Citrus Sinensis ID: 006762

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MDYSSQEESDISDSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLKELGDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLKRKRT
ccccccccccccHHHHHHHHHcHHHHHHccccEEEccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHccccccEEEEEccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccc
ccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccEEcccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEcccEEEEEEccccccccccccccHHHHHHHHcccccEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEEEHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHccc
mdyssqeesdisdSEINEYLEKPyeelragkykvrvngtlrcpfcsgkkkqdykhkdllqhasgvgkgsanrSAKQKANHLALAKYLEVdlaggvdkpqrpvlpqpvnqnpeqedlyvwpWMGIIVNIVMETkdrgsfldsgywlkrfavfkpvevrifwneenptaQAVVKFNndwngfmqasdfekafdadhqgkrhwiarkespglriygwfaraddntsegpigeylrqegklrtvsDIVQEDAQSKIHVVAHLASkidmknedlSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTnigvkrlgeidpkpfqdacknkfpleEAQVEASTLCSLWQenlkatewhpfkiihvegtpkeiiDEEDEKIKSLKELGDEIYMAVTTALKElneynpsgryvipdlwnfkegrKATLKEVISYIVGNIRRLKRKRT
mdyssqeesdisdseiNEYLEKPyeelragkykvrvngTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQrpvlpqpvnqnpeqedlyVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKrhwiarkespglriYGWFAraddntsegpigEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEqeklsceletkkkkldswskqlnkrealtererqkldadrqqndlrnNSLQlasmeqkkadENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELeskiddldeMESLNKTLIAkerqsndelQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENlkatewhpfkiihvegtpkeiideEDEKIKSLKELGDEIYMAVTTALkelneynpSGRYVIPDLWNFKEGRKATLKEVIsyivgnirrlkrkrt
MDYssqeesdisdseineYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPkeiideedekikSLKELGDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLKRKRT
***********************YEELRAGKYKVRVNGTLRCPFCSG*********************************LALAKYLEVDLAG*********************DLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADD******IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDM*******LQCKFN**************RLHYAFVE****************************************************************************************************************************************************************************************LIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVE********************GDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRR******
*****************EYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQ*******************************************************LYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIA***SPGLRIYGWFARADDNTSEGPIG**********************************************************************************************************************************************************************************************************************************************************************************************************EASTLCSLWQENLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLKELGDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNI*RL*****
************DSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHA*****************HLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLKELGDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLKRKRT
***********SDSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGG******************QEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLKELGDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLK****
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MDYSSQEESDISDSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWPWMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGDEDDAAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSDLIGARTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLKELGDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLKRKRT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
255572749637 conserved hypothetical protein [Ricinus 0.998 0.990 0.718 0.0
225446269633 PREDICTED: uncharacterized protein LOC10 0.998 0.996 0.698 0.0
225446267626 PREDICTED: uncharacterized protein LOC10 0.987 0.996 0.695 0.0
147859456633 hypothetical protein VITISV_021077 [Viti 0.998 0.996 0.693 0.0
356523342629 PREDICTED: uncharacterized protein LOC10 0.990 0.995 0.681 0.0
449443750632 PREDICTED: uncharacterized protein LOC10 0.995 0.995 0.692 0.0
356526254629 PREDICTED: uncharacterized protein LOC10 0.990 0.995 0.686 0.0
147767780626 hypothetical protein VITISV_028278 [Viti 0.950 0.960 0.638 0.0
224072703626 predicted protein [Populus trichocarpa] 0.987 0.996 0.672 0.0
296090296579 unnamed protein product [Vitis vinifera] 0.912 0.996 0.646 0.0
>gi|255572749|ref|XP_002527307.1| conserved hypothetical protein [Ricinus communis] gi|223533307|gb|EEF35059.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/637 (71%), Positives = 544/637 (85%), Gaps = 6/637 (0%)

Query: 1   MDYSSQEESDISDSEINEYLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQ 60
           M+YSS EESDIS+SEIN+Y EKPY EL++GKYKV+VNGTLRCPFC+GKKKQDYK+KDLLQ
Sbjct: 1   MEYSSDEESDISESEINDYKEKPYGELKSGKYKVKVNGTLRCPFCAGKKKQDYKYKDLLQ 60

Query: 61  HASGVGKGSANRSAKQKANHLALAKYLEVDLAGGVDKPQRPVLPQPVNQNPEQEDLYVWP 120
           HA+GVGKGSANRSAKQKANH+ALA YLE DLA   D+  RP LP+PVN  P+Q DL+V P
Sbjct: 61  HATGVGKGSANRSAKQKANHVALAIYLENDLADESDQSHRPALPKPVNPTPQQVDLFVKP 120

Query: 121 WMGIIVNIVMETKDRGSFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGF 180
           WMGI+VNIV E KD  +  D+ YWLK+FA +KP EV  FW+E   T QAV+KFN+DWNGF
Sbjct: 121 WMGIVVNIVTEGKDSNALHDNAYWLKKFAQYKPSEVSTFWSEHEQTGQAVLKFNDDWNGF 180

Query: 181 MQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTV 240
           M A++FEK+F+  H  K+ W  RK +PG  +YGW ARADD+ SEGPIG++LR++GKLRT+
Sbjct: 181 MNATEFEKSFETLHHSKKDWKERKTNPGSSMYGWCARADDHDSEGPIGDFLRKKGKLRTI 240

Query: 241 SDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEE 300
           S IV+E  +S+  VVAHL++KID  N++L +LQ K+NE TMSLSRMLEEKD+LHYAF+EE
Sbjct: 241 SGIVEEATESRNSVVAHLSNKIDQTNKNLDDLQYKYNEKTMSLSRMLEEKDKLHYAFIEE 300

Query: 301 TRKMQRLARDNVRRILEEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQ 360
           TRKMQR ARDNVRRILEEQE L+ ELE+KK+KLDSWSK+LNKREALTERERQKLD ++++
Sbjct: 301 TRKMQRHARDNVRRILEEQENLNDELESKKRKLDSWSKELNKREALTERERQKLDEEKKK 360

Query: 361 NDLRNNSLQLASMEQKKADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDL 420
           ND +NNSLQLASMEQKKADENVLRLVEEQKREKEEAL+KILQLEKQLDAKQKLEMEIE+L
Sbjct: 361 NDDQNNSLQLASMEQKKADENVLRLVEEQKREKEEALNKILQLEKQLDAKQKLEMEIEEL 420

Query: 421 KGKLEVMKHLGDEDDAAVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEA 480
           KGKL+V+KHLGD+DDAAVQ+KMKEM DELE K +D  +ME+L+ TL+ KERQSNDELQ+A
Sbjct: 421 KGKLQVIKHLGDQDDAAVQRKMKEMADELEQKEEDFGDMENLHHTLVVKERQSNDELQDA 480

Query: 481 RRELIQGLSDLIGA--RTNIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQEN 538
           R+ELI GL D++ +  RTNIG+KR+GEID KPF + CK KFPLEEAQV+A+TLCSLWQEN
Sbjct: 481 RKELIAGLGDMLSSVVRTNIGIKRMGEIDQKPFLNTCKQKFPLEEAQVQATTLCSLWQEN 540

Query: 539 LKATEWHPFKII---HVEGTPKEIIDEEDEKIKSLK-ELGDEIYMAVTTALKELNEYNPS 594
           LK + W PFKI+    VEG   EI+DEEDEK+++LK E GDEIY AV TALKE+NEYN S
Sbjct: 541 LKDSSWQPFKIVPDAEVEGKVNEIVDEEDEKLQNLKLEWGDEIYNAVVTALKEINEYNAS 600

Query: 595 GRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLKRKR 631
           GRY+ P+LWNFKEGRKATLKEVI YIV NI+ LKRKR
Sbjct: 601 GRYITPELWNFKEGRKATLKEVIGYIVKNIKTLKRKR 637

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446269|ref|XP_002267670.1| PREDICTED: uncharacterized protein LOC100252420 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225446267|ref|XP_002267381.1| PREDICTED: uncharacterized protein LOC100257549 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859456|emb|CAN83544.1| hypothetical protein VITISV_021077 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523342|ref|XP_003530299.1| PREDICTED: uncharacterized protein LOC100790829 [Glycine max] Back     alignment and taxonomy information
>gi|449443750|ref|XP_004139640.1| PREDICTED: uncharacterized protein LOC101205093 [Cucumis sativus] gi|449522628|ref|XP_004168328.1| PREDICTED: uncharacterized LOC101205093 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356526254|ref|XP_003531733.1| PREDICTED: uncharacterized protein LOC100798940 [Glycine max] Back     alignment and taxonomy information
>gi|147767780|emb|CAN62667.1| hypothetical protein VITISV_028278 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224072703|ref|XP_002303841.1| predicted protein [Populus trichocarpa] gi|222841273|gb|EEE78820.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296090296|emb|CBI40115.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
TAIR|locus:2200487634 FDM1 "factor of DNA methylatio 0.966 0.963 0.572 9.1e-187
TAIR|locus:2126081635 FDM2 "AT4G00380" [Arabidopsis 0.966 0.962 0.563 8.7e-182
TAIR|locus:2825160634 FDM5 "factor of DNA methylatio 0.962 0.958 0.532 6.9e-173
TAIR|locus:2114560647 IDN2 "AT3G48670" [Arabidopsis 0.962 0.939 0.407 7.2e-123
TAIR|locus:2014754736 FDM4 "AT1G13790" [Arabidopsis 0.822 0.706 0.378 3e-112
TAIR|locus:2148323561 AT5G59390 [Arabidopsis thalian 0.806 0.909 0.325 1.5e-76
TAIR|locus:2125078554 AT4G01180 "AT4G01180" [Arabido 0.802 0.915 0.310 3.1e-67
TAIR|locus:2045121179 AT2G16490 "AT2G16490" [Arabido 0.098 0.346 0.444 7.3e-18
MGI|MGI:19154281298 Cgnl1 "cingulin-like 1" [Mus m 0.416 0.202 0.254 1e-11
UNIPROTKB|D4A1801221 Cgnl1 "Protein Cgnl1" [Rattus 0.416 0.215 0.247 1.5e-10
TAIR|locus:2200487 FDM1 "factor of DNA methylation 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1811 (642.6 bits), Expect = 9.1e-187, P = 9.1e-187
 Identities = 355/620 (57%), Positives = 454/620 (73%)

Query:    19 YLEKPYEELRAGKYKVRVNGTLRCPFCSGKKKQDYKHKDLLQHASGVGKGSANRSAKQKA 78
             Y E PY  LR G YKV+VNG LRCPFC+GKKKQDYK+K+L  HA+GV KGSA RSA QKA
Sbjct:    18 YSETPYRLLRDGTYKVKVNGQLRCPFCAGKKKQDYKYKELYAHATGVSKGSATRSALQKA 77

Query:    79 NHLALAKYLEVDLAGGVDK-PQRPVLPQPVNQN-PEQEDLYVWPWMGIIVNIVMETKDRG 136
             NHLALA +LE +LAG  +  P+ PV+P  +++  P   ++YVWPWMGI+VN + E  D+ 
Sbjct:    78 NHLALAMFLENELAGYAEPVPRPPVVPPQLDETEPNPHNVYVWPWMGIVVNPLKEADDKE 137

Query:   137 SFLDSGYWLKRFAVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKAFDADHQG 196
               LDS YWL+  + FKP+EV  FW E++     + KFN DW+GF  A++ EK F+     
Sbjct:   138 LLLDSAYWLQTLSKFKPIEVNAFWVEQDSIVGVIAKFNGDWSGFAGATELEKEFETQGSS 197

Query:   197 KRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVA 256
             K+ W  R      + YGW ARADD  S+GPIGEYL +EG+LRTVSDI Q++ Q +  V+ 
Sbjct:   198 KKEWTERSGDSESKAYGWCARADDFESQGPIGEYLSKEGQLRTVSDISQKNVQDRNTVLE 257

Query:   257 HLASKIDMKNEDLSELQCKFNETTMSLSRMLEEKDRLHYAFVEETRKMQRLARDNVRRIL 316
              L+  I M NEDL+++Q  +N T MSL R+L+EK  LH AF +ET+KMQ+++  ++++IL
Sbjct:   258 ELSDMIAMTNEDLNKVQYSYNRTAMSLQRVLDEKKNLHQAFADETKKMQQMSLRHIQKIL 317

Query:   317 EEQEKLSCELETKKKKLDSWSKQLNKREALTERERQKLDADRQQNDLRNNSLQLASMEQK 376
              ++EKLS EL+ K + L+S +KQL K EALTE +RQKLD D++++D  N SLQLAS EQK
Sbjct:   318 YDKEKLSNELDRKMRDLESRAKQLEKHEALTELDRQKLDEDKRKSDAMNKSLQLASREQK 377

Query:   377 KADENVLRLVEEQKREKEEALSKILQLEKQLDAKQKLEMEIEDLKGKLEVMKHLGDEDDA 436
             KADE+VLRLVEE +R+KE+AL+KIL LEKQLD KQ LEMEI++LKGKL+VMKHLGD+DD 
Sbjct:   378 KADESVLRLVEEHQRQKEDALNKILLLEKQLDTKQTLEMEIQELKGKLQVMKHLGDDDDE 437

Query:   437 AVQKKMKEMNDELESKIDDLDEMESLNKTLIAKERQSNDELQEARRELIQGLSDLIGART 496
             AVQKKMKEMNDEL+ K  +L+ +ES+N  L+ KERQSNDE+Q AR++LI GL+ L+GA T
Sbjct:   438 AVQKKMKEMNDELDDKKAELEGLESMNSVLMTKERQSNDEIQAARKKLIAGLTGLLGAET 497

Query:   497 NIGVKRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTP 556
             +IGVKR+GE+D KPF D CK ++   EA VEA+TLCS WQENLK   W PFK  H EGT 
Sbjct:   498 DIGVKRMGELDEKPFLDVCKLRYSANEAAVEAATLCSTWQENLKNPSWQPFK--H-EGTG 554

Query:   557 XXXXXXXXXXXXSLKEL----GDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKAT 612
                          LK+L    G E++ AV TAL E+NEYN SGRY  P+LWNFKEGRKAT
Sbjct:   555 DGAEEVVDEDDEQLKKLKREWGKEVHNAVKTALVEMNEYNASGRYTTPELWNFKEGRKAT 614

Query:   613 LKEVISYIVGNIRRLKRKRT 632
             LKEVI++I  +I+ LKRKRT
Sbjct:   615 LKEVITFISNDIKILKRKRT 634
GO:0005737 "cytoplasm" evidence=ISM
GO:0009506 "plasmodesma" evidence=IDA
GO:0003725 "double-stranded RNA binding" evidence=IDA
GO:0080188 "RNA-directed DNA methylation" evidence=IGI
GO:0003677 "DNA binding" evidence=IDA
GO:0003723 "RNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043621 "protein self-association" evidence=IPI
TAIR|locus:2126081 FDM2 "AT4G00380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825160 FDM5 "factor of DNA methylation 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114560 IDN2 "AT3G48670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014754 FDM4 "AT1G13790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148323 AT5G59390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125078 AT4G01180 "AT4G01180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045121 AT2G16490 "AT2G16490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1915428 Cgnl1 "cingulin-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|D4A180 Cgnl1 "Protein Cgnl1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
pfam03469132 pfam03469, XH, XH domain 6e-47
pfam03468116 pfam03468, XS, XS domain 7e-35
cd12266107 cd12266, RRM_like_XS, RNA recognition motif-like X 1e-27
pfam0347043 pfam03470, zf-XS, XS zinc finger domain 3e-20
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-06
pfam01496 707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
pfam09726680 pfam09726, Macoilin, Transmembrane protein 9e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
pfam09726680 pfam09726, Macoilin, Transmembrane protein 1e-04
PRK11281 1113 PRK11281, PRK11281, hypothetical protein; Provisio 1e-04
pfam05262489 pfam05262, Borrelia_P83, Borrelia P83/100 protein 1e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 6e-04
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 6e-04
PRK01156895 PRK01156, PRK01156, chromosome segregation protein 6e-04
pfam05557722 pfam05557, MAD, Mitotic checkpoint protein 8e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
pfam04156186 pfam04156, IncA, IncA protein 0.002
pfam04124339 pfam04124, Dor1, Dor1-like family 0.002
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.004
>gnl|CDD|217579 pfam03469, XH, XH domain Back     alignment and domain information 
 Score =  161 bits (408), Expect = 6e-47
 Identities = 78/132 (59%), Positives = 103/132 (78%), Gaps = 1/132 (0%)

Query: 501 KRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPKEII 560
           KR+GE+D KPF  ACK K+  E+A+V A+ LCSLW+EN+K  +WHPFK++      KE++
Sbjct: 1   KRMGELDLKPFLKACKRKYVEEDAEVRAAELCSLWEENIKDPDWHPFKVVETGEIEKEVV 60

Query: 561 DEEDEKIKSLK-ELGDEIYMAVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISY 619
           DE+DEK+K LK E G+E+Y AV  AL E+NEYNPSGRY  P+LWNFKEGRKATLKEV+ +
Sbjct: 61  DEDDEKLKKLKEEWGEEVYNAVKKALLEMNEYNPSGRYPTPELWNFKEGRKATLKEVVDF 120

Query: 620 IVGNIRRLKRKR 631
           ++  ++ LKRKR
Sbjct: 121 LLNQLKALKRKR 132

The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important. Length = 132
>gnl|CDD|217578 pfam03468, XS, XS domain Back     alignment and domain information
>gnl|CDD|240712 cd12266, RRM_like_XS, RNA recognition motif-like XS domain found in plants Back     alignment and domain information
>gnl|CDD|217580 pfam03470, zf-XS, XS zinc finger domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217933 pfam04156, IncA, IncA protein Back     alignment and domain information
>gnl|CDD|217912 pfam04124, Dor1, Dor1-like family Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
PF03469132 XH: XH domain; InterPro: IPR005379 The XH (rice ge 100.0
PF03468116 XS: XS domain; InterPro: IPR005380 The XS (rice ge 100.0
PF0347043 zf-XS: XS zinc finger domain; InterPro: IPR005381 99.74
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.97
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.89
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.8
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.44
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.38
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.38
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.36
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.3
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.24
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.08
KOG05791187 consensus Ste20-like serine/threonine protein kina 95.86
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.62
PRK11637428 AmiB activator; Provisional 95.54
PF15066527 CAGE1: Cancer-associated gene protein 1 family 95.28
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.28
PRK11637428 AmiB activator; Provisional 95.22
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 95.14
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.07
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.94
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 94.76
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 94.75
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 94.2
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.15
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 94.13
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.06
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 93.68
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 93.62
KOG0971 1243 consensus Microtubule-associated protein dynactin 93.26
KOG0964 1200 consensus Structural maintenance of chromosome pro 93.24
PHA02562562 46 endonuclease subunit; Provisional 93.24
PRK02224 880 chromosome segregation protein; Provisional 93.19
PRK09039343 hypothetical protein; Validated 92.45
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 92.35
TIGR006061311 rad50 rad50. This family is based on the phylogeno 92.27
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 92.24
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 91.98
KOG0933 1174 consensus Structural maintenance of chromosome pro 91.92
KOG09331174 consensus Structural maintenance of chromosome pro 91.8
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 91.67
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 91.37
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 91.18
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 90.88
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 89.16
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 88.74
PF05701522 WEMBL: Weak chloroplast movement under blue light; 87.68
KOG1937521 consensus Uncharacterized conserved protein [Funct 87.06
PF05701522 WEMBL: Weak chloroplast movement under blue light; 86.88
PRK04863 1486 mukB cell division protein MukB; Provisional 86.8
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 86.6
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 86.32
KOG4572 1424 consensus Predicted DNA-binding transcription fact 86.08
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 84.79
PF15272196 BBP1_C: Spindle pole body component BBP1, C-termin 84.54
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 83.83
PRK04778569 septation ring formation regulator EzrA; Provision 83.11
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 83.08
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 83.01
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 82.04
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 81.96
PF13851201 GAS: Growth-arrest specific micro-tubule binding 81.37
PRK03918 880 chromosome segregation protein; Provisional 81.22
PF05010207 TACC: Transforming acidic coiled-coil-containing p 80.8
KOG0249 916 consensus LAR-interacting protein and related prot 80.76
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 80.56
PF10174775 Cast: RIM-binding protein of the cytomatrix active 80.54
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT Back     alignment and domain information 
Probab=100.00  E-value=1e-64  Score=468.50  Aligned_cols=131  Identities=66%  Similarity=1.175  Sum_probs=130.4

Q ss_pred             cccCCCCChhhHHHHhhcCCchhHHHHHHHHhhHHHHhhcCCCCcceEEEEecCccccccCcccHHHHHHH-HhhHHHHH
Q 006762          501 KRLGEIDPKPFQDACKNKFPLEEAQVEASTLCSLWQENLKATEWHPFKIIHVEGTPKEIIDEEDEKIKSLK-ELGDEIYM  579 (632)
Q Consensus       501 KrmGeld~kpf~~ac~~k~~~~~~~~~a~~lcs~Wq~~l~~p~WhPFk~v~v~g~~keii~edD~kL~~Lk-e~Geev~~  579 (632)
                      ||||+||.+||+.||++||++++|+++|++|||+||++|+||+|||||||+++|+.++|||+||+||+.|| +||+|||+
T Consensus         1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~g~~~evi~edDekL~~Lk~e~Geevy~   80 (132)
T PF03469_consen    1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVDGKEKEVIDEDDEKLQELKEEWGEEVYN   80 (132)
T ss_pred             CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccCCcccccccCchHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHhhhhcCCCCcccccccccccCccccHHHHHHHHHHHHHhhhccc
Q 006762          580 AVTTALKELNEYNPSGRYVIPDLWNFKEGRKATLKEVISYIVGNIRRLKRKR  631 (632)
Q Consensus       580 aV~~Al~E~neyN~sgry~v~elWN~ke~rkAtl~E~~~~~~~~~k~~k~kr  631 (632)
                      ||++||+|||||||||||||||||||+|||||||+|||+||++||+++||||
T Consensus        81 aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k~~krkr  132 (132)
T PF03469_consen   81 AVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWKTLKRKR  132 (132)
T ss_pred             HHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999998

The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT Back     alignment and domain information
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
4e8u_A172 Crystal Structure Of Arabidopsis Idn2 Xs Domain Alo 1e-25
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With A Small Segment Of Adjacent Coiled-Coil Region Length = 172 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 5/160 (3%)
Query: 118 VWPWMGIIVNI-VMETKDRGSFLDSGYWLKRFAV---FKPVEVRIFWNEENPTAQAVVKF 173
           V+PW GI+VNI   + +D  S  +SG  L+   +   F P  VR  WN    +  A+V+F
Sbjct: 10  VYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEF 69
Query: 174 NNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQ 233
           N DWNG      F+KA+  D  GK+ W+ +K+ P L +YGW ARADD      IGE LR+
Sbjct: 70  NKDWNGLHNGLLFDKAYTVDGHGKKDWL-KKDGPKLGLYGWIARADDYNGNNIIGENLRK 128
Query: 234 EGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQ 273
            G L+T++++ +E+A+ +  +V +L   ++ K +D+ E++
Sbjct: 129 TGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIE 168

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 1e-48
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-09
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 6e-07
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-05
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 8e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-04
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 3e-04
1f5n_A592 Interferon-induced guanylate-binding protein 1; GB 5e-04
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Length = 172 Back     alignment and structure
 Score =  167 bits (423), Expect = 1e-48
 Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 5/171 (2%)

Query: 111 PEQEDLYVWPWMGIIVNIVMETKDRGSFL-DSGYWLK---RFAVFKPVEVRIFWNEENPT 166
            + ++  V+PW GI+VNI       G    +SG  L+       F P  VR  WN    +
Sbjct: 3   CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHS 62

Query: 167 AQAVVKFNNDWNGFMQASDFEKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGP 226
             A+V+FN DWNG      F+KA+  D  GK+ W+ +   P L +YGW ARADD      
Sbjct: 63  GTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKD-GPKLGLYGWIARADDYNGNNI 121

Query: 227 IGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKNEDLSELQCKFN 277
           IGE LR+ G L+T++++ +E+A+ +  +V +L   ++ K +D+ E++   +
Sbjct: 122 IGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEELCS 172
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 100.0
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.23
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.01
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.75
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.5
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.34
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 91.82
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 88.42
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 87.5
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 86.86
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 86.66
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 86.54
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 86.2
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 85.56
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 84.37
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 83.17
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 83.15
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 82.93
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 82.88
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 82.67
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 81.47
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 80.99
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 80.79
2db1_A118 Heterogeneous nuclear ribonucleoprotein F; RRM dom 80.77
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 80.42
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 80.3
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1e-64  Score=485.72  Aligned_cols=166  Identities=35%  Similarity=0.698  Sum_probs=158.4

Q ss_pred             CCCCceeeecceEEEEeccc-cccCCccccCChhhHhh-h--cccCCceeeeeccCCCCcceEEEEeCCChhchhhHHHH
Q 006762          111 PEQEDLYVWPWMGIIVNIVM-ETKDRGSFLDSGYWLKR-F--AVFKPVEVRIFWNEENPTAQAVVKFNNDWNGFMQASDF  186 (632)
Q Consensus       111 ~~~de~iVWPwmgII~Ni~t-e~~dg~~~G~s~~~L~d-~--~~F~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~l  186 (632)
                      ++++++|||||||||+|||| +.+||+++|+|+++|++ |  ++|+|++|+||||++||+|+|||+|++||+||+||++|
T Consensus         3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f   82 (172)
T 4e8u_A            3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF   82 (172)
T ss_dssp             ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred             CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence            78899999999999999999 56799999999999999 8  99999999999999999999999999999999999999


Q ss_pred             HhhhhhcCCChhhhhhhcCCCCCceeeeecccCCCCCCCChhhhhhhccCCCCHHHHHHHhhhhHhHHHHHHHhHHHhhh
Q 006762          187 EKAFDADHQGKRHWIARKESPGLRIYGWFARADDNTSEGPIGEYLRQEGKLRTVSDIVQEDAQSKIHVVAHLASKIDMKN  266 (632)
Q Consensus       187 ek~Fe~~~~GRkdW~~~~~~~~~~LYGWvAradDy~~~g~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~kn  266 (632)
                      |+||+.+||||+||.+++++ +++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++||
T Consensus        83 ek~Fe~~~~GK~dW~~~~~~-~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn  161 (172)
T 4e8u_A           83 DKAYTVDGHGKKDWLKKDGP-KLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKK  161 (172)
T ss_dssp             HHHHHHTTCSHHHHTCSSSC-CCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHhhCCCC-CCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987666 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhh
Q 006762          267 EDLSELQCKFN  277 (632)
Q Consensus       267 k~l~elE~k~n  277 (632)
                      +||++||++||
T Consensus       162 ~~l~ele~k~~  172 (172)
T 4e8u_A          162 KDMKEIEELCS  172 (172)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhhC
Confidence            99999999997
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 94.24
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 92.39
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 90.25
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 88.76
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 87.98
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 86.07
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 84.97
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 84.71
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 84.14
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 84.03
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 83.99
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 81.47
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.032  Score=43.75  Aligned_cols=59  Identities=14%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             eEEEEeccccccCCccccCChhhHhh-hcccCCce-eeeeccCCCCcceEEEEeCCChhchhhHHHHHhh
Q 006762          122 MGIIVNIVMETKDRGSFLDSGYWLKR-FAVFKPVE-VRIFWNEENPTAQAVVKFNNDWNGFMQASDFEKA  189 (632)
Q Consensus       122 mgII~Ni~te~~dg~~~G~s~~~L~d-~~~F~p~k-v~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~lek~  189 (632)
                      ++.|-|+|.        ..+...|++ |+.|.++. |+...++.+++|+|.|+|. +-..-..|+.++++
T Consensus         2 tv~V~nlp~--------~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~-~~~~a~~Al~~~~~   62 (75)
T d2ghpa2           2 TVLVKNLPK--------SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFA-RYDGALAAITKTHK   62 (75)
T ss_dssp             EEEEEEECT--------TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEES-SHHHHHHHHTTTTC
T ss_pred             EEEEECCCC--------CCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEc-chHHhHHHHHhcCc
Confidence            578899975        457889999 99998765 6666789999999999995 46666777776554
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure