCCChhhcHHHHHHHHHc
Q 006758 242 QHIKPGAFLVNTGSSQLLDDCAVKQLLID 270 (632)
Q Consensus 242 ~~MK~GAvLINvgRG~iVDe~AL~~AL~s 270 (632)
+.++++.++|++.-| +..+.|.+.|..
T Consensus 75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~ 101 (152)
T d2ahra2 75 KPLHFKQPIISMAAG--ISLQRLATFVGQ 101 (152)
T ss_dssp TTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred hhcccceeEeccccc--ccHHHHHhhhcc
Confidence 889999999999887 345556666643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.52 E-value=1.7e-07 Score=85.67 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=78.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---------------ccccCceecCCHHHHhccCCEEEEcc
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---------------TFPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---------------~~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
.|||+|||.|.||..+|..|...|++|.+|+++....+. ..........++.|.++.||+|++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 379999999999999999999999999999997432110 00111122457899999999999999
Q ss_pred CCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 227 AVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
|. ..+..++ .+....++++.++|-. -|.......+.+.+......
T Consensus 81 ~~-~~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~~~~ 125 (184)
T d1bg6a2 81 PA-IHHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRENGAP 125 (184)
T ss_dssp CG-GGHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTTCC
T ss_pred ch-hHHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHhcCC
Confidence 95 3455555 4566788999988744 44444455566677665543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.42 E-value=1.1e-07 Score=89.07 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=75.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---cccccCce----ecCCHHHHhccCCEEEEccCCC-h
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---VTFPSAAR----RMDTLNDLLAASDVISLHCAVT-D 230 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---~~~~~g~~----~~~sL~eLL~~ADVV~l~lPlT-~ 230 (632)
.+...+|.|||.|..|..-++.++++|+.|.++|.+....+ ..+..... ....+.+.+++||+||.++-.. .
T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 46778999999999999999999999999999998754332 11111111 1235789999999999987532 3
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCC
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+-.+|.++.++.||||+++||++-
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVDvai 133 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVDVAV 133 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred ccCeeecHHHHhhcCCCcEEEEeec
Confidence 4678999999999999999999964
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.38 E-value=1.7e-08 Score=91.09 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=60.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhcc
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHI 244 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~M 244 (632)
|||||+|+||+.||+.|+.-+..+.+|+|+....+.....+.....++.+++..||+|++|+|.. ... +.+..+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~-----~v~~~l 75 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIK-----TVANHL 75 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THH-----HHHTTT
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhh-----HHHhhh
Confidence 79999999999999998774433468998875443222333444568899999999999999953 222 345556
Q ss_pred -CCCcEEEEcCCChhh
Q 006758 245 -KPGAFLVNTGSSQLL 259 (632)
Q Consensus 245 -K~GAvLINvgRG~iV 259 (632)
+++.++|+++.+...
T Consensus 76 ~~~~~ivi~~s~~~~~ 91 (153)
T d2i76a2 76 NLGDAVLVHCSGFLSS 91 (153)
T ss_dssp CCSSCCEEECCSSSCG
T ss_pred cccceeeeecccchhh
Confidence 479999999987654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.32 E-value=6.9e-07 Score=84.61 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=71.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee-----------------------------c
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR-----------------------------M 209 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~-----------------------------~ 209 (632)
.+...+|.|||.|..|..-++.++++|+.|.++|.+....+.....+... .
T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence 45667999999999999999999999999999998765433111111111 1
Q ss_pred CCHHHHhccCCEEEEccCCC-hhhHhhccHHHHhccCCCcEEEEcC
Q 006758 210 DTLNDLLAASDVISLHCAVT-DETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 210 ~sL~eLL~~ADVV~l~lPlT-~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..+.+.+++||+||.++-.. ..+-.+|+++.++.||||++||+++
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 22456688999999765332 2255789999999999999999986
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.15 E-value=6.8e-07 Score=82.38 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=62.3
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---cccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---VTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.+.+++|.|||.|.||+.+++.|...|+ +|.+++|+..... ..+......+.++.+.+.++|+||.|++. ...
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~ 97 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP 97 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence 4789999999999999999999999998 7999999853322 11222233457888889999999999764 346
Q ss_pred hccHHHHh
Q 006758 235 IINAECLQ 242 (632)
Q Consensus 235 lI~~~~L~ 242 (632)
+|+.+.+.
T Consensus 98 ii~~~~i~ 105 (159)
T d1gpja2 98 VIHVDDVR 105 (159)
T ss_dssp CBCHHHHH
T ss_pred cccHhhhH
Confidence 77777664
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.05 E-value=2.1e-06 Score=74.02 Aligned_cols=92 Identities=12% Similarity=-0.054 Sum_probs=66.5
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-c-Cce--ecCCHHHHhccCCEEEEccCCChhhH
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-S-AAR--RMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~-g~~--~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+|+|++|.|||.|.+|.+-|+.|..+|++|.++++........+. . ... .-.--++.+..+++|+.+...
T Consensus 8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d----- 82 (113)
T d1pjqa1 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD----- 82 (113)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-----
T ss_pred EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-----
Confidence 4789999999999999999999999999999999987643321111 1 111 111123457788998877543
Q ss_pred hhccHHHHhccCCCcEEEEcC
Q 006758 234 QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvg 254 (632)
..+|.+....+|+..++||+.
T Consensus 83 ~~~n~~i~~~a~~~~ilVNv~ 103 (113)
T d1pjqa1 83 DTVNQRVSDAAESRRIFCNVV 103 (113)
T ss_dssp HHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHHHHHHHHHHcCCEEEeC
Confidence 345777777888888999964
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=5.6e-06 Score=74.00 Aligned_cols=92 Identities=10% Similarity=-0.036 Sum_probs=67.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-------CceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-------AARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-------g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
++|+|||.|.||..+|..|...|.+|.+++|........... ......+..+.+..+|+|+++++. .++...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence 579999999999999999999999999999987543311000 011223456778899999999996 556655
Q ss_pred ccHHHHhccCCCcEEEEcCCC
Q 006758 236 INAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG 256 (632)
+ ......+++++.+|.+.-|
T Consensus 80 ~-~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 80 V-KSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HhhccccCcccEEeeccCc
Confidence 4 3455667789999888766
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.03 E-value=7.8e-07 Score=80.44 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=67.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC-CEEEEECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCCChhhHhhccHHH
Q 006758 163 LVLGIVGRSASARALATRSLSFK-MSVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAEC 240 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~ 240 (632)
++|||||+|+||+++++.|...| .+|.++||+....+... ..++....+.++ +.+||+|+++++- .+.. +.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP-~~~~-----~v 73 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKP-QDME-----AA 73 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCH-HHHH-----HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecCH-HHHH-----Hh
Confidence 47999999999999999876555 89999999875433211 124555556655 5789999999971 2232 33
Q ss_pred HhccC-CCcEEEEcCCChhhcHHHHHHHHH
Q 006758 241 LQHIK-PGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 241 L~~MK-~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
+..++ .+.++|.+.-|--+ +.|.+.|.
T Consensus 74 ~~~l~~~~~~viS~~ag~~~--~~l~~~l~ 101 (152)
T d1yqga2 74 CKNIRTNGALVLSVAAGLSV--GTLSRYLG 101 (152)
T ss_dssp HTTCCCTTCEEEECCTTCCH--HHHHHHTT
T ss_pred HHHHhhcccEEeecccCCCH--HHHHHHhC
Confidence 44443 47899998887654 45666553
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.03 E-value=2.9e-06 Score=81.24 Aligned_cols=108 Identities=16% Similarity=0.201 Sum_probs=81.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc-cCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~lI~ 237 (632)
.|.|+||+|-|+|++|+.+|+.|..+|++|+++|.+..........+.. ..+.++++. .|||++-|. +.+.|+
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~-~~~~~~~~~~~~DI~iPcA-----~~~~I~ 97 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPCA-----MGGVIT 97 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccc-ccCccccccccceeeeccc-----cccccc
Confidence 4899999999999999999999999999999999875332211222332 346777776 699998663 457899
Q ss_pred HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++....|+ --+++..+.+.+.++. ..+.|.++.|.
T Consensus 98 ~~~a~~i~-ak~i~e~AN~p~~~~~-~~~~L~~rgI~ 132 (201)
T d1c1da1 98 TEVARTLD-CSVVAGAANNVIADEA-ASDILHARGIL 132 (201)
T ss_dssp HHHHHHCC-CSEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred HHHHhhhh-hheeeccCCCCcchhh-HHHHhcccceE
Confidence 99999997 4577888888877664 34566666664
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.8e-05 Score=74.51 Aligned_cols=139 Identities=11% Similarity=0.032 Sum_probs=94.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC---------------cccc--------------cCceecCCHH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK---------------VTFP--------------SAARRMDTLN 213 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~---------------~~~~--------------~g~~~~~sL~ 213 (632)
++|+|||.|.||..+|..+...|++|+.||++....+ ..+. .......++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 6899999999999999999999999999999864211 0000 0123456788
Q ss_pred HHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCCCCCccccC
Q 006758 214 DLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQWMEAWVRE 293 (632)
Q Consensus 214 eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~~~~~pL~~ 293 (632)
+.+.+||+|+=++|-.-+.+.-+-++.-+.++++++|....++-. ...|...+.. .-..+++=-|. |++ .
T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~--i~~la~~~~~-p~r~ig~Hffn-P~~------~ 154 (192)
T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ--ITSIANATTR-QDRFAGLHFFN-PVP------V 154 (192)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC--HHHHHTTSSC-GGGEEEEEECS-STT------T
T ss_pred hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccc--cchhhhhccC-HhHEEeecccc-ccC------c
Confidence 999999999999999888777777777777899999887666443 3445555432 33334443343 332 3
Q ss_pred CCcEEEcCCCCCccHHHHH
Q 006758 294 MPNVLILPRSADYSEEVWM 312 (632)
Q Consensus 294 ~pNVIiTPHiAg~T~ea~~ 312 (632)
+|=|=+.||-. .+++..+
T Consensus 155 ~~lVEIv~g~~-T~~~~i~ 172 (192)
T d1f0ya2 155 MKLVEVIKTPM-TSQKTFE 172 (192)
T ss_dssp CCEEEEECCTT-CCHHHHH
T ss_pred ccEEEEcCCCC-CCHHHHH
Confidence 45455777633 3344333
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.88 E-value=3.6e-06 Score=79.10 Aligned_cols=97 Identities=15% Similarity=0.088 Sum_probs=75.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC-CcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG-KVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~-~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
-|++++|+|||||.=|.+=|.+|+--|++|++--|..... +.+...| ..+.++.|..+.||+|.+.+|...+ ..++.
T Consensus 13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~G-f~v~~~~eA~~~aDiim~L~PD~~q-~~vy~ 90 (182)
T d1np3a2 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG-LKVADVKTAVAAADVVMILTPDEFQ-GRLYK 90 (182)
T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT-CEEECHHHHHHTCSEEEECSCHHHH-HHHHH
T ss_pred HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhc-cccccHHHHhhhcCeeeeecchHHH-HHHHH
Confidence 4789999999999999999999999999998877654322 2222233 4456999999999999999995444 35566
Q ss_pred HHHHhccCCCcEEEEcCCChh
Q 006758 238 AECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~i 258 (632)
++....||+|+.|. .+.|--
T Consensus 91 ~~I~p~lk~g~~L~-FaHGfn 110 (182)
T d1np3a2 91 EEIEPNLKKGATLA-FAHGFS 110 (182)
T ss_dssp HHTGGGCCTTCEEE-ESCCHH
T ss_pred HhhhhhcCCCcEEE-Eeccce
Confidence 78899999999865 556553
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.88 E-value=1.4e-05 Score=75.23 Aligned_cols=104 Identities=12% Similarity=-0.013 Sum_probs=71.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC------c-ccc-------------cCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK------V-TFP-------------SAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~------~-~~~-------------~g~~~~~sL~eLL~~ADVV 222 (632)
++|+|||+|.+|..+|..+...|.+|++||.+....+ . ..+ .......++.+.+..||++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 4699999999999999999999999999998642110 0 000 0123456789999999999
Q ss_pred EEccCCCh---------hhHhhcc--HHHHhccCCCcEEEEcCCChhhcHHHHHH
Q 006758 223 SLHCAVTD---------ETIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (632)
Q Consensus 223 ~l~lPlT~---------~T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~AL~~ 266 (632)
++|+|..- ....++. ...+..++++.++|.-+.-.+--.+.++.
T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~ 135 (202)
T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVI 135 (202)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHH
T ss_pred EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhh
Confidence 99999621 1112221 23556677899999988866544444433
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=2.1e-05 Score=73.41 Aligned_cols=93 Identities=22% Similarity=0.140 Sum_probs=67.1
Q ss_pred ccccCcEEEEEeCChh-hHHHHHHHhhCCCEEEEECCCCCCCC------cccccCc-----eecCCHHHHhccCCEEEEc
Q 006758 158 RRCRGLVLGIVGRSAS-ARALATRSLSFKMSVLYFDVPEGKGK------VTFPSAA-----RRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 158 ~~L~GktVGIIGlG~I-G~~vA~~LkafGm~V~~~dr~~~~~~------~~~~~g~-----~~~~sL~eLL~~ADVV~l~ 225 (632)
.+++||++.|||-+.| |+++|.+|...|++|..++....... .....+. ...+.+++....+|+|+.+
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa 104 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 104 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence 4799999999999976 99999999999999999886531110 0000000 1113378888899999999
Q ss_pred cCCChhhHhh-ccHHHHhccCCCcEEEEcCCCh
Q 006758 226 CAVTDETIQI-INAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 226 lPlT~~T~~l-I~~~~L~~MK~GAvLINvgRG~ 257 (632)
+|-. ++ +.. ...|+|+++||+|-..
T Consensus 105 vG~p----~~~i~~---d~ik~GavvIDvGi~~ 130 (171)
T d1edza1 105 VPSE----NYKFPT---EYIKEGAVCINFACTK 130 (171)
T ss_dssp CCCT----TCCBCT---TTSCTTEEEEECSSSC
T ss_pred cCCC----ccccCh---hhcccCceEeeccccc
Confidence 9852 33 555 3468999999999654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=97.77 E-value=5e-06 Score=77.95 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=76.6
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccC-------------ceecCCHHHHhcc
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSA-------------ARRMDTLNDLLAA 218 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g-------------~~~~~sL~eLL~~ 218 (632)
++|+|||.|.||..+|..+...|++|..||++....+.. ...+ .....++ +.+.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 83 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 83 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence 579999999999999999999999999999986422100 0000 1122233 34789
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHH
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLI 269 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~ 269 (632)
||+|+-++|-+-+.+.=+-++.-+.++++++|...+++-.+ ..|.+++.
T Consensus 84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~ 132 (186)
T d1wdka3 84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALK 132 (186)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCS
T ss_pred cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhcc
Confidence 99999999999888877777888889999999887776544 45555543
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=3.6e-05 Score=71.56 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=67.0
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||+|.|||.+. +|+.+|.+|...|++|+.++... .++.+.+.+||+|+.++.. .++|.
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~----p~~i~ 95 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGK----PGFIP 95 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCC----TTCBC
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccC----ccccc
Confidence 58999999999998 89999999999999999987543 3678889999999999985 47787
Q ss_pred HHHHhccCCCcEEEEcCCCh
Q 006758 238 AECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~ 257 (632)
.+ .+|+|+++||+|--.
T Consensus 96 ~~---~vk~g~vvIDvGi~~ 112 (166)
T d1b0aa1 96 GD---WIKEGAIVIDVGINR 112 (166)
T ss_dssp TT---TSCTTCEEEECCCEE
T ss_pred cc---ccCCCcEEEecCcee
Confidence 74 568999999998644
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.73 E-value=1.2e-05 Score=75.60 Aligned_cols=93 Identities=11% Similarity=-0.004 Sum_probs=67.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCC--------------CcccccCceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKG--------------KVTFPSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~--------------~~~~~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||.|.+|.++|..|...|.+|..|+++.... ...++.......++++++.+||+|++++|.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs 87 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT 87 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH
Confidence 579999999999999999999999999999764211 012333455567899999999999999994
Q ss_pred ChhhHhhccHH----HHhccCCCcEEEEcCCC
Q 006758 229 TDETIQIINAE----CLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 229 T~~T~~lI~~~----~L~~MK~GAvLINvgRG 256 (632)
...+.++..- .....+++..+|+++-|
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG 118 (189)
T d1n1ea2 88 -QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118 (189)
T ss_dssp -HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred -HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence 3344443221 01124567888998776
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.71 E-value=4.6e-05 Score=70.57 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=65.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----------ccc-----ccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----------VTF-----PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----------~~~-----~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|+|||.|.+|.++|..|...|.+|..|.|...... ..+ ........++++++..||+|++++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 5799999999999999999999999999987422100 001 1112335688999999999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
. ...+.++. +....+++. .+|.++.|-.
T Consensus 81 s-~~~~~~~~-~l~~~l~~~-~ii~~tkg~~ 108 (180)
T d1txga2 81 T-DGVLPVMS-RILPYLKDQ-YIVLISKGLI 108 (180)
T ss_dssp G-GGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred h-hhhHHHHH-hhccccccc-eecccccCcc
Confidence 4 44555553 455556655 5666666654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=2.1e-05 Score=65.36 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=48.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC-cccccCce-ecCC-HHHHhccCCEEEEcc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK-VTFPSAAR-RMDT-LNDLLAASDVISLHC 226 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~-~~~s-L~eLL~~ADVV~l~l 226 (632)
+++||+|+|+|+|..|+++|+.|...|++|.++|....... .....+.. .... -++.+.+.|+|++.-
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SP 72 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASP 72 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECT
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECC
Confidence 47899999999999999999999999999999998654332 11112221 1112 245677889888863
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=9.5e-05 Score=68.85 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=67.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~ 237 (632)
++.||+|.|||.+. +|+.+|.+|...|++|..++... .++.+.+.+||+|+.+++. .++|.
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~----~~~i~ 97 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQ----PEMVK 97 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhcccc----ccccc
Confidence 58999999999987 89999999999999999998754 3667888999999999985 46787
Q ss_pred HHHHhccCCCcEEEEcCCChhhcH
Q 006758 238 AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
.+ .+|+|+++||+|--.+.|.
T Consensus 98 ~~---~vk~g~iviDvgi~~~~~~ 118 (170)
T d1a4ia1 98 GE---WIKPGAIVIDCGINYVPDD 118 (170)
T ss_dssp GG---GSCTTCEEEECCCBC----
T ss_pred cc---cccCCCeEeccCccccccc
Confidence 64 5789999999987665543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.56 E-value=0.00023 Score=65.88 Aligned_cols=155 Identities=8% Similarity=0.002 Sum_probs=92.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC------cc------------cccCceecCCHHHHhccCCEEEE
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK------VT------------FPSAARRMDTLNDLLAASDVISL 224 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~------~~------------~~~g~~~~~sL~eLL~~ADVV~l 224 (632)
++|+|||+|.+|..+|..+ +.|++|++||.+....+ .. .........+......++|+|++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 4799999999999999877 57999999998753211 00 00111223455666789999999
Q ss_pred ccCCChhhH-hhcc-------HHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeecCCCCC-CCC---cccc
Q 006758 225 HCAVTDETI-QIIN-------AECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAEGPQ-WME---AWVR 292 (632)
Q Consensus 225 ~lPlT~~T~-~lI~-------~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE~P~-~~~---~pL~ 292 (632)
++|...... ++.+ ...+...+++.++|--+.-.+-..+.+..-+.+.++. +.++. .+. ..+.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL 153 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence 999765422 1111 1233445778888888887666666777776665543 33221 112 2455
Q ss_pred CCCcEEEcCCCCCccHHHHHHHHHHHHHHHHHHH
Q 006758 293 EMPNVLILPRSADYSEEVWMEIRDKAISVLQTFF 326 (632)
Q Consensus 293 ~~pNVIiTPHiAg~T~ea~~~~~~~a~~nL~~fL 326 (632)
..|.|++--+-.. +. ......+.+++.+....
T Consensus 154 ~p~riv~G~~~~~-~~-~~~~~~~~~~~l~~~~~ 185 (196)
T d1dlja2 154 YPSRIIVSCEEND-SP-KVKADAEKFALLLKSAA 185 (196)
T ss_dssp SCSCEEEECCTTS-CH-HHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCHhh-HH-HHHHHHHHHHHHHHhhh
Confidence 6677765544222 22 23344555566666553
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.52 E-value=6.7e-05 Score=72.48 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=68.3
Q ss_pred ccC-cEEEEEeCChhhHHHHHHHhh------CCCEEEEECCC-CCCCCcccccCce----ecCCHHHHhccCCEEEEccC
Q 006758 160 CRG-LVLGIVGRSASARALATRSLS------FKMSVLYFDVP-EGKGKVTFPSAAR----RMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~G-ktVGIIGlG~IG~~vA~~Lka------fGm~V~~~dr~-~~~~~~~~~~g~~----~~~sL~eLL~~ADVV~l~lP 227 (632)
++| |+|+|||||.-|.+=|.+|+- .|.+|.+-=|. ...-+.+...|.. .+.+..|..+.||+|.+.+|
T Consensus 41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP 120 (226)
T d1qmga2 41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120 (226)
T ss_dssp TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence 578 899999999999999999997 56776655333 2322222233332 24478899999999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
...+. .+. ++....||+|+.|.= +.|-
T Consensus 121 De~Q~-~vy-~~I~p~Lk~G~~L~F-aHGF 147 (226)
T d1qmga2 121 DSAQA-DNY-EKVFSHMKPNSILGL-SHGF 147 (226)
T ss_dssp HHHHH-HHH-HHHHHHSCTTCEEEE-SSSH
T ss_pred hHHHH-HHH-HHHHHhcCCCceeee-cchh
Confidence 75554 345 478899999998753 4443
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.51 E-value=3.4e-05 Score=75.18 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=79.3
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccc-cCceecCCHHHHh-ccCCEEEEccCCChhhHhh
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFP-SAARRMDTLNDLL-AASDVISLHCAVTDETIQI 235 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~-~g~~~~~sL~eLL-~~ADVV~l~lPlT~~T~~l 235 (632)
.+|.|+||.|-|+|++|+.+|+.|...|++|++.|.+......... .+.. ..+.++++ ..|||++-|. ..+.
T Consensus 35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~~cDIl~PcA-----~~~~ 108 (230)
T d1leha1 35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD-AVAPNAIYGVTCDIFAPCA-----LGAV 108 (230)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE-ECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCc-ccCCcccccccccEecccc-----cccc
Confidence 3589999999999999999999999999999999987533221111 1222 33555554 4599998774 4588
Q ss_pred ccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 236 INAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
|+++....++ --++|-.+...+.+.++. +.|.+..|.
T Consensus 109 I~~~~~~~l~-ak~Ive~ANn~~t~~ea~-~~L~~rGI~ 145 (230)
T d1leha1 109 LNDFTIPQLK-AKVIAGSADNQLKDPRHG-KYLHELGIV 145 (230)
T ss_dssp BSTTHHHHCC-CSEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred cChHHhhccC-ccEEEecccCCCCCchHH-HHHHhhCcE
Confidence 9988888887 458888888888877664 445555553
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.50 E-value=8.4e-05 Score=64.62 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=52.3
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCccccc-------CceecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPS-------AARRMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~-------g~~~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
|++.|+|+|.+|+.+|+.|...|.+|+++|.++......... .......|+++ +.+||.|++++|....+.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~ 79 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS 79 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence 568999999999999999999999999999876432211111 12223456665 889999999999766653
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.13 E-value=0.00086 Score=61.02 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=58.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccHH
Q 006758 162 GLVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINAE 239 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~ 239 (632)
..+|||||+|.||+.+++.++.. ++++++ +|++..... ..+.....++.+++.+.|+|++++|..... +-
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~ 74 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDI-----PE 74 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HH
T ss_pred cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccH-----HH
Confidence 35699999999999999999976 777664 456543322 234455678888899999999999975432 22
Q ss_pred HHhccCCCcEEEE
Q 006758 240 CLQHIKPGAFLVN 252 (632)
Q Consensus 240 ~L~~MK~GAvLIN 252 (632)
....++.|.-+|-
T Consensus 75 a~~aL~aG~~vv~ 87 (170)
T d1f06a1 75 QAPKFAQFACTVD 87 (170)
T ss_dssp HHHHHTTTSEEEC
T ss_pred HHHHHHCCCcEEE
Confidence 3344566765553
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.09 E-value=0.00033 Score=63.17 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=64.7
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccc-ccCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTF-PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~-~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
-.+++|+|||.|.+|..+|..+...|. ++..||....... ..+ .........-.+.+++||+|+++..
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 468899999999999999999886555 8999998753211 011 1111222233467889999999765
Q ss_pred CChh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 228 VTDE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 228 lT~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.... +..++. .+.+....|.+++|+++. .+|.-.
T Consensus 84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN--Pvd~~t 130 (148)
T d1ldna1 84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDILT 130 (148)
T ss_dssp CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHHHH
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC--ccHHHH
Confidence 4332 112211 224455568899999854 455433
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.07 E-value=0.00014 Score=64.72 Aligned_cols=89 Identities=12% Similarity=0.014 Sum_probs=58.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccc------cCceecCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFP------SAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~------~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++|+|.|||.|.||..+|+.|...|.+|+++||+...... .+. ........+++.+...|+++.++|....
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 80 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH 80 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence 3689999999999999999999999999999998643321 111 0111123456778888998888875332
Q ss_pred hHhhccHHHHhccCCCcEEEEcC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvg 254 (632)
. .+ ....++.+..+++++
T Consensus 81 ~--~~---~~~~~~~~~~~~~~~ 98 (182)
T d1e5qa1 81 A--TV---IKSAIRQKKHVVTTS 98 (182)
T ss_dssp H--HH---HHHHHHHTCEEECSS
T ss_pred h--HH---HHHHHhhccceeecc
Confidence 1 11 122234456666665
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=97.04 E-value=0.001 Score=64.84 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=60.3
Q ss_pred CceecCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 205 AARRMDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 205 g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
|+....++.|++++||+|++++|..+.+..++ .+....+++|++++|++.........+.+.|....+.
T Consensus 128 Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~ 196 (242)
T d2b0ja2 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196 (242)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred CCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence 45567899999999999999999877788888 5788999999999999999988888898888877665
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.01 E-value=0.00095 Score=60.46 Aligned_cols=95 Identities=15% Similarity=0.267 Sum_probs=62.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---------c---ccccCceecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---------V---TFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---------~---~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
+.++|+|||.|.+|+.+|..+...++ +++.+|.+....+ . ............++.+..||+|++++.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 56899999999999999988876664 8999998764221 0 001111223456788999999999885
Q ss_pred CCh--h------hHh--------hcc--HHHHhccCCCcEEEEcCC
Q 006758 228 VTD--E------TIQ--------IIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 228 lT~--~------T~~--------lI~--~~~L~~MK~GAvLINvgR 255 (632)
... . |+. ++. .+.+....|.+++|+++.
T Consensus 86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 321 1 221 111 124555678999999876
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00055 Score=62.39 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=51.3
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccc-cCceecCCHHHH-hccCCEEEEccCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFP-SAARRMDTLNDL-LAASDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~-~g~~~~~sL~eL-L~~ADVV~l~lPlT 229 (632)
.+.|++|.|+|.|..+++++-.|...|++|.+++|+....+. .+. .+.....++++. ...+|+||+|.|..
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G 90 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG 90 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccC
Confidence 468999999999999999999999999999999998643221 111 111122233332 45689999999973
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.98 E-value=0.00072 Score=60.15 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=63.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------cccccCc-eecCCHHHHhccCCEEEEcc--C
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPSAA-RRMDTLNDLLAASDVISLHC--A 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~----------~~~~~g~-~~~~sL~eLL~~ADVV~l~l--P 227 (632)
++|+|||.|.+|..+|..+...|. ++..||....... ....... ....+..+.+++||+|+++. |
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 479999999999999999987764 9999998764322 0000111 12234567789999999995 3
Q ss_pred CChh---------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 228 VTDE---------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 228 lT~~---------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
..+. +..++- .+.+....|.+++++++. .+|.-.
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN--Pvd~~~ 125 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMT 125 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC--ChHHHH
Confidence 3332 111111 124445568999999866 455433
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.96 E-value=0.0013 Score=58.74 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=57.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++|+|||.|.+|..+|-.+...+. ++..||......+ ..+.........-.+.+++||+|+++......
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 479999999999999998886655 8999998764332 01111111222335668899999998543321
Q ss_pred ---hH--------hhcc--HHHHhccCCCcEEEEcCC
Q 006758 232 ---TI--------QIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 232 ---T~--------~lI~--~~~L~~MK~GAvLINvgR 255 (632)
++ .++. .+.+....|.+++|+++.
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 118 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN 118 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence 11 1111 134555678999999866
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.91 E-value=0.00035 Score=60.87 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=58.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccccCc-----eecCCHHHH-hccCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFPSAA-----RRMDTLNDL-LAASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~~g~-----~~~~sL~eL-L~~ADVV~l~lPlT~~T~ 233 (632)
++|.|+|+|.+|+.+|+.|...|.+|+++|.++..... .+...+ .....|+++ +.++|.++.+.+..+ .
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~--~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE--V 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH--H
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH--H
Confidence 47999999999999999999999999999987643221 111111 112234444 678999988877533 3
Q ss_pred hhccHHHHhccCCCcEEE
Q 006758 234 QIINAECLQHIKPGAFLV 251 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLI 251 (632)
+++-....+.+.+..+++
T Consensus 79 N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp HHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHcCCceEEE
Confidence 455555666676666654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.91 E-value=0.00063 Score=61.32 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=59.9
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cc-cccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VT-FPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
|+|+|||.|.+|..+|-.|...|+ ++..||......+ .. ..........-.+.+++||+|+++.....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence 689999999999999998886664 8999998754211 00 11111111223456799999999876432
Q ss_pred -------h--------hHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 231 -------E--------TIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 231 -------~--------T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
. +..++. ...+....|.+++|+++.
T Consensus 82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 123 (146)
T d1hyha1 82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN 123 (146)
T ss_dssp GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 0 122221 234455678999999876
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.82 E-value=0.00067 Score=69.29 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=67.8
Q ss_pred CcEEEEEeCChhhHHHHHHHh-hCCC-EEEEECCCCCCCC------cc-cccCceecCCHHHHhccCCEEEEccCCChhh
Q 006758 162 GLVLGIVGRSASARALATRSL-SFKM-SVLYFDVPEGKGK------VT-FPSAARRMDTLNDLLAASDVISLHCAVTDET 232 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lk-afGm-~V~~~dr~~~~~~------~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T 232 (632)
-++++|||.|..+..-++.+. -++. +|.+|++++.... .. ....+..+.++++++..||||+++++. +.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas-~s~ 206 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTAD-KAY 206 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCC-SSE
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecccc-CCC
Confidence 468999999999998888665 5676 8999999864322 01 112234578999999999999998863 445
Q ss_pred HhhccHHHHhccCCCcEEEEcCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgR 255 (632)
..+|.. ..+|||+.|..+|.
T Consensus 207 ~Pv~~~---~~l~pG~hI~aiGs 226 (340)
T d1x7da_ 207 ATIITP---DMLEPGMHLNAVGG 226 (340)
T ss_dssp EEEECG---GGCCTTCEEEECSC
T ss_pred Ccccch---hhcCCCCEEeeccc
Confidence 578876 46889999999876
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00061 Score=62.73 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=51.7
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccc---------cC---ceec---CCHHHHhccCCEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFP---------SA---ARRM---DTLNDLLAASDVI 222 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~---------~g---~~~~---~sL~eLL~~ADVV 222 (632)
++.|++|.|||.|..|++++..|...|+ ++.+++|+....+.... .. .... ..+.+.+..+|+|
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 94 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence 5799999999999999999999999998 79999998654321100 00 0111 2345667889999
Q ss_pred EEccCCC
Q 006758 223 SLHCAVT 229 (632)
Q Consensus 223 ~l~lPlT 229 (632)
|++.|..
T Consensus 95 IN~Tp~G 101 (182)
T d1vi2a1 95 TNGTKVG 101 (182)
T ss_dssp EECSSTT
T ss_pred ccccCCc
Confidence 9999964
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.77 E-value=0.00092 Score=60.14 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=61.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCCCCC---------ccccc-CceecCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFK--MSVLYFDVPEGKGK---------VTFPS-AARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~~~~---------~~~~~-g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
..++|+|||.|.+|..+|..|...| -+|..||+.....+ ..+.. ......+.+ .+++||+|+++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence 4679999999999999999988766 48999998753111 01111 112233444 46899999998653
Q ss_pred Chh-----------hHhhcc--HHHHhccCCCcEEEEcCCChhhcH
Q 006758 229 TDE-----------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 229 T~~-----------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
... +..++. ...+..-.|.+++|+++. .+|.
T Consensus 83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN--Pvdv 126 (146)
T d1ez4a1 83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN--PVDI 126 (146)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS--SHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC--ccHH
Confidence 221 111221 224556678899999875 4443
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=96.74 E-value=0.0019 Score=62.70 Aligned_cols=108 Identities=14% Similarity=0.152 Sum_probs=75.5
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC-----CC---c------c----------cccCceecCCHHH
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK-----GK---V------T----------FPSAARRMDTLND 214 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~-----~~---~------~----------~~~g~~~~~sL~e 214 (632)
.|.|+||.|-|+|++|+.+|+.|...|++|++++..... .. . . ...+.....+.++
T Consensus 28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (242)
T d1v9la1 28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA 107 (242)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence 489999999999999999999999999999987643210 00 0 0 0011112223455
Q ss_pred Hhc-cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 215 LLA-ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 215 LL~-~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
++. .|||++-|.. .+.|+++....|+ -.+++-.+-+.+ ..++ .+.|.+..|.
T Consensus 108 i~~~~~DIliPcA~-----~~~I~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~ 160 (242)
T d1v9la1 108 IFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVV 160 (242)
T ss_dssp GGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred hccccccEEeecch-----hccccHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence 543 6999988753 5788888888886 568889999987 4455 3777777665
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.74 E-value=0.0017 Score=59.48 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=63.0
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------ccc-ccCceecCCHHHHhccCCEEEEcc
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTF-PSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~-~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
.+...+|+|||.|.+|..+|-.|...|. ++..||.+..... ..+ .........-.+.+.+||+|+++.
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 4567899999999999999999998777 8999998742211 001 111111122345688999999976
Q ss_pred CCCh---hhH--------hhcc--HHHHhccCCCcEEEEcCC
Q 006758 227 AVTD---ETI--------QIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 227 PlT~---~T~--------~lI~--~~~L~~MK~GAvLINvgR 255 (632)
-... +|+ .++- ...+....|.+++|+++.
T Consensus 97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 5432 122 1110 234455578999999876
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.73 E-value=0.00078 Score=62.29 Aligned_cols=40 Identities=10% Similarity=-0.034 Sum_probs=36.4
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.+|+||++.|.| -|.||+.+|+.|...|++|++++|+...
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~ 59 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK 59 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence 368999999999 7999999999999999999999998643
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.71 E-value=0.00093 Score=59.53 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=61.4
Q ss_pred cEEEEEeCChhhHHHHHHHhh--CCCEEEEECCCCCCCC---------cccccCceecCCHHHHhccCCEEEEccCC--C
Q 006758 163 LVLGIVGRSASARALATRSLS--FKMSVLYFDVPEGKGK---------VTFPSAARRMDTLNDLLAASDVISLHCAV--T 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lka--fGm~V~~~dr~~~~~~---------~~~~~g~~~~~sL~eLL~~ADVV~l~lPl--T 229 (632)
++|+|||.|.+|..+|..+.. +.-++..+|.+..... ..+...........+.+++||+|+++.-. .
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 80 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK 80 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence 479999999999999988764 4459999998753221 11111112223345568999999998643 2
Q ss_pred h-h--------hHhhcc--HHHHhccCCCcEEEEcCCChhhcH
Q 006758 230 D-E--------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 230 ~-~--------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
+ . +..++. .+.+....|++++|+++. .+|.
T Consensus 81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN--Pvd~ 121 (140)
T d1a5za1 81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN--PVDV 121 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHH
T ss_pred CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC--cHHH
Confidence 2 1 222221 235566678999999875 4444
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0017 Score=59.81 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=51.6
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCc-------eecCCHHHHhccCCEEEEccCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAA-------RRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~-------~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
..++|.|+| .|.||+.+++.|...|.+|.++.|++.........+. ....++.+++..+|+|+.++...
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~ 78 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence 467899999 7999999999999999999999987644321111211 12345678899999999988653
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.69 E-value=0.0035 Score=62.65 Aligned_cols=134 Identities=8% Similarity=0.124 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHHHhhcHHHHHHHHHhcCCCCCCCCCCCccccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 006758 115 AEEIADTVMALLLGLLRRTHLLARHALSASGWLGSVQPLCRGMRRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 115 a~aVAE~ALaliLal~Rrl~~~~~~~~~~g~W~~~~~~~~~~~~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.++++--++..+-.++++....... +. ...|.|+||.|=|+|++|..+|+.|...|++|++++..
T Consensus 4 ~eATG~GV~~~~~~~l~~~~~~~~~------gl---------~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~ 68 (293)
T d1hwxa1 4 ISATGRGVFHGIENFIENASYMSIL------GM---------TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGES 68 (293)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHH------TC---------CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred chHhHHHHHHHHHHHHHhcccchhc------cC---------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4667777777777777654322221 00 02489999999999999999999999999999988643
Q ss_pred CC-----CCC---------------cccccCceecCCHHHHhc-cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 195 EG-----KGK---------------VTFPSAARRMDTLNDLLA-ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 195 ~~-----~~~---------------~~~~~g~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
.. .+. ..+.. . ..+.++++. .|||++-|. +.+.|+.+....++ -.+|+-.
T Consensus 69 ~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~-ak~I~Eg 139 (293)
T d1hwxa1 69 DGSIWNPDGIDPKELEDFKLQHGTILGFPK--A-KIYEGSILEVDCDILIPAA-----SEKQLTKSNAPRVK-AKIIAEG 139 (293)
T ss_dssp TEEECCTTCCCHHHHHHHHHTTSSSTTCTT--S-CBCCSCGGGCCCSEEEECS-----SSSCBCTTTGGGCC-CSEEECC
T ss_pred chhhccccccchHHHHHHHHHcCCeecccc--c-ccCCcccccCCccEEeecc-----ccccccHHHHHHHh-hCEEecc
Confidence 21 000 00000 0 112233443 799997773 45889888888886 4588899
Q ss_pred CCChhhcHHHHHHHHHcCCcc
Q 006758 254 GSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 254 gRG~iVDe~AL~~AL~sg~I~ 274 (632)
+.|++.+ +| .+.|.+..|.
T Consensus 140 AN~P~t~-eA-~~~L~~~gI~ 158 (293)
T d1hwxa1 140 ANGPTTP-QA-DKIFLERNIM 158 (293)
T ss_dssp SSSCBCH-HH-HHHHHHTTCE
T ss_pred CCCCCCc-ch-HHHHHHCCCE
Confidence 9999654 44 3556665554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.00041 Score=62.79 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=62.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee---c---CC-HHHHhccCCEEEEccCCChhhH
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---M---DT-LNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~---~---~s-L~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.|.+|.|+|.|.+|...++.++.+|++|+++|++....+.....|+.. . .. .+......|+|+.++......
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~- 105 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI- 105 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence 689999999999999999999999999999999876544222222211 1 11 233445578888876643221
Q ss_pred hhccHHHHhccCCCcEEEEcCC
Q 006758 234 QIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgR 255 (632)
.+ ...+..++++..+|.+|-
T Consensus 106 -~~-~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 106 -DF-NIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp -CT-TTGGGGEEEEEEEEECCC
T ss_pred -hH-HHHHHHhhccceEEEecc
Confidence 12 345677888888888763
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00098 Score=59.86 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=63.7
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCcc-cccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKVT-FPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~~-~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
.+|||||+|.+|+. .+..++.+ +++|. ++|++....... ...+...++++++++++.|+|++++|..... .++ .
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~-~~~-~ 79 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF-DVV-S 79 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH-HHH-H
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcc-ccc-c
Confidence 36999999999986 46666655 77765 568876543311 1123445678999999999999999964322 222 2
Q ss_pred HHHhccCCC-cEEEEc-CCChhhcHHHHHHHHHcCC
Q 006758 239 ECLQHIKPG-AFLVNT-GSSQLLDDCAVKQLLIDGT 272 (632)
Q Consensus 239 ~~L~~MK~G-AvLINv-gRG~iVDe~AL~~AL~sg~ 272 (632)
..+. .| .+++.- ---.+-+...|.++.+...
T Consensus 80 ~al~---~gk~V~~EKPla~~~~e~~~l~~~a~~~~ 112 (164)
T d1tlta1 80 TLLN---AGVHVCVDKPLAENLRDAERLVELAARKK 112 (164)
T ss_dssp HHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHTT
T ss_pred cccc---ccceeeccccccCCHHHHHHHHHHHHHcC
Confidence 2322 23 455552 1122345555666655544
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.0014 Score=56.54 Aligned_cols=65 Identities=9% Similarity=0.079 Sum_probs=45.4
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce--ecCCHH---HHhc--cCCEEEE
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR--RMDTLN---DLLA--ASDVISL 224 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~--~~~sL~---eLL~--~ADVV~l 224 (632)
..+.+|||||-|-.|+-+|..++.+|++|.++|++.......+..... .+.+.+ ++.. .+|+|+.
T Consensus 9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~ 80 (111)
T d1kjqa2 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVP 80 (111)
T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEE
Confidence 356689999999999999999999999999999987654322222111 123333 4443 4688854
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.46 E-value=0.0038 Score=55.51 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=59.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---------cc-cc--cCceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---------VT-FP--SAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---------~~-~~--~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
++|+|||.|.+|..+|-.+...++ +++.+|....... .. .. .......+.+ .+++||+|+++....
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvvitag~~ 80 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIVVTSGAP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEEECCSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEEEeeecc
Confidence 589999999999999988876554 9999998764221 00 00 0112223444 568999999998532
Q ss_pred --hh-hH--------hhcc--HHHHhccCCCcEEEEcCCChhhcH
Q 006758 230 --DE-TI--------QIIN--AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 230 --~~-T~--------~lI~--~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
+. ++ .++. ...+....|.+++|+++. .+|.
T Consensus 81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN--PvDv 123 (142)
T d1uxja1 81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN--PLDA 123 (142)
T ss_dssp ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS--SHHH
T ss_pred CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC--chHH
Confidence 21 11 1111 123445567899999765 4444
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.43 E-value=0.001 Score=59.75 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=33.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.|.+|.|+|.|.||...++.++.+|++|+++|++...
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r 62 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR 62 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHH
Confidence 5789999999999999999999999999999988643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.002 Score=58.11 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=59.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee-----cCCHHHHh--------ccCCEEEEcc
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR-----MDTLNDLL--------AASDVISLHC 226 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~-----~~sL~eLL--------~~ADVV~l~l 226 (632)
.|.+|.|+|.|.||...+..++.+|+ +|++.|++....+.....|+.. ..+..+.. ...|+|+-++
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence 57899999999999999999999999 8999998865433221222211 12332222 2468888887
Q ss_pred CCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 227 AVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 227 PlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
+. +.+ + ...++.+++|..++.+|-
T Consensus 106 G~-~~~---~-~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 106 GA-EAS---I-QAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CC-HHH---H-HHHHHHSCTTCEEEECSC
T ss_pred CC-chh---H-HHHHHHhcCCCEEEEEec
Confidence 64 222 2 355677788877777664
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.40 E-value=0.0044 Score=59.83 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=78.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCC-----CC---------------cccccCceecCCHHHHhc
Q 006758 159 RCRGLVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGK-----GK---------------VTFPSAARRMDTLNDLLA 217 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~-----~~---------------~~~~~g~~~~~sL~eLL~ 217 (632)
++.|++|.|=|+|++|..+|+.|. .+|++|++++..... .. ..+ .+. ...+.++++.
T Consensus 28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 105 (234)
T d1b26a1 28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTY-PKG-ERITNEELLE 105 (234)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTC-SSC-EEECHHHHHT
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceecc-ccc-eeeccccccc
Confidence 479999999999999999999995 789999987643210 00 001 111 1235567766
Q ss_pred -cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcceEEeec
Q 006758 218 -ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLAGCALDG 280 (632)
Q Consensus 218 -~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~GAaLDV 280 (632)
.|||++-|. ..+.|+.+....++- .+++-.+-+.+..+ + .+.|.+..|. ++=|.
T Consensus 106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t~~-a-~~~L~~rgI~-~~PD~ 160 (234)
T d1b26a1 106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTTPE-A-DEILSRRGIL-VVPDI 160 (234)
T ss_dssp SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBCHH-H-HHHHHHTTCE-EECHH
T ss_pred cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCCHH-H-HHHHHHCCeE-EechH
Confidence 799997763 458899999999984 58889999887543 4 4667777665 45554
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.37 E-value=0.0044 Score=53.47 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=73.4
Q ss_pred cEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhccH
Q 006758 163 LVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIINA 238 (632)
Q Consensus 163 ktVGIIGl----G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~ 238 (632)
|+|+|||. |..|..+.+.|+.+|++|+.++|..... .|...+.+|.++-..-|++++++|- +.+..++.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~- 74 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAK- 74 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHH-
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCH-HHHHHHHH-
Confidence 67999994 6789999999999999999999875322 3666778999998899999999995 44555654
Q ss_pred HHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 239 ECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 239 ~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
+.+ .+...++++..|- ..+++.+.+++..|.
T Consensus 75 ~~~-~~g~k~v~~~~g~----~~~~~~~~a~~~gi~ 105 (116)
T d1y81a1 75 EAV-EAGFKKLWFQPGA----ESEEIRRFLEKAGVE 105 (116)
T ss_dssp HHH-HTTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred HHH-hcCCceEEeccch----hhHHHHHHHHHcCCE
Confidence 333 3455577776542 345667777766564
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.36 E-value=0.0016 Score=59.45 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=67.1
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEE-ECCCCCCCC-----cccccCceecCCHHHHhc--cCCEEEEccCCChhhH
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLY-FDVPEGKGK-----VTFPSAARRMDTLNDLLA--ASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~-----~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~T~ 233 (632)
.+|||||+|.||+..++.++.. +++|.+ +|++..... ..++.....+.++++++. ..|+|+++.|......
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~ 81 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE 81 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence 3699999999999999999876 778775 577643211 112223345689999985 4799999998643332
Q ss_pred hhccHHHHhccCCCc-EEEEc-CCChhhcHHHHHHHHHcCCcc
Q 006758 234 QIINAECLQHIKPGA-FLVNT-GSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 234 ~lI~~~~L~~MK~GA-vLINv-gRG~iVDe~AL~~AL~sg~I~ 274 (632)
. ....|+.|. ++|.- .--.+-+...|.+..++..+.
T Consensus 82 ~-----~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~ 119 (184)
T d1ydwa1 82 W-----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 119 (184)
T ss_dssp H-----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred h-----hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence 2 223344443 34431 112334556678887776665
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.34 E-value=0.0037 Score=56.37 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=59.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---------cccc--cCceecCCHHHHhccCCEEEEccCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---------VTFP--SAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---------~~~~--~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
..+|+|||.|.+|..+|..+..-++ ++..||......+ ..+. ..........+.+++||+|+++.-..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 3589999999999999988775554 8999998764222 0000 01111224456779999999987743
Q ss_pred hh---h-----H-hhc--cH-------HHHhccCCCcEEEEcCC
Q 006758 230 DE---T-----I-QII--NA-------ECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~---T-----~-~lI--~~-------~~L~~MK~GAvLINvgR 255 (632)
.. + + .++ |. +.+....|++++|+++.
T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN 126 (150)
T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 126 (150)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 21 1 1 111 21 23445568999999876
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.28 E-value=0.001 Score=60.59 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=33.3
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.|++..
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccc
Confidence 68999999999999999999999998 8999998764
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.27 E-value=0.0017 Score=65.28 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=66.0
Q ss_pred CcEEEEEeCChhhHHHHHHHhh-CCC-EEEEECCCCCCCCc----ccccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 162 GLVLGIVGRSASARALATRSLS-FKM-SVLYFDVPEGKGKV----TFPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka-fGm-~V~~~dr~~~~~~~----~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
-+++||||.|..+..-++.+.. +.. +|.+|+|+....+. ....+.....+..+.+..||||+++.| .+..+
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~ 201 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPV 201 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Ccccc
Confidence 4689999999999999998774 666 89999998643320 001122334567788899999999876 45577
Q ss_pred ccHHHHhccCCCcEEEEcCCC
Q 006758 236 INAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG 256 (632)
|..+ .++||+.++.+|.-
T Consensus 202 ~~~~---~l~~G~hv~~iGs~ 219 (320)
T d1omoa_ 202 VKAE---WVEEGTHINAIGAD 219 (320)
T ss_dssp BCGG---GCCTTCEEEECSCC
T ss_pred cchh---hcCCCCeEeecCCc
Confidence 8764 58999999999863
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.25 E-value=0.0023 Score=56.78 Aligned_cols=37 Identities=3% Similarity=0.007 Sum_probs=34.7
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.+|.|++|.|||-|.+|..-|+.|..+|++|.++++.
T Consensus 9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5699999999999999999999999999999999765
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.15 E-value=0.0035 Score=57.20 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=62.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------c-ccccC-ceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------V-TFPSA-ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~-~~~~g-~~~~~sL~eLL~~ADVV~l~l 226 (632)
+...+|+|||.|.+|..+|..|...|. ++..||....... . ..... .....+ .+.+.+||+|+++.
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d-~~~~~~adivvita 95 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD-YNVSANSKLVIITA 95 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS-GGGGTTEEEEEECC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc-hhhhccccEEEEec
Confidence 556789999999999999999987766 8999998743211 0 11111 112234 35568999999986
Q ss_pred CCC--h-hh--------Hhhcc--HHHHhccCCCcEEEEcCCChhhcH
Q 006758 227 AVT--D-ET--------IQIIN--AECLQHIKPGAFLVNTGSSQLLDD 261 (632)
Q Consensus 227 PlT--~-~T--------~~lI~--~~~L~~MK~GAvLINvgRG~iVDe 261 (632)
... + ++ ..++. ...+....|++++|+++. .+|.
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN--PvDv 141 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN--PVDI 141 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS--SHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC--cHHH
Confidence 442 2 11 12211 012344578999999977 4443
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.14 E-value=0.0037 Score=55.93 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=63.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCC-------ccccc--CceecCCHHHHhccCCEEEEccCC--
Q 006758 163 LVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGK-------VTFPS--AARRMDTLNDLLAASDVISLHCAV-- 228 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPl-- 228 (632)
.+|+||| .|.+|+.+|..|...|. ++..+|....... ..+.. ......+..+.+++||+|+++...
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 3799999 59999999999987766 7999998643221 00100 111234567889999999998653
Q ss_pred Chh---------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHH
Q 006758 229 TDE---------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDC 262 (632)
Q Consensus 229 T~~---------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~ 262 (632)
.+. +..++. .+.+....|.+++|.++. .+|.-
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~~ 123 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNST 123 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhhh
Confidence 221 222221 124445578999999876 56643
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.14 E-value=0.004 Score=55.71 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=61.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------cccccC--ceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK---------VTFPSA--ARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~~~~~g--~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+|+|||.|.+|..+|..+...|. ++..+|......+ ..+... .....+. +.+++||+|+++.-..
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~ 80 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR 80 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence 479999999999999998876555 8999998753211 011111 1123344 4688999999987542
Q ss_pred h---h--------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHH
Q 006758 230 D---E--------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDC 262 (632)
Q Consensus 230 ~---~--------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~ 262 (632)
. + +..++. ...+....|.+++|+++. .+|.-
T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN--PvDvm 124 (143)
T d1llda1 81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN--PVDIA 124 (143)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS--SHHHH
T ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC--chHHH
Confidence 2 1 222221 234556678899999874 45543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.13 E-value=0.0011 Score=60.48 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=52.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcc---c----cc---CceecCCHHHHhccCCEEEEccCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVT---F----PS---AARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~---~----~~---g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
+++|++|.|||.|..+++++..|...| +|.+++|+....+.. + .. ......+++..+..+|+|+++.|.
T Consensus 15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~ 93 (177)
T d1nvta1 15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI 93 (177)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcc
Confidence 489999999999999999999998887 999999986433210 0 00 012345677778899999999997
Q ss_pred C
Q 006758 229 T 229 (632)
Q Consensus 229 T 229 (632)
.
T Consensus 94 g 94 (177)
T d1nvta1 94 G 94 (177)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.06 E-value=0.0022 Score=56.18 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=31.5
Q ss_pred cEEEEE-eCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 163 LVLGIV-GRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGII-GlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
++|+|| |.|.||+.+|++|...|++|.+++|++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 479999 8999999999999999999999999864
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.06 E-value=0.024 Score=54.68 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=73.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHh-hCCCEEEEECCCCCCC--------------------CcccccCceecCCHHHHh-
Q 006758 159 RCRGLVLGIVGRSASARALATRSL-SFKMSVLYFDVPEGKG--------------------KVTFPSAARRMDTLNDLL- 216 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~Lk-afGm~V~~~dr~~~~~--------------------~~~~~~g~~~~~sL~eLL- 216 (632)
.|.|+||.|-|+|++|..+|+.|. .+|++|+++....... ...++ +... .+.++++
T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~-~~~~-~~~~~i~~ 106 (239)
T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFP-GATN-ITNEELLE 106 (239)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCT-TSEE-ECHHHHHH
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCC-CCee-eccccccc
Confidence 389999999999999999999885 6899998875432100 01111 1222 2445554
Q ss_pred ccCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 217 AASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 217 ~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
..|||++-|.- .+.|+.+....++ -.+++-.+-+.+.. ++ .+.|.+..|.
T Consensus 107 ~~~DIl~PcA~-----~~~I~~~~a~~i~-ak~I~e~AN~p~t~-ea-~~~L~~rgI~ 156 (239)
T d1gtma1 107 LEVDVLAPAAI-----EEVITKKNADNIK-AKIVAEVANGPVTP-EA-DEILFEKGIL 156 (239)
T ss_dssp SCCSEEEECSC-----SCCBCTTGGGGCC-CSEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred ccccEEeeccc-----cccccHHHHHhcc-ccEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence 46999987754 4788888888886 45888999998754 34 4667766554
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.05 E-value=0.0045 Score=54.25 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=64.5
Q ss_pred cccCcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----c-----cc-cCceecCCHHHHhc
Q 006758 159 RCRGLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKV-----T-----FP-SAARRMDTLNDLLA 217 (632)
Q Consensus 159 ~L~GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----~-----~~-~g~~~~~sL~eLL~ 217 (632)
.+.+++|||+|+ +.-...+++.|...|++|.+|||....... . .+ .....+.++.+++.
T Consensus 10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA 89 (136)
T ss_dssp TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence 367899999998 467788999999999999999985321110 0 00 11234579999999
Q ss_pred cCCEEEEccCCChhhHhhccHHHHhccCCCcEEEEc
Q 006758 218 ASDVISLHCAVTDETIQIINAECLQHIKPGAFLVNT 253 (632)
Q Consensus 218 ~ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINv 253 (632)
.||+|+++++-. +- .+....++++.+++++
T Consensus 90 ~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~ 119 (136)
T d1mv8a3 90 SSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL 119 (136)
T ss_dssp HCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES
T ss_pred hceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC
Confidence 999999999852 22 2345567778899997
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.05 E-value=0.005 Score=54.86 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=62.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC--EEEEECCCCCCCC----------ccccc--CceecCCHHHHhccCCEEEEccCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM--SVLYFDVPEGKGK----------VTFPS--AARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm--~V~~~dr~~~~~~----------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++|+|||.|.+|..+|-.+...|. ++..||....... ..... ......+ .+.+++||+|+++...
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiVvitag~ 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEEEEeccc
Confidence 479999999999999998886554 7999997753211 00111 1122234 4688999999998753
Q ss_pred --Chh---------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 229 --TDE---------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 229 --T~~---------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
++. +..++. ...+....|.+++|+++. .+|.-.
T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN--PvD~~t 125 (142)
T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMT 125 (142)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHH
T ss_pred cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC--ChHHHH
Confidence 221 222221 234555678899999987 444433
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0018 Score=58.33 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=54.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce---ecCC---HHHHhccCCEEEEccCCChhhHh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---RMDT---LNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~---~~~s---L~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
.|.+|.|+|.|.||...++.++.+|+++++.+++....+.....++. .+.+ ........|+++.++......
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~-- 107 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNL-- 107 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCH--
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhH--
Confidence 68999999999999999999999999999999876443211111211 1111 112233466666666532211
Q ss_pred hccHHHHhccCCCcEEEEcC
Q 006758 235 IINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvg 254 (632)
...+..++++..++.+|
T Consensus 108 ---~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 108 ---DDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp ---HHHHTTEEEEEEEEECC
T ss_pred ---HHHHHHHhcCCEEEEec
Confidence 23345566666666554
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.98 E-value=0.0013 Score=60.12 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=49.1
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCc---ccc--cCceecCCHHHHhccCCEEEEccCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKV---TFP--SAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~---~~~--~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
.+.|++|.|+|.|..|++++..|..-+.+|.+++|+....+. .+. .........+..+..+|+|++|.|..
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 368999999999999999999988878899999998643321 010 01111111222357789999999863
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=95.89 E-value=0.011 Score=52.18 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=74.2
Q ss_pred cCcEEEEEeC----ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGR----SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGl----G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
.-++|+|||. +..|..+++.|+.+|+++..+.++..... -.+...+.++.++-..-|+|++++|. +.+..++
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---i~g~~~~~~l~~i~~~iD~v~v~~p~-~~v~~~v 87 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHL 87 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---eeceecccchhhccCCCceEEEeccH-HHHHHHH
Confidence 5678999997 78999999999999999999998753322 23556678999998889999999993 4455665
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
.+ . ..+...++++..| ..++++ .+..++..|
T Consensus 88 ~~-~-~~~g~k~i~~q~G---~~~~e~-~~~a~~~Gi 118 (136)
T d1iuka_ 88 PE-V-LALRPGLVWLQSG---IRHPEF-EKALKEAGI 118 (136)
T ss_dssp HH-H-HHHCCSCEEECTT---CCCHHH-HHHHHHTTC
T ss_pred HH-H-HhhCCCeEEEecC---ccCHHH-HHHHHHcCC
Confidence 43 2 3356678888765 344544 444444444
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.005 Score=55.81 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=44.4
Q ss_pred cEEEEEeCChhhHHHHHHHh-----hC-CCEEEEECCCCCCCCc---------ccccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVGRSASARALATRSL-----SF-KMSVLYFDVPEGKGKV---------TFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lk-----af-Gm~V~~~dr~~~~~~~---------~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
++|.|||.|.+|...+-... .+ +-++..+|.+...... ..........+.++.+++||+|++++-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 47999999999977774322 12 3589999987643220 011112334678899999999999976
Q ss_pred C
Q 006758 228 V 228 (632)
Q Consensus 228 l 228 (632)
.
T Consensus 81 ~ 81 (162)
T d1up7a1 81 P 81 (162)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.72 E-value=0.0031 Score=55.95 Aligned_cols=89 Identities=12% Similarity=0.191 Sum_probs=55.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceec-----CC----HHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRM-----DT----LNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~-----~s----L~eLL~~ADVV~l~lPlT~~ 231 (632)
.|.+|.|+|.|.||...+..++.+|++|++.+++..........|+... .+ +.+.....|.++.+.+ .+.
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ 105 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP 105 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence 6889999999999999999999999999999987643321111121110 11 2233344555555543 233
Q ss_pred hHhhccHHHHhccCCCcEEEEcC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvg 254 (632)
+ + ...+..|+++..++.+|
T Consensus 106 ~---~-~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 106 A---F-QSAYNSIRRGGACVLVG 124 (168)
T ss_dssp H---H-HHHHHHEEEEEEEEECC
T ss_pred H---H-HHHHHHhccCCceEecc
Confidence 2 2 34566677777777765
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.68 E-value=0.0081 Score=52.66 Aligned_cols=107 Identities=8% Similarity=0.132 Sum_probs=73.6
Q ss_pred ccCcEEEEEeC----ChhhHHHHHHHhhCC-CEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 160 CRGLVLGIVGR----SASARALATRSLSFK-MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 160 L~GktVGIIGl----G~IG~~vA~~LkafG-m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
+.-++|+|||. |..|..+.+.|+..| .+|+.++|.... -.|...+.+|.++-...|++++++|. +.+..
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-----i~G~~~y~sl~dlp~~vDlvvi~vp~-~~~~~ 79 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-----VQGVKAYKSVKDIPDEIDLAIIVVPK-RFVKD 79 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-----ETTEECBSSTTSCSSCCSEEEECSCH-HHHHH
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-----cCCeEeecchhhcCCCCceEEEecCh-HHhHH
Confidence 46789999997 899999999999765 699999987632 24667788999998899999999994 55666
Q ss_pred hccHHHHhccCCCcEEEEcCCCh-----hhcHHHHHHHHHcCCc
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQ-----LLDDCAVKQLLIDGTL 273 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~-----iVDe~AL~~AL~sg~I 273 (632)
++. +..+.=-++++++--|-++ ...+++|.+..++..+
T Consensus 80 ~~~-~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi 122 (129)
T d2csua1 80 TLI-QCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM 122 (129)
T ss_dssp HHH-HHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHH-HHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence 663 3333222345555433333 2334556666665444
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=95.67 E-value=0.003 Score=56.68 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=64.2
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEEEECCCCCCCCccc-ccC-ceecCCHHHHhc-cCCEEEEccCCChhhHhhcc
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVLYFDVPEGKGKVTF-PSA-ARRMDTLNDLLA-ASDVISLHCAVTDETIQIIN 237 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~~~dr~~~~~~~~~-~~g-~~~~~sL~eLL~-~ADVV~l~lPlT~~T~~lI~ 237 (632)
.+|||||+|.+|+. ....++.+ ++++.++|++........ ..+ ...+.+.++++. +.|+|++++|.......+
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~-- 79 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLA-- 79 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHH--
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccc--
Confidence 47999999999976 56667665 678889998753322110 011 123567788775 569999999864332222
Q ss_pred HHHHhccCCCcEEEEcC-CChhhcHHHHHHHHHcCCcc
Q 006758 238 AECLQHIKPGAFLVNTG-SSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 238 ~~~L~~MK~GAvLINvg-RG~iVDe~AL~~AL~sg~I~ 274 (632)
...+.. .. .+|+.-= --.+-+...|.++.++..+.
T Consensus 80 ~~al~~-gk-~V~~EKP~~~~~~e~~~l~~~a~~~~~~ 115 (167)
T d1xeaa1 80 AFFLHL-GI-PTFVDKPLAASAQECENLYELAEKHHQP 115 (167)
T ss_dssp HHHHHT-TC-CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred cccccc-cc-ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 233332 21 3666431 22334556677777765553
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.65 E-value=0.011 Score=53.45 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=57.4
Q ss_pred cEEEEEeCChhhHH-HHHHHhhC-CCEEEEE-CCCCCCCCccc--ccCce-ecCCHHHHh-----ccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASARA-LATRSLSF-KMSVLYF-DVPEGKGKVTF--PSAAR-RMDTLNDLL-----AASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~~~-dr~~~~~~~~~--~~g~~-~~~sL~eLL-----~~ADVV~l~lPlT~~ 231 (632)
.+|||||.|.||+. +.+.++.+ ..++..+ +++.......+ ..+.. ...++++++ .+.|+|+.++|....
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h 84 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH 84 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence 57999999999986 56778766 4466554 66653221111 12222 233455554 467999999985333
Q ss_pred hHhhccHHHHhccCCCcEEEEcCC
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.=.+..+...+.|.++|+-+.
T Consensus 85 ---~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 85 ---VQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp ---HHHHHHHHHHCTTCEEEECST
T ss_pred ---HHhHHHHHHHHcCCEEEEccc
Confidence 223345667899999999876
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.58 E-value=0.02 Score=50.79 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=72.9
Q ss_pred cCcEEEEEeCC----hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 161 RGLVLGIVGRS----ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 161 ~GktVGIIGlG----~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
.-++|+|||.. ..|..+++.|+.+|++|+.++|..... .|...+.+|.++-..-|+|++++|- ..+..++
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~ 91 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV 91 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeCH-HHHHHHH
Confidence 56899999964 799999999999999999999875322 3566678999999899999999994 3344554
Q ss_pred cHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 237 NAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.+ . ..+...++++..|- .+++. .+.+++..+.
T Consensus 92 ~e-~-~~~g~k~v~~~~G~---~~ee~-~~~a~~~gi~ 123 (139)
T d2d59a1 92 EQ-A-IKKGAKVVWFQYNT---YNREA-SKKADEAGLI 123 (139)
T ss_dssp HH-H-HHHTCSEEEECTTC---CCHHH-HHHHHHTTCE
T ss_pred HH-H-HHhCCCEEEEeccc---cCHHH-HHHHHHCCCE
Confidence 33 3 33456678887663 34443 4444444443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.025 Score=50.36 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=61.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHh---hCCCEEEEECCCCCCCC-------ccccc--CceecCCHHHHhccCCEEEEccCC-
Q 006758 163 LVLGIVGR-SASARALATRSL---SFKMSVLYFDVPEGKGK-------VTFPS--AARRMDTLNDLLAASDVISLHCAV- 228 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lk---afGm~V~~~dr~~~~~~-------~~~~~--g~~~~~sL~eLL~~ADVV~l~lPl- 228 (632)
++|+|||. |.+|..+|-.|. .++-++..+|....... ..... ......+..+.+++||+|+++.-.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence 47999995 999999998764 35679999997542110 00000 111113345578899999998743
Q ss_pred -Chh---------hHhhcc--HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 229 -TDE---------TIQIIN--AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 229 -T~~---------T~~lI~--~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
++. +..++- .+.+....|.+++|.++. .+|.-.
T Consensus 81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN--PvD~m~ 125 (145)
T d2cmda1 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN--PVNTTV 125 (145)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--SHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC--CchHHH
Confidence 221 222221 245566678999999976 455433
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.43 E-value=0.0027 Score=57.94 Aligned_cols=37 Identities=8% Similarity=-0.100 Sum_probs=33.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK 197 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~ 197 (632)
.|.+|.|+|.|.||...++.++.+|+ +|++.|++...
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r 64 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC 64 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh
Confidence 58899999999999999999999998 79999987643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.39 E-value=0.004 Score=55.51 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=33.9
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.|.+|.|+|.|.||...+..++.+|++|++.++++..
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~ 63 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAK 63 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhH
Confidence 5889999999999999999999999999999987643
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.36 E-value=0.033 Score=49.58 Aligned_cols=95 Identities=13% Similarity=0.280 Sum_probs=61.0
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCC-CCC----cccccCceecCCHHHHhccCCEEEEccCCChh
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEG-KGK----VTFPSAARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~~-~~~----~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
|.|++|+|||= |++..+++..+..||+++.++-+... ... ...........++++.+.++|+|...---...
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~ 80 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 80 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence 57999999996 45899999999999998766554321 111 11122345567899999999998754211110
Q ss_pred -----------hHhhccHHHHhccCCCcEEEEcC
Q 006758 232 -----------TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 232 -----------T~~lI~~~~L~~MK~GAvLINvg 254 (632)
..-.++.+.++.++++++|..+.
T Consensus 81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L 114 (153)
T d1pg5a2 81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 114 (153)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence 01124666666666666666553
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.34 E-value=0.011 Score=54.09 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=45.4
Q ss_pred CcEEEEEeCChhhHHHHH---HHh--hC-CCEEEEECCCCCCCC----------c--ccccCceecCCHHHHhccCCEEE
Q 006758 162 GLVLGIVGRSASARALAT---RSL--SF-KMSVLYFDVPEGKGK----------V--TFPSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~---~Lk--af-Gm~V~~~dr~~~~~~----------~--~~~~g~~~~~sL~eLL~~ADVV~ 223 (632)
..+|+|||.|.+|..++- .++ .+ +-+|..+|.++...+ . ..........++++.+..||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 468999999999976443 332 33 459999999864322 0 01112334568999999999999
Q ss_pred EccCC
Q 006758 224 LHCAV 228 (632)
Q Consensus 224 l~lPl 228 (632)
+++-.
T Consensus 82 ~~~~~ 86 (171)
T d1obba1 82 NTAMV 86 (171)
T ss_dssp ECCCT
T ss_pred eeccc
Confidence 98643
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0098 Score=48.22 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=32.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
|||||||-|-.|+-++..++.+|++|.++|+....
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 68999999999999999999999999999998643
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.27 E-value=0.0092 Score=55.22 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=43.3
Q ss_pred EEEEEeCChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc----cc---------------cCceecCCHHHHhccCCEEE
Q 006758 164 VLGIVGRSASARALATRSLSF-KMSVLYFDVPEGKGKVT----FP---------------SAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~----~~---------------~g~~~~~sL~eLL~~ADVV~ 223 (632)
+|||.|+|+||+.+++.+... +++|++++......... +. .+......+.+++.++|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 699999999999999999865 68888875332111100 00 01112235677778888888
Q ss_pred EccCCC
Q 006758 224 LHCAVT 229 (632)
Q Consensus 224 l~lPlT 229 (632)
-|.|.-
T Consensus 83 ecTG~f 88 (178)
T d1b7go1 83 DTTPNG 88 (178)
T ss_dssp ECCSTT
T ss_pred ECCCCc
Confidence 888853
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.26 E-value=0.026 Score=51.27 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=60.0
Q ss_pred cEEEEEeCChhh--HHHHHHHhh---CC-CEEEEECCCCCCC--C--c----------ccccCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVGRSASA--RALATRSLS---FK-MSVLYFDVPEGKG--K--V----------TFPSAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIGlG~IG--~~vA~~Lka---fG-m~V~~~dr~~~~~--~--~----------~~~~g~~~~~sL~eLL~~ADVV 222 (632)
.+|.|||.|.+| ..++..++. |. -++..+|.++... + . ..........+..+.++.||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 479999999887 445555543 33 4999999876321 1 0 0111222456788899999999
Q ss_pred EEccCCChh-----------hHhh--------------------cc--HHHHhccCCCcEEEEcCCC
Q 006758 223 SLHCAVTDE-----------TIQI--------------------IN--AECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 223 ~l~lPlT~~-----------T~~l--------------------I~--~~~L~~MK~GAvLINvgRG 256 (632)
+++...... ..|+ +- ...+....|+|+|||++--
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNP 148 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNP 148 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCCh
Confidence 999975431 1111 10 2455667799999999874
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.25 E-value=0.0051 Score=55.67 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=55.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee---cCCH-HH--HhccCCEEEEccCCChhhH
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR---MDTL-ND--LLAASDVISLHCAVTDETI 233 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~---~~sL-~e--LL~~ADVV~l~lPlT~~T~ 233 (632)
.|.+|.|.|. |.+|....+.++.+|++|++.+++....+.....|+.. +.+. ++ ....+|+|+-+.. + +
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~-~- 102 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--K-E- 102 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--T-T-
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--h-h-
Confidence 6889999995 99999999999999999999987754333222222211 1111 11 1234677776544 1 1
Q ss_pred hhccHHHHhccCCCcEEEEcC
Q 006758 234 QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvg 254 (632)
+ ...++.++++..+|.+|
T Consensus 103 --~-~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 103 --V-EESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --H-HHHHTTEEEEEEEEEC-
T ss_pred --H-HHHHHHHhcCCcEEEEe
Confidence 1 34566777777777765
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.14 E-value=0.064 Score=48.15 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=65.3
Q ss_pred ccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
|.|++|++||=|+ +..+++..+..||++|.++.|..-.....+ ........++++.+..+|+|..-.=
T Consensus 2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~~ 81 (163)
T d1pvva2 2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW 81 (163)
T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecce
Confidence 7899999999754 667888888999999999998642221100 0122345789999999999987531
Q ss_pred CCh------h------hHhhccHHHHhccCCCcEEEEcC
Q 006758 228 VTD------E------TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 228 lT~------~------T~~lI~~~~L~~MK~GAvLINvg 254 (632)
... + ..-.++.+.++.+|++++|.-+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl 120 (163)
T d1pvva2 82 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 120 (163)
T ss_dssp CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence 111 1 11245778888888888887765
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.039 Score=49.64 Aligned_cols=95 Identities=7% Similarity=0.018 Sum_probs=63.8
Q ss_pred ccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCccc-----------ccCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTF-----------PSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~-----------~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
|.|++|+|||=|+ +..+++..+..||+++.++.|..-...... ........++++.+..+|+|.....
T Consensus 2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~ 81 (170)
T d1otha2 2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW 81 (170)
T ss_dssp CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeece
Confidence 7899999999753 445566666779999999998643221000 1123456799999999999998765
Q ss_pred CChhh------------HhhccHHHHhccCCCcEEEEcC
Q 006758 228 VTDET------------IQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 228 lT~~T------------~~lI~~~~L~~MK~GAvLINvg 254 (632)
..... .-.++.+.+..++++++|..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl 120 (170)
T d1otha2 82 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL 120 (170)
T ss_dssp SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred ecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence 43321 1225666777777777777664
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=95.12 E-value=0.009 Score=58.36 Aligned_cols=109 Identities=9% Similarity=0.080 Sum_probs=67.2
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECC--------CCCCCCcccc-------------------cCceecCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDV--------PEGKGKVTFP-------------------SAARRMDT 211 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr--------~~~~~~~~~~-------------------~g~~~~~s 211 (632)
.|.|+||.|=|+|++|+.+|+.|...|++|++++. ..-....... .+...+ +
T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 111 (255)
T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-P 111 (255)
T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-E
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-c
Confidence 47999999999999999999999999999987642 2211100000 001111 1
Q ss_pred HHH-HhccCCEEEEccCCChhhHhhccHHHHhccCC-C-cEEEEcCCChhhcHHHHHHHHHcCCcc
Q 006758 212 LND-LLAASDVISLHCAVTDETIQIINAECLQHIKP-G-AFLVNTGSSQLLDDCAVKQLLIDGTLA 274 (632)
Q Consensus 212 L~e-LL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK~-G-AvLINvgRG~iVDe~AL~~AL~sg~I~ 274 (632)
.++ +-..|||++-| .+.+.|+.+....++. + -+++--+.+++.++. ....|+++.|.
T Consensus 112 ~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea-~~~ll~~~gI~ 171 (255)
T d1bgva1 112 GEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEA-LRFLMQQPNMV 171 (255)
T ss_dssp TCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH-HHHHHHCTTCE
T ss_pred hhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchHH-HHHHHHhcCCE
Confidence 122 23458888654 3557788777777753 3 377777787766553 33345554443
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.11 E-value=0.021 Score=50.76 Aligned_cols=92 Identities=16% Similarity=0.284 Sum_probs=57.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCC-----------cccccCc-eecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGK-----------VTFPSAA-RRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm--~V~~~dr~~~~~~-----------~~~~~g~-~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+|+||| .|.+|+.+|-.+..-+. ++..+|....... ..+.... ....+. +.+.+||+|+++.-
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG 79 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG 79 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence 3799999 69999999999986665 8999996422110 0111111 122343 45689999999854
Q ss_pred C--Chh---------hHhhcc--HHHHhccCCCcEEEEcCC
Q 006758 228 V--TDE---------TIQIIN--AECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 228 l--T~~---------T~~lI~--~~~L~~MK~GAvLINvgR 255 (632)
. .+. +..++. ...+....|.+++|.++.
T Consensus 80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN 120 (142)
T d1o6za1 80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (142)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence 3 221 222221 235566778899999865
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.08 E-value=0.0045 Score=56.15 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=46.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCccc-ccCceecCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTF-PSAARRMDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~-~~g~~~~~sL~eLL~~ADVV~l~lPl 228 (632)
++++|.|||.|..|++++..|+..|+ +|.+++|+....+... ..+......+. ..++|+||+|.|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence 68899999999999999999999998 7999999864322100 01111222222 2468888888885
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=95.07 E-value=0.046 Score=48.80 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=51.1
Q ss_pred ccCcEEEEEeC--ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR--SASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl--G~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
|.|++|++||= .++..++...+..||++|.++.|..-.... ..........++++.+..+|+|..-.
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 57999999993 579999999999999999999886422110 00112334578999999999998865
Q ss_pred C
Q 006758 227 A 227 (632)
Q Consensus 227 P 227 (632)
-
T Consensus 81 ~ 81 (161)
T d1vlva2 81 W 81 (161)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.99 E-value=0.014 Score=52.24 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=54.2
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce-----ecCCHHHHh------ccCCEEEEccCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR-----RMDTLNDLL------AASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~-----~~~sL~eLL------~~ADVV~l~lPl 228 (632)
.|.+|.|.|. |.+|...++.++.+|++|++..++....+.....++. ...++.+-+ ...|+|+.++..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~ 104 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG 104 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence 5889999885 9999999999999999999987664322211111111 011222222 236777766652
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
++ + ...+..|+++..+|.+|.
T Consensus 105 --~~---~-~~~~~~l~~~G~~v~~G~ 125 (183)
T d1pqwa_ 105 --EA---I-QRGVQILAPGGRFIELGK 125 (183)
T ss_dssp --HH---H-HHHHHTEEEEEEEEECSC
T ss_pred --hH---H-HHHHHHhcCCCEEEEEcc
Confidence 21 1 345566777777777654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=94.74 E-value=0.0098 Score=54.03 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=60.7
Q ss_pred cEEEEEeCChhhHHH-HHHHhhCC--CEEE-EECCCCCCCCccc-ccC-ceecCCHHHHhcc--CCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARAL-ATRSLSFK--MSVL-YFDVPEGKGKVTF-PSA-ARRMDTLNDLLAA--SDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~v-A~~LkafG--m~V~-~~dr~~~~~~~~~-~~g-~~~~~sL~eLL~~--ADVV~l~lPlT~~T~~ 234 (632)
.+|||||+|.+|+.+ +..++.++ ++|. ++|++....+... ..+ ...+.++++++.. .|+|++++|......
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~- 82 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP- 82 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH-
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc-
Confidence 479999999999874 67777653 5666 5687653322100 012 2346899999864 689999998533221
Q ss_pred hccHHHHhccCCCcEEEEcCC-ChhhcHHHHHHHHHcCCc
Q 006758 235 IINAECLQHIKPGAFLVNTGS-SQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgR-G~iVDe~AL~~AL~sg~I 273 (632)
+-...++.= -.+++.-== -.+-+..+|.++.++..+
T Consensus 83 -~~~~al~~g--k~V~~EKPl~~~~~e~~~l~~~~~~~~~ 119 (181)
T d1zh8a1 83 -FIEKALRKG--VHVICEKPISTDVETGKKVVELSEKSEK 119 (181)
T ss_dssp -HHHHHHHTT--CEEEEESSSSSSHHHHHHHHHHHHHCSS
T ss_pred -ccccccccc--hhhhcCCCCcCCHHHHHHHHHHHHHhCC
Confidence 112233321 145554311 123444556666665443
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.73 E-value=0.041 Score=48.78 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=52.1
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCc-------ccccCceecCCHHHHhccCCEEEEccC
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
|.|++|+|||= +++..+++..+..||+++.++.|..-.... ..........++++.+..+|+|....-
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~ 79 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI 79 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence 78999999998 689999999999999999999886432221 011123346789999999999887654
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.70 E-value=0.05 Score=49.95 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=66.2
Q ss_pred cccCcEEEEEeC--ChhhHHHHHHHhhCCCEEEEECCCCCCCCcc-----------cccCceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGR--SASARALATRSLSFKMSVLYFDVPEGKGKVT-----------FPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGl--G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~-----------~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.|.|.+|++||= .++..+++..+..||++|.++.|..-..... .........++++.++.+|||..-
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~ 81 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 81 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence 378999999994 4899999999999999999999854221100 111233467899999999999875
Q ss_pred cCCCh----h----------hHhhccHHHHhccCCCcEEEEcC
Q 006758 226 CAVTD----E----------TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 226 lPlT~----~----------T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.=... + ...+.+...+..+|++++|.-+.
T Consensus 82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L 124 (185)
T d1dxha2 82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 124 (185)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence 53211 1 01222344555678899998877
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.60 E-value=0.0067 Score=54.83 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=30.6
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEE-EEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSV-LYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V-~~~dr~~~ 196 (632)
.|.+|.|+|.|.||...+..++.+|+++ ++.|++..
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~ 64 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES 64 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH
Confidence 6889999999999999999999999954 55676653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.55 E-value=0.046 Score=48.60 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=57.9
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCC---------c---ccccCce---ecCCHHHHhccCCEEEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGK---------V---TFPSAAR---RMDTLNDLLAASDVISL 224 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~---------~---~~~~g~~---~~~sL~eLL~~ADVV~l 224 (632)
++|+|||. |.+|+.+|..+...|. ++..+|....... . ....... ...+-.+.+++||||++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 47999995 9999999999998775 9999998642110 0 0000011 11223467889999999
Q ss_pred cc--CCChh-hHh-hc--c-------HHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 225 HC--AVTDE-TIQ-II--N-------AECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 225 ~l--PlT~~-T~~-lI--~-------~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
+. |..+. ++- ++ | ...+....|.++|| + ...+|.-.
T Consensus 81 tAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iiv-V--tNPvD~mt 129 (145)
T d1hyea1 81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFV-I--TNPVDVMT 129 (145)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE-C--SSSHHHHH
T ss_pred ecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEE-E--cCchHHHH
Confidence 84 43332 211 11 1 12333344677776 6 35676444
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.018 Score=54.34 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=35.1
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.|+||++.|.|.+. ||+++|+.|...|++|++.+++...
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~ 41 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG 41 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 58999999999876 9999999999999999999987643
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.45 E-value=0.044 Score=46.24 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=48.6
Q ss_pred CcEEEEEeC----------ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEc
Q 006758 162 GLVLGIVGR----------SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 162 GktVGIIGl----------G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.++|||+|+ ..-.-.+.+.|...|++|.+|||...... .........++++++..||+|++.
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~ 86 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTN 86 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEc
Confidence 468999998 45678899999999999999999975432 223344567999999999987654
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.12 Score=45.79 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=61.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHhh----CCCEEEEECCCCCCCCc-ccccCc-eec-CCHHHHhccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGR-SASARALATRSLS----FKMSVLYFDVPEGKGKV-TFPSAA-RRM-DTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lka----fGm~V~~~dr~~~~~~~-~~~~g~-~~~-~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
++|||||. |.+|+.+.++|.. .-.++..+..+...... .+.... ... ..-.+.+..+|++++++|.... ..
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s-~~ 80 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT-NE 80 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH-HH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH-HH
Confidence 47999998 9999999986643 23477777655433321 111111 111 1122457899999999985322 22
Q ss_pred hccHHHHhccCCCcEEEEcCCChh-----------hcHHHHHHHHHcC
Q 006758 235 IINAECLQHIKPGAFLVNTGSSQL-----------LDDCAVKQLLIDG 271 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG~i-----------VDe~AL~~AL~sg 271 (632)
+ ...+..-..++++|+.+..-- |+.+.|..++..|
T Consensus 81 ~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 81 I--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp H--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred h--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence 2 223333344467788776433 3455677777753
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=94.30 E-value=0.013 Score=55.29 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=46.7
Q ss_pred cCcEEEEEeCChhhHH-HHHHHhhC-CCEEE-EECCCCCCCCc---cc--c-cCceecCCHHHHhcc--CCEEEEccCCC
Q 006758 161 RGLVLGIVGRSASARA-LATRSLSF-KMSVL-YFDVPEGKGKV---TF--P-SAARRMDTLNDLLAA--SDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~-vA~~Lkaf-Gm~V~-~~dr~~~~~~~---~~--~-~g~~~~~sL~eLL~~--ADVV~l~lPlT 229 (632)
+--+|||||+|.||+. ++..++.. +++|. ++|++....+. .+ + .....+.++++++.. .|+|++++|..
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~ 111 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS 111 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence 4568999999999974 66666655 78877 66887533221 11 1 112345789999864 78999998853
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.25 E-value=0.039 Score=50.03 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=33.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG 198 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~ 198 (632)
.|.+|.|+|.|.||...+..++.+|+ +|++.|++....
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~ 66 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF 66 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH
Confidence 68899999999999999999999998 688888876543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.19 E-value=0.048 Score=49.61 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=44.6
Q ss_pred CcEEEEEeCChhhHHHH--HHHhh---C-CCEEEEECCCCCCCC------------cccccCceecCCHHHHhccCCEEE
Q 006758 162 GLVLGIVGRSASARALA--TRSLS---F-KMSVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA--~~Lka---f-Gm~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~ADVV~ 223 (632)
..+|.|||.|.+|...+ ..++. | +-+|..+|......+ ...+.......+..|.++.||+|+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 45799999999987633 33332 2 248999998764322 011112234568899999999999
Q ss_pred EccCC
Q 006758 224 LHCAV 228 (632)
Q Consensus 224 l~lPl 228 (632)
++.-.
T Consensus 83 itag~ 87 (167)
T d1u8xx1 83 AHIRV 87 (167)
T ss_dssp ECCCT
T ss_pred ECCCc
Confidence 99754
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.15 E-value=0.022 Score=51.13 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=58.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC----CEEEEECCCCCCCCcccccCceecCCHHHHhcc--CCEEEEccCCChhhHhhc
Q 006758 163 LVLGIVGRSASARALATRSLSFK----MSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAA--SDVISLHCAVTDETIQII 236 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG----m~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~--ADVV~l~lPlT~~T~~lI 236 (632)
.+|||||+|.||+..++.++... ..|...+.... . .........++++++.. .|+|++++|.... .-+
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H--~~~ 81 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE--L--GSLDEVRQISLEDALRSQEIDVAYICSESSSH--EDY 81 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC--C--CEETTEEBCCHHHHHHCSSEEEEEECSCGGGH--HHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHH--H--HHhhccCcCCHHHHHhCCCcchhhhccccccc--ccc
Confidence 47999999999999888877532 34443332221 1 11122234589999874 5889999985332 222
Q ss_pred cHHHHhccCCCcEEEEcC-CChhhcHHHHHHHHHcCCc
Q 006758 237 NAECLQHIKPGAFLVNTG-SSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvg-RG~iVDe~AL~~AL~sg~I 273 (632)
-...++.=| .+++.-= --.+-+..+|.++.++..+
T Consensus 82 ~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~ 117 (172)
T d1lc0a1 82 IRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGR 117 (172)
T ss_dssp HHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred cccccccch--hhhcCCCccccHHHHHHHHHHHHHcCC
Confidence 233444322 3666531 1235556667776555444
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.036 Score=49.50 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=32.0
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.+|.|+|. |.||....+.++.+|++|++.+++.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~ 63 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE 63 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccc
Confidence 6889999995 9999999999999999999998765
|
| >d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Trefoil superfamily: Actin-crosslinking proteins family: Fascin domain: Fascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.039 Score=47.68 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=60.7
Q ss_pred cccccceEEEEEEecCCceEEeeecccccceEEeecccccCCCccceEEEeecCccccccccccCCceeeecccceEEEe
Q 006758 501 ETLKDGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKDTIGLRSFTAGGKLLQINRRMEFVFA 580 (632)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (632)
+.-.++.+++|+. ..|-|++-.. +|. ++.+.+..+|-.+|.+..+.+++.||+ ..||.|++...=-+.-.
T Consensus 38 e~~~~~~~~~Lr~--~~gkyl~~~~--~g~----v~a~~~~~~~~e~F~~~~~~g~~alra--~nG~yl~a~~~G~l~a~ 107 (123)
T d1dfca3 38 EIDRDTKKCAFRT--HTGKYWTLTA--TGG----VQSTASSKNASCYFDIEWRDRRITLRA--SNGKFVTSKKNGQLAAS 107 (123)
T ss_dssp EECTTTCCEEEEE--TTTEEEEECT--TSB----EEEEESSCCGGGCBEEEEETTEEEEEC--TTSSBCEECSSSBEESC
T ss_pred EECCCCCEEEEEe--CCCCEEEEcC--CCc----EEEccccCCCceEEEEEEeCCeEEEEe--CCCCEEEeCCCCEEEEc
Confidence 3334666788886 6788886531 232 666778889999999933469999999 47999999766444445
Q ss_pred eccccccccceec
Q 006758 581 SHSFDAWESWAIE 593 (632)
Q Consensus 581 ~~~~~~~~~~~~~ 593 (632)
+.+.+-||-|.++
T Consensus 108 ~~~~g~~e~f~i~ 120 (123)
T d1dfca3 108 VETAGDSELFLMK 120 (123)
T ss_dssp CSSCCSSSEEEEE
T ss_pred cCCCCCceEEEEE
Confidence 5778999999986
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.036 Score=48.56 Aligned_cols=86 Identities=9% Similarity=-0.040 Sum_probs=53.4
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCC----cccccCce-------ecCCHHH-HhccCCEEEEccCCChh
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGK----VTFPSAAR-------RMDTLND-LLAASDVISLHCAVTDE 231 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~----~~~~~g~~-------~~~sL~e-LL~~ADVV~l~lPlT~~ 231 (632)
++-|+|+|.+|+.+++.|...|.+|++++..+.... .....+.. ....|++ -+.+||.|+++++....
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~ 84 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD 84 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence 588999999999999999999999999987653211 11111211 1112322 25678999988876433
Q ss_pred hHhhccHHHHhccCCCcEEE
Q 006758 232 TIQIINAECLQHIKPGAFLV 251 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLI 251 (632)
.++-......+.|...+|
T Consensus 85 --n~~~~~~~r~~~~~~~ii 102 (153)
T d1id1a_ 85 --NAFVVLSAKDMSSDVKTV 102 (153)
T ss_dssp --HHHHHHHHHHHTSSSCEE
T ss_pred --HHHHHHHHHHhCCCCceE
Confidence 333344555555554333
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.66 E-value=0.052 Score=49.14 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=35.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK 199 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~ 199 (632)
.|.+|.|+|.|.+|...+..++.+|+ +|++.|++....+
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~ 68 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE 68 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHH
Confidence 68999999999999999999999995 8999999875543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=93.59 E-value=0.023 Score=52.00 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=25.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEEC
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYFD 192 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~d 192 (632)
++|||-|||+||+.+.+.+... .++|+..+
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaIn 32 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVS 32 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEe
Confidence 4799999999999999988765 47777665
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=93.57 E-value=0.042 Score=49.08 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=48.9
Q ss_pred cCcEEEEEeC---ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEc
Q 006758 161 RGLVLGIVGR---SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 161 ~GktVGIIGl---G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.|.+|+|||= ++++.+++..+..||++|.+..|..-... ........++++.++.+|+|.+.
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~ 66 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLL 66 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeee
Confidence 5899999996 68999999999999999999988642221 12234456899999999998764
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.44 E-value=0.038 Score=49.83 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=32.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
||+|.|||.|.-|-..|..|+..|++|++++....
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~ 35 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK 35 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 68999999999999999999999999999997653
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.035 Score=53.23 Aligned_cols=108 Identities=14% Similarity=0.149 Sum_probs=67.4
Q ss_pred ccccccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh--hh
Q 006758 156 GMRRCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ET 232 (632)
Q Consensus 156 ~~~~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~--~T 232 (632)
+|.+|+||++.|.|.+ .||.++|+.|...|++|++++++....+. ....+.+.-....++.+.|=++. +.
T Consensus 4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~-------~~~~l~~~~~~~~~~~~~~Dls~~~~v 76 (257)
T d1xg5a_ 4 GMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEE-------LAAECKSAGYPGTLIPYRCDLSNEEDI 76 (257)
T ss_dssp TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------HHHHHHHTTCSSEEEEEECCTTCHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHhcCCCceEEEEEccCCCHHHH
Confidence 4677999999999975 69999999999999999999987532210 01122222223567777776665 35
Q ss_pred HhhccHHHHhccCCCcEEEEcCCCh----h--hcHHHHHHHHHcC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGSSQ----L--LDDCAVKQLLIDG 271 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgRG~----i--VDe~AL~~AL~sg 271 (632)
..+++ ...+.+..=-+|||.+-.. + ++.+.+.+.++..
T Consensus 77 ~~~v~-~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~n 120 (257)
T d1xg5a_ 77 LSMFS-AIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVN 120 (257)
T ss_dssp HHHHH-HHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHH
T ss_pred HHHHH-HHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhh
Confidence 55664 3444444334677776432 2 4455555554443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.41 E-value=0.038 Score=53.07 Aligned_cols=103 Identities=10% Similarity=0.091 Sum_probs=61.7
Q ss_pred cccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh--hHhh
Q 006758 159 RCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE--TIQI 235 (632)
Q Consensus 159 ~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~--T~~l 235 (632)
+|+||++.|.| .+.||+++|+.|...|++|++.+++....+.. ...+.+.- ..+..+.|-++.. ...+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~-------~~~~~~~~--~~~~~~~~D~s~~~~~~~~ 73 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC-------LEIWREKG--LNVEGSVCDLLSRTERDKL 73 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHHHTT--CCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHhcC--CCceEEEeecCCHHHHHHH
Confidence 58999999999 56699999999999999999999875322100 01122211 3344445555543 4444
Q ss_pred ccHHHHhcc-CCCcEEEEcCCChh------hcHHHHHHHHHcC
Q 006758 236 INAECLQHI-KPGAFLVNTGSSQL------LDDCAVKQLLIDG 271 (632)
Q Consensus 236 I~~~~L~~M-K~GAvLINvgRG~i------VDe~AL~~AL~sg 271 (632)
+. +..+.. .+-.++||.+-... ++++...+.++..
T Consensus 74 ~~-~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n 115 (258)
T d1ae1a_ 74 MQ-TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTN 115 (258)
T ss_dssp HH-HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHH
T ss_pred HH-HHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhc
Confidence 43 334444 34567888664322 2555555444443
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.23 E-value=0.034 Score=50.84 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=25.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhC-CCEEEEEC
Q 006758 163 LVLGIVGRSASARALATRSLSF-KMSVLYFD 192 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~Lkaf-Gm~V~~~d 192 (632)
.+|||.|||+||+.+++.+... .++|+.++
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence 4799999999999999988754 57777665
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.23 E-value=0.045 Score=46.70 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=31.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+++.|||.|.||..+|..+..+|++|.++.+...
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence 6899999999999999999999999999998764
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.21 E-value=0.047 Score=46.41 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=32.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.++|.|||.|.||..+|..|..+|.+|.++.+...
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 47899999999999999999999999999998754
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.025 Score=54.07 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=55.5
Q ss_pred ccccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh--hHh
Q 006758 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE--TIQ 234 (632)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~--T~~ 234 (632)
..|.||++.|.|.+. ||+++|+.+...|++|++++++....+. . ...+.+. ...++...|=+++. ...
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~-~------~~~~~~~--~~~~~~~~~Dvs~~~~v~~ 73 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEE-T------AAKCKGL--GAKVHTFVVDCSNREDIYS 73 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-H------HHHHHHT--TCCEEEEECCTTCHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-H------HHHHHhc--CCcEEEEEeeCCCHHHHHH
Confidence 358999999999887 9999999999999999999997643210 0 0112221 23455555555443 344
Q ss_pred hccHHHHhccCCCcEEEEcCC
Q 006758 235 IINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgR 255 (632)
+++ ...+.+.+=-++||.+-
T Consensus 74 ~~~-~i~~~~g~idilinnag 93 (244)
T d1yb1a_ 74 SAK-KVKAEIGDVSILVNNAG 93 (244)
T ss_dssp HHH-HHHHHTCCCSEEEECCC
T ss_pred HHH-HHHHHcCCCceeEeecc
Confidence 443 33444544456666654
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=93.13 E-value=0.25 Score=43.90 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=51.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC----CCEEEEECCCCCCCCc-ccccC--ceecCCHHHHhccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVG-RSASARALATRSLSF----KMSVLYFDVPEGKGKV-TFPSA--ARRMDTLNDLLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf----Gm~V~~~dr~~~~~~~-~~~~g--~~~~~sL~eLL~~ADVV~l~lPlT~~T~~ 234 (632)
++||||| .|-.|+.+.++|... ..++..+..+....+. .+... ......-.+.+.++|+|++|+|... +..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~-s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY-TEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH-HHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchH-HHH
Confidence 4799998 599999999877542 3577766544332221 11111 1111122355789999999999522 222
Q ss_pred hccHHHHhccCCCcEEEEcCCC
Q 006758 235 IINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvgRG 256 (632)
+. ..+..-..++++|+.+.-
T Consensus 80 ~~--~~l~~~g~~~~VIDlSsd 99 (147)
T d1mb4a1 80 VY--PALRQAGWKGYWIDAAST 99 (147)
T ss_dssp HH--HHHHHTTCCSEEEESSST
T ss_pred Hh--HHHHHcCCceEEEeCCcc
Confidence 22 222223344677777653
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.11 E-value=0.036 Score=45.99 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=45.1
Q ss_pred cCcEEEEEeCChhh-HHHHHHHhhCCCEEEEECCCCCCCC-cccccCcee-cCCHHHHhccCCEEEEccCCChh
Q 006758 161 RGLVLGIVGRSASA-RALATRSLSFKMSVLYFDVPEGKGK-VTFPSAARR-MDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 161 ~GktVGIIGlG~IG-~~vA~~LkafGm~V~~~dr~~~~~~-~~~~~g~~~-~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
+.++|-|||.|.+| .++|+.|+..|+.|.++|....... .....++.. ...-.+.+...|+|+..-...++
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~~ 80 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDD 80 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCCC
Confidence 57889999999999 5569999999999999997643211 111222221 12223345667777665444333
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.08 E-value=0.039 Score=52.42 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=56.2
Q ss_pred ccCcEEEEEeC-C--hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhc
Q 006758 160 CRGLVLGIVGR-S--ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQII 236 (632)
Q Consensus 160 L~GktVGIIGl-G--~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI 236 (632)
|+||++.|.|. | .||.++|+.|...|++|++.+++....+ ....+.+....+.++..-+....+...++
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~--------~~~~l~~~~~~~~~~~~d~~~~~~~~~~~ 74 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEK--------RVRPIAQELNSPYVYELDVSKEEHFKSLY 74 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHH--------HHHHHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH--------HHHHHHhhCCceeEeeecccchhhHHHHH
Confidence 79999999996 4 4999999999999999999998743211 12234444556666655555544555555
Q ss_pred cHHHHhccCCCcEEEEcC
Q 006758 237 NAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvg 254 (632)
+ +..+.+.+=-++||.+
T Consensus 75 ~-~~~~~~g~id~lV~na 91 (274)
T d2pd4a1 75 N-SVKKDLGSLDFIVHSV 91 (274)
T ss_dssp H-HHHHHTSCEEEEEECC
T ss_pred H-HHHHHcCCCCeEEeec
Confidence 3 3344454444555443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.04 E-value=0.016 Score=51.95 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=55.0
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee-c----CCHHHHhc-----cCCEEEEccCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR-M----DTLNDLLA-----ASDVISLHCAVT 229 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~-~----~sL~eLL~-----~ADVV~l~lPlT 229 (632)
.|.+|.|+|.|.+|...++.++.+|+ .|++.+++....+.....++.. . +..++.++ ..|+|+.++...
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~ 111 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ 111 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence 58899999999999999999999886 7777888754322111111111 1 11222222 257777776642
Q ss_pred hhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 230 DETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 230 ~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
. + + ...+..++++..++.+|-
T Consensus 112 ~-~---~-~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 112 A-T---V-DYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp H-H---H-HHGGGGEEEEEEEEECCC
T ss_pred h-H---H-HHHHHHHhCCCEEEEEeC
Confidence 2 1 1 344566777777777653
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.02 E-value=0.047 Score=45.83 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=32.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+++.|||.|.||..+|..+..+|.+|.++.+...
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 37899999999999999999999999999987764
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=93.00 E-value=0.26 Score=45.03 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=65.0
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc---cc----cCceecCCHHHHhccCCEEEEccCCChhhH
Q 006758 163 LVLGIVGR-SASARALATRSLSF-KMSVLYFDVPEGKGKVT---FP----SAARRMDTLNDLLAASDVISLHCAVTDETI 233 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~---~~----~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~ 233 (632)
.+|||||. |-.|+.+.+.|..+ .++|.++..+...++.. .+ .......+.+++..++|+|++++|.... .
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~ 80 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-Y 80 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-H
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-H
Confidence 36999995 89999999999875 56777775444333311 11 1112234667788899999999997443 2
Q ss_pred hhccHHHHhccCCCcEEEEcCCChhhcHHHHHHH
Q 006758 234 QIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQL 267 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~A 267 (632)
.+ .... .+..+|+.+..--.+....++.
T Consensus 81 ~~-----~~~~-~~~~VIDlSadfRl~~~~~y~~ 108 (176)
T d1vkna1 81 DL-----VREL-KGVKIIDLGADFRFDDPGVYRE 108 (176)
T ss_dssp HH-----HTTC-CSCEEEESSSTTTCSSHHHHHH
T ss_pred HH-----HHhh-ccceEEecCccccccchhhHHH
Confidence 22 2333 5889999998777766665554
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.93 E-value=0.026 Score=53.63 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=55.0
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh--hhHhh
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ETIQI 235 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~--~T~~l 235 (632)
.|.||++.|.|.+. ||+++|+.|...|++|++.+++....+ ...+++ ..+++.+.+=++. +...+
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~--~~~~~~~~~Dls~~~~i~~~ 69 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA----------EAVAAL--EAEAIAVVADVSDPKAVEAV 69 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----------HHHHTC--CSSEEEEECCTTSHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----------HHHHHc--CCceEEEEecCCCHHHHHHH
Confidence 48999999999877 999999999999999999998753221 011111 2355555555443 34455
Q ss_pred ccHHHHhccCCCcEEEEcC
Q 006758 236 INAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvg 254 (632)
+. ...+.+.+=-+|||.+
T Consensus 70 ~~-~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 70 FA-EALEEFGRLHGVAHFA 87 (241)
T ss_dssp HH-HHHHHHSCCCEEEEGG
T ss_pred HH-HHHHHhCCccEecccc
Confidence 53 3444455556777765
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=92.74 E-value=0.093 Score=51.73 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=56.5
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCC-----------ccc-------ccCceecCCHHHHhccC--CE
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGK-----------VTF-------PSAARRMDTLNDLLAAS--DV 221 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~-----------~~~-------~~g~~~~~sL~eLL~~A--DV 221 (632)
|+|.|.| .|-||+.+++.|...|.+|+++|+...... ... .........+.+++... |+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 4566888 899999999999999999999998532100 000 00112233455667655 77
Q ss_pred EEEccCCCh-----------------hhHhhccHHHHhccCCCcEEEEcCCChh
Q 006758 222 ISLHCAVTD-----------------ETIQIINAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 222 V~l~lPlT~-----------------~T~~lI~~~~L~~MK~GAvLINvgRG~i 258 (632)
|+-+.-... .|.+++....-..+++...||.+|+..+
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~v 135 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSEL 135 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGG
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhh
Confidence 776643311 1444444433344566667888887554
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=92.74 E-value=0.046 Score=44.93 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=44.2
Q ss_pred cEEEEEeCChhhH-HHHHHHhhCCCEEEEECCCCCCCCc-ccccCcee-cCCHHHHhccCCEEEEccCCChh
Q 006758 163 LVLGIVGRSASAR-ALATRSLSFKMSVLYFDVPEGKGKV-TFPSAARR-MDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 163 ktVGIIGlG~IG~-~vA~~LkafGm~V~~~dr~~~~~~~-~~~~g~~~-~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
++|=|||.|.+|. ++|+.|+..|+.|.++|........ ....|+.. ...-.+.+..+|+|+..-...++
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~~ 73 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDD 73 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCcCCC
Confidence 5788999999998 7899999999999999987532211 11123221 11122334667877765444333
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.043 Score=52.51 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=34.5
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE 40 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999996 6799999999999999999999874
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.045 Score=52.46 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=34.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
-|+||++.|.|.+. ||+++|+.|...|++|++.+|+..
T Consensus 11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~ 49 (269)
T d1xu9a_ 11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE 49 (269)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 38999999999876 999999999999999999999753
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=92.57 E-value=0.035 Score=53.34 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=34.4
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+|+||++.|.|.+. ||+++|+.|...|++|++.+++..
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~ 40 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE 40 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 58999999999874 999999999999999999998753
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=92.50 E-value=0.091 Score=50.06 Aligned_cols=85 Identities=9% Similarity=0.082 Sum_probs=55.2
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCChh--hH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTDE--TI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~~--T~ 233 (632)
+|+||++.|.|.+. ||+++|+.|...|++|++.+++...... ..+++.+ ..+++.+.+=++.. ..
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~----------~~~~~~~~~g~~~~~~~~Dv~~~~~v~ 75 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVE----------VTEKVGKEFGVKTKAYQCDVSNTDIVT 75 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHH----------HHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH----------HHHHHHHHhCCceEEEEccCCCHHHHH
Confidence 58999999999876 9999999999999999999998644321 1122221 24566666655543 44
Q ss_pred hhccHHHHhccCCCcEEEEcC
Q 006758 234 QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvg 254 (632)
.++. +..+...+=-+|||.+
T Consensus 76 ~~~~-~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 76 KTIQ-QIDADLGPISGLIANA 95 (260)
T ss_dssp HHHH-HHHHHSCSEEEEEECC
T ss_pred HHHH-HHHHHhCCCcEecccc
Confidence 4443 2333443334667765
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.07 Score=44.95 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=31.7
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
++|.|||-|.+|..+|..++.+|.+|.++++...
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence 6799999999999999999999999999998764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.30 E-value=0.064 Score=51.15 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=55.2
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCCh--hhH
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVTD--ETI 233 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT~--~T~ 233 (632)
+|+||++.|.|.+. ||+++|+.|...|++|++.+++..... ...+++.. ..+++.+.+-++. +..
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~----------~~~~~l~~~~g~~~~~~~~Dv~~~~~v~ 71 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS----------EAAQKLTEKYGVETMAFRCDVSNYEEVK 71 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----------HHHHHHHHHHCCCEEEEECCTTCHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----------HHHHHHHHHhCCcEEEEEccCCCHHHHH
Confidence 58999999999865 999999999999999999998753221 11222222 2466666666654 345
Q ss_pred hhccHHHHhccCCCcEEEEcC
Q 006758 234 QIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 234 ~lI~~~~L~~MK~GAvLINvg 254 (632)
.++. +..+.+.+=-+|||.+
T Consensus 72 ~~~~-~~~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 72 KLLE-AVKEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHH-HHHHHHSCCCEEEECC
T ss_pred HHHH-HHHHHcCCCCEEEECC
Confidence 5553 3334443334666654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.28 E-value=0.07 Score=50.08 Aligned_cols=36 Identities=17% Similarity=0.013 Sum_probs=31.8
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.||+|.|.|. |.||+++|+.|...|++|...|+...
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~ 37 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN 37 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4899999998 55999999999999999999987654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=0.073 Score=45.39 Aligned_cols=34 Identities=15% Similarity=-0.087 Sum_probs=31.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+++.|||.|.||..+|..++.+|.+|.++.+...
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 6899999999999999999999999999998753
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.27 E-value=0.043 Score=48.63 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=32.5
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
.+++|.|||-|.+|...|..|+..|+ .|.++++...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 57899999999999999999999999 4999997754
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.075 Score=55.09 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=59.4
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCCC---c--cccc---C-------------------ce-e-
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKGK---V--TFPS---A-------------------AR-R- 208 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~~---~--~~~~---g-------------------~~-~- 208 (632)
.|++.+|.|||+|.+|..+|+.|...|. ++.++|...-... . .+.. | +. .
T Consensus 34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 4788999999999999999999998888 7999997542111 0 0000 0 00 0
Q ss_pred ---cCCHHHHhccCCEEEEccCCChhhHhhccHHHHhccC
Q 006758 209 ---MDTLNDLLAASDVISLHCAVTDETIQIINAECLQHIK 245 (632)
Q Consensus 209 ---~~sL~eLL~~ADVV~l~lPlT~~T~~lI~~~~L~~MK 245 (632)
.+..++++.+.|+|+.++- +.+++.+++...+...|
T Consensus 114 ~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k 152 (426)
T d1yovb1 114 NKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN 152 (426)
T ss_dssp SCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred ccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence 1123567888999988776 46778888887766544
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.16 Score=45.04 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=47.3
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCCC-EEEEECCCCCCCCc-------ccccCceecCCHHHHhccCCEEEEcc
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFKM-SVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafGm-~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~ADVV~l~l 226 (632)
+.|.+|++||= |++..+++..+..||+ .++++.|....... ..........++++.+.++|||....
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~ 79 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR 79 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeec
Confidence 68999999996 6699999999999964 56666665322210 11112334678999999999998653
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.18 E-value=0.07 Score=45.21 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=31.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+++.|||-|.||..+|..++.+|++|.++.+...
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence 37899999999999999999999999999987653
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.13 E-value=0.11 Score=46.65 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=33.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG 198 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~ 198 (632)
.|.+|.|+|.|.+|...++.++++|+ +|++.|++....
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl 65 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF 65 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH
Confidence 68999999999999999999999996 799999876443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.10 E-value=0.13 Score=45.80 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=33.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG 198 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~ 198 (632)
.|.+|.|+|.|.+|...+..++.+|+ +|++.+++....
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~ 66 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 66 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH
Confidence 68999999999999999999999985 899999887544
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=92.09 E-value=0.064 Score=51.37 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=55.8
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh--hhHhh
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ETIQI 235 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~--~T~~l 235 (632)
+|.||++.|.|.+. ||+++|+.|...|++|++.+++....+. ....+.+......++.+.|=++. +...+
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~-------~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~ 73 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA-------SKAAVLETAPDAEVLTTVADVSDEAQVEAY 73 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------HHHHHHHHCTTCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHhhCCCCeEEEEeccCCCHHHHHHH
Confidence 37899999999764 9999999999999999999987533210 01122333344566666665554 35555
Q ss_pred ccHHHHhccCCCcEEEEcC
Q 006758 236 INAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvg 254 (632)
++ +..+.+.+=-+|||.+
T Consensus 74 ~~-~~~~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 74 VT-ATTERFGRIDGFFNNA 91 (258)
T ss_dssp HH-HHHHHHSCCSEEEECC
T ss_pred HH-HHHHHhCCCCEEEECC
Confidence 53 2333343333666643
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=92.06 E-value=0.47 Score=44.96 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=78.9
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC---CC-Ccccc----------cCceecCCHHHHhccCCEEE
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG---KG-KVTFP----------SAARRMDTLNDLLAASDVIS 223 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~---~~-~~~~~----------~g~~~~~sL~eLL~~ADVV~ 223 (632)
.|++.+|.|+|.|.-|..+|+.+...+. +++.+|+..- .. ..... .......++.+++..+++++
T Consensus 23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~ 102 (222)
T d1vl6a1 23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 102 (222)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred ChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceec
Confidence 4789999999999999999999987776 7999998721 10 00000 01122457889999999877
Q ss_pred EccCCChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHHHHHcCCc
Q 006758 224 LHCAVTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQLLIDGTL 273 (632)
Q Consensus 224 l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~AL~sg~I 273 (632)
..- +.+++.++.+..|.+..+|.=.+.-..--+++ .+-..|+.
T Consensus 103 g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~a~~~G~a 145 (222)
T d1vl6a1 103 GVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--LAREAGAF 145 (222)
T ss_dssp ECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--HHHHTTCS
T ss_pred ccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--hheeccce
Confidence 664 46889999999999999999999876655554 33445554
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.04 E-value=0.081 Score=47.01 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=58.4
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCC---CEEEEECCCCCCCCcc--cccCceecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 162 GLVLGIVGR-SASARALATRSLSFK---MSVLYFDVPEGKGKVT--FPSAARRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafG---m~V~~~dr~~~~~~~~--~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
|-+|||||. |-+|+.+.+.|.... .++.++......+... ...........++.+.+.|++++++|... +..+
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~~~ 79 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKY 79 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hhhH
Confidence 557999998 999999999997653 4666665443333311 11111223345667788999999998422 2222
Q ss_pred ccHHHHhccCCCcEEEEcCCChh
Q 006758 236 INAECLQHIKPGAFLVNTGSSQL 258 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~i 258 (632)
....++.|..+|+.+.---
T Consensus 80 ----~~~~~~~~~~VIDlSsdfR 98 (154)
T d2gz1a1 80 ----APYAVKAGVVVVDNTSYFR 98 (154)
T ss_dssp ----HHHHHHTTCEEEECSSTTT
T ss_pred ----HhhhccccceehhcChhhh
Confidence 2234567999999886443
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.02 E-value=0.089 Score=43.97 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=33.8
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
..+++|.|||-|.||..+|..|+.+|.+|..+.+...
T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 3589999999999999999999999999999998753
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.91 E-value=0.037 Score=53.05 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=33.9
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|+||++.|.|-+. ||+++|+.|...|++|++.+++.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR 39 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999855 99999999999999999999875
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=91.85 E-value=0.095 Score=50.37 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=35.8
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+|+||++.|.| .|.||+++|+.|...|++|++.+++..
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~ 60 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD 60 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 579999999998 688999999999999999999998753
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.79 E-value=0.054 Score=46.29 Aligned_cols=32 Identities=19% Similarity=-0.050 Sum_probs=29.8
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
+++.|||.|.||..+|..++.+|.+|.++.+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 57999999999999999999999999999764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.78 E-value=0.053 Score=51.74 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=33.6
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|+||++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~ 40 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD 40 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4899999999984 599999999999999999999875
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.77 E-value=0.048 Score=52.26 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=34.4
Q ss_pred ccccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.+|.||++.|.|.+. ||+++|+.|...|++|++.+++.
T Consensus 4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 42 (259)
T d2ae2a_ 4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ 42 (259)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 358999999999875 99999999999999999999865
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.3 Score=44.21 Aligned_cols=96 Identities=8% Similarity=0.009 Sum_probs=65.2
Q ss_pred cccCcEEEEEeCC--hhhHHHHHHHhhCCCEEEEECCCCCCCCc-----------ccccCceecCCHHHHhccCCEEEEc
Q 006758 159 RCRGLVLGIVGRS--ASARALATRSLSFKMSVLYFDVPEGKGKV-----------TFPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 159 ~L~GktVGIIGlG--~IG~~vA~~LkafGm~V~~~dr~~~~~~~-----------~~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
.+.|.+|++||=| ++..+++..+..|||+|.++.|..-.... ..........++++.+..+|+|...
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 81 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD 81 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence 4789999999955 78999999999999999999986422110 0011223467899999999999774
Q ss_pred cCCC----hh----------hHhhccHHHHhccCCCcEEEEcC
Q 006758 226 CAVT----DE----------TIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 226 lPlT----~~----------T~~lI~~~~L~~MK~GAvLINvg 254 (632)
.=.. .+ ....++...+...+++++|..+.
T Consensus 82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L 124 (183)
T d1duvg2 82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 124 (183)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence 4321 10 11223444555678888888875
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.67 E-value=0.093 Score=46.27 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=54.5
Q ss_pred cEEEEEeC-ChhhHHHHHHHh--hC-CCEEEEECCCCCCCCcccccCc---eecCCHHHHhccCCEEEEccCCChhhHhh
Q 006758 163 LVLGIVGR-SASARALATRSL--SF-KMSVLYFDVPEGKGKVTFPSAA---RRMDTLNDLLAASDVISLHCAVTDETIQI 235 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~Lk--af-Gm~V~~~dr~~~~~~~~~~~g~---~~~~sL~eLL~~ADVV~l~lPlT~~T~~l 235 (632)
.+|||||. |-+|+.+.+.|. .| ..++..+..+...++. ..... .......+.+..+|++++++|... +..+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~-i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~ 80 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR-MGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAH 80 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE-EEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc-eeeccccchhccchhhhhccceEEEecCCcch-hhhh
Confidence 46999987 999999999996 33 4567666544444431 11111 111122356788999999998522 2222
Q ss_pred ccHHHHhccCCCcEEEEcCCCh
Q 006758 236 INAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvgRG~ 257 (632)
. . ...+.|.++|+.+.--
T Consensus 81 ~-~---~~~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 81 A-E---RARAAGCSVIDLSGAL 98 (144)
T ss_dssp H-H---HHHHTTCEEEETTCTT
T ss_pred c-c---ccccCCceEEeechhh
Confidence 2 1 2245789999987643
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.60 E-value=0.098 Score=50.05 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=33.5
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|.||++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD 40 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999965 599999999999999999999875
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.59 E-value=0.08 Score=45.44 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=31.4
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFK--MSVLYFDVPE 195 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~ 195 (632)
.||+|.|||-|.+|..+|..|+.+| .+|+++++..
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4899999999999999999999766 6899998775
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.54 E-value=0.059 Score=45.97 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=32.8
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.+++.|||.|.||..+|..+..+|++|.++.+...-
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 478999999999999999999999999999987643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=91.52 E-value=0.056 Score=51.32 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=32.9
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|+||++.|.|.+ .||+++|+.|...|++|++++++.
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~ 38 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE 38 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3789999999855 599999999999999999999875
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.52 E-value=0.038 Score=47.18 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=51.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCcee----cCC---HHH-HhccCCEEEEccCCChhhHh
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARR----MDT---LND-LLAASDVISLHCAVTDETIQ 234 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~----~~s---L~e-LL~~ADVV~l~lPlT~~T~~ 234 (632)
|.+-|+|+|.+|+.+++.|++.+ |.+.+..+.........+... ..+ |.+ -+.+|+.|+++.+.... +
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~--n 76 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSE--T 76 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHH--H
T ss_pred CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhh--h
Confidence 46889999999999999998765 455565543222111112111 112 222 26778999998876444 3
Q ss_pred hccHHHHhccCCCc-EEEEc
Q 006758 235 IINAECLQHIKPGA-FLVNT 253 (632)
Q Consensus 235 lI~~~~L~~MK~GA-vLINv 253 (632)
++-...++.+.|.. +++-+
T Consensus 77 ~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 77 IHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHHHHCSSSCEEEEC
T ss_pred HHHHHHHHHHCCCceEEEEE
Confidence 44445566666664 44443
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=91.51 E-value=0.17 Score=45.60 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=62.0
Q ss_pred cEEEEEe-CChhhHHHHHHHhhC-CCEEEEECC---CCCCCCcc----------cccCceecCCHHHHhccCCEEEEccC
Q 006758 163 LVLGIVG-RSASARALATRSLSF-KMSVLYFDV---PEGKGKVT----------FPSAARRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr---~~~~~~~~----------~~~g~~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+|+||| .|-.|+.+.+.|... .++|..... ....++.. .................+|+|++++|
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 4799999 899999999999987 777765532 11122200 00011123345566788999999999
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcCCChhhcHHHHHH
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTGSSQLLDDCAVKQ 266 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~AL~~ 266 (632)
..... +-.-...+.|..+|+.+..--.+......
T Consensus 82 ~~~s~-----~~~~~~~~~~~~vIDlSadfRl~~~~~~~ 115 (179)
T d2g17a1 82 HEVSH-----DLAPQFLQAGCVVFDLSGAFRVNDRAFYE 115 (179)
T ss_dssp HHHHH-----HHHHHHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred chhHH-----HHhhhhhhcCceeeccccccccccccccc
Confidence 52221 11223345789999999776665555443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=91.42 E-value=0.14 Score=47.87 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=45.3
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcc--------cccC-------ceecCCHHHHhccCCEEEEcc
Q 006758 163 LVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVT--------FPSA-------ARRMDTLNDLLAASDVISLHC 226 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~--------~~~g-------~~~~~sL~eLL~~ADVV~l~l 226 (632)
++|.|+| .|.||+.+++.|...|.+|+++.|........ ...+ ......+...+..+++++.++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~ 83 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 83 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence 5699999 59999999999999999999999865332100 0001 111234556777778777776
Q ss_pred CCC
Q 006758 227 AVT 229 (632)
Q Consensus 227 PlT 229 (632)
+..
T Consensus 84 ~~~ 86 (312)
T d1qyda_ 84 AGG 86 (312)
T ss_dssp CCS
T ss_pred hhc
Confidence 643
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=91.35 E-value=0.15 Score=48.16 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=33.1
Q ss_pred ccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|+||++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 799999999975 599999999999999999999875
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=91.29 E-value=0.37 Score=43.69 Aligned_cols=96 Identities=9% Similarity=0.144 Sum_probs=57.1
Q ss_pred CcEEEEEe-CChhhHHHHHHHhhC-CCEEEEECCCCCCCCcc---cc----cC-ceecCCHHHHhccCCEEEEccCCChh
Q 006758 162 GLVLGIVG-RSASARALATRSLSF-KMSVLYFDVPEGKGKVT---FP----SA-ARRMDTLNDLLAASDVISLHCAVTDE 231 (632)
Q Consensus 162 GktVGIIG-lG~IG~~vA~~Lkaf-Gm~V~~~dr~~~~~~~~---~~----~g-~~~~~sL~eLL~~ADVV~l~lPlT~~ 231 (632)
..+||||| .|-.|+.+.++|... .+++.+.......+... ++ .. .......++.+..+|+|++++|-...
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s 84 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT 84 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence 45699999 599999999999975 56776664333333210 00 00 11122345667899999999996333
Q ss_pred hHhhccHHHHhccCCCcEEEEcCCChhhcHHH
Q 006758 232 TIQIINAECLQHIKPGAFLVNTGSSQLLDDCA 263 (632)
Q Consensus 232 T~~lI~~~~L~~MK~GAvLINvgRG~iVDe~A 263 (632)
.+....+.....+|..+.+.-....+
T Consensus 85 ------~~~~~~l~~~~~~v~~~~~~~~~~~~ 110 (183)
T d2cvoa1 85 ------QEIIKGLPQELKIVDLSADFRLRDIN 110 (183)
T ss_dssp ------HHHHHTSCSSCEEEECSSTTTCSCHH
T ss_pred ------HHHHHHHHhcCcccccchhhhccccc
Confidence 33344455555556655554444333
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=91.14 E-value=0.088 Score=45.23 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=32.2
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+++.|||.|.||..+|..++.+|.+|.++.+...
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~ 60 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG 60 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence 47899999999999999999999999999998753
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.02 E-value=0.11 Score=49.19 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=33.5
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|.||++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 39 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4799999999975 599999999999999999999874
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.96 E-value=0.11 Score=49.13 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=33.6
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|+||++.|.|.+. ||+++|+.|...|++|++.+++.
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 48999999999765 99999999999999999999875
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.93 E-value=0.12 Score=43.86 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=33.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+++|.|||.|.+|..+|..|...|.+|.++++...
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence 578999999999999999999999999999987653
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=90.92 E-value=0.12 Score=43.94 Aligned_cols=36 Identities=19% Similarity=0.106 Sum_probs=33.2
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.++++.|||.|.+|-.+|..|+..|.+|.++++...
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 468999999999999999999999999999998764
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=90.90 E-value=0.1 Score=49.48 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=33.6
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|.||++.|.|-+ .||+++|+.|...|++|++.+++.
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~ 39 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP 39 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 4899999999985 599999999999999999999865
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.12 Score=50.58 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=57.7
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHh---ccCCEEEEccCCCh--hh
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLL---AASDVISLHCAVTD--ET 232 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL---~~ADVV~l~lPlT~--~T 232 (632)
.|+||++.|.|.+. ||+++|+.|...|++|++.+++....+.. ...|...+ ....++.+.+=++. +.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~-------~~el~~~~~~~~~~~~~~~~~Dvs~~~~v 81 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSA-------ADELQANLPPTKQARVIPIQCNIRNEEEV 81 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHHHTSCTTCCCCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHhhhccccCceEEEEeccCCCHHHH
Confidence 48999999999755 99999999999999999999875332100 11222211 23467777766654 35
Q ss_pred HhhccHHHHhccCCCcEEEEcCC
Q 006758 233 IQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 233 ~~lI~~~~L~~MK~GAvLINvgR 255 (632)
..++. ...+.+.+=-+|||.+-
T Consensus 82 ~~~~~-~~~~~~G~iDiLVnnAg 103 (297)
T d1yxma1 82 NNLVK-STLDTFGKINFLVNNGG 103 (297)
T ss_dssp HHHHH-HHHHHHSCCCEEEECCC
T ss_pred HHHHH-HHHHHhCCeEEEEeecc
Confidence 55554 33444544457777663
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=90.81 E-value=0.089 Score=49.69 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=33.2
Q ss_pred cccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|+||++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 5899999999975 499999999999999999888764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.75 E-value=0.067 Score=51.05 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=33.3
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINL 39 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 89999999998 6799999999999999999999874
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=90.75 E-value=0.13 Score=49.59 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=34.2
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.+||+|.|.| .|-||..+++.|...|.+|.++++....
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT 44 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 4799999999 7899999999999999999999987643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.72 E-value=0.034 Score=49.32 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=53.8
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCC-EEEEECCCCCCCCcccccCcee-----cCC-HHHHh-----ccCCEEEEccC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKM-SVLYFDVPEGKGKVTFPSAARR-----MDT-LNDLL-----AASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm-~V~~~dr~~~~~~~~~~~g~~~-----~~s-L~eLL-----~~ADVV~l~lP 227 (632)
.|.+|.|+|. |.||...+..++++|. +|++.+++....+.....|+.. ..+ .+++. ...|+|+-+..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g 106 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN 106 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence 6889999995 9999999999999885 8999998764332111112110 011 22222 12677777665
Q ss_pred CChhhHhhccHHHHhccCCCcEEEEcC
Q 006758 228 VTDETIQIINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 228 lT~~T~~lI~~~~L~~MK~GAvLINvg 254 (632)
. +.+ + ...+..++++..+|.+|
T Consensus 107 ~-~~~---~-~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 107 S-EKT---L-SVYPKALAKQGKYVMVG 128 (170)
T ss_dssp C-HHH---H-TTGGGGEEEEEEEEECC
T ss_pred c-chH---H-HhhhhhcccCCEEEEec
Confidence 3 222 1 23456677777777764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.63 E-value=0.2 Score=44.12 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK 197 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~ 197 (632)
.|.+|.|+|.|.+|...++.++.+|+ .|++.+++...
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k 65 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK 65 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence 68899999999999999999999996 67777776543
|
| >d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Trefoil superfamily: Actin-crosslinking proteins family: Fascin domain: Fascin species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.096 Score=45.76 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=58.5
Q ss_pred cceEEEEEEecCCceEEeeecccccceEEeecccccCCCccceEEEeecCc-cccccccccCCceeeecccceEEEeecc
Q 006758 505 DGYVVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKD-TIGLRSFTAGGKLLQINRRMEFVFASHS 583 (632)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (632)
+|-+|+|++ ..|.||+=. ++| +++-|.+...|..+|.++.+.| ++.|||. +.|+.|.++.-- ++-.+.+
T Consensus 49 ~~~~v~Lrs--~~Gkylsa~---~~g---~v~a~~~~~~~~E~F~~~~~~dG~~~l~s~-~nG~yl~~~~~~-l~a~~~~ 118 (133)
T d1dfca1 49 GSAAVCLRS--HLGRYLAAD---KDG---NVTCEREVPGPDCRFLIVAHDDGRWSLQSE-AHRRYFGGTEDR-LSCFAQT 118 (133)
T ss_dssp --CCBCCBC--TTSCEEEEC---TTS---CEEEEESSCCGGGCEECCBCSSSCBCCEET-TTCCEEEEETTE-EEEEESS
T ss_pred CCCEEEEEe--cCCCEEeec---cCc---ceEEcCCCCCCCcEEEEEECCCCEEEEEEc-CCCcEEEecCCc-eEEeCCC
Confidence 567888887 468898754 223 4667888899999999977766 8888875 478999987643 5556778
Q ss_pred cccccccee
Q 006758 584 FDAWESWAI 592 (632)
Q Consensus 584 ~~~~~~~~~ 592 (632)
-+-||.|++
T Consensus 119 ~~~~e~f~v 127 (133)
T d1dfca1 119 VSPAEKWSV 127 (133)
T ss_dssp CCGGGCBEE
T ss_pred CCCCeeEEE
Confidence 899999987
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=90.51 E-value=0.1 Score=49.19 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=43.9
Q ss_pred ccCcEEEEEeCChhhHHHH----HHHhhC--CCEEE-EECCCCCCCC---cccc-cCceecCCHHHHhcc--CCEEEEcc
Q 006758 160 CRGLVLGIVGRSASARALA----TRSLSF--KMSVL-YFDVPEGKGK---VTFP-SAARRMDTLNDLLAA--SDVISLHC 226 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA----~~Lkaf--Gm~V~-~~dr~~~~~~---~~~~-~g~~~~~sL~eLL~~--ADVV~l~l 226 (632)
-+-.+|||||+|.+|..++ ..++.+ +++|+ ++|++..... ..+. .....++++++++.. -|+|++++
T Consensus 14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t 93 (237)
T d2nvwa1 14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV 93 (237)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence 3456899999998654443 345443 67877 5787653222 1111 123456899999864 67899998
Q ss_pred CC
Q 006758 227 AV 228 (632)
Q Consensus 227 Pl 228 (632)
|.
T Consensus 94 p~ 95 (237)
T d2nvwa1 94 KV 95 (237)
T ss_dssp CH
T ss_pred CC
Confidence 84
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.51 E-value=0.1 Score=49.63 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=53.8
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCCh--hhHhh
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTD--ETIQI 235 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~--~T~~l 235 (632)
+|+||++.|.|. +.||+++|+.|...|++|++.+++....+ ...+++-....+..+.+=++. +...+
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~----------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 72 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGE----------KAAKSVGTPDQIQFFQHDSSDEDGWTKL 72 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----------HHHHHHCCTTTEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----------HHHHHhCCCCcEEEEEccCCCHHHHHHH
Confidence 489999999995 55999999999999999999998653221 011222223456666665554 34455
Q ss_pred ccHHHHhccCCCcEEEEcC
Q 006758 236 INAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvg 254 (632)
+. ...+.+.+=-+|||.+
T Consensus 73 ~~-~~~~~~G~iDiLVnnA 90 (251)
T d1zk4a1 73 FD-ATEKAFGPVSTLVNNA 90 (251)
T ss_dssp HH-HHHHHHSSCCEEEECC
T ss_pred HH-HHHHHhCCceEEEecc
Confidence 53 2333333333777766
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.40 E-value=0.5 Score=43.73 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=73.2
Q ss_pred HHHHHHHhhCCCEEEEECCCCCCC---Ccccc-cCceecCCHHHHhccCCEEEE-ccCCChhhHhhccHHHHhccCCCcE
Q 006758 175 RALATRSLSFKMSVLYFDVPEGKG---KVTFP-SAARRMDTLNDLLAASDVISL-HCAVTDETIQIINAECLQHIKPGAF 249 (632)
Q Consensus 175 ~~vA~~LkafGm~V~~~dr~~~~~---~~~~~-~g~~~~~sL~eLL~~ADVV~l-~lPlT~~T~~lI~~~~L~~MK~GAv 249 (632)
=..++.|...|++|++=.-..... +..|. .|+.-.++-++++.++|+|+. ..|+..+ .+.+.+..||+|++
T Consensus 20 P~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~ 95 (194)
T d1l7da2 20 PEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAV 95 (194)
T ss_dssp HHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCE
T ss_pred HHHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceE
Confidence 467788999999999854332111 12222 355556788999999998875 4565443 23467889999999
Q ss_pred EEEcCCChhhcHHHHHHHHHcCCcceEEeecCC
Q 006758 250 LVNTGSSQLLDDCAVKQLLIDGTLAGCALDGAE 282 (632)
Q Consensus 250 LINvgRG~iVDe~AL~~AL~sg~I~GAaLDVfE 282 (632)
+|..-- .....+++++|.+.++...++|...
T Consensus 96 li~~l~--p~~~~~~~~~l~~~~it~~a~e~ip 126 (194)
T d1l7da2 96 LMCHLG--ALTNRPVVEALTKRKITAYAMELMP 126 (194)
T ss_dssp EEEECC--GGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred EEEecc--cccchhHHHHHHhcCceEEeeeccc
Confidence 998753 5667889999999999988888763
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.34 E-value=0.097 Score=50.02 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=34.6
Q ss_pred ccccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..|+||++.|.| -+.||+++|+.|...|++|++.+++.
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~ 52 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS 52 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 569999999999 78899999999999999999988764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=90.30 E-value=0.19 Score=47.01 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=32.8
Q ss_pred ccCcEEEEEeCCh---hhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGRSA---SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGlG~---IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|+||++.|.|.+. ||+++|+.|...|++|++.+++.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 41 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence 7999999999764 99999999999999999999874
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=90.28 E-value=0.12 Score=44.90 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.6
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEE
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLY 190 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~ 190 (632)
++|||+|+ |+||+.+++.+..-|+++.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~ 29 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL 29 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence 47999996 99999999999988988664
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.28 E-value=0.062 Score=51.34 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=33.4
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|+||++.|.|.+ .||+++|+.|...|++|++.+++.
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~ 40 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE 40 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999965 599999999999999999999865
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.21 E-value=0.16 Score=42.82 Aligned_cols=34 Identities=15% Similarity=-0.061 Sum_probs=31.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++++.|||-|.+|-.+|..|..+|.+|.++++..
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence 4689999999999999999999999999999765
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=90.13 E-value=0.086 Score=50.82 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=33.8
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA 39 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 389999999997 6899999999999999999999874
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.98 E-value=0.13 Score=42.87 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=32.1
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+++.|||-|.+|..+|..++.+|++|.++++...
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 37899999999999999999999999999988753
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=89.80 E-value=0.068 Score=50.44 Aligned_cols=38 Identities=16% Similarity=0.075 Sum_probs=35.0
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~ 195 (632)
.+|++++|.|||+|.+|..+|..|...|. ++..+|...
T Consensus 26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 56999999999999999999999999999 899999764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=89.78 E-value=0.23 Score=45.71 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=31.7
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
-++|.|+|. |.||+.+++.|...|.+|++++|....
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 467999995 999999999999999999999987543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=89.74 E-value=0.14 Score=46.13 Aligned_cols=34 Identities=12% Similarity=-0.090 Sum_probs=31.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
-++|.|||.|.+|...|..|+..|.+|.++++..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4579999999999999999999999999999864
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.72 E-value=0.14 Score=49.08 Aligned_cols=38 Identities=18% Similarity=0.031 Sum_probs=33.8
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+|+||++.|.|.+ .||+++|+.|...|++|++.+++..
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~ 40 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE 40 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4899999999874 5999999999999999999998753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.68 E-value=0.096 Score=48.16 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=32.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGK 197 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~ 197 (632)
.|.+|.|+|.|.||...+..++.+|+ +|++.|++...
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~r 62 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 62 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchh
Confidence 68899999999999999999999988 88899987643
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=89.60 E-value=0.13 Score=47.47 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=32.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
..++|.|||.|..|-..|..|+..|++|.+++....
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~ 64 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 64 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 457999999999999999999999999999997653
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.48 E-value=0.068 Score=51.24 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=34.5
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|+||++.|.|.+. ||+++|+.|...|++|++++++..
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~ 43 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY 43 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 58999999999876 999999999999999999998753
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.47 E-value=0.34 Score=47.27 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=34.3
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+|.||++.|.|.+. ||+++|+.|...|++|++.|+...
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 48999999999875 999999999999999999998754
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.43 E-value=0.21 Score=43.00 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=33.8
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.+++|.|||-|.+|-.+|..|+..|.+|.++++....
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~ 70 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV 70 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence 4689999999999999999999999999999987643
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=89.35 E-value=0.19 Score=45.95 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=32.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
...+|.|||.|..|..+|..|+..|++|.++++...
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 467899999999999999999999999999998653
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=89.11 E-value=0.12 Score=46.58 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=53.5
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhC-CCEEEE-ECCCCCCCC--------cccccCceecCCHHHHhccCCEEEEccCCCh
Q 006758 162 GLVLGIVGR-SASARALATRSLSF-KMSVLY-FDVPEGKGK--------VTFPSAARRMDTLNDLLAASDVISLHCAVTD 230 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~Lkaf-Gm~V~~-~dr~~~~~~--------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~ 230 (632)
..+|+|+|+ |+||+.+++.+... ++++.+ +++...... .....+.....++++++..+|||+--..- +
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~p-~ 82 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRP-E 82 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCH-H
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEeccH-H
Confidence 357999995 99999999988764 787654 455432110 00112334456888899999999766431 2
Q ss_pred hhHhhccHHHHhccCCCcEEEEcCCCh
Q 006758 231 ETIQIINAECLQHIKPGAFLVNTGSSQ 257 (632)
Q Consensus 231 ~T~~lI~~~~L~~MK~GAvLINvgRG~ 257 (632)
.+...+. ...+.+.-+|=-..|-
T Consensus 83 ~~~~~~~----~a~~~~~~~ViGTTG~ 105 (162)
T d1diha1 83 GTLNHLA----FCRQHGKGMVIGTTGF 105 (162)
T ss_dssp HHHHHHH----HHHHTTCEEEECCCCC
T ss_pred HHHHHHH----HHHhccceeEEecCCC
Confidence 3333332 1123345555555563
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=88.82 E-value=0.21 Score=45.65 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=34.8
Q ss_pred cccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 159 RCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 159 ~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
...+++|+|||-|..|-..|..|+..|++|.+|++...
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 35789999999999999999999999999999998764
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.82 E-value=0.21 Score=41.26 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=31.9
Q ss_pred ccccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
...+||+|+|||.|+.|..+|.-|...+-+|++..++.
T Consensus 28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 46899999999999999999999998877766655543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.82 E-value=0.13 Score=45.61 Aligned_cols=67 Identities=7% Similarity=0.028 Sum_probs=43.6
Q ss_pred cEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCC------cccccCceecCCHHHHhccCCEEEEccCCC
Q 006758 163 LVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGK------VTFPSAARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~LkafGm--~V~~~dr~~~~~~------~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
+||.|.| .|.||+.+++.|...|. .|+...|+..... ...........++.+++..+|+|+.+....
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~ 79 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV 79 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEeec
Confidence 5799999 79999999999998885 5655656542211 001111122345567788999998776543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=88.80 E-value=0.25 Score=42.34 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=39.5
Q ss_pred EEEEEeCChhhHHHHHHHh-hCCCEEEEE-CCCCCCCCccc-ccCceecCCHHHHhcc-CCEEEEccCC
Q 006758 164 VLGIVGRSASARALATRSL-SFKMSVLYF-DVPEGKGKVTF-PSAARRMDTLNDLLAA-SDVISLHCAV 228 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lk-afGm~V~~~-dr~~~~~~~~~-~~g~~~~~sL~eLL~~-ADVV~l~lPl 228 (632)
+|.|+|+|.+|+.+++.+. .-|++++++ |..+...-... ...+...+.++++..+ .+++++++|.
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~~ 73 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR 73 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCCH
Confidence 6999999999999998765 457887776 65443221111 1112234556665543 4666666663
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=88.75 E-value=0.32 Score=46.16 Aligned_cols=87 Identities=9% Similarity=0.062 Sum_probs=57.1
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCC-h--hhHh
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVT-D--ETIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT-~--~T~~ 234 (632)
+|+||++.|.|-+. ||.++|+.+...|++|++..++....+ ....+........+.+.++=++ + +...
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 73 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT--------ALAELKAINPKVNITFHTYDVTVPVAESKK 73 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH--------HHHHHHHHCTTSEEEEEECCTTSCHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH--------HHHHHHhhCCCCCEEEEEeecCCCHHHHHH
Confidence 48999999999885 999999999999999888876543321 0123445555667777777665 2 3455
Q ss_pred hccHHHHhccCCCcEEEEcC
Q 006758 235 IINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvg 254 (632)
+++. ..+...+=-+|||.+
T Consensus 74 ~~~~-~~~~~g~iDilvnnA 92 (254)
T d1sbya1 74 LLKK-IFDQLKTVDILINGA 92 (254)
T ss_dssp HHHH-HHHHHSCCCEEEECC
T ss_pred HHHH-HHHHcCCCCEEEeCC
Confidence 5543 333343222666765
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=88.43 E-value=0.18 Score=47.99 Aligned_cols=88 Identities=20% Similarity=0.119 Sum_probs=54.7
Q ss_pred cccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHH-hccCCEEEEccCCChh--hHh
Q 006758 159 RCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDL-LAASDVISLHCAVTDE--TIQ 234 (632)
Q Consensus 159 ~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eL-L~~ADVV~l~lPlT~~--T~~ 234 (632)
+|+||++.|.|. +.||+++|+.|...|++|++.+++....+.. ...+... ....++..+.+-++.. ...
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~-------~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~ 74 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEET-------RQQILAAGVSEQNVNSVVADVTTDAGQDE 74 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-------HHHHHHTTCCGGGEEEEECCTTSHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-------HHHHHhcCCCcCceEEEEccCCCHHHHHH
Confidence 589999999886 6799999999999999999999875322100 0111111 1223466666665543 445
Q ss_pred hccHHHHhccCCCcEEEEcC
Q 006758 235 IINAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 235 lI~~~~L~~MK~GAvLINvg 254 (632)
+++ ...+.+.+=-+|||.+
T Consensus 75 ~~~-~~~~~~g~iDilvnnA 93 (264)
T d1spxa_ 75 ILS-TTLGKFGKLDILVNNA 93 (264)
T ss_dssp HHH-HHHHHHSCCCEEEECC
T ss_pred HHH-HHHHHhCCCCEeeccc
Confidence 553 3344444444777765
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=88.33 E-value=0.12 Score=46.35 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=61.3
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCce---e---cCCHHHHh-----ccCCEEEEccCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAAR---R---MDTLNDLL-----AASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~---~---~~sL~eLL-----~~ADVV~l~lPl 228 (632)
.|.+|.|.|. |.+|...++.++..|++|++..++....+.....+.. . ....+.++ ...|+|+-++.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence 6899999998 6699999999999999999998775432211111111 1 11122222 33799999885
Q ss_pred ChhhHhhccHHHHhccCCCcEEEEcCCC
Q 006758 229 TDETIQIINAECLQHIKPGAFLVNTGSS 256 (632)
Q Consensus 229 T~~T~~lI~~~~L~~MK~GAvLINvgRG 256 (632)
.++ + ...++.|+++..+|.+|..
T Consensus 108 -~~~---~-~~~~~~l~~~G~~v~~G~~ 130 (182)
T d1v3va2 108 -GEF---L-NTVLSQMKDFGKIAICGAI 130 (182)
T ss_dssp -HHH---H-HHHGGGEEEEEEEEECCCG
T ss_pred -chh---h-hhhhhhccCCCeEEeecce
Confidence 232 2 4678889999999998764
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.28 E-value=0.21 Score=47.09 Aligned_cols=41 Identities=17% Similarity=0.030 Sum_probs=36.1
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCCCCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPEGKGK 199 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~~~~~ 199 (632)
.|+||++.|.|.+. ||+++|+.|...|++|++.+++....+
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~ 45 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK 45 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence 47999999999875 999999999999999999999865443
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=88.25 E-value=0.29 Score=45.20 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=44.1
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhc--cCCEEEEccCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLA--ASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~--~ADVV~l~lPlT 229 (632)
++|.|+|. |-||+.+++.|...|.+|++.|+..... .....+++++. ..|+|+-+.-..
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~--------~d~~~~~~~l~~~~~d~vih~a~~~ 63 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDI--------TNVLAVNKFFNEKKPNVVINCAAHT 63 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT--------TCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccC--------CCHHHHHHHHHHcCCCEEEeecccc
Confidence 56899997 9999999999999999999999865221 11245667776 458887665543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.39 Score=44.17 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=50.2
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccC-------ceecCCHHHHhccCCEEEEccCCC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSA-------ARRMDTLNDLLAASDVISLHCAVT 229 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g-------~~~~~sL~eLL~~ADVV~l~lPlT 229 (632)
..+++|.|.| .|-||+.+++.|..-|. +|++++|++.......... .....++.+.+..+|+|+.++..+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~ 91 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT 91 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence 5788999998 79999999999987674 8999998754332111111 112345667789999999887654
Q ss_pred h
Q 006758 230 D 230 (632)
Q Consensus 230 ~ 230 (632)
.
T Consensus 92 ~ 92 (232)
T d2bkaa1 92 R 92 (232)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.00 E-value=0.094 Score=50.05 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=53.2
Q ss_pred cccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh--hHhh
Q 006758 159 RCRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE--TIQI 235 (632)
Q Consensus 159 ~L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~--T~~l 235 (632)
+|+||++.|.|.+ .||+++|+.|...|++|++.+++....+. ....+.+. ..+++.+.+=++.. ...+
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~-------~~~~l~~~--g~~~~~~~~Dvs~~~~~~~~ 78 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH-------VVDEIQQL--GGQAFACRCDITSEQELSAL 78 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHH-------HHHHHHHT--TCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHHc--CCcEEEEEccCCCHHHHHHH
Confidence 5899999999975 59999999999999999999986532210 01122221 23566666665542 4444
Q ss_pred ccHHHHhccCCCcEEEEcC
Q 006758 236 INAECLQHIKPGAFLVNTG 254 (632)
Q Consensus 236 I~~~~L~~MK~GAvLINvg 254 (632)
++ ...+.+.+=-+|||.+
T Consensus 79 ~~-~~~~~~g~iDilvnnA 96 (255)
T d1fmca_ 79 AD-FAISKLGKVDILVNNA 96 (255)
T ss_dssp HH-HHHHHHSSCCEEEECC
T ss_pred HH-HHHHHcCCCCEeeeCC
Confidence 43 2333333333666654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=87.74 E-value=0.23 Score=47.07 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=32.5
Q ss_pred ccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|+||++.|.|.+. ||+++|+.|...|++|++.+++.
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~ 38 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD 38 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899998888766 99999999999999999999874
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.51 E-value=0.16 Score=48.25 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=33.9
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
..|.||++.|.|. +.||+++|+.|...|++|++++++.
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~ 44 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ 44 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 3588999999998 4699999999999999999999865
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=87.47 E-value=0.22 Score=46.61 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=32.5
Q ss_pred ccCcEEEEEeC-Ch--hhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGR-SA--SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGl-G~--IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|+||++.|.|. |. ||.++|+.|...|++|++.+++.
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 79999999996 54 99999999999999999988765
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=87.33 E-value=0.49 Score=45.37 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=54.1
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChhhHhhcc--
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDETIQIIN-- 237 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~T~~lI~-- 237 (632)
..|++|++||+- .....++.-|+++.++++++.... .....-++++++||+|++.-- -++|
T Consensus 120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~gd-------~p~~~~~~lLp~aD~viiTGs------TlvN~T 182 (251)
T d2h1qa1 120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEEGD-------YPLPASEFILPECDYVYITCA------SVVDKT 182 (251)
T ss_dssp TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCTTC-------EEGGGHHHHGGGCSEEEEETH------HHHHTC
T ss_pred cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCCCC-------CCchHHHHhhhcCCEEEEEec------hhhcCC
Confidence 479999999974 455667778899999999875432 112345789999999998742 2343
Q ss_pred -HHHHhccCCCcEEEEcC
Q 006758 238 -AECLQHIKPGAFLVNTG 254 (632)
Q Consensus 238 -~~~L~~MK~GAvLINvg 254 (632)
...|++.|+.+.+|=+|
T Consensus 183 l~~LL~~~~~a~~vvl~G 200 (251)
T d2h1qa1 183 LPRLLELSRNARRITLVG 200 (251)
T ss_dssp HHHHHHHTTTSSEEEEES
T ss_pred HHHHHHhCCcCCEEEEEC
Confidence 34677777776565444
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.32 E-value=0.19 Score=47.56 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=53.2
Q ss_pred ccCcEEEEEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh--hHhhc
Q 006758 160 CRGLVLGIVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE--TIQII 236 (632)
Q Consensus 160 L~GktVGIIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~--T~~lI 236 (632)
+.||++.|.|.+ .||+++|+.|...|++|++.+++....+. ....+.+......++.+.|=++.. ...++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~-------~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~ 73 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQ-------CKAALHEQFEPQKTLFIQCDVADQQQLRDTF 73 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------HHHHHTTTSCGGGEEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHHhcCCCcEEEEEeecCCHHHHHHHH
Confidence 368999999874 59999999999999999999987543220 011222222334555555555443 44555
Q ss_pred cHHHHhccCCCcEEEEcCC
Q 006758 237 NAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 237 ~~~~L~~MK~GAvLINvgR 255 (632)
. ...+.+.+=-+|||.+-
T Consensus 74 ~-~~~~~~G~iDilVnnAg 91 (254)
T d2gdza1 74 R-KVVDHFGRLDILVNNAG 91 (254)
T ss_dssp H-HHHHHHSCCCEEEECCC
T ss_pred H-HHHHHcCCcCeeccccc
Confidence 3 23333333336677653
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=87.26 E-value=0.21 Score=44.83 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=31.0
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
++|.|||.|..|...|..|+..|++|++++....
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4699999999999999999999999999998653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.23 E-value=0.69 Score=40.51 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=32.7
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKM-SVLYFDVPEGKG 198 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~~~ 198 (632)
.|.+|.|+|.|.+|...+..++.+|. +|++.|++....
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl 66 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF 66 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH
Confidence 68999999999999999999998876 788888876443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=87.20 E-value=0.19 Score=48.74 Aligned_cols=85 Identities=7% Similarity=0.002 Sum_probs=56.1
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCc-c--cccCce--e------cCCHHHHhccCCEEEEccCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKV-T--FPSAAR--R------MDTLNDLLAASDVISLHCAV 228 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~-~--~~~g~~--~------~~sL~eLL~~ADVV~l~lPl 228 (632)
..|||.|+| .|.||+.+++.|...|.+|.+..|+...... . ...++. . .+.++.++..+|++++..+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~ 81 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 81 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence 358999999 5999999999999999999999886543210 0 001111 0 11256788889999988775
Q ss_pred Chh-----hHhhccHHHHhccC
Q 006758 229 TDE-----TIQIINAECLQHIK 245 (632)
Q Consensus 229 T~~-----T~~lI~~~~L~~MK 245 (632)
... +..++++..-...+
T Consensus 82 ~~~~~~~~~~~~~~aa~~agv~ 103 (350)
T d1xgka_ 82 QAGDEIAIGKDLADAAKRAGTI 103 (350)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCC
T ss_pred ccchhhhhhhHHHHHHHHhCCC
Confidence 442 45555554444433
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=87.15 E-value=0.65 Score=43.76 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=33.3
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|+||++.|.| -+.||+++|+.|...|++|++.+++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~ 39 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP 39 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 7999999999 56799999999999999999999875
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=86.94 E-value=0.15 Score=48.86 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=34.0
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
++|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~ 41 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK 41 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3699999999985 6799999999999999999999875
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.91 E-value=0.48 Score=44.53 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=33.8
Q ss_pred ccccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 158 RRCRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 158 ~~L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.+|.||++.|.|. +.||+++|+.|...|++|++.+++..
T Consensus 2 ~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~ 41 (245)
T d2ag5a1 2 GRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES 41 (245)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3589999888765 67999999999999999999998753
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.33 E-value=0.37 Score=44.34 Aligned_cols=37 Identities=22% Similarity=0.088 Sum_probs=34.2
Q ss_pred ccCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 160 CRGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 160 L~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
-.+++|.|||.|..|-..|..|+..|++|.+++....
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 4789999999999999999999999999999997764
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=86.18 E-value=0.32 Score=42.88 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=59.5
Q ss_pred CcEEEEEeC-ChhhHHHHHHHhhCCC-------EEEEECCCCCCCC------------cccccCceecCCHHHHhccCCE
Q 006758 162 GLVLGIVGR-SASARALATRSLSFKM-------SVLYFDVPEGKGK------------VTFPSAARRMDTLNDLLAASDV 221 (632)
Q Consensus 162 GktVGIIGl-G~IG~~vA~~LkafGm-------~V~~~dr~~~~~~------------~~~~~g~~~~~sL~eLL~~ADV 221 (632)
-.+|.|||. |.+|+.+|-.|...++ ....++....... ...........+..+.+++||+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv 83 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence 347999996 9999999999875332 2333333221111 0011122334678899999999
Q ss_pred EEEccCCChh---h--------Hhhcc--HHHHhc-cCCCcEEEEcCCChhhcHHHHH
Q 006758 222 ISLHCAVTDE---T--------IQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVK 265 (632)
Q Consensus 222 V~l~lPlT~~---T--------~~lI~--~~~L~~-MK~GAvLINvgRG~iVDe~AL~ 265 (632)
|+++.-.... + ..++- ...+.. .+++++++.++. .+|.-..+
T Consensus 84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~~ 139 (154)
T d1y7ta1 84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNALI 139 (154)
T ss_dssp EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHHH
Confidence 9998743321 2 12221 123333 467888888864 57765543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.94 E-value=0.23 Score=43.77 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=44.8
Q ss_pred cEEEEEe-CChhhHHHHHHHhh---CC----CEEEEECCCCCCCC----------cccc--cCceecCCHHHHhccCCEE
Q 006758 163 LVLGIVG-RSASARALATRSLS---FK----MSVLYFDVPEGKGK----------VTFP--SAARRMDTLNDLLAASDVI 222 (632)
Q Consensus 163 ktVGIIG-lG~IG~~vA~~Lka---fG----m~V~~~dr~~~~~~----------~~~~--~g~~~~~sL~eLL~~ADVV 222 (632)
.+|.||| .|.+|..+|-.|.. || ..+..+|....... ..+. .......+..+.+.+||+|
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV 83 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence 4799999 59999999998864 33 26788887643221 0111 1122346788999999999
Q ss_pred EEccCC
Q 006758 223 SLHCAV 228 (632)
Q Consensus 223 ~l~lPl 228 (632)
+++...
T Consensus 84 Vitag~ 89 (154)
T d5mdha1 84 ILVGSM 89 (154)
T ss_dssp EECCSC
T ss_pred EEeccc
Confidence 998743
|
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=85.92 E-value=0.96 Score=44.35 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=47.9
Q ss_pred ccCcEEEEEeC---ChhhHHHHHHHhhCC-CEEEEECCCCCCCCc-------ccccCceecCCHHHHhccCCEEEEc
Q 006758 160 CRGLVLGIVGR---SASARALATRSLSFK-MSVLYFDVPEGKGKV-------TFPSAARRMDTLNDLLAASDVISLH 225 (632)
Q Consensus 160 L~GktVGIIGl---G~IG~~vA~~LkafG-m~V~~~dr~~~~~~~-------~~~~g~~~~~sL~eLL~~ADVV~l~ 225 (632)
+.|++|+++|- +++..+++..+..|| +.|.++.|..-.... ..........++++.+.++|||...
T Consensus 152 l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~ 228 (310)
T d1tuga1 152 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMT 228 (310)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEEC
T ss_pred cccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeec
Confidence 78999999997 778888888888885 789988875422210 0111233457899999999998753
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.92 E-value=0.41 Score=43.09 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=32.1
Q ss_pred cCcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
+..+|.|||.|.-|-..|..|+..|++|+++..+..
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r 39 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 39 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 456799999999999999999999999999987653
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=85.80 E-value=1.1 Score=40.35 Aligned_cols=104 Identities=12% Similarity=0.046 Sum_probs=66.1
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhh---CCC----EEEEECCCCCCCC----------ccc--ccCceecCCHHHHhccCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLS---FKM----SVLYFDVPEGKGK----------VTF--PSAARRMDTLNDLLAASD 220 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~Lka---fGm----~V~~~dr~~~~~~----------~~~--~~g~~~~~sL~eLL~~AD 220 (632)
+-.+|.|+|. |.||..++-+|.. ||. .+..+|....... ..+ ........+..+.+.++|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 3457999996 9999999998874 564 6777786543211 011 112234578899999999
Q ss_pred EEEEccCCChh-----------hHhhcc--HHHHhc-cCCCcEEEEcCCChhhcHHHHHH
Q 006758 221 VISLHCAVTDE-----------TIQIIN--AECLQH-IKPGAFLVNTGSSQLLDDCAVKQ 266 (632)
Q Consensus 221 VV~l~lPlT~~-----------T~~lI~--~~~L~~-MK~GAvLINvgRG~iVDe~AL~~ 266 (632)
+|++..-.... +..++- .+.+.. .+++++++=++. .+|.-+++.
T Consensus 103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia 160 (175)
T d7mdha1 103 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC 160 (175)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred eEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence 99998743221 222221 224444 466787777754 688888763
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=85.72 E-value=0.28 Score=46.54 Aligned_cols=36 Identities=19% Similarity=0.027 Sum_probs=32.8
Q ss_pred cccCcEEEEEeCC---hhhHHHHHHHhhCCCEEEEECCC
Q 006758 159 RCRGLVLGIVGRS---ASARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 159 ~L~GktVGIIGlG---~IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.|+||++.|.|.+ .||+++|+.|...|++|++.++.
T Consensus 5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV 43 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 5899999999986 59999999999999999998764
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=85.64 E-value=0.46 Score=42.66 Aligned_cols=89 Identities=8% Similarity=0.068 Sum_probs=55.3
Q ss_pred cCcEEEEE--eCChhhHHHHHHHhhCCCEEEEECCCCCCCCc----ccccCceec--------CC----HHHHh----cc
Q 006758 161 RGLVLGIV--GRSASARALATRSLSFKMSVLYFDVPEGKGKV----TFPSAARRM--------DT----LNDLL----AA 218 (632)
Q Consensus 161 ~GktVGII--GlG~IG~~vA~~LkafGm~V~~~dr~~~~~~~----~~~~g~~~~--------~s----L~eLL----~~ 218 (632)
.|.++.|+ |.|.+|....+.++.+|++|++.-+.....+. ....++..+ .. +.++. ..
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence 57888888 67999999999999999999988655432210 011121111 01 11211 23
Q ss_pred CCEEEEccCCChhhHhhccHHHHhccCCCcEEEEcCC
Q 006758 219 SDVISLHCAVTDETIQIINAECLQHIKPGAFLVNTGS 255 (632)
Q Consensus 219 ADVV~l~lPlT~~T~~lI~~~~L~~MK~GAvLINvgR 255 (632)
.|+|+-++. .++ ....+..|+++..+|.+|.
T Consensus 108 vdvv~D~vg--~~~----~~~~~~~l~~~G~~v~~G~ 138 (189)
T d1gu7a2 108 AKLALNCVG--GKS----STGIARKLNNNGLMLTYGG 138 (189)
T ss_dssp EEEEEESSC--HHH----HHHHHHTSCTTCEEEECCC
T ss_pred ceEEEECCC--cch----hhhhhhhhcCCcEEEEECC
Confidence 688887764 111 1456777888888888763
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.52 E-value=0.39 Score=46.73 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=32.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|+|.|||.|..|..+|..|+..|.+|++++.+..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 58999999999999999999999999999998764
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.45 E-value=0.53 Score=42.22 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=42.2
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCC--EEEEECCCCCCCCcccccCceecCCH----HHHhccCCEEEEccCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKM--SVLYFDVPEGKGKVTFPSAARRMDTL----NDLLAASDVISLHCAVT 229 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm--~V~~~dr~~~~~~~~~~~g~~~~~sL----~eLL~~ADVV~l~lPlT 229 (632)
|+|.|+|. |-||+.+++.|...|. +|+...|+......... ....++ +.+....|+|+.|+-.+
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~---~~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLD---NPVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEE---CCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhccccc---ccccchhhhhhccccchheeeeeeeee
Confidence 78999998 9999999999998886 67766665432211111 111233 33444579999887554
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=85.39 E-value=0.31 Score=42.10 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=29.7
Q ss_pred EEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
+|.|||.|..|-..|..|+..|+ +|+++++...
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~ 35 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence 48999999999999999999997 6999998653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.35 E-value=0.19 Score=47.55 Aligned_cols=36 Identities=19% Similarity=-0.005 Sum_probs=31.3
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVP 194 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~ 194 (632)
.|.||++.|.|.+. ||+++|+.|...|++|++..++
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~ 39 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS 39 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence 48999999998765 9999999999999999886543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.24 E-value=0.6 Score=45.21 Aligned_cols=67 Identities=18% Similarity=0.047 Sum_probs=45.5
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCCCcccccC--c-----eecCCHHHHhccCCEEEEccC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKGKVTFPSA--A-----RRMDTLNDLLAASDVISLHCA 227 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g--~-----~~~~sL~eLL~~ADVV~l~lP 227 (632)
.+++|.|.| .|-||+.|++.|..-|.+|+++|+............ . .....+.+++...|+|+.+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~ 88 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA 88 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeeccc
Confidence 678899998 899999999999999999999987543322111110 1 112234456778898776553
|
| >d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Trefoil superfamily: Actin-crosslinking proteins family: Histidine-rich actin-binding protein (hisactophilin) domain: Histidine-rich actin-binding protein (hisactophilin) species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.95 E-value=0.96 Score=38.38 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=60.4
Q ss_pred EEEEecCCceEEeeecccccceEEeecccccCCCccceEEEeecCccccccccccCCceeeecccceEEEeecccccccc
Q 006758 510 ALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKDTIGLRSFTAGGKLLQINRRMEFVFASHSFDAWES 589 (632)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (632)
||| +..|-|++.. ++| +|+. -...++-.+|-|..+..+|-|||. -||.|.+...=.++-.++...-||-
T Consensus 5 ~lr--s~~gkyL~a~---~~~--v~~~--~~~~~~~~~F~ve~~~g~iaLks~--~GkYlsa~~~g~l~~~~~~~~~~E~ 73 (118)
T d1hcda_ 5 AFK--SHHGHFLSAE---GEA--VKTH--HGHHDHHTHFHVENHGGKVALKTH--CGKYLSIGDHKQVYLSHHLHGDHSL 73 (118)
T ss_dssp EEE--SSTTCEEEEE---TTE--EEEE--CSCSSCCCCCEEEEETTEEEEESS--SSCEEEEEETTEEEEECCCSSSSSS
T ss_pred EeE--cCCCcEEeec---CCc--eEee--CCCCCCCceEEEEcCCCEEEEEeC--CCCEEEecCCCcEEEeccCCCCceE
Confidence 454 4778888754 333 5543 466688999999555699999994 6899999877667777788899999
Q ss_pred ceeccccceeeeec
Q 006758 590 WAIEGPLEECRLVN 603 (632)
Q Consensus 590 ~~~~~~~~~~~~~~ 603 (632)
|.+|=+---+.|..
T Consensus 74 F~ie~~~g~valrs 87 (118)
T d1hcda_ 74 FHLEHHGGKVSIKG 87 (118)
T ss_dssp BEEEEETTEEEEEC
T ss_pred EEEEECCCEEEEEe
Confidence 99985433366654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=84.82 E-value=0.18 Score=44.65 Aligned_cols=36 Identities=0% Similarity=-0.199 Sum_probs=31.2
Q ss_pred cCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 161 RGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 161 ~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
.|.+|.|+|. |.+|..+.+.++.+|++|++.+++..
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~ 64 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ 64 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence 5889999955 55999999999999999999988764
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.70 E-value=0.4 Score=41.41 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=30.0
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCCC
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPEG 196 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~~ 196 (632)
|.|||.|..|...|..|...|.+|++++++..
T Consensus 8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 78999999999999999999999999998764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=83.73 E-value=0.47 Score=44.14 Aligned_cols=36 Identities=17% Similarity=0.005 Sum_probs=33.0
Q ss_pred ccCcEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 160 CRGLVLGIVGR-SASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 160 L~GktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~ 38 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE 38 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 68999999997 4599999999999999999999875
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.41 E-value=0.25 Score=44.32 Aligned_cols=38 Identities=5% Similarity=-0.130 Sum_probs=32.8
Q ss_pred cCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 006758 161 RGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKG 198 (632)
Q Consensus 161 ~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~ 198 (632)
.|.+|.|-| .|.+|....+.++.+|++|++..++....
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~ 61 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 61 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH
Confidence 566788988 59999999999999999999998876543
|
| >d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Trefoil superfamily: Actin-crosslinking proteins family: Histidine-rich actin-binding protein (hisactophilin) domain: Histidine-rich actin-binding protein (hisactophilin) species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.19 E-value=1.1 Score=37.91 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=53.2
Q ss_pred EEEEEEecCCceEEeeecccccceEEeecccccCCCccceEEEeecCccccccccccCCceeeecccceEEEe-ec-ccc
Q 006758 508 VVALYARDRPALHISRQRHKGGGWILETMSNVTKRDPAAQFLICKSKDTIGLRSFTAGGKLLQINRRMEFVFA-SH-SFD 585 (632)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 585 (632)
-|||++ ..|.||+=+. +|. ++.|.+...+-.+|.+.++..++.||| +.||-|++..--.+--. +| +.+
T Consensus 42 ~iaLks--~~GkYlsa~~--~g~----l~~~~~~~~~~E~F~ie~~~g~valrs--~nGkylsa~~~g~v~~n~~~~~~~ 111 (118)
T d1hcda_ 42 KVALKT--HCGKYLSIGD--HKQ----VYLSHHLHGDHSLFHLEHHGGKVSIKG--HHHHYISADHHGHVSTKEHHDHDT 111 (118)
T ss_dssp EEEEES--SSSCEEEEEE--TTE----EEEECCCSSSSSSBEEEEETTEEEEEC--STTCEEEECGGGCEEEESSCSSTT
T ss_pred EEEEEe--CCCCEEEecC--CCc----EEEeccCCCCceEEEEEECCCEEEEEe--CCCCEEEEcCCCceeeEcCCCCCC
Confidence 588886 5788998652 332 334667777889999977889999998 57999999654444333 33 345
Q ss_pred cccccee
Q 006758 586 AWESWAI 592 (632)
Q Consensus 586 ~~~~~~~ 592 (632)
.||.|++
T Consensus 112 ~WE~f~i 118 (118)
T d1hcda_ 112 TFEEIII 118 (118)
T ss_dssp CBEEECC
T ss_pred CceeEEC
Confidence 7999874
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.13 E-value=1.3 Score=39.26 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=21.9
Q ss_pred EEEEEeCChhhHHHHHHHhhC----CCEEEEE
Q 006758 164 VLGIVGRSASARALATRSLSF----KMSVLYF 191 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lkaf----Gm~V~~~ 191 (632)
.|+|+|+|.+|+.+++.+... ..+|.+.
T Consensus 6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i 37 (168)
T d1ebfa1 6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLL 37 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEE
Confidence 599999999999999988752 3355554
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=82.12 E-value=0.63 Score=44.84 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=29.4
Q ss_pred cEEEEEeCChhhHHHHHHHhhCC--CEEEEECCCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFK--MSVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafG--m~V~~~dr~~~ 196 (632)
|+|+|||.|..|-.+|..|+..| .+|.++++...
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 68999999999999999887644 69999998754
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=82.04 E-value=0.57 Score=38.75 Aligned_cols=35 Identities=11% Similarity=-0.280 Sum_probs=29.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhh---CCCEEEEECCCCC
Q 006758 162 GLVLGIVGRSASARALATRSLS---FKMSVLYFDVPEG 196 (632)
Q Consensus 162 GktVGIIGlG~IG~~vA~~Lka---fGm~V~~~dr~~~ 196 (632)
.+++.|||-|.||-.+|..+.+ .|.+|..+.+...
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence 4789999999999999987654 4899999987653
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.04 E-value=0.97 Score=43.07 Aligned_cols=33 Identities=18% Similarity=-0.039 Sum_probs=27.5
Q ss_pred cEE-EEEe-CChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 163 LVL-GIVG-RSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 163 ktV-GIIG-lG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|+| .|.| .|-||+.+++.|...|.+|+++|+..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 456 4555 57899999999999999999999864
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.87 E-value=0.35 Score=45.69 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=47.3
Q ss_pred cEEE-EEeCC-hhhHHHHHHHhhCCCEEEEECCCCCCCCcccccCceecCCHHHHhccCCEEEEccCCChh--hHhhccH
Q 006758 163 LVLG-IVGRS-ASARALATRSLSFKMSVLYFDVPEGKGKVTFPSAARRMDTLNDLLAASDVISLHCAVTDE--TIQIINA 238 (632)
Q Consensus 163 ktVG-IIGlG-~IG~~vA~~LkafGm~V~~~dr~~~~~~~~~~~g~~~~~sL~eLL~~ADVV~l~lPlT~~--T~~lI~~ 238 (632)
|+|. |.|.+ .||+++|+.|...|++|++.+++....+. ....+.+. ..+++.+.|=++.. ...++.
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~-------~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~- 70 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKA-------VASEINQA--GGHAVAVKVDVSDRDQVFAAVE- 70 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------HHHHHHHT--TCCEEEEECCTTSHHHHHHHHH-
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHH-------HHHHHHhc--CCcEEEEEeeCCCHHHHHHHHH-
Confidence 3454 55654 59999999999999999999987532210 01112221 23566666665553 444543
Q ss_pred HHHhccCCCcEEEEcC
Q 006758 239 ECLQHIKPGAFLVNTG 254 (632)
Q Consensus 239 ~~L~~MK~GAvLINvg 254 (632)
...+.+.+=-+|||.+
T Consensus 71 ~~~~~~g~iDilVnnA 86 (255)
T d1gega_ 71 QARKTLGGFDVIVNNA 86 (255)
T ss_dssp HHHHHTTCCCEEEECC
T ss_pred HHHHHhCCccEEEecc
Confidence 3344443333677654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.63 E-value=0.45 Score=45.46 Aligned_cols=37 Identities=24% Similarity=0.099 Sum_probs=33.4
Q ss_pred cccCcEEEEEeCCh-hhHHHHHHHhhCCCEEEEECCCC
Q 006758 159 RCRGLVLGIVGRSA-SARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 159 ~L~GktVGIIGlG~-IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
+|+||++.|.|.+. ||+++|+.|...|++|++.+++.
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 38 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE 38 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47899999999864 99999999999999999999875
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.49 E-value=0.28 Score=44.45 Aligned_cols=39 Identities=5% Similarity=-0.164 Sum_probs=33.8
Q ss_pred ccCcEEEEEe-CChhhHHHHHHHhhCCCEEEEECCCCCCC
Q 006758 160 CRGLVLGIVG-RSASARALATRSLSFKMSVLYFDVPEGKG 198 (632)
Q Consensus 160 L~GktVGIIG-lG~IG~~vA~~LkafGm~V~~~dr~~~~~ 198 (632)
..|.+|.|.| .|.+|....+.++.+|++|++..++....
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~ 69 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH 69 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH
Confidence 3688999999 69999999999999999999998776443
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.39 E-value=0.75 Score=41.59 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=29.0
Q ss_pred EEEEEeCChhhHHHHHHHh--hCCCEEEEECCCCC
Q 006758 164 VLGIVGRSASARALATRSL--SFKMSVLYFDVPEG 196 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~Lk--afGm~V~~~dr~~~ 196 (632)
+|+|||.|..|...|..|+ .+|++|.+|+....
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 6999999999999999885 47899999997753
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.66 E-value=0.43 Score=44.51 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=30.1
Q ss_pred EEEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 164 VLGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 164 tVGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
.|.|||.|..|..+|..|+..|.+|.++++.+
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 58999999999999999999999999999865
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.45 E-value=0.77 Score=41.57 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=30.5
Q ss_pred cEEEEEeCChhhHHHHHHHhhCCC-EEEEECCCCC
Q 006758 163 LVLGIVGRSASARALATRSLSFKM-SVLYFDVPEG 196 (632)
Q Consensus 163 ktVGIIGlG~IG~~vA~~LkafGm-~V~~~dr~~~ 196 (632)
..|.|||.|..|..+|..|+..|. .|.++++...
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 369999999999999999999996 9999998653
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=80.19 E-value=0.62 Score=42.90 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=29.4
Q ss_pred EEEEeCChhhHHHHHHHhhCCCEEEEECCCC
Q 006758 165 LGIVGRSASARALATRSLSFKMSVLYFDVPE 195 (632)
Q Consensus 165 VGIIGlG~IG~~vA~~LkafGm~V~~~dr~~ 195 (632)
|.|||.|.+|..+|..|...|.+|+++|+..
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 8999999999999999999999999999864
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.13 E-value=0.7 Score=42.67 Aligned_cols=35 Identities=17% Similarity=0.075 Sum_probs=28.8
Q ss_pred cEEEEEeC-ChhhHHHHHHHhhCCCEEEEECCCCCC
Q 006758 163 LVLGIVGR-SASARALATRSLSFKMSVLYFDVPEGK 197 (632)
Q Consensus 163 ktVGIIGl-G~IG~~vA~~LkafGm~V~~~dr~~~~ 197 (632)
.+|.|.|. |.||+++|+.|...|++|++.|+....
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~ 38 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND 38 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence 34566664 679999999999999999999987643
|