Citrus Sinensis ID: 006770

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL
cccccccccEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEEEEEcccccHHcccHHHHHHccHHHHHHHccccEEEEcccccccccccccccEEEEEEccccEEEEEEEEEEcccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEcccHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHccEEcccccHHHHHHccccccccHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHcc
ccccccccEEEEEccccEEEEEccccccccccccccccccccccEEEcccccccccccccccEEccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEccccccccccHHHHHcccHHHHHHcccEEEEEEcccccHHHHHcccEEEEEEEcccEEEEEEEEEEEccccEEEEEcccHccccccccccccccHHHHHHHHHHHHHHcccHccccccccccccEEEEEccHHHHHHHHHHHHHHcccccHHccEEEEEEEEHHHcccccHHHHHHccccHHHHcHcccccccccccHHHHHHHHHHccEEEEEcccHHHHHcccccccccHHHHHcccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHcc
MASIRSLSFMVETKADSYVVLFsknqyrpsssfsafrpkkspifaflnnsvsgfsfrsnksghllkVKHVkatgagfvedesgnepedsLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSdianseedevsyeerensfsdldftstsssnvvenqngiipsssgdhstaneapklqssaanrgpdaggkesenrlspekesididsskllkgtdtqstwsdelpsflsrtavisspkeerhekdldqvqqidsepiepkteeakppplaganVMNVILVAAecgpwsktgglgdvagALPKALARRGhrvmvvaphygnyaepqdtgirkryrvdRQDIEVAYFQAYIdgvdfvfldsplfrhlgnniygggrEDILKRMVLFCKAAieipwyvpcggvcygdgnlvFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNiahqgrgpvsdfvytdlpghyldlfklydpvggehFNIFAAGLKTADRVVTVSRGYSWELktaeggwglhniinevdwklsgivngidtkewspmydihltsdgytnycldtlhtgkpqcKAALQrefglpvrddvpvigfigrldhqkGVDLIAEAIpwmmgqdvqlshvghwqtrfgrdaeel
masirslsfmvETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATgagfvedesgnepEDSLQATIEKSKKVLAMQKQLLQQISErrklvssiksdianseedevsyEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQssaanrgpdaggkesenrlspekesididsskllkgtdtqstwsdelpsflsrtavisspkeerhekdldqvqqidsepiepkteeakppplAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVaphygnyaepqdtgirKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELktaeggwglhNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANseedevsyeerensfsdldftstsssnVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL
********FMVETKADSYVVLFSKN****************PIFAFLNNSVSGFSFRSNKSGHLLKVKHVKAT********************************************************************************************************************************************************************************************************GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRF*******
***********ETKADSYVV*******************KSPIFAFLNNSVSG***********************************SLQATIEKSKKVLAMQKQLLQQIS***********************************************************************************************************************************************************************VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVE**********LQATIEKSKKVLAMQKQLLQQISERRKLVSSIKS*******************SDLDFTSTSSSNVVENQNGIIPS****************************************IDIDSSKLLKGTDTQSTWSDELPSFLSRTAVIS*************VQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL
****RSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGA**********PEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDI**************************************************************************************************************************************************LAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query632 2.2.26 [Sep-21-2011]
Q43847 767 Granule-bound starch synt N/A no 0.931 0.767 0.596 0.0
Q9MAC8 792 Starch synthase 2, chloro yes no 0.882 0.704 0.606 0.0
Q43093 752 Granule-bound starch synt N/A no 0.916 0.769 0.606 0.0
Q7XE48 749 Soluble starch synthase 2 yes no 0.590 0.497 0.72 1e-166
P0C586 810 Soluble starch synthase 2 N/A no 0.552 0.430 0.762 1e-166
Q0DDE3 810 Soluble starch synthase 2 no no 0.552 0.430 0.759 1e-165
Q6Z2T8 694 Soluble starch synthase 2 no no 0.563 0.512 0.741 1e-163
Q9FNF2 652 Starch synthase 1, chloro no no 0.585 0.567 0.402 4e-76
Q43654 647 Starch synthase 1, chloro N/A no 0.528 0.516 0.455 1e-75
P93568 641 Soluble starch synthase 1 N/A no 0.571 0.563 0.425 7e-74
>sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3 Back     alignment and function desciption
 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/647 (59%), Positives = 454/647 (70%), Gaps = 58/647 (8%)

Query: 19  VVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFV 78
           ++L S NQ+ P+    A RPKK  +               +    + ++K VKATG    
Sbjct: 5   ILLHSGNQFHPNLPLLALRPKKLSLI------------HGSSREQMWRIKRVKATGENSG 52

Query: 79  EDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEER 138
           E  S +E  D+LQ TIEKSKKVLAMQ+ LLQQI+ERRK+VSSIKS +AN++    +Y+  
Sbjct: 53  EAASADESNDALQVTIEKSKKVLAMQQDLLQQIAERRKVVSSIKSSLANAKG---TYDGG 109

Query: 139 ENSFSDLDFT-----------STSSSNVVENQNGIIPSSSGD---------HSTANE-AP 177
             S SD+D             ST+++ + +      P+ S D            A+E AP
Sbjct: 110 SGSLSDVDIPDVDKDYNVTVPSTAATPITDVDKNTPPAISQDFVESKREIKRDLADERAP 169

Query: 178 KLQSSAANRGPDAGGKESENRL---------SPEKESIDIDSSKLL---KGTDTQSTWSD 225
            L  S+           S  R          S ++  +D++S K L    G   QS    
Sbjct: 170 PLSRSSITASSQISSTVSSKRTLNVPPETPKSSQETLLDVNSRKSLVDVPGKKIQSY--- 226

Query: 226 ELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAA 285
            +PS   R    +S  E+R+E       + + E  +P   + KPPPLAG NVMN+ILVA+
Sbjct: 227 -MPSL--RKESSASHVEQRNENLEGSSAEANEETEDPVNIDEKPPPLAGTNVMNIILVAS 283

Query: 286 ECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEV 345
           EC PWSKTGGLGDVAGALPKALARRGHRVMVVAP Y NY EPQD+G+RK Y+VD QD+EV
Sbjct: 284 ECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYDNYPEPQDSGVRKIYKVDGQDVEV 343

Query: 346 AYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCY 405
            YFQA+IDGVDFVF+DS +FRH+GNNIYGG R DILKRMVLFCKAAIE+PW+VPCGGVCY
Sbjct: 344 TYFQAFIDGVDFVFIDSHMFRHIGNNIYGGNRVDILKRMVLFCKAAIEVPWHVPCGGVCY 403

Query: 406 GDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLP 465
           GDGNLVFIANDWHTALLPVYLKAYYRDNG+M YTRS+LVIHNIAHQGRGP+ DF Y DLP
Sbjct: 404 GDGNLVFIANDWHTALLPVYLKAYYRDNGIMNYTRSVLVIHNIAHQGRGPLEDFSYVDLP 463

Query: 466 GHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDW 525
            HY+D FKLYDPVGGEHFNIFAAGLKTADRVVTVS GYSWELKT++GGWGLH IINE DW
Sbjct: 464 PHYMDPFKLYDPVGGEHFNIFAAGLKTADRVVTVSHGYSWELKTSQGGWGLHQIINENDW 523

Query: 526 KLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPV 585
           KL GIVNGIDTKEW+P  D+HL SDGY NY LDTL TGKPQCKAALQ+E GLPVRDDVP+
Sbjct: 524 KLQGIVNGIDTKEWNPELDVHLQSDGYMNYSLDTLQTGKPQCKAALQKELGLPVRDDVPL 583

Query: 586 IGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL 632
           IGFIGRLD QKGVDLIAEA+PWMMGQDVQL  +G  +    RD E++
Sbjct: 584 IGFIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTGR----RDLEQM 626
Accounts for only 10 to 15% of the total soluble starch synthase activity in tubers.
Solanum tuberosum (taxid: 4113)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 1
>sp|Q9MAC8|SSY2_ARATH Starch synthase 2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2 Back     alignment and function description
>sp|P0C586|SSY23_ORYSI Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1 Back     alignment and function description
>sp|Q0DDE3|SSY23_ORYSJ Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNF2|SSY1_ARATH Starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS1 PE=2 SV=1 Back     alignment and function description
>sp|Q43654|SSY1_WHEAT Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2 Back     alignment and function description
>sp|P93568|SSY1_SOLTU Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
225452843 772 PREDICTED: granule-bound starch synthase 0.971 0.795 0.666 0.0
296082929 788 unnamed protein product [Vitis vinifera] 0.965 0.774 0.640 0.0
157169069 751 starch synthase isoform II [Manihot escu 0.949 0.798 0.667 0.0
6467503 751 granule bound starch synthase II precurs 0.949 0.798 0.654 0.0
224141401 742 predicted protein [Populus trichocarpa] 0.935 0.796 0.667 0.0
255582123 754 starch synthase, putative [Ricinus commu 0.950 0.797 0.649 0.0
57015403 767 RecName: Full=Granule-bound starch synth 0.931 0.767 0.596 0.0
297828626 796 hypothetical protein ARALYDRAFT_477411 [ 0.960 0.762 0.594 0.0
449524102 816 PREDICTED: starch synthase 2, chloroplas 0.955 0.740 0.555 0.0
15232051 792 starch synthase 2 [Arabidopsis thaliana] 0.882 0.704 0.606 0.0
>gi|225452843|ref|XP_002278470.1| PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/627 (66%), Positives = 489/627 (77%), Gaps = 13/627 (2%)

Query: 1   MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFS----- 55
           MAS+  +SF+ E  A     ++S    RP  SF  +R + SP  A   +S+ G+S     
Sbjct: 1   MASVGCVSFVTERAAS----IWSGRDRRPRFSFPVYRLRMSPGCAISKDSIFGYSREDCV 56

Query: 56  -FRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISER 114
            F       +L  + V+A G G VE E G+  ED+  ATIEKSKKVLAMQ+ LLQQI+ER
Sbjct: 57  RFSLCSRRQVLGSRGVRARGEGSVEGEDGDRLEDAFDATIEKSKKVLAMQRDLLQQIAER 116

Query: 115 RKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTAN 174
           RKLVSSIKS I N E++EVSY+ R++SF ++D TST  S   E+ NG I S +  HS A+
Sbjct: 117 RKLVSSIKSSIINPEDNEVSYKGRDSSFPNMDLTSTGDSGGDEDYNGGILSGNYVHSNAD 176

Query: 175 EAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRT 234
           + P   SSA +RG   G KE    LS E  S+D+++ K LK T  ++ WSD LPSFLS++
Sbjct: 177 KVPAALSSATSRGFGEGEKELGKDLSLENPSLDLEAPKQLKDTSPKTVWSDPLPSFLSKS 236

Query: 235 AVISSPKEERHEKDLDQV--QQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSK 292
              +SPKEE+ E D  ++  +++++E      E+ KPPPLAG NVMN+ILVAAEC PWSK
Sbjct: 237 VETASPKEEKQE-DFRELSSEEVNNEAAVSMGEDVKPPPLAGTNVMNIILVAAECAPWSK 295

Query: 293 TGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYI 352
           TGGLGDVAGALPKALARRGHRVMVVAP YGNYAE Q+TG+RK+Y+VD QD+EV YFQAYI
Sbjct: 296 TGGLGDVAGALPKALARRGHRVMVVAPRYGNYAEAQETGVRKKYKVDGQDMEVTYFQAYI 355

Query: 353 DGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVF 412
           DGVDFVF+DS +FRH+  NIYGG R DILKRMVLFCKAAIE+PW+VPCGGVCYGDGNLVF
Sbjct: 356 DGVDFVFIDSHMFRHIEKNIYGGNRMDILKRMVLFCKAAIEVPWHVPCGGVCYGDGNLVF 415

Query: 413 IANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLF 472
           IANDWHTALLPVYLKAYYRDNGLMQYTRS LVIHNIAHQGRGPV DF YT LP HYLDLF
Sbjct: 416 IANDWHTALLPVYLKAYYRDNGLMQYTRSALVIHNIAHQGRGPVEDFSYTGLPEHYLDLF 475

Query: 473 KLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVN 532
           KLYDPVGGEHFNIFAAGLKTADRVVTVS GY+WELKT+EGGWGLH IINE DWKL GIVN
Sbjct: 476 KLYDPVGGEHFNIFAAGLKTADRVVTVSHGYAWELKTSEGGWGLHQIINENDWKLRGIVN 535

Query: 533 GIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGRL 592
           GID K+W+P  DI+L SDGY NY L+TLHTGKPQCKAALQ+E GLP+R+DVP+IGFIGRL
Sbjct: 536 GIDVKDWNPELDIYLESDGYVNYSLETLHTGKPQCKAALQKELGLPIREDVPLIGFIGRL 595

Query: 593 DHQKGVDLIAEAIPWMMGQDVQLSHVG 619
           DHQKGVDLIAEA+PWM+GQDVQL  +G
Sbjct: 596 DHQKGVDLIAEAVPWMVGQDVQLVMLG 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082929|emb|CBI22230.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|157169069|gb|ABV25894.1| starch synthase isoform II [Manihot esculenta] Back     alignment and taxonomy information
>gi|6467503|gb|AAF13168.1|AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] Back     alignment and taxonomy information
>gi|224141401|ref|XP_002324061.1| predicted protein [Populus trichocarpa] gi|222867063|gb|EEF04194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582123|ref|XP_002531856.1| starch synthase, putative [Ricinus communis] gi|223528506|gb|EEF30534.1| starch synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|57015403|sp|Q43847.3|SSY2_SOLTU RecName: Full=Granule-bound starch synthase 2, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase II; Short=GBSS-II; Short=SS II; Flags: Precursor gi|48927500|emb|CAA61241.2| soluble starch synthase II precursor [Solanum tuberosum] Back     alignment and taxonomy information
>gi|297828626|ref|XP_002882195.1| hypothetical protein ARALYDRAFT_477411 [Arabidopsis lyrata subsp. lyrata] gi|297328035|gb|EFH58454.1| hypothetical protein ARALYDRAFT_477411 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449524102|ref|XP_004169062.1| PREDICTED: starch synthase 2, chloroplastic/amyloplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15232051|ref|NP_186767.1| starch synthase 2 [Arabidopsis thaliana] gi|75264912|sp|Q9MAC8.1|SSY2_ARATH RecName: Full=Starch synthase 2, chloroplastic/amyloplastic; Short=AtSS2; AltName: Full=Soluble starch synthase II; Flags: Precursor gi|6714470|gb|AAF26156.1|AC008261_13 putative glycogen synthase [Arabidopsis thaliana] gi|15450775|gb|AAK96659.1| putative glycogen synthase [Arabidopsis thaliana] gi|27311899|gb|AAO00915.1| putative glycogen synthase [Arabidopsis thaliana] gi|332640100|gb|AEE73621.1| starch synthase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query632
TAIR|locus:2102102 792 SS2 "starch synthase 2" [Arabi 0.713 0.569 0.701 6.9e-173
TAIR|locus:2169749 652 SS1 "starch synthase 1" [Arabi 0.568 0.550 0.411 7.7e-71
UNIPROTKB|Q42968 609 WAXY "Granule-bound starch syn 0.544 0.564 0.412 1.7e-59
TAIR|locus:2037950 610 GBSS1 "granule bound starch sy 0.579 0.6 0.378 1.6e-54
TIGR_CMR|GSU_1023 501 GSU_1023 "glycogen synthase" [ 0.514 0.648 0.354 1e-45
TIGR_CMR|GSU_3257 484 GSU_3257 "glycogen synthase" [ 0.514 0.671 0.328 1.7e-38
TIGR_CMR|BA_5120 476 BA_5120 "glycogen synthase" [B 0.518 0.689 0.312 1.2e-36
UNIPROTKB|Q9KRB6 484 glgA "Glycogen synthase" [Vibr 0.515 0.673 0.309 4.8e-29
TIGR_CMR|VC_1726 484 VC_1726 "glycogen synthase" [V 0.515 0.673 0.309 4.8e-29
UNIPROTKB|P0A6U8 477 glgA [Escherichia coli K-12 (t 0.509 0.675 0.298 1.1e-27
TAIR|locus:2102102 SS2 "starch synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
 Identities = 320/456 (70%), Positives = 357/456 (78%)

Query:   164 PSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTW 223
             P    D +T N  P   SS      D   K S    SPEK S  + S      +   + W
Sbjct:   192 PQKPSDVAT-NGKP--WSSVVASSVDPPYKPSSVMTSPEKTSDPVTSPGKPSKSRAGAFW 248

Query:   224 SDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILV 283
             SD LPS+L++    S+ K E++ +    V    SE  EP  +E KPPPLAGANVMNVILV
Sbjct:   249 SDPLPSYLTKAPQTSTMKTEKYVEKTPDVAS--SETNEPGKDEEKPPPLAGANVMNVILV 306

Query:   284 AAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDI 343
             AAEC P+SKTGGLGDVAGALPK+LARRGHRVMVV P Y  YAE +D G+RKRY+V  QD+
Sbjct:   307 AAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRYAEYAEAKDLGVRKRYKVAGQDM 366

Query:   344 EVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGV 403
             EV YF A+IDGVDFVF+DSP FRHL NNIYGG R DILKRMVLFCKAA+E+PWYVPCGGV
Sbjct:   367 EVMYFHAFIDGVDFVFIDSPEFRHLSNNIYGGNRLDILKRMVLFCKAAVEVPWYVPCGGV 426

Query:   404 CYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTD 463
             CYGDGNL FIANDWHTALLPVYLKAYYRD+G+M+YTRS+LVIHNIAHQGRGPV DF Y D
Sbjct:   427 CYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFSYVD 486

Query:   464 LPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEV 523
             LP HYLD FKLYDPVGGEHFNIFAAGLK ADRV+TVS GYSWE+KT EGGWGLHNIINE 
Sbjct:   487 LPSHYLDSFKLYDPVGGEHFNIFAAGLKAADRVLTVSHGYSWEVKTLEGGWGLHNIINEN 546

Query:   524 DWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDV 583
             DWK  GIVNGIDT+EW+P +D +L SD YTNY L+ LH GKPQCKAALQ+E GLPVR DV
Sbjct:   547 DWKFRGIVNGIDTQEWNPEFDTYLHSDDYTNYSLENLHIGKPQCKAALQKELGLPVRPDV 606

Query:   584 PVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 619
             P+IGFIGRLDHQKGVDLIAEA+PWMM QDVQL  +G
Sbjct:   607 PLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVMLG 642
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0009011 "starch synthase activity" evidence=IMP
GO:0010021 "amylopectin biosynthetic process" evidence=IMP
GO:0001666 "response to hypoxia" evidence=RCA
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
TAIR|locus:2169749 SS1 "starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q42968 WAXY "Granule-bound starch synthase 1, chloroplastic/amyloplastic" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2037950 GBSS1 "granule bound starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1023 GSU_1023 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5120 BA_5120 "glycogen synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRB6 glgA "Glycogen synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1726 VC_1726 "glycogen synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6U8 glgA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XE48SSY21_ORYSJ2, ., 4, ., 1, ., 2, 10.720.59010.4979yesno
Q9MAC8SSY2_ARATH2, ., 4, ., 1, ., 2, 10.60690.88290.7045yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.4.1.210.914
3rd Layer2.4.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
TIGR02095 473 TIGR02095, glgA, glycogen/starch synthase, ADP-glu 1e-128
cd03791 476 cd03791, GT1_Glycogen_synthase_DULL1_like, This fa 1e-121
PRK00654 466 PRK00654, glgA, glycogen synthase; Provisional 6e-96
COG0297 487 COG0297, GlgA, Glycogen synthase [Carbohydrate tra 2e-78
pfam08323234 pfam08323, Glyco_transf_5, Starch synthase catalyt 6e-72
PRK14099 485 PRK14099, PRK14099, glycogen synthase; Provisional 4e-43
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 3e-33
PRK14098 489 PRK14098, PRK14098, glycogen synthase; Provisional 2e-30
PLN02316 1036 PLN02316, PLN02316, synthase/transferase 9e-24
cd03801 374 cd03801, GT1_YqgM_like, This family is most closel 3e-10
cd03798 377 cd03798, GT1_wlbH_like, This family is most closel 1e-04
cd03807 365 cd03807, GT1_WbnK_like, This family is most closel 0.003
COG0438 381 COG0438, RfaG, Glycosyltransferase [Cell envelope 0.003
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type Back     alignment and domain information 
 Score =  385 bits (990), Expect = e-128
 Identities = 137/342 (40%), Positives = 179/342 (52%), Gaps = 23/342 (6%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ----DTGIR 333
           M V+ VAAE  P++KTGGL DV GALPKALA  GH V V+ P YG   +           
Sbjct: 1   MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVEL 60

Query: 334 KRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREDILKRMVLFCKAAIE 393
               V  + + V  F+  ++GV   F+D+P        IYG    D  +R   F +AA E
Sbjct: 61  VDLSVGPRTLYVKVFEGVVEGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAE 120

Query: 394 IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGR 453
           +       G+ +     V  A+DWHTAL+P  LKA YR N      +++  IHN+A+QG 
Sbjct: 121 LLS-----GLGWQPD--VVHAHDWHTALVPALLKAVYRPN----PIKTVFTIHNLAYQGV 169

Query: 454 GPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGG 513
            P  DF    LP  Y  +  L         N    G+  ADRV TVS  Y+ E+ T E G
Sbjct: 170 FPADDFSELGLPPEYFHMEGLEFYG---RVNFLKGGIVYADRVTTVSPTYAREILTPEFG 226

Query: 514 WGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQR 573
           +GL  ++     KL GI+NGIDT+ W+P  D +L +    NY  D L  GK + K ALQ 
Sbjct: 227 YGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKA----NYSADDL-AGKAENKEALQE 281

Query: 574 EFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQL 615
           E GLPV DDVP+ G I RL  QKGVDL+  A+P ++    QL
Sbjct: 282 ELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQL 323

This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 473
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|234809 PRK00654, glgA, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain Back     alignment and domain information
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|172588 PRK14098, PRK14098, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase Back     alignment and domain information
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 632
PLN02939 977 transferase, transferring glycosyl groups 100.0
PRK14098 489 glycogen synthase; Provisional 100.0
PRK14099 485 glycogen synthase; Provisional 100.0
TIGR02095 473 glgA glycogen/starch synthases, ADP-glucose type. 100.0
PRK00654 466 glgA glycogen synthase; Provisional 100.0
PLN02316 1036 synthase/transferase 100.0
COG0297 487 GlgA Glycogen synthase [Carbohydrate transport and 100.0
cd03791 476 GT1_Glycogen_synthase_DULL1_like This family is mo 100.0
PF08323245 Glyco_transf_5: Starch synthase catalytic domain; 100.0
TIGR02094 601 more_P_ylases alpha-glucan phosphorylases. This fa 99.97
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 99.93
PRK10307 412 putative glycosyl transferase; Provisional 99.91
TIGR03449 405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 99.87
TIGR02149 388 glgA_Coryne glycogen synthase, Corynebacterium fam 99.87
TIGR02472 439 sucr_P_syn_N sucrose-phosphate synthase, putative, 99.87
cd03796 398 GT1_PIG-A_like This family is most closely related 99.86
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 99.85
cd04962 371 GT1_like_5 This family is most closely related to 99.84
TIGR02470 784 sucr_synth sucrose synthase. This model represents 99.83
TIGR02468 1050 sucrsPsyn_pln sucrose phosphate synthase/possible 99.82
PLN02846 462 digalactosyldiacylglycerol synthase 99.79
KOG1111 426 consensus N-acetylglucosaminyltransferase complex, 99.79
cd03800 398 GT1_Sucrose_synthase This family is most closely r 99.78
cd03819 355 GT1_WavL_like This family is most closely related 99.77
cd04955 363 GT1_like_6 This family is most closely related to 99.77
cd03812 358 GT1_CapH_like This family is most closely related 99.77
cd04951 360 GT1_WbdM_like This family is most closely related 99.77
cd03805 392 GT1_ALG2_like This family is most closely related 99.76
cd03802 335 GT1_AviGT4_like This family is most closely relate 99.76
PRK15484 380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 99.75
TIGR03088 374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 99.74
cd03818 396 GT1_ExpC_like This family is most closely related 99.74
cd03816 415 GT1_ALG1_like This family is most closely related 99.74
PLN00142 815 sucrose synthase 99.74
PRK15427 406 colanic acid biosynthesis glycosyltransferase WcaL 99.73
PRK10125 405 putative glycosyl transferase; Provisional 99.73
cd03795 357 GT1_like_4 This family is most closely related to 99.72
cd03793 590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 99.72
cd03807 365 GT1_WbnK_like This family is most closely related 99.71
cd03821 375 GT1_Bme6_like This family is most closely related 99.71
cd03794 394 GT1_wbuB_like This family is most closely related 99.71
cd03817 374 GT1_UGDG_like This family is most closely related 99.7
cd03792 372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 99.7
cd03823 359 GT1_ExpE7_like This family is most closely related 99.68
PRK09922 359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 99.67
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.66
cd03799 355 GT1_amsK_like This is a family of GT1 glycosyltran 99.65
cd03814 364 GT1_like_2 This family is most closely related to 99.65
cd03801 374 GT1_YqgM_like This family is most closely related 99.64
cd05844 367 GT1_like_7 Glycosyltransferases catalyze the trans 99.64
cd03822 366 GT1_ecORF704_like This family is most closely rela 99.63
cd03809 365 GT1_mtfB_like This family is most closely related 99.62
cd03825 365 GT1_wcfI_like This family is most closely related 99.61
PRK00726 357 murG undecaprenyldiphospho-muramoylpentapeptide be 99.61
cd03811 353 GT1_WabH_like This family is most closely related 99.6
cd03820 348 GT1_amsD_like This family is most closely related 99.6
cd03798 377 GT1_wlbH_like This family is most closely related 99.59
PLN02275371 transferase, transferring glycosyl groups 99.58
cd03808 359 GT1_cap1E_like This family is most closely related 99.56
cd03806 419 GT1_ALG11_like This family is most closely related 99.53
PF13579160 Glyco_trans_4_4: Glycosyl transferase 4-like domai 99.52
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 99.52
PRK15490 578 Vi polysaccharide biosynthesis protein TviE; Provi 99.51
cd03785 350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 99.5
TIGR01133 348 murG undecaprenyldiphospho-muramoylpentapeptide be 99.48
TIGR03087 397 stp1 sugar transferase, PEP-CTERM/EpsH1 system ass 99.46
cd03813 475 GT1_like_3 This family is most closely related to 99.44
PLN02501 794 digalactosyldiacylglycerol synthase 99.41
PLN02949 463 transferase, transferring glycosyl groups 99.28
cd03804 351 GT1_wbaZ_like This family is most closely related 99.27
cd03788 460 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a 99.2
PRK13609 380 diacylglycerol glucosyltransferase; Provisional 99.09
PF05693 633 Glycogen_syn: Glycogen synthase; InterPro: IPR0086 99.07
TIGR02400 456 trehalose_OtsA alpha,alpha-trehalose-phosphate syn 99.07
PF09314185 DUF1972: Domain of unknown function (DUF1972); Int 99.07
cd04946 407 GT1_AmsK_like This family is most closely related 99.0
TIGR02918 500 accessory Sec system glycosylation protein GtfA. M 98.95
PRK05749 425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 98.94
PHA01630 331 putative group 1 glycosyl transferase 98.91
PLN02605 382 monogalactosyldiacylglycerol synthase 98.85
cd04949 372 GT1_gtfA_like This family is most closely related 98.77
PRK14501 726 putative bifunctional trehalose-6-phosphate syntha 98.74
PLN03063 797 alpha,alpha-trehalose-phosphate synthase (UDP-form 98.74
cd03786 363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 98.71
PHA01633 335 putative glycosyl transferase group 1 98.7
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 98.69
TIGR02398 487 gluc_glyc_Psyn glucosylglycerol-phosphate synthase 98.69
cd04950 373 GT1_like_1 Glycosyltransferases catalyze the trans 98.61
PRK13608 391 diacylglycerol glucosyltransferase; Provisional 98.6
PRK00025 380 lpxB lipid-A-disaccharide synthase; Reviewed 98.56
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 98.51
TIGR00236 365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 98.37
TIGR00215 385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 98.31
PRK09814 333 beta-1,6-galactofuranosyltransferase; Provisional 97.99
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 97.96
cd04300 797 GT1_Glycogen_Phosphorylase This is a family of oli 97.85
PLN03064 934 alpha,alpha-trehalose-phosphate synthase (UDP-form 97.83
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 97.79
TIGR02093 794 P_ylase glycogen/starch/alpha-glucan phosphorylase 97.63
PRK14986 815 glycogen phosphorylase; Provisional 97.58
PRK14985 798 maltodextrin phosphorylase; Provisional 97.27
KOG2941 444 consensus Beta-1,4-mannosyltransferase [Posttransl 97.18
PF12000171 Glyco_trans_4_3: Gkycosyl transferase family 4 gro 97.07
PF00534 172 Glycos_transf_1: Glycosyl transferases group 1; In 97.06
PF00862550 Sucrose_synth: Sucrose synthase; InterPro: IPR0003 96.88
PRK10117 474 trehalose-6-phosphate synthase; Provisional 96.83
KOG3742 692 consensus Glycogen synthase [Carbohydrate transpor 96.79
COG0380 486 OtsA Trehalose-6-phosphate synthase [Carbohydrate 96.62
PLN02205 854 alpha,alpha-trehalose-phosphate synthase [UDP-form 96.56
PF00343 713 Phosphorylase: Carbohydrate phosphorylase; InterPr 96.31
COG0438 381 RfaG Glycosyltransferase [Cell envelope biogenesis 96.3
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 96.3
PF00982 474 Glyco_transf_20: Glycosyltransferase family 20; In 96.29
PF11997268 DUF3492: Domain of unknown function (DUF3492); Int 96.11
KOG1387 465 consensus Glycosyltransferase [Cell wall/membrane/ 96.1
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 95.96
KOG0853 495 consensus Glycosyltransferase [Cell wall/membrane/ 95.66
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 94.64
COG1817346 Uncharacterized protein conserved in archaea [Func 90.75
PF0828890 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IP 88.96
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 85.81
TIGR03568365 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, 82.75
TIGR00661321 MJ1255 conserved hypothetical protein. This model 82.66
PF01975196 SurE: Survival protein SurE; InterPro: IPR002828 T 80.83
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information 
Probab=100.00  E-value=1.1e-50  Score=468.48  Aligned_cols=337  Identities=31%  Similarity=0.478  Sum_probs=273.6

Q ss_pred             CCCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCccc-----ceeeeecCccceEEEEE
Q 006770          275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGI-----RKRYRVDRQDIEVAYFQ  349 (632)
Q Consensus       275 ~~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~-----r~~~~i~g~~~~v~v~~  349 (632)
                      +++|||+||++|++||+++||+|++++.|+++|+++||+|.||+|.|+........+.     .....+.|..+.+++|.
T Consensus       479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~  558 (977)
T PLN02939        479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT  558 (977)
T ss_pred             CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence            5679999999999999999999999999999999999999999999986531100011     11123455555678899


Q ss_pred             EEECCeEEEEecCc---cccccCCCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHH
Q 006770          350 AYIDGVDFVFLDSP---LFRHLGNNIYGGGREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYL  426 (632)
Q Consensus       350 ~~~dGV~v~~I~~p---~~~~~~~~iY~~~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l  426 (632)
                      ...+||++|||+++   .||.+ +.+|+.  .|+..||.+||+|+++++...       .++||||||||||++++|.++
T Consensus       559 ~~~~GV~vyfId~~~~~~fF~R-~~iYg~--~Dn~~RF~~FsrAaLe~~~~~-------~~~PDIIH~HDW~TaLV~pll  628 (977)
T PLN02939        559 GTVEGLPVYFIEPQHPSKFFWR-AQYYGE--HDDFKRFSYFSRAALELLYQS-------GKKPDIIHCHDWQTAFVAPLY  628 (977)
T ss_pred             EEECCeeEEEEecCCchhccCC-CCCCCC--ccHHHHHHHHHHHHHHHHHhc-------CCCCCEEEECCccHHHHHHHH
Confidence            99999999999853   26664 468873  689999999999999999764       479999999999999985555


Q ss_pred             HHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccc-cccccCCCCchhHHHHHHHhhcCCeEEEechhHHH
Q 006770          427 KAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLD-LFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSW  505 (632)
Q Consensus       427 ~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~-~l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~  505 (632)
                      +..+...+ ..++|+|+||||+.|||.+|...+..+|++..++. .-.+.+. ....+|+++.++.+||+|+|||+.|++
T Consensus       629 ~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~-~~~~iN~LK~GIv~AD~VtTVSptYA~  706 (977)
T PLN02939        629 WDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN-AHGRINVVKGAIVYSNIVTTVSPTYAQ  706 (977)
T ss_pred             HHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc-cCCchHHHHHHHHhCCeeEeeeHHHHH
Confidence            44444333 36789999999999999998776666788765432 1111000 113689999999999999999999999


Q ss_pred             HHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCC-CCCc
Q 006770          506 ELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVR-DDVP  584 (632)
Q Consensus       506 el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~-~d~p  584 (632)
                      ++.+ ++|.||+++++.+..++.+|+||||++.|+|..+.+++    .+|+.+++ .+|..+|.++++++|++.+ ++.|
T Consensus       707 EI~t-e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~----~~Ys~~dl-~GK~~nK~aLRkelGL~~~d~d~p  780 (977)
T PLN02939        707 EVRS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLK----VQYNANDL-QGKAANKAALRKQLGLSSADASQP  780 (977)
T ss_pred             HHHH-HhccchHHHhccccCCceEEecceehhhcCCccccccc----cccChhhh-hhhhhhhHHHHHHhCCCcccccce
Confidence            9988 78899999998899999999999999999998887776    68999887 4999999999999999853 4679


Q ss_pred             EEEEEcCCccccCHHHHHHHHhhccCCCcEEEEEecCh-hhHHHHH
Q 006770          585 VIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQ-TRFGRDA  629 (632)
Q Consensus       585 vIlfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~-~~le~~l  629 (632)
                      +|+|||||+++||+++|++|+..+...+++|||+|+|+ ..++..+
T Consensus       781 LIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL  826 (977)
T PLN02939        781 LVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREF  826 (977)
T ss_pred             EEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHH
Confidence            99999999999999999999998877789999999996 3444443

>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02470 sucr_synth sucrose synthase Back     alignment and domain information
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism] Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN00142 sucrose synthase Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02275 transferase, transferring glycosyl groups Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02501 digalactosyldiacylglycerol synthase Back     alignment and domain information
>PLN02949 transferase, transferring glycosyl groups Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3 Back     alignment and domain information
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases Back     alignment and domain information
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02918 accessory Sec system glycosylation protein GtfA Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>PHA01630 putative group 1 glycosyl transferase Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding Back     alignment and domain information
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional Back     alignment and domain information
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>PHA01633 putative glycosyl transferase group 1 Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase Back     alignment and domain information
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases Back     alignment and domain information
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2 Back     alignment and domain information
>PRK10117 trehalose-6-phosphate synthase; Provisional Back     alignment and domain information
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming] Back     alignment and domain information
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>COG1817 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
3vue_A 536 Crystal Structure Of Rice Granule Bound Starch Synt 6e-58
1rzu_A 485 Crystal Structure Of The Glycogen Synthase From A. 3e-30
3d1j_A 477 Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408 1e-29
2qzs_A 485 Crystal Structure Of Wild-Type E.Coli Gs In Complex 2e-29
3cop_A 485 Crystal Structure Of E.Coli Gs Mutant E377a In Comp 2e-29
1rzv_A 485 Crystal Structure Of The Glycogen Synthase From Agr 6e-28
2bis_A 440 Structure Of Glycogen Synthase From Pyrococcus Abys 5e-12
3fro_A 439 Crystal Structure Of Pyrococcus Abyssi Glycogen Syn 5e-12
3l01_A 428 Crystal Structure Of Monomeric Glycogen Synthase Fr 5e-12
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536 Back     alignment and structure 
Iteration: 1

 Score =  221 bits (564), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 196/366 (53%), Gaps = 24/366 (6%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V AE  PWSKTGGLGDV G LP A+A  GHRVMV++P Y  Y +  DT +    +
Sbjct: 10  MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRH-----LGNNIYGGGR----EDILKRMVLFC 388
           V  +   V +F  Y  GVD VF+D P F        G  IYG       +D   R  L C
Sbjct: 70  VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 389 KAAIEIPWYVPCGGVCYGDG----NLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLV 444
           +AA+E P  +      Y  G    ++VF+ NDWHT  L  YLK  Y+ NG+ +  +    
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 445 IHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYD----PVGGEHFNIFAAGLKTADRVVTVS 500
           IHNI++QGR    D+   +L   +   F   D    PV G   N   AG+  ADRV+TVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 501 RGYSWELKTAEG-GWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDT 559
             Y+ EL +    G  L NI+      ++GIVNG+D  EW P  D ++T+     Y   T
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTG--ITGIVNGMDVSEWDPSKDKYITA----KYDATT 303
Query: 560 LHTGKPQCKAALQREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVG 619
               K   K ALQ E GLPV   +P+I FIGRL+ QKG D++A AIP +M +DVQ+  +G
Sbjct: 304 AIEAKALNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLG 363
Query: 620 HWQTRF 625
             + +F
Sbjct: 364 TGKKKF 369
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp Length = 485 Back     alignment and structure
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s) Length = 477 Back     alignment and structure
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) Length = 485 Back     alignment and structure
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso Length = 485 Back     alignment and structure
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) Length = 485 Back     alignment and structure
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi Length = 440 Back     alignment and structure
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase With Open And Closed Conformations Length = 439 Back     alignment and structure
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From Pyrococcus Abyssi Length = 428 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query632
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 1e-140
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 1e-139
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 1e-109
2bfw_A 200 GLGA glycogen synthase; glycosyltransferase family 2e-25
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 6e-12
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 2e-09
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 3e-09
2jjm_A 394 Glycosyl transferase, group 1 family protein; anth 1e-08
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 1e-06
2x6q_A 416 Trehalose-synthase TRET; biosynthetic protein; 2.2 6e-05
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 1e-04
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Back     alignment and structure
 Score =  415 bits (1069), Expect = e-140
 Identities = 102/344 (29%), Positives = 151/344 (43%), Gaps = 26/344 (7%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           M V+ V +E  P  KTGGL DV GALP A    G    V+ P + +      T  +   R
Sbjct: 1   MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRR-GVTDAQVVSR 59

Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGR----EDILKRMVLFCKAAIE 393
            D     +     + +GV    +D+P       + Y         D + R  L      E
Sbjct: 60  RDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAE 119

Query: 394 IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGR 453
           +   +        D   V  A+DWH  L P YL A  R        +S+  +HN+A+QG 
Sbjct: 120 MASGLDPFWRP--D---VVHAHDWHAGLAPAYLAARGRP------AKSVFTVHNLAYQGM 168

Query: 454 GPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGG 513
                     LP  +   F ++        +   AGL  AD +  VS  Y+ E+   +  
Sbjct: 169 FYAHHMNDIQLPWSF---FNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFA 225

Query: 514 WGLHNIINE--VDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAAL 571
           +G+  ++ +   + +LSG++NG+D K WSP  D+ L     + Y  DTL   K + K  L
Sbjct: 226 YGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLL----ASRYTRDTL-EDKAENKRQL 280

Query: 572 QREFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQL 615
           Q   GL V D VP+   + RL  QKG+DL+ EA+P ++ Q  QL
Sbjct: 281 QIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQL 324
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439 Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Length = 200 Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Length = 725 Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Length = 438 Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Length = 394 Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Length = 394 Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Length = 499 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Length = 374 Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Length = 416 Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Length = 816 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 100.0
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 99.98
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 99.97
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 99.97
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 99.92
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 99.89
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 99.88
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 99.85
2jjm_A 394 Glycosyl transferase, group 1 family protein; anth 99.85
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 99.85
3s28_A 816 Sucrose synthase 1; glycosyltransferase, sucrose m 99.84
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 99.82
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 99.81
2gek_A 406 Phosphatidylinositol mannosyltransferase (PIMA); G 99.78
2iuy_A 342 Avigt4, glycosyltransferase; antibiotics, family G 99.78
2x6q_A 416 Trehalose-synthase TRET; biosynthetic protein; 2.2 99.77
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 99.73
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 99.71
1f0k_A 364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 99.59
2hy7_A 406 Glucuronosyltransferase GUMK; glycosyltransferases 99.53
2x0d_A 413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 99.47
3beo_A 375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 99.3
1vgv_A 384 UDP-N-acetylglucosamine 2-epimerase; structural ge 99.27
1uqt_A 482 Alpha, alpha-trehalose-phosphate synthase; glycosy 99.27
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.27
1v4v_A 376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 99.02
3t5t_A 496 Putative glycosyltransferase; GTB fold, pseudoglyc 98.94
2bfw_A 200 GLGA glycogen synthase; glycosyltransferase family 98.62
2xci_A 374 KDO-transferase, 3-deoxy-D-manno-2-octulosonic aci 98.52
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 98.32
3ot5_A 403 UDP-N-acetylglucosamine 2-epimerase; structural ge 98.13
3s2u_A 365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 98.0
3dzc_A 396 UDP-N-acetylglucosamine 2-epimerase; structural ge 97.97
3rhz_A 339 GTF3, nucleotide sugar synthetase-like protein; gl 97.9
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 97.81
2iyf_A430 OLED, oleandomycin glycosyltransferase; antibiotic 97.79
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 97.65
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 97.61
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 97.57
4hwg_A 385 UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc 97.41
2f9f_A 177 First mannosyl transferase (WBAZ-1); alpha-beta pr 97.01
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 96.94
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 96.14
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 95.67
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 92.46
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 89.07
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 86.04
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 83.8
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-48  Score=434.62  Aligned_cols=350  Identities=41%  Similarity=0.638  Sum_probs=271.0

Q ss_pred             CCcEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCe
Q 006770          276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGV  355 (632)
Q Consensus       276 ~~MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV  355 (632)
                      ..||||||++|++|+.++||+|+++.+|+++|+++||+|+||+|.|+...+..+......+.+.+....+++++...+||
T Consensus         8 ~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv   87 (536)
T 3vue_A            8 HHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRGV   87 (536)
T ss_dssp             CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETTE
T ss_pred             CCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECCc
Confidence            56999999999999999999999999999999999999999999998765432222223344556666678888889999


Q ss_pred             EEEEecCccccccC-----CCCCCC----ChhhHHHHHHHHHHHHHHhhhhcCCCCCC----CCCCccEEEEcCcchhHH
Q 006770          356 DFVFLDSPLFRHLG-----NNIYGG----GREDILKRMVLFCKAAIEIPWYVPCGGVC----YGDGNLVFIANDWHTALL  422 (632)
Q Consensus       356 ~v~~I~~p~~~~~~-----~~iY~~----~~~d~~~r~~lf~kav~e~i~~l~~~~~~----~~~~pDIIHaHdw~sall  422 (632)
                      ++|+|++|.|+.+.     ..+|+.    .|.|+..||.+|+++++++++.+..+...    ....+||+||||||++++
T Consensus        88 ~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddIiH~hDW~t~l~  167 (536)
T 3vue_A           88 DRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPL  167 (536)
T ss_dssp             EEEEEECTTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEEEEEESGGGSTH
T ss_pred             eEEEecChhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEEEEECcchHHHH
Confidence            99999999887542     346753    36788999999999999987765322110    123578999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCeEEEEEeCCcccCCCCCCccccCCCCccccccc---ccc-CCCCchhHHHHHHHhhcCCeEEE
Q 006770          423 PVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLF---KLY-DPVGGEHFNIFAAGLKTADRVVT  498 (632)
Q Consensus       423 p~~l~~~~~~~~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~l---~~~-~p~~g~~~~i~r~~l~~AD~VIt  498 (632)
                      |++++..+...+...++|+|+|+||+.++|.++...+...+++.......   ..+ .+.....+++++.++.+||+|+|
T Consensus       168 ~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k~~i~~ad~v~t  247 (536)
T 3vue_A          168 ASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLT  247 (536)
T ss_dssp             HHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHHHHHHHCSEEEE
T ss_pred             HHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHHHHHHhccEEEE
Confidence            99998876655556789999999999999998887766666655432211   111 11223457899999999999999


Q ss_pred             echhHHHHHHHhhcCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCC
Q 006770          499 VSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLP  578 (632)
Q Consensus       499 VS~~~a~el~~~~~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~  578 (632)
                      ||+.+++++.+. +++|+...+..+..++.+|+||||++.|+|..+..++    .+|...+...+|..+|..+++++||+
T Consensus       248 VS~~~a~ei~~~-~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~----~~~~~~~~~~~K~~~k~~l~~~~gl~  322 (536)
T 3vue_A          248 VSPYYAEELISG-IARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIT----AKYDATTAIEAKALNKEALQAEAGLP  322 (536)
T ss_dssp             SCHHHHHHHHTT-CCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSS----CCCCTTTHHHHHHHHHHHHHHHTTSC
T ss_pred             cCHHHhhhhhcc-cccccccccccccCCeEEEECCcchhhcCCCCccccc----cccchhhhhhhhHHHHHHHHHhcCCC
Confidence            999999999864 3433332223356799999999999999998877665    45555544457888999999999999


Q ss_pred             CCCCCcEEEEEcCCccccCHHHHHHHHhhccCCCcEEEEEecChhhHHHHHH
Q 006770          579 VRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAE  630 (632)
Q Consensus       579 ~~~d~pvIlfVGRL~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~~le~~lk  630 (632)
                      .+++.|+|+|+|||+++||+++|++|++.+.+.+.+|+|+|.|+..++..++
T Consensus       323 ~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~  374 (536)
T 3vue_A          323 VDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLK  374 (536)
T ss_dssp             CCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHH
T ss_pred             CCCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHH
Confidence            9899999999999999999999999999998889999999999876666554
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A* Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 632
d1rzua_ 477 c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte 3e-71
d2bisa1 437 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro 1e-32
d2bfwa1 196 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Py 1e-07
d2f9fa1 166 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ 0.002
d1o5ia_234 c.2.1.2 (A:) beta-keto acyl carrier protein reduct 0.003
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  236 bits (601), Expect = 3e-71
 Identities = 104/359 (28%), Positives = 144/359 (40%), Gaps = 23/359 (6%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V++E  P  KTGGL DV GALP AL   G R   + P Y          ++    
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIY----GGGREDILKRMVLFCKAAIE 393
            D    +    +   + +D + LD+P +       Y    G    D  KR      A   
Sbjct: 61  TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLA--- 117

Query: 394 IPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGR 453
                   GV  G    +  A+DW  A+ PVY++             SLL IHNIA QG+
Sbjct: 118 --AARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAET-----PEIPSLLTIHNIAFQGQ 170

Query: 454 GPVSDFVYTDLPGHYLDLFKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGG 513
              + F    LP H    F +         +    GL+TA  + TVS  Y+ E+ TAE G
Sbjct: 171 FGANIFSKLALPAHA---FGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFG 227

Query: 514 WGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQR 573
            GL  +I      L GIVNGID   W+P  D         +         +   K A+  
Sbjct: 228 MGLEGVIGSRAHVLHGIVNGIDADVWNPATDHL-----IHDNYSAANLKNRALNKKAVAE 282

Query: 574 EFGLPVRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAEEL 632
            F +   D  P+   I RL  QKG+DL+AEA+  ++    +L  +G             
Sbjct: 283 HFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAA 340
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 196 Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Length = 166 Back     information, alignment and structure
>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query632
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 100.0
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 99.96
d2iw1a1 370 Lipopolysaccharide core biosynthesis protein RfaG 99.68
d1uqta_ 456 Trehalose-6-phosphate synthase, OtsA {Escherichia 98.81
d2bfwa1 196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 98.81
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 98.51
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 98.33
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 97.47
d2f9fa1 166 First mannosyl transferase WbaZ {Archaeoglobus ful 96.74
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 95.9
d1pn3a_391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 93.7
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 87.89
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 87.83
d1jaya_212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 86.34
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=2.9e-39  Score=350.46  Aligned_cols=332  Identities=32%  Similarity=0.437  Sum_probs=245.7

Q ss_pred             cEEEEEecccCCCCCCCcHHHHHHHHHHHHHHCCCeEEEEccCCCCCCCCCCcccceeeeecCccceEEEEEEEECCeEE
Q 006770          278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDF  357 (632)
Q Consensus       278 MKIL~It~e~~P~~~~GGlg~~v~~LakaLakrGheV~VVtP~y~~~~~~~dig~r~~~~i~g~~~~v~v~~~~~dGV~v  357 (632)
                      |||+||++||+|+.++||+|+++.+|+++|+++||+|+||+|.|+.........++..-..+.....+.+++...+|+++
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEFTDLLGEKADLLEVQHERLDL   80 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEEEEEESCSSSCCEEEEEEEETTEEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceEEEEEeccCCceEEEEEEEECCeeE
Confidence            99999999999998899999999999999999999999999998753221111111100111222345667778899999


Q ss_pred             EEecCccccccCCCCCCC----ChhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCCccEEEEcCcchhHHHHHHHHHhhhc
Q 006770          358 VFLDSPLFRHLGNNIYGG----GREDILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDN  433 (632)
Q Consensus       358 ~~I~~p~~~~~~~~iY~~----~~~d~~~r~~lf~kav~e~i~~l~~~~~~~~~~pDIIHaHdw~sallp~~l~~~~~~~  433 (632)
                      |++++|.++.+.+.+|..    .+++.+..+..|++++.++++.+..     .++|||||+|+|++++++.+++...   
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~pDIvH~h~~~~~l~~~~~~~~~---  152 (477)
T d1rzua_          81 LILDAPAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLP-----GWRPDMVHAHDWQAAMTPVYMRYAE---  152 (477)
T ss_dssp             EEEECHHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSS-----SCCCSEEEEEHHHHTTHHHHHHHSS---
T ss_pred             EEecChhhcccCCCcccCcccccccccHHHHHHHHHHHHhhhhhccc-----CCCCCEEEecchhHHHHHHHHHHhh---
Confidence            999999887655445432    3467778888888888888776532     4789999999999999888765421   


Q ss_pred             CCCCCCeEEEEEeCCcccCCCCCCccccCCCCcccccc--ccccCCCCchhHHHHHHHhhcCCeEEEechhHHHHHHHhh
Q 006770          434 GLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDL--FKLYDPVGGEHFNIFAAGLKTADRVVTVSRGYSWELKTAE  511 (632)
Q Consensus       434 ~~~~~iPvV~TIHn~~~qg~~p~~~l~~~glp~~~~~~--l~~~~p~~g~~~~i~r~~l~~AD~VItVS~~~a~el~~~~  511 (632)
                        ..++|+|+|+|++.++..++...+..++.+..++..  ..++     ..+++++.++..||.++++|..+++++....
T Consensus       153 --~~~ip~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ad~~~~vs~~~~~~~~~~~  225 (477)
T d1rzua_         153 --TPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYY-----NDVSFLKGGLQTATALSTVSPSYAEEILTAE  225 (477)
T ss_dssp             --SCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEET-----TEEEHHHHHHHHCSEEEESCHHHHHHTTSHH
T ss_pred             --CCCCCEEEEEecccccccCCHHHHHHhhcchhhccccccccc-----chhHHHHHHHHhhhhhhhccHHHHHHHHHHh
Confidence              367999999999877766666555544444332211  1111     1345677788899999999999998876555


Q ss_pred             cCCccccccccCCCcEEEeeCCCcCCCCCCccccccccCCCcccccccccCCchHHHHHHHHHhCCCCCCCCcEEEEEcC
Q 006770          512 GGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYCLDTLHTGKPQCKAALQREFGLPVRDDVPVIGFIGR  591 (632)
Q Consensus       512 ~G~gL~~il~~~~~Ki~vIpNGID~~~F~P~~~~~l~~~~~~~~s~ed~~~~K~~~k~~Lrk~lGL~~~~d~pvIlfVGR  591 (632)
                      +|++...+.+...+++.+|+||+|++.|+|.....++    .++..+. ......++.+++.+++++. ++.++|+|+||
T Consensus       226 ~~~~~~~~~~~~~~~~~vi~ngv~~~~~~p~~~~~i~----~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~~vgr  299 (477)
T d1rzua_         226 FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIH----DNYSAAN-LKNRALNKKAVAEHFRIDD-DGSPLFCVISR  299 (477)
T ss_dssp             HHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSS----SCCBTTB-CTTHHHHHHHHHHHHTCCC-SSSCEEEEESC
T ss_pred             cCcchhhhhhhccccEEEEECCcchhhcccccccccc----ccchhhh-HHHhhhhHHHHHHhccccc-CCccEEEEEee
Confidence            5555555555567899999999999999997665554    2222222 2345567778899999984 57899999999


Q ss_pred             CccccCHHHHHHHHhhccCCCcEEEEEecChhhHHHHHH
Q 006770          592 LDHQKGVDLIAEAIPWMMGQDVQLSHVGHWQTRFGRDAE  630 (632)
Q Consensus       592 L~~qKGvdlLLeA~~~L~~~dvqLVI~G~G~~~le~~lk  630 (632)
                      ++++||+++|++|++.+.+.+++|+|+|.|+...+..++
T Consensus       300 l~~~KG~~~Ll~a~~~~~~~~~~l~~~G~G~~~~~~~~~  338 (477)
T d1rzua_         300 LTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALL  338 (477)
T ss_dssp             BSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHH
T ss_pred             eeecCCcHHHHHHHHHHHhhCCeEEEEecCCchHHHHHH
Confidence            999999999999999988889999999999876555443
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure