Citrus Sinensis ID: 006802

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
Protein Sequence
MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccEEEEEccccccccccccccccccHHHHHHccHHHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHccccHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHcHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccEEEEEcccccHHHHHHHcccHHHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHEHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccEEEEc
Coil and Loop (DISEMBL)
MIMEKQSSFRARTMEKQQSIrsvtfekqpsIRRVMEKQqsfngestdkppsalgpmekqqsfhgvtidkqpstrgvmeKQKSFRGFIEKQKSFRVVMERQLsfigggerkknkdspgkrgdLQLHLAARAGNLSRVMEILQSCDANEAKDLLSkknqegetplyvAAESGHALIVEEMLQHMnletasiparngydsfhVAAKQGHLEVLKELLGefpnlvmttdlscsTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVskdpstgfrtdkkgqTALHMAVKGQNEDIVLELirpdpsvlklednkgnTALHIAIKKGRTQIVRCLLSIEgidvnslnkagespldVAEKLGNTELFSLLKEAGaahskdhgkppsatkQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIftvpgqyveektegfslGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRkaesrsrsfsmsvASDQEILNSEYKRMYAL
Flexible Loop (DISEMBL)
mimekqssfrartmekqqsirsvtfekqpsirRVMEkqqsfngestdkppsalgpmekqqsfhgvtidkqpstrgvMEKQKSFRGfiekqksfrVVMERQlsfigggerkknkdspgkrgDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALvskdpstgfrtdkkgqtALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAhskdhgkppsATKQLKQTVSDIKHDVQSqlqqsrqtgfkVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNirkaesrsrsfsmsvasdqeilnseykrmyal
Low Complexity Region (SEG)
MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFkvhkiakklkklhiSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAvvvvqtsvvvIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEsrsrsfsmsvasDQEILNSEYKRMYAL
Disordered region (IsUnstruct)
*************************************************************************************FI****SFRVVMERQLSF****************************NLSRVMEILQ*********************LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV*****************LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN*****************LF**********************************************FKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEA*************************************
Disordered Region (DISOPRED)
MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQS*Q**F************HISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEA****************************SEYKRMYAL
Disordered Region (DISEMBL)
*********************SVTFEKQPSIRRVMEKQ*************ALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIG*************RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA***************************************GFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRN***************ASDQEILNSEYKRMYAL
Disordered Region (DISPRO)
MI**KQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKL***********************LNSEYKRMYA*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	630	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.803	0.965	0.493	1e-133
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.811	0.866	0.427	1e-111
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.747	0.885	0.427	1e-107
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.412	0.066	0.322	2e-23
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.396	0.063	0.346	2e-22
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.395	0.211	0.328	3e-22
Q9ULH0	1771	Kinase D-interacting subs	no	no	0.407	0.145	0.351	5e-22
Q9EQG6	1762	Kinase D-interacting subs	no	no	0.406	0.145	0.349	3e-21
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.404	0.136	0.338	1e-20
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.458	0.153	0.319	2e-20

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 260/527 (49%), Positives = 366/527 (69%), Gaps = 21/527 (3%)

Query: 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHA 172
           K    +R D  LH A R G    ++E++   D  E K+LL+++NQ GET LYVAAE G+ 
Sbjct: 10  KQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYT 69

Query: 173 LIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL 232
            +V+ +++H +   A   A+NG+D+FH+AAK G+L+VL  L+   P L  T D S +TAL
Sbjct: 70  DMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTAL 129

Query: 233 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 292
           HTAA+QGH ++V FLL+   +LA IAR+NGKT LHSAAR GH  +VK L+ K      R 
Sbjct: 130 HTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRV 189

Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
           DKKGQTALHMAVKGQN +IV  L+  D S++   DNKGNT LHIA++K R +IV+ +L  
Sbjct: 190 DKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKY 249

Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK-----DHGKPPSATKQLKQT 407
             +   ++NK+GE+ LD+AEK G  E+  LL++ G  +++     +  +P  ++++LK+T
Sbjct: 250 CEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKET 309

Query: 408 VSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIF 467
           VS+I H+V +QL+Q+ +T  ++  IAK++ K+H  GLNNAINS+T+VA+LIATVAFAAIF
Sbjct: 310 VSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIF 369

Query: 468 TVPGQYVEEKTE---GFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEK 524
            VPGQY ++  +   G+SLG+A  A    F+IF VFDS ALFISLAVVVVQTSVVVIE +
Sbjct: 370 NVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERR 429

Query: 525 AKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCY 584
           AK+Q++ +INKLMW+AC+ IS+AF+SL++VVVGE  + LAV  T IG  IM++T+G+MCY
Sbjct: 430 AKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCY 489

Query: 585 CVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKR-MYAL 630
            VI +R+E             S+S   S+ SD E+ +S++ R +YA+
Sbjct: 490 WVIANRIEG------------SKSSPASMMSDPELADSKHNRKLYAV 524

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/545 (42%), Positives = 342/545 (62%), Gaps = 34/545 (6%)

Query: 106 GGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSC-------------DANEAK--- 149
            G++K  K   G+  D +LHLAA+ G+L+ V +IL+               DA  A+   
Sbjct: 60  AGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRA 119

Query: 150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEV 209
            ++++ N+ GET L+ AA+ GH  +V+E+L++ + E+ +   R+GYD  H+AA QGH  +
Sbjct: 120 SIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAI 179

Query: 210 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 269
           ++ LL     L  T   S +T L +AA +GH +VVN LL    NL +I+R+N K  LH A
Sbjct: 180 VEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLA 239

Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 329
           AR GH+EV+KAL+SKDP    R DKKGQTALHMAVKGQ+ ++V  L+  DP+++   D  
Sbjct: 240 ARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKS 299

Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE---- 385
            NTALH+A +K R +IV  LLS+   + N+L +  ++ LD+AE L  +E  S +KE    
Sbjct: 300 CNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLAR 359

Query: 386 AGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLN 445
           +GA  + +  +P     +L+ TV+ IK+DV  QL+Q+++T   VH I+K+L+KLH  G+N
Sbjct: 360 SGALRANELNQP---RDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGIN 416

Query: 446 NAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLAL 505
           NA NS TVVAVL ATVAFAAIFTVPG    +       G A +   A+F IFF+F++LAL
Sbjct: 417 NATNSVTVVAVLFATVAFAAIFTVPGGDNND-------GSAVVVGRASFKIFFIFNALAL 469

Query: 506 FISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAV 565
           F SLAVVVVQ ++V  E KA++++V VINKLMWLA +  S+AF++ +Y+VVG  + W A 
Sbjct: 470 FTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAE 529

Query: 566 SATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYK 625
             TV+GG IM   +G+M Y V+    ++K+ R++RK    +R    +     +  NSE  
Sbjct: 530 LVTVVGGVIMAGVLGTMTYYVV----KSKRTRSMRKKVKSARRSGSNSWHHSDFSNSEVD 585

Query: 626 RMYAL 630
            ++A+
Sbjct: 586 PIFAI 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  390 bits (1003), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/491 (42%), Positives = 318/491 (64%), Gaps = 20/491 (4%)

Query: 127 AARAGNLSRVMEILQSCDANEAKD----------LLSKKNQEGETPLYVAAESGHALIVE 176
           + R+G+LS++ +++ +   +E  D          L+S +N  GET +Y++A      I  
Sbjct: 17  SVRSGDLSQLQQLVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLEDIFR 76

Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
            +++  +LET  I +++  ++FHVAAK+GHL ++KELL  +P L    D S ++ L+ AA
Sbjct: 77  YLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAA 136

Query: 237 AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG 296
            Q H+++VN +L++D + A I R NGKT LH+A R G L +VKAL+ KD +     DKKG
Sbjct: 137 VQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKG 196

Query: 297 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 356
           QTALHMAVKG++ ++V E+++ D ++L   D KGNTALHIA +K R QI   LL+   I+
Sbjct: 197 QTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIE 256

Query: 357 VNSLNKAGESPLDVAEKLGNT----ELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIK 412
           VN++N   E+ +D+A+KL  +    E+   L EAGA H +  G+   A + LK+ VSDIK
Sbjct: 257 VNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEA-RALKRAVSDIK 315

Query: 413 HDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQ 472
           H+VQSQL Q+ +T  +V  IAK+L+KLH   + N  NS TVVAVL A++AF AIF +PGQ
Sbjct: 316 HEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQ 375

Query: 473 YVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFV 532
           Y    TEG  +GQA+IA    F +F + ++ +LFISLAVVVVQ ++V  + +A++++V V
Sbjct: 376 YF---TEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSV 432

Query: 533 INKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRME 592
           +NKLMW AC     AF+++ + VVG+ + W+A++ T++G  I++ T+ SMCY V   R  
Sbjct: 433 VNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFR 492

Query: 593 A--KKLRNIRK 601
           +     R IR+
Sbjct: 493 SGNDSQRRIRR 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/310 (32%), Positives = 151/310 (48%), Gaps = 50/310 (16%)

Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
            + G   LH+A++ GN + V  +L      +AK       ++G TPL+ AA SGH  +VE
Sbjct: 263 ARNGITPLHVASKRGNTNMVKLLLDRGGQIDAK------TRDGLTPLHCAARSGHDQVVE 316

Query: 177 EMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
            +L+      A + AR  NG    H+AA+  H+E +K LL ++   V    L   TALH 
Sbjct: 317 LLLERK----APLLARTKNGLSPLHMAAQGDHVECVKHLL-QYKAPVDDVTLDYLTALHV 371

Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARN--------------------------------NG 262
           AA  GH  V   LL+  +N    A N                                +G
Sbjct: 372 AAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESG 431

Query: 263 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 322
            T +H AA MGHL +V  L+    S    T+ +G+TALHMA +    ++V  L+R + ++
Sbjct: 432 LTPIHVAAFMGHLNIVLLLLQNGASPDV-TNIRGETALHMAARAGQVEVVRCLLR-NGAL 489

Query: 323 LKLEDNKGNTALHIAIKKGRTQIVRCLLS-IEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           +     +  T LHIA + G+T+IV+ LL  +   D  + N  G +PL ++ + G  ++ S
Sbjct: 490 VDARAREEQTPLHIASRLGKTEIVQLLLQHMAHPDAATTN--GYTPLHISAREGQVDVAS 547

Query: 382 LLKEAGAAHS 391
           +L EAGAAHS
Sbjct: 548 VLLEAGAAHS 557

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 142/271 (52%), Gaps = 21/271 (7%)

Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
            + G   LH+A++ GN + V  +L      +AK       ++G TPL+ AA SGH  +VE
Sbjct: 263 ARNGITPLHVASKRGNTNMVKLLLDRGGQIDAK------TRDGLTPLHCAARSGHDQVVE 316

Query: 177 EMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
            +L+      A + AR  NG    H+AA+  H+E +K LL +    V    L   TALH 
Sbjct: 317 LLLER----GAPLLARTKNGLSPLHMAAQGDHVECVKHLL-QHKAPVDDVTLDYLTALHV 371

Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 294
           AA  GH  V   LL+  +N    A N G T LH A +   ++V++ LV    S    T+ 
Sbjct: 372 AAHCGHYRVTKLLLDKRANPNARALN-GFTPLHIACKKNRIKVMELLVKYGASIQAITES 430

Query: 295 KGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
            G T +H+A    + +IVL L++    P V  +   +G TALH+A + G+ ++VRCLL  
Sbjct: 431 -GLTPIHVAAFMGHLNIVLLLLQNGASPDVTNI---RGETALHMAARAGQVEVVRCLLR- 485

Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
            G  V++  +  ++PL +A +LG TE+  LL
Sbjct: 486 NGALVDARAREEQTPLHIASRLGKTEIVQLL 516

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  107 bits (266), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 149/301 (49%), Gaps = 52/301 (17%)

Query: 124  LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
            LH AA++GNL+ V  +++    N+A D+ +K N  GET L+ AAESG+  +V  +++   
Sbjct: 836  LHFAAKSGNLNLVNWLIK----NKA-DIHAKTNS-GETILHFAAESGNLNLVNWLIK--- 886

Query: 184  LETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
               A I A+  +G    H AAK G+L ++  L+    ++   T+ S  T LH AA  G++
Sbjct: 887  -NKADIHAKTNSGETILHFAAKSGNLNLVNWLIKNKADIHAKTN-SGETILHFAAKSGNL 944

Query: 242  DVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
            ++VN+L++   N A I    N+G+T+LH AA  G+L +V  L+        +TD  G TA
Sbjct: 945  NLVNWLIK---NKADIHAKTNSGETILHFAAESGNLNLVSLLIHNGTDINTKTDD-GLTA 1000

Query: 300  LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL---------- 349
            LH AV+  N ++V  LI     V   + N G T LH A+  G   +V  L          
Sbjct: 1001 LHYAVESGNLNLVSLLIHKGIDV-NAKTNSGETILHFAVDLGSLDLVSLLMVRGADVNAK 1059

Query: 350  ----------------------LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 387
                                  L + G DVN+ N +GE+PL  A    + +L SLL   G
Sbjct: 1060 TDDGLTALHYAVESDNLALVSLLMVYGADVNAKNNSGETPLHYAVIFNSLDLVSLLIHNG 1119

Query: 388  A 388
            A
Sbjct: 1120 A 1120

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3

 Score =  106 bits (265), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/282 (35%), Positives = 151/282 (53%), Gaps = 25/282 (8%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           E+ K+ D   + G   L +AA  GNL  V E++++      +DL      +  T L  A+
Sbjct: 26  EKCKDVDERNECGQTPLMIAAEQGNLEIVKELIKNGANCNLEDL------DNWTALISAS 79

Query: 168 ESGHALIVEEMLQ-HMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDL 226
           + GH  IVEE+L+  +NLE   +    G+ +   A  +G  +V++ LL    N  +T   
Sbjct: 80  KEGHVHIVEELLKCGVNLEHRDM---GGWTALMWACYKGRTDVVELLLSHGANPSVTGLY 136

Query: 227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSK 284
           S    +  AA +GH D+V+ LL+   N AK+  ++  G T L  AAR GHLE VK L++ 
Sbjct: 137 SVYPIIW-AAGRGHADIVHLLLQ---NGAKVNCSDKYGTTPLVWAARKGHLECVKHLLA- 191

Query: 285 DPSTGFRTDKKG---QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
               G   D++G    TAL +AVKG     V E+++ +P+V  L D  GNTAL IA K+G
Sbjct: 192 ---MGADVDQEGANSMTALIVAVKGGYTQSVKEILKRNPNV-NLTDKDGNTALMIASKEG 247

Query: 342 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
            T+IV+ LL   G  VN  +++G++ L  A + G+ E+   L
Sbjct: 248 HTEIVQDLLDA-GTYVNIPDRSGDTVLIGAVRGGHVEIVRAL 288

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration (By similarity). Modulates stress-induced apoptosis of melanoma cells via regulation of the MEK/ERK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 150/283 (53%), Gaps = 27/283 (9%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           E+ K+ D   + G   L LAA  GN+  V E+L++      +DL      +  T L  A+
Sbjct: 26  EKCKDVDERNECGQTPLMLAAEQGNVEIVKELLKNGANCNLEDL------DNWTALISAS 79

Query: 168 ESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTD 225
           + GH  IVEE+L+      AS+  R+  G+ +   A  +G  +V++ LL    N  +T  
Sbjct: 80  KEGHIHIVEELLK----SGASLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVTGL 135

Query: 226 LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVS 283
            S    +  AA +GH D+V+ LL+   N AK+  ++  G T L  AAR GHLE VK L+ 
Sbjct: 136 YSVYPIIW-AAGRGHADIVHLLLQ---NGAKVNCSDKYGTTPLVWAARKGHLECVKHLL- 190

Query: 284 KDPSTGFRTDKKG---QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
              + G   D++G    TAL +AVKG     V E+++ +P+V  L D  GNTAL IA K+
Sbjct: 191 ---AMGADVDQEGANSMTALIVAVKGGYTQSVKEILKRNPNV-NLTDKDGNTALMIASKE 246

Query: 341 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
           G  +IV+ LL   G  VN  +++G++ L  A + G+ E+   L
Sbjct: 247 GHIEIVQDLLDA-GTYVNIPDRSGDTVLIGAVRGGHVEIVRAL 288

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 143/272 (52%), Gaps = 17/272 (6%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           G   LH AAR G++   + +L+  +A++A   ++KK   G TPL+VAA+ G   + E +L
Sbjct: 499 GHTPLHTAAREGHVDTALALLEK-EASQA--CMTKK---GFTPLHVAAKYGKVRLAELLL 552

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAA 237
           +H     A+   +NG    HVA    +L+++K LL  G  P+   +   +  T LH AA 
Sbjct: 553 EHDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAK 607

Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQ 297
           Q  I+V   LL+   + A      G T LH AA+ GH E+V  L+SK  + G   +K G 
Sbjct: 608 QNQIEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHTEMVALLLSKQ-ANGNLGNKSGL 665

Query: 298 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 357
           T LH+  +  +  +   LI+   +V       G T LH+A   G  ++V+ LL  +  DV
Sbjct: 666 TPLHLVSQEGHVPVADVLIKHGVTV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DV 723

Query: 358 NSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
           N+  K G SPL  A + G+T++ +LL + GA+
Sbjct: 724 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 755

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 21/310 (6%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           E   N +     G   LH+AAR G++  V+ +L+  +A++A   ++KK   G TPL+VAA
Sbjct: 491 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQA--CMTKK---GFTPLHVAA 544

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTD 225
           + G   + E +L+      A+   +NG    HVA    +L+++K LL  G  P+   +  
Sbjct: 545 KYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---SPA 599

Query: 226 LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 285
            +  T LH AA Q  ++V   LL+   + A      G T LH AA+ GH E+V  L+SK 
Sbjct: 600 WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 658

Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
            + G   +K G T LH+  +  +  +   LI+    ++      G T LH+A   G  ++
Sbjct: 659 -ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKL 716

Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH---SKDHGKPPSATK 402
           V+ LL  +  DVN+  K G SPL  A + G+T++ +LL + GA+    S D   P +  K
Sbjct: 717 VKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 775

Query: 403 QLKQ-TVSDI 411
           +L   +V+D+
Sbjct: 776 RLGYISVTDV 785

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
255576418	606	ankyrin repeat-containing protein, putat	0.960	0.998	0.769	0.0
359478231	595	PREDICTED: ankyrin repeat-containing pro	0.944	1.0	0.761	0.0
356506136	566	PREDICTED: ankyrin repeat-containing pro	0.887	0.987	0.807	0.0
356573310	558	PREDICTED: ankyrin repeat-containing pro	0.885	1.0	0.793	0.0
15225141	662	ankyrin repeats-containing protein [Arab	0.988	0.941	0.708	0.0
449444933	574	PREDICTED: ankyrin repeat-containing pro	0.906	0.994	0.754	0.0
296084361	534	unnamed protein product [Vitis vinifera]	0.847	1.0	0.792	0.0
224141131	522	predicted protein [Populus trichocarpa]	0.828	1.0	0.795	0.0
15220595	627	ankyrin repeats-containing protein [Arab	0.977	0.982	0.670	0.0
356506142	522	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.814	0.982	0.777	0.0

>gi|255576418|ref|XP_002529101.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223531452|gb|EEF33285.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/629 (76%), Positives = 541/629 (86%), Gaps = 24/629 (3%)

Query: 3   MEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSF 62
           MEKQ SF+ R MEKQ S +          ++VMEK  SF+G  T+ PP++ G ME     
Sbjct: 1   MEKQVSFKGRAMEKQVSFK----------QKVMEKLPSFHG-ITENPPTSHGLME----- 44

Query: 63  HGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDL 122
                 K PS RG +EKQKSFRGF+EKQKSFRV+MERQLSFIGGGERKKNK+SPGKRGD 
Sbjct: 45  ------KHPSFRGALEKQKSFRGFVEKQKSFRVIMERQLSFIGGGERKKNKESPGKRGDS 98

Query: 123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           Q+HLAARAGNLSRV EILQ+CD NEAKDLL+ KNQEGETPLY AAE+GH  IV EML++M
Sbjct: 99  QIHLAARAGNLSRVREILQNCDGNEAKDLLAIKNQEGETPLYAAAENGHVGIVAEMLEYM 158

Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID 242
           NLETASIPARNGYD FH+AAKQGHLEVL  LL  FPNL MTTDLSC+TALHTAA QGHID
Sbjct: 159 NLETASIPARNGYDPFHIAAKQGHLEVLNALLHVFPNLAMTTDLSCTTALHTAATQGHID 218

Query: 243 VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM 302
           VVN LLE DSNLAKIARNNGKT LHSAARMGH+EVV++L+SKDPSTG RTDKKGQTALHM
Sbjct: 219 VVNLLLETDSNLAKIARNNGKTALHSAARMGHVEVVRSLLSKDPSTGLRTDKKGQTALHM 278

Query: 303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 362
           AVKGQNE+IVLEL++PDP+ + LEDNKGNTALHIA KKGRTQ VRCLLS+EGI+VN++NK
Sbjct: 279 AVKGQNEEIVLELLKPDPAFMSLEDNKGNTALHIATKKGRTQNVRCLLSVEGINVNAINK 338

Query: 363 AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQS 422
           AGE+ LD+AEKLG+ EL S+LKEA A +SKD GKP +  KQLKQTVSDIKHDVQSQLQQ+
Sbjct: 339 AGETSLDIAEKLGSPELVSILKEARALNSKDLGKPQNPAKQLKQTVSDIKHDVQSQLQQT 398

Query: 423 RQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFS 482
           RQTGFKV KIAK+L+KLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQY+E+K +G S
Sbjct: 399 RQTGFKVQKIAKRLQKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYIEDKEKGTS 458

Query: 483 LGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACL 542
           LGQAHIA N AF+IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVF INKLMWLACL
Sbjct: 459 LGQAHIADNPAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFFINKLMWLACL 518

Query: 543 FISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKA 602
           FISIAFISLTYVVVGE  RWLA+ ATVIGG+IMLTTIGSMCYCVILHRME +      + 
Sbjct: 519 FISIAFISLTYVVVGEKYRWLAIYATVIGGSIMLTTIGSMCYCVILHRME-ESRLRSIRR 577

Query: 603 ESRSRSFSMSVASDQEILNSEY-KRMYAL 630
           ESRSRS+SMS+ S+QEI +SEY KRMYAL
Sbjct: 578 ESRSRSYSMSMVSEQEIFDSEYNKRMYAL 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478231|ref|XP_002279889.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/617 (76%), Positives = 529/617 (85%), Gaps = 22/617 (3%)

Query: 14  MEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPST 73
           MEK  S R VT EKQ S R VMEKQQSF G            MEKQQSF           
Sbjct: 1   MEKPTSSRGVTMEKQQSFRGVMEKQQSFRG-----------VMEKQQSF----------- 38

Query: 74  RGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNL 133
           RG+MEKQKSFRGF+EKQKSFR+ MERQLSF G  ERKK K+SPGKRGD  LHLAARAGNL
Sbjct: 39  RGLMEKQKSFRGFMEKQKSFRIAMERQLSFGGSSERKKVKESPGKRGDSHLHLAARAGNL 98

Query: 134 SRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193
           +RV EI++ C+++E + LLSK+NQEGETPLYVA+E+GHAL+V E+L+H++L+TASI A N
Sbjct: 99  TRVKEIIEKCESSELQALLSKQNQEGETPLYVASENGHALVVSELLEHVDLQTASIKANN 158

Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
           GYD FHVA KQGHLEVLKELL  FPNLVMTTD S STALHTAAAQGHIDVV+ LLE D N
Sbjct: 159 GYDPFHVATKQGHLEVLKELLRFFPNLVMTTDSSNSTALHTAAAQGHIDVVHLLLETDPN 218

Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 313
           LAKIARNNGKTVLHSAARMGHLEV+KALVSKDPS  FRTDKKGQTALHMAVKGQN +IV 
Sbjct: 219 LAKIARNNGKTVLHSAARMGHLEVLKALVSKDPSIVFRTDKKGQTALHMAVKGQNVEIVH 278

Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 373
            L++PDPSV+ LEDNKGNTALHIA +KGR+Q V+CLLS+EGI +N+ NKAGE+PLD+AEK
Sbjct: 279 ALLKPDPSVMSLEDNKGNTALHIATRKGRSQFVQCLLSVEGIKMNATNKAGETPLDIAEK 338

Query: 374 LGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIA 433
            G  E+ S+L+EAGA +S DHGKPP+A KQLKQTVSDIKHDVQSQLQQ+RQTG +V  IA
Sbjct: 339 FGTQEIASILREAGATNSADHGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGVRVQHIA 398

Query: 434 KKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAA 493
           K+LKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE  T+G SLGQAHIA+ AA
Sbjct: 399 KRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEVPTKGASLGQAHIARTAA 458

Query: 494 FIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTY 553
           F+IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTY
Sbjct: 459 FLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTY 518

Query: 554 VVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSV 613
           VVVG H+RWLAV ATVIG  IMLTTIG+MCYCVI++R+   K RNIRKAESRSRSFS+S+
Sbjct: 519 VVVGSHARWLAVCATVIGSVIMLTTIGAMCYCVIVNRIAEAKKRNIRKAESRSRSFSVSM 578

Query: 614 ASDQEILNSEYKRMYAL 630
           AS+ E+LNSEY+RMYAL
Sbjct: 579 ASESELLNSEYRRMYAL 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506136|ref|XP_003521843.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/567 (80%), Positives = 511/567 (90%), Gaps = 8/567 (1%)

Query: 65  VTIDKQPSTRG-VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQ 123
           VT++KQ S R   MEKQKSFRGF+EKQKSFR+VME+QLSF+G  ERKKNK+SPGKRGDL 
Sbjct: 7   VTMEKQSSFRASTMEKQKSFRGFMEKQKSFRIVMEKQLSFMGS-ERKKNKESPGKRGDLP 65

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           +HLAARAGNLSRV EI+Q+   NE KDLL+K+N EGETPLYVA+E+GHAL+V E+L +++
Sbjct: 66  IHLAARAGNLSRVKEIIQNYSNNETKDLLAKQNLEGETPLYVASENGHALVVSEILNYLD 125

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
           L+TASI ARNGYD FH+AAKQGHLEVL+ELL  FPNL MTTDLS STALHTAA QGHIDV
Sbjct: 126 LQTASIAARNGYDPFHIAAKQGHLEVLRELLHSFPNLAMTTDLSNSTALHTAATQGHIDV 185

Query: 244 VNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA 303
           V  LLE DSNLAKIARNNGKTVLHSAARMGHLEVVKAL++KDPSTGFRTDKKGQTALHMA
Sbjct: 186 VKLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLNKDPSTGFRTDKKGQTALHMA 245

Query: 304 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKA 363
           VKGQNE+I+LEL++PDP+VL LEDNKGNTALHIA KKGRTQ VRCLLS+E I++N+ NKA
Sbjct: 246 VKGQNEEILLELVKPDPAVLSLEDNKGNTALHIATKKGRTQNVRCLLSMECININATNKA 305

Query: 364 GESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSR 423
           GE+PLDVAEK G+ EL S+L++AGAA+S D  KPP+ +KQLKQTVSDIKHDVQSQLQQ+R
Sbjct: 306 GETPLDVAEKFGSPELVSILRDAGAANSTDQRKPPNPSKQLKQTVSDIKHDVQSQLQQTR 365

Query: 424 QTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSL 483
           QTG +V KIAKKLKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE+KT GFSL
Sbjct: 366 QTGMRVQKIAKKLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEDKTHGFSL 425

Query: 484 GQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLF 543
           GQA+IA NAAF+IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLF
Sbjct: 426 GQANIANNAAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLF 485

Query: 544 ISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAE 603
           ISIAFISLTYVVVG HSRWLA+ ATVIG  IML+TIGSMCYCVILHRME  KLR      
Sbjct: 486 ISIAFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRMEETKLR------ 539

Query: 604 SRSRSFSMSVASDQEILNSEYKRMYAL 630
           + SRSFSMS ASDQEILNSEYKRMYAL
Sbjct: 540 AESRSFSMSHASDQEILNSEYKRMYAL 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573310|ref|XP_003554805.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/575 (79%), Positives = 508/575 (88%), Gaps = 17/575 (2%)

Query: 56  MEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDS 115
           MEKQ SF   T          MEKQKSFRGF+EKQKSFR+VME+QLSFIG  ERKKNK+S
Sbjct: 1   MEKQSSFRAST----------MEKQKSFRGFMEKQKSFRIVMEKQLSFIGS-ERKKNKES 49

Query: 116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIV 175
           PGKRGDL +HLAARAGNLSRV EI+Q+    E KDLL+K+N EGETPLYVA+E+GHAL+V
Sbjct: 50  PGKRGDLPIHLAARAGNLSRVKEIIQNYSNYETKDLLAKQNLEGETPLYVASENGHALVV 109

Query: 176 EEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA 235
            E+L++++L+TASI A+NGYD FH+AAKQGHLEVL+ELL  FPNL MTTDLS STALHTA
Sbjct: 110 SEILKYLDLQTASIAAKNGYDPFHIAAKQGHLEVLRELLHSFPNLAMTTDLSNSTALHTA 169

Query: 236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK 295
           A QGHIDVVN LLE DSNLAKIARNNGKTVLHSAARMGHLEVVKAL++KD STGFRTDKK
Sbjct: 170 ATQGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLNKDRSTGFRTDKK 229

Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           GQTALHMAVKGQNE+I+LEL++PDP+VL LEDNKGNTALHIA KKGRTQ V CLLS+EGI
Sbjct: 230 GQTALHMAVKGQNEEILLELVKPDPAVLSLEDNKGNTALHIATKKGRTQNVHCLLSMEGI 289

Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDV 415
           ++N+ NKAGE+PLDVAEK G+ EL S+L++AGAA+S D  KPP+A+KQLKQTVSDIKHDV
Sbjct: 290 NINATNKAGETPLDVAEKFGSPELVSILRDAGAANSTDQRKPPNASKQLKQTVSDIKHDV 349

Query: 416 QSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVE 475
           QSQLQQ+RQTG +V KIAKKLKKLHISGLNNAI S+TVVAVLIATVAFAAIFTVPGQYVE
Sbjct: 350 QSQLQQTRQTGMRVQKIAKKLKKLHISGLNNAITSATVVAVLIATVAFAAIFTVPGQYVE 409

Query: 476 EKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINK 535
            KT GF+LGQA+IA NAAF+IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINK
Sbjct: 410 GKTHGFTLGQANIANNAAFLIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINK 469

Query: 536 LMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKK 595
           LMW+ACLFISIAFISLTYVVVG  SRWLA+ ATVIG  IML+TIGSMCYCVILHRME  K
Sbjct: 470 LMWMACLFISIAFISLTYVVVGSQSRWLAIYATVIGSLIMLSTIGSMCYCVILHRMEETK 529

Query: 596 LRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 630
           LR      + SRSFSMS ASDQEILNSEYKRMYAL
Sbjct: 530 LR------AESRSFSMSHASDQEILNSEYKRMYAL 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225141|ref|NP_180741.1| ankyrin repeats-containing protein [Arabidopsis thaliana] gi|4887754|gb|AAD32290.1| ankyrin-like protein [Arabidopsis thaliana] gi|330253495|gb|AEC08589.1| ankyrin repeats-containing protein [Arabidopsis thaliana]

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/652 (70%), Positives = 539/652 (82%), Gaps = 29/652 (4%)

Query: 4   EKQSSF-----------RARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDK-PPS 51
           EKQ SF           + ++MEKQQS R V  E QP   R +EKQ SF G + +    S
Sbjct: 15  EKQQSFNGIIINQTQENQTKSMEKQQSFRCVV-ENQPRKARALEKQVSFQGVNVENYQQS 73

Query: 52  ALG-PMEKQQSFHGVTID--------KQPS-TRGVMEKQKSFRG-FIEKQKSFRVVMERQ 100
            LG  MEKQQSF GV ++        K PS  R  ME+QKSFRG F+EKQKSFRVVMERQ
Sbjct: 74  RLGRSMEKQQSFRGVNVENHKRGVMEKLPSFGRATMERQKSFRGGFLEKQKSFRVVMERQ 133

Query: 101 LSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGE 160
           LSFIG  ER+K  +SPGKRGD  LH+AAR GNLS+V E+++ C  +E K+LLSK+N EGE
Sbjct: 134 LSFIG--ERRKKNESPGKRGDSSLHIAARTGNLSKVKELIRGC-GDELKELLSKQNLEGE 190

Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL 220
           TPLY AAE+GH+++VEEML+HM+LETASI ARNG+D FHVAAKQGHLEVLK LL  FPNL
Sbjct: 191 TPLYTAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNL 250

Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
            MTTDLSC+TALHTAA QGHIDVVN LLE DSNLAKIA+NNGKT LHSAARMGH+EVVK+
Sbjct: 251 AMTTDLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKS 310

Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
           L+ KDPS GFRTDKKGQTALHMAVKGQN+ IV+EL++PD +VL +EDNKGNT LHIA  K
Sbjct: 311 LIGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNK 370

Query: 341 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSA 400
           GR +IVRCL+S EGI++N +NKAG++PLDV+EK+GN EL S+LKEAGAA +KD GKP + 
Sbjct: 371 GRIKIVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQNP 430

Query: 401 TKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIAT 460
            KQLKQTVSDIKH+VQSQLQQSRQTG +V KIAK+LKKLHISGLNNAINS+TVVAVLIAT
Sbjct: 431 AKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLIAT 490

Query: 461 VAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVV 520
           VAFAAIFT+PGQY E++++G  LGQAHIA  A F++FF+FDSLALFISLAVVVVQTSVVV
Sbjct: 491 VAFAAIFTIPGQYEEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAVVVVQTSVVV 550

Query: 521 IEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIG 580
           IE+KAK++LVFVINKLMW ACLFISIAF+SL+Y+VVG+   WLAV ATVIGGTIMLTTIG
Sbjct: 551 IEQKAKKKLVFVINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIMLTTIG 610

Query: 581 SMCYCVILHRMEAKKLRNIRKAESRSRSFSMS-VASDQEILNSEY-KRMYAL 630
           +MCYCV++HRME  KLR+IRK  S+S+SFSMS + SD +ILN EY KRMYAL
Sbjct: 611 AMCYCVVMHRMEESKLRSIRKERSKSQSFSMSRMPSDSDILNGEYNKRMYAL 662

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444933|ref|XP_004140228.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] gi|449490552|ref|XP_004158638.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/574 (75%), Positives = 503/574 (87%), Gaps = 3/574 (0%)

Query: 59  QQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGK 118
           + S   ++++KQPS+R VME+QKS RGF+EKQKSFR+VMERQLSF+GG ERKK K+SPGK
Sbjct: 2   ENSLKEISLEKQPSSRVVMERQKSIRGFMEKQKSFRMVMERQLSFMGG-ERKKTKESPGK 60

Query: 119 RGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
           RGD  LHLAARAGN+ RV EILQ S D NE+  LLSK+N EGETPLY AAE+GH  +V E
Sbjct: 61  RGDSPLHLAARAGNVVRVKEILQNSNDKNESNSLLSKQNLEGETPLYAAAENGHDFVVAE 120

Query: 178 MLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
           ML++++LET+ + ARNGYD+FHVAAK GHL+VL+ELL   PNL MTTD   STALHTAA 
Sbjct: 121 MLKYLDLETSFMAARNGYDAFHVAAKHGHLKVLQELLDVHPNLAMTTDSVNSTALHTAAM 180

Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQ 297
           QGHIDVVN LLE DS L+KIARNNGKTVLHSAARMGH+EVVK LVSKDP+ GFRTDKKGQ
Sbjct: 181 QGHIDVVNLLLETDSELSKIARNNGKTVLHSAARMGHVEVVKLLVSKDPTLGFRTDKKGQ 240

Query: 298 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 357
           T LHMAVKGQN+ IV+EL+ PDPSVL LEDNKGNTALHIA+ K RT+ VR LLS+ GI++
Sbjct: 241 TPLHMAVKGQNDSIVMELLSPDPSVLTLEDNKGNTALHIAVLKRRTENVRRLLSVNGINI 300

Query: 358 NSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQS 417
           N++NK GE+PLD+AEK G++EL ++LKEAGA  SKD GKPPSA KQLKQTVSDIKHDV+S
Sbjct: 301 NAINKNGETPLDIAEKFGSSELVNILKEAGAVISKDQGKPPSAAKQLKQTVSDIKHDVES 360

Query: 418 QLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEK 477
           QLQQ+RQTGF+V +IAK+LKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQ+VE+K
Sbjct: 361 QLQQTRQTGFRVQRIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQFVEQK 420

Query: 478 TEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLM 537
           +   +LGQAHIA NAAFIIF V DS+ALFISLAVVVVQTSVVVIE+KAKRQLVFVINKLM
Sbjct: 421 SNDETLGQAHIATNAAFIIFMVSDSMALFISLAVVVVQTSVVVIEQKAKRQLVFVINKLM 480

Query: 538 WLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLR 597
           WLACLFIS+AFIS+TYVVVG + +WLA+ ATVIG TIMLTTIGSMCYCV+ HRME  K+R
Sbjct: 481 WLACLFISVAFISITYVVVGSNHKWLAICATVIGSTIMLTTIGSMCYCVVQHRMEESKMR 540

Query: 598 NIRKAESRSRSFSMS-VASDQEILNSEYKRMYAL 630
           +I++ ESRSRS+SMS VAS+ E+LN+EYKRMYAL
Sbjct: 541 SIKRGESRSRSYSMSVVASESELLNNEYKRMYAL 574

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084361|emb|CBI24749.3| unnamed protein product [Vitis vinifera]

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/534 (79%), Positives = 479/534 (89%)

Query: 97  MERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKN 156
           MERQLSF G  ERKK K+SPGKRGD  LHLAARAGNL+RV EI++ C+++E + LLSK+N
Sbjct: 1   MERQLSFGGSSERKKVKESPGKRGDSHLHLAARAGNLTRVKEIIEKCESSELQALLSKQN 60

Query: 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGE 216
           QEGETPLYVA+E+GHAL+V E+L+H++L+TASI A NGYD FHVA KQGHLEVLKELL  
Sbjct: 61  QEGETPLYVASENGHALVVSELLEHVDLQTASIKANNGYDPFHVATKQGHLEVLKELLRF 120

Query: 217 FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276
           FPNLVMTTD S STALHTAAAQGHIDVV+ LLE D NLAKIARNNGKTVLHSAARMGHLE
Sbjct: 121 FPNLVMTTDSSNSTALHTAAAQGHIDVVHLLLETDPNLAKIARNNGKTVLHSAARMGHLE 180

Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
           V+KALVSKDPS  FRTDKKGQTALHMAVKGQN +IV  L++PDPSV+ LEDNKGNTALHI
Sbjct: 181 VLKALVSKDPSIVFRTDKKGQTALHMAVKGQNVEIVHALLKPDPSVMSLEDNKGNTALHI 240

Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 396
           A +KGR+Q V+CLLS+EGI +N+ NKAGE+PLD+AEK G  E+ S+L+EAGA +S DHGK
Sbjct: 241 ATRKGRSQFVQCLLSVEGIKMNATNKAGETPLDIAEKFGTQEIASILREAGATNSADHGK 300

Query: 397 PPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAV 456
           PP+A KQLKQTVSDIKHDVQSQLQQ+RQTG +V  IAK+LKKLHISGLNNAINS+TVVAV
Sbjct: 301 PPNAAKQLKQTVSDIKHDVQSQLQQTRQTGVRVQHIAKRLKKLHISGLNNAINSATVVAV 360

Query: 457 LIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQT 516
           LIATVAFAAIFTVPGQYVE  T+G SLGQAHIA+ AAF+IFFVFDSLALFISLAVVVVQT
Sbjct: 361 LIATVAFAAIFTVPGQYVEVPTKGASLGQAHIARTAAFLIFFVFDSLALFISLAVVVVQT 420

Query: 517 SVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIML 576
           SVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTYVVVG H+RWLAV ATVIG  IML
Sbjct: 421 SVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYVVVGSHARWLAVCATVIGSVIML 480

Query: 577 TTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 630
           TTIG+MCYCVI++R+   K RNIRKAESRSRSFS+S+AS+ E+LNSEY+RMYAL
Sbjct: 481 TTIGAMCYCVIVNRIAEAKKRNIRKAESRSRSFSVSMASESELLNSEYRRMYAL 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141131|ref|XP_002323928.1| predicted protein [Populus trichocarpa] gi|222866930|gb|EEF04061.1| predicted protein [Populus trichocarpa]

 Score =  853 bits (2205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/523 (79%), Positives = 476/523 (91%), Gaps = 1/523 (0%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           ERK+ KDSPGKRGD Q+HLAAR GNLSRV EILQ+ D N+ K LL+ +NQ+GETPLY AA
Sbjct: 1   ERKRPKDSPGKRGDSQIHLAARTGNLSRVREILQNSDGNDLKVLLATQNQDGETPLYAAA 60

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLS 227
           E+GHA +V +ML++MNLETAS+ ARNGYD FHVAAKQGHL+VL ELL  FPNLVMTTDLS
Sbjct: 61  ENGHAGVVAKMLEYMNLETASVAARNGYDPFHVAAKQGHLDVLTELLRVFPNLVMTTDLS 120

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 287
           C+TALHTAA QGHIDVVN LLE D NL KIARNNGKTVLHSAARMGHLE+V++L+SKDPS
Sbjct: 121 CTTALHTAATQGHIDVVNLLLETDVNLVKIARNNGKTVLHSAARMGHLEIVRSLLSKDPS 180

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
           TGFRTDKKGQTALHMAVKGQNE+IVLEL++PD +V+ +EDNKGNTALHIA+ KGRTQ V 
Sbjct: 181 TGFRTDKKGQTALHMAVKGQNEEIVLELLKPDRTVMHVEDNKGNTALHIAVMKGRTQNVH 240

Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQT 407
           CLLS+EGI++N++NKAGE+PLD+AEKLG  EL S+LK+AGA +SKD GKPP+A KQLKQT
Sbjct: 241 CLLSVEGININAINKAGETPLDIAEKLGIQELVSILKKAGANNSKDCGKPPNAAKQLKQT 300

Query: 408 VSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIF 467
           VSDIKHDVQSQLQQ+RQTGF+V KIAKKLKKLHISGLNNAIN+ST+VAVLIATVAFAAIF
Sbjct: 301 VSDIKHDVQSQLQQTRQTGFRVQKIAKKLKKLHISGLNNAINNSTIVAVLIATVAFAAIF 360

Query: 468 TVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKR 527
           TVPGQYVEEK EG ++GQA++A+N AF++FFVFDSLALFISLAVVVVQTS+VVIE+KAK+
Sbjct: 361 TVPGQYVEEKIEGAAIGQANVARNPAFLVFFVFDSLALFISLAVVVVQTSIVVIEQKAKK 420

Query: 528 QLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVI 587
           QLVFVINKLMWLACLFIS AFISLTYVVVG++SRWLA+ ATVIGG IML TIGSMCYCV+
Sbjct: 421 QLVFVINKLMWLACLFISAAFISLTYVVVGKNSRWLAIYATVIGGLIMLATIGSMCYCVV 480

Query: 588 LHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 630
           LH+ME  KLRNIR+ E+R  S+SMSV SDQEILNSEY+RMYAL
Sbjct: 481 LHQMEESKLRNIRR-ETRPGSYSMSVESDQEILNSEYRRMYAL 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220595|ref|NP_172055.1| ankyrin repeats-containing protein [Arabidopsis thaliana] gi|4836914|gb|AAD30616.1|AC007153_8 Hypothetical protein [Arabidopsis thaliana] gi|332189749|gb|AEE27870.1| ankyrin repeats-containing protein [Arabidopsis thaliana]

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/634 (67%), Positives = 521/634 (82%), Gaps = 18/634 (2%)

Query: 2   IMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQS 61
           +MEKQ S R  ++E+QQS+R V  E Q    R ++KQ SF          A+  +EK   
Sbjct: 7   VMEKQESVRGNSVEEQQSLRCVGAENQVRKGRALDKQVSF---------LAVNVVEK--- 54

Query: 62  FHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIG-GGERKKNKDSPGKRG 120
            HG+           ME+Q+SFRGF+EKQKSFRVVMERQLSF+  GGERKK  DSPGKRG
Sbjct: 55  -HGIKGRAMEKQERAMERQRSFRGFVEKQKSFRVVMERQLSFMNVGGERKKKTDSPGKRG 113

Query: 121 DLQLHLAARAGNLSRVMEILQSCDA-NEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           D  LHLAAR GNL +VME++++C+   E K+L SK+N EGETPLY AAE+GH+L+VEEML
Sbjct: 114 DSPLHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYSAAENGHSLVVEEML 173

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239
           +HM+L+TAS+ ARNG+D FHVAAKQGH+E LK+LL  FPNL MT DLSC+TALHTAA+QG
Sbjct: 174 KHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLSCTTALHTAASQG 233

Query: 240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
           H DVVN LL+ DS+LAKIA+NNGKT LHSAARMGH EVVK+L+  D S GFRTDKKGQTA
Sbjct: 234 HTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGNDASIGFRTDKKGQTA 293

Query: 300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 359
           LHMAVKGQNE IVLEL++PDP++L +ED+KGNT LH A  KGR +IVRCL+S +GI++N+
Sbjct: 294 LHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNA 353

Query: 360 LNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQL 419
           +NKAG++ LD+AEK+GN EL S+LKEAGAA +KD GKP +  KQL QTVSDIKH+VQSQL
Sbjct: 354 MNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNPAKQLNQTVSDIKHEVQSQL 413

Query: 420 QQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTE 479
           QQSRQTG +V +IAK+LKKLHI+GLNNAINS+TVVAVLIATVAFAAIFT+PGQY E++T+
Sbjct: 414 QQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRTK 473

Query: 480 G-FSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMW 538
           G   LG+A IA  A F++FF+FDSLALFISLAVVVVQTSVVVIE+KAK+ LVFVINKLMW
Sbjct: 474 GLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKNLVFVINKLMW 533

Query: 539 LACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRN 598
           LACLFIS+AF+SL+++VVG+   WLA+ AT+IGGTIMLTTIG+MCYCV++HR+E  KL++
Sbjct: 534 LACLFISVAFVSLSFIVVGKEDIWLAICATIIGGTIMLTTIGAMCYCVVMHRIEESKLKS 593

Query: 599 IRKAESRSRSFSMS-VASDQEILNSEY-KRMYAL 630
           +RK  S+S+SFS+S + S+ EILN E+ KRMYAL
Sbjct: 594 LRKERSKSKSFSLSHMPSESEILNGEFNKRMYAL 627

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506142|ref|XP_003521846.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like, partial [Glycine max]

 Score =  816 bits (2108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/527 (77%), Positives = 461/527 (87%), Gaps = 14/527 (2%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           NK+SPGKRGDL +HLAARAGNLSRV EI+Q+    E KDLL+K+N EGETPLYVA+ +GH
Sbjct: 2   NKESPGKRGDLSIHLAARAGNLSRVKEIIQNYSNYETKDLLAKQNLEGETPLYVASANGH 61

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
           AL++ E+L++++L+T SI A+NGYD FH+AAKQGHLEVL+ELL  FPNL MTTDLS STA
Sbjct: 62  ALVIREILKYLDLQTVSIAAKNGYDPFHIAAKQGHLEVLRELLHSFPNLAMTTDLSNSTA 121

Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           LHTAA QGHIDVVN LLE DSNLAKIARNNGKTVLHSAARMGHLEVVKAL++KD STGFR
Sbjct: 122 LHTAATQGHIDVVNLLLESDSNLAKIARNNGKTVLHSAARMGHLEVVKALLNKDXSTGFR 181

Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
           TDKKGQTALHMAVKGQNE+I++EL++PDP+VL LEDNKGNTALHIA KKGRTQ VRCLLS
Sbjct: 182 TDKKGQTALHMAVKGQNEEILMELVKPDPAVLSLEDNKGNTALHIATKKGRTQNVRCLLS 241

Query: 352 IEGIDVNSLNKAGESPLDVAEKL---GNTELF-----SLLKEAGAAHSKDHGKPPSATKQ 403
           +EGI++N+ NKAGE+PLD  +K    G T        S+L++AGAA+S D  KPP+A+KQ
Sbjct: 242 MEGININATNKAGETPLDKKKKTSHQGTTLPLHQGSPSVLRDAGAANSTDQRKPPNASKQ 301

Query: 404 LKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAF 463
           LKQTVSDIKHDVQSQLQQ+RQ G +V KIAKKLKKLHISGLNN I S+TVVAVLIATVAF
Sbjct: 302 LKQTVSDIKHDVQSQLQQTRQNGMRVQKIAKKLKKLHISGLNNVITSATVVAVLIATVAF 361

Query: 464 AAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEE 523
           AAIFTVPGQYVE KT GFSLGQA+IA NAAF+IFFVFDS+ALFISLAVVVVQTSVVVIE+
Sbjct: 362 AAIFTVPGQYVEGKTHGFSLGQANIANNAAFLIFFVFDSMALFISLAVVVVQTSVVVIEQ 421

Query: 524 KAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMC 583
           K K+QLVFVINKLMW+ACLFISIAFISLTYVVVG HSRWLA+ ATVIG  IML+TIGSMC
Sbjct: 422 KTKKQLVFVINKLMWMACLFISIAFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMC 481

Query: 584 YCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL 630
           YCVILHRME  KLR      + SRSFSMS ASDQEILNSEYKRMYAL
Sbjct: 482 YCVILHRMEETKLR------AESRSFSMSHASDQEILNSEYKRMYAL 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.993	0.945	0.666	2.2e-217
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.977	0.982	0.629	4.2e-205
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.846	0.981	0.529	1.9e-140
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.774	0.931	0.475	1e-114
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.809	0.864	0.400	1.1e-92
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.806	0.954	0.387	5.1e-90
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.766	0.795	0.406	2.8e-89
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.728	0.767	0.269	1.4e-35
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.414	0.385	0.278	1.4e-28
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.704	0.738	0.253	1.7e-28

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 2100 (744.3 bits), Expect = 2.2e-217, P = 2.2e-217
 Identities = 429/644 (66%), Positives = 504/644 (78%)

Query:     1 MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDK-PPSALG-PMEK 58
             +I+ +    + ++MEKQQS R V  E QP   R +EKQ SF G + +    S LG  MEK
Sbjct:    23 IIINQTQENQTKSMEKQQSFRCVV-ENQPRKARALEKQVSFQGVNVENYQQSRLGRSMEK 81

Query:    59 QQSFHGVTID--------KQPST-RGVMEKQKSFRG-FIEKQKSFRVVMERQLSFIGGGE 108
             QQSF GV ++        K PS  R  ME+QKSFRG F+EKQKSFRVVMERQLSFIG  E
Sbjct:    82 QQSFRGVNVENHKRGVMEKLPSFGRATMERQKSFRGGFLEKQKSFRVVMERQLSFIG--E 139

Query:   109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE 168
             R+K  +SPGKRGD  LH+AAR GNLS+V E+++ C  +E K+LLSK+N EGETPLY AAE
Sbjct:   140 RRKKNESPGKRGDSSLHIAARTGNLSKVKELIRGC-GDELKELLSKQNLEGETPLYTAAE 198

Query:   169 SGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC 228
             +GH+++VEEML+HM+LETASI ARNG+D FHVAAKQGHLEVLK LL  FPNL MTTDLSC
Sbjct:   199 NGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLAMTTDLSC 258

Query:   229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 288
             +TALHTAA QGHIDVVN LLE DSNLAKIA+NNGKT LHSAARMGH+EVVK+L+ KDPS 
Sbjct:   259 TTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKSLIGKDPSI 318

Query:   289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
             GFRTDKKGQTALHMAVKGQN+ IV+EL++PD +VL +EDNKGNT LHIA  KGR +IVRC
Sbjct:   319 GFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNKGRIKIVRC 378

Query:   349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTV 408
             L+S EGI++N +NKAG++PLDV+EK+GN EL S+LKEAGAA +KD GKP +  KQLKQTV
Sbjct:   379 LVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQNPAKQLKQTV 438

Query:   409 SDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFT 468
             SDIKH+VQSQLQQSRQTG               SGLNNAINS+TVVAVLIATVAFAAIFT
Sbjct:   439 SDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFT 498

Query:   469 VPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQ 528
             +PGQY E++++G  LGQAHIA  A F++FF+FDSLALFISLA          IE+KAK++
Sbjct:   499 IPGQYEEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKK 558

Query:   529 LVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVIL 588
             LVFVINKLMW ACLFISIAF+SL+Y+VVG+   WLAV ATVIGGTIMLTTIG+MCYCV++
Sbjct:   559 LVFVINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIMLTTIGAMCYCVVM 618

Query:   589 HRMEAKKLRNIRKAEXXXXXXXXXXX-XDQEILNSEY-KRMYAL 630
             HRME  KLR+IRK               D +ILN EY KRMYAL
Sbjct:   619 HRMEESKLRSIRKERSKSQSFSMSRMPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1984 (703.5 bits), Expect = 4.2e-205, P = 4.2e-205
 Identities = 399/634 (62%), Positives = 489/634 (77%)

Query:     2 IMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQS 61
             +MEKQ S R  ++E+QQS+R V  E Q    R ++KQ SF          A+  +EK   
Sbjct:     7 VMEKQESVRGNSVEEQQSLRCVGAENQVRKGRALDKQVSF---------LAVNVVEKH-G 56

Query:    62 FHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIG-GGERKKNKDSPGKRG 120
               G  ++KQ      ME+Q+SFRGF+EKQKSFRVVMERQLSF+  GGERKK  DSPGKRG
Sbjct:    57 IKGRAMEKQERA---MERQRSFRGFVEKQKSFRVVMERQLSFMNVGGERKKKTDSPGKRG 113

Query:   121 DLQLHLAARAGNLSRVMEILQSCDA-NEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
             D  LHLAAR GNL +VME++++C+   E K+L SK+N EGETPLY AAE+GH+L+VEEML
Sbjct:   114 DSPLHLAARTGNLGKVMELIRACNGIEELKELSSKQNLEGETPLYSAAENGHSLVVEEML 173

Query:   180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239
             +HM+L+TAS+ ARNG+D FHVAAKQGH+E LK+LL  FPNL MT DLSC+TALHTAA+QG
Sbjct:   174 KHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNLAMTVDLSCTTALHTAASQG 233

Query:   240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
             H DVVN LL+ DS+LAKIA+NNGKT LHSAARMGH EVVK+L+  D S GFRTDKKGQTA
Sbjct:   234 HTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKSLIGNDASIGFRTDKKGQTA 293

Query:   300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 359
             LHMAVKGQNE IVLEL++PDP++L +ED+KGNT LH A  KGR +IVRCL+S +GI++N+
Sbjct:   294 LHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNA 353

Query:   360 LNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQL 419
             +NKAG++ LD+AEK+GN EL S+LKEAGAA +KD GKP +  KQL QTVSDIKH+VQSQL
Sbjct:   354 MNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNPAKQLNQTVSDIKHEVQSQL 413

Query:   420 QQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTE 479
             QQSRQTG               +GLNNAINS+TVVAVLIATVAFAAIFT+PGQY E++T+
Sbjct:   414 QQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRTK 473

Query:   480 GFSL-GQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMW 538
             G  L G+A IA  A F++FF+FDSLALFISLA          IE+KAK+ LVFVINKLMW
Sbjct:   474 GLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKNLVFVINKLMW 533

Query:   539 LACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRN 598
             LACLFIS+AF+SL+++VVG+   WLA+ AT+IGGTIMLTTIG+MCYCV++HR+E  KL++
Sbjct:   534 LACLFISVAFVSLSFIVVGKEDIWLAICATIIGGTIMLTTIGAMCYCVVMHRIEESKLKS 593

Query:   599 IRKAEXXXXXXXXXXX-XDQEILNSEY-KRMYAL 630
             +RK               + EILN E+ KRMYAL
Sbjct:   594 LRKERSKSKSFSLSHMPSESEILNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 288/544 (52%), Positives = 374/544 (68%)

Query:    97 MERQLSFIGGG---ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS 153
             ME +   + G    ++K  K   GKR D  LH A R GN  RV+EIL     +E   LL 
Sbjct:     1 MEGEEDTVAGSSIPKKKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLG 60

Query:   154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKEL 213
             K+NQ GET LYVAAE G   IV+EM+   +L    I ARNG+D+FH+AAKQG L+VLK L
Sbjct:    61 KQNQSGETALYVAAEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVL 120

Query:   214 LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273
                   L MT DLS +TALHTAA QGH +VVNFLLE+ S+LA IA++NGKT LHSA+R G
Sbjct:   121 AEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNG 180

Query:   274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 333
             H++V+KAL++ +P+   R DKKGQTALHMAVKG N ++V ELI+ D S + + D KGNTA
Sbjct:   181 HVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTA 240

Query:   334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 393
             LHIA +KGR+QIV+ LL+    D  ++N++GE+ LD AEK+GN E+  +L++ G   +K 
Sbjct:   241 LHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSAKT 300

Query:   394 HGKP--PSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNNAINSS 451
               KP  P+  ++LKQTVSDIKH+V +QL+ +R T                 GLNNAINS+
Sbjct:   301 I-KPSGPNPARELKQTVSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINST 359

Query:   452 TVVAVLIATVAFAAIFTVPGQYVEEKT---EGFSLGQAHIAKNAAFIIFFVFDSLALFIS 508
             TVVAVLIATVAFAAIFTVPGQYVE+ +   +G SLG+A+IA    FIIFF+FDS+ALFIS
Sbjct:   360 TVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFIS 419

Query:   509 LAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSAT 568
             LA          IE KAK+Q++ VINKLMWLAC+ IS+AF++L++VVVGE  +WLA+  T
Sbjct:   420 LAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGEEEKWLAIWVT 479

Query:   569 VIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEXXXXXXXXXX--XXDQEILNSEYKR 626
              IG TIM+TT+G+MCY +I H++EA  LRNIR++               D +IL +E K+
Sbjct:   480 AIGATIMITTLGTMCYWIIQHKIEAANLRNIRRSSINSISGSWGIPQLTDSDILQNECKK 539

Query:   627 MYAL 630
             MYA+
Sbjct:   540 MYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
 Identities = 236/496 (47%), Positives = 331/496 (66%)

Query:   108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
             ++   K    +R D  LH A R G    ++E++   D  E K+LL+++NQ GET LYVAA
Sbjct:     5 KKTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAA 64

Query:   168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLS 227
             E G+  +V+ +++H +   A   A+NG+D+FH+AAK G+L+VL  L+   P L  T D S
Sbjct:    65 EYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSS 124

Query:   228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 287
              +TALHTAA+QGH ++V FLL+   +LA IAR+NGKT LHSAAR GH  +VK L+ K   
Sbjct:   125 KTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAG 184

Query:   288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                R DKKGQTALHMAVKGQN +IV  L+  D S++   DNKGNT LHIA++K R +IV+
Sbjct:   185 MVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQ 244

Query:   348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK-----DHGKPPSATK 402
              +L    +   ++NK+GE+ LD+AEK G  E+  LL++ G  +++     +  +P  +++
Sbjct:   245 TVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSR 304

Query:   403 QLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVA 462
             +LK+TVS+I H+V +QL+Q+ +T                 GLNNAINS+T+VA+LIATVA
Sbjct:   305 KLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVA 364

Query:   463 FAAIFTVPGQYVEEKTE---GFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXX 519
             FAAIF VPGQY ++  +   G+SLG+A  A    F+IF VFDS ALFISLA         
Sbjct:   365 FAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVV 424

Query:   520 XIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTI 579
              IE +AK+Q++ +INKLMW+AC+ IS+AF+SL++VVVGE  + LAV  T IG  IM++T+
Sbjct:   425 VIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTL 484

Query:   580 GSMCYCVILHRMEAKK 595
             G+MCY VI +R+E  K
Sbjct:   485 GTMCYWVIANRIEGSK 500

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 218/544 (40%), Positives = 321/544 (59%)

Query:   107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSC-------------DANEAK---D 150
             G++K  K   G+  D +LHLAA+ G+L+ V +IL+               DA  A+    
Sbjct:    61 GKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRAS 120

Query:   151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVL 210
             ++++ N+ GET L+ AA+ GH  +V+E+L++ + E+ +   R+GYD  H+AA QGH  ++
Sbjct:   121 IVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIV 180

Query:   211 KELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA 270
             + LL     L  T   S +T L +AA +GH +VVN LL    NL +I+R+N K  LH AA
Sbjct:   181 EVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAA 240

Query:   271 RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG 330
             R GH+EV+KAL+SKDP    R DKKGQTALHMAVKGQ+ ++V  L+  DP+++   D   
Sbjct:   241 RQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSC 300

Query:   331 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE----A 386
             NTALH+A +K R +IV  LLS+   + N+L +  ++ LD+AE L  +E  S +KE    +
Sbjct:   301 NTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARS 360

Query:   387 GAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNN 446
             GA  + +  +P     +L+ TV+ IK+DV  QL+Q+++T                 G+NN
Sbjct:   361 GALRANELNQPRD---ELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINN 417

Query:   447 AINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALF 506
             A NS TVVAVL ATVAFAAIFTVPG    +  +G     A +   A+F IFF+F++LALF
Sbjct:   418 ATNSVTVVAVLFATVAFAAIFTVPGG---DNNDG----SAVVVGRASFKIFFIFNALALF 470

Query:   507 ISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVS 566
              SLA           E KA++++V VINKLMWLA +  S+AF++ +Y+VVG  + W A  
Sbjct:   471 TSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAEL 530

Query:   567 ATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEXXXXXXXXXXXXDQEILNSEYKR 626
              TV+GG IM   +G+M Y V+    ++K+ R++RK                +  NSE   
Sbjct:   531 VTVVGGVIMAGVLGTMTYYVV----KSKRTRSMRKKVKSARRSGSNSWHHSDFSNSEVDP 586

Query:   627 MYAL 630
             ++A+
Sbjct:   587 IFAI 590

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
 Identities = 201/519 (38%), Positives = 304/519 (58%)

Query:   118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
             + GDL   L     NL+    I +S   +   +L+S +N  GET +Y++A      I   
Sbjct:    19 RSGDLS-QLQQLVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLEDIFRY 77

Query:   178 MLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
             +++  +LET  I +++  ++FHVAAK+GHL ++KELL  +P L    D S ++ L+ AA 
Sbjct:    78 LIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAV 137

Query:   238 QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQ 297
             Q H+++VN +L++D + A I R NGKT LH+A R G L +VKAL+ KD +     DKKGQ
Sbjct:   138 QDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQ 197

Query:   298 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 357
             TALHMAVKG++ ++V E+++ D ++L   D KGNTALHIA +K R QI   LL+   I+V
Sbjct:   198 TALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEV 257

Query:   358 NSLNKAGESPLDVAEKLGNTE----LFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKH 413
             N++N   E+ +D+A+KL  +E    +   L EAGA H +  G+   A + LK+ VSDIKH
Sbjct:   258 NAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEA-RALKRAVSDIKH 316

Query:   414 DVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQY 473
             +VQSQL Q+ +T                  + N  NS TVVAVL A++AF AIF +PGQY
Sbjct:   317 EVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQY 376

Query:   474 VEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVI 533
                 TEG  +GQA+IA    F +F + ++ +LFISLA           + +A++++V V+
Sbjct:   377 F---TEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVV 433

Query:   534 NKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEA 593
             NKLMW AC     AF+++ + VVG+ + W+A++ T++G  I++ T+ SMCY V   R  +
Sbjct:   434 NKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFRS 493

Query:   594 --KKLRNIRKAEXXXXXXXXXXXXDQEILNSEYKRMYAL 630
                  R IR+                    S+++++ AL
Sbjct:   494 GNDSQRRIRRGSSKSFSWSYSHHVSDFEDESDFEKIIAL 532

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 210/517 (40%), Positives = 311/517 (60%)

Query:   107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA------------NEAKDLLS- 153
             G++K  K   G+  D +LHLAA+ G+L+ V +IL   D+            +E   +++ 
Sbjct:    75 GKKKYVKQVTGRHNDTELHLAAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTS 134

Query:   154 ---KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVL 210
                + N+ GETPL+ AAE G+  +V+E+L +  +E+      +G+D+ H+A  QGH  ++
Sbjct:   135 VVNEVNELGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIV 194

Query:   211 KELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA 270
             + LL   P L  T   S +T L +AA +GH +VVN LL  DS+L +I+R+NGK  LH AA
Sbjct:   195 QLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAA 254

Query:   271 RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG 330
             R GH+++V+ L+ KDP    RTDKKGQT+LHMAVKG +  +V  L+R DP+++ L D  G
Sbjct:   255 RQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFG 314

Query:   331 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE----A 386
             NT LHIA +K R +IV  LL +   +VN+L +  ++  D+AE L ++E  + +KE     
Sbjct:   315 NTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKEILSRC 374

Query:   387 GAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNN 446
             GA  + +  +P     +L++TV++IK DV +QL+Q+R+T                +G+NN
Sbjct:   375 GALKANELNQPRD---ELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINN 431

Query:   447 AINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALF 506
             A NS TVVAVL ATVAFAAIFTVPG    +   G ++   H     +F IFF+F+++ALF
Sbjct:   432 ATNSVTVVAVLFATVAFAAIFTVPGG---DDDHGVAV-MVHAT---SFKIFFIFNAIALF 484

Query:   507 ISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVS 566
              SLA           E K +R++V VINKLMWLA +  ++AFIS +Y+VVG  +R+ AV 
Sbjct:   485 TSLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVVGRRNRYAAVV 544

Query:   567 ATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAE 603
              TVIG   M   +  M Y V+    ++K+ R +RK E
Sbjct:   545 VTVIGTVTMTGILSIMTYYVV----KSKRTRIVRKKE 577

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.4e-35, P = 1.4e-35
 Identities = 132/490 (26%), Positives = 230/490 (46%)

Query:   120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
             G+  LHLAA  GN++ + ++L++    EA+ +  K N++G+T   +A  + +      ++
Sbjct:   102 GNTPLHLAAEIGNINILWKMLET---GEAECM--KINKQGQTAFILACLNNNVNSARILV 156

Query:   180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239
             +     T+S+         + A  +    ++  +L +FPNL++  D   ST LH A   G
Sbjct:   157 EG----TSSMTMVE----LNAAFSEQQQVIIDSILEKFPNLILDADEEQSTLLHKACKSG 208

Query:   240 HIDVVNFLLEIDSN--LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG- 296
             ++++   LL++D N  +A+    +G T LH A   G +E++K  + K PS+ F    +G 
Sbjct:   209 NLEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGSVEILKEFLCKAPSS-FNITTQGT 267

Query:   297 -QTALHMAVKGQNEDIVLELIRPDP--SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 353
              +T  H+A K Q     + + +      +L   D + NT LH+A     T +VR +LS  
Sbjct:   268 IETVFHLAAKYQKTKAFIFMAQSANIRQLLYSLDAEDNTVLHVAASVDSTSLVRHILSET 327

Query:   354 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKH 413
              IDV   NK G + +D+ +K G    F LL       ++   +P    K   + V  I++
Sbjct:   328 TIDVTLKNKKGFAAVDLIDKEGVD--FPLLSLWFRDEAEKIQRPARYVKFAHEPVELIRN 385

Query:   414 DVQSQLQQSRQTGFXXXXXXXX----XXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTV 469
                 +   S                         L NA N+ T+VAVLIA+VAF      
Sbjct:   386 TNNGEKLSSESRAMDLLREGRDPRNKEREMHSESLQNARNTITIVAVLIASVAFTCGINP 445

Query:   470 PGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQL 529
             PG  V +  +G  +G+A   +  AF IF V +++ALF SL+             KA +  
Sbjct:   446 PGG-VHQ--DGPFIGKATAGRTLAFKIFSVANNIALFTSLSIVTLLVSIISYRTKALKMC 502

Query:   530 VFVINKLMWLACLFISIAFISLTYVVV--GEHSRWLAVSATVIGGTIMLTTIGSMCYCVI 587
             V + +K+MWLA   ++ A+ +  ++ V   E S+WL  + + I    + +    + + ++
Sbjct:   503 VVIAHKMMWLAVASMATAYAASAWITVPHNEGSKWLVYTTSAIASVALGSMFVYVSFMMV 562

Query:   588 LHRMEAKKLR 597
              H ++  KLR
Sbjct:   563 KHILKKDKLR 572

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
 Identities = 77/276 (27%), Positives = 138/276 (50%)

Query:   107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA 166
             G  KK   +  +  D  LH++ +  +L      + SC     + L    N +G +PLY+A
Sbjct:   197 GVAKKIYFAKDRHQDNALHVSLKRKHLK-----VASCLVCAEQSLSFVANNDGVSPLYLA 251

Query:   167 AESGHALIVEEMLQHMN---LETASIPARNGYDSF-HVAAKQGHLEVLKELLGEFPNLVM 222
              E+G A + + M QH N     T+++ ++ G  S  H A K    ++L  +L E  +L+ 
Sbjct:   252 VEAGQADLAKTMWQHSNNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILSEDASLIN 311

Query:   223 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 282
               D    T L   A+ G+ +   +LL+   +   ++ ++G   +H A + G+++++KA++
Sbjct:   312 FRDEG-RTCLSFGASLGYYEGFCYLLDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAIL 370

Query:   283 SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKL---EDNKGNTALHIA 337
              + P      D++ Q  LH+A K    +++  ++R   D +  KL   ED  GNT LH+A
Sbjct:   371 KRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKDKNKEKLINEEDANGNTPLHLA 430

Query:   338 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 373
              K    ++V  L     +D+ +LN  G + LD+AEK
Sbjct:   431 TKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEK 466

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 1.7e-28, P = 1.7e-28
 Identities = 123/486 (25%), Positives = 225/486 (46%)

Query:   120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
             GD  LHLAA  G+++ VM++L +       +L S +N + +TPL++A  S    I  E  
Sbjct:    71 GDTPLHLAALLGDVNIVMQMLDT-----GLELYSARNNKNQTPLHLAFVS----IFMEAA 121

Query:   180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTT-----DLSCSTALHT 234
             + +  +T S+      D  + A   G   ++  +L  FP L         D S ST LH 
Sbjct:   122 KFIVEKTNSVDL----DELNFALSSGSTCIVGIILERFPELARKNAWEVEDGSRSTLLHY 177

Query:   235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP-STGFRTD 293
             A  +G +++ + LL ++  L +   + G + LH A + G + +++  + K P S   RT 
Sbjct:   178 ACDKGDLELTSILLGLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTP 237

Query:   294 KKGQTALHMAVKGQNEDIVL----ELIRPDPSVLKLEDNKGNTALHIAIKKG-RTQIVRC 348
              K +T  H+A + +N D  +     L    P +LK +D +GNT LHIA      + ++R 
Sbjct:   238 SK-ETVFHLAARNKNTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIAASVSCGSPLIRY 296

Query:   349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELF--SLL----KEAGAAHSK--DHGKPPSA 400
             ++  + ID+   N  G     +  +      F  S L    K +    SK  +  +P   
Sbjct:   297 IVGKKIIDIRDRNNMGYRAYHLLPRQAQDYEFISSYLRCDTKTSEEVDSKKAERNEPHIG 356

Query:   401 TKQLKQTVSDIKHDVQSQLQQSR-QTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIA 459
               ++ + +  I+       ++ + +                   L NA N+  +VAVLIA
Sbjct:   357 HSEVIRLLKLIEISTSEIAERKKSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIA 416

Query:   460 TVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXX 519
             +V++A     PG   ++   G   G++ +   AAF +F + +++ALF SL          
Sbjct:   417 SVSYAGGINPPGGVYQD---GPWKGKSLVGNTAAFKVFAICNNIALFTSLCIVILLVSII 473

Query:   520 XIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEH--SRWL-AVSATVIGG--TI 574
               + K  ++L+   +++MW++  F++ A+++ + V +     +RWL  V  +V GG  T+
Sbjct:   474 PYQRKPLKKLLVATHRMMWVSVGFMATAYVAASLVTIPHFPGTRWLFPVIISVAGGSLTV 533

Query:   575 MLTTIG 580
             + + +G
Sbjct:   534 LFSYLG 539

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: AT2G31820 ankyrin repeat family protein; ankyrin repeat family protein; FUNCTIONS IN- protein binding; LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Ankyrin (InterPro-IPR002110); BEST Arabidopsis thaliana protein match is- ankyrin repeat family protein (TAIR-AT1G05640.1); Has 55766 Blast hits to 22319 proteins in 769 species- Archae - 46; Bacteria - 3999; Metazoa - 28933; Fungi - 4871; Plants - 2904; Viruses - 619; Other Eukaryotes - 14394 (source- NCBI BLink). (662 aa) (Arabidopsis thaliana)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	630
pfam13962	114	pfam13962, PGG, Domain of unknown function	5e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-21
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-08
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-06
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	2e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	7e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
COG1914	416	COG1914, MntH, Mn2+ and Fe2+ transporters of the N	0.002
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  116 bits (293), Expect = 5e-31
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 443 GLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKN-AAFIIFFVFD 501
            L    NS  VVA LIATV FAA FT PG Y ++   G   G   +A     F  FFV +
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQD-DGGHHAGTPILAGKPRRFKAFFVSN 61

Query: 502 SLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVV 555
           ++A   SL  V++   +V    +   +L   +  L+WL+ L + +AF + +Y V
Sbjct: 62  TIAFVASLVAVILLLYIVPSFSRRLPRL-LALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  112 bits (282), Expect = 2e-29
 Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 3/124 (2%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319
            +G+T LH AA  GHLEVVK L+          D  G+T LH+A K  + +IV  L+   
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 320 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 379
             V    D  GNT LH+A + G   +V+ LL   G DVN+ +K G +PL +A K G+ E+
Sbjct: 64  ADV-NARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEV 121

Query: 380 FSLL 383
             LL
Sbjct: 122 VKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  110 bits (276), Expect = 2e-28
 Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 224 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
            D    T LH AA+ GH++VV  LLE  +++     N+G+T LH AA+ GHLE+VK L+ 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 284 KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 343
           K        DK G T LH+A +  N D+V  L++    V    D  G T LH+A K G  
Sbjct: 62  KGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHL 119

Query: 344 QIVRCLL 350
           ++V+ LL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  107 bits (268), Expect = 2e-27
 Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 3/125 (2%)

Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
            +G    H+AA  GHLEV+K LL    + V   D    T LH AA  GH+++V  LLE  
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           +++      +G T LH AAR G+L+VVK L+        R DK G+T LH+A K  + ++
Sbjct: 64  ADVNARD-KDGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEV 121

Query: 312 VLELI 316
           V  L+
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  104 bits (261), Expect = 1e-26
 Identities = 49/128 (38%), Positives = 79/128 (61%), Gaps = 4/128 (3%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL 214
           ++++G TPL++AA +GH  +V+ +L++      +    +G    H+AAK GHLE++K LL
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 215 GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 274
            +  + V   D   +T LH AA  G++DVV  LL+  +++      +G+T LH AA+ GH
Sbjct: 61  EKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD-KDGRTPLHLAAKNGH 118

Query: 275 LEVVKALV 282
           LEVVK L+
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 88.2 bits (219), Expect = 7e-21
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 292 TDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
            D+ G+T LH+A    + ++V  L+    D +    +DN G T LH+A K G  +IV+ L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVNA---KDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           L  +G DVN+ +K G +PL +A + GN ++  LL + GA
Sbjct: 60  LE-KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 84.1 bits (207), Expect = 3e-18
 Identities = 60/210 (28%), Positives = 79/210 (37%), Gaps = 11/210 (5%)

Query: 197 SFHVAAKQGHLEVLKELLGEFPNL--VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 254
           S  +   +  L++L   L    +L     +D   +  L  A           L  I    
Sbjct: 6   SALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRH 65

Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE----- 309
                 +G+  LHSAA  G  ++VK L++         D  G T LH+A    N      
Sbjct: 66  LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNI 124

Query: 310 DIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 367
           ++   L+    D  V  L D  GNT LH A   G   IV  LL   G D NS N  G + 
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTA 183

Query: 368 LDVAEKLGNTELFSLLKEAGAAHSKDHGKP 397
           LD A K G  EL  LL + G   S      
Sbjct: 184 LDPAAKNGRIELVKLLLDKGLHLSLLKFNL 213

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.8 bits (195), Expect = 5e-18
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 8/91 (8%)

Query: 198 FHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA 255
            H+AAK G+LE++K LL  G   NL  T      TALH AA  G++++V  LLE  +++ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT-----DTALHLAARNGNLEIVKLLLEHGADV- 54

Query: 256 KIARNNGKTVLHSAARMGHLEVVKALVSKDP 286
                +G T LH AAR G+LE+VK L+    
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 7/97 (7%)

Query: 266 LHSAARMGHLEVVKALVSKDPS-TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 324
           LH AA+ G+LE+VK L+ K        TD    TALH+A +  N +IV  L+     V  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 325 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 361
            +D  GNTALH+A + G  +IV+ LL   G D+N  +
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLE-HGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)

Query: 300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT--ALHIAIKKGRTQIVRCLLSIEGIDV 357
           LH+A K  N ++V  L+     V     N G+T  ALH+A + G  +IV+ LL   G DV
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV-----NLGDTDTALHLAARNGNLEIVKLLLE-HGADV 54

Query: 358 NSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           N+ +K G + L +A + GN E+  LL E GA
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 64.6 bits (158), Expect = 6e-13
 Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVM 222
           L++AA++G+  +V+ +L+      A +   +   + H+AA+ G+LE++K LL    + V 
Sbjct: 1   LHLAAKNGNLELVKLLLEK----GADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD-VN 55

Query: 223 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 254
             D   +TALH AA  G++++V  LLE  +++
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 12/109 (11%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           E   + ++    G   LHLAA+ G+L  V  +L+      A+D       +G TPL++AA
Sbjct: 28  ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK------DGNTPLHLAA 81

Query: 168 ESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELL 214
            +G+  +V+ +L+H     A + AR+  G    H+AAK GHLEV+K LL
Sbjct: 82  RNGNLDVVKLLLKHG----ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.0 bits (164), Expect = 9e-12
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 44/203 (21%)

Query: 132 NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA--ESGHALIVEEMLQH---MNLET 186
           NL+ V EI++      A   ++  +  G TPL  A   +S    IVE +L +   +N++ 
Sbjct: 81  NLTDVKEIVKLLLEYGA--NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN 138

Query: 187 ASIPARNGYDSFHVAAKQGH--LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV- 243
           +     +G +  H+  +     L++LK L+                          I+  
Sbjct: 139 S-----DGENLLHLYLESNKIDLKILKLLI-----------------DKGV----DINAK 172

Query: 244 --VNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTA 299
             VN+LL     +  I    G T LH A    + E VK L+    +P+     +K G T 
Sbjct: 173 NRVNYLLSYGVPI-NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL---VNKYGDTP 228

Query: 300 LHMAVKGQNEDIVLELIRPDPSV 322
           LH+A+   N++I   L+   PS+
Sbjct: 229 LHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
           D  G T LH+A   G  ++V+ LL   G DVN+ +  G +PL +A K G+ E+  LL E 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 387 GA-AHSKDH 394
           GA  +++D 
Sbjct: 63  GADVNARDK 71

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.1 bits (136), Expect = 5e-10
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 14/93 (15%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLAA+ GNL  V  +L+      A   L   +    T L++AA +G+  IV+ +L+H  
Sbjct: 1   LHLAAKNGNLELVKLLLE----KGADVNLGDTD----TALHLAARNGNLEIVKLLLEH-- 50

Query: 184 LETASI--PARNGYDSFHVAAKQGHLEVLKELL 214
              A +    ++G  + H+AA+ G+LE++K LL
Sbjct: 51  --GADVNAKDKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 70/277 (25%), Positives = 108/277 (38%), Gaps = 36/277 (12%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
            R  N + P  R    LH+  +  N   +            K+++   N+       VA 
Sbjct: 58  TRGHNVNQPDHRDLTPLHIICKEPNKLGM------------KEMIRSINKCSVFYTLVA- 104

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVA--------AKQGHLE--VLKELLGEF 217
                  +++   + N+E   I   N Y +            +K   +E  + K LL   
Sbjct: 105 -------IKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157

Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 277
            ++ M      +TALH A       +   LL   +N+    + N  + LH A +  +  +
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN-NSPLHHAVKHYNKPI 216

Query: 278 VKALVSKDPSTGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
           V  L+    ST  R DK G T LH++V   ++ DI+  L+     V       G TALH 
Sbjct: 217 VHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275

Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 373
           +IK  R      LL   G D+NSLN    +PL  A K
Sbjct: 276 SIKSER---KLKLLLEYGADINSLNSYKLTPLSSAVK 309

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 34/178 (19%)

Query: 230 TALHTAAAQGHID--VVNFLLE--IDSNLAKIARNN-GKTVLHSAARMGH--LEVVKALV 282
           T LH   +  +I+  V+  LL    D N    A +  G T L    +  +  +E+++ L+
Sbjct: 119 TPLHVYLSGFNINPKVIRLLLRKGADVN----ALDLYGMTPLAVLLKSRNANVELLRLLI 174

Query: 283 SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK----------LEDNKGNT 332
                  +  D + ++ LH           L+  +P   +++            D  GNT
Sbjct: 175 DAGADV-YAVDDRFRSLLH---------HHLQSFKPRARIVRELIRAGCDPAATDMLGNT 224

Query: 333 ALHIAIKKG--RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            LH        +  +V  LL I GI +N+ N+ G++PL  A    N      L   GA
Sbjct: 225 PLHSMATGSSCKRSLVLPLL-IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA 281

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 282
             TALH AA  G +++V +LLE   ++ +    +G T LH AA  G+LEV+K L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
           T LH AA  G LE+VK L+ K      RTD+ G TALH+A +  N +++  L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 58.3 bits (141), Expect = 9e-09
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 13/140 (9%)

Query: 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQ-SCDANEAKDLLSKKNQEGETPLYVAAE 168
           K + D    +G   LH+AA  G    V+ +L+ +C+ +        ++  G T L+ A  
Sbjct: 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH-------IRDANGNTALWNAIS 600

Query: 169 SGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC 228
           + H  I   +L H    + S P   G D    AAK+  L  +KELL +  N V + D   
Sbjct: 601 AKHHKIFR-ILYH--FASISDPHAAG-DLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQG 655

Query: 229 STALHTAAAQGHIDVVNFLL 248
           +TAL  A A+ H+D+V  L+
Sbjct: 656 ATALQVAMAEDHVDMVRLLI 675

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 39/238 (16%)

Query: 172 ALIVEEMLQHM----NLETASIPARNGYDSFHV--------AAKQGHLEVLKELL--GEF 217
            +I++  LQH     +L    +   NG +             A  G+  +L+ELL     
Sbjct: 491 VVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLD 550

Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 277
           P++    D    T LH AA++G+ D V  LL+   N+  I   NG T L +A    H ++
Sbjct: 551 PDI---GDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKI 606

Query: 278 VKALV----SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 333
            + L       DP             L  A K  +   + EL++   +V   ED++G TA
Sbjct: 607 FRILYHFASISDPHA-------AGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATA 658

Query: 334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 391
           L +A+ +    +VR LL + G DV+  N          +    TEL  LL++    HS
Sbjct: 659 LQVAMAEDHVDMVR-LLIMNGADVDKAN--------TDDDFSPTELRELLQKRELGHS 707

Length = 823

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 193 NGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
           +G     +A K    E +K L+  G  P+ V   D+   + LH A  +G +  V  LL++
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPD-VKYPDIE--SELHDAVEEGDVKAVEELLDL 90

Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNE 309
                 +   +G T LH A  +  L+++K L+++        TDK   + LH+AV   + 
Sbjct: 91  GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF--SPLHLAVMMGDI 148

Query: 310 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG 364
             + EL+    + L +ED  G T L IA+ KG   I + LL   G +++   K G
Sbjct: 149 KGI-ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNG 201

Length = 413

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 67/278 (24%), Positives = 96/278 (34%), Gaps = 67/278 (24%)

Query: 157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGE 216
            + E     AAE G    V   L+       + P R G  +  VAA +     L ELL  
Sbjct: 15  SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLN 74

Query: 217 FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--------------- 261
                   D    T LH A +  ++D V  +L     L    R +               
Sbjct: 75  LSCRGAVGD----TLLH-AISLEYVDAVEAILLH---LLAAFRKSGPLELANDQYTSEFT 126

Query: 262 -GKTVLHSAARMGHLEVVKALV----------------SKDPSTGFRTDKKGQTALHMAV 304
            G T LH AA   + E+VK L+                       F     G++ L+ A 
Sbjct: 127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY---HGESPLNAAA 183

Query: 305 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI---------KKGRTQI---------- 345
              +  IV  L   DP+ +   D+ GNT LH+ +         ++   Q+          
Sbjct: 184 CLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK 242

Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
           +R    +E I    LN  G +PL +A K G   LF L 
Sbjct: 243 LRDSKELEVI----LNHQGLTPLKLAAKEGRIVLFRLK 276

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 315 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 371
           L+   P  L   D  GNT LH+A K G  ++V+  L   G+D+N  +  G + LD+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQ-WLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 4e-08
 Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 14/183 (7%)

Query: 210 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 269
           + E+L E    V   D+ C T +H AA +G+  +VN LL   +++  IA  +  +VL  A
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIAL-DDLSVLECA 218

Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP--SVLKLED 327
               +++ +KA++    +       K   +L  A++  NED+   L+  D   SV  ++D
Sbjct: 219 VDSKNIDTIKAIIDNRSNI-----NKNDLSLLKAIR--NEDLETSLLLYDAGFSVNSIDD 271

Query: 328 NKGNTALHIAIKK-GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKE 385
            K NT LH A +    +++V  LL   G DVN+ N  GE+PL +  K G +TE    L  
Sbjct: 272 CK-NTPLHHASQAPSLSRLVPKLLE-RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM 329

Query: 386 AGA 388
            GA
Sbjct: 330 LGA 332

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.8 bits (134), Expect = 4e-08
 Identities = 79/277 (28%), Positives = 120/277 (43%), Gaps = 67/277 (24%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A++A +LSR++  L    A+     ++ KN +GETPLY+ A                
Sbjct: 277 LHHASQAPSLSRLVPKLLERGAD-----VNAKNIKGETPLYLMA---------------- 315

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA-QGHID 242
                   +NGYD+          E ++ L+    + V   D    T LH A+    + D
Sbjct: 316 --------KNGYDT----------ENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKD 356

Query: 243 VVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH 301
           +V  LLE+ +N+   AR+   KT +H AA   ++ ++  L+         + K G TALH
Sbjct: 357 IVITLLELGANVN--ARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALH 413

Query: 302 MAVKGQNEDIVLELIRPDPSVLKLEDNKGN---------TALHIAIKKG-RTQIVRCLLS 351
            A+ G N         P  SV  L D   N         T LH A KK  +  ++  LL 
Sbjct: 414 FALCGTN---------PYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD 464

Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
             G DVN++N   + PL +A  L    + ++L   GA
Sbjct: 465 -NGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGA 498

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL 248
           G  + H AA  G LE++K LL +  + +  TD   +TALH AA  G+++V+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 32/218 (14%)

Query: 197 SFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHI-----DVVNFLLE 249
             ++A +  +++V+K LL  G   N     +   ST LH  +   +      ++V  LLE
Sbjct: 38  PLYLAKEARNIDVVKILLDNGADINSSTKNN---STPLHYLSNIKYNLTDVKEIVKLLLE 94

Query: 250 IDSNLAKIARNNGKTVLHSAA--RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ 307
             +N+     NNG T L  A   +     +V+ L+    +   +    G+  LH+ ++  
Sbjct: 95  YGANVNAPD-NNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLESN 152

Query: 308 NEDI-VLELI-----------RPD-----PSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
             D+ +L+L+           R +        + ++D  G T LH A+     + V+ LL
Sbjct: 153 KIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL 212

Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              G + N +NK G++PL +A    N E+F LL   G 
Sbjct: 213 D-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 337
           L+   P     TD  G T LH+A K    ++V  L++P    L L D+ G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 51.9 bits (124), Expect = 5e-07
 Identities = 62/220 (28%), Positives = 93/220 (42%), Gaps = 27/220 (12%)

Query: 157 QEGETPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKEL 213
            E  TPL  A  SG A IVE  ++H   +N     IP          A K G  +++K L
Sbjct: 33  DETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIP-----HPLLTAIKIGAHDIIKLL 87

Query: 214 LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAAR 271
           +    N V T+ L               D++  +L+  ID N   I     KT LH A +
Sbjct: 88  I---DNGVDTSILPIPCI--------EKDMIKTILDCGIDVN---IKDAELKTFLHYAIK 133

Query: 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN 331
            G LE +K L           D  G   +H+A+K    DI+ +L+    +   ++DN G 
Sbjct: 134 KGDLESIKMLFEYGADVNIE-DDNGCYPIHIAIKHNFFDII-KLLLEKGAYANVKDNNGE 191

Query: 332 TALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 371
           + LH A + G    ++ L+   G  + +  K G +PL  A
Sbjct: 192 SPLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 298 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
           TALH A      ++V  L+     + +  D  GNTALHIA + G  ++++ LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 59/266 (22%), Positives = 108/266 (40%), Gaps = 48/266 (18%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A  A NL  V  +L +   N     +++ +    TPL++  +  + L ++EM++ +N
Sbjct: 41  LHQAVEARNLDVVKSLL-TRGHN-----VNQPDHRDLTPLHIICKEPNKLGMKEMIRSIN 94

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
             +         D+F+      ++E+ K +L      + T DL             +ID 
Sbjct: 95  KCSVFYTLVAIKDAFN----NRNVEIFKIILTNRYKNIQTIDLV------------YIDK 138

Query: 244 VNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA 303
            +    I++                       E+ K L+S       +   KG TALH A
Sbjct: 139 KSKDDIIEA-----------------------EITKLLLSYGADINMKDRHKGNTALHYA 175

Query: 304 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKA 363
            + +++ +   L+    +V  + D   N+ LH A+K     IV  LL   G   ++ +K 
Sbjct: 176 TENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDARDKC 233

Query: 364 GESPLDVA-EKLGNTELFSLLKEAGA 388
           G +PL ++     + ++  LL E G 
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGV 259

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 247 LLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA 303
           LLE           NG T LH AA+ G LE+V+ L+ K        D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 362
            GNT LH+A + G  ++V+ LL   G DVN+ +K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE-AGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 18/146 (12%)

Query: 250 IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 309
           + SNL  +A      +L         E++KA    DP  G   D KG+T LH+A     E
Sbjct: 525 MASNLLTVASTGNAALLE--------ELLKA--KLDPDIG---DSKGRTPLHIAASKGYE 571

Query: 310 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 369
           D VL L++   +V  + D  GNTAL  AI     +I R L     I   S   A    L 
Sbjct: 572 DCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASI---SDPHAAGDLLC 627

Query: 370 VAEKLGN-TELFSLLKEAGAAHSKDH 394
            A K  + T +  LLK+     S+DH
Sbjct: 628 TAAKRNDLTAMKELLKQGLNVDSEDH 653

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
           D  G T LHIA   G  Q+VR LL   G D   L+K G++PL++AE+ G  E+  LL   
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170

Query: 387 GAAHSK--DHGKPPSATKQ 403
              H +   + KP S T +
Sbjct: 171 SQCHFELGANAKPDSFTGK 189

Length = 664

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 6/58 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
           LHLAAR GNL  ++++L    A+     ++ K+++G T L++AA +G+  IV+ +L+H
Sbjct: 32  LHLAARNGNL-EIVKLLLEHGAD-----VNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 9e-06
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
           G TALH A   GR ++V+ LL  +G+D+N  ++ G + L +A + GN E+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 241 IDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKALVSKDPSTGFR-----TDK 294
           ++  +F+  ++  +A+  +N+ G+   H AAR G  +++                  TD 
Sbjct: 1   MESPHFMTCLEEMIAE--KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD 58

Query: 295 KGQTALHMAVKGQNEDIVLELIRP----DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
            GQ  +H+A +     +  E+I         +   E  +G+TALH+A  +    +   L 
Sbjct: 59  AGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLC 118

Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              GID++  N   +SP ++A    +  +  +L+E  A
Sbjct: 119 CQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA 156

Length = 169

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
           D + +T LH A+K  + + +  L      V  +ED+ G   +HIAIK     I++ LL  
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLE- 178

Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
           +G   N  +  GESPL  A + G+     LL
Sbjct: 179 KGAYANVKDNNGESPLHNAAEYGDYACIKLL 209

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 120 GDLQLHLAARAGNLSR----VMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIV 175
           GD  LHLAA  GN       V ++L   +A    D+ + ++++G TPL+ AA +G A IV
Sbjct: 106 GDTPLHLAALNGNPPEGNIEVAKLL--LEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 176 EEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL 214
           E +L+       +     G  +   AAK G +E++K LL
Sbjct: 164 ELLLEA--GADPNSRNSYGVTALDPAAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 68/282 (24%), Positives = 107/282 (37%), Gaps = 69/282 (24%)

Query: 104 IGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPL 163
                +K N + P + G   L +AA       + E+L +         LS +   G+T L
Sbjct: 36  DLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLN---------LSCRGAVGDTLL 86

Query: 164 YVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMT 223
           +  +       VE +L H+    A    R          +            EF     T
Sbjct: 87  HAISLEYVD-AVEAILLHL--LAA---FRKSGPLELANDQY---------TSEF-----T 126

Query: 224 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNNG--------KTVL-HSAARM- 272
             +   TALH AA + + ++V  LLE     A + AR  G             H  + + 
Sbjct: 127 PGI---TALHLAAHRQNYEIVKLLLE---RGASVPARACGDFFVKSQGVDSFYHGESPLN 180

Query: 273 -----GHLEVVKALVSKDPSTGFRTDKKGQTALHMAV-----KGQNE-------DIVLEL 315
                G   +V AL+S+DP+     D  G T LH+ V     K + E       +  L L
Sbjct: 181 AAACLGSPSIV-ALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSL 239

Query: 316 I-RPDPSVLKLED---NKGNTALHIAIKKGRTQIVRCLLSIE 353
           + +   S  +LE    ++G T L +A K+GR  + R  L+I+
Sbjct: 240 LDKLRDSK-ELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK 280

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD--SFHVAAKQGHLEVLKELL 214
           T L+ AA SG   +V+ +L+        I   +     + H+AA+ G+LEVLK LL
Sbjct: 3   TALHKAAISGRLELVKYLLEK----GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 10/173 (5%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +   P      +LH A   G++  V E+L       A D+  K    G TPL++A     
Sbjct: 62  DVKYPDIES--ELHDAVEEGDVKAVEELLDL--GKFADDVFYKD---GMTPLHLATILKK 114

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
             I++ ++         IP  + +   H+A   G ++ ++ L+     L +     C T 
Sbjct: 115 LDIMKLLIARG--ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGC-TP 171

Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
           L  A A+G I +   LL+  +N+    +N     L  A     +++V+  + +
Sbjct: 172 LIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 213 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLH 267
           LL   P  +  TD + +T LH AA  G +++V +LL+   +L  +  ++G T L 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALD 54

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 43/193 (22%), Positives = 92/193 (47%), Gaps = 16/193 (8%)

Query: 185 ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
           E  SIP    + + H A +   +++++E++ + P L+  TD  C + LHT     ++  +
Sbjct: 36  ENESIP----FTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDI 91

Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGH--LEVVKALVSKDPSTGFRTDKKGQTALHM 302
              L +D ++  I      +++ +  ++    + ++K  +S +       DK  ++  +M
Sbjct: 92  VISLTLDCDI--ILDIKYASIILNKHKLDEACIHILKEAISGND---IHYDKINESIEYM 146

Query: 303 -AVK---GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
             +K    Q+E ++ E++    + +  +D    T +H A ++G  ++V  LLS  G DVN
Sbjct: 147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY-GADVN 205

Query: 359 SLNKAGESPLDVA 371
            +     S L+ A
Sbjct: 206 IIALDDLSVLECA 218

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTD 293
           +G T LH AAR GHLEVVK L+        R  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG---HLEVVKALVSKDPSTGFRTDKKGQ 297
           ++++ FL+E  +++    R+N  + LH           E++K L+    S     D+ G+
Sbjct: 66  VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGK 124

Query: 298 TALHMAVKGQNE--DIVLELIRPDPSVLKLEDNKGNTALHIAIK-KGRTQIVRCLLSIEG 354
             LHM +   N   +++  LI    S L  +D   N  L+  I      +I   L S+ G
Sbjct: 125 NLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILYSYILFHSDKKIFDFLTSL-G 182

Query: 355 IDVNSLNKAGESPLDV 370
           ID+N  NK+G +  D+
Sbjct: 183 IDINETNKSGYNCYDL 198

Length = 209

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDP-SVLKL-----------EDNKGNTALHIAIKK 340
           ++ G+  +H+     N D        DP   LKL           E   GNT LHIA+  
Sbjct: 52  NRHGKQCVHIVS---NPDKA------DPQEKLKLLMEWGADINGKERVFGNTPLHIAVYT 102

Query: 341 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              ++   L +  G+++  LN A ++P  VA +  + ++ ++L+  GA
Sbjct: 103 QNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA 150

Length = 154

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)

Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTD---KKGQTALHMAVKGQNEDIVLELIR--PDP 320
           LH A   G ++ V+ L+       F  D   K G T LH+A   +  DI+  LI    DP
Sbjct: 72  LHDAVEEGDVKAVEELLD---LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
            +    +    + LH+A+  G  + +  L+  +   ++  +  G +PL +A   G+  + 
Sbjct: 129 DI---PNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAIC 184

Query: 381 SLLKEAGA 388
            +L ++GA
Sbjct: 185 KMLLDSGA 192

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 24/182 (13%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 288
           S  L      G I+ +  +++   N   I+ +   T L  A R G  ++V+  +      
Sbjct: 2   SQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI 61

Query: 289 GFRTDKKGQTALHMAVKGQNEDIVLELIRP--DPSVL--------------------KLE 326
               + K    L  A+K    DI+  LI    D S+L                     ++
Sbjct: 62  N-HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK 120

Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
           D +  T LH AIKKG  + ++ L    G DVN  +  G  P+ +A K    ++  LL E 
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK 179

Query: 387 GA 388
           GA
Sbjct: 180 GA 181

Length = 434

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 290 FRTDKKGQTALHMAVKGQNEDIVLE---LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
            R D  G+   HM       + V++   L+     +   E   GNT LHIA      ++ 
Sbjct: 51  HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELA 110

Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
             L    G+++ ++N   E+   +A K+ +  +  +L+  GA 
Sbjct: 111 EWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV 153

Length = 166

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 34/198 (17%)

Query: 223 TTDLSC--STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
           +T  S      LH A    ++DVV  LL    N+ +   +   T LH   +  +   +K 
Sbjct: 30  STSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPD-HRDLTPLHIICKEPNKLGMKE 88

Query: 281 LVS-KDPSTGFRTDKKGQTALH-----------MAVKGQNEDIVLELIRP-------DPS 321
           ++   +  + F T    + A +                  + I L  I         +  
Sbjct: 89  MIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAE 148

Query: 322 VLKL-----------EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 370
           + KL           + +KGNTALH A +    ++   LL   G +VN  +K   SPL  
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLHH 207

Query: 371 AEKLGNTELFSLLKEAGA 388
           A K  N  +  +L E GA
Sbjct: 208 AVKHYNKPIVHILLENGA 225

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA 235
            NG    H+AAK G LE+++ LL +    +   D    TAL  A
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNL 254
           T LH AA  GH++VV  LLE  +++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPS 287
           +G+T LH AA  G+LEVVK L+ K   
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
            G T LH+A + G  ++V+ LL  +G D+N
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLD-KGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
            GNT LH+A + G  ++V+ LL   G D+N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLE-HGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 9/181 (4%)

Query: 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEF 217
           E+ L+ A E G    VEE+L  +      +  ++G    H+A     L+++K L+  G  
Sbjct: 69  ESELHDAVEEGDVKAVEELLD-LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD 127

Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 277
           P+ +  TD    + LH A   G I  +  L++  + L  I    G T L  A   G + +
Sbjct: 128 PD-IPNTDKF--SPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAI 183

Query: 278 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALH 335
            K L+    +  +        AL  A++    DIV   I+   D +++ + + +  T L 
Sbjct: 184 CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILD 243

Query: 336 I 336
           +
Sbjct: 244 M 244

Length = 413

>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 429 VHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAI---FTVPGQYVEEKTEGFSLGQ 485
             K  + L+ L  S ++  I     + V +A +  AA     + P Q V +  + + L  
Sbjct: 220 GIKGEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLL- 278

Query: 486 AHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMW-----LA 540
           A +  +AAF++F V   LA  +S  VV      +V+E     ++     +L+      + 
Sbjct: 279 APLLGSAAFVLFGVA-LLAAGLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVP 337

Query: 541 CLFISIAFISLTYVVV 556
            L I I F     ++V
Sbjct: 338 GLAIIILFGDPARLLV 353

Length = 416

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           G   +H+A +  N   ++++L      E     + K+  GE+PL+ AAE G    ++ ++
Sbjct: 157 GCYPIHIAIKH-NFFDIIKLLL-----EKGAYANVKDNNGESPLHNAAEYGDYACIKLLI 210

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239
            H N        +NG+   H A    H     ELL    + +   D+  ST LH A    
Sbjct: 211 DHGN--HIMNKCKNGFTPLHNAII--HNRSAIELLINNAS-INDQDIDGSTPLHHAINPP 265

Query: 240 -HIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR-MGHLEVVKALVS 283
             ID+++ LL   ++++ I  N G+  + +A + +    V+K +++
Sbjct: 266 CDIDIIDILLYHKADIS-IKDNKGENPIDTAFKYINKDPVIKDIIA 310

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	630
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02917	661	ankyrin-like protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PF13962	113	PGG: Domain of unknown function	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.89
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
PHA02743	166	Viral ankyrin protein; Provisional	99.81
PHA02741	169	hypothetical protein; Provisional	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.72
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.7
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.62
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.6
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.6
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.57
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.56
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.47
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.31
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.3
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.2
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.2
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.2
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.18
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.17
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.17
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.12
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.12
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.05
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.57
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.51
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.47
PF13606	30	Ank_3: Ankyrin repeat	98.46
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.45
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.42
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.42
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.33
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.28
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.26
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.17
KOG0522	560	consensus Ankyrin repeat protein [General function	98.17
PF13606	30	Ank_3: Ankyrin repeat	98.16
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.11
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.04
KOG0522	560	consensus Ankyrin repeat protein [General function	98.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	97.89
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.85
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.84
KOG0511	516	consensus Ankyrin repeat protein [General function	97.73
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.68
KOG2384	223	consensus Major histocompatibility complex protein	97.68
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.51
KOG0511	516	consensus Ankyrin repeat protein [General function	97.37
KOG2384	223	consensus Major histocompatibility complex protein	97.26
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.69
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.51
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.23
KOG2505	591	consensus Ankyrin repeat protein [General function	95.19
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	94.94
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.86
KOG2505	591	consensus Ankyrin repeat protein [General function	92.81
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.54
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	85.41
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.0
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.11

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5e-38  Score=332.90  Aligned_cols=274  Identities=27%  Similarity=0.342  Sum_probs=152.5

Q ss_pred             cccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccc
Q 006802          109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETAS  188 (630)
Q Consensus       109 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~  188 (630)
                      .+++.+..|.++.+|||+|+..|+.++.+.|++.+.+      ++..|..|.||||+||..++.|..+.|++.  +++..
T Consensus       110 ~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d------vnl~de~~~TpLh~A~~~~~~E~~k~Li~~--~a~~~  181 (929)
T KOG0510|consen  110 YGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD------VNLEDENGFTPLHLAARKNKVEAKKELINK--GADPC  181 (929)
T ss_pred             cCCCCChhhhhccCchhhccccchHHHHHHHHHhcCC------ccccccCCCchhhHHHhcChHHHHHHHHhc--CCCCC
Confidence            3455555555666666666666666666666655432      445555556666666666666655555554  34444


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCC----CccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchh---------
Q 006802          189 IPARNGYDSFHVAAKQGHLEVLKELLGEFP----NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA---------  255 (630)
Q Consensus       189 ~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~----~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~---------  255 (630)
                      ..|.+|+.|+|.|+++|..|..+.++.+.+    .-++..+.++.||||.|+..|+.++++.+|+.|....         
T Consensus       182 K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q  261 (929)
T KOG0510|consen  182 KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQ  261 (929)
T ss_pred             cccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHH
Confidence            555555666666666666666655555211    1123344555566666666666666666655543221         


Q ss_pred             -----hhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhc-CCCCcccccCCC
Q 006802          256 -----KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNK  329 (630)
Q Consensus       256 -----~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~-~~~~~~n~~d~~  329 (630)
                           +..|.+|.||||+|++.|+.+.++.|+..|+++... +.++.||||.||.+|+.+.|+.||+ .+..++|..|..
T Consensus       262 ~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k-n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~  340 (929)
T KOG0510|consen  262 EKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK-NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH  340 (929)
T ss_pred             HHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc-CCCCCCchHHHHHcccHHHHHHHHhCcCcccccccccc
Confidence                 123455666666666666666666666666555544 5555666666666666666666655 444455555556


Q ss_pred             CChHHHHHHHhCcHHHHHHHhcccCCCcc---cccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 006802          330 GNTALHIAIKKGRTQIVRCLLSIEGIDVN---SLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  392 (630)
Q Consensus       330 G~TpLh~A~~~g~~~iv~~Ll~~~g~~in---~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~  392 (630)
                      |+||||+|+..|+.+++++|++ .|++.+   ..|.+|+||||+|+..|+..+++.|+.+||+...
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence            6666666666666666666665 455443   3355566666666666666666666666665543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=335.65  Aligned_cols=270  Identities=24%  Similarity=0.275  Sum_probs=239.3

Q ss_pred             ccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCc-----
Q 006802          110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL-----  184 (630)
Q Consensus       110 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~-----  184 (630)
                      ...++..+..|.||||.|++.|+.++|++|++.|.+      ++..+..|.||||.|+..|+.+++++|++++..     
T Consensus        25 ~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~------~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~   98 (434)
T PHA02874         25 GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD------INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILP   98 (434)
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcch
Confidence            455677888999999999999999999999998764      567788999999999999999999999987421     


Q ss_pred             ----------------cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHH
Q 006802          185 ----------------ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL  248 (630)
Q Consensus       185 ----------------~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL  248 (630)
                                      .+++..+..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+
T Consensus        99 ~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll  177 (434)
T PHA02874         99 IPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLL  177 (434)
T ss_pred             hccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHH
Confidence                            23456778899999999999999999999999988 4567899999999999999999999999


Q ss_pred             hcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCC
Q 006802          249 EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN  328 (630)
Q Consensus       249 ~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~  328 (630)
                      ++|+++ +..+..|.||||+|+..|+.+++++|++.+++.... +..|.||||.|+..+. +.+.+|+. +.++ +.+|.
T Consensus       178 ~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~-~~~g~TpL~~A~~~~~-~~i~~Ll~-~~~i-n~~d~  252 (434)
T PHA02874        178 EKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK-CKNGFTPLHNAIIHNR-SAIELLIN-NASI-NDQDI  252 (434)
T ss_pred             HCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHCCh-HHHHHHHc-CCCC-CCcCC
Confidence            999987 678899999999999999999999999999988765 8899999999999875 56666663 4544 88999


Q ss_pred             CCChHHHHHHHhC-cHHHHHHHhcccCCCcccccCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcc
Q 006802          329 KGNTALHIAIKKG-RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKEAGAAHSK  392 (630)
Q Consensus       329 ~G~TpLh~A~~~g-~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~-~~~iv~~L~~~ga~~~~  392 (630)
                      +|+||||+|+..+ +.+++++|++ .|++++.+|..|.||||+|++.+ ..++++.|+..++....
T Consensus       253 ~G~TpLh~A~~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~  317 (434)
T PHA02874        253 DGSTPLHHAINPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKE  317 (434)
T ss_pred             CCCCHHHHHHhcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhh
Confidence            9999999999876 7899999999 89999999999999999999987 67789999998876543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.3e-38  Score=334.27  Aligned_cols=300  Identities=26%  Similarity=0.312  Sum_probs=267.2

Q ss_pred             CCCCCCCcccccccccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHH
Q 006802           50 PSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAAR  129 (630)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~  129 (630)
                      ...+.+..+++.+.|++++-.+..+.++.|.+.+.+..+..+-+.             +.+.++|..|+.|.||||+||.
T Consensus        97 ~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll-------------~~~~dvnl~de~~~TpLh~A~~  163 (929)
T KOG0510|consen   97 EYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLL-------------DYGADVNLEDENGFTPLHLAAR  163 (929)
T ss_pred             hcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHH-------------HhcCCccccccCCCchhhHHHh
Confidence            336677778888999999988888889999888888766655322             3459999999999999999999


Q ss_pred             cCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhc---CCccccccCCCCCCcHHHHHHHcCC
Q 006802          130 AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGH  206 (630)
Q Consensus       130 ~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~---~~~~~~~~~~~~g~t~Lh~A~~~g~  206 (630)
                      .++.|..+.|++.+++      ..+.|.+|++|+|.|+++|..++.+.++.+   .....++..++.|.||||.|+..|+
T Consensus       164 ~~~~E~~k~Li~~~a~------~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~  237 (929)
T KOG0510|consen  164 KNKVEAKKELINKGAD------PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGD  237 (929)
T ss_pred             cChHHHHHHHHhcCCC------CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCC
Confidence            9999988999988765      577899999999999999999999999983   2345678889999999999999999


Q ss_pred             HHHHHHHHhcCCCc--------------cccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHc
Q 006802          207 LEVLKELLGEFPNL--------------VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM  272 (630)
Q Consensus       207 ~eiv~~Ll~~~~~~--------------~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~  272 (630)
                      .++++.+|+.+...              ++..|.+|.||||+|+++|+.+.++.|+..|++. +.++.++.||||.||..
T Consensus       238 ~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d~~spLH~AA~y  316 (929)
T KOG0510|consen  238 IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNKDEESPLHFAAIY  316 (929)
T ss_pred             HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCCCCCCchHHHHHc
Confidence            99999999988764              3456889999999999999999999999999998 77889999999999999


Q ss_pred             CCHHHHHHHHh-CCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCccc--ccCCCCChHHHHHHHhCcHHHHHHH
Q 006802          273 GHLEVVKALVS-KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK--LEDNKGNTALHIAIKKGRTQIVRCL  349 (630)
Q Consensus       273 g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n--~~d~~G~TpLh~A~~~g~~~iv~~L  349 (630)
                      |+++.|+.||+ .+.......|-.|.||||+|+++|+..+++.|+++|+...+  ..|.+|+||||+|+..|+..+|+.|
T Consensus       317 g~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~L  396 (929)
T KOG0510|consen  317 GRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKL  396 (929)
T ss_pred             ccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHH
Confidence            99999999999 55555556688999999999999999999999999998876  4599999999999999999999999


Q ss_pred             hcccCCCcccccCCCCCHHHH
Q 006802          350 LSIEGIDVNSLNKAGESPLDV  370 (630)
Q Consensus       350 l~~~g~~in~~n~~G~TpL~~  370 (630)
                      +. +|+++..+|+.|.+++|+
T Consensus       397 i~-~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  397 IS-HGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HH-cCCceeeccccccccccc
Confidence            99 999999999999999997

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.1e-38  Score=343.64  Aligned_cols=269  Identities=25%  Similarity=0.334  Sum_probs=249.3

Q ss_pred             cCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHH-----HHHhCCHHHHHHHHhcCCcc
Q 006802          111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYV-----AAESGHALIVEEMLQHMNLE  185 (630)
Q Consensus       111 ~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~-----Aa~~g~~eiv~~LL~~~~~~  185 (630)
                      ...+..+..|.||||.|++.|+.++|+.|++.|.+      ++..+..|.||||+     |+..|+.+++++|+++  +.
T Consensus        26 ~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~------~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~--ga   97 (480)
T PHA03100         26 DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD------INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY--GA   97 (480)
T ss_pred             ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC------CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHC--CC
Confidence            45556788999999999999999999999999764      56778889999999     9999999999999998  45


Q ss_pred             ccccCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcC--CHHHHHHHHhcCCchhhhhccC
Q 006802          186 TASIPARNGYDSFHVAA--KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIARNN  261 (630)
Q Consensus       186 ~~~~~~~~g~t~Lh~A~--~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~e~v~~LL~~~~~~~~~~d~~  261 (630)
                      +++..+..|.||||+|+  ..|+.+++++|++.+++ .+..+..|.||||+|+..|  +.+++++|+++|+++ +..+..
T Consensus        98 ~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~  175 (480)
T PHA03100         98 NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRY  175 (480)
T ss_pred             CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCC
Confidence            66888999999999999  99999999999999988 4567889999999999999  999999999999997 677889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCC------CchhhhhccCCC--HHHHHHhhcCCCCcccccCCCCChH
Q 006802          262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG------QTALHMAVKGQN--EDIVLELIRPDPSVLKLEDNKGNTA  333 (630)
Q Consensus       262 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g------~t~Lh~Aa~~g~--~~iv~~Ll~~~~~~~n~~d~~G~Tp  333 (630)
                      |.||||+|+..|+.+++++|++.++++... +..|      .||||.|+..++  .+++++|++.|.++ +.+|..|.||
T Consensus       176 g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~Tp  253 (480)
T PHA03100        176 GYTPLHIAVEKGNIDVIKFLLDNGADINAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVYGFTP  253 (480)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence            999999999999999999999999998765 7777      899999999999  99999999998876 8999999999


Q ss_pred             HHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 006802          334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  392 (630)
Q Consensus       334 Lh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~  392 (630)
                      ||+|+..|+.+++++|++ .|+|++.+|..|.||+++|+..++.+++++|+++|++...
T Consensus       254 L~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        254 LHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            999999999999999999 8999999999999999999999999999999999997653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-37  Score=339.32  Aligned_cols=271  Identities=19%  Similarity=0.256  Sum_probs=246.9

Q ss_pred             ccccCCCCCCCCCChHHHHHHHcC---CHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhC-CHHHHHHHHhcCC
Q 006802          108 ERKKNKDSPGKRGDLQLHLAARAG---NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG-HALIVEEMLQHMN  183 (630)
Q Consensus       108 ~~~~~~~~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g-~~eiv~~LL~~~~  183 (630)
                      +.+.+++..+..|.||||+|+..|   +.++++.|++.|.+      ++.++..|.||||+|+..| +.+++++|+++  
T Consensus        35 ~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad------in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~--  106 (471)
T PHA03095         35 AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD------VNAPERCGFTPLHLYLYNATTLDVIKLLIKA--  106 (471)
T ss_pred             HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHc--
Confidence            346788999999999999999999   99999999999765      6788899999999999999 59999999998  


Q ss_pred             ccccccCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcC--CHHHHHHHHhcCCchhhhhc
Q 006802          184 LETASIPARNGYDSFHVAA--KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIAR  259 (630)
Q Consensus       184 ~~~~~~~~~~g~t~Lh~A~--~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~e~v~~LL~~~~~~~~~~d  259 (630)
                      +.+++..+..|.||||+|+  ..++.+++++|++.+++ ++..|..|.||||+|+..+  +.+++++|+++|++... .|
T Consensus       107 ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d  184 (471)
T PHA03095        107 GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VD  184 (471)
T ss_pred             CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cC
Confidence            5677888999999999999  55689999999999988 5678899999999999866  68999999999999854 48


Q ss_pred             cCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCH--HHHHHhhcCCCCcccccCCCCChHHH
Q 006802          260 NNGKTVLHSAARM--GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE--DIVLELIRPDPSVLKLEDNKGNTALH  335 (630)
Q Consensus       260 ~~g~tpLh~Aa~~--g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~--~iv~~Ll~~~~~~~n~~d~~G~TpLh  335 (630)
                      ..|.||||.|+..  ++.++++.|++.+.++... |..|.||||+|+..++.  .++..|++.+.++ |.+|.+|+||||
T Consensus       185 ~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~-d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~di-n~~d~~g~TpLh  262 (471)
T PHA03095        185 DRFRSLLHHHLQSFKPRARIVRELIRAGCDPAAT-DMLGNTPLHSMATGSSCKRSLVLPLLIAGISI-NARNRYGQTPLH  262 (471)
T ss_pred             CCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHhcCCchHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence            9999999999975  7899999999999998875 99999999999999875  5788889888776 999999999999


Q ss_pred             HHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Q 006802          336 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  391 (630)
Q Consensus       336 ~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~  391 (630)
                      +|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|++.+++..
T Consensus       263 ~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        263 YAAVFNNPRACRRLIA-LGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            9999999999999999 899999999999999999999999999999999998753

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.9e-36  Score=326.26  Aligned_cols=273  Identities=14%  Similarity=0.199  Sum_probs=233.7

Q ss_pred             cccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhC--CHHHHHHHHhcCCccc
Q 006802          109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG--HALIVEEMLQHMNLET  186 (630)
Q Consensus       109 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g--~~eiv~~LL~~~~~~~  186 (630)
                      .+.+++.+|..|.||||+||..|+.++|+.|++.+++      ++.+|..|.||||+|+..+  ..+++++|+++  +.+
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd------in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~--Gad  132 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD------PNACDKQHKTPLYYLSGTDDEVIERINLLVQY--GAK  132 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC------CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCC
Confidence            5678899999999999999999999999999998764      6788999999999999876  48999999998  345


Q ss_pred             cc-cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcC--CHHHHHHHHhcCCchhhhhccCCC
Q 006802          187 AS-IPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIARNNGK  263 (630)
Q Consensus       187 ~~-~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~e~v~~LL~~~~~~~~~~d~~g~  263 (630)
                      ++ ..+.+|.|||| |+..|+.++++.|++.+.+ .+..|..|.||||+|+..+  +.+++++|++.|+++ +..|.+|.
T Consensus       133 in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~  209 (446)
T PHA02946        133 INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGN  209 (446)
T ss_pred             cccccCCCCCcHHH-HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCC
Confidence            55 35788999998 6677999999999999887 5678999999999998755  469999999999997 77899999


Q ss_pred             cHHHHHHHcC--CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC-HHHHHHhhcCCCCc------------------
Q 006802          264 TVLHSAARMG--HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN-EDIVLELIRPDPSV------------------  322 (630)
Q Consensus       264 tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~-~~iv~~Ll~~~~~~------------------  322 (630)
                      ||||+|+..|  +.+++++|+. +++++.. |..|.||||+|++.++ .++++.|+..+...                  
T Consensus       210 TpLH~Aa~~~~~~~~iv~lLl~-gadin~~-d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e  287 (446)
T PHA02946        210 TPLHIVCSKTVKNVDIINLLLP-STDVNKQ-NKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLE  287 (446)
T ss_pred             CHHHHHHHcCCCcHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHH
Confidence            9999999986  7899999995 7777654 9999999999999988 58899998886532                  


Q ss_pred             -cccc-CCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCch
Q 006802          323 -LKLE-DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSA  400 (630)
Q Consensus       323 -~n~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~  400 (630)
                       ++.. +..|.||||+|+..|+.++|++|++ .|       ..|+||||+|+..++.+++++|+.+|++.... ..+.++
T Consensus       288 ~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~-~~-------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~  358 (446)
T PHA02946        288 IINDKGKQYDSTDFKMAVEVGSIRCVKYLLD-ND-------IICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTC  358 (446)
T ss_pred             HHHHcCcccCCCHHHHHHHcCCHHHHHHHHH-CC-------CccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccH
Confidence             1122 2357899999999999999999999 54       35799999999999999999999999998875 456676


Q ss_pred             HHH
Q 006802          401 TKQ  403 (630)
Q Consensus       401 ~~~  403 (630)
                      ...
T Consensus       359 l~~  361 (446)
T PHA02946        359 MSE  361 (446)
T ss_pred             HHH
Confidence            543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.8e-37  Score=330.91  Aligned_cols=296  Identities=16%  Similarity=0.153  Sum_probs=254.5

Q ss_pred             cccccccccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCC--HH
Q 006802           57 EKQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGN--LS  134 (630)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~--~~  134 (630)
                      .+.+..+|++++.++..|.|++|.+...+..+..+.+.             +.+++++.+|..|.||||+|+..++  .+
T Consensus        55 v~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL-------------~~GAdin~~d~~g~TpLh~A~~~~~~~~e  121 (446)
T PHA02946         55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLL-------------THGADPNACDKQHKTPLYYLSGTDDEVIE  121 (446)
T ss_pred             HHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-------------HCcCCCCCCCCCCCCHHHHHHHcCCchHH
Confidence            45567889999999999999999999999877665332             3567899999999999999998764  88


Q ss_pred             HHHHHHHhcChhhhhHHhh-cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcC--CHHHHH
Q 006802          135 RVMEILQSCDANEAKDLLS-KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG--HLEVLK  211 (630)
Q Consensus       135 ~v~~Ll~~~~~~~~~~~l~-~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~eiv~  211 (630)
                      +++.|++.+++      ++ ..|..|.|||| |+..|+.+++++|++.  +.+.+..|..|.||||+|+..+  +.++++
T Consensus       122 ~v~lLl~~Gad------in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~--gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        122 RINLLVQYGAK------INNSVDEEGCGPLL-ACTDPSERVFKKIMSI--GFEARIVDKFGKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             HHHHHHHcCCC------cccccCCCCCcHHH-HHHCCChHHHHHHHhc--cccccccCCCCCCHHHHHHHhcCCCHHHHH
Confidence            99999998864      34 46889999998 6778999999999997  5677888999999999998765  469999


Q ss_pred             HHHhcCCCccccCCCCCChHHHHHHHcC--CHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC-HHHHHHHHhCCCCC
Q 006802          212 ELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH-LEVVKALVSKDPST  288 (630)
Q Consensus       212 ~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~-~~iv~~Ll~~~~~~  288 (630)
                      +|++.+.+ ++..|..|.||||+|+..|  +.+++++|++ |+++ +..|..|.||||+|+..++ .++++.|++.+...
T Consensus       193 ~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadi-n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        193 WMMKLGIS-PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDV-NKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             HHHHcCCC-CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCC-CCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            99999988 5678899999999999986  8899999985 7776 7789999999999999988 58999999987643


Q ss_pred             Cc--------------------ccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHH
Q 006802          289 GF--------------------RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  348 (630)
Q Consensus       289 ~~--------------------~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~  348 (630)
                      ..                    .-+..|.||||+|+.+|+.+++++|++++.        +|.||||+|+..++.+++++
T Consensus       270 ~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~~~~~v~~  341 (446)
T PHA02946        270 TDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSEYETMVDY  341 (446)
T ss_pred             CCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhCHHHHHHH
Confidence            11                    012357799999999999999999998753        57999999999999999999


Q ss_pred             HhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       349 Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      |+. +|+++|.. ..|.||||+|+..++.++++.|+.+.
T Consensus       342 Ll~-~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~  378 (446)
T PHA02946        342 LLF-NHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHN  378 (446)
T ss_pred             HHH-CCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcC
Confidence            999 89999996 58999999999999999999999854

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.1e-37  Score=348.81  Aligned_cols=284  Identities=20%  Similarity=0.201  Sum_probs=179.2

Q ss_pred             cccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCc----
Q 006802          109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL----  184 (630)
Q Consensus       109 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~----  184 (630)
                      .+.+++.+|..|.||||+||+.|+.++|++|++.|++      ++..+..|.||||+|+..|+.+++++|++....    
T Consensus       167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad------~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~  240 (682)
T PHA02876        167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD------VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKN  240 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC------cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Confidence            3455666666666666666666666666666666543      344556666666666666666666666664211    


Q ss_pred             -----------------------cccccCCCCCCcHHHHHHHcCCH-HHHHHHHhcCCCccccCCCCCChHHHHHHHcC-
Q 006802          185 -----------------------ETASIPARNGYDSFHVAAKQGHL-EVLKELLGEFPNLVMTTDLSCSTALHTAAAQG-  239 (630)
Q Consensus       185 -----------------------~~~~~~~~~g~t~Lh~A~~~g~~-eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g-  239 (630)
                                             .+.+..+..|.||||+|+..|+. ++++.|++.+.+ ++..|..|.||||+|+..| 
T Consensus       241 ~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad-in~~d~~g~TpLh~Aa~~g~  319 (682)
T PHA02876        241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD-VNAKNIKGETPLYLMAKNGY  319 (682)
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCC
Confidence                                   12233445566666666666664 466666666655 3445666666666666666 


Q ss_pred             CHHHHHHHHhcCCchhhhhccCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcC
Q 006802          240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM-GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP  318 (630)
Q Consensus       240 ~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~  318 (630)
                      +.++++.|+..|+++ +..|..|.||||+|+.. ++.++++.|++.+.+++.. |..|.||||+|+..|+.+++++|++.
T Consensus       320 ~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~-d~~G~TpLh~Aa~~~~~~iv~~Ll~~  397 (682)
T PHA02876        320 DTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGANVNAR-DYCDKTPIHYAAVRNNVVIINTLLDY  397 (682)
T ss_pred             CHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            466666666666665 45566666666666664 3566666666666666554 66677777777777777777777766


Q ss_pred             CCCcccccCCCCChHHHHHHHhCc-HHHHHHHhcccCCCcccccCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcccCCC
Q 006802          319 DPSVLKLEDNKGNTALHIAIKKGR-TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKEAGAAHSKDHGK  396 (630)
Q Consensus       319 ~~~~~n~~d~~G~TpLh~A~~~g~-~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~-~~~iv~~L~~~ga~~~~~~~~  396 (630)
                      ++++ +..+..|.||||+|+..++ ..++++|++ .|+++|.+|..|+||||+|+..+ +.+++++|+++|++....+..
T Consensus       398 gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~-~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~  475 (682)
T PHA02876        398 GADI-EALSQKIGTALHFALCGTNPYMSVKTLID-RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQ  475 (682)
T ss_pred             CCCc-cccCCCCCchHHHHHHcCCHHHHHHHHHh-CCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCC
Confidence            6654 5666666677777665544 345666666 66777777777777777776654 466777777777776666666


Q ss_pred             CCchHHH
Q 006802          397 PPSATKQ  403 (630)
Q Consensus       397 ~~~~~~~  403 (630)
                      +.+|...
T Consensus       476 g~tpl~~  482 (682)
T PHA02876        476 NQYPLLI  482 (682)
T ss_pred             CCCHHHH
Confidence            6665543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=7.6e-37  Score=338.86  Aligned_cols=270  Identities=20%  Similarity=0.176  Sum_probs=229.8

Q ss_pred             cCCCCC-CCCCChHHHHHHH--cCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCC--HHHHHHHHhcCCcc
Q 006802          111 KNKDSP-GKRGDLQLHLAAR--AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH--ALIVEEMLQHMNLE  185 (630)
Q Consensus       111 ~~~~~~-~~~g~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~--~eiv~~LL~~~~~~  185 (630)
                      .+++.+ +..|.||||.|+.  .++.+++++|++.|.+      ++.+|..|.||||+|+..|+  .++|++|+++  ++
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD------VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~--GA  238 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN------VNLQNNHLITPLHTYLITGNVCASVIKKIIEL--GG  238 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHc--CC
Confidence            778888 8999999999865  4678999999998764      68889999999999999995  5999999998  57


Q ss_pred             ccccCCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCccccCCCCC
Q 006802          186 TASIPARNGYDSFHVA-------------------------------------AKQGHLEVLKELLGEFPNLVMTTDLSC  228 (630)
Q Consensus       186 ~~~~~~~~g~t~Lh~A-------------------------------------~~~g~~eiv~~Ll~~~~~~~~~~d~~g  228 (630)
                      +++.++..|.||||+|                                     +..|+.++++.|++.+++ ++..|..|
T Consensus       239 DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G  317 (764)
T PHA02716        239 DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK-LHYKDSAG  317 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCC
Confidence            7888999999999975                                     445788999999999988 56779999


Q ss_pred             ChHHHHHHH--cCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHH--------------cCCHHHHHHHHhCCCCCCccc
Q 006802          229 STALHTAAA--QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR--------------MGHLEVVKALVSKDPSTGFRT  292 (630)
Q Consensus       229 ~tpL~~Aa~--~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~--------------~g~~~iv~~Ll~~~~~~~~~~  292 (630)
                      .||||+|+.  .++.+++++|+++|+++ +..|..|+||||+|+.              .++.+++++|++.|+++... 
T Consensus       318 ~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k-  395 (764)
T PHA02716        318 RTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV-  395 (764)
T ss_pred             CCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCc-
Confidence            999999864  46899999999999987 7789999999999875              37899999999999998865 


Q ss_pred             CCCCCchhhh----hccCCCHHHHHHhhcCCCC-----------------------------------------------
Q 006802          293 DKKGQTALHM----AVKGQNEDIVLELIRPDPS-----------------------------------------------  321 (630)
Q Consensus       293 d~~g~t~Lh~----Aa~~g~~~iv~~Ll~~~~~-----------------------------------------------  321 (630)
                      |..|+||||.    |...++.+++++|++.+..                                               
T Consensus       396 n~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~  475 (764)
T PHA02716        396 NCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTK  475 (764)
T ss_pred             CCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccc
Confidence            9999999994    2335678888888774310                                               


Q ss_pred             -------------cccccCCCCChHHHHHHHhCcH-----HHHHHHhcccCCCcccccCCCCCHHHHHHHcCCH-----H
Q 006802          322 -------------VLKLEDNKGNTALHIAIKKGRT-----QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT-----E  378 (630)
Q Consensus       322 -------------~~n~~d~~G~TpLh~A~~~g~~-----~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~-----~  378 (630)
                                   .+|..|..|+||||+|+..|+.     +++++|++ .|+|+|.+|+.|+||||+|++.|+.     +
T Consensus       476 ~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GADIN~~d~~G~TPLh~A~~~g~~~~~~~e  554 (764)
T PHA02716        476 IHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQYNINIPTKNGVTPLMLTMRNNRLSGHQWY  554 (764)
T ss_pred             cchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCccccHHH
Confidence                         0144578899999999999876     55699998 8999999999999999999999966     9


Q ss_pred             HHHHHHHcCCCCcc
Q 006802          379 LFSLLKEAGAAHSK  392 (630)
Q Consensus       379 iv~~L~~~ga~~~~  392 (630)
                      +++.|+++|++...
T Consensus       555 Ivk~LL~~ga~~~~  568 (764)
T PHA02716        555 IVKNILDKRPNVDI  568 (764)
T ss_pred             HHHHHHhcCCCcch
Confidence            99999999988653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-36  Score=326.57  Aligned_cols=270  Identities=23%  Similarity=0.308  Sum_probs=242.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHH
Q 006802          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (630)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A  201 (630)
                      ..|+.|+..|+.+.|+.|++..+.     .++..+..|.||||.|+..|+.++|++|++.  +.+++..+..|.||||.|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~-----~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~--Ga~~n~~~~~~~t~L~~A   75 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGN-----CINISVDETTTPLIDAIRSGDAKIVELFIKH--GADINHINTKIPHPLLTA   75 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHH
Confidence            469999999999999999987653     2567788999999999999999999999998  456677888999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCc----------------------cccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhc
Q 006802          202 AKQGHLEVLKELLGEFPNL----------------------VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR  259 (630)
Q Consensus       202 ~~~g~~eiv~~Ll~~~~~~----------------------~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d  259 (630)
                      +..|+.+++++|++.+.+.                      ++..+..|.||||+|+..|+.+++++|+++|+++ +..|
T Consensus        76 ~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d  154 (434)
T PHA02874         76 IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIED  154 (434)
T ss_pred             HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcC
Confidence            9999999999999887543                      3456788999999999999999999999999987 7789


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHH
Q 006802          260 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  339 (630)
Q Consensus       260 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~  339 (630)
                      .+|.||||+|+..|+.+++++|++.+++.... +..|.||||+|+..|+.+++++|++.++++ +.++..|.||||.|+.
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~-~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLIDHGNHI-MNKCKNGFTPLHNAII  232 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999988765 899999999999999999999999999876 7889999999999999


Q ss_pred             hCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          340 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       340 ~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~-~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      .+. +.+.+|+  .|++++.+|..|.||||+|+..+ +.+++++|+++|++....+..+.+|....
T Consensus       233 ~~~-~~i~~Ll--~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A  295 (434)
T PHA02874        233 HNR-SAIELLI--NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA  295 (434)
T ss_pred             CCh-HHHHHHH--cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            875 5677776  47899999999999999999875 78999999999999999999898887654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=338.76  Aligned_cols=313  Identities=22%  Similarity=0.217  Sum_probs=273.1

Q ss_pred             ccccccccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHH
Q 006802           58 KQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVM  137 (630)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~  137 (630)
                      +.+..+|++++.++..|.+++|.+...|..+..+.+.             +.+++++..+..|.||||+|+..|+.++++
T Consensus       162 k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL-------------~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk  228 (682)
T PHA02876        162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLL-------------SYGADVNIIALDDLSVLECAVDSKNIDTIK  228 (682)
T ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-------------HCCCCcCccCCCCCCHHHHHHHcCCHHHHH
Confidence            4556789999999999999999999999887776432             356788889999999999999999999999


Q ss_pred             HHHHhcChhhh-----------------------hHHhhcCCCCCCcHHHHHHHhCCH-HHHHHHHhcCCccccccCCCC
Q 006802          138 EILQSCDANEA-----------------------KDLLSKKNQEGETPLYVAAESGHA-LIVEEMLQHMNLETASIPARN  193 (630)
Q Consensus       138 ~Ll~~~~~~~~-----------------------~~~l~~~n~~g~TpLh~Aa~~g~~-eiv~~LL~~~~~~~~~~~~~~  193 (630)
                      .|++.+.....                       +..++..+..|.||||+|+..|+. +++++|++.  +.+++..+.+
T Consensus       229 ~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~--gadin~~d~~  306 (682)
T PHA02876        229 AIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER--GADVNAKNIK  306 (682)
T ss_pred             HHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC--CCCCCCcCCC
Confidence            99976543110                       112456678899999999999996 689999987  5677888999


Q ss_pred             CCcHHHHHHHcC-CHHHHHHHHhcCCCccccCCCCCChHHHHHHHc-CCHHHHHHHHhcCCchhhhhccCCCcHHHHHHH
Q 006802          194 GYDSFHVAAKQG-HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ-GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR  271 (630)
Q Consensus       194 g~t~Lh~A~~~g-~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~-g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~  271 (630)
                      |.||||+|+..| +.++++.|+..+.+ .+..|..|.||||+|+.. ++.++++.|++.|+++ +..|..|.||||+|+.
T Consensus       307 g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        307 GETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGANV-NARDYCDKTPIHYAAV  384 (682)
T ss_pred             CCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCCCCCHHHHHHH
Confidence            999999999999 69999999999988 557889999999999985 5789999999999997 7789999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC-HHHHHHhhcCCCCcccccCCCCChHHHHHHHhC-cHHHHHHH
Q 006802          272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN-EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG-RTQIVRCL  349 (630)
Q Consensus       272 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~-~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g-~~~iv~~L  349 (630)
                      .|+.+++++|++.++++... +..|.||||+|+..++ ..+++.|++.+.++ |.+|.+|+||||+|+..| +.+++++|
T Consensus       385 ~~~~~iv~~Ll~~gad~~~~-~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadi-n~~d~~G~TpLh~Aa~~~~~~~iv~lL  462 (682)
T PHA02876        385 RNNVVIINTLLDYGADIEAL-SQKIGTALHFALCGTNPYMSVKTLIDRGANV-NSKNKDLSTPLHYACKKNCKLDVIEML  462 (682)
T ss_pred             cCCHHHHHHHHHCCCCcccc-CCCCCchHHHHHHcCCHHHHHHHHHhCCCCC-CcCCCCCChHHHHHHHhCCcHHHHHHH
Confidence            99999999999999998875 8899999999997665 56789999998876 999999999999999977 68999999


Q ss_pred             hcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 006802          350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  392 (630)
Q Consensus       350 l~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~  392 (630)
                      ++ .|+++|.+|..|.|||++|+..+  +++++|+.+|++...
T Consensus       463 l~-~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~~~a~~~~  502 (682)
T PHA02876        463 LD-NGADVNAINIQNQYPLLIALEYH--GIVNILLHYGAELRD  502 (682)
T ss_pred             HH-CCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHHCCCCCCc
Confidence            99 89999999999999999999865  689999999998753

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.1e-35  Score=294.94  Aligned_cols=238  Identities=18%  Similarity=0.179  Sum_probs=208.4

Q ss_pred             cCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHH
Q 006802          130 AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEV  209 (630)
Q Consensus       130 ~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~ei  209 (630)
                      .++.+++++|++.+.        +.+|..|.||||+|+..|+.++++.|++++  .+.+.  .+|.||||+|+..|+.++
T Consensus         9 ~~~~~~~~~Lis~~a--------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~g--a~~n~--~d~~TpLh~Aa~~g~~ei   76 (284)
T PHA02791          9 WKSKQLKSFLSSKDA--------FKADVHGHSALYYAIADNNVRLVCTLLNAG--ALKNL--LENEFPLHQAATLEDTKI   76 (284)
T ss_pred             cCHHHHHHHHHhCCC--------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCc--CCCcC--CCCCCHHHHHHHCCCHHH
Confidence            467899999998754        357899999999999999999999999984  33333  357899999999999999


Q ss_pred             HHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCC-CcHHHHHHHcCCHHHHHHHHhCCCCC
Q 006802          210 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNG-KTVLHSAARMGHLEVVKALVSKDPST  288 (630)
Q Consensus       210 v~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g-~tpLh~Aa~~g~~~iv~~Ll~~~~~~  288 (630)
                      ++.|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|+++ +..+..| .||||+|+..|+.+++++|++.+++.
T Consensus        77 V~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~  154 (284)
T PHA02791         77 VKILLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  154 (284)
T ss_pred             HHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence            9999999887 4668899999999999999999999999999987 5567777 48999999999999999999987754


Q ss_pred             CcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChH-HHHHHHhCcHHHHHHHhcccCCCcccccCCCCCH
Q 006802          289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA-LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP  367 (630)
Q Consensus       289 ~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp-Lh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~Tp  367 (630)
                      ..  ...|.||||+|++.|+.++++.|++.++++ +.+|..|.|| ||+|+..|+.++|++|++ +|+++|.+|..| +|
T Consensus       155 ~d--~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~~~~~-~~  229 (284)
T PHA02791        155 FD--LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSVNLEN-VL  229 (284)
T ss_pred             cc--cccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCcccC-cc
Confidence            31  135899999999999999999999999876 8899999987 999999999999999999 899999999955 66


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcc
Q 006802          368 LDVAEKLGNTELFSLLKEAGAAHSK  392 (630)
Q Consensus       368 L~~A~~~~~~~iv~~L~~~ga~~~~  392 (630)
                      |      ++.|++++|+++-++...
T Consensus       230 l------~~~e~~~~ll~~~~~~~~  248 (284)
T PHA02791        230 L------DDAEIAKMIIEKHVEYKS  248 (284)
T ss_pred             C------CCHHHHHHHHHhhhhhcc
Confidence            6      788999999999887543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.7e-35  Score=321.03  Aligned_cols=267  Identities=24%  Similarity=0.306  Sum_probs=155.9

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 006802          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (630)
Q Consensus       116 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~  195 (630)
                      .+..+.||||.||+.|+.++|+.|++.+.+      ++.+|..|.||||+||..|+.+++++|++.......    ..+.
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad------vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~  102 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHN------VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTL  102 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccch
Confidence            456789999999999999999999998764      678899999999999999999999999997432222    5678


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcC--CHHHHHHHHhcCCchhhhhccC-CCcHHHHHHHc
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARM  272 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~e~v~~LL~~~~~~~~~~d~~-g~tpLh~Aa~~  272 (630)
                      +|++.|+..++.++++.|+..+.......+   ...+..+...+  +.+++++|+++|+++ +..+.+ |.||||+|+..
T Consensus       103 ~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~  178 (477)
T PHA02878        103 VAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATEN  178 (477)
T ss_pred             hhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhC
Confidence            999999999998888777765322110000   00011100111  123555555555444 333333 55555555555


Q ss_pred             CCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHh-CcHHHHHHHhc
Q 006802          273 GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK-GRTQIVRCLLS  351 (630)
Q Consensus       273 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~-g~~~iv~~Ll~  351 (630)
                      |+.+++++|++.+++++.. |..|.||||.|++.++.++++.|++.++++ +.+|..|+||||+|+.. ++.+++++|++
T Consensus       179 ~~~~iv~~Ll~~gad~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~  256 (477)
T PHA02878        179 KDQRLTELLLSYGANVNIP-DKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLE  256 (477)
T ss_pred             CCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHH
Confidence            5555555555555444332 444555555555555555555555544443 44455555555555443 34455555554


Q ss_pred             ccCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchH
Q 006802          352 IEGIDVNSLNK-AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSAT  401 (630)
Q Consensus       352 ~~g~~in~~n~-~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~  401 (630)
                       .|+++|.++. .|.||||+|  .++.+++++|+++|+++...+..+.+|.
T Consensus       257 -~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL  304 (477)
T PHA02878        257 -HGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPL  304 (477)
T ss_pred             -cCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence             4555554443 455555555  3344455555555555544444444443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=312.18  Aligned_cols=253  Identities=20%  Similarity=0.233  Sum_probs=225.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 006802          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (630)
Q Consensus       120 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh  199 (630)
                      .+++||.|++.|+.+++++|++.|.+      .+..+..|.||||+|+..|+.+++++|++++  ...+..+.++.||||
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~------~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~~t~L~   73 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN------PNFEIYDGISPIKLAMKFRDSEAIKLLMKHG--AIPDVKYPDIESELH   73 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccCCCcccHHH
Confidence            57899999999999999999998764      4567788999999999999999999999984  455666788999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHH
Q 006802          200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK  279 (630)
Q Consensus       200 ~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~  279 (630)
                      .|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999998877777788999999999999999999999999987 778899999999999999999999


Q ss_pred             HHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCC-ChHHHHHHHhCcHHHHHHHhcccCCCcc
Q 006802          280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG-NTALHIAIKKGRTQIVRCLLSIEGIDVN  358 (630)
Q Consensus       280 ~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G-~TpLh~A~~~g~~~iv~~Ll~~~g~~in  358 (630)
                      +|++.+++.... |..|.||||+|+..|+.+++++|++.|+++ +..+.+| .||+|+|+..|+.+++++|++ .|+|+|
T Consensus       153 ~Ll~~g~~~~~~-d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~-n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~gad~n  229 (413)
T PHA02875        153 LLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIK-RGADCN  229 (413)
T ss_pred             HHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CcCCCCCCchHHHHHHHcCCHHHHHHHHH-CCcCcc
Confidence            999999988765 999999999999999999999999999987 7777776 589999999999999999999 899998


Q ss_pred             cc---cCCCCCHHHHHHHc---CCHHHHHHHH
Q 006802          359 SL---NKAGESPLDVAEKL---GNTELFSLLK  384 (630)
Q Consensus       359 ~~---n~~G~TpL~~A~~~---~~~~iv~~L~  384 (630)
                      ..   +..|.||++++...   ...+.++.++
T Consensus       230 ~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        230 IMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             hHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            65   67899999987654   2344444444

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=315.86  Aligned_cols=267  Identities=23%  Similarity=0.274  Sum_probs=242.8

Q ss_pred             HHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhC---CHHHHHHHHhcCCccccccCCCCCCcHHHHH
Q 006802          125 HLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG---HALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (630)
Q Consensus       125 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g---~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A  201 (630)
                      ..++..++.++|+.|++.|.+      ++..+..|.||||+|+..|   +.+++++|++.  +.+++..+..|.||||+|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~------vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~--Gadin~~~~~g~TpLh~A   90 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD------VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA--GADVNAPERCGFTPLHLY   90 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC------cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC--CCCCCCCCCCCCCHHHHH
Confidence            456777899999999999764      6788999999999999999   99999999998  577888889999999999


Q ss_pred             HHcC-CHHHHHHHHhcCCCccccCCCCCChHHHHHH--HcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC--CHH
Q 006802          202 AKQG-HLEVLKELLGEFPNLVMTTDLSCSTALHTAA--AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG--HLE  276 (630)
Q Consensus       202 ~~~g-~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa--~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~  276 (630)
                      +..| +.+++++|++.+.+ ++..|..|.||||+|+  ..++.+++++|+++|+++ +..|..|.||||+|+..+  +.+
T Consensus        91 ~~~~~~~~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~  168 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVE  168 (471)
T ss_pred             HHcCCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHH
Confidence            9999 59999999999998 5678889999999999  567899999999999997 778999999999999876  689


Q ss_pred             HHHHHHhCCCCCCcccCCCCCchhhhhccC--CCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcH--HHHHHHhcc
Q 006802          277 VVKALVSKDPSTGFRTDKKGQTALHMAVKG--QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT--QIVRCLLSI  352 (630)
Q Consensus       277 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~--g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~--~iv~~Ll~~  352 (630)
                      ++++|++.+++.... |..|.||||.|+..  ++.++++.|++.+.++ +.+|..|+||||+|+..|+.  .+++.|++ 
T Consensus       169 iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-  245 (471)
T PHA03095        169 LLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDMLGNTPLHSMATGSSCKRSLVLPLLI-  245 (471)
T ss_pred             HHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCchHHHHHHHHH-
Confidence            999999999999877 99999999999864  7889999999999886 89999999999999999975  68888888 


Q ss_pred             cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       353 ~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      .|+++|.+|..|.||||+|+..|+.+++++|+++||++...+..+.+|....
T Consensus       246 ~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A  297 (471)
T PHA03095        246 AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM  297 (471)
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            8999999999999999999999999999999999999999888888887653

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.3e-34  Score=312.18  Aligned_cols=268  Identities=19%  Similarity=0.216  Sum_probs=229.5

Q ss_pred             ccccCCCCCCCCCChHHHHHHHcC--CHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhC------CHHHHHHHH
Q 006802          108 ERKKNKDSPGKRGDLQLHLAARAG--NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG------HALIVEEML  179 (630)
Q Consensus       108 ~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g------~~eiv~~LL  179 (630)
                      +.+.+++.. ..|.||||.++..+  +.++|+.|++.|++      ++.++ .+.||||.|+..+      +.++|++|+
T Consensus        24 ~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd------vn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll   95 (494)
T PHA02989         24 RTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD------VNYKG-YIETPLCAVLRNREITSNKIKKIVKLLL   95 (494)
T ss_pred             HcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC------ccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHH
Confidence            346778877 67999998766543  68999999999875      44444 5799999998754      578999999


Q ss_pred             hcCCccccccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccCCCCCChHHHHHHHc--CCHHHHHHHHhcCCch
Q 006802          180 QHMNLETASIPARNGYDSFHVAAKQ---GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ--GHIDVVNFLLEIDSNL  254 (630)
Q Consensus       180 ~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~--g~~e~v~~LL~~~~~~  254 (630)
                      ++  +++++..+..|.||||.|+..   |+.+++++|+++|+++.+..|..|.||||+|+..  ++.+++++|+++|+++
T Consensus        96 ~~--Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi  173 (494)
T PHA02989         96 KF--GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNL  173 (494)
T ss_pred             HC--CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc
Confidence            98  577888999999999988765   6899999999999996467889999999998764  6899999999999998


Q ss_pred             hhhhccCCCcHHHHHHHcC----CHHHHHHHHhCCCCCCcccCCCCCchhhhhccC------CCHHHHHHhhcCCCCccc
Q 006802          255 AKIARNNGKTVLHSAARMG----HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG------QNEDIVLELIRPDPSVLK  324 (630)
Q Consensus       255 ~~~~d~~g~tpLh~Aa~~g----~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~------g~~~iv~~Ll~~~~~~~n  324 (630)
                      ....+..|.||||.|+..+    +.+++++|++.|++.+.. |..|.|+||.++..      +..+++++|+. +.+ +|
T Consensus       174 ~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~-~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-vn  250 (494)
T PHA02989        174 FEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN-NNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK-IN  250 (494)
T ss_pred             cccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc-CCccccHHHHHHHhchhhcccchHHHHHHHh-CCC-CC
Confidence            5446788999999998764    899999999999998765 77899999987654      35677777665 454 59


Q ss_pred             ccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 006802          325 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  389 (630)
Q Consensus       325 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~  389 (630)
                      .+|..|+||||+|+..|+.+++++|++ .|+|+|.+|..|.||||+|+..++.++++.|++.++.
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            999999999999999999999999999 8999999999999999999999999999999998754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.3e-34  Score=319.09  Aligned_cols=302  Identities=18%  Similarity=0.165  Sum_probs=245.9

Q ss_pred             ccccccc-cccccC-CCccccccccchhhh--hhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCC-
Q 006802           58 KQQSFHG-VTIDKQ-PSTRGVMEKQKSFRG--FIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGN-  132 (630)
Q Consensus        58 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~-  132 (630)
                      +.+..+| ++++.+ +..|.+++|.+.-..  ..+..+       -.+      +.+.+++.+|..|.||||+|++.|+ 
T Consensus       159 k~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVk-------lLL------e~GADVN~kD~~G~TPLH~Aa~~g~~  225 (764)
T PHA02716        159 KYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILE-------WLC------NNGVNVNLQNNHLITPLHTYLITGNV  225 (764)
T ss_pred             HHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHH-------HHH------HcCCCCCCCCCCCCCHHHHHHHcCCC
Confidence            4556778 899988 777888888532211  112222       111      3568899999999999999999995 


Q ss_pred             -HHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHH-------------------------------------HHhCCHHH
Q 006802          133 -LSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA-------------------------------------AESGHALI  174 (630)
Q Consensus       133 -~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~A-------------------------------------a~~g~~ei  174 (630)
                       .++|+.|++.|++      ++.+|..|.||||+|                                     +..|+.++
T Consensus       226 ~~eIVklLLe~GAD------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~lei  299 (764)
T PHA02716        226 CASVIKKIIELGGD------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISV  299 (764)
T ss_pred             CHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHH
Confidence             5899999999875      677899999999975                                     34578889


Q ss_pred             HHHHHhcCCccccccCCCCCCcHHHHHHH--cCCHHHHHHHHhcCCCccccCCCCCChHHHHHHH--------------c
Q 006802          175 VEEMLQHMNLETASIPARNGYDSFHVAAK--QGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA--------------Q  238 (630)
Q Consensus       175 v~~LL~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~--------------~  238 (630)
                      +++|+++  +.+++..|..|.||||+|+.  .++.+++++|++.+.+ ++..|..|.||||+|+.              .
T Consensus       300 VklLLe~--GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~  376 (764)
T PHA02716        300 VYSFLQP--GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVNILDPETDND  376 (764)
T ss_pred             HHHHHhC--CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhcccccccccc
Confidence            9999987  56678889999999999864  4689999999999988 56789999999999875              3


Q ss_pred             CCHHHHHHHHhcCCchhhhhccCCCcHHHHH----HHcCCHHHHHHHHhCCCCC--------------------------
Q 006802          239 GHIDVVNFLLEIDSNLAKIARNNGKTVLHSA----ARMGHLEVVKALVSKDPST--------------------------  288 (630)
Q Consensus       239 g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~A----a~~g~~~iv~~Ll~~~~~~--------------------------  288 (630)
                      ++.+++++|+++|+++ +..|..|.||||.+    ...++.+++++|++.+...                          
T Consensus       377 ~~~eVVklLL~~GADI-n~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a  455 (764)
T PHA02716        377 IRLDVIQCLISLGADI-TAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIA  455 (764)
T ss_pred             ChHHHHHHHHHCCCCC-CCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHH
Confidence            7899999999999997 77899999999942    2357789999998754210                          


Q ss_pred             ----------------------------------CcccCCCCCchhhhhccCCCH-----HHHHHhhcCCCCcccccCCC
Q 006802          289 ----------------------------------GFRTDKKGQTALHMAVKGQNE-----DIVLELIRPDPSVLKLEDNK  329 (630)
Q Consensus       289 ----------------------------------~~~~d~~g~t~Lh~Aa~~g~~-----~iv~~Ll~~~~~~~n~~d~~  329 (630)
                                                        ....|..|+||||+|+..|+.     +++++|++.|+++ |.+|.+
T Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI-N~~d~~  534 (764)
T PHA02716        456 KYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI-NIPTKN  534 (764)
T ss_pred             hcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC-cccCCC
Confidence                                              011366899999999999877     4559999999887 999999


Q ss_pred             CChHHHHHHHhCcH-----HHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          330 GNTALHIAIKKGRT-----QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       330 G~TpLh~A~~~g~~-----~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      |+||||+|+++|+.     ++|+.|++ .|++++..      .+++|...++.+++.+|..+|+..
T Consensus       535 G~TPLh~A~~~g~~~~~~~eIvk~LL~-~ga~~~~~------~l~~~~~~~~~~~~~ll~~~~~~~  593 (764)
T PHA02716        535 GVTPLMLTMRNNRLSGHQWYIVKNILD-KRPNVDIV------IIFLDKCYANGKFPSLLLSEDDII  593 (764)
T ss_pred             CCCHHHHHHHcCCccccHHHHHHHHHh-cCCCcchH------HHHHHhhhhhhHHHHHHHHcchhH
Confidence            99999999999976     99999999 88888776      489999999999999999998854

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-33  Score=310.80  Aligned_cols=261  Identities=24%  Similarity=0.294  Sum_probs=238.8

Q ss_pred             CCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHH-----HHHcC
Q 006802          131 GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHV-----AAKQG  205 (630)
Q Consensus       131 g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~-----A~~~g  205 (630)
                      ...+.++.+++.+      ++.+..+..+.||||+|+..|+.++|++|+++  +.+++..+..|.||||+     |+..|
T Consensus        13 ~~~~~~~~~~~~~------~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~--g~~~~~~~~~~~t~L~~~~~~~a~~~~   84 (480)
T PHA03100         13 IKVKNIKYIIMED------DLNDYSYKKPVLPLYLAKEARNIDVVKILLDN--GADINSSTKNNSTPLHYLSNIKYNLTD   84 (480)
T ss_pred             HHHHHHHHHHhcC------ccchhhhcccchhhhhhhccCCHHHHHHHHHc--CCCCCCccccCcCHHHHHHHHHHHhhc
Confidence            3456778888664      23456678899999999999999999999998  45677778889999999     99999


Q ss_pred             CHHHHHHHHhcCCCccccCCCCCChHHHHHH--HcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC--CHHHHHHH
Q 006802          206 HLEVLKELLGEFPNLVMTTDLSCSTALHTAA--AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG--HLEVVKAL  281 (630)
Q Consensus       206 ~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa--~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~L  281 (630)
                      +.+++++|++.++++ +..|..|.||||+|+  ..|+.+++++|+++|+++ +..+..|.||||.|+..|  +.+++++|
T Consensus        85 ~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~L  162 (480)
T PHA03100         85 VKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLL  162 (480)
T ss_pred             hHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHH
Confidence            999999999999996 788999999999999  999999999999999987 778899999999999999  99999999


Q ss_pred             HhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCC------ChHHHHHHHhCc--HHHHHHHhccc
Q 006802          282 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG------NTALHIAIKKGR--TQIVRCLLSIE  353 (630)
Q Consensus       282 l~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G------~TpLh~A~~~g~--~~iv~~Ll~~~  353 (630)
                      ++.++++... |..|.||||+|+..|+.+++++|++.+++. +..+..|      .||||.|+..|+  .+++++|++ .
T Consensus       163 l~~g~din~~-d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~  239 (480)
T PHA03100        163 IDKGVDINAK-NRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-Y  239 (480)
T ss_pred             HHCCCCcccc-cCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-c
Confidence            9999998765 789999999999999999999999999876 7788888      999999999999  999999999 8


Q ss_pred             CCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          354 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       354 g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      |++++.+|..|.||||+|+..++.+++++|+++|++....+..+.+|....
T Consensus       240 g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        240 GVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            999999999999999999999999999999999999998888888886553

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=301.72  Aligned_cols=229  Identities=23%  Similarity=0.275  Sum_probs=212.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHc
Q 006802          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ  238 (630)
Q Consensus       159 g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  238 (630)
                      .+++||.|+..|+.+++++|++.  +.+.+..+.+|.||||+|+..|+.+++++|++.+.. ++..+..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHHHHHC
Confidence            47899999999999999999998  566777788999999999999999999999999987 455677889999999999


Q ss_pred             CCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcC
Q 006802          239 GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP  318 (630)
Q Consensus       239 g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~  318 (630)
                      |+.+++++|++.|.......+.+|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|+.+++++|++.
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999998876677788999999999999999999999999998765 88999999999999999999999999


Q ss_pred             CCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCC-CHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 006802          319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE-SPLDVAEKLGNTELFSLLKEAGAAHSKD  393 (630)
Q Consensus       319 ~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~-TpL~~A~~~~~~~iv~~L~~~ga~~~~~  393 (630)
                      ++++ +.+|..|+||||+|+..|+.+++++|++ .|++++..+..|. ||+++|+..++.+++++|+++|++.+..
T Consensus       158 g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        158 KACL-DIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             CCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            8876 8899999999999999999999999999 8999999998875 8899999999999999999999998653

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-34  Score=252.74  Aligned_cols=209  Identities=30%  Similarity=0.388  Sum_probs=107.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 006802          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (630)
Q Consensus       120 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh  199 (630)
                      +.++.+.+++.....-|+.+++..+    +.+....|.+|+||||+||..|+.++|.+|+.. ....++..|..|+||||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~----kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlh   77 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP----KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLH   77 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh----hhhhccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhh
Confidence            3455555555555555555555433    222222333566666666666666666666542 22233334445555555


Q ss_pred             HHHHcCCHHHHHHHHhc-CCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHH
Q 006802          200 VAAKQGHLEVLKELLGE-FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV  278 (630)
Q Consensus       200 ~A~~~g~~eiv~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv  278 (630)
                      .|+..|+.++|+.|+.+ +++ ++..+..|.||||||+..|+.+++++|+++|+.+ +++|                   
T Consensus        78 ia~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD-------------------  136 (226)
T KOG4412|consen   78 IAASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKD-------------------  136 (226)
T ss_pred             hhhhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccc-------------------
Confidence            55555555555555554 333 3344444555555555555555555555554433 4444                   


Q ss_pred             HHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcc
Q 006802          279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN  358 (630)
Q Consensus       279 ~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in  358 (630)
                                     ..|+||||-|+.-|+.+++++|+..++.+ |.+|..|+||||.|...|+.++..+|++ .|++++
T Consensus       137 ---------------~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G~TpL~~al~e~~~d~a~lLV~-~gAd~~  199 (226)
T KOG4412|consen  137 ---------------KQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYGFTPLHHALAEGHPDVAVLLVR-AGADTD  199 (226)
T ss_pred             ---------------cccCchhHHHHhccchhhHHHHHhcCCCC-CcccccCccHHHHHHhccCchHHHHHHH-hcccee
Confidence                           44444444444444444444444444333 5556666666666655556666666665 556666


Q ss_pred             cccCCCCCHHHHHH
Q 006802          359 SLNKAGESPLDVAE  372 (630)
Q Consensus       359 ~~n~~G~TpL~~A~  372 (630)
                      ..|+.| ||+-.|+
T Consensus       200 ~edke~-t~~~~a~  212 (226)
T KOG4412|consen  200 REDKEG-TALRIAC  212 (226)
T ss_pred             eccccC-chHHHHH
Confidence            666655 6655443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.8e-33  Score=303.07  Aligned_cols=268  Identities=19%  Similarity=0.285  Sum_probs=217.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHH
Q 006802          124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAK  203 (630)
Q Consensus       124 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~  203 (630)
                      |..+.+..+.+-+...++.....  ....+..+..+.||||+|+..|+.++|++|++.  +.+++..+.+|.||||+|+.
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~--gadvn~~d~~g~TpLh~A~~   79 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHT--ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTR--GHNVNQPDHRDLTPLHIICK   79 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhh--hhhcCcccccCcchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHH
Confidence            55666777765566666552211  223355567889999999999999999999998  56778889999999999999


Q ss_pred             cCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC--CHHHHHHH
Q 006802          204 QGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG--HLEVVKAL  281 (630)
Q Consensus       204 ~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~L  281 (630)
                      .|+.++++.|++.+.....   ..+.+||+.|+..++.++++.|+..+.+.....+   ...+......+  +.+++++|
T Consensus        80 ~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~L  153 (477)
T PHA02878         80 EPNKLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLL  153 (477)
T ss_pred             CccHhHHHHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHH
Confidence            9999999999988655322   4678999999999999999999987543211111   11111111122  34699999


Q ss_pred             HhCCCCCCcccCCC-CCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccc
Q 006802          282 VSKDPSTGFRTDKK-GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL  360 (630)
Q Consensus       282 l~~~~~~~~~~d~~-g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~  360 (630)
                      ++.|++++.. +.. |.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|++ .|++++.+
T Consensus       154 l~~gadin~~-~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~-~ga~in~~  230 (477)
T PHA02878        154 LSYGADINMK-DRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLE-NGASTDAR  230 (477)
T ss_pred             HHcCCCCCcc-CCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHH-cCCCCCCC
Confidence            9999999876 666 999999999999999999999999876 8899999999999999999999999999 89999999


Q ss_pred             cCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccCC-CCCchHHHH
Q 006802          361 NKAGESPLDVAEKL-GNTELFSLLKEAGAAHSKDHG-KPPSATKQL  404 (630)
Q Consensus       361 n~~G~TpL~~A~~~-~~~~iv~~L~~~ga~~~~~~~-~~~~~~~~l  404 (630)
                      |..|.||||+|+.. ++.+++++|+++|++...... .+.+|....
T Consensus       231 d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             CCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            99999999999976 789999999999999987664 567776654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.8e-34  Score=250.17  Aligned_cols=185  Identities=31%  Similarity=0.406  Sum_probs=165.5

Q ss_pred             cCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc
Q 006802          111 KNKDSPGK-RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI  189 (630)
Q Consensus       111 ~~~~~~~~-~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~  189 (630)
                      ...+.++. +|+||||+||..|+.++|++|+....     ..++.+|..|+||||+||..|+.++|+.|+.+. +.+++.
T Consensus        28 kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~n-----v~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~-~advna  101 (226)
T KOG4412|consen   28 KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPN-----VKPDDKDDAGWTPLHIAASNGNDEVVKELLNRS-GADVNA  101 (226)
T ss_pred             hhhhccccccCCceeeeeeecCchhHHHHHHhcCC-----CCCCCccccCCchhhhhhhcCcHHHHHHHhcCC-CCCcce
Confidence            34445554 99999999999999999999997533     237888999999999999999999999999984 678899


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHH
Q 006802          190 PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA  269 (630)
Q Consensus       190 ~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~A  269 (630)
                      .+..|.||||+|+..|..+|++.|+++++. +..+|..|.||||.|+..|.++++++|+..|+.+ +.+|+.|+||||.|
T Consensus       102 ~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  102 TTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYGFTPLHHA  179 (226)
T ss_pred             ecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhcCCCC-CcccccCccHHHHH
Confidence            999999999999999999999999999966 7889999999999999999999999999999876 88999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhcc
Q 006802          270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK  305 (630)
Q Consensus       270 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~  305 (630)
                      ...|+.++..+|++.+++.... |+.| ||+..|+-
T Consensus       180 l~e~~~d~a~lLV~~gAd~~~e-dke~-t~~~~a~~  213 (226)
T KOG4412|consen  180 LAEGHPDVAVLLVRAGADTDRE-DKEG-TALRIACN  213 (226)
T ss_pred             HhccCchHHHHHHHhccceeec-cccC-chHHHHHH
Confidence            9999999999999999887654 7777 88877653

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.1e-33  Score=278.31  Aligned_cols=216  Identities=21%  Similarity=0.159  Sum_probs=193.0

Q ss_pred             hCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHH
Q 006802          169 SGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL  248 (630)
Q Consensus       169 ~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL  248 (630)
                      .++.+++++|++++    .+..|.+|.||||+|+..|+.++++.|++.+++.. ..  +|.||||+|+..|+.+++++|+
T Consensus         9 ~~~~~~~~~Lis~~----a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-~~--d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSSKD----AFKADVHGHSALYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHhCC----CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-CC--CCCCHHHHHHHCCCHHHHHHHH
Confidence            46789999999973    24578899999999999999999999999988643 22  4789999999999999999999


Q ss_pred             hcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCC-CchhhhhccCCCHHHHHHhhcCCCCcccccC
Q 006802          249 EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG-QTALHMAVKGQNEDIVLELIRPDPSVLKLED  327 (630)
Q Consensus       249 ~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d  327 (630)
                      +.|+++ +..|..|.||||+|+..|+.+++++|++.+++++.. +..| .||||+|+..|+.+++++|++.++...+.  
T Consensus        82 ~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~-~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~--  157 (284)
T PHA02791         82 FSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--  157 (284)
T ss_pred             HCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc--
Confidence            999987 678999999999999999999999999999998765 6666 58999999999999999999987644221  


Q ss_pred             CCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCH-HHHHHHcCCHHHHHHHHHcCCCCcccCCC
Q 006802          328 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP-LDVAEKLGNTELFSLLKEAGAAHSKDHGK  396 (630)
Q Consensus       328 ~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~Tp-L~~A~~~~~~~iv~~L~~~ga~~~~~~~~  396 (630)
                      ..|.||||+|+..|+.+++++|++ .|+++|.+|..|.|| ||+|+..|+.+++++|+++|++....+..
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~  226 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLE  226 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCccc
Confidence            358999999999999999999999 899999999999987 99999999999999999999999877654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.7e-32  Score=298.71  Aligned_cols=261  Identities=15%  Similarity=0.153  Sum_probs=227.5

Q ss_pred             CCCChHHHHHHH--cCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHh-----CCHHHHHHHHhcCCccccccC
Q 006802          118 KRGDLQLHLAAR--AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES-----GHALIVEEMLQHMNLETASIP  190 (630)
Q Consensus       118 ~~g~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~-----g~~eiv~~LL~~~~~~~~~~~  190 (630)
                      .+|.|+++.+..  .++.++|+.|++.|.+      ++.+|..|.||||.|+..     ++.+++++|+++  +++++..
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad------vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~--GadiN~~  105 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGAN------VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN--GADINKK  105 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCC------CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC--CCCCCCC
Confidence            456787774444  4579999999999875      678899999999999864     779999999998  6778889


Q ss_pred             CCCCCcHHHHHHHcC---CHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCC---HHHHHHHHhcCCchhhhhccCCCc
Q 006802          191 ARNGYDSFHVAAKQG---HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH---IDVVNFLLEIDSNLAKIARNNGKT  264 (630)
Q Consensus       191 ~~~g~t~Lh~A~~~g---~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~---~e~v~~LL~~~~~~~~~~d~~g~t  264 (630)
                      +.+|.||||+|+.++   +.+++++|+++|++ ++..|..|.||||+|+..|+   .+++++|+++|+++....+..|.|
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t  184 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYD  184 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCc
Confidence            999999999999986   78999999999998 56789999999999999998   999999999999984444567999


Q ss_pred             HHHHHHHc----CCHHHHHHHHhCCCCCCcccCCCCCchhh-------hhccCCCHHHHHHhhcCCCCcccccCCCCChH
Q 006802          265 VLHSAARM----GHLEVVKALVSKDPSTGFRTDKKGQTALH-------MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA  333 (630)
Q Consensus       265 pLh~Aa~~----g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh-------~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp  333 (630)
                      |||.++..    ++.+++++|+++|+++... +..|.++++       .+...++.+++.+|+. +.+ +|.+|..|+||
T Consensus       185 ~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~-~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TP  261 (489)
T PHA02798        185 TLHCYFKYNIDRIDADILKLFVDNGFIINKE-NKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNP  261 (489)
T ss_pred             HHHHHHHhccccCCHHHHHHHHHCCCCcccC-CccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccH
Confidence            99999764    4799999999999998765 778888876       3456677888887766 454 59999999999


Q ss_pred             HHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Q 006802          334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  391 (630)
Q Consensus       334 Lh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~  391 (630)
                      ||+|+..|+.+++++|++ .|+|+|.+|..|+|||++|+..++.++++.|+++|++..
T Consensus       262 L~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        262 LYYSVSHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHHHHcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            999999999999999999 899999999999999999999999999999999998764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=275.88  Aligned_cols=195  Identities=28%  Similarity=0.434  Sum_probs=166.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChh-hhh--HHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAK--DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~-~~~--~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~  193 (630)
                      ..+|.|||-.||++|+.++|++|++++... +..  .-.+..+-.|-+||..|+..||.++|+.|++++  .+++.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc--Ccccccccc
Confidence            456789999999999999999999965422 110  112344567889999999999999999999984  666766677


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG  273 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g  273 (630)
                      ..|||..||.-|+.+++++|++++.+ +...|..|.|+|++||.+||.+++++|++.|+++ +.++..|.|+||.++..|
T Consensus       117 NStPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESG  194 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcc
Confidence            77999999999999999999999988 5678999999999999999999999999999998 778899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhc
Q 006802          274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR  317 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~  317 (630)
                      ++|++++|+++++.+.  +|..|.|||..|+..|+.++|..|+.
T Consensus       195 ~vdivq~Ll~~ga~i~--~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKID--VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cHHHHHHHHhCCceee--ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999998875  57889999999998888888877773

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.3e-32  Score=292.88  Aligned_cols=323  Identities=14%  Similarity=0.146  Sum_probs=221.1

Q ss_pred             cccccc-cCCCccccccccchhhhh---hhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcC--CHHHH
Q 006802           63 HGVTID-KQPSTRGVMEKQKSFRGF---IEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAG--NLSRV  136 (630)
Q Consensus        63 ~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v  136 (630)
                      +.++++ .++..|.+++|.+...++   .+..+-+.             +.+++++.+|..|.||||+|+..|  +.|+|
T Consensus        29 ~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLL-------------s~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv   95 (672)
T PHA02730         29 TCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLL-------------SRGVERLCRNNEGLTPLGVYSKRKYVKSQIV   95 (672)
T ss_pred             HhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHH-------------hCCCCCcccCCCCCChHHHHHHcCCCcHHHH
Confidence            344555 666778899998877763   44444221             467889999999999999999977  79999


Q ss_pred             HHHHHhcChh--h-----------------------hhHHhh-c------C-C----CCCCcHHHHHHHhCCHHHHHHHH
Q 006802          137 MEILQSCDAN--E-----------------------AKDLLS-K------K-N----QEGETPLYVAAESGHALIVEEML  179 (630)
Q Consensus       137 ~~Ll~~~~~~--~-----------------------~~~~l~-~------~-n----~~g~TpLh~Aa~~g~~eiv~~LL  179 (630)
                      +.|++.+...  +                       .+-++. .      . +    ..|.+|+++|...++.|+|++|+
T Consensus        96 ~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi  175 (672)
T PHA02730         96 HLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLL  175 (672)
T ss_pred             HHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHH
Confidence            9999986411  0                       111221 0      0 1    24566666666666666666666


Q ss_pred             hcCCccc-c----ccCCCCCC-cHHHHH------HHcCCHHHHHHHHhcCCCccccCCCCCChHHHH--HHHcCCHHHHH
Q 006802          180 QHMNLET-A----SIPARNGY-DSFHVA------AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT--AAAQGHIDVVN  245 (630)
Q Consensus       180 ~~~~~~~-~----~~~~~~g~-t~Lh~A------~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~--Aa~~g~~e~v~  245 (630)
                      +++.... .    ...+..+. |.||++      ...++.|++++|+++|++ .+..|..|.||||+  |...|+.|+++
T Consensus       176 ~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~~~~~~~eiv~  254 (672)
T PHA02730        176 KSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYYWSCSTIDIEIVK  254 (672)
T ss_pred             HcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCcccHHHHH
Confidence            6632221 0    11222222 334432      234566777777777766 45566777777774  44456677777


Q ss_pred             HHHh--------------------------------cCCchhhh--------------------hccCCCc---------
Q 006802          246 FLLE--------------------------------IDSNLAKI--------------------ARNNGKT---------  264 (630)
Q Consensus       246 ~LL~--------------------------------~~~~~~~~--------------------~d~~g~t---------  264 (630)
                      +|++                                +|.+. .+                    .+..|.+         
T Consensus       255 ~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~  333 (672)
T PHA02730        255 LLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILK  333 (672)
T ss_pred             HHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHH
Confidence            7777                                45554 22                    3344433         


Q ss_pred             ------------HHHHHHHcC---CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC----HHHHHHhhcCCCC-ccc
Q 006802          265 ------------VLHSAARMG---HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPS-VLK  324 (630)
Q Consensus       265 ------------pLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~----~~iv~~Ll~~~~~-~~n  324 (630)
                                  .||.-...+   +.+++++|+++|++++.  +..|.||||+|+..++    .++++.|+++|+. .++
T Consensus       334 ~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN  411 (672)
T PHA02730        334 RFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK--TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAIN  411 (672)
T ss_pred             hhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc--CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccc
Confidence                        455555544   47777777777777774  3689999999988775    8999999999874 468


Q ss_pred             ccCCCCChHHHH---HHHhC---------cHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 006802          325 LEDNKGNTALHI---AIKKG---------RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  392 (630)
Q Consensus       325 ~~d~~G~TpLh~---A~~~g---------~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~  392 (630)
                      .+|.+|.||||.   |...+         ..+++++|++ +|+++|.+|..|+||||+|+..++.+++++|+++||+...
T Consensus       412 ~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~  490 (672)
T PHA02730        412 HVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNT  490 (672)
T ss_pred             ccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCC
Confidence            899999999983   33332         2357999998 8999999999999999999999999999999999999987


Q ss_pred             cCC-CCCchHHH
Q 006802          393 DHG-KPPSATKQ  403 (630)
Q Consensus       393 ~~~-~~~~~~~~  403 (630)
                      .+. .+.++...
T Consensus       491 ~d~~~g~TaL~~  502 (672)
T PHA02730        491 TSRSIINTAIQK  502 (672)
T ss_pred             CCCcCCcCHHHH
Confidence            775 35666544

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-31  Score=298.19  Aligned_cols=325  Identities=15%  Similarity=0.097  Sum_probs=204.3

Q ss_pred             ccccccccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHH
Q 006802           58 KQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVM  137 (630)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~  137 (630)
                      +.+..+|++++..+..|.|+++.+...++.+..+...   +-.+   ..+   ...+..+  ..+++|.|+..|+.++|+
T Consensus        52 ~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~---~~Ll---~~~---~~~n~~~--~~~~~~~a~~~~~~e~vk  120 (661)
T PHA02917         52 KLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIA---MALL---EAT---GYSNIND--FNIFSYMKSKNVDVDLIK  120 (661)
T ss_pred             HHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHH---HHHH---hcc---CCCCCCC--cchHHHHHhhcCCHHHHH
Confidence            3344566666666666666666666666544332111   1100   011   1122222  225556666666666666


Q ss_pred             HHHHhcChhhhhHHhhcCCCCCCcHHHHHH--HhCCHHHHHHHHhcCCccccccCC---CCC-----------CcHHHHH
Q 006802          138 EILQSCDANEAKDLLSKKNQEGETPLYVAA--ESGHALIVEEMLQHMNLETASIPA---RNG-----------YDSFHVA  201 (630)
Q Consensus       138 ~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa--~~g~~eiv~~LL~~~~~~~~~~~~---~~g-----------~t~Lh~A  201 (630)
                      +|++.|.+      ++.+|..|.||||.|+  ..|+.++|++|++++  ++++..+   ..|           .||||+|
T Consensus       121 ~Ll~~Gad------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~G--a~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a  192 (661)
T PHA02917        121 VLVEHGFD------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENG--CSVLYEDEDDEYGYAYDDYQPRNCGTVLHLY  192 (661)
T ss_pred             HHHHcCCC------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcC--CCccccccccccccccccccccccccHHHHH
Confidence            66666543      4566777777777543  456777777777763  3333222   223           4777777


Q ss_pred             HH-----------cCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCH--HHHHHHHhcCCchh---hhhccCCCcH
Q 006802          202 AK-----------QGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI--DVVNFLLEIDSNLA---KIARNNGKTV  265 (630)
Q Consensus       202 ~~-----------~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~--e~v~~LL~~~~~~~---~~~d~~g~tp  265 (630)
                      +.           .++.+++++|++.|.+ ++..|..|.||||+|+..|+.  ++|++|++ |++..   ...|..|.+|
T Consensus       193 ~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~  270 (661)
T PHA02917        193 IISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTR  270 (661)
T ss_pred             HhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccc
Confidence            65           3567777777777776 455677777777777777764  67777764 55442   2345566777


Q ss_pred             HHHHHHc---------CCHHHHHHHHhCCCCCCcc------------------cCCCCCchhhhhc---cCCC--HHHHH
Q 006802          266 LHSAARM---------GHLEVVKALVSKDPSTGFR------------------TDKKGQTALHMAV---KGQN--EDIVL  313 (630)
Q Consensus       266 Lh~Aa~~---------g~~~iv~~Ll~~~~~~~~~------------------~d~~g~t~Lh~Aa---~~g~--~~iv~  313 (630)
                      +|+|+.-         .+.++++.|++.|++....                  ....+.+++|.+.   ..|.  .++++
T Consensus       271 ~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~  350 (661)
T PHA02917        271 GIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVE  350 (661)
T ss_pred             hHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHH
Confidence            7777731         1567777777777543110                  0112233333322   2443  34666


Q ss_pred             HhhcCCCCc-----------------------------ccccCCCCChHHHHHHHhC-----------------------
Q 006802          314 ELIRPDPSV-----------------------------LKLEDNKGNTALHIAIKKG-----------------------  341 (630)
Q Consensus       314 ~Ll~~~~~~-----------------------------~n~~d~~G~TpLh~A~~~g-----------------------  341 (630)
                      .|++.|+++                             ++..|.+|+||||.|++.+                       
T Consensus       351 ~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (661)
T PHA02917        351 CMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACP  430 (661)
T ss_pred             HHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhh
Confidence            666655431                             1334567999999987533                       


Q ss_pred             cHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          342 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       342 ~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      ..+++++|++ +|+|+|.+|..|.||||+|+..++.+++++|+++|++....+..+.++....
T Consensus       431 ~~~~v~~Ll~-~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A  492 (661)
T PHA02917        431 ILSTINICLP-YLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIA  492 (661)
T ss_pred             hHHHHHHHHH-CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            3567899999 8999999999999999999999999999999999999998888888876654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=6.8e-33  Score=312.24  Aligned_cols=323  Identities=26%  Similarity=0.373  Sum_probs=182.2

Q ss_pred             ccccccccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHH
Q 006802           58 KQQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVM  137 (630)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~  137 (630)
                      .....+|+++...+..+-+++|.+.+.|+++...-..             .++..++..+.+|.||||.||+.+..++++
T Consensus       226 eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~-------------~~ga~~~~~~vr~~tplh~AA~~~~~e~~~  292 (1143)
T KOG4177|consen  226 ELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLL-------------QHGASVNVSTVRGETPLHMAARAGQVEVCK  292 (1143)
T ss_pred             eeeeeccCcCCcccccCccHHHHHHhccchhHHHHHH-------------hcccccCcccccccCcchhhhccchhhhHh
Confidence            4557899999999999999999999999998877332             467889999999999999999999999999


Q ss_pred             HHHHhcChhhh---------------------------hHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccC
Q 006802          138 EILQSCDANEA---------------------------KDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP  190 (630)
Q Consensus       138 ~Ll~~~~~~~~---------------------------~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~  190 (630)
                      +|++.+.+...                           ....+..+..|.||||+++..|+.++..+|...  ...-...
T Consensus       293 ~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~--~~~~~~a  370 (1143)
T KOG4177|consen  293 LLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEH--GAQRRQA  370 (1143)
T ss_pred             hhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhcc--ccccCcc
Confidence            99998764211                           011223344555555555555555544444443  2222334


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHH
Q 006802          191 ARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA  270 (630)
Q Consensus       191 ~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa  270 (630)
                      ...|.||+|.|+..|..+++++++..+.+ ++..+..|.||||.|+..++..+++.+++.+++. +..+..|.||+|.|+
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAA  448 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhh
Confidence            44566666666666666666666665555 3334444444444444444444444444444433 333444444444444


Q ss_pred             HcC-CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCC------------------------------
Q 006802          271 RMG-HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD------------------------------  319 (630)
Q Consensus       271 ~~g-~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~------------------------------  319 (630)
                      ..| ..++...++..+.+++.. ...|.||||+|+..|+.+++..+++.+                              
T Consensus       449 ~~g~~~~~~~~l~~~g~~~n~~-s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~  527 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADPNAV-SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILL  527 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCcchh-ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHh
Confidence            444 333333333333333322 333444444444444433333333321                              


Q ss_pred             ---CCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Q 006802          320 ---PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK  396 (630)
Q Consensus       320 ---~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~  396 (630)
                         .. .+.++..|+||||.|+..|+..+|++|++ +|+|++.+++.|+||||.|+..|+.+++.+|+++||+++..+-.
T Consensus       528 ~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~  605 (1143)
T KOG4177|consen  528 EHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLD  605 (1143)
T ss_pred             hcCCc-eehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccccc
Confidence               11 13344455555555555555555555555 55555555555555555555555555555555555555554444


Q ss_pred             CCch
Q 006802          397 PPSA  400 (630)
Q Consensus       397 ~~~~  400 (630)
                      +.++
T Consensus       606 g~Tp  609 (1143)
T KOG4177|consen  606 GFTP  609 (1143)
T ss_pred             Ccch
Confidence            4443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.98  E-value=6.2e-31  Score=293.98  Aligned_cols=276  Identities=17%  Similarity=0.158  Sum_probs=220.5

Q ss_pred             ccccCCCCCCCCCChHHHHHH--HcCCHHHHHHHHHhcChhhhhHHhhcCCCCC-----------CcHHHHHHH------
Q 006802          108 ERKKNKDSPGKRGDLQLHLAA--RAGNLSRVMEILQSCDANEAKDLLSKKNQEG-----------ETPLYVAAE------  168 (630)
Q Consensus       108 ~~~~~~~~~~~~g~T~Lh~Aa--~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g-----------~TpLh~Aa~------  168 (630)
                      +.+++++.+|.+|.||||.|+  ..|+.++|++|++.|++...   -+..+..|           .||||+|+.      
T Consensus       124 ~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~---~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~  200 (661)
T PHA02917        124 EHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY---EDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSE  200 (661)
T ss_pred             HcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc---cccccccccccccccccccccHHHHHHhhccccc
Confidence            468999999999999999654  57899999999999875311   12233445           499999986      


Q ss_pred             -----hCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCH--HHHHHHHhcCCCcc---ccCCCCCChHHHHHHHc
Q 006802          169 -----SGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL--EVLKELLGEFPNLV---MTTDLSCSTALHTAAAQ  238 (630)
Q Consensus       169 -----~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~--eiv~~Ll~~~~~~~---~~~d~~g~tpL~~Aa~~  238 (630)
                           .++.++|++|+++  +.+++..|.+|.||||+|+.+|+.  ++++.|++ +.+..   ...|..|.+|+|+|+..
T Consensus       201 ~~~~~~~~~eiv~~Li~~--Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl  277 (661)
T PHA02917        201 SDTRAYVRPEVVKCLINH--GIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYL  277 (661)
T ss_pred             ccccccCcHHHHHHHHHC--CCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHH
Confidence                 5689999999998  578888999999999999999985  79999975 65543   24566788999999942


Q ss_pred             ---------CCHHHHHHHHhcCCchhh------h------------hccCCCcHHHHHH---HcCC--HHHHHHHHhCCC
Q 006802          239 ---------GHIDVVNFLLEIDSNLAK------I------------ARNNGKTVLHSAA---RMGH--LEVVKALVSKDP  286 (630)
Q Consensus       239 ---------g~~e~v~~LL~~~~~~~~------~------------~d~~g~tpLh~Aa---~~g~--~~iv~~Ll~~~~  286 (630)
                               .+.++++.|++.|++...      .            .+..+.+++|.+.   ..|.  .++++.|++.|+
T Consensus       278 ~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GA  357 (661)
T PHA02917        278 NSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGA  357 (661)
T ss_pred             HhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCC
Confidence                     278999999999975310      0            1223455555444   3665  558888888877


Q ss_pred             CCCcc-----------------------------cCCCCCchhhhhccCC-----------------------CHHHHHH
Q 006802          287 STGFR-----------------------------TDKKGQTALHMAVKGQ-----------------------NEDIVLE  314 (630)
Q Consensus       287 ~~~~~-----------------------------~d~~g~t~Lh~Aa~~g-----------------------~~~iv~~  314 (630)
                      +++..                             .+.+|+||||.|++.+                       ..++++.
T Consensus       358 dvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  437 (661)
T PHA02917        358 VVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINI  437 (661)
T ss_pred             CCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHH
Confidence            64321                             2456999999987543                       3567899


Q ss_pred             hhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCc
Q 006802          315 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK-LGNTELFSLLKEAGAAHS  391 (630)
Q Consensus       315 Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~-~~~~~iv~~L~~~ga~~~  391 (630)
                      |+.+|+++ |.+|..|+||||+|+..++.+++++|++ .|++++.+|..|.|||++|.. .++.+++++|+.+|++..
T Consensus       438 Ll~~GAdI-N~kd~~G~TpLh~Aa~~~~~~~v~~Ll~-~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~  513 (661)
T PHA02917        438 CLPYLKDI-NMIDKRGETLLHKAVRYNKQSLVSLLLE-SGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLD  513 (661)
T ss_pred             HHHCCCCC-CCCCCCCcCHHHHHHHcCCHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChh
Confidence            99999887 9999999999999999999999999999 899999999999999999996 689999999999999875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=284.74  Aligned_cols=261  Identities=15%  Similarity=0.183  Sum_probs=224.1

Q ss_pred             cCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHh--CCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcC--
Q 006802          130 AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES--GHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG--  205 (630)
Q Consensus       130 ~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~--g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g--  205 (630)
                      ..+.++|+.|++.|.+      ++.. ..|.||||.++..  ++.++|++|+++  +++++..+ .+.||||.|+.++  
T Consensus        13 ~~~~~~v~~LL~~Gad------vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~--GAdvn~~~-~~~tpL~~a~~~~~~   82 (494)
T PHA02989         13 TVDKNALEFLLRTGFD------VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDN--GADVNYKG-YIETPLCAVLRNREI   82 (494)
T ss_pred             cCcHHHHHHHHHcCCC------cccc-cCCCCHHHHHHhcCCCChHHHHHHHHc--CCCccCCC-CCCCcHHHHHhccCc
Confidence            4789999999999875      4555 5689999876654  379999999998  45666554 5789999998764  


Q ss_pred             ----CHHHHHHHHhcCCCccccCCCCCChHHHHHHHc---CCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHc--CCHH
Q 006802          206 ----HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM--GHLE  276 (630)
Q Consensus       206 ----~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~---g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~--g~~~  276 (630)
                          +.+++++|+++|++ ++..|..|.||||.|+..   |+.+++++|+++|+++.+..|..|.||||+|+..  ++.+
T Consensus        83 ~~~~~~~iv~~Ll~~Gad-in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~  161 (494)
T PHA02989         83 TSNKIKKIVKLLLKFGAD-INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKD  161 (494)
T ss_pred             chhhHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHH
Confidence                47899999999998 567788999999988765   6899999999999997567889999999998764  6899


Q ss_pred             HHHHHHhCCCCCCcccCCCCCchhhhhccC----CCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhC------cHHHH
Q 006802          277 VVKALVSKDPSTGFRTDKKGQTALHMAVKG----QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG------RTQIV  346 (630)
Q Consensus       277 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~----g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g------~~~iv  346 (630)
                      ++++|++.|+++....+..|.||||+|+..    ++.+++++|++.|+++ +..|..|.||||.++..+      ..+++
T Consensus       162 iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~~~il  240 (494)
T PHA02989        162 VIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSESVLESFLDNNKILSKKEFKVL  240 (494)
T ss_pred             HHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccccHHHHHHHhchhhcccchHHH
Confidence            999999999998875578999999998765    4899999999999886 888889999999877643      56888


Q ss_pred             HHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       347 ~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      ++|+.  ++++|.+|..|.||||+|+..++.+++++|+++|+++...+..+.+|....
T Consensus       241 ~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A  296 (494)
T PHA02989        241 NFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYA  296 (494)
T ss_pred             HHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            88775  699999999999999999999999999999999999999988888887654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=5.4e-32  Score=304.99  Aligned_cols=274  Identities=33%  Similarity=0.442  Sum_probs=193.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 006802          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (630)
Q Consensus       116 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~  195 (630)
                      ..+.|.||+|.|++.|+.+.++.++..+..      .+..+..|.||||.|+.+++.++|+.++++  +...+..+..|+
T Consensus       370 a~~k~~~pl~la~~~g~~~~v~Lll~~ga~------~~~~gk~gvTplh~aa~~~~~~~v~l~l~~--gA~~~~~~~lG~  441 (1143)
T KOG4177|consen  370 AEEKGFTPLHLAVKSGRVSVVELLLEAGAD------PNSAGKNGVTPLHVAAHYGNPRVVKLLLKR--GASPNAKAKLGY  441 (1143)
T ss_pred             ccccCCcchhhhcccCchhHHHhhhhccCC------cccCCCCCcceeeehhhccCcceEEEEecc--CCChhhHhhcCC
Confidence            344455555555555555555555544432      344455555555555555555555555554  334445555566


Q ss_pred             cHHHHHHHcC-CHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC
Q 006802          196 DSFHVAAKQG-HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH  274 (630)
Q Consensus       196 t~Lh~A~~~g-~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~  274 (630)
                      ||+|+|+..| ..++...+++.+.+ .+..-..|.||||.|+..|+.+++..|++.++.. +.....|.+++|.|...+.
T Consensus       442 T~lhvaa~~g~~~~~~~~l~~~g~~-~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  442 TPLHVAAKKGRYLQIARLLLQYGAD-PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             ChhhhhhhcccHhhhhhhHhhcCCC-cchhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhccchhhhhhhhhh
Confidence            6666666666 55555555555444 3444556666666666666666666666665443 4444556666666666666


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccC
Q 006802          275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  354 (630)
Q Consensus       275 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  354 (630)
                      ..+++.+++.+...... +..|.||||.|+.+|+.++|++|+++++++ +.+|+.|+||||.||..|+.+++.+|++ +|
T Consensus       520 v~~~~~l~~~ga~v~~~-~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~G  596 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLR-TGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLK-HG  596 (1143)
T ss_pred             HHHHHHHhhcCCceehh-cccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHH-cC
Confidence            66666666666666554 888999999999999999999999999988 8889999999999999999999999999 99


Q ss_pred             CCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCchHH
Q 006802          355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA-----HSKDHGKPPSATK  402 (630)
Q Consensus       355 ~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~-----~~~~~~~~~~~~~  402 (630)
                      +++|..|.+|.|||++|...|+.++++.|+..|+.     ...++.++.++..
T Consensus       597 A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~  649 (1143)
T KOG4177|consen  597 ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPED  649 (1143)
T ss_pred             CCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhh
Confidence            99999999999999999999999999999999999     4444555555443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.3e-30  Score=279.92  Aligned_cols=278  Identities=17%  Similarity=0.180  Sum_probs=224.2

Q ss_pred             CCCCCCChHHHHHHHcC---CHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhC--CHHHHHHHHhcCCcccccc
Q 006802          115 SPGKRGDLQLHLAARAG---NLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG--HALIVEEMLQHMNLETASI  189 (630)
Q Consensus       115 ~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g--~~eiv~~LL~~~~~~~~~~  189 (630)
                      .+|..|.||||+|+..|   +.++|+.||+.|++      ++.+|..|.||||+|+..|  +.|+|++|++.+.++..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd------in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE------RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC------CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            67889999999999997   59999999999875      6788999999999999977  7999999999976666666


Q ss_pred             CCCCCCcHHHHHHH--cCCHHHHHHHHh-cCCCccccCC----CCCChHHHHHHHcCCHHHHHHHHhcCCchh------h
Q 006802          190 PARNGYDSFHVAAK--QGHLEVLKELLG-EFPNLVMTTD----LSCSTALHTAAAQGHIDVVNFLLEIDSNLA------K  256 (630)
Q Consensus       190 ~~~~g~t~Lh~A~~--~g~~eiv~~Ll~-~~~~~~~~~d----~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~------~  256 (630)
                      .+..+.+|||.++.  +++.+++++|+. .+.+.....+    ..|.+|+++|...++.|+|++|+++|+++.      .
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            77778899998888  899999999997 3334322212    378999999999999999999999999983      1


Q ss_pred             hhccCCC-cHHHHH------HHcCCHHHHHHHHhCCCCCCcccCCCCCchhhh--hccCCCHHHHHHhhc----------
Q 006802          257 IARNNGK-TVLHSA------ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM--AVKGQNEDIVLELIR----------  317 (630)
Q Consensus       257 ~~d~~g~-tpLh~A------a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~--Aa~~g~~~iv~~Ll~----------  317 (630)
                      ..+..+. |.||++      ...++.|++++|+++|++++.. |..|+||||+  |...++.|+++.|++          
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~k-d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~  268 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGR-DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDD  268 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccc
Confidence            1233344 555533      3557899999999999999876 9999999994  666778999999999          


Q ss_pred             ----------------------CCCCcccc--------------------cCCCCCh---------------------HH
Q 006802          318 ----------------------PDPSVLKL--------------------EDNKGNT---------------------AL  334 (630)
Q Consensus       318 ----------------------~~~~~~n~--------------------~d~~G~T---------------------pL  334 (630)
                                            .+.+. ..                    .|..|.+                     .|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l  347 (672)
T PHA02730        269 ISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAML  347 (672)
T ss_pred             ccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHH
Confidence                                  34432 22                    4566654                     67


Q ss_pred             HHHHHhC---cHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCC----HHHHHHHHHcCCC--CcccCCCCCchHH
Q 006802          335 HIAIKKG---RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN----TELFSLLKEAGAA--HSKDHGKPPSATK  402 (630)
Q Consensus       335 h~A~~~g---~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~----~~iv~~L~~~ga~--~~~~~~~~~~~~~  402 (630)
                      |.-...+   +.+++++|++ +|+++|.. ..|.||||+|+..++    .+++++|+++|++  ....+..+.++..
T Consensus       348 ~~Y~~~~~~v~ieIvelLIs-~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh  422 (672)
T PHA02730        348 INYLHYGDMVSIPILRCMLD-NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMY  422 (672)
T ss_pred             HHHHhcCCcCcHHHHHHHHH-CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHh
Confidence            7777755   6899999999 89999985 799999999988875    8999999999984  5555566666654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=9.2e-30  Score=279.75  Aligned_cols=244  Identities=18%  Similarity=0.217  Sum_probs=212.8

Q ss_pred             ccccCCCCCCCCCChHHHHHHHc-----CCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhC---CHHHHHHHH
Q 006802          108 ERKKNKDSPGKRGDLQLHLAARA-----GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG---HALIVEEML  179 (630)
Q Consensus       108 ~~~~~~~~~~~~g~T~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g---~~eiv~~LL  179 (630)
                      +.+++++.++..|.||||.|+..     ++.++++.|++.|++      ++.+|..|.||||+|+..|   +.+++++|+
T Consensus        59 ~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll  132 (489)
T PHA02798         59 NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD------INKKNSDGETPLYCLLSNGYINNLEILLFMI  132 (489)
T ss_pred             HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHH
Confidence            45788999999999999999864     679999999999764      7888999999999999876   789999999


Q ss_pred             hcCCccccccCCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCccccCCCCCChHHHHHHHc----CCHHHHHHHHhcCC
Q 006802          180 QHMNLETASIPARNGYDSFHVAAKQGH---LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ----GHIDVVNFLLEIDS  252 (630)
Q Consensus       180 ~~~~~~~~~~~~~~g~t~Lh~A~~~g~---~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~----g~~e~v~~LL~~~~  252 (630)
                      ++  +++++..+.+|.||||+|+..|+   .++++.|++.|.++....+..|.||||.++..    ++.+++++|+++|+
T Consensus       133 ~~--Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga  210 (489)
T PHA02798        133 EN--GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGF  210 (489)
T ss_pred             Hc--CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCC
Confidence            98  56788899999999999999998   99999999999986655567899999998764    48999999999999


Q ss_pred             chhhhhccCCCcHHH-------HHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccc
Q 006802          253 NLAKIARNNGKTVLH-------SAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL  325 (630)
Q Consensus       253 ~~~~~~d~~g~tpLh-------~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~  325 (630)
                      ++ +..+..|.++++       .+...++.+++++|+. +.+++.. |..|+||||+|+..|+.+++++|++.|+++ +.
T Consensus       211 ~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~dvN~~-d~~G~TPL~~A~~~~~~~~v~~LL~~GAdi-n~  286 (489)
T PHA02798        211 II-NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YIDINQV-DELGFNPLYYSVSHNNRKIFEYLLQLGGDI-NI  286 (489)
T ss_pred             Cc-ccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCCCCCc-CcCCccHHHHHHHcCcHHHHHHHHHcCCcc-cc
Confidence            87 566777888876       2445677888988876 4777654 899999999999999999999999999887 99


Q ss_pred             cCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCC
Q 006802          326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG  364 (630)
Q Consensus       326 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G  364 (630)
                      +|..|+||||+|+..++.++++.|++ .+++++..+...
T Consensus       287 ~d~~G~TpL~~A~~~~~~~iv~~lL~-~~~~~~~i~~~~  324 (489)
T PHA02798        287 ITELGNTCLFTAFENESKFIFNSILN-KKPNKNTISYTY  324 (489)
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHc-cCCCHHHHHHHH
Confidence            99999999999999999999999999 788887654433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.4e-29  Score=264.88  Aligned_cols=211  Identities=32%  Similarity=0.442  Sum_probs=183.9

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcC
Q 006802          160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG  239 (630)
Q Consensus       160 ~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  239 (630)
                      .+-++.|+..|..+.|+.|++.. +..++..|.+|.|+||+|+.+++.+++++|+++++++...-..-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            34577888888888888888874 56677778888899999999999999999999988866555577889999999999


Q ss_pred             CHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCC
Q 006802          240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD  319 (630)
Q Consensus       240 ~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~  319 (630)
                      +..+|.+|+++|+++ ...|.+|.+|||+|+..|+.-+|-+|+.++.+++.+ |.+|+||||+|+..|....+..|++-+
T Consensus       124 ~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~-D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLR-DNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCc-CCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            999999999999997 888999999999999999999999999999888765 999999999999999988899999988


Q ss_pred             CCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHc
Q 006802          320 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  374 (630)
Q Consensus       320 ~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~  374 (630)
                      +.+.-..|.+|+||||+|+..|+..++.+|++ .|++.+..|.+|+||+++|.+.
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~-g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLE-GGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcceEehhhh-cCCcccccccCCCCHHHHHHHh
Confidence            88744444999999999999999999995555 8999999999999999999876

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=6.1e-30  Score=256.24  Aligned_cols=198  Identities=25%  Similarity=0.323  Sum_probs=165.5

Q ss_pred             CccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHH
Q 006802           72 STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDL  151 (630)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  151 (630)
                      ..+++++--+.-.|+.+..+.+   +++.-.. .........|--+..|-+||..|+..|++++|+.|++.+.+      
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyL---le~~~a~-~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~------  109 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYL---LEHCRAS-PEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS------  109 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHH---HHHhcCC-ccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc------
Confidence            3455776667777777766533   3322111 11112234445567899999999999999999999999753      


Q ss_pred             hhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChH
Q 006802          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA  231 (630)
Q Consensus       152 l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tp  231 (630)
                      +|.......|||--||..|++|+|++|+++  +.++++.|..|.|+||+|+..||.+|+++|++.+++ ++.++..|.|+
T Consensus       110 VN~tT~TNStPLraACfDG~leivKyLvE~--gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD-vn~ks~kGNTA  186 (615)
T KOG0508|consen  110 VNDTTRTNSTPLRAACFDGHLEIVKYLVEH--GADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD-VNAKSYKGNTA  186 (615)
T ss_pred             cccccccCCccHHHHHhcchhHHHHHHHHc--CCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC-cchhcccCchH
Confidence            788888889999999999999999999988  788899999999999999999999999999999999 56789999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhC
Q 006802          232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK  284 (630)
Q Consensus       232 L~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~  284 (630)
                      ||.|+..|+.|++++|+.+|+..  ..|..|.|||..|+..|+.++|+.|+..
T Consensus       187 LH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  187 LHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             HHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            99999999999999999999876  3577799999999999999999999953

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.5e-28  Score=260.14  Aligned_cols=280  Identities=11%  Similarity=0.067  Sum_probs=175.2

Q ss_pred             CCCCCCCCCChHHHHHHH-cCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHH-hCCHHHHHHHHhcCCcc----
Q 006802          112 NKDSPGKRGDLQLHLAAR-AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE-SGHALIVEEMLQHMNLE----  185 (630)
Q Consensus       112 ~~~~~~~~g~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~-~g~~eiv~~LL~~~~~~----  185 (630)
                      .++..|.+|.+++|+-|. .|++|+|++|+++|++      ++.++..|.||||+|+. .|+.|++++|++++...    
T Consensus        63 ~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~  136 (631)
T PHA02792         63 SVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLE------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNI  136 (631)
T ss_pred             CCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCC------cccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccc
Confidence            345677778888876544 6788888888888764      56667778888888865 58888888888875320    


Q ss_pred             ------------------------------ccccCCCCCCcHHHHHHHcC-------CHHHHHHHHhcCCCccccCCCCC
Q 006802          186 ------------------------------TASIPARNGYDSFHVAAKQG-------HLEVLKELLGEFPNLVMTTDLSC  228 (630)
Q Consensus       186 ------------------------------~~~~~~~~g~t~Lh~A~~~g-------~~eiv~~Ll~~~~~~~~~~d~~g  228 (630)
                                                    ..+..+..|.||||+|+.++       +.|+++.|++++++. +..|..|
T Consensus       137 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g  215 (631)
T PHA02792        137 QYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYRE  215 (631)
T ss_pred             ccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCC
Confidence                                          12245566888888888888       788888888888874 4567778


Q ss_pred             ChHHHHHHHcC--CHHHHHHHHhcCCchh------------hh------hc-----c--CCCc-----------------
Q 006802          229 STALHTAAAQG--HIDVVNFLLEIDSNLA------------KI------AR-----N--NGKT-----------------  264 (630)
Q Consensus       229 ~tpL~~Aa~~g--~~e~v~~LL~~~~~~~------------~~------~d-----~--~g~t-----------------  264 (630)
                      .||||+|+...  +.|++++|++..-+..            ..      .|     .  .|.+                 
T Consensus       216 ~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~  295 (631)
T PHA02792        216 HTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIII  295 (631)
T ss_pred             ChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHH
Confidence            88888888887  6777777765311000            00      00     0  0111                 


Q ss_pred             -------------HHHHHHHcC--CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCC
Q 006802          265 -------------VLHSAARMG--HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK  329 (630)
Q Consensus       265 -------------pLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~  329 (630)
                                   .||.-...+  +.+++++|++.|.+..   ...+.++++.|+..|+.+++++|+++|+++ +.+|.+
T Consensus       296 ~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~  371 (631)
T PHA02792        296 SSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDN  371 (631)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCC
Confidence                         122222333  3566666666666543   122444566666666666666666666554 555554


Q ss_pred             C--ChHHHHHHHhCcH---HHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHH
Q 006802          330 G--NTALHIAIKKGRT---QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ  403 (630)
Q Consensus       330 G--~TpLh~A~~~g~~---~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~  403 (630)
                      |  .||||.|+.....   +++++|++ +|+|+|.+|..|.||||+|+..++.+++++|+++|++....+..+.++...
T Consensus       372 g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~  449 (631)
T PHA02792        372 IINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGI  449 (631)
T ss_pred             CCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            3  4666665554433   24555565 566666666666666666666666666666666666666655555555443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=7.5e-29  Score=259.35  Aligned_cols=209  Identities=28%  Similarity=0.343  Sum_probs=189.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC-CCCCcHHHH
Q 006802          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGYDSFHV  200 (630)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~-~~g~t~Lh~  200 (630)
                      +-++.|+..|+++.|+.+++...     ..++..|.+|.|+||+||.+++.+++++|++++  ++++... .-+.||||+
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g-----~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g--advn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEG-----ESVNNPDREGVTLLHWAAINNRLDVARYLISHG--ADVNAIGGVLGSTPLHW  118 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcC-----cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcC--CCccccCCCCCCCcchH
Confidence            45889999999999999998721     237888999999999999999999999999994  4555544 668899999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHH
Q 006802          201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA  280 (630)
Q Consensus       201 A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~  280 (630)
                      |+++|+..++++|+++|++ +...|.+|.+|||.|+..|+.-.|-+||.++.+. +.+|.+|+||||+|+.+|+...+..
T Consensus       119 Aar~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~  196 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRR  196 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHH
Confidence            9999999999999999999 6778999999999999999999999999999776 8999999999999999999888999


Q ss_pred             HHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHh
Q 006802          281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  340 (630)
Q Consensus       281 Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~  340 (630)
                      |++.++......|.+|.||||+|+..|+..++. |+..++...+.+|.+|.||+.+|.++
T Consensus       197 LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  197 LLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHhcccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            999999999887799999999999999999999 66666666699999999999999887

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.1e-26  Score=244.95  Aligned_cols=278  Identities=15%  Similarity=0.064  Sum_probs=212.6

Q ss_pred             ccCCCCCCCCCChHHHHHHHcCC----HHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHH-HHhCCHHHHHHHHhcCCc
Q 006802          110 KKNKDSPGKRGDLQLHLAARAGN----LSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA-AESGHALIVEEMLQHMNL  184 (630)
Q Consensus       110 ~~~~~~~~~~g~T~Lh~Aa~~g~----~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~A-a~~g~~eiv~~LL~~~~~  184 (630)
                      ++++-. ..+|.||||+=....+    .+++..|+..         .+..|-+|.+|+|+- ...|++|+|++|+++  +
T Consensus        28 g~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~--G   95 (631)
T PHA02792         28 GANPLY-EYDGETPLKAYVTKKNNNIKNDVVILLLSS---------VDYKNINDFDIFEYLCSDNIDIELLKLLISK--G   95 (631)
T ss_pred             CCCccc-ccCCCccHHHHHhhhhhhHHHHHHHHHHhC---------CCcCccCCccHHHHHHHhcccHHHHHHHHHc--C
Confidence            444444 5677899999866655    2344444433         356688899999875 458899999999998  6


Q ss_pred             cccccCCCCCCcHHHHHHH-cCCHHHHHHHHhcCCCc-----------------------------------cccCCCCC
Q 006802          185 ETASIPARNGYDSFHVAAK-QGHLEVLKELLGEFPNL-----------------------------------VMTTDLSC  228 (630)
Q Consensus       185 ~~~~~~~~~g~t~Lh~A~~-~g~~eiv~~Ll~~~~~~-----------------------------------~~~~d~~g  228 (630)
                      ++++..+..|.+|+|+|+. .++.|++++|++.|++.                                   .+..|..|
T Consensus        96 AdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  175 (631)
T PHA02792         96 LEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMG  175 (631)
T ss_pred             CCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCC
Confidence            7778888889999999966 69999999999998752                                   11345679


Q ss_pred             ChHHHHHHHcC-------CHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcc--------
Q 006802          229 STALHTAAAQG-------HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG--HLEVVKALVSKDPSTGFR--------  291 (630)
Q Consensus       229 ~tpL~~Aa~~g-------~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~--------  291 (630)
                      .||||+|+..+       +.|+++.|+++|+++ +..|..|.||||+|+.+.  ..|+++.|++..-+-...        
T Consensus       176 ~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~  254 (631)
T PHA02792        176 KTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYL  254 (631)
T ss_pred             CchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHH
Confidence            99999999999       899999999999998 667889999999999999  789999998742211100        


Q ss_pred             ----------cC-------CCCCch------------------------------hhhhccCC--CHHHHHHhhcCCCCc
Q 006802          292 ----------TD-------KKGQTA------------------------------LHMAVKGQ--NEDIVLELIRPDPSV  322 (630)
Q Consensus       292 ----------~d-------~~g~t~------------------------------Lh~Aa~~g--~~~iv~~Ll~~~~~~  322 (630)
                                .|       -.|.+|                              ||.=..++  +.+++++|++.|...
T Consensus       255 ~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~  334 (631)
T PHA02792        255 RKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL  334 (631)
T ss_pred             HHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc
Confidence                      00       011221                              22222333  568899999999875


Q ss_pred             ccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCC--CCHHHHHHHcCCH---HHHHHHHHcCCCCcccCCCC
Q 006802          323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG--ESPLDVAEKLGNT---ELFSLLKEAGAAHSKDHGKP  397 (630)
Q Consensus       323 ~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G--~TpL~~A~~~~~~---~iv~~L~~~ga~~~~~~~~~  397 (630)
                      .   ...+..++|.|+..|+.++|++|++ +|+|++.+|..|  .||||+|......   +++++|+++||+.+..+..+
T Consensus       335 ~---r~~~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G  410 (631)
T PHA02792        335 Y---RFKHINKYFQKFDNRDPKVVEYILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHG  410 (631)
T ss_pred             c---cCCcchHHHHHHHcCCHHHHHHHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccC
Confidence            3   2235667999999999999999999 899999999875  6999998877655   46788999999999888888


Q ss_pred             CchHHHH
Q 006802          398 PSATKQL  404 (630)
Q Consensus       398 ~~~~~~l  404 (630)
                      .+|....
T Consensus       411 ~TPLh~A  417 (631)
T PHA02792        411 RSILYYC  417 (631)
T ss_pred             cchHHHH
Confidence            8887554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.8e-26  Score=221.03  Aligned_cols=173  Identities=21%  Similarity=0.277  Sum_probs=122.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcC--CHHHHHHHHhcCCchhhhhc-cCCCcHHHHHH
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIAR-NNGKTVLHSAA  270 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g--~~e~v~~LL~~~~~~~~~~d-~~g~tpLh~Aa  270 (630)
                      +.||||.|+..|+.++++.|++.    .+..|..|.||||+|+..+  +.+++++|+++|+++ +..+ ..|.||||+|+
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~   95 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYL   95 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHH
Confidence            34555555555555555555543    2234556666777666543  667777777777766 3333 46777777766


Q ss_pred             Hc---CCHHHHHHHHhCCCCCCcccCCCCCchhhhhcc--CCCHHHHHHhhcCCCCcccccCCCCChHHHH-HHHhCcHH
Q 006802          271 RM---GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK--GQNEDIVLELIRPDPSVLKLEDNKGNTALHI-AIKKGRTQ  344 (630)
Q Consensus       271 ~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~--~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~-A~~~g~~~  344 (630)
                      ..   ++.+++++|++++++++.. |..|.||||+|+.  .++.+++++|++.+.++ +.+|.+|+||||. |+..++.+
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~-d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEE-DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHH
Confidence            43   3577777777777777654 7778888887765  35788888888888776 7788889999985 55677889


Q ss_pred             HHHHHhcccCCCcccccCCCCCHHHHHHHc
Q 006802          345 IVRCLLSIEGIDVNSLNKAGESPLDVAEKL  374 (630)
Q Consensus       345 iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~  374 (630)
                      ++++|++ .|++++.+|..|.||||+|...
T Consensus       174 iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        174 IFDFLTS-LGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHHH-cCCCCCCCCCCCCCHHHHHhhh
Confidence            9999988 7889999999999999988764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.5e-25  Score=216.00  Aligned_cols=179  Identities=15%  Similarity=0.123  Sum_probs=141.8

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCccccCCCCCChHH
Q 006802          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG--HLEVLKELLGEFPNLVMTTDLSCSTAL  232 (630)
Q Consensus       155 ~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~eiv~~Ll~~~~~~~~~~d~~g~tpL  232 (630)
                      ....+.||||.|+..|+.++|+.|++.     .+..+..|.||||+|+..+  +.+++++|++.++++....+..|.|||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpL   91 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSAL   91 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHH
Confidence            355678888888888888888888864     2345677888888888754  788888888888885443345788888


Q ss_pred             HHHHHc---CCHHHHHHHHhcCCchhhhhccCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCcccCCCCCchhhh-hccC
Q 006802          233 HTAAAQ---GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR--MGHLEVVKALVSKDPSTGFRTDKKGQTALHM-AVKG  306 (630)
Q Consensus       233 ~~Aa~~---g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~-Aa~~  306 (630)
                      |+|+..   ++.+++++|+++|+++ +..|.+|.||||.|+.  .++.+++++|++.+.+++.. |..|.||||. |+..
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~-d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK-DFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc-cCCCCcHHHHHHHhc
Confidence            887753   4688888888888887 6778888999988875  46788999999888887764 8888999985 5567


Q ss_pred             CCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhC
Q 006802          307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  341 (630)
Q Consensus       307 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g  341 (630)
                      ++.+++++|++.|.++ +.+|..|.||||+|..++
T Consensus       170 ~~~~iv~~Ll~~Gadi-~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLGIDI-NETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhhh
Confidence            7888888888888766 888889999999988764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.2e-23  Score=242.92  Aligned_cols=178  Identities=24%  Similarity=0.269  Sum_probs=111.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHH-HHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLY-VAAESGHALIVEEMLQHMNLETASIPARNGY  195 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh-~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~  195 (630)
                      -..++++|+.||+.|+.+.|+.+++...    ...++..|..|+|||| .|+..++.++++.|++++.      .+..|.
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~----~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~   83 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPK----KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGD   83 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhcccc----ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcCh
Confidence            3567889999999999999999987754    2346777888999999 8888889999999988732      567788


Q ss_pred             cHHHHHHHcC---CHHHHHHHHhcCCC-----cc----ccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhc----
Q 006802          196 DSFHVAAKQG---HLEVLKELLGEFPN-----LV----MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR----  259 (630)
Q Consensus       196 t~Lh~A~~~g---~~eiv~~Ll~~~~~-----~~----~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d----  259 (630)
                      ||||.|+.++   ..+++..+...++.     ..    ...+..|.||||+|+..|+.+++++|+++|+++. ..+    
T Consensus        84 T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~~~  162 (743)
T TIGR00870        84 TLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARACGDF  162 (743)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCCch
Confidence            9999888732   22333333333322     00    1122457777887777777777777777777763 111    


Q ss_pred             ----------cCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccC
Q 006802          260 ----------NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  306 (630)
Q Consensus       260 ----------~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  306 (630)
                                ..|.||||.|+..|+.+++++|++.+++++.. |..|+||||+|+..
T Consensus       163 ~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~-d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       163 FVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA-DSLGNTLLHLLVME  218 (743)
T ss_pred             hhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH-hhhhhHHHHHHHhh
Confidence                      12444444444444444444444444443332 44444444444443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=7.4e-25  Score=228.67  Aligned_cols=205  Identities=17%  Similarity=0.093  Sum_probs=154.6

Q ss_pred             HHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-----ccCCCCCChHHHHHHH--cCCHHHHHHHH
Q 006802          176 EEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLV-----MTTDLSCSTALHTAAA--QGHIDVVNFLL  248 (630)
Q Consensus       176 ~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~-----~~~d~~g~tpL~~Aa~--~g~~e~v~~LL  248 (630)
                      ++++.++  .+++....+|     +|+..+..|+++.|+.++.+..     -..+..++|+||+++.  .|+.++|++|+
T Consensus        66 ~~~~~~~--~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         66 DYFRIHR--DNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHcC--cchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            5566652  3333333333     7777788888888888777733     1356667888888888  78888888888


Q ss_pred             hcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc-----CCCCCchhhhhccCCCHHHHHHhhcCCCCcc
Q 006802          249 EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT-----DKKGQTALHMAVKGQNEDIVLELIRPDPSVL  323 (630)
Q Consensus       249 ~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-----d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~  323 (630)
                      ++|+++ +.  .++.||||.|+..|+.+++++|+++|++.....     +..+.|++|.|+..++.+++++|+++|+++ 
T Consensus       139 ~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-  214 (437)
T PHA02795        139 DHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-  214 (437)
T ss_pred             HCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-
Confidence            888876 33  345788888888888888888888876433221     134678888888888888888888888776 


Q ss_pred             cccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCC--------HHHHHHHHHcCCCCcc
Q 006802          324 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN--------TELFSLLKEAGAAHSK  392 (630)
Q Consensus       324 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~--------~~iv~~L~~~ga~~~~  392 (630)
                      |.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+        .+++++|+++|++...
T Consensus       215 N~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        215 NQLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            8888888888888888888888888888 788888888888888888888873        5888888888887654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=8.1e-26  Score=205.88  Aligned_cols=239  Identities=26%  Similarity=0.309  Sum_probs=203.2

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 006802          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (630)
Q Consensus       116 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~  195 (630)
                      ++..|+.-+-.|.+.|+.+.+...+.-.++.     ....+.+|+++++.|+-.|+.+.+..+|.+  +...+..+..++
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-----~~~t~p~g~~~~~v~ap~~s~~k~sttltN--~~rgnevs~~p~  130 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDA-----IDETDPEGWSALLVAAPCGSVDKVSTTLTN--GARGNEVSLMPW  130 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCC-----CCCCCchhhhhhhhcCCCCCcceeeeeecc--cccCCccccccC
Confidence            3566777788899999999888888766532     566778899999999999999999999987  344555677889


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      +|+.+++...+.+.+..+.++   .++..|+.|.|||.+|+..|+.++|++||+.|+++ ....+...++|.+|++.|..
T Consensus       131 s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggyt  206 (296)
T KOG0502|consen  131 SPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYT  206 (296)
T ss_pred             ChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChH
Confidence            999999999888888766554   35678999999999999999999999999999997 67778888999999999999


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCC
Q 006802          276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI  355 (630)
Q Consensus       276 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  355 (630)
                      ++|++||+++++.+.. |.+|-|||-+|++.++.++++.|+..|+++ +..|..|++++.+|+..|+. +|+..++ ..+
T Consensus       207 diV~lLL~r~vdVNvy-DwNGgTpLlyAvrgnhvkcve~Ll~sGAd~-t~e~dsGy~~mdlAValGyr-~Vqqvie-~h~  282 (296)
T KOG0502|consen  207 DIVELLLTREVDVNVY-DWNGGTPLLYAVRGNHVKCVESLLNSGADV-TQEDDSGYWIMDLAVALGYR-IVQQVIE-KHA  282 (296)
T ss_pred             HHHHHHHhcCCCccee-ccCCCceeeeeecCChHHHHHHHHhcCCCc-ccccccCCcHHHHHHHhhhH-HHHHHHH-HHH
Confidence            9999999999999876 999999999999999999999999999887 88889999999999999987 8888888 566


Q ss_pred             CcccccCCCCCHHH
Q 006802          356 DVNSLNKAGESPLD  369 (630)
Q Consensus       356 ~in~~n~~G~TpL~  369 (630)
                      ..+.+|+.-.||+|
T Consensus       283 lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  283 LKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHhhcccCCCCCC
Confidence            77777777777764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=1.4e-24  Score=226.68  Aligned_cols=215  Identities=17%  Similarity=0.145  Sum_probs=167.4

Q ss_pred             HHHHhCCHHHHHHHHhcCCccc----cccCCCCCCcHHHHHHH--cCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHc
Q 006802          165 VAAESGHALIVEEMLQHMNLET----ASIPARNGYDSFHVAAK--QGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ  238 (630)
Q Consensus       165 ~Aa~~g~~eiv~~LL~~~~~~~----~~~~~~~g~t~Lh~A~~--~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  238 (630)
                      +|+..+..|++++|+.++...+    .-..+..++|+||.++.  .|+.+++++|+++|+++..   .++.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHc
Confidence            7778888888888887743322    00356667888888887  7888888888888887532   2447888888888


Q ss_pred             CCHHHHHHHHhcCCchhhhh-----ccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHH
Q 006802          239 GHIDVVNFLLEIDSNLAKIA-----RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL  313 (630)
Q Consensus       239 g~~e~v~~LL~~~~~~~~~~-----d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~  313 (630)
                      |+.+++++|+++|++..+..     +..|.+++|.|+..++.+++++|+++|++++.. |..|.||||+|+..|+.++++
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~k-D~~G~TpLh~Aa~~g~~eiVe  238 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQL-DAGGRTLLYRAIYAGYIDLVS  238 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcC-CCCCCCHHHHHHHcCCHHHHH
Confidence            88888888888886432222     234778999999999999999999999998865 999999999999999999999


Q ss_pred             HhhcCCCCcccccCCCCChHHHHHHHhCc--------HHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 006802          314 ELIRPDPSVLKLEDNKGNTALHIAIKKGR--------TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  385 (630)
Q Consensus       314 ~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~--------~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~  385 (630)
                      +|++.|+++ +.+|..|.||||+|+..|+        .+++++|++ .|++++.....   ++..  ...+.++++.+++
T Consensus       239 lLL~~GAdI-N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~~~~~---~~~~--~~~n~~~ik~lI~  311 (437)
T PHA02795        239 WLLENGANV-NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDCIKLA---ILNN--TIENHDVIKLCIK  311 (437)
T ss_pred             HHHHCCCCC-CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCchhHH---hhhc--ccchHHHHHHHHH
Confidence            999999877 8999999999999999984        699999998 88888765432   2221  1226788888888


Q ss_pred             cCCCC
Q 006802          386 AGAAH  390 (630)
Q Consensus       386 ~ga~~  390 (630)
                      ++...
T Consensus       312 y~~~l  316 (437)
T PHA02795        312 YFMMV  316 (437)
T ss_pred             HHHhc
Confidence            87644

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=6.5e-25  Score=232.03  Aligned_cols=247  Identities=29%  Similarity=0.392  Sum_probs=215.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcChhh-------hhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 006802          121 DLQLHLAARAGNLSRVMEILQSCDANE-------AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (630)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-------~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~  193 (630)
                      ++-|--|++.|+.+.+..||+......       ..+-.+..|.+|.|+||.|+.+|+.+++++|+++  ...+.+.+..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~--ea~ldl~d~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY--EALLDLCDTK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc--hhhhhhhhcc
Confidence            355888999999999999998643211       1234677788999999999999999999999998  5566777889


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG  273 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g  273 (630)
                      |.+|||+|+++|+.|+++.++..+ +..+..+..|.||||.|+..||.+++.+|+.++++. .+.+..+.|+|.+|++.|
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFG  159 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhh
Confidence            999999999999999999999888 557788899999999999999999999999999997 678999999999999999


Q ss_pred             CHHHHHHHHhCCCCC-------CcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHH
Q 006802          274 HLEVVKALVSKDPST-------GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  346 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv  346 (630)
                      ..++++.|+...-..       ...++-.+.+|||+|+++|+.++++.|++.|-++ |....+| |+||-|+..|..++|
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~di-n~~t~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDI-NYTTEDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCc-ccccccc-hhhhhHhhcCcchhh
Confidence            999999999862111       1224556889999999999999999999999887 7766665 999999999999999


Q ss_pred             HHHhcccCCCcccccCCCCCHHHHHHHc
Q 006802          347 RCLLSIEGIDVNSLNKAGESPLDVAEKL  374 (630)
Q Consensus       347 ~~Ll~~~g~~in~~n~~G~TpL~~A~~~  374 (630)
                      .+|++ .|++.+.+|.+|+|+|++....
T Consensus       238 r~ll~-~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  238 RFLLE-IGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hHHHh-hccccccccccchHHHHHHHhc
Confidence            99999 8999999999999999988765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=3.6e-24  Score=226.43  Aligned_cols=244  Identities=25%  Similarity=0.299  Sum_probs=213.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCC-----------ccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCC
Q 006802          161 TPLYVAAESGHALIVEEMLQHMN-----------LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCS  229 (630)
Q Consensus       161 TpLh~Aa~~g~~eiv~~LL~~~~-----------~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~  229 (630)
                      +=|.-|+..|+.+.|..||+...           ....+..|.+|+|+||.|+.+|+.+++++|++..+- ....|..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~-ldl~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL-LDLCDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh-hhhhhccCc
Confidence            34677999999999999998732           234567788999999999999999999999998876 455678999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCH
Q 006802          230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  309 (630)
Q Consensus       230 tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~  309 (630)
                      +|||+|+..|+.++++.|+..+..+ +.....|.||||.|+.+||.+++.+|+.++++.... |..++|+|.+|++.|+.
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~-nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIR-NNSKETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhcchHHHHHHHhcCCCcccc-CcccccHHHHHHHhhhh
Confidence            9999999999999999999998554 778889999999999999999999999999999876 99999999999999999


Q ss_pred             HHHHHhhcCCCCc-------ccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHH
Q 006802          310 DIVLELIRPDPSV-------LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL  382 (630)
Q Consensus       310 ~iv~~Ll~~~~~~-------~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~  382 (630)
                      +++..|+...-..       -..++..+-+|||+|+++|+.++++.|++ .|.++|...+.| |+||-|+.+|..+++.+
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaalcgk~evvr~  239 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAALCGKAEVVRF  239 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhhcCcchhhhH
Confidence            9999998762110       12356678899999999999999999999 999999988877 89999999999999999


Q ss_pred             HHHcCCCCcccCCCCCchHHHHHHHHh
Q 006802          383 LKEAGAAHSKDHGKPPSATKQLKQTVS  409 (630)
Q Consensus       383 L~~~ga~~~~~~~~~~~~~~~l~~~~~  409 (630)
                      |++.|......+..+++..+.+.+..+
T Consensus       240 ll~~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  240 LLEIGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             HHhhccccccccccchHHHHHHHhcch
Confidence            999999999999988888777654433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1e-23  Score=243.33  Aligned_cols=227  Identities=26%  Similarity=0.235  Sum_probs=182.0

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH-HHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHH
Q 006802          157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH-VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA  235 (630)
Q Consensus       157 ~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh-~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~A  235 (630)
                      ..++.+++.|++.|+.+.|+.+++.....+.+..|..|.|||| .|+.+++.++++.|++.+.     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            3567899999999999999999987556677888899999999 8999999999999998876     577899999999


Q ss_pred             HHcC---CHHHHHHHHhcCCch-----h----hhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc-----------
Q 006802          236 AAQG---HIDVVNFLLEIDSNL-----A----KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT-----------  292 (630)
Q Consensus       236 a~~g---~~e~v~~LL~~~~~~-----~----~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-----------  292 (630)
                      +..+   ..++++.+...+.+.     .    ......|.||||+|+.+|+.++|+.|+++|++++...           
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            8722   233444444444321     0    1123569999999999999999999999999887431           


Q ss_pred             --CCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhC---------cHHHHHHHhcccCCC---c-
Q 006802          293 --DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG---------RTQIVRCLLSIEGID---V-  357 (630)
Q Consensus       293 --d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g---------~~~iv~~Ll~~~g~~---i-  357 (630)
                        ...|+||||.|+..|+.++++.|+++++++ +.+|..|+||||+|+..+         ...+.+++++ .++.   . 
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~-ll~~~~~~~  247 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALS-LLDKLRDSK  247 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHhccCChH
Confidence              135899999999999999999999998865 899999999999999987         2335555555 3333   3 


Q ss_pred             ---ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          358 ---NSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       358 ---n~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                         +..|++|.||||+|+..|+.+++++|++.+.+.
T Consensus       248 el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~  283 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQ  283 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhc
Confidence               677999999999999999999999999966543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13962 PGG: Domain of unknown function

Probab=99.90  E-value=7.4e-24  Score=183.73  Aligned_cols=111  Identities=35%  Similarity=0.526  Sum_probs=94.4

Q ss_pred             cccccccchhHHHHHHHHHHHHhhhcCCCCccccccccCCCCccccccccc-chhHHHHHhHHHHHHHHHHHHHHHHhhh
Q 006802          442 SGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNA-AFIIFFVFDSLALFISLAVVVVQTSVVV  520 (630)
Q Consensus       442 e~l~~~~~s~~~va~liatv~f~a~~~~pgg~~~~~~~~~~~g~~~l~~~~-~f~~F~~~~~~a~~~S~~~~~~~~~i~~  520 (630)
                      ||++++++++++||+|||||||+|+|+||||||+|++   ..|+|++.+++ .|.+|+++|++||++|+++++++++.+.
T Consensus         2 ~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~---~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~   78 (113)
T PF13962_consen    2 KWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD---DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLD   78 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc---CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5677889999999999999999999999999998762   67999999888 8999999999999999999998884221


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006802          521 IEEKAKRQLVFVINKLMWLACLFISIAFISLTYVV  555 (630)
Q Consensus       521 ~~~~~~~~~~~~~~~l~~~~~~~~~~af~~~~~~~  555 (630)
                      ...+..+........+||+++.+|.+||++|+|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   79 DFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            11222334566778999999999999999999976

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=5.5e-24  Score=193.96  Aligned_cols=251  Identities=25%  Similarity=0.281  Sum_probs=212.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHH
Q 006802          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHV  200 (630)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~  200 (630)
                      -..|..+...|-.+--..|.....        .-++..|+.-+-.|.+.|+.+++..++.... +.+...+++|+.+++.
T Consensus        32 ~a~~~~~~~m~~t~p~~~l~~~~s--------~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~-~~~~~t~p~g~~~~~v  102 (296)
T KOG0502|consen   32 IAELFEQVEMGTTEPRCALTAEIS--------ALRNALGESLLTVAVRSGNSDVAVQSAQLDP-DAIDETDPEGWSALLV  102 (296)
T ss_pred             HHHHHHHhhccccchhHHHHHHHH--------HHHHhcCCcccchhhhcCCcHHHHHhhccCC-CCCCCCCchhhhhhhh
Confidence            345667776666665555654422        2345677888889999999999888887633 3344567789999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHH
Q 006802          201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA  280 (630)
Q Consensus       201 A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~  280 (630)
                      ++-.|+.+.+...+.++.. .+..+..+.+|+.+++.+.+++.+..+.+.   ..+..|..|.|||.||+..|++++|++
T Consensus       103 ~ap~~s~~k~sttltN~~r-gnevs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~f  178 (296)
T KOG0502|consen  103 AAPCGSVDKVSTTLTNGAR-GNEVSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQF  178 (296)
T ss_pred             cCCCCCcceeeeeeccccc-CCccccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHH
Confidence            9999999999999988877 456788899999999999999988877764   346789999999999999999999999


Q ss_pred             HHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccc
Q 006802          281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL  360 (630)
Q Consensus       281 Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~  360 (630)
                      ||+.|+++... .+...++|.+|++.|..++|+.|+..+.++ |..|-+|-|||-+|++-++.++|+.|++ .|++++..
T Consensus       179 LL~~GAdp~~l-gk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e  255 (296)
T KOG0502|consen  179 LLNSGADPDAL-GKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQE  255 (296)
T ss_pred             HHHcCCChhhh-hhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCceeeeeecCChHHHHHHHHh-cCCCcccc
Confidence            99999998765 778889999999999999999999999887 9999999999999999999999999999 89999999


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 006802          361 NKAGESPLDVAEKLGNTELFSLLKEAGA  388 (630)
Q Consensus       361 n~~G~TpL~~A~~~~~~~iv~~L~~~ga  388 (630)
                      +..|++++++|+..|+. +|+..++.-+
T Consensus       256 ~dsGy~~mdlAValGyr-~Vqqvie~h~  282 (296)
T KOG0502|consen  256 DDSGYWIMDLAVALGYR-IVQQVIEKHA  282 (296)
T ss_pred             cccCCcHHHHHHHhhhH-HHHHHHHHHH
Confidence            99999999999999998 5655555433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=8.9e-23  Score=236.91  Aligned_cols=195  Identities=26%  Similarity=0.303  Sum_probs=168.7

Q ss_pred             CCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHh
Q 006802          170 GHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE  249 (630)
Q Consensus       170 g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~  249 (630)
                      ...++-..+.+..    ....+.++.++||.||..|+.++++.|++.+.+ ++..|..|.||||+|+..|+.+++++|++
T Consensus       505 ~~l~v~~ll~~~~----~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~  579 (823)
T PLN03192        505 HDLNVGDLLGDNG----GEHDDPNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLK  579 (823)
T ss_pred             ccccHHHHHhhcc----cccCCccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHh
Confidence            3444444454442    122445677999999999999999999999988 56789999999999999999999999999


Q ss_pred             cCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCC
Q 006802          250 IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK  329 (630)
Q Consensus       250 ~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~  329 (630)
                      +|+++ +..|.+|.||||.|+..|+.+++++|++.+....   ...|.++||.|+..|+.++++.|+++++++ |.+|.+
T Consensus       580 ~gadi-n~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~  654 (823)
T PLN03192        580 HACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQ  654 (823)
T ss_pred             cCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCC
Confidence            99987 7789999999999999999999999998766543   456789999999999999999999999887 899999


Q ss_pred             CChHHHHHHHhCcHHHHHHHhcccCCCcccccCCC-CCHHHHHHHcC
Q 006802          330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG-ESPLDVAEKLG  375 (630)
Q Consensus       330 G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G-~TpL~~A~~~~  375 (630)
                      |+||||+|+..|+.+++++|++ .|++++..|..| .||++++....
T Consensus       655 G~TpLh~A~~~g~~~iv~~Ll~-~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        655 GATALQVAMAEDHVDMVRLLIM-NGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCHHHHHHHCCcHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999 899999999988 99998876543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.89  E-value=4.8e-23  Score=223.06  Aligned_cols=280  Identities=25%  Similarity=0.258  Sum_probs=222.4

Q ss_pred             ccccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccc
Q 006802          108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETA  187 (630)
Q Consensus       108 ~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~  187 (630)
                      .+++++..+|+.|.+||.+|+-.||..+|+.|+....+.     -...|..++|+|-+||..|+.++|++||..  +.+.
T Consensus       778 ~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~v-----eaQsdrtkdt~lSlacsggr~~vvelLl~~--gank  850 (2131)
T KOG4369|consen  778 VRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV-----EAQSDRTKDTMLSLACSGGRTRVVELLLNA--GANK  850 (2131)
T ss_pred             HhcccccccccccchhhhhhcccCchHHHHHHHhhhhhh-----hhhcccccCceEEEecCCCcchHHHHHHHh--hccc
Confidence            356788889999999999999999999999999876543     234577889999999999999999999987  4455


Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccC-CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHH
Q 006802          188 SIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTT-DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL  266 (630)
Q Consensus       188 ~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~-d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpL  266 (630)
                      ..++-..+|||.+|...|..++++.|+..|.++.... ..-|..||.+|...||.+.++.||+.|.+++.....+.+|+|
T Consensus       851 ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTal  930 (2131)
T KOG4369|consen  851 EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTAL  930 (2131)
T ss_pred             cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccce
Confidence            5566777899999999999999999998887765433 346778999999999999999999988888666677788888


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccc-cCCCCChHHHHHHHhCcHHH
Q 006802          267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL-EDNKGNTALHIAIKKGRTQI  345 (630)
Q Consensus       267 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~-~d~~G~TpLh~A~~~g~~~i  345 (630)
                      -+|+..|..+++.+||...+....+ -+.|-|||+-++..|..++=+.|+..|++..-. .-....|+|-+++..||...
T Consensus       931 tla~fqgr~evv~lLLa~~anvehR-aktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kf 1009 (2131)
T KOG4369|consen  931 TLALFQGRPEVVFLLLAAQANVEHR-AKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKF 1009 (2131)
T ss_pred             eeccccCcchHHHHHHHHhhhhhhh-cccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhh
Confidence            8888888888888888887777665 778888888888888888888888887765211 12234577888888888888


Q ss_pred             HHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Q 006802          346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK  396 (630)
Q Consensus       346 v~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~  396 (630)
                      |..|+. ..+.+..+|++|+|+|.+|+.-|+...+.+|++++++.+..++.
T Consensus      1010 v~~lln-~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr 1059 (2131)
T KOG4369|consen 1010 VPKLLN-GDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNR 1059 (2131)
T ss_pred             hHHhhC-CccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcc
Confidence            888887 67777888888888888888888888888888888877655544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.88  E-value=3.9e-23  Score=223.74  Aligned_cols=305  Identities=21%  Similarity=0.239  Sum_probs=261.1

Q ss_pred             ccccccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCC-CCCCCCChHHHHHHHcCCHHHHHH
Q 006802           60 QSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKD-SPGKRGDLQLHLAARAGNLSRVME  138 (630)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~T~Lh~Aa~~g~~~~v~~  138 (630)
                      +..+|++++.++..+.+++..+...|+..-..-+.             +..++++ -.|+.++|+|-+||..|+.++|+.
T Consensus       776 lv~rganiehrdkkgf~plImaatagh~tvV~~ll-------------k~ha~veaQsdrtkdt~lSlacsggr~~vvel  842 (2131)
T KOG4369|consen  776 LVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLL-------------KAHADVEAQSDRTKDTMLSLACSGGRTRVVEL  842 (2131)
T ss_pred             HHHhcccccccccccchhhhhhcccCchHHHHHHH-------------hhhhhhhhhcccccCceEEEecCCCcchHHHH
Confidence            35678888888888888887777777654433211             1111221 246789999999999999999999


Q ss_pred             HHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 006802          139 ILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP  218 (630)
Q Consensus       139 Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~  218 (630)
                      ||..+...      ..+|-..+|||-+|...|..+++..||.++...+.....+-|..||++|..+||.+.++.|++.+.
T Consensus       843 Ll~~gank------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gs  916 (2131)
T KOG4369|consen  843 LLNAGANK------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGS  916 (2131)
T ss_pred             HHHhhccc------cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccc
Confidence            99988753      456778899999999999999999999986544445556678999999999999999999999999


Q ss_pred             CccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc-cCCCCC
Q 006802          219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR-TDKKGQ  297 (630)
Q Consensus       219 ~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-~d~~g~  297 (630)
                      +++.....+-+|+|-+|+..|+.|++.+||.+.+++ ..+-+.|.|||+-++..|.+|+-++|+..|+|.+.. .-....
T Consensus       917 diNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv-ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~d  995 (2131)
T KOG4369|consen  917 DINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV-EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWD  995 (2131)
T ss_pred             hhccccccccccceeeccccCcchHHHHHHHHhhhh-hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCC
Confidence            988777778889999999999999999999998887 677889999999999999999999999999997754 234566


Q ss_pred             chhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCH
Q 006802          298 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT  377 (630)
Q Consensus       298 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~  377 (630)
                      |+|-+++..|+...|..|+...+.+ ..++++|+|+|.+|+.-|+...+..|++ .++|++..|+...+++.-|.+.|+.
T Consensus       996 talti~a~kGh~kfv~~lln~~atv-~v~NkkG~T~Lwla~~Gg~lss~~il~~-~~ad~d~qdnr~~S~~maafRKgh~ 1073 (2131)
T KOG4369|consen  996 TALTIPANKGHTKFVPKLLNGDATV-RVPNKKGCTVLWLASAGGALSSCPILVS-SVADADQQDNRTNSRTMAAFRKGHF 1073 (2131)
T ss_pred             ccceeecCCCchhhhHHhhCCccce-ecccCCCCcccchhccCCccccchHHhh-cccChhhhhcccccccHHHHHhchh
Confidence            9999999999999999999877766 8899999999999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 006802          378 ELFSLLKEA  386 (630)
Q Consensus       378 ~iv~~L~~~  386 (630)
                      +||++....
T Consensus      1074 ~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1074 AIVKKMVPP 1082 (2131)
T ss_pred             heeccccCc
Confidence            999887654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=3.5e-21  Score=223.60  Aligned_cols=182  Identities=25%  Similarity=0.298  Sum_probs=160.0

Q ss_pred             HHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 006802          207 LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP  286 (630)
Q Consensus       207 ~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~  286 (630)
                      .++-..+.+.+..   ..+..+.++|+.||..|+.++++.|++.|+++ +..|.+|.||||+|+..|+.++++.|+++++
T Consensus       507 l~v~~ll~~~~~~---~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        507 LNVGDLLGDNGGE---HDDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             ccHHHHHhhcccc---cCCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            3444444443332   23456779999999999999999999999997 7789999999999999999999999999999


Q ss_pred             CCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCC
Q 006802          287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES  366 (630)
Q Consensus       287 ~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~T  366 (630)
                      +++.. |..|.||||.|+..|+.++++.|++.+... +  +..|.++||.|+..|+.++++.|++ .|+|+|.+|..|.|
T Consensus       583 din~~-d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~-~--~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~T  657 (823)
T PLN03192        583 NVHIR-DANGNTALWNAISAKHHKIFRILYHFASIS-D--PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGAT  657 (823)
T ss_pred             CCCCc-CCCCCCHHHHHHHhCCHHHHHHHHhcCccc-C--cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCC
Confidence            98765 999999999999999999999999876543 2  4567899999999999999999999 89999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Q 006802          367 PLDVAEKLGNTELFSLLKEAGAAHSKDHGKP  397 (630)
Q Consensus       367 pL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~  397 (630)
                      |||+|+..|+.+++++|+++||+....+..+
T Consensus       658 pLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        658 ALQVAMAEDHVDMVRLLIMNGADVDKANTDD  688 (823)
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCCCCCCC
Confidence            9999999999999999999999998877665

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=8.3e-22  Score=192.39  Aligned_cols=164  Identities=29%  Similarity=0.385  Sum_probs=147.1

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHc-----CCHHHHHHHHhCCCCCCcccCCC
Q 006802          221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM-----GHLEVVKALVSKDPSTGFRTDKK  295 (630)
Q Consensus       221 ~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~d~~  295 (630)
                      ++..|.+|+|+||||+..+++++|+.||+.|....+..+.-|.||+++++..     .+.++|..|..-+ +++.+-...
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            4567899999999999999999999999998877788889999999998853     4678899998665 444455788


Q ss_pred             CCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcC
Q 006802          296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  375 (630)
Q Consensus       296 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~  375 (630)
                      |+|+|++|+.+|+.++|+.||..++++ |.+|.+|.|+|+.|+++||.||+++||...++|+...|.+|-|+|.+|...|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            999999999999999999999999987 9999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHc
Q 006802          376 NTELFSLLKEA  386 (630)
Q Consensus       376 ~~~iv~~L~~~  386 (630)
                      +.+|.-+|..+
T Consensus       419 h~eIa~mlYa~  429 (452)
T KOG0514|consen  419 HREIAVMLYAH  429 (452)
T ss_pred             chHHHHHHHHH
Confidence            99998877543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-20  Score=194.04  Aligned_cols=228  Identities=25%  Similarity=0.347  Sum_probs=185.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHH
Q 006802          123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA  202 (630)
Q Consensus       123 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~  202 (630)
                      .+..|++.|+.+-|..|+..+..      .+..|.+|.|+||-||...+.+||++|+++  +.+++..|..|+||||.|+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~------~~~~n~DglTalhq~~id~~~e~v~~l~e~--ga~Vn~~d~e~wtPlhaaa  114 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS------PNLCNVDGLTALHQACIDDNLEMVKFLVEN--GANVNAQDNEGWTPLHAAA  114 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC------ccccCCccchhHHHHHhcccHHHHHHHHHh--cCCccccccccCCcchhhc
Confidence            57778899999999999988754      378899999999999999999999999998  6788889999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC----HHHH
Q 006802          203 KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH----LEVV  278 (630)
Q Consensus       203 ~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~----~~iv  278 (630)
                      ..||..++++|++.++++. ..|.+|..|+..+......+++..-...          .|.+  .-|++...    .+=+
T Consensus       115 scg~~~i~~~li~~gA~~~-avNsdg~~P~dl~e~ea~~~~l~~~~~r----------~gi~--iea~R~~~e~~ml~D~  181 (527)
T KOG0505|consen  115 SCGYLNIVEYLIQHGANLL-AVNSDGNMPYDLAEDEATLDVLETEMAR----------QGID--IEAARKAEEQTMLDDA  181 (527)
T ss_pred             ccccHHHHHHHHHhhhhhh-hccCCCCCccccccCcchhHHHHHHHHH----------hccc--HHHHhhhhHHHHHHHH
Confidence            9999999999999999854 4677888888877665555544433322          1222  12221111    1223


Q ss_pred             HHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcc
Q 006802          279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN  358 (630)
Q Consensus       279 ~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in  358 (630)
                      ...+..+...... +..|.|.||+|+.+|..++.+.|++.+.++ +.+|.+|+||||.|+..|..+++++|++ +|++++
T Consensus       182 ~q~l~~G~~~d~~-~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d  258 (527)
T KOG0505|consen  182 RQWLNAGAELDAR-HARGATALHVAAANGYTEVAALLLQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVE-HGADMD  258 (527)
T ss_pred             HHHHhcccccccc-ccccchHHHHHHhhhHHHHHHHHHHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHH-hhcccc
Confidence            3334466666655 555999999999999999999999999887 8999999999999999999999999998 899999


Q ss_pred             cccCCCCCHHHHHHHc
Q 006802          359 SLNKAGESPLDVAEKL  374 (630)
Q Consensus       359 ~~n~~G~TpL~~A~~~  374 (630)
                      ..+..|.||+++|...
T Consensus       259 ~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  259 AKTKMGETPLDVADEE  274 (527)
T ss_pred             hhhhcCCCCccchhhh
Confidence            9999999999998763

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-20  Score=184.23  Aligned_cols=165  Identities=27%  Similarity=0.335  Sum_probs=148.3

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHH-----cCCHHHHHHHHhcCCchhhhhcc
Q 006802          186 TASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA-----QGHIDVVNFLLEIDSNLAKIARN  260 (630)
Q Consensus       186 ~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~-----~g~~e~v~~LL~~~~~~~~~~d~  260 (630)
                      .+++.|.+|+|+||||+..+|+++|+.||+.+...++..|..|.||.++|+.     ..+.++|..|...|.- +.....
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV-NaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV-NAKASQ  338 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc-chhhhh
Confidence            3567889999999999999999999999999988888999999999999886     3578899999988743 344567


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHh
Q 006802          261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  340 (630)
Q Consensus       261 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~  340 (630)
                      .|.|+|++|+.+|+.++|+.||..+++++.. |.+|.|+|++|+++|+.|+++.||......+...|.+|.|+|.+|...
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAlea  417 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEA  417 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhc
Confidence            8999999999999999999999999999986 999999999999999999999999998887889999999999999999


Q ss_pred             CcHHHHHHHhcc
Q 006802          341 GRTQIVRCLLSI  352 (630)
Q Consensus       341 g~~~iv~~Ll~~  352 (630)
                      |+.+|.-+|..+
T Consensus       418 gh~eIa~mlYa~  429 (452)
T KOG0514|consen  418 GHREIAVMLYAH  429 (452)
T ss_pred             CchHHHHHHHHH
Confidence            999999888763

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.5e-19  Score=168.85  Aligned_cols=138  Identities=18%  Similarity=0.287  Sum_probs=97.6

Q ss_pred             hhccCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHH---HHHhhcCCCCcccccC-C
Q 006802          257 IARNNGKTVLHSAARMGHL----EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI---VLELIRPDPSVLKLED-N  328 (630)
Q Consensus       257 ~~d~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~i---v~~Ll~~~~~~~n~~d-~  328 (630)
                      ..+.++.++||.||+.|+.    +++++|++.++.... .|..|+||||+|+..|+.+.   +++|++.++++ |.+| .
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~-~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~   92 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHR-YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELG   92 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhc-cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCC
Confidence            3455666777777777776    445555666655543 36677777777777766543   66777777655 6666 4


Q ss_pred             CCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Q 006802          329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK  396 (630)
Q Consensus       329 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~  396 (630)
                      .|+||||+|+..|+.+++++|++..|++++.+|..|.||||+|+..++.+++++|+++|++.......
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence            78888888888888888888874367788888888888888888888888888888888777655443

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=2.4e-19  Score=168.30  Aligned_cols=132  Identities=24%  Similarity=0.434  Sum_probs=107.6

Q ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHhC------CCCCCcccCCCCCchhhhhccCCC----HHHHHHhhcCCCCccccc
Q 006802          257 IARNNGKTVLHSAARMGHLEVVKALVSK------DPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLE  326 (630)
Q Consensus       257 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~------~~~~~~~~d~~g~t~Lh~Aa~~g~----~~iv~~Ll~~~~~~~n~~  326 (630)
                      ..+..|.||||+|+..|+.++++.|+..      ++++.. +|..|+||||+|+..|+    .+++++|++.++++ +.+
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~-~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNA-TDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhc-cCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCC
Confidence            3566788888888888888888877542      244433 47888888888888887    47888888888776 777


Q ss_pred             CC-CCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          327 DN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       327 d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      |. +|+||||+|+..++.+++++|+...|++++..|..|.||||+|...++.+++++|+++++..
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            74 89999999999999999999997568999999999999999999999999999999887654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=1.5e-19  Score=185.90  Aligned_cols=222  Identities=24%  Similarity=0.349  Sum_probs=163.6

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCH
Q 006802          162 PLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI  241 (630)
Q Consensus       162 pLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~  241 (630)
                      .+.-|+..|..+-|+.|+..+  ...+..+.+|.|+||-|+.-.+.+||++|++++++ ++..|.+|+||||.|+..||.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN-VNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCC-ccccccccCCcchhhcccccH
Confidence            355677788888888888764  44466777888888888888888888888888877 456777888888888888888


Q ss_pred             HHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC----HHHHHHhhc
Q 006802          242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIR  317 (630)
Q Consensus       242 e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~----~~iv~~Ll~  317 (630)
                      .++++|+.+|+++ ...+.+|..|+..+...-..+++..-...          .|.+ +. |++...    ..-+...+.
T Consensus       120 ~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r----------~gi~-ie-a~R~~~e~~ml~D~~q~l~  186 (527)
T KOG0505|consen  120 NIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMAR----------QGID-IE-AARKAEEQTMLDDARQWLN  186 (527)
T ss_pred             HHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHH----------hccc-HH-HHhhhhHHHHHHHHHHHHh
Confidence            8888888888776 44567777777776555444444433322          1112 11 111111    112333344


Q ss_pred             CCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Q 006802          318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKP  397 (630)
Q Consensus       318 ~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~  397 (630)
                      .+... +..+..|-|+||.|+.+|..++.++|++ .|.+++.+|.+|+||||.|+..|+.+++++|.++|++.......+
T Consensus       187 ~G~~~-d~~~~rG~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g  264 (527)
T KOG0505|consen  187 AGAEL-DARHARGATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMG  264 (527)
T ss_pred             ccccc-cccccccchHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcC
Confidence            45443 7777779999999999999999999999 899999999999999999999999999999999999998877666


Q ss_pred             CchH
Q 006802          398 PSAT  401 (630)
Q Consensus       398 ~~~~  401 (630)
                      .++.
T Consensus       265 ~~p~  268 (527)
T KOG0505|consen  265 ETPL  268 (527)
T ss_pred             CCCc
Confidence            6554

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.80  E-value=8.1e-18  Score=181.25  Aligned_cols=212  Identities=24%  Similarity=0.308  Sum_probs=151.4

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCC-------ccccccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccc----CCC
Q 006802          161 TPLYVAAESGHALIVEEMLQHMN-------LETASIPARNGYDSFHVAAKQ---GHLEVLKELLGEFPNLVMT----TDL  226 (630)
Q Consensus       161 TpLh~Aa~~g~~eiv~~LL~~~~-------~~~~~~~~~~g~t~Lh~A~~~---g~~eiv~~Ll~~~~~~~~~----~d~  226 (630)
                      .++..|...+.++..+.|+....       .-..+.+...|.|+||.|..+   ++.++++.|++..|.+++.    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            67777888888887777776532       123344455678888887763   4557788888777766542    234


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc-cCCCCCchhhhhcc
Q 006802          227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR-TDKKGQTALHMAVK  305 (630)
Q Consensus       227 ~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-~d~~g~t~Lh~Aa~  305 (630)
                      .|.||||.|+.+.+.++|++|++.|+|+....-..-..|    -   ...-.+      ...++. .-..|+.||-.||.
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~----~---dqk~~r------k~T~Y~G~~YfGEyPLSfAAC  249 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCP----D---DQKASR------KSTNYTGYFYFGEYPLSFAAC  249 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCc----c---cccccc------cccCCcceeeeccCchHHHHH
Confidence            677888888888888888888888877632110000000    0   000000      000000 01358899999999


Q ss_pred             CCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCC--cccccCCCCCHHHHHHHcCCHHHHHHH
Q 006802          306 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID--VNSLNKAGESPLDVAEKLGNTELFSLL  383 (630)
Q Consensus       306 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~--in~~n~~G~TpL~~A~~~~~~~iv~~L  383 (630)
                      .++.+++++|+++++++ +.+|.+|||.||.-+.+-..++..++++ .|++  ...+|+.|.|||.+|++.|..++.+.+
T Consensus       250 ~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  250 TNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             cCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHHHhhhHHHHHHH
Confidence            99999999999988887 9999999999999999999999999999 8888  888999999999999999999999998


Q ss_pred             HHcC
Q 006802          384 KEAG  387 (630)
Q Consensus       384 ~~~g  387 (630)
                      ++..
T Consensus       328 le~~  331 (782)
T KOG3676|consen  328 LERR  331 (782)
T ss_pred             HHhh
Confidence            8873

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=3e-19  Score=165.16  Aligned_cols=133  Identities=22%  Similarity=0.335  Sum_probs=106.8

Q ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHhCCC--C----CCcccCCCCCchhhhhccCCCHH---HHHHhhcCCCCccccc
Q 006802          256 KIARNNGKTVLHSAARMGHLEVVKALVSKDP--S----TGFRTDKKGQTALHMAVKGQNED---IVLELIRPDPSVLKLE  326 (630)
Q Consensus       256 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~--~----~~~~~d~~g~t~Lh~Aa~~g~~~---iv~~Ll~~~~~~~n~~  326 (630)
                      +..|.+|.||||+|++.|+.  ++++...+.  +    ....+|..|+||||+|+..++.+   +++.|++.+.++ +.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-ccc
Confidence            44566788888888888773  222221111  1    11234889999999999999874   688899998876 778


Q ss_pred             C-CCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Q 006802          327 D-NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  391 (630)
Q Consensus       327 d-~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~  391 (630)
                      | .+|+||||+|+..|+.+++++|+...|++++.+|..|.||||+|+..++.+++++|+++|++..
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7 5899999999999999999999975699999999999999999999999999999999998753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=5.9e-19  Score=164.91  Aligned_cols=138  Identities=21%  Similarity=0.245  Sum_probs=116.2

Q ss_pred             CCCCCChHHHHHHHcCCH----HHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHH---HHHHHHhCCCCCCcccC-CC
Q 006802          224 TDLSCSTALHTAAAQGHI----DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE---VVKALVSKDPSTGFRTD-KK  295 (630)
Q Consensus       224 ~d~~g~tpL~~Aa~~g~~----e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~---iv~~Ll~~~~~~~~~~d-~~  295 (630)
                      .+.++.++||.|+..|+.    +++++|++.+..+ +..|.+|+||||+|+..|+.+   ++++|++.+++++.. + ..
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~-d~~~   93 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR-ELGT   93 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC-CCCC
Confidence            456677888989988887    5566677777765 667888999999999988755   478999999888765 5 58


Q ss_pred             CCchhhhhccCCCHHHHHHhhc-CCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCC
Q 006802          296 GQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE  365 (630)
Q Consensus       296 g~t~Lh~Aa~~g~~~iv~~Ll~-~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~  365 (630)
                      |.||||+|+..++.+++++|+. .+.++ +.+|..|.||||+|+..++.+++++|++ +|++++.++..|.
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence            9999999999999999999995 56554 8889999999999999999999999999 8999999988775

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=2.3e-18  Score=161.61  Aligned_cols=134  Identities=16%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCC----HHHHHHHHhcCCccccccC
Q 006802          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH----ALIVEEMLQHMNLETASIP  190 (630)
Q Consensus       115 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~----~eiv~~LL~~~~~~~~~~~  190 (630)
                      .++..|.||||+|++.|+.++++.|+........+..++.+|..|.||||+|+..|+    .+++++|++.  +.+++..
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL--GADINAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc--CCCCCCC
Confidence            455667777777777777777776654321001123356666677777777777776    3566666665  3344444


Q ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 006802          191 AR-NGYDSFHVAAKQGHLEVLKELLGE-FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID  251 (630)
Q Consensus       191 ~~-~g~t~Lh~A~~~g~~eiv~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~  251 (630)
                      +. .|.||||+|+..++.+++++|++. +.+ .+..|..|.||||+|+..|+.+++++|++.+
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            43 566666666666666666666653 433 3455666666666666666666666666554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=3.4e-18  Score=172.29  Aligned_cols=153  Identities=12%  Similarity=0.132  Sum_probs=108.5

Q ss_pred             CCCCC-hHHHHHHHcCCHHHHHHHHhcCCchhhhh----ccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCch
Q 006802          225 DLSCS-TALHTAAAQGHIDVVNFLLEIDSNLAKIA----RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA  299 (630)
Q Consensus       225 d~~g~-tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~----d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  299 (630)
                      |..|. ++||.|+..|+.+++++|+++|+++ +..    +..|.||||+|+..|+.+++++|++.|++++...+..|.||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            44444 4555566667777777777777776 333    34678888888888888888888888877775434567888


Q ss_pred             hhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHH
Q 006802          300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL  379 (630)
Q Consensus       300 Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~i  379 (630)
                      ||.|+..++.++++.|++.|+++ +.+|..|.||||+|+..++.+++..+..   .   ..+..+.+|++++   ++.++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICD---N---EISNFYKHPKKIL---INFDI  177 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcC---C---cccccccChhhhh---ccHHH
Confidence            88888888888888888777765 7778888888888888777777655542   1   2456667777764   36778


Q ss_pred             HHHHHHcCC
Q 006802          380 FSLLKEAGA  388 (630)
Q Consensus       380 v~~L~~~ga  388 (630)
                      +++|+.+++
T Consensus       178 ~~~Lish~v  186 (300)
T PHA02884        178 LKILVSHFI  186 (300)
T ss_pred             HHHHHHHHH
Confidence            888888776

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=3.5e-18  Score=157.96  Aligned_cols=140  Identities=15%  Similarity=0.153  Sum_probs=102.5

Q ss_pred             ccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcC-hhhhhHHhhcCCCCCCcHHHHHHHhCCHH---HHHHHHhcCCcc
Q 006802          110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCD-ANEAKDLLSKKNQEGETPLYVAAESGHAL---IVEEMLQHMNLE  185 (630)
Q Consensus       110 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~-~~~~~~~l~~~n~~g~TpLh~Aa~~g~~e---iv~~LL~~~~~~  185 (630)
                      ....+.+|..|.||||+||+.|+..  ..++.... .+....++...|..|.||||+|+..|+.+   ++++|++.  +.
T Consensus         7 ~~~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~--ga   82 (154)
T PHA02736          7 IIFASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW--GA   82 (154)
T ss_pred             hhHHHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc--CC
Confidence            3445567888999999999999842  22222111 11113446677889999999999998864   57788887  45


Q ss_pred             ccccCC-CCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCch
Q 006802          186 TASIPA-RNGYDSFHVAAKQGHLEVLKELLGE-FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL  254 (630)
Q Consensus       186 ~~~~~~-~~g~t~Lh~A~~~g~~eiv~~Ll~~-~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~  254 (630)
                      +++..+ ..|.||||+|+..|+.+++++|+.. +.+ .+..|..|.||||+|+..|+.+++++|+++|++.
T Consensus        83 din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         83 DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            666666 4788888888888888888888874 544 5567788888888888888888888888887653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=5e-18  Score=149.69  Aligned_cols=144  Identities=26%  Similarity=0.289  Sum_probs=124.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCH
Q 006802          230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  309 (630)
Q Consensus       230 tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~  309 (630)
                      -.+.+|+..+....|+.||+..++..+.+|.+|.||||.|+.+||.+||+.|+..+++.... ...|+||||.||+-++.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~-T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK-TNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccc-cccCccchhhhhcccch
Confidence            35678888889999999999888888889999999999999999999999999998888765 77899999999999999


Q ss_pred             HHHHHhhcCCCCcccccCCCCChHHHHHHHhCcH-HHHHHHhcccCCCcccccCCCCCHHHHHHHcC
Q 006802          310 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT-QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  375 (630)
Q Consensus       310 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~-~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~  375 (630)
                      +++..||.+++++ |...+...||||+||...+. ..+.+|+...++++..+++.+.||+++|.+.+
T Consensus       144 ~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  144 EVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            9999999999887 88788888999999877654 55677777688888999999999999998765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.72  E-value=7.3e-17  Score=162.66  Aligned_cols=144  Identities=15%  Similarity=0.117  Sum_probs=73.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccc---CCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC
Q 006802          198 FHVAAKQGHLEVLKELLGEFPNLVMT---TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH  274 (630)
Q Consensus       198 Lh~A~~~g~~eiv~~Ll~~~~~~~~~---~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~  274 (630)
                      ||.|+..|+.+++++|+++|+++...   .+..|.||||+|+..|+.+++++|+++|+++....+..|.||||.|+..|+
T Consensus        37 L~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~  116 (300)
T PHA02884         37 LYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGC  116 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCC
Confidence            34444444555555555555442211   123455555555555555555555555555421123345555555555555


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       275 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      .+++++|++.++++... |..|.||||+|++.++.+++..+..      +..+..+.+|++++   ++.+++++|++
T Consensus       117 ~eivklLL~~GAdin~k-d~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~n~ei~~~Lis  183 (300)
T PHA02884        117 LKCLEILLSYGADINIQ-TNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---INFDILKILVS  183 (300)
T ss_pred             HHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---ccHHHHHHHHH
Confidence            55555555555555543 5555555555555555554433331      11244555666654   35666666666

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=1.4e-16  Score=140.62  Aligned_cols=143  Identities=31%  Similarity=0.335  Sum_probs=117.8

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHH
Q 006802          198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV  277 (630)
Q Consensus       198 Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~i  277 (630)
                      +-+|+..+....|+.||+..++.++.+|.+|.||||-|+.+||.++|+.|+..|++. +.+...|+||||.||.-.+.++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchhH
Confidence            567888888888889998888888999999999999999999999999999988887 6677889999999999999999


Q ss_pred             HHHHHhCCCCCCcccCCCCCchhhhhccCCCHH-HHHHhhcCCCCcccccCCCCChHHHHHHHhCc
Q 006802          278 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNED-IVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  342 (630)
Q Consensus       278 v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~-iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~  342 (630)
                      +..||.+|++++.. .....||||+|+.+.+.. .+.+|+.........++..+.||+.+|-+.+-
T Consensus       146 a~~LLqhgaDVnA~-t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQ-TKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             HHHHHhccCccccc-ccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            99999999998876 667789999998777654 45666655444446677888999999977753

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.70  E-value=1e-17  Score=158.93  Aligned_cols=145  Identities=30%  Similarity=0.427  Sum_probs=117.4

Q ss_pred             HHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcc
Q 006802          244 VNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL  323 (630)
Q Consensus       244 v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~  323 (630)
                      |++-|+......+.-|..|.+|||+||+.||..+++.|+.+|+..+.. +....||||+|+.+|+-++|..|++..+++ 
T Consensus        16 vrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~t-nmgddtplhlaaahghrdivqkll~~kadv-   93 (448)
T KOG0195|consen   16 VRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQKLLSRKADV-   93 (448)
T ss_pred             EEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHHHHHHHHhccc-
Confidence            333333333334667888999999999999999999999998888765 777789999999999999999999887776 


Q ss_pred             cccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Q 006802          324 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  391 (630)
Q Consensus       324 n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~  391 (630)
                      |..+..|+||||+||..|...+.+-|+. .|+.++..|++|.|||+.|.-.-...+.++-.++|-.++
T Consensus        94 navnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   94 NAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             chhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            8899999999999999999999999998 899999999999999998865544445555556665554

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.62  E-value=2.2e-15  Score=162.58  Aligned_cols=230  Identities=20%  Similarity=0.215  Sum_probs=164.0

Q ss_pred             ccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChh---hhhHHhhcCCCCCCcHHHHHHH---hCCHHHHHHHHhcCC
Q 006802          110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN---EAKDLLSKKNQEGETPLYVAAE---SGHALIVEEMLQHMN  183 (630)
Q Consensus       110 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~~l~~~n~~g~TpLh~Aa~---~g~~eiv~~LL~~~~  183 (630)
                      +..++........++..|...|..+....++..+...   .....++++...|+|.||.|.-   .++-++++.|++...
T Consensus        91 ~~~p~~l~~~d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p  170 (782)
T KOG3676|consen   91 KSGPNILKRFDRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFP  170 (782)
T ss_pred             ccCcchhhhcchhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhH
Confidence            3445545555558899999999999999998876422   1123366777889999999987   456799999999743


Q ss_pred             cccc---ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhcc
Q 006802          184 LETA---SIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN  260 (630)
Q Consensus       184 ~~~~---~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~  260 (630)
                      .-..   ......|.||||.|+.+.+.++|++|++.++++....  .|  .+..+-.++.   .+    ...+. .-.=.
T Consensus       171 ~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa--~G--~FF~~~dqk~---~r----k~T~Y-~G~~Y  238 (782)
T KOG3676|consen  171 KLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA--CG--AFFCPDDQKA---SR----KSTNY-TGYFY  238 (782)
T ss_pred             HHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh--hc--cccCcccccc---cc----cccCC-cceee
Confidence            2111   1133469999999999999999999999999953211  00  0000000000   00    00000 00012


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCC-cccccCCCCChHHHHHHH
Q 006802          261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS-VLKLEDNKGNTALHIAIK  339 (630)
Q Consensus       261 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~-~~n~~d~~G~TpLh~A~~  339 (630)
                      -|..||..||..++.|++++|+++++|++.+ |..|+|.||..+..-..++..++++.++. ....+|++|-|||-+|++
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~~gAd~~aq-DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak  317 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLAHGADPNAQ-DSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK  317 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHhcCCCCCcc-ccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH
Confidence            4788899998888899999999888888876 88899999988888888888888888776 236788899999999999


Q ss_pred             hCcHHHHHHHhcc
Q 006802          340 KGRTQIVRCLLSI  352 (630)
Q Consensus       340 ~g~~~iv~~Ll~~  352 (630)
                      .|+.++++.+++.
T Consensus       318 lGk~emf~~ile~  330 (782)
T KOG3676|consen  318 LGKKEMFQHILER  330 (782)
T ss_pred             hhhHHHHHHHHHh
Confidence            9999999999884

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.61  E-value=4.8e-16  Score=147.61  Aligned_cols=138  Identities=28%  Similarity=0.305  Sum_probs=116.9

Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHH
Q 006802          270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  349 (630)
Q Consensus       270 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~L  349 (630)
                      |+.|+.-.|+.-++........-|..|.+|||+|++.|+..+++.|+..|+.+ |..+....||||+|+.+|+.++|..|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHH
Confidence            34444333444444333333344889999999999999999999999999887 88888889999999999999999999


Q ss_pred             hcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHHh
Q 006802          350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVS  409 (630)
Q Consensus       350 l~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l~~~~~  409 (630)
                      ++ ..+|+|+.|..|+||||+|+..|...+.+-|+..||..+..+..+.+|.+..+....
T Consensus        87 l~-~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~  145 (448)
T KOG0195|consen   87 LS-RKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLK  145 (448)
T ss_pred             HH-HhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHH
Confidence            99 899999999999999999999999999999999999999999999988876654443

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.60  E-value=3e-15  Score=124.53  Aligned_cols=89  Identities=43%  Similarity=0.614  Sum_probs=54.3

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHH
Q 006802          266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI  345 (630)
Q Consensus       266 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~i  345 (630)
                      ||+|++.|+.+++++|++.+++...     |.||||+|+.+|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHH
Confidence            5666666666666666665544432     556666666666666666666666554 5666666666666666666666


Q ss_pred             HHHHhcccCCCccccc
Q 006802          346 VRCLLSIEGIDVNSLN  361 (630)
Q Consensus       346 v~~Ll~~~g~~in~~n  361 (630)
                      +++|++ .|++++.+|
T Consensus        75 ~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HHHHHH-TTT-TTSS-
T ss_pred             HHHHHH-cCCCCCCcC
Confidence            666666 566666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.60  E-value=1.1e-14  Score=128.52  Aligned_cols=122  Identities=41%  Similarity=0.639  Sum_probs=80.9

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHH
Q 006802          259 RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI  338 (630)
Q Consensus       259 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~  338 (630)
                      +.+|.||||.|+..|+.+++++|++.+++... .+..|.||||.|+..++.++++.|++.+... +..+..|.||+|.|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence            34566666666666666666666666655433 3566666666666666666666666665433 555666777777777


Q ss_pred             HhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 006802          339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  383 (630)
Q Consensus       339 ~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L  383 (630)
                      ..++.+++++|++ .+.+++..|..|.||+++|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            7777777777776 5666677777777777777777777776665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.57  E-value=2.8e-14  Score=125.77  Aligned_cols=123  Identities=42%  Similarity=0.660  Sum_probs=74.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       225 d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                      |..|.||||+|+..|+.+++++|++.+.+. ...+..|.+|+|.|+..++.+++++|++.++..... +..|.||+|.|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHH
Confidence            345556666666666666666666655543 344555666666666666666666666665544332 555666666666


Q ss_pred             cCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHh
Q 006802          305 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  350 (630)
Q Consensus       305 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll  350 (630)
                      +.++.+++++|+..+... +..|..|.||+|+|...++.+++++|+
T Consensus        82 ~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            666666666666655433 556666777777777777777776653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.56  E-value=1.2e-14  Score=120.92  Aligned_cols=88  Identities=40%  Similarity=0.584  Sum_probs=80.0

Q ss_pred             hhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHH
Q 006802          300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL  379 (630)
Q Consensus       300 Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~i  379 (630)
                      ||+|++.|+.+++++|++.+.++ +.    |+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEIVKLLLE-NGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHHHHHHHH-TTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHHHHHHHH-hcccccccCCCCCCHHHHHHHcCCHHH
Confidence            79999999999999999987655 33    9999999999999999999999 899999999999999999999999999


Q ss_pred             HHHHHHcCCCCccc
Q 006802          380 FSLLKEAGAAHSKD  393 (630)
Q Consensus       380 v~~L~~~ga~~~~~  393 (630)
                      +++|+++|++++..
T Consensus        75 ~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   75 VKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHHHTTT-TTSS
T ss_pred             HHHHHHcCCCCCCc
Confidence            99999999987643

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=6.7e-13  Score=129.94  Aligned_cols=126  Identities=33%  Similarity=0.459  Sum_probs=71.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC-----HHHHHHHHhCCC--CCCcccCCCC
Q 006802          224 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH-----LEVVKALVSKDP--STGFRTDKKG  296 (630)
Q Consensus       224 ~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~-----~~iv~~Ll~~~~--~~~~~~d~~g  296 (630)
                      .+..+.++++.++..+..+++++++..+.++ +..+.+|.||||+|+..|+     .++++.|++.++  +.....|..|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            3445556666666666666666666666665 5566666666666666666     566666665555  3333345555


Q ss_pred             CchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          297 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       297 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      .||||+|+..|+.++++.|++.+++. +..+..|.|+++.|+..++.++++.++.
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHh
Confidence            55555555555555555555554443 4445555555555555555555555554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.47  E-value=8.8e-13  Score=129.11  Aligned_cols=130  Identities=37%  Similarity=0.494  Sum_probs=122.3

Q ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC-----HHHHHHhhcCCC--CcccccCC
Q 006802          256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN-----EDIVLELIRPDP--SVLKLEDN  328 (630)
Q Consensus       256 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~-----~~iv~~Ll~~~~--~~~n~~d~  328 (630)
                      ...+..+.+++|.++..+..+++++++..+.+.. ..+..|.||||+|+..++     .++++.|++.++  +..+.+|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcc-cccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            3456678999999999999999999999999994 559999999999999999     999999999999  67788899


Q ss_pred             CCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       329 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      .|+||||+|+..|+.+++++|++ .|++++..|..|.|+++.|+..++.++++.+.+.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999 89999999999999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.31  E-value=7.5e-12  Score=99.26  Aligned_cols=96  Identities=26%  Similarity=0.293  Sum_probs=56.7

Q ss_pred             hhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHH
Q 006802          300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL  379 (630)
Q Consensus       300 Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~i  379 (630)
                      +.+++++|..+-|+.....+-++ |.. ..|+||||+|+..|+.+++++|+. .|++++.+|+.|-|||--|+..|+.++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nV-n~~-~ggR~plhyAAD~GQl~ilefli~-iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNV-NEI-YGGRTPLHYAADYGQLSILEFLIS-IGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccH-HHH-hCCcccchHhhhcchHHHHHHHHH-hccccCCccccCCcHHHHHHHHhhHHH
Confidence            34555666666666555555333 221 256666666666666666666666 566666666666666666666666666


Q ss_pred             HHHHHHcCCCCcccCCCCC
Q 006802          380 FSLLKEAGAAHSKDHGKPP  398 (630)
Q Consensus       380 v~~L~~~ga~~~~~~~~~~  398 (630)
                      |++|++.||+.....+.+.
T Consensus        83 VklLL~~GAdrt~~~PdG~  101 (117)
T KOG4214|consen   83 VKLLLQNGADRTIHAPDGT  101 (117)
T ss_pred             HHHHHHcCcccceeCCCch
Confidence            6666666666555444443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.31  E-value=5.5e-12  Score=100.00  Aligned_cols=105  Identities=24%  Similarity=0.269  Sum_probs=94.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcH
Q 006802          264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  343 (630)
Q Consensus       264 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~  343 (630)
                      --+.+++++|.++-|+..+..+.+.+..  ..|++|||+|+..|+.+++++|+..++++ +.+|+.|-|||.-|+..|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhH
Confidence            4567899999999999999998666543  48999999999999999999999999987 89999999999999999999


Q ss_pred             HHHHHHhcccCCCcccccCCCCCHHHHHH
Q 006802          344 QIVRCLLSIEGIDVNSLNKAGESPLDVAE  372 (630)
Q Consensus       344 ~iv~~Ll~~~g~~in~~n~~G~TpL~~A~  372 (630)
                      ++|++|++ .|++-.....+|.+.++.+.
T Consensus        81 ~cVklLL~-~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   81 DCVKLLLQ-NGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHHH-cCcccceeCCCchhHHhhcc
Confidence            99999999 89999988899988877654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.30  E-value=2.4e-12  Score=96.51  Aligned_cols=56  Identities=39%  Similarity=0.661  Sum_probs=33.4

Q ss_pred             hhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHH
Q 006802          315 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  371 (630)
Q Consensus       315 Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A  371 (630)
                      |++.++..++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            5666756679999999999999999999999999996 9999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.20  E-value=3.2e-11  Score=89.82  Aligned_cols=54  Identities=39%  Similarity=0.668  Sum_probs=37.3

Q ss_pred             CChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 006802          330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  384 (630)
Q Consensus       330 G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~  384 (630)
                      |+||||.|++.|+.+++++|++ .|+++|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~-~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE-HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH-TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            6778888888888888888877 57777777777888888888888877777764

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.20  E-value=8.7e-11  Score=112.22  Aligned_cols=122  Identities=23%  Similarity=0.285  Sum_probs=89.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcC
Q 006802          160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG  239 (630)
Q Consensus       160 ~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  239 (630)
                      ..||.-++..|+.+-...||..  ....+..|..|.++|..|+..|+.++++.|++.+++++...+..+.||||+|+..|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            4567777777777777777764  34456677777777777777777777777777777777777777778888888888


Q ss_pred             CHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhC
Q 006802          240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK  284 (630)
Q Consensus       240 ~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~  284 (630)
                      +.++.++|++.|+.. ...+.-|+|+-..|+.-|+.++|..+-++
T Consensus        91 n~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            888888888877775 56677778888888888877777766443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=3.8e-11  Score=123.06  Aligned_cols=116  Identities=26%  Similarity=0.331  Sum_probs=65.5

Q ss_pred             HHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHH
Q 006802          233 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV  312 (630)
Q Consensus       233 ~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv  312 (630)
                      .-|+..|.+|+|+-.+..-.|. ...+..|.|+||.|+..||++||++|++.+++.+.. |.+|+||||+|+..++..++
T Consensus       555 LDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~-DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAA-DSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCc-cCCCCchhhhhhhcCchHHH
Confidence            3455566666666555543333 444555666666666666666666666666666554 66666666666666666666


Q ss_pred             HHhhcCCCCcccccCCCCChHHHHH--HHhCcHHHHHHHh
Q 006802          313 LELIRPDPSVLKLEDNKGNTALHIA--IKKGRTQIVRCLL  350 (630)
Q Consensus       313 ~~Ll~~~~~~~n~~d~~G~TpLh~A--~~~g~~~iv~~Ll  350 (630)
                      +.|++.|+.++-.+-.++.||..-+  .+.|..++.++|.
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            6666666655555555555555433  2334555555554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.18  E-value=5.9e-11  Score=88.39  Aligned_cols=54  Identities=39%  Similarity=0.571  Sum_probs=40.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHH
Q 006802          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML  179 (630)
Q Consensus       120 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL  179 (630)
                      |.||||.||+.|+.+++++|++.+.+      ++.+|.+|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67889999999999999999888653      6777888899999999999998888886

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=8e-11  Score=120.74  Aligned_cols=119  Identities=24%  Similarity=0.265  Sum_probs=79.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHH
Q 006802          123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA  202 (630)
Q Consensus       123 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~  202 (630)
                      .|.-|+..|.+|+|+.++.+..+      ....|..|-|+||-|+..||.+||++||+.  +.+++..|.+|+||||+|+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~D------pSqpNdEGITaLHNAiCaghyeIVkFLi~~--ganVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTD------PSQPNDEGITALHNAICAGHYEIVKFLIEF--GANVNAADSDGWTPLHCAA  624 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcC------CCCCCccchhHHhhhhhcchhHHHHHHHhc--CCcccCccCCCCchhhhhh
Confidence            35556777777777777766433      456677777777777777777777777776  5666777777777777777


Q ss_pred             HcCCHHHHHHHHhcCCCccccCCCCCChHHHHHH--HcCCHHHHHHHHh
Q 006802          203 KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA--AQGHIDVVNFLLE  249 (630)
Q Consensus       203 ~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa--~~g~~e~v~~LL~  249 (630)
                      ..+++.+++.|++.|+.+...+=.++.|+..-+-  ..|..++.++|..
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            7777777777777777655555555556654432  2455556665543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.17  E-value=7.1e-11  Score=133.87  Aligned_cols=105  Identities=26%  Similarity=0.310  Sum_probs=71.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCH
Q 006802          230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  309 (630)
Q Consensus       230 tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~  309 (630)
                      +.|+.|+..|+.+.++.|++.|+++ +..|.+|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~-d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCcH
Confidence            4567777777777777777777765 556677777777777777777777777777776554 66777777777777777


Q ss_pred             HHHHHhhcC-------CCCcccccCCCCChHHHHH
Q 006802          310 DIVLELIRP-------DPSVLKLEDNKGNTALHIA  337 (630)
Q Consensus       310 ~iv~~Ll~~-------~~~~~n~~d~~G~TpLh~A  337 (630)
                      +++++|+++       ++.. +..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCC-CccccCCCCccchh
Confidence            777777766       3332 44555666665433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.12  E-value=1.8e-10  Score=130.68  Aligned_cols=107  Identities=23%  Similarity=0.308  Sum_probs=96.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCc
Q 006802          263 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  342 (630)
Q Consensus       263 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~  342 (630)
                      ...|+.|+..|+.+.++.|++.+++++.. |..|.||||+|+.+|+.+++++|++.++++ +.+|.+|+||||+|+..|+
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence            35689999999999999999999998765 899999999999999999999999998876 8899999999999999999


Q ss_pred             HHHHHHHhccc-------CCCcccccCCCCCHHHHHH
Q 006802          343 TQIVRCLLSIE-------GIDVNSLNKAGESPLDVAE  372 (630)
Q Consensus       343 ~~iv~~Ll~~~-------g~~in~~n~~G~TpL~~A~  372 (630)
                      .+++++|++ +       |++.+..+..|.+|+..+.
T Consensus       161 ~~iv~~Ll~-~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSR-HSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHh-CCCcccccCCCCCccccCCCCccchhh
Confidence            999999998 5       7888888888998876554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.12  E-value=2.2e-10  Score=109.47  Aligned_cols=122  Identities=21%  Similarity=0.222  Sum_probs=103.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCC
Q 006802          228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  307 (630)
Q Consensus       228 g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g  307 (630)
                      -..||.-++..|..+....||..-..+ +..|.+|.++|..|+..|+.++++.|++.++|++...+..+.||||.|+-+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            357899999999999999988864433 7788999999999999999999999999999998888888899999999999


Q ss_pred             CHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          308 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       308 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      +.++.+.|++.|+.. ...|.-|+|+-..|+.-|+.+.|..+-.
T Consensus        91 n~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            999999999888776 6667788899999999998888886643

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.05  E-value=1.8e-10  Score=86.33  Aligned_cols=48  Identities=38%  Similarity=0.455  Sum_probs=16.4

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHH
Q 006802          221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA  269 (630)
Q Consensus       221 ~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~A  269 (630)
                      ++..|..|.||||+|+..|+.+++++|++.|.++ +.+|..|+||||+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            4444444445555554444455554444444443 44444444444443

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.70  E-value=1.1e-08  Score=104.27  Aligned_cols=96  Identities=24%  Similarity=0.365  Sum_probs=89.1

Q ss_pred             CCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHH
Q 006802          293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  372 (630)
Q Consensus       293 d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~  372 (630)
                      +.++...+.+|++.|....++.+.-.+.++ +.+|.+.+|+||.|+..|+.+++++|++..+++++.+|.+|+||||-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            456677899999999999999999888877 8999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCC
Q 006802          373 KLGNTELFSLLKEAGAA  389 (630)
Q Consensus       373 ~~~~~~iv~~L~~~ga~  389 (630)
                      ..++.+++++|.++.-.
T Consensus       582 ~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             hcCcHHHHHHHHHHhcc
Confidence            99999999999887543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.57  E-value=1.4e-07  Score=97.93  Aligned_cols=119  Identities=23%  Similarity=0.336  Sum_probs=100.3

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCC-CcccccCCCCChHHHHHHHhCcHH
Q 006802          266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP-SVLKLEDNKGNTALHIAIKKGRTQ  344 (630)
Q Consensus       266 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~-~~~n~~d~~G~TpLh~A~~~g~~~  344 (630)
                      +..|+..+.+--+......|.+.... +.+..+.||+|++.|+-++|+|++++++ .++++.|..|.|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            44555555544444555566666554 8888999999999999999999999986 467889999999999999999999


Q ss_pred             HHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          345 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       345 iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      +..+|++ .|+.+...|..|.||-.-|.+.+.+++.-+|.+.
T Consensus       949 vc~~lvd-agasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVD-AGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHh-cchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999 8999999999999999999999999999888654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.51  E-value=2.8e-07  Score=95.65  Aligned_cols=118  Identities=27%  Similarity=0.314  Sum_probs=78.9

Q ss_pred             HHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCChHHHHHHHcCCHH
Q 006802          164 YVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPN-LVMTTDLSCSTALHTAAAQGHID  242 (630)
Q Consensus       164 h~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~-~~~~~d~~g~tpL~~Aa~~g~~e  242 (630)
                      .-|+..+++--++..-.+  +..+-+++.+..+.||+|++.|+-|+|+++++++|. +....|+.|.|+||.|+..++..
T Consensus       871 l~av~~~D~~klqE~h~~--gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLN--GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHhccHHHHHHHHhc--CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            334444443333333333  334455666677777777777777777777777763 44555677777888777777777


Q ss_pred             HHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhC
Q 006802          243 VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK  284 (630)
Q Consensus       243 ~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~  284 (630)
                      +.++|++.|+.+ ...|..|.||-..|-..|..++.-+|-.+
T Consensus       949 vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            777777777776 55677778887777777777777777654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.47  E-value=3.6e-07  Score=93.69  Aligned_cols=85  Identities=32%  Similarity=0.418  Sum_probs=60.5

Q ss_pred             hhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHH
Q 006802          300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL  379 (630)
Q Consensus       300 Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~i  379 (630)
                      ||..++.|+.+..-.||..|++..-.--..|+||||.|++.|+.--+++|+- +|+|+++.|.+|.||+++|...|+.++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            6666777777776666666666522233567888888888888777777776 788888888888888888888877776


Q ss_pred             HHHHHH
Q 006802          380 FSLLKE  385 (630)
Q Consensus       380 v~~L~~  385 (630)
                      .+-|.+
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            555443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.46  E-value=1.7e-07  Score=60.03  Aligned_cols=30  Identities=50%  Similarity=0.825  Sum_probs=24.7

Q ss_pred             CCChHHHHHHHhCcHHHHHHHhcccCCCccc
Q 006802          329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNS  359 (630)
Q Consensus       329 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~  359 (630)
                      +|+||||+|+..|+.++|++|++ .|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE-HGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCCC
Confidence            57888888888888888888888 6888763

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.45  E-value=1.1e-07  Score=102.91  Aligned_cols=89  Identities=26%  Similarity=0.313  Sum_probs=49.1

Q ss_pred             cCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCC
Q 006802          250 IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK  329 (630)
Q Consensus       250 ~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~  329 (630)
                      .+.+..++.|..|+|+||+|+..+..+++++|+++|.++.......|+||||-|+.+|+.+++..||.+|..+ ..+|++
T Consensus        40 ~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dke  118 (1267)
T KOG0783|consen   40 SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKE  118 (1267)
T ss_pred             hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEeccc
Confidence            3444445555555555555555555555555555555555443344555555555555555555555555444 555555


Q ss_pred             CChHHHHHHH
Q 006802          330 GNTALHIAIK  339 (630)
Q Consensus       330 G~TpLh~A~~  339 (630)
                      |..||.+-++
T Consensus       119 glsplq~~~r  128 (1267)
T KOG0783|consen  119 GLSPLQFLSR  128 (1267)
T ss_pred             CCCHHHHHhh
Confidence            5555555444

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.42  E-value=2.9e-07  Score=60.62  Aligned_cols=33  Identities=42%  Similarity=0.741  Sum_probs=29.1

Q ss_pred             CCChHHHHHHHhCcHHHHHHHhcccCCCcccccC
Q 006802          329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK  362 (630)
Q Consensus       329 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~  362 (630)
                      +|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            58899999999999999999998 8999988774

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.42  E-value=2.3e-07  Score=100.43  Aligned_cols=94  Identities=30%  Similarity=0.343  Sum_probs=83.0

Q ss_pred             HHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCC-CCChHHHHHHHhCcHHHHHHHhcccCCC
Q 006802          278 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGID  356 (630)
Q Consensus       278 v~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  356 (630)
                      --++-+.|.+.....|..|+|+||+|+..+..+++++|+.+|.++ +.+|. .|+||||-|+..|+.+++-.||. +|+.
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~S  111 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLS-KGRS  111 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHh-cCCc
Confidence            334445566666667999999999999999999999999998887 66664 69999999999999999999999 8999


Q ss_pred             cccccCCCCCHHHHHHH
Q 006802          357 VNSLNKAGESPLDVAEK  373 (630)
Q Consensus       357 in~~n~~G~TpL~~A~~  373 (630)
                      +..+|++|..||+...+
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            99999999999998887

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.33  E-value=1.7e-06  Score=88.84  Aligned_cols=96  Identities=23%  Similarity=0.253  Sum_probs=84.6

Q ss_pred             cccCCCCCCcH------HHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhcc
Q 006802          187 ASIPARNGYDS------FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN  260 (630)
Q Consensus       187 ~~~~~~~g~t~------Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~  260 (630)
                      ...+|.+|.+.      ||..++.|+.+..-.|+..|++.+....+.|.||||.|++.|+.--+++|+-+|+++ ...|.
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~  198 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDS  198 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCC
Confidence            34566666664      899999999999999999999887777889999999999999999999999999998 77899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh
Q 006802          261 NGKTVLHSAARMGHLEVVKALVS  283 (630)
Q Consensus       261 ~g~tpLh~Aa~~g~~~iv~~Ll~  283 (630)
                      +|.||+.+|-..||.++.+.|++
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHH
Confidence            99999999999999888888876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.28  E-value=7.8e-07  Score=90.96  Aligned_cols=91  Identities=22%  Similarity=0.215  Sum_probs=84.5

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHH
Q 006802          260 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  339 (630)
Q Consensus       260 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~  339 (630)
                      .++..++.+|+..|.+..++.+.-.+.+.... |.+.+|+||+|+..|+.+++++|++......+.+|..|+|||.-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETK-DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhccccccc-ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            45677899999999999999999999998875 99999999999999999999999998877779999999999999999


Q ss_pred             hCcHHHHHHHhc
Q 006802          340 KGRTQIVRCLLS  351 (630)
Q Consensus       340 ~g~~~iv~~Ll~  351 (630)
                      .+|.+++++|-+
T Consensus       583 F~h~~v~k~L~~  594 (622)
T KOG0506|consen  583 FKHKEVVKLLEE  594 (622)
T ss_pred             cCcHHHHHHHHH
Confidence            999999999877

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.26  E-value=1.2e-06  Score=91.53  Aligned_cols=90  Identities=24%  Similarity=0.353  Sum_probs=75.1

Q ss_pred             hhhccCCCHHHHHHhhcCCCC---cccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCH
Q 006802          301 HMAVKGQNEDIVLELIRPDPS---VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT  377 (630)
Q Consensus       301 h~Aa~~g~~~iv~~Ll~~~~~---~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~  377 (630)
                      .-|+...++..+..||.++..   .-...+.+|+|+||+||+.|+..+.++|+. +|+|+.++|..|+|||.+|...|..
T Consensus       629 l~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  629 LRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcccH
Confidence            345555666677777777642   223346788999999999999999999997 9999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCc
Q 006802          378 ELFSLLKEAGAAHS  391 (630)
Q Consensus       378 ~iv~~L~~~ga~~~  391 (630)
                      +++++|+.+|....
T Consensus       708 ec~d~llq~gcp~e  721 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999997643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.17  E-value=0.00044  Score=76.71  Aligned_cols=90  Identities=19%  Similarity=0.216  Sum_probs=53.4

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 006802          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (630)
Q Consensus       116 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~  195 (630)
                      ....+.-....|+.+|+.-.|+..++.....  +-.++..|.-|+++|++|+.+.|.|++++|+++..    ..     .
T Consensus        21 ~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~--~lninc~d~lGr~al~iai~nenle~~eLLl~~~~----~~-----g   89 (822)
T KOG3609|consen   21 DLNEGEKGFLLAHENGDVPLVAKALEYKAVS--KLNINCRDPLGRLALHIAIDNENLELQELLLDTSS----EE-----G   89 (822)
T ss_pred             ccchhhHHHHHHHHcCChHHHHHHHHhcccc--ccchhccChHhhhceecccccccHHHHHHHhcCcc----cc-----c
Confidence            3444555556666666666666666665542  23355666666666666666666666666666511    00     2


Q ss_pred             cHHHHHHHcCCHHHHHHHHhc
Q 006802          196 DSFHVAAKQGHLEVLKELLGE  216 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~  216 (630)
                      .+|.+|+..|..++|+.++.+
T Consensus        90 dALL~aI~~~~v~~VE~ll~~  110 (822)
T KOG3609|consen   90 DALLLAIAVGSVPLVELLLVH  110 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHhc
Confidence            466666666666666666654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.17  E-value=4.2e-06  Score=87.33  Aligned_cols=86  Identities=28%  Similarity=0.364  Sum_probs=50.0

Q ss_pred             HHHHHHHcCCHHHHHH-HHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcH
Q 006802          265 VLHSAARMGHLEVVKA-LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  343 (630)
Q Consensus       265 pLh~Aa~~g~~~iv~~-Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~  343 (630)
                      |+|+++.....+-... |...-.......|..|.||||+|+..|+.+.++.|+..++++ ..+|++|++|||-|+..|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCCH
Confidence            4666665555443333 222222223334666666666666666666666666666655 56666666666666666666


Q ss_pred             HHHHHHhc
Q 006802          344 QIVRCLLS  351 (630)
Q Consensus       344 ~iv~~Ll~  351 (630)
                      +++..++.
T Consensus       102 q~i~~vlr  109 (560)
T KOG0522|consen  102 QIITEVLR  109 (560)
T ss_pred             HHHHHHHH
Confidence            66666655

>PF13606 Ank_3: Ankyrin repeat

Probab=98.16  E-value=2.5e-06  Score=54.58  Aligned_cols=27  Identities=41%  Similarity=0.588  Sum_probs=14.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 006802          262 GKTVLHSAARMGHLEVVKALVSKDPST  288 (630)
Q Consensus       262 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~  288 (630)
                      |+||||+||..|+.+++++|++.++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.11  E-value=1.6e-05  Score=87.74  Aligned_cols=100  Identities=25%  Similarity=0.252  Sum_probs=55.4

Q ss_pred             cccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccc--
Q 006802          109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET--  186 (630)
Q Consensus       109 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~--  186 (630)
                      .+.++|..|.-|.++||.|+.+.|.|++++|++....            . ..+|.+|+..|..++|+.++.+.....  
T Consensus        51 ~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~------------~-gdALL~aI~~~~v~~VE~ll~~~~~~~~~  117 (822)
T KOG3609|consen   51 SKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE------------E-GDALLLAIAVGSVPLVELLLVHFVDAPYL  117 (822)
T ss_pred             cccchhccChHhhhceecccccccHHHHHHHhcCccc------------c-chHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            4566666666677777777776667766666655221            1 335666666777777777666532210  


Q ss_pred             ------cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Q 006802          187 ------ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLV  221 (630)
Q Consensus       187 ------~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~  221 (630)
                            ....-.-+.|||.+||..+|.||++.|++++..+.
T Consensus       118 ~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  118 ERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                  00111224455555555555555555555555544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.04  E-value=4.6e-06  Score=93.84  Aligned_cols=126  Identities=21%  Similarity=0.292  Sum_probs=102.6

Q ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHH
Q 006802          258 ARNNGKTVLHSAARMGHLEVVKALVSK-DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI  336 (630)
Q Consensus       258 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~  336 (630)
                      ....|++.+|+++..++..+++.+++. +..... .|.+|...+|+ |..++++...+++......++.+|.+|+||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchh-hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            345689999999999999999999986 443333 48889999999 445667777777777666679999999999999


Q ss_pred             HHHhCcHHHHHHHhcccCCC------cccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          337 AIKKGRTQIVRCLLSIEGID------VNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       337 A~~~g~~~iv~~Ll~~~g~~------in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      |+.+|+..++..|++ .|++      +...+-.|.|+-++|...|+..+..+|.+.
T Consensus       648 Aa~~G~e~l~a~l~~-lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIE-LGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHH-hccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999997 5554      333456799999999999999988888765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.03  E-value=1.7e-05  Score=82.97  Aligned_cols=114  Identities=19%  Similarity=0.258  Sum_probs=86.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHH
Q 006802          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (630)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A  201 (630)
                      -|||.++...+.+-....+....    ...++.+|..|.||||+|+..|+.+.++.|+..  +++...+|..|++|||.|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~----~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a--~Adv~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKV----SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA--GADVSIKNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhh----hceeccccCCCCccHHHHHHhcCHHHHHHHHhc--CCCccccccccccHHHHH
Confidence            46999999988887776665432    456888999999999999999999999999987  567788899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 006802          202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS  252 (630)
Q Consensus       202 ~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~  252 (630)
                      +..|+.+++..++.+.......           -...+...+++.|.+.+.
T Consensus        96 v~~g~~q~i~~vlr~~~~q~~~-----------~~~~~~p~ll~~l~~~~D  135 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHLKYQAWE-----------KWERRLPRLLAKLSEMPD  135 (560)
T ss_pred             HHcCCHHHHHHHHHHhHHHHHH-----------HHHhcchHHHHHHHhCcc
Confidence            9999999998888765432211           123445666666666543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=97.89  E-value=2.1e-05  Score=51.61  Aligned_cols=28  Identities=39%  Similarity=0.590  Sum_probs=14.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 006802          262 GKTVLHSAARMGHLEVVKALVSKDPSTG  289 (630)
Q Consensus       262 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~  289 (630)
                      |.||||+|+..|+.+++++|++.++++.
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            4555555555555555555555554443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.85  E-value=1.4e-05  Score=90.67  Aligned_cols=92  Identities=35%  Similarity=0.456  Sum_probs=83.4

Q ss_pred             CCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHH
Q 006802          293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  372 (630)
Q Consensus       293 d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~  372 (630)
                      -..|.|+||.|+..+...+++.|++.++++ |..|..|+||||.+...|+...+..|++ +|++.++.+.+|++|+++|.
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHh
Confidence            346889999999999999999999999985 9999999999999999999999999999 99999999999999999998


Q ss_pred             HcCCHHHHHHHHHc
Q 006802          373 KLGNTELFSLLKEA  386 (630)
Q Consensus       373 ~~~~~~iv~~L~~~  386 (630)
                      ...+.+++-++.-.
T Consensus       731 ~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  731 EAANADIVLLLRLA  744 (785)
T ss_pred             hhccccHHHHHhhh
Confidence            88777776665544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.84  E-value=4.6e-05  Score=80.08  Aligned_cols=87  Identities=22%  Similarity=0.234  Sum_probs=46.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCc---cccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC
Q 006802          198 FHVAAKQGHLEVLKELLGEFPNL---VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH  274 (630)
Q Consensus       198 Lh~A~~~g~~eiv~~Ll~~~~~~---~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~  274 (630)
                      |-.|+...++..+-.||.++...   ....+.+|+|+||+||..|++.+.++|+-+|.++ ...|..|+|+|.+|-..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            33444444455555555444321   1122344556666666666666666666555554 4455666666666666666


Q ss_pred             HHHHHHHHhCC
Q 006802          275 LEVVKALVSKD  285 (630)
Q Consensus       275 ~~iv~~Ll~~~  285 (630)
                      .+++..|+.+|
T Consensus       707 qec~d~llq~g  717 (749)
T KOG0705|consen  707 QECIDVLLQYG  717 (749)
T ss_pred             HHHHHHHHHcC
Confidence            66666666554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.73  E-value=4.6e-05  Score=76.24  Aligned_cols=75  Identities=25%  Similarity=0.367  Sum_probs=60.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHH
Q 006802          123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA  202 (630)
Q Consensus       123 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~  202 (630)
                      -|..||+.|+.+.|++|++.|-+      +|..|....+||++|+..||.++|++||+++  +.......+|.-+ |+++
T Consensus        39 elceacR~GD~d~v~~LVetgvn------VN~vD~fD~spL~lAsLcGHe~vvklLLenG--AiC~rdtf~G~RC-~Yga  109 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVN------VNAVDRFDSSPLYLASLCGHEDVVKLLLENG--AICSRDTFDGDRC-HYGA  109 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCC------cchhhcccccHHHHHHHcCcHHHHHHHHHcC--CcccccccCcchh-hhhh
Confidence            59999999999999999997654      7888999999999999999999999999984  4434344556554 4555


Q ss_pred             HcCC
Q 006802          203 KQGH  206 (630)
Q Consensus       203 ~~g~  206 (630)
                      .+.+
T Consensus       110 Lnd~  113 (516)
T KOG0511|consen  110 LNDR  113 (516)
T ss_pred             hhHH
Confidence            5543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.68  E-value=4.3e-05  Score=86.25  Aligned_cols=125  Identities=23%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhc-CCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhh
Q 006802          225 DLSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA  303 (630)
Q Consensus       225 d~~g~tpL~~Aa~~g~~e~v~~LL~~-~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  303 (630)
                      ...|.+.||+++..++...++.+++. |... ...|.+|...+|. |..++++..-+|+.........+|..|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            44455555666555555555555554 2222 3344455555555 3334444444444333222223355566666666


Q ss_pred             ccCCCHHHHHHhhcCCCCc-----ccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          304 VKGQNEDIVLELIRPDPSV-----LKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       304 a~~g~~~iv~~Ll~~~~~~-----~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      +..|+..++..|++.++..     ....+..|.|+-.+|-.+|+..+..+|-+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            6666655555555433221     12223346666666666666655555543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.68  E-value=0.00011  Score=67.10  Aligned_cols=67  Identities=27%  Similarity=0.277  Sum_probs=56.5

Q ss_pred             ccccCCCCChHHHHHHHhCcHHHHHHHhcccC-CCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG-IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       323 ~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g-~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      +|.+|..|+|||+.|+..|+.+.+.+|+. .| +.+...|..|.+++.+|.+.|..+++..|.+.--+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            48888889999999998898899998888 66 888888888888999998888888888888874443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.51  E-value=9.4e-05  Score=84.15  Aligned_cols=90  Identities=28%  Similarity=0.404  Sum_probs=71.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhcc
Q 006802          226 LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK  305 (630)
Q Consensus       226 ~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~  305 (630)
                      ..|.|+||.|+..|..-++++|++.|+++ +..|..|++|||.+...|+...+..|++++++.... +.+|.+||++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~-~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAF-DPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcccccccccc-CccCcchhhHHhh
Confidence            45678888888888888888888888885 778888888888888888888888888888887765 8888888888877


Q ss_pred             CCCHHHHHHhhc
Q 006802          306 GQNEDIVLELIR  317 (630)
Q Consensus       306 ~g~~~iv~~Ll~  317 (630)
                      ..+.+++..+..
T Consensus       732 ~~~~d~~~l~~l  743 (785)
T KOG0521|consen  732 AANADIVLLLRL  743 (785)
T ss_pred             hccccHHHHHhh
Confidence            766666554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.37  E-value=0.00035  Score=70.14  Aligned_cols=93  Identities=20%  Similarity=0.146  Sum_probs=66.0

Q ss_pred             CchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCC
Q 006802          297 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN  376 (630)
Q Consensus       297 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~  376 (630)
                      .--|..|++.|..+.|++|++.|..+ |..|...+.||.+|+-.||.++|++|++ +|+-...-..+|...+.-|-   +
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLe-nGAiC~rdtf~G~RC~YgaL---n  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLE-NGAICSRDTFDGDRCHYGAL---N  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHH-cCCcccccccCcchhhhhhh---h
Confidence            33577888888888888888876665 8888888888888888888888888888 77655544456665544333   4


Q ss_pred             HHHHHHHHHcCCCCcccC
Q 006802          377 TELFSLLKEAGAAHSKDH  394 (630)
Q Consensus       377 ~~iv~~L~~~ga~~~~~~  394 (630)
                      ..|-+.|+++..-...+.
T Consensus       112 d~IR~mllsydi~KA~d~  129 (516)
T KOG0511|consen  112 DRIRRMLLSYDILKAFDA  129 (516)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            456667776655444433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.26  E-value=0.00067  Score=62.05  Aligned_cols=64  Identities=22%  Similarity=0.250  Sum_probs=38.5

Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhC
Q 006802          221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK  284 (630)
Q Consensus       221 ~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~  284 (630)
                      ++.+|..|+|||+.|+..|..+.+.+|+.+|...+...|..|.+++.+|-+.|+.++++.|.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            3445566666666666666666666666666444455566666666666666666666666554

>smart00248 ANK ankyrin repeats

Probab=95.69  E-value=0.015  Score=35.37  Aligned_cols=27  Identities=41%  Similarity=0.795  Sum_probs=17.3

Q ss_pred             CChHHHHHHHhCcHHHHHHHhcccCCCc
Q 006802          330 GNTALHIAIKKGRTQIVRCLLSIEGIDV  357 (630)
Q Consensus       330 G~TpLh~A~~~g~~~iv~~Ll~~~g~~i  357 (630)
                      |.||+|+|+..++.++++.|++ .+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~-~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLD-KGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-cCCCC
Confidence            5667777777777777776666 44443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.51  E-value=0.099  Score=49.54  Aligned_cols=123  Identities=19%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHH
Q 006802          231 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED  310 (630)
Q Consensus       231 pL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~  310 (630)
                      .|--|+...+++-+.-++....+        -.+++-+|+.++..+++.+|+.+-.-.          .=.+|-......
T Consensus       156 sledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~f~ft----------~~dv~~~~~~~y  217 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSKFNFT----------KQDVASMEKELY  217 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhhccee----------cchhhhcCcchh
Confidence            46677777777777766653222        356788888888888888888653211          111222222333


Q ss_pred             HHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccc---cCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          311 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL---NKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       311 iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~---n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      -++++|.....                    +..+++++++..-+++|.+   -+.|.|.|+-|.++++.+++.+|+++|
T Consensus       218 dieY~LS~h~a--------------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  218 DIEYLLSEHSA--------------------SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             hHHHHHhhcCC--------------------cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            46666654322                    3567778887555667653   578999999999999999999999999


Q ss_pred             CCCc
Q 006802          388 AAHS  391 (630)
Q Consensus       388 a~~~  391 (630)
                      |-..
T Consensus       278 A~~~  281 (284)
T PF06128_consen  278 AISG  281 (284)
T ss_pred             cccc
Confidence            9543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.23  E-value=0.18  Score=46.53  Aligned_cols=138  Identities=20%  Similarity=0.193  Sum_probs=81.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHH
Q 006802          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVA  201 (630)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A  201 (630)
                      -.|..|+..+-+.++++.-+...         ..-..+++....||+..+.|+|+|+=++..       -.+-.+.+..|
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~---------~~~~~~q~LFElAC~~qkydiV~WI~qnL~-------i~~~~~iFdIA  111 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLE---------NERYLNQELFELACEEQKYDIVKWIGQNLH-------IYNPEDIFDIA  111 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhh---------cchhHHHHHHHHHHHHccccHHHHHhhccC-------CCCchhhhhhh
Confidence            45777788887777776654422         111345677788888888888888854411       11223556777


Q ss_pred             HHcCCHHHHH----HHHhcCCCccccCCC--CCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          202 AKQGHLEVLK----ELLGEFPNLVMTTDL--SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       202 ~~~g~~eiv~----~Ll~~~~~~~~~~d~--~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      ....+.++..    .+++..... ...|.  --..-|..|+..|-+..+...+++|.+..       .++|..|+...|.
T Consensus       112 ~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~Av~ynhR  183 (192)
T PF03158_consen  112 FAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVKYNHR  183 (192)
T ss_pred             hhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHHhhHH
Confidence            7777766522    122221110 00000  00123567778888888877777777651       2677788888887


Q ss_pred             HHHHHHHh
Q 006802          276 EVVKALVS  283 (630)
Q Consensus       276 ~iv~~Ll~  283 (630)
                      .++.+++.
T Consensus       184 kIL~yfi~  191 (192)
T PF03158_consen  184 KILDYFIR  191 (192)
T ss_pred             HHHHHhhc
Confidence            77777764

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.19  E-value=0.14  Score=53.92  Aligned_cols=71  Identities=27%  Similarity=0.348  Sum_probs=54.0

Q ss_pred             HHHHHHhhcCCCCc-----ccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 006802          309 EDIVLELIRPDPSV-----LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  383 (630)
Q Consensus       309 ~~iv~~Ll~~~~~~-----~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L  383 (630)
                      ...+++|.+++.+.     ....|.--.|+||+|+..|..++|.+||+ .|+|+..+|..|.||.+++.   +.++-..+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            45566676665433     12234456799999999999999999999 78999999999999999987   44444433

>smart00248 ANK ankyrin repeats

Probab=94.94  E-value=0.046  Score=33.06  Aligned_cols=24  Identities=58%  Similarity=0.760  Sum_probs=11.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCC
Q 006802          262 GKTVLHSAARMGHLEVVKALVSKD  285 (630)
Q Consensus       262 g~tpLh~Aa~~g~~~iv~~Ll~~~  285 (630)
                      |.||+|+|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            344444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.86  E-value=0.74  Score=42.56  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=44.6

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCC
Q 006802          161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH  240 (630)
Q Consensus       161 TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~  240 (630)
                      -.|..|+..+-+.++++.-+.....     -...++.+-.||+..+.|+|+|+-+.-.-      .+-.+.+..|....+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccc
Confidence            4566778888888877766542111     13455677788888888888888433221      122355667777777


Q ss_pred             HHH
Q 006802          241 IDV  243 (630)
Q Consensus       241 ~e~  243 (630)
                      .++
T Consensus       117 lsL  119 (192)
T PF03158_consen  117 LSL  119 (192)
T ss_pred             hhH
Confidence            665

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=92.81  E-value=0.19  Score=52.95  Aligned_cols=63  Identities=22%  Similarity=0.146  Sum_probs=37.3

Q ss_pred             HHHHHHHHhcCCchhhh-----hccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          241 IDVVNFLLEIDSNLAKI-----ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       241 ~e~v~~LL~~~~~~~~~-----~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                      .+.+++|.+++.+.+..     .+.--.|+||+|+..|..++|.+||+.+.|+... |..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~k-d~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTK-DGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhc-ccCCCCcccccc
Confidence            34455555554443111     1223456777777777777777777777666554 777777777665

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.54  E-value=0.93  Score=43.19  Aligned_cols=48  Identities=13%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 006802          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH  181 (630)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~  181 (630)
                      +-.|--|+..-|++.+..++..-.             .-.++|.+|...+..+++.+|+.+
T Consensus       154 ~isledAV~AsN~~~i~~~VtdKk-------------dA~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  154 DISLEDAVKASNYEEISNLVTDKK-------------DAHQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             cccHHHHHhhcCHHHHHHHhcchH-------------HHHHHHHHHhcccHHHHHHHHHhh
Confidence            345778888888887777765421             125788888888889999999886

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=85.41  E-value=10  Score=39.14  Aligned_cols=224  Identities=10%  Similarity=0.053  Sum_probs=126.1

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccc-cccCCCC
Q 006802          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET-ASIPARN  193 (630)
Q Consensus       115 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~-~~~~~~~  193 (630)
                      ..|..|.-.|..+...++.+....+++.-.+.   ..--..|..|.-.+.-....+..+-...+++...+.. .-..+..
T Consensus        16 ~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~---~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~   92 (322)
T cd07920          16 AKDQHGSRFLQQKLEEATPEEKELIFDEILPH---VVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMY   92 (322)
T ss_pred             cCCchhhHHHHHHhccCCHHHHHHHHHHHHHh---HHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccch
Confidence            35677888899999999988888888763321   1223456788888888888888776666665422111 1235566


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcC-CC-ccccCCCCCChHHHHHHHcCCHHHHHHHHhcC--CchhhhhccCCCcHHHHH
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEF-PN-LVMTTDLSCSTALHTAAAQGHIDVVNFLLEID--SNLAKIARNNGKTVLHSA  269 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~-~~-~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~--~~~~~~~d~~g~tpLh~A  269 (630)
                      |.-.+..+...+..+....+++.- +. ..-..|..|...+..+...+..+..+.+++.=  .-..-..+..|...+...
T Consensus        93 g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~  172 (322)
T cd07920          93 GCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRC  172 (322)
T ss_pred             hHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHH
Confidence            766666666666654444443321 11 11235677777777777766666555555421  111112355666666666


Q ss_pred             HHcCCHH----HHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCC-Cc-ccccCCCCChHHHHHHHhCcH
Q 006802          270 ARMGHLE----VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP-SV-LKLEDNKGNTALHIAIKKGRT  343 (630)
Q Consensus       270 a~~g~~~----iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~-~~-~n~~d~~G~TpLh~A~~~g~~  343 (630)
                      ......+    +++.|.......  ..|..|...+..+.+.+..+....+++.-. .. --..+..|...+..+...+..
T Consensus       173 l~~~~~~~~~~l~~~l~~~~~~L--~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~  250 (322)
T cd07920         173 LEHCSEEQREPLLEEILEHALEL--VQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASK  250 (322)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHH--hcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCH
Confidence            6655433    333333322222  236677777777776665443333332210 11 113467777777777666643

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.00  E-value=1.7  Score=34.41  Aligned_cols=48  Identities=19%  Similarity=0.192  Sum_probs=36.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhc
Q 006802          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH  181 (630)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~  181 (630)
                      ...|..|+..|+.|+++.+++.....             ...|..|+..-+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~~-------------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKPD-------------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccH-------------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34688888888888888888654321             3468888888888888888886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.11  E-value=2.9  Score=33.08  Aligned_cols=47  Identities=19%  Similarity=0.310  Sum_probs=24.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhc
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI  250 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~  250 (630)
                      ..+..|+.+|+.|+++.+++.+..     +   ...+..|+..-+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            345555555565555555543311     1   2345555555555555555554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	630
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-22
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-18
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-17
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-05
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-17
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-16
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-14
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-14
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		4e-13
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-13
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		5e-13
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		8e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-11
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-11
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-11
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		5e-11
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-11
1uoh_A	226	Human Gankyrin Length = 226		5e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-10
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-10
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		6e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		5e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		8e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-08
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		4e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		4e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-08
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		6e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		7e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-07
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		6e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-06
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		9e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		6e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		8e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		3e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		5e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		7e-05
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		7e-05
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		7e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		8e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		2e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		4e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		2e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		2e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		4e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		5e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 21/310 (6%)
Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           E   N +     G   LH+AAR G++  V+ +L+  +A++A   ++KK   G TPL+VAA
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQA--CMTKK---GFTPLHVAA 154
Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTD 225
           + G   + E +L+      A+   +NG    HVA    +L+++K LL  G  P+   +  
Sbjct: 155 KYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH---SPA 209
Query: 226 LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 285
            +  T LH AA Q  ++V   LL+   + A      G T LH AA+ GH E+V  L+SK 
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
            + G   +K G T LH+  +  +  +   LI+    ++      G T LH+A   G  ++
Sbjct: 269 -ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKL 326
Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH---SKDHGKPPSATK 402
           V+ LL  +  DVN+  K G SPL  A + G+T++ +LL + GA+    S D   P +  K
Sbjct: 327 VKFLLQHQA-DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385
Query: 403 QLKQ-TVSDI 411
           +L   +V+D+
Sbjct: 386 RLGYISVTDV 395

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 294
           AA  G+ D V  L+E  +++   + ++G+T LH AA+ GH E+VK L+SK      + D 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
            G+T LH A K  +++IV  LI     V   +D+ G T LH A K+G  +IV+ L+S +G
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLIS-KG 126
Query: 355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            DVN+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 362
           A +  N+D V +LI     V    D+ G T LH A K+G  +IV+ L+S +G DVN+ + 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAKDS 68
Query: 363 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH-GKPP 398
            G +PL  A K G+ E+  LL   GA  ++KD  G+ P
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP 106

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 12/158 (7%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 292
           AA  G+ D V  LLE  +++   + ++GKT LH AA  GH EVVK L+S+  DP+     
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---K 66
Query: 293 DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
           D  G+T LH+A +  ++++V  L+    DP+    +D+ G T LH+A + G  ++V+ LL
Sbjct: 67  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           S +G D N+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 124 S-QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 362
           A +  N+D V +L+     V    D+ G T LH+A + G  ++V+ LLS +G D N+ + 
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDS 68
Query: 363 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKD-HGKPP 398
            G++PL +A + G+ E+  LL   GA  ++KD  GK P
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
           NG+T LH AAR GHLEVVK L+        + DK G+T LH+A +  + ++V  L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
            V   +D  G T LH+A + G  ++V+ LL   G DVN+ +K G +PL +A + G+ E+ 
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 381 SLLKEAGA 388
            LL EAGA
Sbjct: 118 KLLLEAGA 125

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 10/235 (4%)
Query: 155 KNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKEL 213
           ++Q   +PL+ AAE+GH  I   ++Q   N++T S   R        AA+  HLE +K L
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT---PLMEAAENNHLEAVKYL 63
Query: 214 LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 273
           + +   LV   D   ST LH AA +GH +VV +LL           + G T +  A    
Sbjct: 64  I-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 333
           H+++VK L+SK      R D +    LH A      DI  E++      L   +  G++ 
Sbjct: 123 HVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSP 180
Query: 334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           LHIA ++ R   V   LS +  DV   NK GE+PL  A    N++++S L+ + A
Sbjct: 181 LHIAARENRYDCVVLFLSRDS-DVTLKNKEGETPLQCASL--NSQVWSALQMSKA 232

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 294
           AA  G+ D V  L+E  +++   + ++G+T LH AA  GH EVVK L+SK      + D 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
            G+T LH A +  ++++V  LI     V   +D+ G T LH A + G  ++V+ L+S +G
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KG 126
Query: 355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            DVN+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 292
           AA  G+ D V  LLE  ++    + ++G+T LH AA  GH E+VK L+SK  DP+     
Sbjct: 11  AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---K 66
Query: 293 DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
           D  G+T LH A +  +++IV  L+    DP+    +D+ G T LH A + G  +IV+ LL
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           S +G D N+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 124 S-KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           +GY   H+AA  GHLE+++ LL    + V  +DL+  T LH AAA GH+++V  LL+  +
Sbjct: 46  DGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           ++     N+G T LH AA+ GHLE+V+ L+        + DK G+TA  +++   NED+
Sbjct: 105 DV-NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++     N+G T LH AA  GHLE+V+ L+ K+ +    
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNA 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
           +D  G T LH+A    + +IV  L++    V    DN G+T LH+A K G  +IV  LL 
Sbjct: 76  SDLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
             G DVN+ +K G++  D++   GN +L  +L+
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  AAR G  + V+ L++        TD  G T LH+A    + +IV E++  + +
Sbjct: 15  GKKLLE-AARAGQDDEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIV-EVLLKNGA 71
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
            +   D  G T LH+A   G  +IV  LL   G DVN+ +  G +PL +A K G+ E+  
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 382 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
           +L +        HG   +A  +  +T  DI  D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++      +G T LH AAR GHLE+V+ L+        +
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            DK G T LH+A +  + +IV  L++    V   +D  G T LH+A ++G  +IV  LL 
Sbjct: 65  -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 387
             G DVN+ +K G++P D+A   GN ++  +L++A 
Sbjct: 123 -AGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 4/156 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++      +G T LH AAR GHLE+V+ L+        +
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            DK G T LH+A +  + +IV  L++    V   +D  G T LH+A ++G  +IV  LL 
Sbjct: 65  -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 387
             G DVN+ +K G++P D+A + G+ ++  +L++A 
Sbjct: 123 -AGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
           LH A       +V E+L S        LL +K+Q+G  PL+ +       I   +L  M 
Sbjct: 6   LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
           N+     P  +G+  FH+A   G+LEV+K L      P+L   T+    T LH A  +  
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
            +V  FL+E  +++ +I     +  LH AA +G L++++ L     S     DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
             A+   + D  + L+    +   L DNKG  A  +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNL 254
            H A  +     ++ELL   P+L++  D      LH + + Q H ++ +FLL    + NL
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNL 64
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVL 313
                ++G T  H A  +G+LEVVK+L  +       +   +G T LH+AV  +  ++  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVA 371
            LI    SV +++D      LH A   G  +++  L  +    VN  +K G +PL   +A
Sbjct: 125 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 372 EKLGNTELFSLLKEAGAAHS 391
           E  G+  +  L+++ GA + 
Sbjct: 184 EGHGDAAVL-LVEKYGAEYD 202

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
           LH A       +V E+L S        LL +K+Q+G  PL+ +       I   +L  M 
Sbjct: 6   LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
           N+     P  +G+  FH+A   G+LEV+K L      P+L   T+    T LH A  +  
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
            +V  FL+E  +++ +I     +  LH AA +G L++++ L     S     DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
             A+   + D  + L+    +   L DNKG  A  +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNL 254
            H A  +     ++ELL   P+L++  D      LH + + Q H ++ +FLL    + NL
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNL 64
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVL 313
                ++G T  H A  +G+LEVVK+L  +       +   +G T LH+AV  +  ++  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVA 371
            LI    SV +++D      LH A   G  +++  L  +    VN  +K G +PL   +A
Sbjct: 125 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 372 EKLGNTELFSLLKEAGAAHS 391
           E  G+  +  L+++ GA + 
Sbjct: 184 EGHGDAAVL-LVEKYGAEYD 202

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 10/220 (4%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM- 182
           LH A       +V E+L S        LL +K+Q+G  PL+ +       I   +L  M 
Sbjct: 6   LHQACMENEFFKVQELLHS-----KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGH 240
           N+     P  +G+  FH+A   G+LEV+K L      P+L   T+    T LH A  +  
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKW 119
Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
            +V  FL+E  +++ +I     +  LH AA +G L++++ L     S     DK+G T L
Sbjct: 120 FEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 340
             A+   + D  + L+    +   L DNKG  A  +A+ +
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNL 254
            H A  +     ++ELL   P+L++  D      LH + + Q H ++ +FLL    + NL
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNL 64
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVL 313
                ++G T  H A  +G+LEVVK+L  +       +   +G T LH+AV  +  ++  
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVA 371
            LI    SV +++D      LH A   G  +++  L  +    VN  +K G +PL   +A
Sbjct: 125 FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 372 EKLGNTELFSLLKEAGAAHS 391
           E  G+  +  L+++ GA + 
Sbjct: 184 EGHGDAAVL-LVEKYGAEYD 202

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 4/153 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++      +G T LH AAR GHLE+V+ L+        +
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            DK G T LH+A +  + +IV  L++    V   +D  G T LH+A ++G  +IV  LL 
Sbjct: 77  -DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
             G DVN+ +K G++  D++   GN +L  +L+
Sbjct: 135 -AGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +  +D  G T LH+A ++G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 397
           DVN+ +K G +PL +A + G+ E+  +L +AGA   A  KD   P
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 116

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV-LHSAARMGHLEVVKALVSKDPS 287
           S+ LH AA  G  D++  LL+  +N    ARN  + V LH A + GH +VVK L+  +  
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
              + D  G T L  A  G + ++V  L++   S+    +NKGNTALH A+ +    +V 
Sbjct: 145 PN-KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVE 202
Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
            LL + G  V  LNK   + +D AE+  N+++  LL+
Sbjct: 203 -LLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
           L  AA  G  D V  L+   +N A +   +  G T LH AAR+GHLE+V+ L+ K+ +  
Sbjct: 18  LLEAARAGQDDEVRILM---ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
              D  G T LH+A K  + +IV  L++    V   +D  G+T LH+A   G  +IV  L
Sbjct: 74  NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
           L   G DVN+ +K G++  D++   GN +L  +L+
Sbjct: 133 LKY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +  ED  G+T LH+A + G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 393
           DVN+L+ +G +PL +A K G+ E+  +L + GA  + D
Sbjct: 72  DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD 109

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           NG    H+AA+ GHLEV+K LL E    V   D +  T LH AA  GH++VV  LLE  +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALV 282
           ++      NG+T LH AAR GHLEVVK L+
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
           NG+T LH AAR GHLEVVK L+        + DK G+T LH+A +  + ++V  L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
            V   +D  G T LH+A + G  ++V+ LL
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+T LH+A +  + ++V  L+     V   +D  G T LH+A + G  ++V+ LL   G 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           DVN+ +K G +PL +A + G+ E+  LL EAGA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++   A N G T LH AA  GHLE+V+ L+         
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
           +D  G T LH+A    + +IV  L++    V  + D+ G T LH+A K G  +IV  LL 
Sbjct: 76  SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM-DSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
             G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
           L  AAR G  + V+ L++         D  G T LH+A    + +IV  L++    V   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DA 75
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
            D  G T LH+A   G  +IV  LL   G DVN+++  G +PL +A K G  E+  +L +
Sbjct: 76  SDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 386 AGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
                   HG   +A  +  +T  DI  D
Sbjct: 135 --------HGADVNAQDKFGKTAFDISID 155

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 232 LHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
           L  AA  G  D V  L+    D N A +    G T LH AA  GHLE+V+ L+ K+ +  
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVV---GWTPLHLAAYWGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
              D  G T LH+A    + +IV E++  + + +  +D+ G T LH+A  +G  +IV  L
Sbjct: 74  NAYDTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
           L   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 133 LKY-GADVNAQDKFGKTAFDISINNGNEDLAEILQK 167

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  G+++++   ++  + + +   D  G T LH+A   G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGRDDEV--RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 393
           DVN+ +  G +PL +A   G+ E+  +L + GA  ++KD
Sbjct: 72  DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD 110

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 8/153 (5%)
Query: 235 AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 292
           AA  G  D V  L+   +N A + AR+  G T LH AA  GHLE+V+ L+        + 
Sbjct: 21  AARAGQDDEVRILM---ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK- 76
Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
           D  G T LH+A +  + +IV E++  + + +   D+ G T LH+A K+G  +IV  LL  
Sbjct: 77  DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK- 134
Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 288
           ST LH A  QGH+ +V  L++  ++ + I    G + +H AA+ GH  +V  L++K    
Sbjct: 77  STPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 289 GFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
               D+ G T L  A  +  + D    L+  + SV   +    NTALH A+  G T ++ 
Sbjct: 136 DM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 393
            LL   G +V++ N  GES LD+A++  N  + + L+EA  A   D
Sbjct: 195 LLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
           G+   H+AA  GHLE+++ LL    ++     L   T LH AA +GH++VV  LL+   N
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-TPLHLAADRGHLEVVEVLLK---N 102
Query: 254 LAKIARN--NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
            A +  N  NG T LH AA +GHLE+V+ L+        + DK G+TA  +++   NED+
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 161

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 10/157 (6%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
           L  AA  G  D V  L+   +N A +  ++  G T LH AA  GHLE+V+ L+ K+ +  
Sbjct: 18  LLEAARAGQDDEVRILM---ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADV 73
Query: 290 FRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
              D  G T LH+A  +G  E  V+E++  + + +   D+ G T LH+A   G  +IV  
Sbjct: 74  NADDSLGVTPLHLAADRGHLE--VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
           LL   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 132 LLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++     ++GKT LH AA  GHLE+V+ L+         
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            DK G T LH+A    + +IV E++  + + +   D  G T LH+A   G  +IV  LL 
Sbjct: 76  ADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
             G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 Y-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 14/156 (8%)
Query: 127 AARAGNLSRV-MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-MNL 184
           AARAG    V + I    D N         +  G TPL++AA SGH  IVE +L+H  ++
Sbjct: 21  AARAGQDDEVRILIANGADVNAV-------DNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 185 ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
           + A +    G+   H+AA  GHLE+++ LL ++   V   D++ ST LH AA +GH+++V
Sbjct: 74  DAADV---YGFTPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIV 129
Query: 245 NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
             LL+  +++       GKT    +   G+ ++ K+
Sbjct: 130 EVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAKS 164

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++  +  N G T LH AA  GHLE+V+ L+         
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D  G T LH+A    + +IV  L++    V    D  G+T LH+A  +G  +IV  LL 
Sbjct: 76  ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTEL 379
             G DVN+ +K G++  D++   GN +L
Sbjct: 135 Y-GADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++     + G T LH AA +GH E+V+ L+        R
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D  G T LH+A    + +IV  L++    V   +D  G T LH+A  +G  +IV  LL 
Sbjct: 77  -DTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
             G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
           A  G LE LKE +    +L   TD    TALH A + GH ++V FLL++   +     + 
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 73
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
           G + LH AA  G  E+VKAL+ K        ++ G T LH A      +I + L+     
Sbjct: 74  GWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
           PD      +D+   TA+H A  KG  +++  LL  +    N  +  G +PL +A      
Sbjct: 133 PDA-----KDHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERV 186
Query: 378 ELFSLLKEAGAA 389
           E   LL   GA+
Sbjct: 187 EEAKLLVSQGAS 198

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 15/243 (6%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
           G TPL+ A +     IVE +L+H       +  +NG   F +AA  G +++LK  L +  
Sbjct: 59  GWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGA 116
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSA 269
           + V   D    TA   AA  G +  + FL +  +N+          +  R  G T L  A
Sbjct: 117 D-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175
Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLE 326
           A  GH+EV+K L+ +  +     D  G+ AL H  +   + D+  +  L+    + + + 
Sbjct: 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
             +G T L +A++K    +V+ LL  E I++N  +  G++ L +A +L   ++  LL + 
Sbjct: 236 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295
Query: 387 GAA 389
           GA+
Sbjct: 296 GAS 298

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 15/243 (6%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
           G TPL+ A +     IVE +L+H       +  +NG   F +AA  G +++LK  L +  
Sbjct: 39  GWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSA 269
           + V   D    TA   AA  G +  + FL +  +N+          +  R  G T L  A
Sbjct: 97  D-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLE 326
           A  GH+EV+K L+ +  +     D  G+ AL H  +   + D+  +  L+    + + + 
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215
Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
             +G T L +A++K    +V+ LL  E I++N  +  G++ L +A +L   ++  LL + 
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
Query: 387 GAA 389
           GA+
Sbjct: 276 GAS 278

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
           A  G LE LKE +    +L   TD    TALH A + GH ++V FLL++   +     + 
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
           G + LH AA  G  E+VKAL+ K        ++ G T LH A      +I + L+     
Sbjct: 73  GWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
           PD      +D+   TA+H A  KG  +++  LL  +    N  +  G +PL +A      
Sbjct: 132 PDA-----KDHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEERV 185
Query: 378 ELFSLLKEAGAA 389
           E   LL   GA+
Sbjct: 186 EEAKLLVSQGAS 197

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
           L  AA  G  D V  L+   +N A +   +  G T LH AA+ GHLE+V+ L+       
Sbjct: 18  LLEAARAGQDDEVRILM---ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
              D  G T LH+A    + +IV  L++    V   +D +G T LH+A   G  +IV  L
Sbjct: 75  -AWDNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
           L   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 133 LKY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +   D  G+T LH+A K G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY-GA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDH 394
           DVN+ +  G +PL +A   G+ E+  +L + GA  ++KD+
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY 111

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   ++ A    + G+T LH AA +GHLE+V+ L+         
Sbjct: 6   LLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-A 63
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D  G T LH+A    + +IV  L++    V   +D  G T L++A   G  +IV  LL 
Sbjct: 64  VDTNGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
             G DVN+ +K G++  D++  +GN +L  +L+
Sbjct: 123 -HGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  AAR G  + V+ L++         D  G+T LHMA    + +IV  L+R    
Sbjct: 3   GKKLLE-AARAGQDDEVRILMANGADAN-AYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V  ++ N G T LH+A   G  +IV  LL   G DVN+ +  G +PL +A   G+ E+  
Sbjct: 61  VNAVDTN-GTTPLHLAASLGHLEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 382 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQ 418
           +L +        HG   +A  +  +T  DI  D+ ++
Sbjct: 119 VLLK--------HGADVNAQDKFGKTAFDISIDIGNE 147

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
           G    H+    GHLE+++ LL ++   V  +D S  T LH AA +GH+++V  LL+  ++
Sbjct: 47  GITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           +  +    G T LH AA  GHLE+V+ L+        + DK G+TA  +++   NED+
Sbjct: 106 VNAMDY-QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDL 161

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTG 289
           L  AA  G  D V  L+   +N A +  N+  G T LH     GHLE+++ L+       
Sbjct: 18  LLEAARAGQDDEVRILM---ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN 74
Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
             +DK G T LH+A    + +IV  L++    V  + D +G T LH+A + G  +IV  L
Sbjct: 75  -ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLEIVEVL 132
Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
           L   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 133 LKY-GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
           A  G L+ LKE +    +L   TD    TALH A + GH ++V FLL++   +     + 
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
           G + LH AA  G  E+VKAL+ K        ++ G T LH A      +I + L+     
Sbjct: 73  GWSPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 371
           PD      +D+   TA+H A  KG  ++V  LL  +    N  +  G +PL +A
Sbjct: 132 PDA-----KDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
           A  G L+ LKE +    +L   TD    TALH A + GH ++V FLL++   +     + 
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDA 72
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---- 317
           G + LH AA  G  E+VKAL+ K        ++ G T LH A      +I + L+     
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 371
           PD      +D+   TA+H A  KG  ++V  LL  +    N  +  G +PL +A
Sbjct: 132 PDA-----KDHYDATAMHRAAAKGNLKMVHILLFYKA-STNIQDTEGNTPLHLA 179

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
           TALH A    ++D+V FL+E  +N+ +   N G   LH+AA  G+L++ + L+S+    G
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 290 FRTDKKGQTALHMAVKG------QNE----DIVLELIRPDPSVLKLEDNK---------- 329
              + +G T L +A +       QNE     + +E  R +   + L D +          
Sbjct: 134 A-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 330 ------GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
                 G TALH+A  KG T++++ L+     DVN  +  G +PL  A   G  E   +L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 384 KE 385
            E
Sbjct: 252 VE 253

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++      +G T LH AA  GHLE+V+ L+         
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D  G T LH+A    + +IV  L++    V  + D  G+T LH+A   G  +IV  LL 
Sbjct: 76  IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
             G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++      +G T LH AA  GHLE+V+ L+         
Sbjct: 18  LLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-A 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D  G T LH+A    + +IV  L++    V  + D  G+T LH+A   G  +IV  LL 
Sbjct: 76  IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
             G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AAA G  D V  L+   +++     +NG T LH AA  G LE+V+ L+ K+ +    
Sbjct: 10  LLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNA 67
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
           +D  G T LH+A    + +IV  L++    V    D  G T LH+A   G+ +IV  LL 
Sbjct: 68  SDSAGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
             G DVN+ +  G +  D++   G  +L  +L+
Sbjct: 127 -HGADVNAQDALGLTAFDISINQGQEDLAEILQ 158

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
           +G T LH+AA+ GH E VK L+SK      R+ K G T LH+A K  + +IV +L+    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 359
           + +      GNT  H+A K G  +IV+ LL  +G DVN+
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 294 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 353
           K G T LH A K  + + V +L+     V       GNT LH+A K G  +IV+ LL+ +
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-K 64
Query: 354 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           G DVN+ +K G +P  +A+K G+ E+  LL   GA
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 4/154 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G  D V  L+   +++      +G T LH AA  GHLE+V+ L+ K+ +    
Sbjct: 18  LLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNA 75
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D  G T L +A    + +IV E++  + + +   D +G+T LH+A   G  +IV  LL 
Sbjct: 76  VDHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
             G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 -NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  AAR G  + V+ L++         D+KG T LH+A    + +IV  L++    
Sbjct: 15  GKKLLE-AARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V    DN G+T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NAHDNDGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
           +L++
Sbjct: 131 ILQK 134

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +   D KGNT LH+A      +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
           DVN+ +  G +PL +A   G+ E+  +L +        HG   +A  +  +T  DI  D
Sbjct: 72  DVNAHDNDGSTPLHLAALFGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L +AAA+G ++ +  LL+ + N+       G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L +AAA+G ++ +  LL+ + N+       G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 21/216 (9%)
Query: 161 TPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELL--G 215
           +P++ AA  GH L +  ++     +N+ TA     +     H A   GHL  +K LL  G
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNIITA-----DHVSPLHEACLGGHLSCVKILLKHG 59
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275
              N V T D    T L  A   G  D VN LL+  +++     ++  + +H AAR GH+
Sbjct: 60  AQVNGV-TADWH--TPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHV 114
Query: 276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG-NTAL 334
           E V +L++   +   +    G T L++A + Q    V +L+    S   +   KG ++ L
Sbjct: 115 ECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLE---SGADVNQGKGQDSPL 170
Query: 335 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 370
           H A+ +  ++ + CLL   G D  + N  G+ P+++
Sbjct: 171 H-AVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Query: 161 TPLYVAAESGHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELL--G 215
           +P++ AA  GH L +  ++     +N+ TA     +     H A   GHL  +K LL  G
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITA-----DHVSPLHEACLGGHLSCVKILLKHG 115
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275
              N V T D    T L  A   G  D VN LL+  +++     ++  + +H AAR GH+
Sbjct: 116 AQVNGV-TADWH--TPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHV 170
Query: 276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG-NTAL 334
           E V +L++   +   +    G T L++A + Q    V +L+    S   +   KG ++ L
Sbjct: 171 ECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLE---SGADVNQGKGQDSPL 226
Query: 335 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 370
           H  ++    ++  CLL   G D  + N  G+ P+++
Sbjct: 227 HAVVRTASEELA-CLLMDFGADTQAKNAEGKRPVEL 261

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L +AAA+G ++ +  LL+ + N+       G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLG 215
           N  GET L++A+  G    VE +LQ  N    ++    G+   H A   GHL+V+ ELL 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVV-ELLL 63
Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL 248
           +   LV TT     + LH AA  GH+D+V  LL
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 194 GYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
           G    H+A+ +G +  ++ LL  G  PN+    D +  T LH A   GH+ VV  LL+  
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
           + +      N  + LH AA+ GH+++VK L+S
Sbjct: 67  ALVNTTGYQN-DSPLHDAAKNGHVDIVKLLLS 97

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 292 TDKKGQTALHMA-VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
           T+ +G+T LH+A +KG    +  E +  + S   ++D+ G T LH A   G  ++V  LL
Sbjct: 6   TNHRGETLLHIASIKGDIPSV--EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 391
             + + VN+     +SPL  A K G+ ++  LL   GA+ +
Sbjct: 64  QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L +AAA+G ++ +  LL+ + N+       G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L +AAA+G ++ +  LL+ + N+       G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 133/325 (40%), Gaps = 75/325 (23%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
           AAR+GN  ++M +L   + N         +    TPL++AA      IV+ +LQH     
Sbjct: 31  AARSGNEEKLMALLTPLNVN-----CHASDGRKSTPLHLAAGYNRVRIVQLLLQH----G 81
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
           A + A++  G    H A   GH EV  ELL +    V   DL   T LH AA++  ++V 
Sbjct: 82  ADVHAKDKGGLVPLHNACSYGHYEV-TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 245 NFLLEIDSNLAKIARNNGKTVL------------------HS---AARMGHLEVVKALVS 283
           + LL   ++   +   +GK+ +                  HS   AAR   L  VK  ++
Sbjct: 141 SLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199
Query: 284 KDPSTGFRTDKKGQTALHMAV----------------KGQN------------------- 308
            +    F+  +  +TALH AV                KG N                   
Sbjct: 200 LE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258
Query: 309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
            + V+E++    + +   D+ G TALH A   G  Q  R LLS  G D + ++  G +  
Sbjct: 259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFT-- 315
Query: 369 DVAEKLGNTELFSLLKEAGAAHSKD 393
             A ++GN  +  +L E+    + D
Sbjct: 316 --AAQMGNEAVQQILSESTPMRTSD 338

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 280 ALVSKDPST-GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
           AL   DPS     T +  +  L  A +  NE+ ++ L+ P        D + +T LH+A 
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
              R +IV+ LL   G DV++ +K G  PL  A   G+ E+  LL + GA 
Sbjct: 67  GYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV--SKDP 286
           S ++H  AAQG +D +   L    NL       G T L  A+  G +E V+ L+    DP
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
                  K+ ++AL +A  G   DIV  L+  D  +  + D  G T L  A++    + V
Sbjct: 63  HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCV 118
Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
             LL+  G D+ +   +G +P+D+A  LG
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALG 146

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 4/123 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  AAR G  + V+ L++         D+ G T LH+A +  + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V   EDN G T LH+A  +G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NAEDNFGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLK 384
           +L+
Sbjct: 131 ILQ 133

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 278
           V   D +  T LH AA +GH+++V  LL+   D N + I    G+T LH AA +GHLE+V
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAATVGHLEIV 96
Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           + L+        + DK G+TA  +++   NED+
Sbjct: 97  EVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  A R G  + V+ L++         D  G T LH+A K  + +IV  L++    
Sbjct: 15  GKKLLE-ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V    D  G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
           +L++
Sbjct: 131 ILQK 134

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALI 174
           S     D QL  AA+AG++  V ++      N  +D+  +++    TPL+ AA      +
Sbjct: 5   SGNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSV 59
Query: 175 VEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL 232
           VE +LQH     A + A++  G    H A   GH EV  ELL +   +V   DL   T L
Sbjct: 60  VEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPL 114
Query: 233 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
           H AAA+G  ++   LL+  ++  K  R +G T L
Sbjct: 115 HEAAAKGKYEICKLLLQHGADPTKKNR-DGNTPL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G ++ V  L  + S   +       T LH AA    + VV+ L+        +
Sbjct: 14  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 292 TDKKGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
            DK G   LH A   G  E  V EL+    +V+ + D    T LH A  KG+ +I + LL
Sbjct: 74  -DKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              G D    N+ G +PLD+  K G+T++  LL+   A
Sbjct: 131 Q-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 166

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV--SKDP 286
           S ++H  AAQG +D +   L    NL       G T L  A+  G +E V+ L+    DP
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
                  K+ ++AL +A  G   DIV  L+  D  +  + D  G T L  A+     + V
Sbjct: 63  HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCV 118
Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
             LL+  G D+ +   +G +P+D+A  LG
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALG 146

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
            D QL  AA+AG++  V ++      N  +D+  +++    TPL+ AA      +VE +L
Sbjct: 8   ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 62
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
           QH     A + A++  G    H A   GH EV  ELL +   +V   DL   T LH AAA
Sbjct: 63  QH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAA 117
Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
           +G  ++   LL+  ++  K  R +G T L
Sbjct: 118 KGKYEICKLLLQHGADPTKKNR-DGNTPL 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G ++ V  L  + S   +       T LH AA    + VV+ L+        +
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 292 TDKKGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
            DK G   LH A   G  E  V EL+    +V+ + D    T LH A  KG+ +I + LL
Sbjct: 72  -DKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              G D    N+ G +PLD+  K G+T++  LL+   A
Sbjct: 129 Q-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
           V   D +  T LH AA +GH+++V  LL+  +++   + + G+T LH AA +GHLE+V+ 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEV 98
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           L+        + DK G+TA  +++   NED+
Sbjct: 99  LLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  A R G  + V+ L++         D  G T LH+A K  + +IV  L++    
Sbjct: 15  GKKLL-EATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V    D+ G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
           +L++
Sbjct: 131 ILQK 134

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
            D QL  AA+AG++  V ++      N  +D+  +++    TPL+ AA      +VE +L
Sbjct: 12  ADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQS----TPLHFAAGYNRVSVVEYLL 66
Query: 180 QHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
           QH     A + A++  G    H A   GH EV  ELL +   +V   DL   T LH AAA
Sbjct: 67  QH----GADVHAKDKGGLVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAA 121
Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
           +G  ++   LL+  ++  K  R +G T L
Sbjct: 122 KGKYEICKLLLQHGADPTKKNR-DGNTPL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           L  AA  G ++ V  L  + S   +       T LH AA    + VV+ L+        +
Sbjct: 16  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 292 TDKKGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
            DK G   LH A   G  E  V EL+    +V+ + D    T LH A  KG+ +I + LL
Sbjct: 76  -DKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              G D    N+ G +PLD+  K G+T++  LL+   A
Sbjct: 133 Q-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 168

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 198 FHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS--- 252
            H+A      E+ + LLG    P L    D   +T LH A  QG +  V  L +  +   
Sbjct: 49  LHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 253 --NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 310
             ++ K    NG T LH A+  G+L +V+ LVS       +    G+TALH+AV  QN D
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 311 IVLELIR 317
           +V  L++
Sbjct: 166 LVSLLLK 172

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 198 FHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS--- 252
            H+A      E+ + LLG    P L    D   +T LH A  QG +  V  L +  +   
Sbjct: 46  LHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 253 --NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 310
             ++ K    NG T LH A+  G+L +V+ LVS       +    G+TALH+AV  QN D
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 311 IVLELIR 317
           +V  L++
Sbjct: 163 LVSLLLK 169

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVK 279
           V   D +  T LH AA +GH+++V  LL+  +++   AR+  G+T LH AA +GHLE+V+
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN--ARDIWGRTPLHLAATVGHLEIVE 97
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
            L+        + DK G+TA  +++   NED+
Sbjct: 98  VLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  A R G  + V+ L++         D  G T LH+A K  + +IV  L++    
Sbjct: 15  GKKLLE-ATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V    D  G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NARDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
           +L++
Sbjct: 131 ILQK 134

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
           V   D    T LH AA  GH+++V  LL+  +++     N G+T LH AA   HLE+V+ 
Sbjct: 40  VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADHLEIVEV 98
Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           L+        + DK G+TA  +++   NED+
Sbjct: 99  LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  AAR G  + V+ L +         D  G T LH+A    + +IV E++  + +
Sbjct: 15  GKKLLE-AARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIV-EVLLKNGA 71
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
            +    N G T LH+A      +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLKE 385
           +L++
Sbjct: 131 ILQK 134

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +   D  G+T LH+A   G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
           DVN+    G +PL +A    + E+  +L +        HG   +A  +  +T  DI  D
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 188 SIPARNGYDSFHVAAKQGHLEVLKELL-------------GEFPNLVMTTDLSCSTALHT 234
           +I   NG  + H +    +  V+++LL             G  P ++        TAL T
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML--------TALAT 156
Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 294
              Q  I+ V  L  +  N+   A   G+T L  A   G ++VVKAL++ +     + D 
Sbjct: 157 LKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DD 214
Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            G TAL  A +  +++I   L+      + L D  G+TAL +A+  G+++I   L S
Sbjct: 215 DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA----VKGQNE 309
           +  IA +NG T LH +    +  VV+ L+        + ++ G + + +     +K Q++
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 310 -DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
            + VL+L R   ++       G TAL +A+  GR  +V+ LL+ E  DVN  +  G + L
Sbjct: 163 IETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEA-DVNVQDDDGSTAL 220
Query: 369 DVAEKLGNTELFSLL 383
             A + G+ E+  LL
Sbjct: 221 MCACEHGHKEIAGLL 235

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 378
           DPS   L +++G TALH A+  G T+IV+ L+   G++VN+ +  G +PL  A    N +
Sbjct: 62  DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 379 LFSLLKEAGAA 389
           +   L E+GAA
Sbjct: 118 VCKFLVESGAA 128

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 378
           DPS   L +++G TALH A+  G T+IV+ L+   G++VN+ +  G +PL  A    N +
Sbjct: 62  DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 379 LFSLLKEAGAA 389
           +   L E+GAA
Sbjct: 118 VCKFLVESGAA 128

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRT-DKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 324
           LH AA+ G+L  ++  +  D   G    DK G TAL+ A  G ++DIV E +   P++  
Sbjct: 77  LHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIV-EXLFTQPNIEL 133
Query: 325 LEDNK-GNTALHIAIKKGRTQIVRCLLS 351
            + NK G+TALH A  KG   IV+ LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  AAR G  + V+ L++         DK G T LH+A    + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V  + D  G T LH+    G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  VNAI-DAIGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 382 LLK 384
           +L+
Sbjct: 131 ILQ 133

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +  ED  G T LH+A      +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 414
           DVN+++  GE+PL +    G+ E+  +L +        HG   +A  +  +T  DI  D
Sbjct: 72  DVNAIDAIGETPLHLVAMYGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLAA+ G+ S    +L++  + +A+  + +      TPL++AA  GHA IVE +L+H  
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR------TPLHMAASEGHANIVEVLLKH-- 89
Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
              A + A++     + H A +  H EV+ ELL ++   V T    C TA   +   G+ 
Sbjct: 90  --GADVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNE 146
Query: 242 DVVNFL 247
           D+   L
Sbjct: 147 DLAEIL 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           G + LH AA+ GH    + L+    S   RT K  +T LHMA    + +IV  L++    
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V   +D    TALH A +    ++V  L+   G DV++ +K  ++  D++   GN +L  
Sbjct: 93  V-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 382 LLK 384
           +L+
Sbjct: 151 ILQ 153

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 175 VEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
           V+E+LQ    +   +    G    ++A     +E+ K L+    ++ +   +S S  L+ 
Sbjct: 21  VKEILQDTTYQVDEVDTE-GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY- 78
Query: 235 AAAQGHIDVVNFLLE-IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTD 293
           A AQG  +++ ++L+    +L K  R  G  ++  AA  GH++ VK L+          +
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALI-PAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 294 KKGQTALHMAV---KGQN--EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
             G TAL  AV   +G    +DIV +L+  + +   ++DN G TA+  A +KG T+I + 
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIV-KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 349 L 349
           L
Sbjct: 197 L 197

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +  +D  G T LH+A ++G  +IV  LL   G 
Sbjct: 3   GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGA 59
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 387
           DVN+ +K G++  D++   GN +L  +L++A 
Sbjct: 60  DVNAQDKFGKTAFDISIDNGNEDLAEILQKAA 91

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 23/220 (10%)
Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
           G TPL +AA  G  L   E +++    TA                    +V+ +LL +  
Sbjct: 2   GLTPLMIAAVRGGGLDTGEDIENNEDSTA--------------------QVISDLLAQGA 41
Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
            L  T D +  T+LH AA     D    LL+  ++ A    N G+T LH+A     + V 
Sbjct: 42  ELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVF 100
Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
           + L+    +        G T L +A +   E +V +LI  D  +    DN G TALH A 
Sbjct: 101 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAA 159
Query: 339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 378
               T+ V  LL +   + ++ +   E+PL +A + G+ E
Sbjct: 160 AVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYE 198

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 286
            TALH A    H   ++FLL   +    +   N  G+T LH AA +G    V+ L +   
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS------------------------- 321
                 ++ G TALH+A + +       L++P PS                         
Sbjct: 70  GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 322 ---------------------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 360
                                 L+ E+  G+T LH+A+     ++VR LL   G D+N  
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKP 187
Query: 361 NK-AGESPLDVAEKLGNTELFSLLKEAGA 388
               G +PL +A +     +  LL +AGA
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 286
            TALH A    H   ++FLL   +    +   N  G+T LH AA +G    V+ L +   
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS------------------------- 321
                 ++ G TALH+A + +       L++P PS                         
Sbjct: 70  GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 322 ---------------------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 360
                                 L+ E+  G+T LH+A+     ++VR LL   G D+N  
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKP 187
Query: 361 NK-AGESPLDVAEKLGNTELFSLLKEAGA 388
               G +PL +A +     +  LL +AGA
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHA 61
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
           A+      + + LL     D+++    G +PL +A +L 
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 279
           M +DL     L  AA  G  D V  L+   +N A +A    NG T LH AAR GHLEVVK
Sbjct: 2   MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 56
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
            L+        + DK G+TA  +++   NED+ 
Sbjct: 57  LLLEAGADVNAQ-DKFGKTAFDISIDNGNEDLA 88

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +  +D  G+T LH+A + G  ++V+ LL   G 
Sbjct: 7   GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 63
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLK 384
           DVN+ +K G++  D++   GN +L  +L+
Sbjct: 64  DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 279
           M +DL     L  AA  G  D V  L+   +N A +A    NG T LH AAR GHLEVVK
Sbjct: 20  MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
            L+        + DK G+TA  +++   NED+ 
Sbjct: 75  LLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLA 106

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 30/191 (15%)
Query: 216 EFPNL-VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 274
           +FP L  + +D      +H AA +G  D V  L+E   +   I    G T LH A + G 
Sbjct: 7   DFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGC 65
Query: 275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--------PDPSVLKLE 326
           ++  K L S            GQ  +H+AV     D+V+ L+         P+ S+L   
Sbjct: 66  VDTAKYLASVGEVHSLW---HGQKPIHLAVXANKTDLVVALVEGAKERGQXPE-SLLNEC 121
Query: 327 DN-------------KGNTALHIAIKKGRTQI--VRCLLSIEGIDVNSLNKAGESPLDVA 371
           D              KG TALH  +  G   +  ++ L+ + G    + +KA E+PL  A
Sbjct: 122 DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQL-GASPTAKDKADETPLXRA 180
Query: 372 EKLGNTELFSL 382
            +  N E   L
Sbjct: 181 XEFRNREALDL 191

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 64
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
           A+      + + L+     D+++    G +PL +A +L 
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 26/211 (12%)
Query: 200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR 259
           +AAK+  ++ L +LL      V        TALH AA   +++    L+E    L     
Sbjct: 9   LAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM 68
Query: 260 NN----GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK------------GQTALHMA 303
            +    G+T LH A    ++ +V+AL+++  S   R                G+  L  A
Sbjct: 69  TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA 128
Query: 304 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI----KKGRTQIVRCLLSIEGID-VN 358
               +E+IV  LI     + + +D+ GNT LHI I    K    Q+   LLS +G D + 
Sbjct: 129 ACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187
Query: 359 SL----NKAGESPLDVAEKLGNTELFSLLKE 385
           SL    N  G +P  +A   GN  +F  L +
Sbjct: 188 SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 55/131 (41%), Gaps = 26/131 (19%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK----KGQTALHMAVKGQNEDIVLELIR 317
           G+T LH AA   +LE    L+   P   F        +GQTALH+AV  QN ++V  L  
Sbjct: 37  GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL-- 94
Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
                               + +G +   R   S+     ++L   GE PL  A  +G+ 
Sbjct: 95  --------------------LARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 378 ELFSLLKEAGA 388
           E+  LL E GA
Sbjct: 135 EIVRLLIEHGA 145

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
           D +G TAL  AVK     I  +L+    +V   +D  G T L  +I  G +++   LL  
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLE- 122
Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            G +VN  N  GE+PL VA K G +E+   L E GA
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 312
           A+ AR N   +L  AA  G LEVV+  V +  DPS   + +++G TALH A+ G N  IV
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIV 70
Query: 313 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
             LI    +V    D+ G T LH A     T I   L+
Sbjct: 71  DFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALV 107

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 39  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 97
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 374
           A+      + + L+     D+++    G +PL +A +L
Sbjct: 98  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 135

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 96
Query: 337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 374
           A+      + + L+     D+++    G +PL +A +L
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
           AARAG    V  IL +  A+     ++ K++ G TPLY+A   GH  IVE +L++     
Sbjct: 21  AARAGQDDEV-RILMANGAD-----VNAKDEYGLTPLYLATAHGHLEIVEVLLKN----G 70
Query: 187 ASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
           A + A +  G+   H+AA  GHLE+ + LL    + V   D    TA   +   G+ D+ 
Sbjct: 71  ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLA 129
Query: 245 NFL 247
             L
Sbjct: 130 EIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
           GK +L  AAR G  + V+ L++       + D+ G T L++A    + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
           V  + D  G T LH+A   G  +I   LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  VNAV-DAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Query: 382 LLKE 385
           +L++
Sbjct: 131 ILQK 134

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+  L  A  GQ++++   ++  + + +  +D  G T L++A   G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71
Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 411
           DVN+++  G +PL +A  +G+ E+  +L +        HG   +A  +  +T  DI
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLK--------HGADVNAQDKFGKTAFDI 119

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
           L  AA  G ++ V+ L+ ++       ++ G+TAL + + G +  + LEL++   S   +
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASP-NV 69
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
           +D  G + +H A + G    ++ L+   G DVN+L+  G  P+ +A + G++ + S L  
Sbjct: 70  QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 386 AGAAHSKD 393
               H +D
Sbjct: 129 ESDLHHRD 136

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 325
           L  AA  G ++ V+ L+ ++       ++ G+TAL + + G +  + LEL++   S   +
Sbjct: 14  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASP-NV 71
Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
           +D  G + +H A + G    ++ L+   G DVN+L+  G  P+ +A + G++ + S L  
Sbjct: 72  QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 386 AGAAHSKD 393
               H +D
Sbjct: 131 ESDLHHRD 138

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
           V+ + + +  +L   TD + +TALH AAA    D    LLE  ++ A I  N G+T LH+
Sbjct: 38  VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96
Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
           A       V + L+    +        G T L +A +   E ++ +LI     V  ++D 
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 155
Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
            G +ALH A           LL   G + +  N   E+PL +A + G+ E   +L
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	630
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-57
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-56
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-55
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-51
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-56
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-52
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-45
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-52
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-50
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-52
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-44
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-51
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-47
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-46
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-44
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-51
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-46
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-50
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-46
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-50
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-46
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-42
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-50
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-49
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-47
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-44
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-49
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-40
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-49
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-40
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-48
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-45
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-48
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-40
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-47
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-43
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-44
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-44
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-43
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-44
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-41
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-23
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-43
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-40
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-27
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-43
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-38
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-39
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-36
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-37
2rfa_A	232	Transient receptor potential cation channel subfa	6e-35
2rfa_A	232	Transient receptor potential cation channel subfa	1e-32
2rfa_A	232	Transient receptor potential cation channel subfa	4e-24
2rfa_A	232	Transient receptor potential cation channel subfa	7e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-37
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	1e-36
2etb_A	256	Transient receptor potential cation channel subfam	5e-30
2etb_A	256	Transient receptor potential cation channel subfam	9e-25
2etb_A	256	Transient receptor potential cation channel subfam	4e-17
2etb_A	256	Transient receptor potential cation channel subfam	5e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-36
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-35
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	2e-33
2pnn_A	273	Transient receptor potential cation channel subfa	3e-30
2pnn_A	273	Transient receptor potential cation channel subfa	7e-27
2pnn_A	273	Transient receptor potential cation channel subfa	2e-18
2pnn_A	273	Transient receptor potential cation channel subfa	5e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-32
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-29
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-29
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-28
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  197 bits (504), Expect = 6e-57
 Identities = 87/302 (28%), Positives = 133/302 (44%), Gaps = 27/302 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH+AA+ G +  V E+L   DA+      +   + G TPL+VA    +  IV+ +L    
Sbjct: 150 LHVAAKYGKVR-VAELLLERDAH-----PNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-- 201

Query: 184 LETASI--PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
               S   PA NGY   H+AAKQ  +EV + LL    +      +   T LH AA +GH 
Sbjct: 202 --GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHA 258

Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTA 299
           ++V  LL   +N   +   +G T LH  A+ GH+ V   L+           T + G T 
Sbjct: 259 EMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA---TTRMGYTP 314

Query: 300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 359
           LH+A    N  +V  L++    V   +   G + LH A ++G T IV  LL   G   N 
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNE 372

Query: 360 LNKAGESPLDVAEKLGNTELFSLLKEAGA------AHSKDHGKPPSATKQLKQTVSDIKH 413
           ++  G +PL +A++LG   +  +LK             K     P    ++     D   
Sbjct: 373 VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVSEDEGE 432

Query: 414 DV 415
           ++
Sbjct: 433 EL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  196 bits (502), Expect = 1e-56
 Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 23/282 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +    G+ G   LH+A+  G+L  +++ L    A+      +  N + ETPL++AA +GH
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLP-IVKNLLQRGAS-----PNVSNVKVETPLHMAARAGH 59

Query: 172 ALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSC 228
             + + +LQ+   +   +   ++     H AA+ GH  ++K LL     PN       + 
Sbjct: 60  TEVAKYLLQNKAKVNAKA---KDDQTPLHCAARIGHTNMVKLLLENNANPN---LATTAG 113

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
            T LH AA +GH++ V  LLE +++        G T LH AA+ G + V + L+ +   P
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172

Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
           +      K G T LH+AV   N DIV  L+    S        G T LHIA K+ + ++ 
Sbjct: 173 N---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVA 228

Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           R LL   G   N+ +  G +PL +A + G+ E+ +LL    A
Sbjct: 229 RSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  193 bits (494), Expect = 1e-55
 Identities = 82/280 (29%), Positives = 138/280 (49%), Gaps = 19/280 (6%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +    + +  LH+AARAG+   V + L    A      ++ K ++ +TPL+ AA  GH
Sbjct: 39  SPNVSNVKVETPLHMAARAGHTE-VAKYLLQNKAK-----VNAKAKDDQTPLHCAARIGH 92

Query: 172 ALIVEEMLQHM-NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCST 230
             +V+ +L++  N   A+     G+   H+AA++GH+E +  LL +  +          T
Sbjct: 93  TNMVKLLLENNANPNLAT---TAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFT 148

Query: 231 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPST 288
            LH AA  G + V   LLE D++    A  NG T LH A    +L++VK L+ +   P  
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH- 206

Query: 289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
                  G T LH+A K    ++   L++   S    E  +G T LH+A ++G  ++V  
Sbjct: 207 --SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVAL 263

Query: 349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           LLS +  + N  NK+G +PL +  + G+  +  +L + G 
Sbjct: 264 LLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  182 bits (465), Expect = 2e-51
 Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 24/270 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++ GK G   LH+A    NL  ++++L     +            G TPL++AA+   
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLD-IVKLLLPRGGS-----PHSPAWNGYTPLHIAAKQNQ 224

Query: 172 ALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC 228
             +   +LQ+    N E+       G    H+AA++GH E++  LL +  N     + S 
Sbjct: 225 VEVARSLLQYGGSANAES-----VQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSG 278

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
            T LH  A +GH+ V + L++    +       G T LH A+  G++++VK L+    D 
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337

Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
           +      K G + LH A +  + DIV  L++   S      + G T L IA + G   + 
Sbjct: 338 N---AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYISVT 393

Query: 347 RCLLSI--EGIDVNSLNKAGESPLDVAEKL 374
             L  +  E   V   +K   S  +  +++
Sbjct: 394 DVLKVVTDETSFVLVSDKHRMSFPETVDEI 423

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  194 bits (495), Expect = 1e-56
 Identities = 64/307 (20%), Positives = 116/307 (37%), Gaps = 41/307 (13%)

Query: 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG 170
            +    G + ++   +AA  G  S + + L     ++   ++     E      +AAE+G
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSAL-DTLCLLLTSDE--IVKVIQAENYQAFRLAAENG 139

Query: 171 HALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLV-MTTDLSCS 229
           H  ++  + +    E  ++     Y +F +AA+ GHL VL  L    P            
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY 199

Query: 230 TALHTAAAQ-GHIDVVNFLLEIDSNLAK-----------------IARNNGKTVLHSAAR 271
            A   AA   GH +V+NFLL+    LA                      N    +H A +
Sbjct: 200 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK 259

Query: 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE----- 326
           + + + V  LV+K          +G   L   ++ +N++++L+ IR   S+  ++     
Sbjct: 260 LSNPDGVFDLVTKSEC------LQGFYMLRNLIR-RNDEVLLDDIRFLLSIPGIKALAPT 312

Query: 327 ---DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
                  N  L +A++ G       LLSI  +    L     +   + E  G  +L ++ 
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSV----LALTKANNYYINETGGRLDLRAVA 368

Query: 384 KEAGAAH 390
            E    H
Sbjct: 369 LEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 95.8 bits (238), Expect = 2e-21
 Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 5/182 (2%)

Query: 196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA 255
                     +    K+L  +     + +++ C  A         +D +  LL  D  + 
Sbjct: 64  RQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI-TGCSSALDTLCLLLTSDEIVK 122

Query: 256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT-DKKGQTALHMAVKGQNEDIVLE 314
            I +         AA  GHL V+  L    P+        +   A  +A +  +  ++  
Sbjct: 123 VI-QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR 181

Query: 315 LIRPDPSVL-KLEDNKGNTALHI-AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 372
           L    P+    +   +   A    A+ +G   ++  LL    +   +     E       
Sbjct: 182 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN 241

Query: 373 KL 374
             
Sbjct: 242 PF 243

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 82.3 bits (203), Expect = 5e-17
 Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 15/192 (7%)

Query: 202 AKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN 261
               + E +   L    N+                   H +     L  D++   I    
Sbjct: 42  MTLSYKEAIHIFLPGTKNME-------QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEV 94

Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
              V         L+ +  L++ D         +   A  +A +  +  ++  L    P+
Sbjct: 95  ICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPT 153

Query: 322 V-LKLEDNKGNTALHIAIKKGRTQIVRCLLSI----EGIDVNSLNKAGESPLDVAEKLGN 376
             + +   +   A  +A + G   ++  L  +        + + N    +    A   G+
Sbjct: 154 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN--YYAFRWAAVGRGH 211

Query: 377 TELFSLLKEAGA 388
             + + L +   
Sbjct: 212 HNVINFLLDCPV 223

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  179 bits (458), Expect = 1e-52
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 12/244 (4%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKE 212
             +      +  A + G      E+++   ++       +      H AA    ++++K 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD---KENVTLLHWAAINNRIDLVKY 60

Query: 213 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 272
            + +   +        ST LH A  QGH+ +V  L++  ++   +    G + +H AA+ 
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQF 119

Query: 273 GHLEVVKALVSK--DPSTGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNK 329
           GH  +V  L++K  D       D+ G T L  A  +  + D    L+  + SV   +   
Sbjct: 120 GHTSIVAYLIAKGQDVDM---MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH 176

Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
            NTALH A+  G T ++  LL   G +V++ N  GES LD+A++  N  + + L+EA  A
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235

Query: 390 HSKD 393
              D
Sbjct: 236 KGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  161 bits (409), Expect = 1e-45
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 17/244 (6%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +           +  A + G   R    L     +     + + ++E  T L+ AA +  
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERC-RELVEAGYD-----VRQPDKENVTLLHWAAINNR 54

Query: 172 ALIVEEMLQHMNLETASIPARN---GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC 228
             +V+  +       A +            H A +QGHL ++ +L+    +     D   
Sbjct: 55  IDLVKYYISK----GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEG 109

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH-LEVVKALVSKDPS 287
            + +H AA  GH  +V +L+    ++  +   NG T L  AA   H ++  + L++ + S
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                     TALH AV   N  ++  L+    +V   ++ KG +AL +A ++    ++ 
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMIN 227

Query: 348 CLLS 351
            L  
Sbjct: 228 HLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  118 bits (299), Expect = 2e-30
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-M 182
           LH A R G+LS ++  L    A+      S  + EG + +++AA+ GH  IV  ++    
Sbjct: 80  LHWATRQGHLS-MVVQLMKYGAD-----PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133

Query: 183 NLETASIPARNGYDSFHVAAKQGH-LEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
           +++      +NG      AA + H ++  + LL    ++ +      +TALH A   G+ 
Sbjct: 134 DVDMMD---QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190

Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
            V++ LLE  +N+       G++ L  A +  ++ ++  L   
Sbjct: 191 TVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQEA 232

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  183 bits (466), Expect = 2e-52
 Identities = 59/295 (20%), Positives = 106/295 (35%), Gaps = 28/295 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
               P     ++LH  A AG+   + E +     N          +   T L+  A +  
Sbjct: 86  IPTEPEPESPIKLHTEA-AGSY-AITEPITRESVNIIDP------RHNRTVLHWIASNSS 137

Query: 172 ALIVEEMLQHMNLETASIPA------RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTD 225
           A   E+++ H   E  +  A       +      +A       ++  L+    +     +
Sbjct: 138 AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYN 196

Query: 226 LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLE---VVKA 280
            S  +ALH AAA     ++ ++L        I     NG T L   A     +     K 
Sbjct: 197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256

Query: 281 LVSK-------DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 333
           LV K         +       KG+TALH A +  N  IV  L+    S    +D  G T 
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 316

Query: 334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           + +A ++GR ++V  L+  +G  V +++    +   +A+   +  +  +      
Sbjct: 317 IMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  177 bits (450), Expect = 5e-50
 Identities = 55/303 (18%), Positives = 109/303 (35%), Gaps = 34/303 (11%)

Query: 107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA 166
           G  K+ ++                GN   + +   +          ++   E    L+  
Sbjct: 48  GYIKRQRNELQHYSLYPNPQGYGNGNDF-LGDFNHTNLQI-----PTEPEPESPIKLHTE 101

Query: 167 AESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVM--- 222
           A +G   I E + +  +N+       R+     H  A     E  ++L+       +   
Sbjct: 102 A-AGSYAITEPITRESVNIIDP----RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 223 ----TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
                 D   +T L  A       +V +L++  ++   I   + ++ LH AA      ++
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMM 215

Query: 279 KALVSKDPSTGF---RTDKKGQTALHMAVKGQNEDIVLE---LI-------RPDPSVLKL 325
             +++            D+ G TAL +    +  D V     L+           +    
Sbjct: 216 VYMLNSTK-LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274

Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
           E  KG TALH A +     IV+ L+  +G + +  ++ G++P+ +A + G  E+   L +
Sbjct: 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334

Query: 386 AGA 388
            GA
Sbjct: 335 QGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  141 bits (357), Expect = 4e-37
 Identities = 46/296 (15%), Positives = 97/296 (32%), Gaps = 40/296 (13%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
           +  + + H +  +   S    +L++      K   ++       P      +G+  + + 
Sbjct: 24  EEKNRKNHQSITSSQHS----LLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDF 79

Query: 178 MLQHMNLETASIPARNGYDS--FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA 235
              +                   H  A  G   + + +  E  N++        T LH  
Sbjct: 80  NHTN----LQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN--RTVLHWI 132

Query: 236 AAQGHIDVVNFLLEIDSNL-----AKI--ARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
           A+    +    L+  ++       A +     +  T L  A       +V  L+    DP
Sbjct: 133 ASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 192

Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE--DNKGNTALHIAIKKGRT- 343
           +     +K  ++ALH A   ++  +++ ++        +E  D  G TAL I        
Sbjct: 193 TI---YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 249

Query: 344 --QIVRCLLSIEGIDVNSL--------NKAGESPLDVAEKLGNTELFS-LLKEAGA 388
                + L+  +G  V+             G + L  A ++ N  +   L+ E G+
Sbjct: 250 QVASAKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  180 bits (459), Expect = 3e-52
 Identities = 74/283 (26%), Positives = 124/283 (43%), Gaps = 32/283 (11%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH- 181
           L  A +  ++  +++ L    AN   ++      + G TPL+ A +     IVE +L+H 
Sbjct: 9   LIKAVQNEDVD-LVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 182 MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
            +        +NG   F +AA  G +++LK  L +  + V   D    TA   AA  G +
Sbjct: 63  ADPVLRK---KNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKV 118

Query: 242 DVVNFLLE---------IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK---DPSTG 289
             + FL +               +  R  G T L  AA  GH+EV+K L+ +   D +  
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178

Query: 290 FRTDKKGQTALHMAV----KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
              D  G+ AL  A+        E I   L+     V  +   +G T L +A++K    +
Sbjct: 179 ---DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGL 234

Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           V+ LL  E I++N  +  G++ L +A +L   ++  LL + GA
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  158 bits (402), Expect = 4e-44
 Identities = 50/244 (20%), Positives = 94/244 (38%), Gaps = 23/244 (9%)

Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF---HVAAKQGHLEVLKE 212
             E    L  A ++    +V+++L+      A++  +     +   H A +    ++++ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

Query: 213 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 272
           LL    +  +    + +T    AA  G + ++   L   +++       G T    AA  
Sbjct: 58  LLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVY 115

Query: 273 GHLEVVKALVS---------KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL 323
           G ++ +K L           K      R  K G TAL  A +  + +++  L+    + +
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175

Query: 324 KLEDNKGNTALHIAIKKGRT----QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 379
              DN G  AL  A+          I   LL   G DVN   + G++PL +A +  +  L
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 380 FSLL 383
              L
Sbjct: 235 VQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (306), Expect = 6e-31
 Identities = 44/173 (25%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
             L  A     +D+V  LLE  +N+       G T LH+A +M   ++V+ L+    DP 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                 K G T   +A    +  ++   +     V    D  G TA   A   G+ + ++
Sbjct: 67  L---RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALK 122

Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS------------LLKEAGA 388
            L    G +VN   K  E   +   K G T L              LL E GA
Sbjct: 123 FLYK-RGANVNLRRKTKEDQ-ERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (266), Expect = 1e-25
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 258 ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
           A      +L  A +   +++V+ L+    +  F+ ++ G T LH AV+   EDIV  L+R
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
                  L    G T   +A   G  ++++  LS +G DVN  +  G +    A   G  
Sbjct: 61  HGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKV 118

Query: 378 ELFSLLKEAGA 388
           +    L + GA
Sbjct: 119 KALKFLYKRGA 129

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +  G+RG   L LA    +L  V  +L+          ++  + +G+T L +A E   
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-----INDTDSDGKTALLLAVELKL 265

Query: 172 ALIVEEMLQH 181
             I E + + 
Sbjct: 266 KKIAELLCKR 275

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  180 bits (459), Expect = 2e-51
 Identities = 56/279 (20%), Positives = 102/279 (36%), Gaps = 48/279 (17%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           +H+AAR G     +  L     +      + +N+ G T L++A + G     + +     
Sbjct: 24  IHVAARKGQT-DEVRRLIETGVS-----PTIQNRFGCTALHLACKFGCVDTAKYLASV-- 75

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELL------GEFPNLVMTTDLSCSTALHTAAA 237
                    +G    H+A      +++  L+      G+                     
Sbjct: 76  --GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQ-------------MPESLLNE 120

Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG--HLEVVKALVSK--DPSTGFRTD 293
               +V     EI S+   +    G+T LH    +G  +LE++K LV     P+     D
Sbjct: 121 CDEREVN----EIGSH---VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA---KD 170

Query: 294 KKGQTALHMAVKGQNEDIVLELIRPDPSV----LKLEDNKGNTALHIAIKKGRTQIVRCL 349
           K  +T L  A++ +N + +  ++   PS     L   + +GN+ LH AI      +    
Sbjct: 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF 230

Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           +   GIDVN  +     PL ++ +     L   L +   
Sbjct: 231 VE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  170 bits (433), Expect = 1e-47
 Identities = 48/295 (16%), Positives = 100/295 (33%), Gaps = 43/295 (14%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +     + G   LHLA + G +    + L S                G+ P+++A  +  
Sbjct: 45  SPTIQNRFGCTALHLACKFGCV-DTAKYLASVGEV-------HSLWHGQKPIHLAVMANK 96

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
             +V  +++             G     +  +    EV +                  TA
Sbjct: 97  TDLVVALVEG--------AKERGQMPESLLNECDEREVNEIGSHV-------KHCKGQTA 141

Query: 232 LHTAAAQG--HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP-ST 288
           LH     G  +++++  L+++ ++         +T L  A    + E +  ++   P  +
Sbjct: 142 LHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKS 200

Query: 289 GFR---TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
             R    +K+G + LH A+    ED+ +  +     V  +EDN+    L+++++     +
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLL 259

Query: 346 VRCLLS------------IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            + LL               G  V          +  A      E+  LL+E   
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  166 bits (423), Expect = 3e-46
 Identities = 41/269 (15%), Positives = 88/269 (32%), Gaps = 39/269 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG--HALIVEEMLQH 181
             L         V EI     ++        K+ +G+T L+     G  +  +++ ++Q 
Sbjct: 115 ESLLNECDER-EVNEI----GSHV-------KHCKGQTALHWCVGLGPEYLEMIKILVQL 162

Query: 182 MNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNL----VMTTDLSCSTALHTA 235
                AS  A+          A +  + E L  ++   P+     +   +   ++ LH A
Sbjct: 163 ----GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA 218

Query: 236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK----------- 284
                 DV    +E+  ++  +  N     L+ + R   + + K L+ K           
Sbjct: 219 ILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277

Query: 285 -DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 343
            + +T           +  A     ++++  L      V     N G        KK   
Sbjct: 278 HNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKRKKKAAP 336

Query: 344 QIVRCLLSIEGIDVNSLNKAGESPLDVAE 372
            + R  L+     V + +++      V++
Sbjct: 337 AVKRMKLA-PSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  160 bits (408), Expect = 3e-44
 Identities = 49/260 (18%), Positives = 87/260 (33%), Gaps = 37/260 (14%)

Query: 137 MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--G 194
           M      +  +        + E    ++VAA  G    V  +++       S   +N  G
Sbjct: 5   MTDFPKLNRIK-------SDDENMEKIHVAARKGQTDEVRRLIETG----VSPTIQNRFG 53

Query: 195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 254
             + H+A K G ++  K L          +       +H A      D+V  L+E     
Sbjct: 54  CTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVALVE----- 105

Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE--DIV 312
              A+  G+            EV +               KGQTALH  V    E  +++
Sbjct: 106 --GAKERGQMPESLLNECDEREVNEIGSHV-------KHCKGQTALHWCVGLGPEYLEMI 156

Query: 313 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE----GIDVNSLNKAGESPL 368
             L++   S    +D    T L  A++    + +  ++        + ++  NK G S L
Sbjct: 157 KILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 369 DVAEKLGNTELFSLLKEAGA 388
             A  +   ++     E G 
Sbjct: 216 HWAILINWEDVAMRFVEMGI 235

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  101 bits (253), Expect = 3e-23
 Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 19/169 (11%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
             D   K+G+  LH A        V         +     ++ ++ E   PLY++  +  
Sbjct: 203 RLDYANKQGNSHLHWAILINWED-VAMRFVEMGID-----VNMEDNEHTVPLYLSVRAAM 256

Query: 172 ALIVEEMLQH-----------MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL 220
            L+ +E+LQ             N  T         D    AA     EVL+ L  +    
Sbjct: 257 VLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE- 315

Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 269
           V+ +  + +        +    V    L   + + +    +       +
Sbjct: 316 VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV-RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
            D++    +H+A +KG+T  VR L+   G+     N+ G + L +A K G  +    L  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 386 AGAAHSKDHGKPP 398
            G  HS  HG+ P
Sbjct: 75  VGEVHSLWHGQKP 87

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  174 bits (445), Expect = 8e-51
 Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 12/238 (5%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKE 212
            ++Q   +PL+ AAE+GH  I   ++Q   N++T S    +       AA+  HLE +K 
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS---EDQRTPLMEAAENNHLEAVKY 62

Query: 213 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 272
           L+      V   D   ST LH AA +GH +VV +LL           + G T +  A   
Sbjct: 63  LIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 273 GHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG 330
            H+++VK L+SK  D +     D +    LH A      DI   L+     +    +  G
Sbjct: 122 KHVDLVKLLLSKGSDINI---RDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHG 177

Query: 331 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           ++ LHIA ++ R   V   LS    DV   NK GE+PL  A           + +A  
Sbjct: 178 DSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  163 bits (416), Expect = 1e-46
 Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 20/237 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH AA AG++  +  +L    AN     +   +++  TPL  AAE+ H   V+ +++   
Sbjct: 15  LHAAAEAGHV-DICHMLVQAGAN-----IDTCSEDQRTPLMEAAENNHLEAVKYLIKA-- 66

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
              A +  ++  G    H+AAK+GH EV++ LL      V   D    T +  A    H+
Sbjct: 67  --GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTA 299
           D+V  LL   S++  I  N     LH AA  G +++ + L++   D       +  G + 
Sbjct: 125 DLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH---AVNIHGDSP 180

Query: 300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 356
           LH+A +    D V+  +  D  V  L++ +G T L  A    +      +      D
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASLNSQVWSALQMSK-ALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (291), Expect = 2e-29
 Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 13/180 (7%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
             D     G   LHLAA+ G+   V++ L S    +    ++ ++  G TP+  A E  H
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHY-EVVQYLLSNGQMD----VNCQDDGGWTPMIWATEYKH 123

Query: 172 ALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCS 229
             +V+ +L       + I  R+       H AA  G +++ + LL    + +   ++   
Sbjct: 124 VDLVKLLLSK----GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGD 178

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
           + LH AA +   D V   L  DS++  +    G+T L  A+    +     +      + 
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  174 bits (444), Expect = 1e-50
 Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 14/246 (5%)

Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLE 208
           + ++ +++G+TPL++A   G+   V  ++         +   N       H+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 209 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN------NG 262
           V++ L+    +  M  D    TA H A        +  LL    + A    +      +G
Sbjct: 61  VVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALL---DSAAPGTLDLEARNYDG 116

Query: 263 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 322
            T LH A      E V+ L+ +         K G++ L  AV+  +  +V  L++   +V
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176

Query: 323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 382
              +   G++ALH A  +G   +VR L+   G D +  N   ++PL VA      ++   
Sbjct: 177 -NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRG 234

Query: 383 LKEAGA 388
                A
Sbjct: 235 KATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  163 bits (414), Expect = 2e-46
 Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 19/236 (8%)

Query: 124 LHLAARAGNLSRV---MEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
           LH+A   GNL  V   + + Q          L   N   +TPL++A  +    +V  ++ 
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVITTLPSVVRLLVT 67

Query: 181 HMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLG---EFPNLVMTTDLSCSTALHTA 235
                 AS  A  R+G  + H+A +      L+ LL         +   +    TALH A
Sbjct: 68  A----GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

Query: 236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK 295
                 + V  LLE  +++  +   +G++ L  A     L +V+ L+    +        
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYS 182

Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
           G +ALH A       +V  L+R       L++   +T L +A  +    I+R   +
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILRGKAT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  112 bits (282), Expect = 3e-28
 Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 11/164 (6%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
            HLA    +    +  L    A    DL   +N +G T L+VA  +     V+ +L+   
Sbjct: 83  AHLACEHRSP-TCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLER-- 138

Query: 184 LETASIPARNGYDSF---HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH 240
              A I A +          A +   L +++ LL    N V     S S+ALH+A+ +G 
Sbjct: 139 --GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGL 195

Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
           + +V  L+   ++   +   +  T L  A     +++++   ++
Sbjct: 196 LPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 32/134 (23%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319
            +G T LH A   G+L  V  LV+     G   D                          
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY------------------------ 42

Query: 320 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 379
                  +N   T LH+A+      +VR L++  G    +L++ G++   +A +  +   
Sbjct: 43  -------NNLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTC 94

Query: 380 FSLLKEAGAAHSKD 393
              L ++ A  + D
Sbjct: 95  LRALLDSAAPGTLD 108

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.0 bits (201), Expect = 2e-17
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 106 GGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLY 164
                 + ++    G   LH+A         +++L    A+ +A D      + G +PL 
Sbjct: 102 AAPGTLDLEARNYDGLTALHVAVNTECQ-ETVQLLLERGADIDAVD-----IKSGRSPLI 155

Query: 165 VAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELL--GEFPNL 220
            A E+    +V+ +LQH     A++ A+  +G  + H A+ +G L +++ L+  G   + 
Sbjct: 156 HAVENNSLSMVQLLLQH----GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS- 210

Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
               +    T L  A ++  ID++       ++
Sbjct: 211 --LKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  174 bits (444), Expect = 4e-50
 Identities = 59/285 (20%), Positives = 103/285 (36%), Gaps = 35/285 (12%)

Query: 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES 169
             +    G  G          G       +L +    +A            +P++ AA  
Sbjct: 23  SMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDAVS--------DWSPMHEAAIH 69

Query: 170 GHALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDL 226
           GH L +  ++     +N+ T      +     H A   GHL  +K LL      V     
Sbjct: 70  GHQLSLRNLISQGWAVNIIT-----ADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTA 123

Query: 227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNNGKTVLHSAARMGHLEVVKALVSK- 284
              T L  A   G  D VN LL    + A +   ++  + +H AAR GH+E V +L++  
Sbjct: 124 DWHTPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 180

Query: 285 -DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 343
            +            T L++A + Q    V +L+     V +      ++ LH  ++    
Sbjct: 181 GNIDHK---ISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTASE 235

Query: 344 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           ++   L+   G D  + N  G+ P+++            L+  GA
Sbjct: 236 ELACLLMD-FGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  164 bits (419), Expect = 1e-46
 Identities = 55/268 (20%), Positives = 97/268 (36%), Gaps = 27/268 (10%)

Query: 126 LAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNL 184
           + +   +       L    ++  + D   +   +G  P       G  L+          
Sbjct: 1   MGSSHHHHH-HSSGLVPRGSHMASMDG-KQGGMDGSKPAGPRDFPGIRLLSNP------- 51

Query: 185 ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
                 A + +   H AA  GH   L+ L+ +    V        + LH A   GH+  V
Sbjct: 52  --LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCV 108

Query: 245 NFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTAL 300
             LL    + A++     +  T L +A   G  + V  L+            +    + +
Sbjct: 109 KILL---KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP----ESDLASPI 161

Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 360
           H A +  + + V  LI    ++   + +   T L++A +  +   V+ LL   G DVN  
Sbjct: 162 HEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ- 218

Query: 361 NKAGESPLDVAEKLGNTELFSLLKEAGA 388
            K  +SPL    +  + EL  LL + GA
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGA 246

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  154 bits (391), Expect = 1e-42
 Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 26/240 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           +H AA  G+    +  L S         ++    +  +PL+ A   GH   V+ +L+H  
Sbjct: 63  MHEAAIHGHQL-SLRNLISQGWA-----VNIITADHVSPLHEACLGGHLSCVKILLKHG- 115

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
              A +       +     A   G  + +  LL    ++   +DL+  + +H AA +GH+
Sbjct: 116 ---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA--SPIHEAARRGHV 170

Query: 242 DVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQT 298
           + VN L+    N+  KI  ++  T L+ A        VK L+    D +      K   +
Sbjct: 171 ECVNSLIAYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLESGADVNQ----GKGQDS 224

Query: 299 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
            LH  V+  +E++   L+       + ++ +G   + +   +    + +  L  EG  + 
Sbjct: 225 PLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVPPES--PLAQLFLEREGASLP 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  173 bits (442), Expect = 7e-50
 Identities = 55/277 (19%), Positives = 94/277 (33%), Gaps = 25/277 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLA    +    ++ L    A    + L  +N  G+T L++AA  G A  VE++     
Sbjct: 13  LHLAVIHQHEP-FLDFLLGFSAG--HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-- 67

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPN-------------LVMTTDLSC 228
              A +      G+ + H+A +         LL   P+                T D S 
Sbjct: 68  --GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 288
           + A   +      +      +    L +    +G T LH A      E+V+ L       
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
                  G+T LH+AV+ Q   ++  L++            G T L  A+ +    + R 
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARL 243

Query: 349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
           L +  G           SP   +    +++      E
Sbjct: 244 LRA-HGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  135 bits (342), Expect = 7e-36
 Identities = 48/253 (18%), Positives = 82/253 (32%), Gaps = 52/253 (20%)

Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVL 210
           +     ++G+T L++A    H   ++ +L                   ++  +       
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGF------------SAGHEYLDLQ------- 41

Query: 211 KELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHS 268
                         +    TALH AA  G    V  L    +  A +  A   G T LH 
Sbjct: 42  --------------NDLGQTALHLAAILGEASTVEKLY---AAGAGVLVAERGGHTALHL 84

Query: 269 AARMGHLEVVKALVSKD------------PSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
           A R+        L+                 +   T         +  +   E+      
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 317 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK-AGESPLDVAEKLG 375
                 L+ E+  G+T LH+A+     ++VR L    G D+N      G +PL +A +  
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQ 203

Query: 376 NTELFSLLKEAGA 388
              +  LL +AGA
Sbjct: 204 AASVLELLLKAGA 216

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  119 bits (302), Expect = 2e-30
 Identities = 35/208 (16%), Positives = 58/208 (27%), Gaps = 20/208 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN---EAKDLLS-----KKNQEGETPLYVAAESGHALIV 175
           LHLA R         +L     +   +A D                P  V ++       
Sbjct: 82  LHLACRVRAH-TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140

Query: 176 EEMLQHMNLETASIPARNGYDS--FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALH 233
           E   +        + A N       HVA      E+++ L     +L         T LH
Sbjct: 141 EPRDEDWR---LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197

Query: 234 TAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFR 291
            A       V+  LL+  ++        G+T L SA    +  + + L +          
Sbjct: 198 LAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPEP---E 253

Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPD 319
                 +    +    + D   E    D
Sbjct: 254 DGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  116 bits (293), Expect = 3e-29
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 22/188 (11%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--D 285
           TALH A    H   ++FLL   +    +    + G+T LH AA +G    V+ L +    
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK------------LEDNKGNTA 333
                  ++ G TALH+A + +       L++P PS  +               +  +  
Sbjct: 71  VLV---AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127

Query: 334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AH 390
             +  +               + + + N  G +PL VA    + E+  LL++AGA     
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 391 SKDHGKPP 398
               G+ P
Sbjct: 188 EPTCGRTP 195

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (276), Expect = 6e-27
 Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 22/180 (12%)

Query: 113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHA 172
           +D           + ++    +      +          L  +N +G TPL+VA     A
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-----LEAENYDGHTPLHVAVIHKDA 171

Query: 173 LIVEEMLQHMNLETASIPARNGYDSF---HVAAKQGHLEVLKELL--GEFPNLVMTTDLS 227
            +V  +        A +            H+A +     VL+ LL  G  P         
Sbjct: 172 EMVRLLRDAG----ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT---ARMYG 224

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR--NNGKTVLHSAARMGHLEVVKALVSKD 285
             T L +A  + +  +   L    ++ A       +  +   S+      +        D
Sbjct: 225 GRTPLGSALLRPNPILARLLR---AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  175 bits (446), Expect = 1e-49
 Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 29/281 (10%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
                G+    +L  AAR+GN  ++M +L   + N         +    TPL++AA    
Sbjct: 16  KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVN-----CHASDGRKSTPLHLAAGYNR 70

Query: 172 ALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCST 230
             IV+ +LQH  ++       + G    H A   GH EV + LL      V   DL   T
Sbjct: 71  VRIVQLLLQHGADVHAKD---KGGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFT 126

Query: 231 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF 290
            LH AA++  ++V + LL   ++   +   +GK+ +  A      E +            
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFK------- 178

Query: 291 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG---RTQIVR 347
                G + L  A +  +   V + +  +    K +     TALH A+      R Q+  
Sbjct: 179 -----GHSLLQAAREA-DLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAE 231

Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            LL  +G +VN  NK   +PL VA +  + ++  +L + GA
Sbjct: 232 LLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  168 bits (428), Expect = 4e-47
 Identities = 55/253 (21%), Positives = 94/253 (37%), Gaps = 32/253 (12%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-M 182
           LH A   G+   V E+L    A      ++  +    TPL+ AA      +   +L H  
Sbjct: 95  LHNACSYGHY-EVTELLLKHGAC-----VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148

Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID 242
           +    +    +G  +  +A      E L                    +L  AA +  + 
Sbjct: 149 DPTLVN---CHGKSAVDMAPTPELRERLTYEFK-------------GHSLLQAAREADLA 192

Query: 243 VVNFLLEIDSNLAKIAR-NNGKTVLHSAARMGH---LEVVKALVSKDPSTGFRTDKKGQT 298
            V   L     +    +  + +T LH A    H    +V + L+ K  +   + +K   T
Sbjct: 193 KVKKTLA--LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK-NKDFMT 249

Query: 299 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
            LH+A +  + D++  L +    +    D+ G TALH A   G  Q  R LLS  G D +
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPS 307

Query: 359 SLNKAGESPLDVA 371
            ++  G +   + 
Sbjct: 308 IISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  159 bits (404), Expect = 8e-44
 Identities = 62/270 (22%), Positives = 114/270 (42%), Gaps = 32/270 (11%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLAA    + R++++L    A+     +  K++ G  PL+ A   GH  + E +L+H  
Sbjct: 62  LHLAAGYNRV-RIVQLLLQHGAD-----VHAKDKGGLVPLHNACSYGHYEVTELLLKH-- 113

Query: 184 LETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
              A + A     +   H AA +  +EV   LL    +     +    +A+  A      
Sbjct: 114 --GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELR 170

Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH 301
           + + +               G ++L  AAR   L  VK  ++ +    F+  +  +TALH
Sbjct: 171 ERLTYEF------------KGHSLLQ-AAREADLAKVKKTLALEIIN-FKQPQSHETALH 216

Query: 302 MAVK---GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
            AV     + + +   L+R   +V   ++    T LH+A ++    ++  L    G  +N
Sbjct: 217 CAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMN 274

Query: 359 SLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           +L+  G++ L  A   G+ +   LL   G+
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  141 bits (357), Expect = 3e-37
 Identities = 57/258 (22%), Positives = 96/258 (37%), Gaps = 35/258 (13%)

Query: 144 DANEAKDLLSK------KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS 197
               A DL           +  +  L  AA SG+   +  +L  +N    +  A +G  S
Sbjct: 3   FGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN---VNCHASDGRKS 59

Query: 198 --FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA 255
              H+AA    + +++ LL    + V   D      LH A + GH +V   LL+  + + 
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV- 117

Query: 256 KIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVL 313
                   T LH AA    +EV   L+S   DP+     +  G++A+ MA   +  + + 
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL---VNCHGKSAVDMAPTPELRERLT 174

Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA-- 371
                          KG++ L  A ++     V+  L    I      ++ E+ L  A  
Sbjct: 175 YEF------------KGHSLLQAA-READLAKVKKTL-ALEIINFKQPQSHETALHCAVA 220

Query: 372 -EKLGNTELFSLLKEAGA 388
                  ++  LL   GA
Sbjct: 221 SLHPKRKQVAELLLRKGA 238

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  129 bits (327), Expect = 3e-33
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 230 TALHTAAAQGHID-VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
             L  AA  G+ + ++  L  ++ N    +     T LH AA    + +V+ L+    D 
Sbjct: 26  DELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84

Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
                 DK G   LH A    + ++   L++    V    D    T LH A  K R ++ 
Sbjct: 85  HA---KDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVC 140

Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 390
             LLS  G D   +N  G+S +D+A      E  +   +  +  
Sbjct: 141 SLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (297), Expect = 4e-29
 Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 49/245 (20%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYV------------------ 165
           LH AA    +  V  +L S  A+      +  N  G++ + +                  
Sbjct: 128 LHEAASKNRV-EVCSLLLSHGAD-----PTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181

Query: 166 ---AAESGHALIVEEML-QHMNLETASIPARNGYDSFHVAAKQGH---LEVLKELLGEFP 218
              AA       V++ L   +         ++   + H A    H    +V + LL +  
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQP---QSHETALHCAVASLHPKRKQVAELLLRKGA 238

Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
           N V   +    T LH AA + H DV+  L +  + +     + G+T LH AA  GHL+  
Sbjct: 239 N-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTC 296

Query: 279 KALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 336
           + L+S   DPS       +G TA  M       + V +++     + +  D   +  L  
Sbjct: 297 RLLLSYGSDPS---IISLQGFTAAQMGN-----EAVQQILSESTPM-RTSDV--DYRLLE 345

Query: 337 AIKKG 341
           A K G
Sbjct: 346 ASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.4 bits (132), Expect = 4e-08
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 14/95 (14%)

Query: 294 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 353
           + G++AL +A       +               + K +  L  A      +++  L    
Sbjct: 2   EFGKSALDLADPSAKAVLT-------------GEYKKDELLEAARSGNEEKLMALLTP-L 47

Query: 354 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            ++ ++ +    +PL +A       +  LL + GA
Sbjct: 48  NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
             ++    G   LH AA AG+L     +L S  ++      S  + +G T   +  E   
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQ-TCRLLLSYGSD-----PSIISLQGFTAAQMGNE--- 322

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG 205
              V+++L      +  +   +       A+K G
Sbjct: 323 --AVQQILSE----STPMRTSDVDYRLLEASKAG 350

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  171 bits (435), Expect = 1e-49
 Identities = 55/232 (23%), Positives = 83/232 (35%), Gaps = 19/232 (8%)

Query: 159 GETPLYVAAESGHALIVEEML--QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL-- 214
              PL+ A        V+E+L  +   L       ++G    H +      E+   LL  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQK---DQDGRIPLHWSVSFQAHEITSFLLSK 58

Query: 215 GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI----ARNNGKTVLHSAA 270
            E  NL    D S  T  H A + G+++VV  L        K       N G T LH A 
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY---DRPLKPDLNKITNQGVTCLHLAV 115

Query: 271 RMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
                EV + L+            DK  Q  LH A    +  ++  L     S +  +D 
Sbjct: 116 GKKWFEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
           +G T L  A+ +G       L+   G + + ++  G    DVA      + F
Sbjct: 173 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  144 bits (367), Expect = 7e-40
 Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 4/188 (2%)

Query: 199 HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAK 256
           H A  +     ++ELL   P+L++  D      LH + +    ++ +FLL    + NL  
Sbjct: 7   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66

Query: 257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVLEL 315
              ++G T  H A  +G+LEVVK+L  +       +   +G T LH+AV  +  ++   L
Sbjct: 67  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 126

Query: 316 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
           I    SV +++D      LH A   G  +++  L  +    VN  +K G +PL  A   G
Sbjct: 127 IENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185

Query: 376 NTELFSLL 383
           + +   LL
Sbjct: 186 HGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  131 bits (332), Expect = 5e-35
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 8/167 (4%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK-- 284
           +  LH A  +     V  LL   S  + +     +G+  LH +      E+   L+SK  
Sbjct: 3   NYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 285 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV-LKLEDNKGNTALHIAIKKGRT 343
           + +     D  G T  H+A    N ++V  L        L    N+G T LH+A+ K   
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 344 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 390
           ++ + L+   G  V   +K  + PL  A  +G+ +L  LL   G + 
Sbjct: 121 EVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA 166

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  130 bits (329), Expect = 1e-34
 Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 19/199 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH +        +   L S   N    D     +  G TP ++A   G+  +V+ +    
Sbjct: 40  LHWSVSFQAH-EITSFLLSKMENVNLDD---YPDDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 183 NLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH 240
                 +      G    H+A  +   EV + L+    + V   D      LH AA+ G 
Sbjct: 96  --LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGS 152

Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK---DPSTGFRTDKKGQ 297
           + ++  L  +  +        G T L  A   GH +    LV K   +       D KG 
Sbjct: 153 LKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD---LVDNKGA 209

Query: 298 TALHMAVKGQNEDIVLELI 316
            A  +A+   NE +    +
Sbjct: 210 KAEDVAL---NEQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 77.1 bits (191), Expect = 4e-16
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 48/174 (27%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +    +G   LHLA        V + L    A+     +  K++  + PL        
Sbjct: 99  DLNKITNQGVTCLHLAVGKKWFE-VSQFLIENGAS-----VRIKDKFNQIPL-------- 144

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
                                      H AA  G L++++ L G   + V   D    T 
Sbjct: 145 ---------------------------HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177

Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIAR--NNGKTVLHSAARMGHLEVVKALVS 283
           L  A A+GH D    L  ++   A+     N G      A    + +V K  ++
Sbjct: 178 LFHALAEGHGDAAVLL--VEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            N  LH A  +     V+ LL  +   +   ++ G  PL  +      E+ S L     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  169 bits (430), Expect = 4e-48
 Identities = 46/274 (16%), Positives = 96/274 (35%), Gaps = 25/274 (9%)

Query: 126 LAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE 185
                    ++   L S D  +        +  G +  Y A    +  +V  +L      
Sbjct: 5   SRINTWKSKQLKSFLSSKDTFK-------ADVHGHSASYYAIADNNVRLVCTLLNA---- 53

Query: 186 TASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVN 245
            A           H AA     +++K LL    +     D   +TAL+ A   G++  V 
Sbjct: 54  GALKNLLENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVK 112

Query: 246 FLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK 305
             ++ +  L    +   KT  + A  +  + +V   +S+ PST         + +H+ +K
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIK 170

Query: 306 GQNEDIVLELIRPDPSVLKLEDNKGNT-ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG 364
             + D+++ L+    S     ++      + +AI     ++++ L     I++       
Sbjct: 171 NGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIY------ 222

Query: 365 ESPLDVAEKLGNTELFSLLKEAGA-AHSKDHGKP 397
            S       L + E+  ++ E      S  + K 
Sbjct: 223 -SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKD 255

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  161 bits (411), Expect = 2e-45
 Identities = 35/257 (13%), Positives = 94/257 (36%), Gaps = 33/257 (12%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
            + A    N+ R++  L +  A     +         E PL+ AA      IV+ +L   
Sbjct: 35  SYYAIADNNV-RLVCTLLNAGALKNLLE--------NEFPLHQAATLEDTKIVKILLFSG 85

Query: 183 NLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH 240
                     +  G  + + A   G+++ +K  + +   L+        T+ + A     
Sbjct: 86  ----LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141

Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQT 298
           + +V++ L    +          + +H   + GH++++  L+      +T    +     
Sbjct: 142 VSIVSYFLSEIPS--TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT---NNSLLFI 196

Query: 299 -ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 357
             + +A+  ++ +++  L + D ++         +A    +     +I + ++  + ++ 
Sbjct: 197 PDIKLAIDNKDIEMLQALFKYDINI--------YSANLENVLLDDAEIAKMIIE-KHVEY 247

Query: 358 NSLNKAGESPLDVAEKL 374
            S +   +  +    KL
Sbjct: 248 KSDSYTKDLDIVKNNKL 264

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  138 bits (351), Expect = 4e-37
 Identities = 44/257 (17%), Positives = 92/257 (35%), Gaps = 35/257 (13%)

Query: 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES 169
               + P       LH AA   +  ++++IL     +      S+ + +G T LY A +S
Sbjct: 59  LLENEFP-------LHQAATLEDT-KIVKILLFSGLD-----DSQFDDKGNTALYYAVDS 105

Query: 170 GHALIVEEMLQHMNLETASIPARNGYD---SFHVAAKQGHLEVLKELLGEFPNLVMTTDL 226
           G+   V+  ++        +          SF+ A     + ++   L E P+      L
Sbjct: 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL 161

Query: 227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT-VLHSAARMGHLEVVKALVSKD 285
              + +H     GH+D++  LL+  ++      +      +  A     +E+++AL   D
Sbjct: 162 L--SCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218

Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
            +          +A    V   + +I   +I       K +    +  +    K    +I
Sbjct: 219 IN--------IYSANLENVLLDDAEIAKMIIEKHVEY-KSDSYTKDLDIVKNNKL--DEI 267

Query: 346 VRCLLSIEGIDVNSLNK 362
           +     +  + VN + K
Sbjct: 268 ISKNKELRLMYVNCVKK 284

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  168 bits (429), Expect = 9e-48
 Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 32/299 (10%)

Query: 103 FIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETP 162
            +   ++ K K   G         A  +G+    +  L    A+     ++  N +G T 
Sbjct: 27  PVVKRKKTKVKFDDGA----VFLAACSSGDTE-EVLRLLERGAD-----INYANVDGLTA 76

Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELL--GEFP 218
           L+ A    +  +V+ ++++     A+I      G+   H AA  G+L++ + L+  G   
Sbjct: 77  LHQACIDDNVDMVKFLVEN----GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
             V   +    T L  A  +   +++   +            + +       R+   +  
Sbjct: 133 GAV---NSEGDTPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKEEERIMLRDAR 182

Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
           + L S   +   R  K G TALH+A      +++  LI+    V  ++D  G T LH A 
Sbjct: 183 QWLNSGHINDV-RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAA 240

Query: 339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS-KDHGK 396
             G+ +  R L+     D+ ++NK G++  DVA++     L  L K+    HS K   K
Sbjct: 241 HWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  148 bits (375), Expect = 3e-40
 Identities = 51/239 (21%), Positives = 90/239 (37%), Gaps = 24/239 (10%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR-NGYDSFHVAAKQGHLEVLKEL 213
            + + +    +    G    +E  +            + +    F  A   G  E +  L
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVK----RKKTKVKFDDGAVFLAACSSGDTEEVLRL 59

Query: 214 L--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271
           L  G   N     ++   TALH A    ++D+V FL+E  +N+     N G   LH+AA 
Sbjct: 60  LERGADIN---YANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS 115

Query: 272 MGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 329
            G+L++ + L+S+          + +G T L +A +   E+++   +             
Sbjct: 116 CGYLDIAEYLISQGAHVGAV---NSEGDTPLDIAEEEAMEELLQNEVNRQ-------GVD 165

Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              A     +       + L S   I+     K+G + L VA   G TE+  LL +A  
Sbjct: 166 IEAARKEEERIMLRDARQWLNS-GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  125 bits (316), Expect = 4e-32
 Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 13/170 (7%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
                    G    +   +       K   + +   V  +A   G  E V  L+ +  D 
Sbjct: 10  RNEQLKRWIGSETDLEPPV---VKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI 66

Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
           +     +  G TALH A    N D+V  L+    ++    DN+G   LH A   G   I 
Sbjct: 67  NY---ANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIA 122

Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA--HSKDH 394
             L+S +G  V ++N  G++PLD+AE+    EL             +   
Sbjct: 123 EYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.1 bits (222), Expect = 1e-19
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 4/133 (3%)

Query: 256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315
           K+A    K        +G    ++  V K   T  +           A    + + VL L
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLRL 59

Query: 316 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
           +     +    +  G TALH A       +V+ L+   G ++N  +  G  PL  A   G
Sbjct: 60  LERGADI-NYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCG 117

Query: 376 NTELFSLLKEAGA 388
             ++   L   GA
Sbjct: 118 YLDIAEYLISQGA 130

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 382
           +K+ D K      +    G    +   +  +          G   L      G+TE    
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVV-KRKKTKVKFDDGAVFLAACSS-GDTEEVLR 58

Query: 383 LKEAGA 388
           L E GA
Sbjct: 59  LLERGA 64

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  164 bits (419), Expect = 5e-47
 Identities = 60/261 (22%), Positives = 106/261 (40%), Gaps = 32/261 (12%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMN-LET--------ASIPA---RNGYDSFHVA 201
            +  +G TPL +A+ SG  L      +  +            AS+     R G  + H+A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 202 AKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE---IDSNLAK 256
           A+    +  K LL      N     D    T LH A +     V   L+     D +   
Sbjct: 65  ARYSRSDAAKRLLEASADAN---IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD--- 118

Query: 257 IARNN-GKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVL 313
            AR + G T L  AAR+    +++ L++   D +     D  G++ALH A    N D  +
Sbjct: 119 -ARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---VDDLGKSALHWAAAVNNVDAAV 174

Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 373
            L++   +   +++N+  T L +A ++G  +  + LL     + +  +     P D+A++
Sbjct: 175 VLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQE 232

Query: 374 LGNTELFSLLKEAGAAHSKDH 394
             + ++  LL      H   H
Sbjct: 233 RMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  154 bits (391), Expect = 5e-43
 Identities = 44/251 (17%), Positives = 91/251 (36%), Gaps = 24/251 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDANE-AKDLLSK-------KNQEGETPLYVAAESGHALIV 175
           L +A+ +G         +  DA     D + +        ++ GET L++AA    +   
Sbjct: 14  LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAA 73

Query: 176 EEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL 232
           + +L+     N     I    G    H A       V + L+      +       +T L
Sbjct: 74  KRLLEASADAN-----IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128

Query: 233 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGF 290
             AA      ++  L+   +++     + GK+ LH AA + +++    L+    +     
Sbjct: 129 ILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-- 185

Query: 291 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
             + + +T L +A +  + +    L+    +   + D+       IA ++    IVR L 
Sbjct: 186 -QNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLD 243

Query: 351 SIEGIDVNSLN 361
             E    +  +
Sbjct: 244 L-EHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  109 bits (276), Expect = 3e-27
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 17/177 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +     G   LH A  A     V +IL     N A DL   +  +G TPL +AA    
Sbjct: 82  DANIQDNMGRTPLHAAVSADAQG-VFQILIR---NRATDL-DARMHDGTTPLILAARLAV 136

Query: 172 ALIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLS 227
             ++E+++       A + A    G  + H AA   +++    LL  G   +     +  
Sbjct: 137 EGMLEDLINSH----ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNR 189

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
             T L  AA +G  +    LL+  +N   I  +  +     A    H ++V+ L  +
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDLE 245

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  157 bits (399), Expect = 2e-44
 Identities = 48/230 (20%), Positives = 83/230 (36%), Gaps = 22/230 (9%)

Query: 115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALI 174
            P K G +++  A          E+            +       +T  +     G   +
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDM------SDTNWWKGTSKGRTGL 60

Query: 175 VEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
           +               A +  +  H AAK+G+L  L+E L      V   D + STAL+ 
Sbjct: 61  IPSNYVAEQ-------AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYW 112

Query: 235 AAAQGHIDVVNFLLE---IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 291
           A   GH D+V  L     I+ N        G T LH+AA  G+ ++V+ L++K   T  R
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELN---QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169

Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
            + + + A  MA       ++ +    D     L + +       +  + 
Sbjct: 170 -NIEKKLAFDMATNAACASLLKKKQGTDAVR-TLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  155 bits (393), Expect = 9e-44
 Identities = 38/226 (16%), Positives = 74/226 (32%), Gaps = 15/226 (6%)

Query: 152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEV 209
             K  + G+  ++ A  +      +E+          I         ++     +G   +
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIE----EGDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 210 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA 269
           +        N V     S    LH AA +G++  +   L+    +       G T L+ A
Sbjct: 61  IPS------NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWA 113

Query: 270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 329
              GH ++V+ L ++      + +K G TALH A      DIV  L+        L + +
Sbjct: 114 CHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIE 172

Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 375
              A  +A       +++             N       + ++   
Sbjct: 173 KKLAFDMATNAACASLLKKKQG-TDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  155 bits (393), Expect = 1e-43
 Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 14/209 (6%)

Query: 190 PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
           P + G      A          EL  E  +++  TD+S  T      ++G   ++     
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLIP---- 62

Query: 250 IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 307
             SN       +    LH AA+ G+L  ++  +      +     DK G TAL+ A  G 
Sbjct: 63  --SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG---LDKAGSTALYWACHGG 117

Query: 308 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 367
           ++DIV  L       L  ++  G+TALH A  KG   IV+ LL+ +G   +  N   +  
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLA 176

Query: 368 LDVAEKLGNTELFSLLKEAGAA-HSKDHG 395
            D+A       L    +   A     +  
Sbjct: 177 FDMATNAACASLLKKKQGTDAVRTLSNAE 205

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 31/162 (19%), Positives = 51/162 (31%), Gaps = 37/162 (22%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKD-------------------- 150
                 +  D  LH AA+ GNLS  +             D                    
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLS-WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123

Query: 151 -LLSK-------KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHV 200
            L ++       +N+ G+T L+ AA  G+A IV+ +L       A    RN     +F +
Sbjct: 124 MLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK----GARTDLRNIEKKLAFDM 179

Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID 242
           A       +LK+  G        ++         +  + H  
Sbjct: 180 ATNAACASLLKKKQGTDAV-RTLSNAEDYLDDEDSDLEHHHH 220

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  157 bits (400), Expect = 2e-44
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 14/235 (5%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLK 211
           +  ++G++ L++A       +  E+++ +  + A +  +N       H+A      E+ +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 212 ELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-----NNGKT 264
            LL  G  P L    D   +T LH A  QG +  V  L +  +     +       NG T
Sbjct: 63  ALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 265 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 324
            LH A+  G+L +V+ LVS       +    G+TALH+AV  QN D+V  L++    V  
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-N 178

Query: 325 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 379
               +G +   +   +  T+I + L     ++   +    E       +   TE 
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  149 bits (378), Expect = 2e-41
 Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 24/247 (9%)

Query: 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEI---LQSCDANEAKDLLSKKNQEGETPLYVA 166
           K+      + GD  LHLA      +  ME+   ++   A      L+ +N   +TPL++A
Sbjct: 1   KQQLT---EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-----LNFQNNLQQTPLHLA 52

Query: 167 AESGHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTT 224
             +    I E +L                G    H+A +QG L  +  L        + +
Sbjct: 53  VITNQPEIAEALLGAG----CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 225 DLSCS-----TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 279
            L  +     T LH A+  G++ +V  L+ + +++      NG+T LH A  + + ++V 
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 168

Query: 280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 339
            L+        R   +G +   +     +  I  +L +     L+    +         +
Sbjct: 169 LLLKCGADVN-RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-MLPESEDEESYDTE 226

Query: 340 KGRTQIV 346
              T+  
Sbjct: 227 SEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 18/153 (11%)

Query: 260 NNGKTVLHSAARMGH----LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315
            +G + LH A         +EV++ +        F+ +   QT LH+AV     +I   L
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEAL 64

Query: 316 IR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS-----IEGIDVNSLNKAGESPL 368
           +    DP    L D +GNT LH+A ++G    V  L            + + N  G + L
Sbjct: 65  LGAGCDPE---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 369 DVAEKLGNTELFSLLKEAGA---AHSKDHGKPP 398
            +A   G   +  LL   GA   A    +G+  
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  152 bits (386), Expect = 3e-43
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK 256
           S H  A QG L+ LKE L +  NLV   D    T L  A+A G I+ V FLLE  ++   
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-H 63

Query: 257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
           I     ++ L  A+  G+ ++V  L+ +D       D  G T L  AV+G +   V  L+
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALL 122

Query: 317 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 367
                +   E + G T + +A+  G  ++ + + +   + +   N     P
Sbjct: 123 ARGADL-TTEADSGYTPMDLAVALGYRKVQQVIEN-HILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  143 bits (363), Expect = 5e-40
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
           S ++H  AAQG +D +   L    NL       G T L  A+  G +E V+ L+    DP
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
                  K+ ++AL +A  G   DIV  L+  D  +  + D  G T L  A++    + V
Sbjct: 63  HIL---AKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCV 118

Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
             LL+  G D+ +   +G +P+D+A  LG  ++  +++    
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  106 bits (268), Expect = 5e-27
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
               +H  A  G L+ +K  + K  +   + D++G T L  A      + V  L+     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
              +   +  +AL +A   G T IV  LL    +D+N  +  G +PL  A +  + +   
Sbjct: 62  P-HILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 382 LLKEAGA 388
            L   GA
Sbjct: 120 ALLARGA 126

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 43/153 (28%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +     K  +  L LA+  G    ++ +L   D +     ++  +  G TPL        
Sbjct: 61  DPHILAKERESALSLASTGGYTD-IVGLLLERDVD-----INIYDWNGGTPL-------- 106

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA 231
                                        A +  H++ ++ LL    + + T   S  T 
Sbjct: 107 ---------------------------LYAVRGNHVKCVEALLARGAD-LTTEADSGYTP 138

Query: 232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT 264
           +  A A G+  V   +      L   +      
Sbjct: 139 MDLAVALGYRKVQQVIENHILKL-FQSNLVPAD 170

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  153 bits (389), Expect = 5e-43
 Identities = 52/268 (19%), Positives = 104/268 (38%), Gaps = 48/268 (17%)

Query: 131 GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP 190
           G+   V+       A+    L ++ ++ GET L++AA    +   + +L+     +A   
Sbjct: 1   GDAPAVISDFIYQGAS----LHNQTDRTGETALHLAARYSRSDAAKRLLEA----SADAN 52

Query: 191 ARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
            ++                     G              T LH A +     V   L+  
Sbjct: 53  IQDNM-------------------GR-------------TPLHAAVSADAQGVFQILIRN 80

Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQN 308
            +       ++G T L  AAR+    +++ L++   D +     D  G++ALH A    N
Sbjct: 81  RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---VDDLGKSALHWAAAVNN 137

Query: 309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
            D  + L++   +   +++N+  T L +A ++G  +  + LL     + +  +     P 
Sbjct: 138 VDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPR 195

Query: 369 DVAEKLGNTELFSLLKEAGAAHSKD-HG 395
           D+A++  + ++  LL E     S   HG
Sbjct: 196 DIAQERMHHDIVRLLDEYNLVRSPQLHG 223

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  104 bits (262), Expect = 1e-25
 Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 25/182 (13%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A  A     V +IL     N A DL   +  +G TPL +AA      ++E+++    
Sbjct: 62  LHAAVSADAQG-VFQILIR---NRATDL-DARMHDGTTPLILAARLAVEGMLEDLINS-- 114

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQG 239
              A + A +  G  + H AA   +++    LL  G   +     +    T L  AA +G
Sbjct: 115 --HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD---MQNNREETPLFLAAREG 169

Query: 240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
             +    LL+  +N   I  +  +     A    H ++V+ L           +      
Sbjct: 170 SYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEY--------NLVRSPQ 220

Query: 300 LH 301
           LH
Sbjct: 221 LH 222

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  141 bits (359), Expect = 1e-39
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 11/170 (6%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
           S ++H  AAQG +  +   +E ++ +       G T L  AA  G + VV+ L+    DP
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
                  K  ++AL +A      DIV  L+     V    D  G T L  A+     + V
Sbjct: 63  QL---LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCV 118

Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKD 393
           + LL   G D      +G + +D+A  LG   +  +++        + K+
Sbjct: 119 KMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  139 bits (352), Expect = 1e-38
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 9/172 (5%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
               S H  A QG +  L   + +    +  TD    T L  AAA G I VV FLL+  +
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNED 310
           +  ++     ++ L  A   G+ ++VK L+    D +     D  G T L  AV G +  
Sbjct: 61  DP-QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE---YDWNGGTPLLYAVHGNHVK 116

Query: 311 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 362
            V  L+        +E + G  ++ +A+  G   + + + S   + +    K
Sbjct: 117 CVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES-HLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  120 bits (305), Expect = 4e-32
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 12/162 (7%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-M 182
           +H  A  G +   +      +       ++  ++EG TPL  AA  G   +VE +LQ+  
Sbjct: 7   VHQLAAQGEM-LYLATRIEQENV-----INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID 242
           + +      +    +  +A  +G+ +++K LL    + V   D +  T L  A    H+ 
Sbjct: 61  DPQLLG---KGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVK 116

Query: 243 VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
            V  LLE  ++   I  ++G   +  A  +G+  V + + S 
Sbjct: 117 CVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  106 bits (267), Expect = 6e-27
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 11/132 (8%)

Query: 261 NGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR- 317
                +H  A  G +  +   + +    +    TD++G T L  A       +V  L++ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINH---TDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 318 -PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 376
             DP +         +AL +A  KG T IV+ LL   G+DVN  +  G +PL  A    +
Sbjct: 59  GADPQL---LGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNH 114

Query: 377 TELFSLLKEAGA 388
            +   +L E+GA
Sbjct: 115 VKCVKMLLESGA 126

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 64.7 bits (159), Expect = 2e-12
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           +    GK  +  L LA   G    ++++L  C  +     +++ +  G TPL  A    H
Sbjct: 61  DPQLLGKGRESALSLACSKGYTD-IVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNH 114

Query: 172 ALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELL 214
              V+ +L+      +ET      +GY+S  +A   G+  V + + 
Sbjct: 115 VKCVKMLLESGADPTIET-----DSGYNSMDLAVALGYRSVQQVIE 155

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  144 bits (365), Expect = 2e-39
 Identities = 44/225 (19%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 190 PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
           P   G  S     +    +   E +      V    L     L  ++ +G  D+V  ++ 
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMR-VKFNPLPL-ALLLDSSLEGEFDLVQRIIY 58

Query: 250 IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQ 307
              +   +  + G T LH+A   GH E+VK LV    + +     D  G T LH A    
Sbjct: 59  EVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCN 114

Query: 308 NEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE 365
           N  +   L+        +   D +        +++G TQ  + L       +  +NK   
Sbjct: 115 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG-VQEKMGIMNKGVI 173

Query: 366 SPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSD 410
             L   E   + E   L  + G   +  H +     +     ++D
Sbjct: 174 YALWDYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  123 bits (311), Expect = 4e-32
 Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 19/223 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L    R     +      +           K N      L  ++  G   +V+ ++  + 
Sbjct: 9   LPPGKRTNLR-KTGSERIAHGMR------VKFNPLPLALLLDSSLEGEFDLVQRIIYEV- 60

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
                    N  G  + H A   GH E++K L+    N V   D    T LH AA+  ++
Sbjct: 61  ---DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNV 116

Query: 242 DVVNFLLEIDSNLAKIARNNGKTV--LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 299
            V  FL+E  + +  +  ++ +T          G+ +  + L       G   +K    A
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG-IMNKGVIYA 175

Query: 300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 342
           L         D  L +   D   +   +++       A    +
Sbjct: 176 LWDY--EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  110 bits (276), Expect = 2e-27
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 15/189 (7%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-M 182
           L  ++  G    +++ +     +      S  N EG T L+ A  +GH  IV+ ++Q  +
Sbjct: 41  LLDSSLEGEFD-LVQRIIYEVDD-----PSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94

Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGH 240
           N+  A     +G+   H AA   +++V K L+  G     +  +D+  +        +G+
Sbjct: 95  NVNAAD---SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY 151

Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
                FL  +   +  I        L         E+   +   D  T    + + +   
Sbjct: 152 TQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEIEW 208

Query: 301 HMAVKGQNE 309
             A     E
Sbjct: 209 WWARLNDKE 217

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  140 bits (355), Expect = 1e-38
 Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 21/208 (10%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKE 212
           K  E    L  A +     + E +       T  +   +  G    ++A     +E+ K 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDT----TYQVDEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 213 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 272
           L+    + +   +    +    A AQG  +++ ++L+  +         G   L  AA  
Sbjct: 58  LIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116

Query: 273 GHLEVVKALVSKDPSTGF----RTDKKGQTALHMAVKGQN-----EDIVLELIRPDPSVL 323
           GH++ VK L+      G       +  G TAL  AV  +      +DIV  L+       
Sbjct: 117 GHIDNVKLLLED----GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ- 171

Query: 324 KLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            ++DN G TA+  A +KG T+I + L  
Sbjct: 172 SIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  134 bits (339), Expect = 2e-36
 Identities = 37/198 (18%), Positives = 80/198 (40%), Gaps = 8/198 (4%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
                   A ++   +V + L       V   D   +T L+ A     I++   L++  +
Sbjct: 5   EVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA 63

Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
           ++  +  +   +    A   G  E++  ++        + ++ G  AL  A +  + D V
Sbjct: 64  DI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 313 LELIRPDPSVLKLEDNKGNTALHIAI-----KKGRTQIVRCLLSIEGIDVNSLNKAGESP 367
             L+      +  +++ G TAL  A+      +    IV+ L+   G D +  + +G + 
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSGRTA 181

Query: 368 LDVAEKLGNTELFSLLKE 385
           +D A + G TE+  +L +
Sbjct: 182 MDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  122 bits (309), Expect = 3e-32
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
             L  A  +    V   L +    +       G T L+ A     +E+ KAL+ +  D +
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                +    +    A      +I+  +++     L   +  G  AL  A +KG    V+
Sbjct: 67  ---LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKL-----GNTELFSLLKEAGA 388
            LL     D++  N  G + L  A  L        ++  LL E GA
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  102 bits (256), Expect = 4e-25
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 6/132 (4%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
                +L +A +    +V + L             D +G T L++AV   + +I   LI 
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVDE---VDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
               +  L+++  ++    A  +GRT+I+  +L     D+N  N+ G + L  A + G+ 
Sbjct: 61  RGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 378 ELFSLLKEAGAA 389
           +   LL E G  
Sbjct: 120 DNVKLLLEDGRE 131

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.2 bits (142), Expect = 6e-10
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
             +    L  A ++   ++   L       V+ ++  G +PL++A    + E+   L + 
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 387 GA 388
           GA
Sbjct: 62  GA 63

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  139 bits (353), Expect = 1e-38
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 11/163 (6%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
             + T   +G+   V   L+   N      ++G + LH A R G   VV+ L+ +    +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQI 345
                ++   T LH+A    + DIV +L++   D +     +  GN  LH A   G+ Q+
Sbjct: 67  ---VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYACFWGQDQV 120

Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              L++  G  V+  NK GE P+D A+      L    ++ G 
Sbjct: 121 AEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  137 bits (347), Expect = 9e-38
 Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 18/189 (9%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
              D      ++G+   ++  L    N +   D    + LH A  +G   VV  L+    
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI---M 60

Query: 253 NLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQN 308
             A+I        T LH AA  GH ++V+ L+    D +     ++ G   LH A     
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYACFWGQ 117

Query: 309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
           + +  +L+     V  + +  G   +  A    R  +        G ++N        P 
Sbjct: 118 DQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK-MGQNLN------RIPY 169

Query: 369 DVAEKLGNT 377
                 G T
Sbjct: 170 KDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  126 bits (318), Expect = 8e-34
 Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 23/195 (11%)

Query: 156 NQEGETPLYVAAESGHALIVEEMLQH--MNLETASIPARNGYDSFHVAAKQGHLEVLKEL 213
           + E    ++     G+A+ V   L +   +L        +G+   H A ++G   V++ L
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG---DDHGFSPLHWACREGRSAVVEML 58

Query: 214 LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNN-GKTVLHSAAR 271
           +      +   +    T LH AA+ GH D+V  LL      A I A N  G   LH A  
Sbjct: 59  IMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114

Query: 272 MGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 329
            G  +V + LV+     S     +K G+  +  A     E +            K+  N 
Sbjct: 115 WGQDQVAEDLVANGALVSI---CNKYGEMPVDKAKAPLRELLRERAE-------KMGQNL 164

Query: 330 GNTALHIAIKKGRTQ 344
                     KG T+
Sbjct: 165 NRIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  101 bits (255), Expect = 3e-25
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319
                 + +  R G+   V+  +    +   + D  G + LH A +     +V  LI   
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 320 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 379
             +  + +   +T LH+A   G   IV+ LL     D+N++N+ G  PL  A   G  ++
Sbjct: 63  ARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQV 120

Query: 380 FSLLKEAGA 388
              L   GA
Sbjct: 121 AEDLVANGA 129

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 89.4 bits (223), Expect = 8e-21
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A R G  + V+E+L    A      ++  N+  +TPL++AA  GH  IV+++LQ+  
Sbjct: 43  LHWACREGRSA-VVEMLIMRGAR-----INVMNRGDDTPLHLAASHGHRDIVQKLLQY-- 94

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
              A I A N  G    H A   G  +V ++L+      V   +      +  A A    
Sbjct: 95  --KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRE 151

Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275
            +     ++  NL        +         G  
Sbjct: 152 LLRERAEKMGQNL-------NRIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 15/62 (24%), Positives = 25/62 (40%)

Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
             +    +    ++G    VR  L     D+N  +  G SPL  A + G + +  +L   
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 387 GA 388
           GA
Sbjct: 62  GA 63

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 57.4 bits (140), Expect = 7e-10
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 14/96 (14%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++  + G++ LH A   G    V E L +  A      +S  N+ GE P+  A     
Sbjct: 97  DINAVNEHGNVPLHYACFWGQDQ-VAEDLVANGAL-----VSICNKYGEMPVDKAKAPLR 150

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL 207
            L+ E   +       ++        +     +G  
Sbjct: 151 ELLRERAEKM----GQNLNRIP----YKDTFWKGTT 178

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  131 bits (331), Expect = 6e-35
 Identities = 52/221 (23%), Positives = 81/221 (36%), Gaps = 38/221 (17%)

Query: 199 HVAAKQGHLEVLKELL---GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA 255
            +AAK+  ++ L +LL   G   +          TALH AA   +++    L+E    L 
Sbjct: 8   LLAAKENDVQALSKLLKFEGCEVH---QRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 256 KIARN----NGKTVLHSAARMGHLEVVKALVS-------KD-----PSTGFRTDKKGQTA 299
                     G+T LH A    ++ +V+AL++       +                G+  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 300 LHMAVKGQNEDIVLELI--RPDPSVLKLEDNKGNTALHIAIKKGRTQIVR----CLLSIE 353
           L  A    +E+IV  LI    D      +D+ GNT LHI I +            LLS  
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRA---QDSLGNTVLHILILQPNKTFACQMYNLLLSY- 180

Query: 354 GIDVN------SLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
               +        N  G +P  +A   GN  +F  L +   
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  124 bits (314), Expect = 1e-32
 Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKI-AR-NNGKTVLHSAARMGHLEVVKALVSKDPS 287
           + L  AA +  +  ++ LL+      ++  R   G+T LH AA   +LE    L+   P 
Sbjct: 5   SPLLLAAKENDVQALSKLLK--FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 288 TGFRT----DKKGQTALHMAVKGQNEDIVLELI------------RPDPSVLKLEDNKGN 331
             F        +GQTALH+AV  QN ++V  L+                         G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 332 TALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 390
             L  A   G  +IVR L+   G D+ + +  G + L +     N      +     ++
Sbjct: 123 HPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  100 bits (251), Expect = 4e-24
 Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 26/183 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH-- 181
           LH+AA   NL     +L         + ++ +  EG+T L++A  + +  +V  +L    
Sbjct: 41  LHIAALYDNL-EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

Query: 182 ---------MNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCST 230
                    +           G      AA  G  E+++ L+  G         D   +T
Sbjct: 100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR---AQDSLGNT 156

Query: 231 ALHTAAAQGHIDVV----NFLLEIDSN-----LAKIARNNGKTVLHSAARMGHLEVVKAL 281
            LH    Q +        N LL  D       L  +  N G T    A   G++ + + L
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

Query: 282 VSK 284
           + K
Sbjct: 217 MQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.9 bits (120), Expect = 7e-07
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
             + L +A K+   Q +  LL  EG +V+     GE+ L +A    N E   +L EA  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  138 bits (349), Expect = 3e-37
 Identities = 48/248 (19%), Positives = 77/248 (31%), Gaps = 38/248 (15%)

Query: 148 AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL 207
            K + S+   EG     +  + GH+              A + +      +  AA++   
Sbjct: 4   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVS-EYETPWWTAARKADE 58

Query: 208 EVLKELL-GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 266
           + L +LL     +     D +  TAL   A  G    V  L E  ++L       G T L
Sbjct: 59  QALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 115

Query: 267 HSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELI-------- 316
           H AA     EVV+ALV    D       D++G TAL +A +          +        
Sbjct: 116 HMAAGYVRPEVVEALVELGADIE---VEDERGLTALELAREILKTTPKGNPMQFGRRIGL 172

Query: 317 -------------RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKA 363
                          +   +  +  KG    ++   K               +     K 
Sbjct: 173 EKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGV-HVAEDV--AKD 229

Query: 364 GESPLDVA 371
            E  L+ A
Sbjct: 230 YEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  122 bits (308), Expect = 1e-31
 Identities = 37/249 (14%), Positives = 77/249 (30%), Gaps = 41/249 (16%)

Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
              G ++  +  + G+            A+           E ETP + AA       + 
Sbjct: 12  AGEGAMEYLIEWKDGHSP-SWVPSSYIAAD--------VVSEYETPWWTAARKADEQALS 62

Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
           ++L+  +++       NG  +    A  G  + ++ L     +L         TALH AA
Sbjct: 63  QLLEDRDVDAVD---ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119

Query: 237 AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV------------KALVSK 284
                +VV  L+E+ +++ ++    G T L  A  +                  + +++ 
Sbjct: 120 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINV 178

Query: 285 DPSTGFRT---------DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTA 333
                F             KG+   ++       D          +      +D +    
Sbjct: 179 LEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA---KDYE--DG 233

Query: 334 LHIAIKKGR 342
           L  A+ +  
Sbjct: 234 LEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 95.0 bits (237), Expect = 3e-22
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 10/142 (7%)

Query: 249 EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 308
           E++  +       G        + GH                    + +T    A +  +
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVSEYETPWWTAARKAD 57

Query: 309 EDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN-KAGES 366
           E  + +L+   D       D  G TAL      G  + VR L    G D++  + + G +
Sbjct: 58  EQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLT 113

Query: 367 PLDVAEKLGNTELFSLLKEAGA 388
            L +A      E+   L E GA
Sbjct: 114 ALHMAAGYVRPEVVEALVELGA 135

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 90.7 bits (226), Expect = 1e-20
 Identities = 29/205 (14%), Positives = 60/205 (29%), Gaps = 45/205 (21%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESG 170
           + D+  + G   L   A  G+    + +L    A+ + +D      + G T L++AA   
Sbjct: 69  DVDAVDENGRTALLFVAGLGSDK-CVRLLAEAGADLDHRD-----MRGGLTALHMAAGYV 122

Query: 171 HALIVEEMLQH---MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLS 227
              +VE +++    + +E        G  +  +A +          +     +     L 
Sbjct: 123 RPEVVEALVELGADIEVED-----ERGLTALELAREILKTTPKGNPMQFGRRI----GLE 173

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS---- 283
               +       + +V   + +         R  GK V +        +           
Sbjct: 174 KVINVLEGQVFEYAEVDEIVEK---------RGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

Query: 284 ---KDPSTGFRTDKKGQTALHMAVK 305
              KD           +  L  AV 
Sbjct: 225 DVAKD----------YEDGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 25/153 (16%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH+AA       V+E L    A+ E +D      + G T L +A E          +Q  
Sbjct: 115 LHMAAGYVRPE-VVEALVELGADIEVED------ERGLTALELAREILKTTPKGNPMQF- 166

Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID 242
                         +        + EV + +                   +    +   D
Sbjct: 167 ----GRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKG---------KDVEYLVRWKDGGD 213

Query: 243 VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 275
                     ++A+    + +  L  A     +
Sbjct: 214 CEWVKG---VHVAEDVAKDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 24/88 (27%)

Query: 296 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 355
           G+    +  +                       +G     I  K G +        I   
Sbjct: 1   GEVNKIIGSRT--------------------AGEGAMEYLIEWKDGHSPSWVPSSYI-AA 39

Query: 356 DVNSLNKAGESPLDVAEKLGNTELFSLL 383
           DV       E+P   A +  + +  S L
Sbjct: 40  DV---VSEYETPWWTAARKADEQALSQL 64

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  136 bits (345), Expect = 1e-36
 Identities = 50/258 (19%), Positives = 86/258 (33%), Gaps = 47/258 (18%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAK--DLLSKKNQEGETPLYVAA---ESGHALIVEEM 178
           L      G    +  +L+    N     D    +   G+T L  A    + G    +  +
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 179 LQH-------MNLETASIPARN--GYDSFHVAAKQGHLEVLKELL------------GEF 217
           LQ          L  A        G+ + H+A ++  L+ +K L+              F
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHL 275
                T        L  AA     DVV +LLE     A +    + G TVLH+   +   
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD- 184

Query: 276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH 335
                            +    +AL + +      +   L        ++ +++G T L 
Sbjct: 185 -----------------NSPENSALVIHMYDGLLQMGARLCPTVQLE-EISNHQGLTPLK 226

Query: 336 IAIKKGRTQIVRCLLSIE 353
           +A K+G+ +I R +L  E
Sbjct: 227 LAAKEGKIEIFRHILQRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  117 bits (296), Expect = 5e-30
 Identities = 54/253 (21%), Positives = 76/253 (30%), Gaps = 55/253 (21%)

Query: 196 DSFHVAAKQGHLEVLKELLGEFPNL-------VMTTDLSCSTALHTAAA---QGHIDVVN 245
           D       +G  E L  LL               T   +  T L  A      G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 246 FLLEIDSNLAKIAR----------NNGKTVLHSAARMGHLEVVKALVSK----------- 284
            LL+ID +                  G + LH A     L+ VK LV             
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 285 -DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALH------ 335
                       G+  L +A   +  D+V  L+     P+ L+  D+ GNT LH      
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 336 ----------IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
                     I +  G  Q+   L           N  G +PL +A K G  E+F  + +
Sbjct: 184 DNSPENSALVIHMYDGLLQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242

Query: 386 AGA----AHSKDH 394
                  AH   H
Sbjct: 243 REFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (257), Expect = 9e-25
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 39/194 (20%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKD-------LLSKKNQEGETPLYVAAES 169
            +G   LH+A    +L + +++L    A+   +                GE PL +AA +
Sbjct: 88  YQGHSALHIAIEKRSL-QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

Query: 170 GHALIVEEMLQHMNLETASIPA--RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLS 227
               +V  +L++ + + AS+ A    G    H                         +  
Sbjct: 147 KQWDVVTYLLENPH-QPASLEATDSLGNTVLHALVMIAD------------------NSP 187

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 287
            ++AL      G + +   L        +I+ + G T L  AA+ G +E+ + ++ +   
Sbjct: 188 ENSALVIHMYDGLLQMGARLCPTVQLE-EISNHQGLTPLKLAAKEGKIEIFRHILQR--- 243

Query: 288 TGFRTDKKGQTALH 301
                +  G  A H
Sbjct: 244 -----EFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 80.6 bits (199), Expect = 4e-17
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 34/160 (21%)

Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTG-------FRTDKKGQTALHMAV---KGQNEDI 311
            +  L S    G  E +  L+              +     G+T L  AV   +      
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 312 VLELIRPDPSVLKL----------EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN--- 358
           ++ L++ D                E  +G++ALHIAI+K   Q V+ L+   G DV+   
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE-NGADVHLRA 120

Query: 359 ----------SLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
                     +    GE PL +A      ++ + L E   
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.1 bits (190), Expect = 5e-16
 Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 23/148 (15%)

Query: 106 GGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYV 165
           G   +K++ +    G+L L LAA       V+  L       A   L   +  G T L+ 
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWD-VVTYLLENPHQPAS--LEATDSLGNTVLHA 178

Query: 166 AAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTD 225
                                          +  +    G L++   L      L   ++
Sbjct: 179 LVMIAD-------------------NSPENSALVIHMYDGLLQMGARLC-PTVQLEEISN 218

Query: 226 LSCSTALHTAAAQGHIDVVNFLLEIDSN 253
               T L  AA +G I++   +L+ + +
Sbjct: 219 HQGLTPLKLAAKEGKIEIFRHILQREFS 246

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  131 bits (332), Expect = 5e-36
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
             L  AA  G  D V  L+   +         G + LH AA+ GH    + L+       
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                 K  +T LHMA    + +IV  L++    V   +D    TALH A +    ++V 
Sbjct: 62  A---RTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVE 117

Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
            L+   G DV++ +K  ++  D++   GN +L  +L+
Sbjct: 118 LLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  116 bits (293), Expect = 1e-30
 Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 13/161 (8%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           +       AA+ G  + ++ L+        TTD   ++ LH AA  GH      LL    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLL---R 55

Query: 253 NLAKI-ARNN-GKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQN 308
                 AR    +T LH AA  GH  +V+ L+    D +     D    TALH A +  +
Sbjct: 56  AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA---KDMLKMTALHWATEHNH 112

Query: 309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
           +++V  LI+    V   +     TA  I+I  G   +   L
Sbjct: 113 QEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  109 bits (275), Expect = 4e-28
 Identities = 51/193 (26%), Positives = 72/193 (37%), Gaps = 53/193 (27%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AARAG     + IL +  A    D        G +PL++AA+ GH    E +L+   
Sbjct: 6   LLEAARAGQDD-EVRILMANGAPFTTD------WLGTSPLHLAAQYGHFSTTEVLLRA-- 56

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
               S  AR   D                                 T LH AA++GH ++
Sbjct: 57  --GVSRDARTKVD--------------------------------RTPLHMAASEGHANI 82

Query: 244 VNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTA 299
           V  LL    + A +        T LH A    H EVV+ L+    D  T     K  +TA
Sbjct: 83  VEVLL---KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT---QSKFCKTA 136

Query: 300 LHMAVKGQNEDIV 312
             +++   NED+ 
Sbjct: 137 FDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTG--FRTDKKGQTALHMAVKGQNEDIVLELIRP 318
           +    L  AAR G  + V+ L++     G  F TD  G + LH+A +  +      L+R 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN----GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 378
             S          T LH+A  +G   IV  LL   G DVN+ +    + L  A +  + E
Sbjct: 57  GVSR-DARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQE 114

Query: 379 LFSLLKEAGA 388
           +  LL + GA
Sbjct: 115 VVELLIKYGA 124

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.0 bits (139), Expect = 6e-10
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 38/132 (28%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDAN-EAKD-------------------- 150
             D     G   LHLAA+ G+ S   E+L     + +A+                     
Sbjct: 29  TTD---WLGTSPLHLAAQYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVE 84

Query: 151 -LLSK------KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS--FHVA 201
            LL        K+    T L+ A E  H  +VE ++++     A +  ++ +    F ++
Sbjct: 85  VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY----GADVHTQSKFCKTAFDIS 140

Query: 202 AKQGHLEVLKEL 213
              G+ ++ + L
Sbjct: 141 IDNGNEDLAEIL 152

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  130 bits (331), Expect = 3e-35
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 23/203 (11%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           NG     +  ++   + L  L           D    T L  A   G  + ++ L+E   
Sbjct: 7   NGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVENFD 59

Query: 253 NL-AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNE 309
            L  K     G T L  A +   L + + L+SK  + +T    D  G+T L  ++     
Sbjct: 60  KLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT---KDFSGKTPLMWSIIFGYS 114

Query: 310 DIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES 366
           ++   L+         +   + +G T L +A K GR++IV+ LL + G D+++ +  G +
Sbjct: 115 EMSYFLL----EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLT 169

Query: 367 PLDVAEKLGNTELFSLLKEAGAA 389
               A   G  E+  +  E   A
Sbjct: 170 AEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  130 bits (330), Expect = 3e-35
 Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 24/204 (11%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL 214
            ++ GE    +  E      ++ +  + +                VA   G    + +L+
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNYRD--------SYNRTPLMVACMLGMENAIDKLV 55

Query: 215 GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMG 273
             F   +   D+  STAL  A     + +   LL   SN+  K    +GKT L  +   G
Sbjct: 56  ENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK--DFSGKTPLMWSIIFG 112

Query: 274 HLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDN 328
           + E+   L+    + +     + +G+T L +A K    +IV +L+     +   +   D 
Sbjct: 113 YSEMSYFLLEHGANVND---RNLEGETPLIVASKYGRSEIVKKLL----ELGADISARDL 165

Query: 329 KGNTALHIAIKKGRTQIVRCLLSI 352
            G TA   A   GR ++++    +
Sbjct: 166 TGLTAEASARIFGRQEVIKIFTEV 189

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  129 bits (328), Expect = 3e-35
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 10/163 (6%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
             L +AAA+G ++ +  LL+ + N+ A+     G+T L    ++G+ E+ + L+ +  +P
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQ-VMKLGNPEIARRLLLRGANP 63

Query: 287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
                 D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V
Sbjct: 64  D---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVV 119

Query: 347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 389
             L+     +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  115 bits (290), Expect = 4e-30
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 47/198 (23%)

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF 217
                L  AA  G    +  +LQ+      ++ A+NG+                   G  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQN----NVNVNAQNGF-------------------GR- 39

Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR--NNGKTVLHSAARMGHL 275
                       TAL      G+ ++   LL      A        G  V+H AAR G L
Sbjct: 40  ------------TALQ-VMKLGNPEIARRLL---LRGANPDLKDRTGFAVIHDAARAGFL 83

Query: 276 EVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 333
           + ++ L+    D +     D +G   LH+A K  +  +V  L++   S +   ++KG+TA
Sbjct: 84  DTLQTLLEFQADVNI---EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140

Query: 334 LHIAIKKGRTQIVRCLLS 351
             +A   GR ++V  + +
Sbjct: 141 CDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  106 bits (268), Expect = 4e-27
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 14/163 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AA  G+L   +  L   + N     ++ +N  G T L V    G+  I   +L    
Sbjct: 9   LASAAARGDLE-QLTSLLQNNVN-----VNAQNGFGRTALQVMKL-GNPEIARRLLLR-- 59

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
              A+   ++  G+   H AA+ G L+ L+ LL    + V   D   +  LH AA +GH+
Sbjct: 60  --GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHL 116

Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
            VV FL++  ++      + G T    A   G  EVV  + + 
Sbjct: 117 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  100 bits (251), Expect = 7e-25
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 10/139 (7%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
                 L SAA  G LE + +L+    + +     +  G+TAL +   G N +I   L+ 
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNA---QNGFGRTALQVMKLG-NPEIARRLLL 58

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
              +   L+D  G   +H A + G    ++ LL     DVN  +  G  PL +A K G+ 
Sbjct: 59  RGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHL 116

Query: 378 ELFSLLKEAGAA--HSKDH 394
            +   L +  A+    ++H
Sbjct: 117 RVVEFLVKHTASNVGHRNH 135

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
                  L  A  +G  + +  LL    ++VN+ N  G + L V  KLGN E+   L   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLR 59

Query: 387 GA 388
           GA
Sbjct: 60  GA 61

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + +     G+L LHLAA+ G+L RV+E L    A+     +  +N +G+T   +A   G 
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHL-RVVEFLVKHTASN----VGHRNHKGDTACDLARLYGR 149

Query: 172 ALIVEEMLQH 181
             +V  M  +
Sbjct: 150 NEVVSLMQAN 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  127 bits (322), Expect = 2e-34
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
             L  AA  G ++ V  L  + S   +       T LH AA    + VV+ L+    D  
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                DK G   LH A    + ++   L++    V  + D    T LH A  KG+ +I +
Sbjct: 70  ---AKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICK 125

Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
            LL   G D    N+ G +PLD+ +  G+T++  LL+   A
Sbjct: 126 LLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  103 bits (260), Expect = 5e-26
 Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 52/203 (25%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
              D QL  AA+AG++   ++ L +  +   +D          TPL+ AA      +VE 
Sbjct: 6   SEADRQLLEAAKAGDV-ETVKKLCTVQSVNCRD----IEGRQSTPLHFAAGYNRVSVVEY 60

Query: 178 MLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
           +LQH     A + A++         K G                          LH A +
Sbjct: 61  LLQH----GADVHAKD---------KGG-----------------------LVPLHNACS 84

Query: 238 QGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTD 293
            GH +V   L+    + A +  A     T LH AA  G  E+ K L+    DP+   + +
Sbjct: 85  YGHYEVAELLV---KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKN 138

Query: 294 KKGQTALHMAVKGQNEDIVLELI 316
           + G T L +   G + DI   L 
Sbjct: 139 RDGNTPLDLVKDG-DTDIQDLLR 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 95.1 bits (238), Expect = 4e-23
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 319
           +     L  AA+ G +E VK L +         + +  T LH A       +V  L+   
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL--- 62

Query: 320 PSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 376
                 +  +D  G   LH A   G  ++   L+   G  VN  +    +PL  A   G 
Sbjct: 63  -QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGK 120

Query: 377 TELFSLLKEAGA 388
            E+  LL + GA
Sbjct: 121 YEICKLLLQHGA 132

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 79.7 bits (198), Expect = 1e-17
 Identities = 37/164 (22%), Positives = 56/164 (34%), Gaps = 50/164 (30%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH AA    +S V+E L    A+  AKD      + G  PL+ A   GH  + E +++H 
Sbjct: 46  LHFAAGYNRVS-VVEYLLQHGADVHAKD------KGGLVPLHNACSYGHYEVAELLVKH- 97

Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID 242
               A +   + +                                  T LH AAA+G  +
Sbjct: 98  ---GAVVNVADLW-------------------KF-------------TPLHEAAAKGKYE 122

Query: 243 VVNFLLEIDSNLAKI-ARNN-GKTVLHSAARMGHLEVVKALVSK 284
           +   LL    + A    +N  G T L      G  ++   L   
Sbjct: 123 ICKLLL---QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 59.3 bits (145), Expect = 1e-10
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
           +++ +  L  A K G  + V+ L +++ ++   +     +PL  A       +   L + 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 387 GA-AHSKD-HGKPP 398
           GA  H+KD  G  P
Sbjct: 65  GADVHAKDKGGLVP 78

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  125 bits (318), Expect = 7e-34
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
             L  AA  G  D V  L+   +++      +G T LH AA  GHLE+V+ L+    D +
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                D  G T L +A    + +IV  L++    V    D +G+T LH+A   G  +IV 
Sbjct: 75  AV---DHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVE 130

Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
            LL   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 131 VLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  124 bits (314), Expect = 3e-33
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 12/163 (7%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           +       AA+ G  + ++ L+    + V   D S  T LH AA  GH+++V  LL    
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLL---K 68

Query: 253 NLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQN 308
           N A +    + G T L  AA  GHLE+V+ L+    D +     D +G T LH+A    +
Sbjct: 69  NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA---NDMEGHTPLHLAAMFGH 125

Query: 309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
            +IV  L++    V   +D  G TA  I+I  G   +   L  
Sbjct: 126 LEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  115 bits (292), Expect = 3e-30
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AARAG     + IL +  A+     ++ ++  G TPL++AA +GH  IVE +L++  
Sbjct: 18  LLEAARAGRD-DEVRILMANGAD-----VNAEDASGWTPLHLAAFNGHLEIVEVLLKN-- 69

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
              A + A +  G     +AA  GHLE+++ LL    + V   D+   T LH AA  GH+
Sbjct: 70  --GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHL 126

Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 285
           ++V  LL+  +++       GKT    +   G+ ++ + L   +
Sbjct: 127 EIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 99.7 bits (250), Expect = 1e-24
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
           ++    L  AAR G  + V+ L++   D +     D  G T LH+A    + +IV  L++
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNA---EDASGWTPLHLAAFNGHLEIVEVLLK 68

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
               V    D+ G T L +A   G  +IV  LL   G DVN+ +  G +PL +A   G+ 
Sbjct: 69  NGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHL 126

Query: 378 ELFSLLKEAGA 388
           E+  +L + GA
Sbjct: 127 EIVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.4 bits (140), Expect = 6e-10
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
                 +     L  A + GR   VR L++  G DVN+ + +G +PL +A   G+ E+  
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 382 LLKEAGA 388
           +L + GA
Sbjct: 65  VLLKNGA 71

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  124 bits (314), Expect = 2e-33
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 11/156 (7%)

Query: 199 HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA 258
             AA +G ++ ++ LL          +    TAL      G   +   LL+  ++   + 
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASP-NVQ 64

Query: 259 RNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
             +G + +H AAR G L+ +K LV    D +     D  G   +H+AV+  +  +V  L 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNV---PDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 317 -RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
              D       D +G T L +A+++G   +V  L  
Sbjct: 122 AESDLHR---RDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  123 bits (312), Expect = 3e-33
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--D 285
             L  AAA+G +  V  LL     L         GKT L      G   +   L+ +   
Sbjct: 4   DRLSGAAARGDVQEVRRLLH--RELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
           P+     D  G + +H A +    D +  L+     V  + D  G   +H+A+++G T +
Sbjct: 61  PNV---QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAV 116

Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
           V  L +    D++  +  G +PL++A + G  +L  +L
Sbjct: 117 VSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  116 bits (294), Expect = 1e-30
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           R   +L  AA  G++  V  +L     +         N+ G+T L V    G   I  E+
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQVMMF-GSTAIALEL 54

Query: 179 LQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
           L+      AS   +  +G    H AA+ G L+ LK L+    + V   D + +  +H A 
Sbjct: 55  LKQ----GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAV 109

Query: 237 AQGHIDVVNFLLE-IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
            +GH  VV+FL    D +        G T L  A + G  ++V  L  
Sbjct: 110 QEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 93.6 bits (234), Expect = 1e-22
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
               L  AA  G ++ V+ L+ ++       ++ G+TAL + + G +  I LEL++   S
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGAS 60

Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
              ++D  G + +H A + G    ++ L+   G DVN  +  G  P+ +A + G+T + S
Sbjct: 61  P-NVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 382 LLKEAGAAHSKDH 394
            L      H +D 
Sbjct: 119 FLAAESDLHRRDA 131

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
           +    L  A    +   V  L+  +       +  G TAL + +  G T I   LL  +G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK-QG 58

Query: 355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
              N  + +G SP+  A + G  +   +L E GA
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           +    L  A  +G  Q VR LL  E +  ++LN+ G++ L V    G+T +   L + GA
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59

Query: 389 -AHSKD 393
             + +D
Sbjct: 60  SPNVQD 65

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + + P   G L +HLA + G+ + V+  L + +++     L +++  G TPL +A + G 
Sbjct: 93  DVNVPDGTGALPIHLAVQEGHTA-VVSFLAA-ESD-----LHRRDARGLTPLELALQRGA 145

Query: 172 ALIVEEMLQHM 182
             +V+ +  HM
Sbjct: 146 QDLVDILQGHM 156

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  128 bits (323), Expect = 2e-33
 Identities = 43/279 (15%), Positives = 81/279 (29%), Gaps = 55/279 (19%)

Query: 107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAK--DLLSKKNQEGETPLY 164
              +K      +R    +  A    N   +  +L     ++ +  D   K  + G+T L 
Sbjct: 3   SAGEKPPRLYDRR---SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLL 59

Query: 165 VA---AESGHALIVEEMLQH-------MNLETASIPARNGYDS--FHVAAKQGHLEVLKE 212
            A     +G    +  +L              AS            H+A ++ ++ ++  
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119

Query: 213 LL------------GEFPNLVMTTDLSC-STALHTAAAQGHIDVVNFLLEIDSNLAKIAR 259
           L+              F               L  AA    + +V FLL+     A I+ 
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179

Query: 260 --NNGKTVLHSAARMGHLEVVK---------------ALVSKDPSTGFRTDKKGQTALHM 302
             + G TVLH+   +    V                 A +         T++KG T L +
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

Query: 303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
           A       ++  +++         +       H A    
Sbjct: 240 AASSGKIGVLAYILQ--------REIHEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  119 bits (300), Expect = 3e-30
 Identities = 44/254 (17%), Positives = 74/254 (29%), Gaps = 52/254 (20%)

Query: 187 ASIPARNGYDS--FHVAAKQGHLEVLKELLGEFPNL------VMTTDLSC-STALHTAAA 237
           A       YD      A  Q + + L+ LL                D     T L  A  
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 238 ---QGHIDVVNFLLEIDSNLAKIAR----------NNGKTVLHSAARMGHLEVVKALVS- 283
               G  D +  LL++      + +            G+T LH A    ++ +V  LV  
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 284 ------KDPSTGFRT------DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNK 329
                       F+          G+  L +A       IV  L++    P+ +   D+ 
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 330 GNTALHIAIKKGRTQIVRCLLSIE---------------GIDVNSLNKAGESPLDVAEKL 374
           GNT LH  ++     +                              N+ G +PL +A   
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243

Query: 375 GNTELFSLLKEAGA 388
           G   + + + +   
Sbjct: 244 GKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  109 bits (274), Expect = 7e-27
 Identities = 36/225 (16%), Positives = 69/225 (30%), Gaps = 47/225 (20%)

Query: 124 LHLA---ARAGNLSRVMEIL--QSCDANEAKDLL----SKKNQEGETPLYVAAESGHALI 174
           L  A      G     + +L   +   +  K  +    +    +G+T L++A E  +  +
Sbjct: 58  LLKAMLNLHNGQN-DTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 175 VEEMLQH------------MNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNL 220
           V  ++++                        G     +AA    L ++K LL     P  
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 221 VMTTDLSCSTALHTAAAQGH---------IDVVNFLLEIDSNL------AKIARNNGKTV 265
           +   D   +T LH                  + N +L + + L       +I    G T 
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 266 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 310
           L  AA  G + V+  ++ +        +       H A    +  
Sbjct: 237 LALAASSGKIGVLAYILQR--------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 84.4 bits (209), Expect = 2e-18
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 31/170 (18%)

Query: 105 GGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLY 164
           G   +K         G+L L LAA    L+ +++ L       A   +S ++  G T L+
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLA-IVKFLLQNSWQPAD--ISARDSVGNTVLH 189

Query: 165 VAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTT 224
              E     +                       F  +     L +  +L      L   T
Sbjct: 190 ALVEVADNTVDNTK-------------------FVTSMYNEILILGAKLH-PTLKLEEIT 229

Query: 225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 274
           +    T L  AA+ G I V+ ++L+ +         +     H+AA   H
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYILQRE--------IHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 104 IGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSC----------DANEAKDLLS 153
           +    +  +  +    G+  LH      + +       +             +    L  
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGH 206
             N++G TPL +AA SG   ++  +LQ            +  +  H AA   H
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYILQR---------EIHEPECRHAAAHHHH 271

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  126 bits (319), Expect = 2e-33
 Identities = 37/215 (17%), Positives = 68/215 (31%), Gaps = 16/215 (7%)

Query: 137 MEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN-- 193
           M  +     +        +        L  AA +G   +V++ ++ M          N  
Sbjct: 1   MRSVLRKAGSPRKAR---RARLNPLVLLLDAALTGELEVVQQAVKEM----NDPSQPNEE 53

Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
           G  + H A    +  ++  L+    N V + D    T LH AA+     +   L++  + 
Sbjct: 54  GITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112

Query: 254 LAKIARNNGKTVLHSAARM--GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           +     ++G T          G+ +    L   + S G   +     AL         D 
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG-LMNSGAVYALWDYSAE-FGDE 170

Query: 312 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
           +        +VL+  D    T    A   G+   V
Sbjct: 171 LSFREGESVTVLR-RDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  123 bits (311), Expect = 3e-32
 Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 7/188 (3%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           N       AA  G LEV+++ + E  +     +    TALH A    +  +V+FL+   +
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN--ED 310
           N+     ++G T LH AA      +  ALV    +    T   G TA       +    D
Sbjct: 79  NVNS-PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD 137

Query: 311 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 370
               L   + S+  L ++    AL     +     +      E + V   +   E+    
Sbjct: 138 CATYLADVEQSM-GLMNSGAVYALWDYSAEF-GDELSFREG-ESVTVLRRDGPEETDWWW 194

Query: 371 AEKLGNTE 378
           A   G   
Sbjct: 195 AALHGQEG 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  120 bits (303), Expect = 3e-31
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 15/172 (8%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK-- 284
              L  AA  G ++VV   +     +         G T LH+A    +  +V  L++   
Sbjct: 22  LVLLLDAALTGELEVVQQAV---KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 285 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA--IKKGR 342
           + +     D  G T LH A    +  I + L++   ++     + G TA       ++G 
Sbjct: 79  NVN---SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY 135

Query: 343 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 393
                 L  +    +  +N      L         EL S  +        +D
Sbjct: 136 ADCATYLADV-EQSMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRD 185

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.0 bits (198), Expect = 4e-17
 Identities = 38/147 (25%), Positives = 53/147 (36%), Gaps = 38/147 (25%)

Query: 244 VNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH 301
           +  +L        A+ AR N   +L  AA  G LEVV+  V                   
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK-----------------E 43

Query: 302 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 361
           M       D                + +G TALH AI      IV  L++  G +VNS +
Sbjct: 44  MN------DP------------SQPNEEGITALHNAICGANYSIVDFLIT-AGANVNSPD 84

Query: 362 KAGESPLDVAEKLGNTELFSLLKEAGA 388
             G +PL  A    +T +   L + GA
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGA 111

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 27/149 (18%), Positives = 39/149 (26%), Gaps = 17/149 (11%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAES--GHALIVEEMLQ 180
           LH AA   +   +   L    A   A         +G T          G+A     +  
Sbjct: 91  LHCAASCNDTV-ICMALVQHGAAIFATT-----LSDGATAFEKCDPYREGYADCATYLAD 144

Query: 181 HMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ 238
                  S+   N     +    + +   E+     GE    V+  D    T    AA  
Sbjct: 145 VE----QSMGLMNSGAVYALWDYSAEFGDELS-FREGESVT-VLRRDGPEETDWWWAALH 198

Query: 239 GHIDVVNFLLEIDSNLAKIARNNGKTVLH 267
           G    V           K  R+  K   H
Sbjct: 199 GQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  123 bits (312), Expect = 8e-33
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 9/160 (5%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK-DPST 288
                    GH         I +++     +  +T   +AAR    + +  L+   D   
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLEDRDVDA 71

Query: 289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
               D+ G+TAL       ++  V  L      +   +   G TALH+A    R ++V  
Sbjct: 72  ---VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           L+   G D+   ++ G + L++A ++  T       + G 
Sbjct: 129 LVE-LGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  122 bits (309), Expect = 2e-32
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 10/167 (5%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE-ID 251
            G   + +  K GH            + V++      T   TAA +     ++ LLE  D
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAAD-VVSEY---ETPWWTAARKADEQALSQLLEDRD 68

Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
            +       NG+T L   A +G  + V+ L         R  + G TALHMA      ++
Sbjct: 69  VD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125

Query: 312 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
           V  L+     + ++ED +G TAL +A +  +T      +   G  + 
Sbjct: 126 VEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQF-GRRIG 170

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  109 bits (275), Expect = 8e-28
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 13/168 (7%)

Query: 117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE 176
              G ++  +  + G+            A+           E ETP + AA       + 
Sbjct: 11  AGEGAMEYLIEWKDGHSPSW-VPSSYIAAD--------VVSEYETPWWTAARKADEQALS 61

Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
           ++L+  +++       NG  +    A  G  + ++ L     +L         TALH AA
Sbjct: 62  QLLEDRDVDAVD---ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118

Query: 237 AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
                +VV  L+E+ +++ ++    G T L  A  +         +  
Sbjct: 119 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 97.6 bits (244), Expect = 1e-23
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 10/142 (7%)

Query: 249 EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 308
           E++  +       G        + GH                    + +T    A +  +
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVSEYETPWWTAARKAD 56

Query: 309 EDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN-KAGES 366
           E  + +L+   D       D  G TAL      G  + VR L    G D++  + + G +
Sbjct: 57  EQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLT 112

Query: 367 PLDVAEKLGNTELFSLLKEAGA 388
            L +A      E+   L E GA
Sbjct: 113 ALHMAAGYVRPEVVEALVELGA 134

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 27/93 (29%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH+AA       V+E L    A+ E +D      + G T L +A E          +Q  
Sbjct: 114 LHMAAGYVRPE-VVEALVELGADIEVED------ERGLTALELAREILKTTPKGNPMQF- 165

Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLG 215
                               + G  +V+  L G
Sbjct: 166 ------------------GRRIGLEKVINVLEG 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  122 bits (309), Expect = 2e-32
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 230 TALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--D 285
             +  AA  G  +    L E   +   + +  N    VL +       ++   L++K  D
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL----------EDNKGNTALH 335
             +     K+G T      +G   DI          + K+                  + 
Sbjct: 68  IKS---RTKEGTTLFFPLFQGGGNDIT-----GTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 336 IAIKKG------RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA- 388
             I            + + + S  G+ +   +K G + L+  ++        ++++    
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179

Query: 389 AHSKD 393
            + K+
Sbjct: 180 YNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 15/142 (10%)

Query: 261 NGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 318
           +    + +AA +G  E    L  K  +              L          I + LI  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE-----GIDVNSLNKAGESPLDVAEK 373
              + K    +G T      + G   I       +     G D+ +L K  +  +     
Sbjct: 65  GADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123

Query: 374 LGNTELFS-------LLKEAGA 388
               +          +  ++G 
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGL 145

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 8/76 (10%), Positives = 19/76 (25%), Gaps = 11/76 (14%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSR------VMEILQSCDANEAKDLLSKKNQEGETPLYV 165
           +  +  K   + +        +           I            L  K++ G T L  
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-----LLIKDKWGLTALEF 160

Query: 166 AAESGHALIVEEMLQH 181
                  + ++ M  +
Sbjct: 161 VKRCQKPIALKMMEDY 176

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  123 bits (311), Expect = 2e-32
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 19/237 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
            +LA   G L  + E + +  +       ++ +Q+  T L+ A  +GH  IVE +LQ   
Sbjct: 11  CNLAYS-GKLDELKERILADKSL-----ATRTDQDSRTALHWACSAGHTEIVEFLLQL-- 62

Query: 184 LETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI 241
                +  +   G+   H+AA  G  E++K LL +  + V   + +  T LH AA++   
Sbjct: 63  --GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRH 119

Query: 242 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH 301
           ++   LLE  +N      +   T +H AA  G+L++V  L+    ST  + D +G T LH
Sbjct: 120 EIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLH 177

Query: 302 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 358
           +A   +  +    L+    S+  +E+ +  T L +A  KG   ++   L+ EG + +
Sbjct: 178 LACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVA--KGGLGLILKRLA-EGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  119 bits (300), Expect = 8e-31
 Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 13/237 (5%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLK 211
           +          +A       + E +L       +     +     + H A   GH E+++
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILAD----KSLATRTDQDSRTALHWACSAGHTEIVE 57

Query: 212 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271
            LL      V   D +  + LH AA+ G  ++V  LL   +++      NG T LH AA 
Sbjct: 58  FLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAAS 115

Query: 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN 331
               E+   L+    +     D    TA+H A    N  +V  L+    S   ++D +GN
Sbjct: 116 KNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGN 173

Query: 332 TALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           T LH+A  + R +  + L++ +G  +   NK  ++PL VA+  G   L       G 
Sbjct: 174 TPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGE 227

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  114 bits (288), Expect = 3e-29
 Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 8/219 (3%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           +     ++A      E+ + +L +       TD    TALH A + GH ++V FLL++  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
            +     + G + LH AA  G  E+VKAL+ K        ++ G T LH A      +I 
Sbjct: 65  PV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIA 122

Query: 313 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 372
           + L+    +    +D+   TA+H A  KG  ++V  LL       N  +  G +PL +A 
Sbjct: 123 VMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLAC 180

Query: 373 KLGNTELFSLLKEAGA---AHSKDHGKPPSATKQLKQTV 408
                E    L   GA     +K+   P    K     +
Sbjct: 181 DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  111 bits (281), Expect = 3e-29
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
           + G+T+LH A+  G +  V+ L+    DP+     D  G T LH A    +  +V  L++
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
               V      + ++ LH A K G   IV+ LLS  G   N++N  G  P+D  +     
Sbjct: 65  HKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMK 122

Query: 378 ELFSLLKEAGA 388
            L  L ++  +
Sbjct: 123 SLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  107 bits (270), Expect = 1e-27
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNN-GKTVLHSAARMGHLEVVKALVSK-- 284
            T LH A+ +G I  V +LL    N +    +++ G T LH A   GHL+VV+ L+    
Sbjct: 11  ETLLHIASIKGDIPSVEYLL---QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67

Query: 285 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
             +T   T  +  + LH A K  + DIV  L+    S     +  G   +     +    
Sbjct: 68  LVNT---TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKS 123

Query: 345 IVRCLLS 351
           ++     
Sbjct: 124 LLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  101 bits (254), Expect = 1e-25
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKE 212
            N  GET L++A+  G    VE +LQ+     +    ++  G+   H A   GHL+V++ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQN----GSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 213 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 272
           LL      V TT     + LH AA  GH+D+V  LL   ++        G   +      
Sbjct: 62  LLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDE 119

Query: 273 GHLEVVKALVS 283
               ++     
Sbjct: 120 SMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 292 TDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
           T+ +G+T LH+A    +   V  L++   DP+V   +D+ G T LH A   G  ++V  L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELL 62

Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD-HGKPP 398
           L      VN+     +SPL  A K G+ ++  LL   GA  ++ +  G  P
Sbjct: 63  LQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
             ++ G + D  LH AA+ G++  ++++L S  A+      +  N  G  P+    +   
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVD-IVKLLLSYGAS-----RNAVNIFGLRPVDYTDDESM 121

Query: 172 ALIVEEMLQHMNLETA 187
             ++    ++ +   +
Sbjct: 122 KSLLLLPEKNESSSAS 137

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  111 bits (281), Expect = 5e-29
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 286
           +  L TAAA+G ++ V  LLE  +N      + G+  +     MG   V + L+    +P
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAEP 70

Query: 287 STGFRTDKKGQT-ALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRT 343
           +     D    T  +H A +    D ++ L R      V    D  G   + +A + G  
Sbjct: 71  NC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDLAEELGHR 124

Query: 344 QIVRCLLSIEGIDVNSLNK----AGESPLDVAE 372
            + R L +         N     A E P D+ +
Sbjct: 125 DVARYLRA-AAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  107 bits (271), Expect = 1e-27
 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 16/148 (10%)

Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 312
           A  +       L +AA  G +E V+AL+    +P+     +  G+  + + + G +  + 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNA---PNSYGRRPIQVMMMG-SARVA 60

Query: 313 LELIRP--DPSVLKLEDNKGNT-ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 369
             L+    +P+     D    T  +H A ++G    +  L    G  ++  +  G  P+D
Sbjct: 61  ELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVD 116

Query: 370 VAEKLGNTELFSLLKEAGA---AHSKDH 394
           +AE+LG+ ++   L+ A       +   
Sbjct: 117 LAEELGHRDVARYLRAAAGGTRGSNHAR 144

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  107 bits (270), Expect = 2e-27
 Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 18/162 (11%)

Query: 155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS--FHVAAKQGHLEVLKE 212
             +     L  AA  G    V  +L+      A+  A N Y      V    G   V + 
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAEL 62

Query: 213 LL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA 270
           LL  G  PN       + +  +H AA +G +D +  L    + L  +    G+  +  A 
Sbjct: 63  LLLHGAEPN--CADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAE 119

Query: 271 RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
            +GH +V + L +           +G     +       DI 
Sbjct: 120 ELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  106 bits (268), Expect = 3e-27
 Identities = 36/174 (20%), Positives = 53/174 (30%), Gaps = 25/174 (14%)

Query: 110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES 169
           +    S  +     L  AA  G +   +  L    AN      +  N  G  P+ V    
Sbjct: 2   EPAAGSSMEPSADWLATAAARGRV-EEVRALLEAGAN-----PNAPNSYGRRPIQVMMM- 54

Query: 170 GHALIVEEMLQHMNLETASIPARNGYDS---FHVAAKQGHLEVLKELL--GEFPNLVMTT 224
           G A + E +L H     A     +        H AA++G L+ L  L   G   +     
Sbjct: 55  GSARVAELLLLHG----AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VR 107

Query: 225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
           D      +  A   GH DV  +L              G       A  G  ++ 
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRA------AAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 11/65 (16%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
             D     G L + LA   G+   V   L++                G     + A  G 
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRD-VARYLRAAAGG----------TRGSNHARIDAAEGP 151

Query: 172 ALIVE 176
           + I +
Sbjct: 152 SDIPD 156

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  110 bits (278), Expect = 7e-29
 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 7/124 (5%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
           T LH AA  GH++VV  LLE  +++      NG+T LH AAR GHLEVVK L+    D +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                DK G+T LH+A +  + ++V  L+     V   +D  G T LH+A + G  ++V+
Sbjct: 63  ---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 118

Query: 348 CLLS 351
            LL 
Sbjct: 119 LLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  100 bits (252), Expect = 2e-25
 Identities = 53/126 (42%), Positives = 73/126 (57%), Gaps = 7/126 (5%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           NG    H+AA+ GHLEV+K LL    + V   D +  T LH AA  GH++VV  LLE  +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNED 310
           ++      NG+T LH AAR GHLEVVK L+    D +     DK G+T LH+A +  + +
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK---DKNGRTPLHLAARNGHLE 115

Query: 311 IVLELI 316
           +V  L+
Sbjct: 116 VVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.0 bits (248), Expect = 7e-25
 Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 8/128 (6%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGE 216
           G TPL++AA +GH  +V+ +L+      A + A++  G    H+AA+ GHLEV+K LL  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 217 FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 276
             + V   D +  T LH AA  GH++VV  LLE  +++      NG+T LH AAR GHLE
Sbjct: 58  GAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLE 115

Query: 277 VVKALVSK 284
           VVK L+  
Sbjct: 116 VVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 63.1 bits (155), Expect = 3e-12
 Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 10/104 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++  K G   LHLAAR G+L  V+++L    A+     ++ K++ G TPL++AA +GH
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLE-VVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGH 80

Query: 172 ALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKELL 214
             +V+ +L+   ++       +NG    H+AA+ GHLEV+K LL
Sbjct: 81  LEVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           G T LH+A + G  ++V+ LL   G DVN+ +K G +PL +A + G+ E+  LL EAGA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 6/58 (10%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQH 181
           LHLAAR G+L  V+++L    A+     ++ K++ G TPL++AA +GH  +V+ +L+ 
Sbjct: 72  LHLAARNGHLE-VVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  113 bits (284), Expect = 2e-28
 Identities = 50/279 (17%), Positives = 84/279 (30%), Gaps = 72/279 (25%)

Query: 124 LHLAARAGN---LSRVMEILQSCDAN-EAKDLLSKKNQEGETPLYVAA---ESGHALIVE 176
           L      G+   L  ++  L +       ++   ++   G+T L  A     +G    + 
Sbjct: 9   LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEF--REPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 177 EMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC-STALHTA 235
            +L           A    +                 + EF N           TALH A
Sbjct: 67  ILLDI---------AEKTGN-----------------MREFINSPFRDVYYRGQTALHIA 100

Query: 236 AAQGHIDVVNFLLE-------------IDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 282
             +     V  L+E                         G+  L  AA      +V  L 
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160

Query: 283 SK-----DPSTGFRTDKKGQTALHMAVKGQNE------------DIVLEL---IRPDPSV 322
                  D     R D +G T LH  V   +             D++L     + PD ++
Sbjct: 161 ENGHKQADLR---RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217

Query: 323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 361
             L +N G + L +A K G+  I + ++  E  D  + +
Sbjct: 218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  111 bits (278), Expect = 2e-27
 Identities = 51/245 (20%), Positives = 76/245 (31%), Gaps = 52/245 (21%)

Query: 196 DSFHVAAKQGHLEVLKELL------GEFPNLVMTTDLSC-STALHTAAAQ---GHIDVVN 245
                   +G  + L+ LL       +        + S   T L  A      G  D + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 246 FLLEIDSNLAKIAR----------NNGKTVLHSAARMGHLEVVKALVSK----------- 284
            LL+I      +              G+T LH A        V+ LV K           
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 285 --DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAI-- 338
              P         G+  L +A       IV  L       + L+ +D++GNT LH  +  
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186

Query: 339 -------KKGRTQIVRCLLSIEGIDVNS-------LNKAGESPLDVAEKLGNTELFSLLK 384
                   K  T++   LL  +   +         LN  G SPL +A K G   +F  + 
Sbjct: 187 ADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245

Query: 385 EAGAA 389
               A
Sbjct: 246 RREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 76.7 bits (189), Expect = 9e-16
 Identities = 32/202 (15%), Positives = 63/202 (31%), Gaps = 63/202 (31%)

Query: 124 LHLAARAGNLSRVMEILQSCDAN-EAKD--------LLSKKNQEGETPLYVAAESGHALI 174
           LH+A         +E+L    A+  A+                 GE PL +AA +    I
Sbjct: 97  LHIAIERRCKH-YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155

Query: 175 VEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHT 234
           V  + ++   + A +  ++          +G+                       T LH 
Sbjct: 156 VHYLTEN-GHKQADLRRQD---------SRGN-----------------------TVLHA 182

Query: 235 AAAQGH---------IDVVNFLLEIDSNL------AKIARNNGKTVLHSAARMGHLEVVK 279
             A              + + LL   + L        +  N+G + L  AA+ G + + +
Sbjct: 183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242

Query: 280 ALVSKDPSTGFRTDKKGQTALH 301
            ++ ++ +     D       H
Sbjct: 243 HIIRREIA-----DAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 24/168 (14%), Positives = 47/168 (27%), Gaps = 38/168 (22%)

Query: 105 GGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLY 164
           G   + K++      G+L L LAA       ++  L      +A   L +++  G T L+
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPH-IVHYLTENGHKQAD--LRRQDSRGNTVLH 181

Query: 165 VAAESGH-----ALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPN 219
                          V +M   + ++ A +      ++  +    G              
Sbjct: 182 ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA--LLNNDG-------------- 225

Query: 220 LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLH 267
                     + L  AA  G I +   ++                  H
Sbjct: 226 ---------LSPLMMAAKTGKIGIFQHII---RREIAD--AAAHHHHH 259

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  114 bits (286), Expect = 5e-28
 Identities = 57/363 (15%), Positives = 114/363 (31%), Gaps = 71/363 (19%)

Query: 26  EKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPSTRGVMEKQKSFRG 85
                  R      +F  + T    S+   + K      V  ++Q        ++  F  
Sbjct: 15  NGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPE 74

Query: 86  FIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDA 145
             E   S                   N++S G   + Q    +    L  V +   +   
Sbjct: 75  IQEMPTSLN-------------NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121

Query: 146 NEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQG 205
               +L    ++ G TPL+      +  +V+ +++H     ++    +            
Sbjct: 122 ----NLNIPVDEHGNTPLHWLTSIANLELVKHLVKH----GSNRLYGDNM---------- 163

Query: 206 HLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI-DVVNFLLEIDSNLAKIAR--NNG 262
                    GE             + L  A    +  D   F   +D     +    +  
Sbjct: 164 ---------GE-------------SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201

Query: 263 KTVLHSAARM-----------GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           +T+LH                 +L+++   + K  +   ++    + +      G+ +D 
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 312 VLELIRPDPSVLKL---EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
           +LE +     +  +   +D+ G+T L+IA + G   IV  LL   G D    NK+G  P+
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPV 320

Query: 369 DVA 371
           D  
Sbjct: 321 DFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  105 bits (263), Expect = 4e-25
 Identities = 53/306 (17%), Positives = 111/306 (36%), Gaps = 30/306 (9%)

Query: 105 GGGERKKNKDSPGKRGDLQL-HLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPL 163
           G  E     D+    G +        +  LS  ++I+++  +    D  +++  + E  L
Sbjct: 10  GDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVND--NEQKMKLEAFL 67

Query: 164 YVAAESGHALIVEEMLQHMNLETASIPARNGYDSF---HVAAKQGHLEVLKELLGEFPNL 220
                       +EM   +N ++++  +  G  +    HV+      EV         NL
Sbjct: 68  QRLLFPEI----QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123

Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGH---LE 276
            +  D   +T LH   +  ++++V  L++  SN   +  +N G++ L  A +  +     
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR--LYGDNMGESCLVKAVKSVNNYDSG 181

Query: 277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE-----------DIVLELIRPDPSVLKL 325
             +AL+          D   +T LH  +                DI++  I    +    
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 241

Query: 326 EDNKGNTALHIAIKKGRTQIVRCLLSIE---GIDVNSLNKAGESPLDVAEKLGNTELFSL 382
                  +        R   +   L ++      +N+ +  G++ L++A +LGN  +   
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301

Query: 383 LKEAGA 388
           L + GA
Sbjct: 302 LLDYGA 307

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 93.9 bits (233), Expect = 4e-21
 Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 27/199 (13%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH      NL  +++ L    +N         +  GE+ L  A +S +          ++
Sbjct: 135 LHWLTSIANL-ELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 184 LETASIPAR--NGYDSFHVAAK-----------QGHLEVLKELLGEFPNLVMTTDLSCST 230
                +           H               + +L++L   + +  N  + +  +   
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 231 ALHTAAAQGHIDVVNFLLEIDSNLAKI--AR-NNGKTVLHSAARMGHLEVVKALVSK--D 285
           +          D +   L++   +A +  A+ +NG T L+ AAR+G++ +V AL+    D
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308

Query: 286 PSTGFRTDKKGQTALHMAV 304
           P      +K G   +    
Sbjct: 309 PFI---ANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 76.6 bits (188), Expect = 2e-15
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 6/141 (4%)

Query: 259 RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 318
           +   +  L         E+  +L +   +         Q   H++     +++       
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-- 376
             ++    D  GNT LH        ++V+ L+   G +    +  GES L  A K  N  
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNY 178

Query: 377 -TELFSLLKEAGAA--HSKDH 394
            +  F  L +        +D 
Sbjct: 179 DSGTFEALLDYLYPCLILEDS 199

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  105 bits (266), Expect = 3e-27
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
            +    L +AA  G +E V+ L+    DP+     ++ G+  + + + G +  +   L+ 
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMMMG-SAQVAELLLL 65

Query: 318 --PDPSVLKLEDNKGNT-ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 374
              +P+     D    T  +H A ++G    +  L    G  ++  +  G  P+D+AE+ 
Sbjct: 66  HGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQ 121

Query: 375 GNTELFSLLKEAGA 388
           G+ ++   L  A  
Sbjct: 122 GHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  105 bits (265), Expect = 5e-27
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLK 211
                 +  L  AA  G    V ++L+      A   A N  G     V    G  +V +
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEA----GADPNALNRFGRRPIQVMM-MGSAQVAE 61

Query: 212 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271
            LL            + +  +H AA +G +D +  L    + L  +    G+  +  A  
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEE 120

Query: 272 MGHLEVVKALVSK 284
            GH ++ + L + 
Sbjct: 121 QGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  105 bits (264), Expect = 6e-27
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
             L TAAA+G ++ V  LLE  ++        G+  +      G  +V + L+    +P+
Sbjct: 14  AGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN 71

Query: 288 TGFRTDKKGQT-ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 346
                D    T  +H A +    D ++ L R    +  + D  G   + +A ++G   I 
Sbjct: 72  C---ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIA 127

Query: 347 RCLLS 351
           R L +
Sbjct: 128 RYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 65.2 bits (160), Expect = 7e-13
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
                  L  A      + V +L+          +  G   + + +  G  Q+   LL  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMM-MGSAQVAELLLL- 65

Query: 353 EGIDVNSLNKAGE-SPLDVAEKLGNTELFSLLKEAGA 388
            G + N  + A    P+  A + G  +   +L  AGA
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  102 bits (257), Expect = 4e-26
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSK-- 284
           C      A   G +D V   +    ++   +    G+  LH AA  G LE+++ L+ K  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTL--EGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 285 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGR 342
           D +     DK   T L  AV   +   V  L+    D +V   +   G TA      +  
Sbjct: 65  DINA---PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV---KGPDGLTAFEATDNQAI 118

Query: 343 TQIVR 347
             +++
Sbjct: 119 KALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  102 bits (256), Expect = 5e-26
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
           +        A + G L+ VK  V+K  D +   RT + G+  LH A      +I+  L+ 
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
               +    D    T L  A+ +G    V+ LLS  G D       G +  +  +     
Sbjct: 62  KGADINA-PDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAIK 119

Query: 378 EL 379
            L
Sbjct: 120 AL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.8 bits (250), Expect = 3e-25
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 193 NGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
                F  A K G L+ +K+ +  GE  N    T       LH AA  G ++++ FLL  
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQN 308
            +++      +  T L SA   GH+  VK L+SK  D +        G TA         
Sbjct: 63  GADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGLTAFEATDNQAI 118

Query: 309 EDIV 312
           + ++
Sbjct: 119 KALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 95.5 bits (239), Expect = 1e-23
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLK 211
                 +     A ++G    V++ +         +      G    H AA  G LE+L+
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAK----GEDVNRTLEGGRKPLHYAADCGQLEILE 57

Query: 212 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271
            LL +  + +   D    T L +A  +GH+  V  LL   ++   +   +G T   +   
Sbjct: 58  FLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDN 115

Query: 272 MGHLEVVK 279
                +++
Sbjct: 116 QAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 327 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
            +  +     A+K G    V+  ++ +G DVN   + G  PL  A   G  E+   L   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 387 GA 388
           GA
Sbjct: 63  GA 64

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++P K     L  A   G++S  +++L S  A+      + K  +G T          
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVS-CVKLLLSKGAD-----KTVKGPDGLTAFEATDNQAI 118

Query: 172 ALIVE 176
             +++
Sbjct: 119 KALLQ 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  102 bits (256), Expect = 5e-26
 Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 255 AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 312
                 +G T LH+AA+ GH E VK L+SK  D +      K G T LH+A K  + +IV
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIV 58

Query: 313 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 368
             L+     V       GNT  H+A K G  +IV+ L + +G DVN+ +       
Sbjct: 59  KLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDA-KGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 92.4 bits (231), Expect = 1e-22
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
               +++G    H AAK GH E +K+LL +  + V       +T LH AA  GH ++V  
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKL 60

Query: 247 LLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALH 301
           LL   +++      +G T  H A + GH E+VK L +K  D +             H
Sbjct: 61  LLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR---SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 65.5 bits (161), Expect = 3e-13
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 45/145 (31%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH AA+ G+    ++ L S  A+     ++ ++++G TPL++AA++GHA IV+ +L    
Sbjct: 13  LHNAAKNGHAE-EVKKLLSKGAD-----VNARSKDGNTPLHLAAKNGHAEIVKLLLAK-- 64

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
              A + AR+         K G                       +T  H A   GH ++
Sbjct: 65  --GADVNARS---------KDG-----------------------NTPEHLAKKNGHHEI 90

Query: 244 VNFLLEIDSNL-AKIARNNGKTVLH 267
           V  L    +++ A+          H
Sbjct: 91  VKLLDAKGADVNAR--SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.5 bits (143), Expect = 8e-11
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 324 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
                 GNT LH A K G  + V+ LLS  G DVN+ +K G +PL +A K G+ E+  LL
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

Query: 384 KEAGA 388
              GA
Sbjct: 62  LAKGA 66

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++  K G+  LHLAA+ G+   ++++L +  A+     ++ ++++G TP ++A ++GH
Sbjct: 34  DVNARSKDGNTPLHLAAKNGHAE-IVKLLLAKGAD-----VNARSKDGNTPEHLAKKNGH 87

Query: 172 ALIVEEMLQH 181
             IV+ +   
Sbjct: 88  HEIVKLLDAK 97

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  101 bits (254), Expect = 1e-25
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNN-GKTVLHSAARMGHLEVVKALVSK--D 285
             L  AA  G  D V  L+   +N A + A++  G T L+ A   GHLE+V+ L+    D
Sbjct: 16  KKLLEAARAGQDDEVRILM---ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
            +     D  G T LH+A    + +I   L++    V   +D  G TA  I+I  G   +
Sbjct: 73  VNA---VDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDL 128

Query: 346 VRCLLSI 352
              L  +
Sbjct: 129 AEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.5 bits (239), Expect = 2e-23
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 260 NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
           ++    L  AAR G  + V+ L++   D +     D+ G T L++A    + +IV  L++
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNA---KDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
               V    D  G T LH+A   G  +I   LL   G DVN+ +K G++  D++   GN 
Sbjct: 69  NGADVNA-VDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNE 126

Query: 378 ELFSLL 383
           +L  +L
Sbjct: 127 DLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 86.3 bits (215), Expect = 3e-20
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 12/143 (8%)

Query: 147 EAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQ 204
                      +    L  AA +G    V  ++ +     A + A++  G    ++A   
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAH 57

Query: 205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNG 262
           GHLE+++ LL    + V   D    T LH AA  GH+++   LL    + A +      G
Sbjct: 58  GHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLL---KHGADVNAQDKFG 113

Query: 263 KTVLHSAARMGHLEVVKALVSKD 285
           KT    +   G+ ++ + L   +
Sbjct: 114 KTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
                 +     L  A + G+   VR L++  G DVN+ ++ G +PL +A   G+ E+  
Sbjct: 6   HHHHHGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 382 LLKEAGA 388
           +L + GA
Sbjct: 65  VLLKNGA 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 87.8 bits (219), Expect = 2e-21
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 6/89 (6%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 287
           T LH AA  GH++VV  LLE  +++      NG+T LH AAR GHLEVVK L+    D +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELI 316
                DK G+T LH+A +  + ++V  L+
Sbjct: 63  AK---DKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 84.7 bits (211), Expect = 3e-20
 Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
           NG    H+AA+ GHLEV+K LL    + V   D +  T LH AA  GH++VV  LLE  +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 253 NLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
           ++      NG+T LH AAR GHLEVVK L+  
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 76.6 bits (190), Expect = 2e-17
 Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 36/128 (28%)

Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
           NG+T LH AAR GHLEVVK L+                       G + +          
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA---------------------GADVNA--------- 30

Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
                +D  G T LH+A + G  ++V+ LL   G DVN+ +K G +PL +A + G+ E+ 
Sbjct: 31  -----KDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVV 84

Query: 381 SLLKEAGA 388
            LL EAGA
Sbjct: 85  KLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.4 bits (153), Expect = 2e-12
 Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 12/93 (12%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLAAR G+L  V+++L    A+     ++ K++ G TPL++AA +GH  +V+ +L+   
Sbjct: 6   LHLAARNGHLE-VVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-- 57

Query: 184 LETASIPAR--NGYDSFHVAAKQGHLEVLKELL 214
              A + A+  NG    H+AA+ GHLEV+K LL
Sbjct: 58  --GADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.6 bits (112), Expect = 7e-07
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 6/70 (8%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           + ++  K G   LHLAAR G+L  V+++L    A+     ++ K++ G TPL++AA +GH
Sbjct: 27  DVNAKDKNGRTPLHLAARNGHLE-VVKLLLEAGAD-----VNAKDKNGRTPLHLAARNGH 80

Query: 172 ALIVEEMLQH 181
             +V+ +L+ 
Sbjct: 81  LEVVKLLLEA 90

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 87.6 bits (218), Expect = 4e-21
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
            +   H      LV +    G          L  A +   +D V  L+     V   +D 
Sbjct: 1   GSSHHHHHHSSGLVPR----GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
            G+T LH+A + G  ++V+ LL   G DV + +K G++  D++   GN +L  +L+
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 86.9 bits (216), Expect = 9e-21
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 201 AAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN 260
            +   H      L+    ++           L  AA  G  D V  L+   +++      
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 261 NGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 312
           NG T LH AAR GHLEVVK L+    D       DK G+TA  +++   NED+ 
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXAQ---DKFGKTAFDISIDNGNEDLA 106

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 235 AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 292
            ++  H    + L+      + +  ++    L  AAR G  + V+ L++   D +     
Sbjct: 1   GSSHHHHHHSSGLV---PRGSHM-GSDLGKKLLEAARAGQDDEVRILMANGADVAA---K 53

Query: 293 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
           DK G T LH+A +  + ++V  L+     V   +D  G TA  I+I  G   +   L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 46/155 (29%)

Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
            +   +       L    ++           +    L  AA +G    V  ++ +     
Sbjct: 1   GSSHHHHH-HSSGLVPRGSH--------MGSDLGKKLLEAARAGQDDEVRILMAN----G 47

Query: 187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF 246
           A + A++                                   ST LH AA  GH++VV  
Sbjct: 48  ADVAAKDKNG--------------------------------STPLHLAARNGHLEVVKL 75

Query: 247 LLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
           LLE  +++       GKT    +   G+ ++ + L
Sbjct: 76  LLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.4 bits (142), Expect = 9e-11
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 12/92 (13%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AARAG     + IL +  A+     ++ K++ G TPL++AA +GH  +V+ +L+   
Sbjct: 28  LLEAARAGQDD-EVRILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLLLEA-- 79

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKEL 213
              A + A++  G  +F ++   G+ ++ + L
Sbjct: 80  --GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 76.2 bits (187), Expect = 2e-15
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 292 TDKKGQTALHMAVKGQNEDIV--LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
             +  +TALH+AV+  +   +  ++ +  +   L  +  KG+TALH        + +  L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KL 223

Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 394
           L      +   N++GE+PLD+A++L +     LL +A +     H
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 258 ARNNGKTVLHSAARMG---HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 314
                +T LH A R      L +V  LV    +   +   KG TALH      N + +  
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNAECLKL 223

Query: 315 LIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
           L+R      +    +  G T L IA +         L 
Sbjct: 224 LLRGKASIEIA---NESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 15/102 (14%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLA R+ + + +  I+     N     L K+  +G T L+    + +A  ++ +L+   
Sbjct: 173 LHLAVRSVDRTSLH-IVDFLVQNSGN--LDKQTGKGSTALHYCCLTDNAECLKLLLRG-- 227

Query: 184 LETASIPARN--GYDSFHVAAKQGHLEVLKELL-----GEFP 218
              ASI   N  G     +A +  H    +ELL     G F 
Sbjct: 228 --KASIEIANESGETPLDIAKRLKHEH-CEELLTQALSGRFN 266

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 186 TASIPARNGYD----SFHVAAKQGHLEVLK--ELLGEFPNLVMTTDLSCSTALHTAAAQG 239
           T  IP  NG++    + H+A +      L   + L +    +       STALH      
Sbjct: 157 TEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTD 216

Query: 240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 282
           + + +  LL   +++ +IA  +G+T L  A R+ H    + L 
Sbjct: 217 NAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 8/135 (5%)

Query: 123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
            L  A +  ++  +++          K  L+  ++  ET L++A  S     +  ++  +
Sbjct: 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH-IVDFL 191

Query: 183 NLETASIPARN--GYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQ 238
              + ++  +   G  + H      + E LK LL       +    + S  T L  A   
Sbjct: 192 VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA---NESGETPLDIAKRL 248

Query: 239 GHIDVVNFLLEIDSN 253
            H      L +  S 
Sbjct: 249 KHEHCEELLTQALSG 263

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.9 bits (176), Expect = 5e-14
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 295 KGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 352
             +  LH+AVK  N+    +++ I  +   L  +   GNTALH A    +   ++ LL  
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 353 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
               V ++N+AGE+ LD+A K  + E   LL++A
Sbjct: 249 -RALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 258 ARNNGKTVLHSAARMGH---LEVVKALV--SKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
           A+   + VLH A ++ +   L +V  ++               G TALH A      D +
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA---KAADGNTALHYAALYNQPDCL 242

Query: 313 LELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
             L++       +   +  G TAL IA KK   +    L
Sbjct: 243 KLLLKGRALVGTV---NEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAE 168
            +            +L  A    +L  V+E   +                 E  L++A +
Sbjct: 140 VEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVK 199

Query: 169 SGHA---LIVEEMLQHMNLETASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMT 223
             +     +V+ ++Q+       + A+  +G  + H AA     + LK LL +   LV T
Sbjct: 200 VANQASLPLVDFIIQNG----GHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGT 254

Query: 224 TDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
            + +  TAL  A  + H +    L +  + 
Sbjct: 255 VNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 329 KGNTALHIAIKKGRTQIVR--CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
                LH+A+K      +     +   G  +++    G + L  A      +   LL + 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 387 GAAHSKDHGKPPSATKQLKQTVSDI 411
            A              +  +T  DI
Sbjct: 249 RA--------LVGTVNEAGETALDI 265

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 66.0 bits (160), Expect = 1e-11
 Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 5/167 (2%)

Query: 262 GKTVLHSAARMGHLEV-VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 320
           G  +  ++     L     AL            +   T L  A    +      L++   
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
           +V    D+ G   LH A   G T +    L   G D+ + +  G  PL +A +  N ++ 
Sbjct: 260 NV-NQADSAGRGPLHHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIV 317

Query: 381 SLLKEAGA-AHSKDHGKPPSAT-KQLKQTVSDIKHDVQSQLQQSRQT 425
           +LL+ A         G+    T   + +  S +  D   +L +    
Sbjct: 318 TLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHD 364

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 51.3 bits (122), Expect = 5e-07
 Identities = 39/198 (19%), Positives = 60/198 (30%), Gaps = 12/198 (6%)

Query: 67  IDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHL 126
           + K P  RG    +   RG          +  R  S     E           G L    
Sbjct: 148 LTKLPEIRGRRGGRGRPRG-QPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRA 206

Query: 127 AARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLET 186
           +    +L  + + L    A+ A        Q+  TPL  A  +   L  E +LQ+     
Sbjct: 207 SGHPPSLPTMADAL----AHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG---- 258

Query: 187 ASIPAR--NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVV 244
           A++      G    H A   GH  +    L    + +   D      L  A    + D+V
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIV 317

Query: 245 NFLLEIDSNLAKIARNNG 262
             L       A+ A+   
Sbjct: 318 TLLRLAKMREAEAAQGQA 335

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGH 171
           N +     G   LH A   G+ + +  +     A+     L  ++ EG  PL +A E+ +
Sbjct: 260 NVNQADSAGRGPLHHATILGH-TGLACLFLKRGAD-----LGARDSEGRDPLTIAMETAN 313

Query: 172 ALIVEEMLQHMNLETASIPARNGYDSF 198
           A IV  +      E  +   + G +++
Sbjct: 314 ADIVTLLRLAKMREAEAAQGQAGDETY 340

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 258 ARNNGKTVLHSAARM---GHLEVVKALV--SKDPSTGFRTDKKGQTALHMAVKGQNEDIV 312
           A+   + VLH A ++     L +V  ++               G TALH A      D +
Sbjct: 167 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD---AKAADGNTALHYAALYNQPDCL 223

Query: 313 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
             L++    V    +  G TAL IA KK   +    L
Sbjct: 224 KLLLKGRALV-GTVNEAGETALDIARKKHHKECEELL 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 65/469 (13%), Positives = 134/469 (28%), Gaps = 133/469 (28%)

Query: 15  EKQQSIRSV-TFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQSFHGVTIDKQPST 73
               ++R   T   +       E  Q F  E        L  M   +     T  +QPS 
Sbjct: 60  AVSGTLRLFWTLLSKQE-----EMVQKFVEEVLRINYKFL--MSPIK-----TEQRQPSM 107

Query: 74  RGVM---EKQKSFRG---FIEKQKSFRVVMERQLSFIGGGERKK-NKDSPGKRGDLQLH- 125
              M   ++ + +     F +   S R+    +L       R+   +  P K  ++ +  
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLKL-------RQALLELRPAK--NVLIDG 157

Query: 126 --------LAARA-------------------GNLSR---VMEILQSCDANEAKDLLSKK 155
                   +A                       N +    V+E+LQ        +  S+ 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLG 215
           +      L + +       +  +L+    E   +   N  ++          +       
Sbjct: 218 DHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNVQNA----------KAWNAFNL 264

Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL-----EIDSNLAKIARNNGKTVLHSAA 270
               L+ T     +  L +AA   HI + +  +     E+ S L K   +     L    
Sbjct: 265 SCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREV 322

Query: 271 RMGH---LEVVKALVSKDPST--GFR---TDKKGQTALHMAVKGQNEDIVLELIRPDPSV 322
              +   L ++   +    +T   ++    DK   T +  ++         ++     SV
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFD-RLSV 380

Query: 323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 382
                       HI         +  L+  + I            + V  KL     +SL
Sbjct: 381 FP-PS------AHIPTI------LLSLIWFDVIK--------SDVMVVVNKLHK---YSL 416

Query: 383 LKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHK 431
           ++                 KQ K++   I   +  +L+   +  + +H+
Sbjct: 417 VE-----------------KQPKESTISI-PSIYLELKVKLENEYALHR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 6e-07
 Identities = 41/354 (11%), Positives = 106/354 (29%), Gaps = 102/354 (28%)

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG 239
            HM+ ET     +               ++L      F       +  C           
Sbjct: 5   HHMDFETGEHQYQYK-------------DILSVFEDAF-----VDNFDCK---------- 36

Query: 240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT-----DK 294
             DV +                 K++L         E+   ++SKD  +G          
Sbjct: 37  --DVQDMP---------------KSILSKE------EIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 295 KGQTALHMAVKG---QNEDIVLELIRP---DPSVLKLE----------DNKGNTALHIAI 338
           K +  +   V+     N   ++  I+     PS++             DN+     +++ 
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 339 KKGRTQIVRCLLSI---EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH----S 391
            +   ++ + LL +   + + ++ +  +G++ +   +   + ++    K           
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKV--QCKMDFKIFWLNLK 190

Query: 392 KDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKL-HISGLNNA--- 447
             +  P +  + L++ +  I  +  S+   S     ++H I  +L++L       N    
Sbjct: 191 NCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 448 ---INSSTVVA-------VLIAT----VAFAAIFTVPGQY-VEEKTEGFSLGQA 486
              + ++           +L+ T    V             ++  +   +  + 
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 7e-07
 Identities = 46/318 (14%), Positives = 93/318 (29%), Gaps = 111/318 (34%)

Query: 1   MIMEKQSSFRARTMEKQQSIRSVTFEKQPSIRRVMEKQQSFNGESTDKPPSALGPMEKQQ 60
           +I E      A       + + V  +K   +  ++E   S N          L P E ++
Sbjct: 332 IIAESIRDGLATW----DNWKHVNCDK---LTTIIES--SLN---------VLEPAEYRK 373

Query: 61  SFHGVTI--DKQPSTRGVMEKQKSFRGFIEKQKSFRVVME-RQLSFIGGGERKKNKDSPG 117
            F  +++          ++         + K     VV +  + S +        K    
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLV-------EKQP-- 421

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVE- 176
           K   + +               +          L  K   E E  L       H  IV+ 
Sbjct: 422 KESTISIPS-------------IY---------LELKVKLENEYAL-------HRSIVDH 452

Query: 177 -EMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLK--ELLGEFPNLVMTTDLS------ 227
             + +  + +    P  + Y   H+     HL+ ++  E +  F  + +  D        
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMTLFRMVFL--DFRFLEQKI 507

Query: 228 --CSTALHTAAA-----------QGHI------------DVVNFLLEIDSNLAK------ 256
              STA + + +           + +I             +++FL +I+ NL        
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 257 --IARNN-GKTVLHSAAR 271
             IA     + +   A +
Sbjct: 568 LRIALMAEDEAIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	630
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.81
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.81
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.74
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.62
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.58

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.6e-44  Score=386.51  Aligned_cols=318  Identities=27%  Similarity=0.361  Sum_probs=236.7

Q ss_pred             cccccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 006802           61 SFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEIL  140 (630)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll  140 (630)
                      ..+|++++.++..+.++++.+...|+.+..+.+.             +.+.+++..+..|.||||+|++.|+.+++++|+
T Consensus        67 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-------------~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  133 (437)
T 1n11_A           67 LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL-------------ENNANPNLATTAGHTPLHIAAREGHVETVLALL  133 (437)
T ss_dssp             HHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHH-------------HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-------------hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3455566666666666666666666555444221             123455566666666666666666666666666


Q ss_pred             HhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q 006802          141 QSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL  220 (630)
Q Consensus       141 ~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~  220 (630)
                      +.+..      .+..+..|.||||+|+..|+.+++++|+++  +.+.+..+..|.||||+|+..|+.+++++|++.+.+ 
T Consensus       134 ~~~~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-  204 (437)
T 1n11_A          134 EKEAS------QACMTKKGFTPLHVAAKYGKVRVAELLLER--DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-  204 (437)
T ss_dssp             HTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-
T ss_pred             hCCCC------CcCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-
Confidence            65442      344566777777777777777777777776  445566677778888888888888888888877766 


Q ss_pred             cccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchh
Q 006802          221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL  300 (630)
Q Consensus       221 ~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  300 (630)
                      ....+..|.||||+|+..|+.+++++|++.|.+. +..+..|.||||+|+..|+.+++++|++.+++.... +..|.|||
T Consensus       205 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L  282 (437)
T 1n11_A          205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPL  282 (437)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTCCCHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC-CCCCCCHH
Confidence            3455667788888888888888888888887775 566777888888888888888888888888777654 77888888


Q ss_pred             hhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHH
Q 006802          301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF  380 (630)
Q Consensus       301 h~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv  380 (630)
                      |+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.++|++|++ .|+++|.+|..|.||||+|+..|+.+++
T Consensus       283 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~~~iv  360 (437)
T 1n11_A          283 HLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIV  360 (437)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCChHHHH
Confidence            8888888888888888887765 7788888888888888888888888888 7888888888888888888888888888


Q ss_pred             HHHHHcCCCCcccCCCCCchHHHH
Q 006802          381 SLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       381 ~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      ++|+++|+++...+..+.++....
T Consensus       361 ~~Ll~~ga~~~~~~~~g~t~l~~A  384 (437)
T 1n11_A          361 TLLLKNGASPNEVSSDGTTPLAIA  384 (437)
T ss_dssp             HHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHH
Confidence            888888888888777777776553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-43  Score=379.77  Aligned_cols=315  Identities=27%  Similarity=0.359  Sum_probs=248.1

Q ss_pred             cccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHh
Q 006802           63 HGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQS  142 (630)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~  142 (630)
                      .|++++..+..|.++++.+...|.++..+.+.             +.+.+++..+..|.||||+||+.|+.++|++|++.
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll-------------~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~   69 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLL-------------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN   69 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHH-------------HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHH-------------HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            56777777888888888888888877766432             23567777888888888888888888888888887


Q ss_pred             cChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc
Q 006802          143 CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVM  222 (630)
Q Consensus       143 ~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~  222 (630)
                      +.+      ++.++..|.||||+|+..|+.++|++|+++  +.+.+..+..|.||||+|+..|+.+++++|++.+... .
T Consensus        70 g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~  140 (437)
T 1n11_A           70 KAK------VNAKAKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-A  140 (437)
T ss_dssp             TCC------SSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-C
T ss_pred             CCC------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-c
Confidence            654      567788888888888888888888888887  4566777888888888888888888888888887763 4


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhh
Q 006802          223 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM  302 (630)
Q Consensus       223 ~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  302 (630)
                      ..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+.++... +..|.||||+
T Consensus       141 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~  218 (437)
T 1n11_A          141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHI  218 (437)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCC-CTTCCCHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCHHHH
Confidence            56677888888888888888888888888876 667788888888888888888888888888877654 7788888888


Q ss_pred             hccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHH
Q 006802          303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL  382 (630)
Q Consensus       303 Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~  382 (630)
                      |+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++
T Consensus       219 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  296 (437)
T 1n11_A          219 AAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADV  296 (437)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            88888888888888887765 7778888888888888888888888888 788888888888888888888888888888


Q ss_pred             HHHcCCCCcccCCCCCchHHH
Q 006802          383 LKEAGAAHSKDHGKPPSATKQ  403 (630)
Q Consensus       383 L~~~ga~~~~~~~~~~~~~~~  403 (630)
                      |+++|++....+..+.++...
T Consensus       297 Ll~~g~~~~~~~~~g~t~L~~  317 (437)
T 1n11_A          297 LIKHGVMVDATTRMGYTPLHV  317 (437)
T ss_dssp             HHHHTCCTTCCCSSCCCHHHH
T ss_pred             HHhCCccCCCCCCCCCCHHHH
Confidence            888888887777777666543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.7e-42  Score=345.58  Aligned_cols=264  Identities=28%  Similarity=0.383  Sum_probs=242.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcC-CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcH
Q 006802          119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK-NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (630)
Q Consensus       119 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~  197 (630)
                      +|.||||.|++.|+.++|++|++.+.+      ++.. +..|.||||+|+..|+.+++++|+++  +.+++..+.+|.||
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~   75 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC------cccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCH
Confidence            578999999999999999999998764      3444 78899999999999999999999998  56677788999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhh----------ccCCCcHHH
Q 006802          198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA----------RNNGKTVLH  267 (630)
Q Consensus       198 Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~----------d~~g~tpLh  267 (630)
                      ||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|+++ +..          +..|.||||
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T 1wdy_A           76 FLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHH
Confidence            9999999999999999999988 4567899999999999999999999999999887 333          778999999


Q ss_pred             HHHHcCCHHHHHHHHhC-CCCCCcccCCCCCchhhhhccCCC----HHHHHHhhcCCCCcccccCCCCChHHHHHHHhCc
Q 006802          268 SAARMGHLEVVKALVSK-DPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  342 (630)
Q Consensus       268 ~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~Aa~~g~----~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~  342 (630)
                      .|+..|+.+++++|++. +.++... |..|.||||+|+..++    .+++++|++.+.++ +.+|..|+||||+|+..|+
T Consensus       154 ~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~  231 (285)
T 1wdy_A          154 DAAEKGHVEVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHhcCCCCCcc-CCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCC
Confidence            99999999999999998 7776654 8999999999999999    89999999998876 8999999999999999999


Q ss_pred             HHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 006802          343 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH  394 (630)
Q Consensus       343 ~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~  394 (630)
                      .+++++|++..|++++.+|..|.||||+|+..++.+++++|+++|+++...+
T Consensus       232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            9999999987899999999999999999999999999999999999987543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=338.82  Aligned_cols=265  Identities=22%  Similarity=0.288  Sum_probs=208.9

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcChhh-----hhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccC
Q 006802          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANE-----AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP  190 (630)
Q Consensus       116 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~  190 (630)
                      ....|.|+||+||..|+.+.+..++...+...     ....++..|..|+||||+|+..|+.++|++|++.  +.+++..
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~   88 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNII   88 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEE
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCc
Confidence            45679999999999999888888776543210     0122567899999999999999999999999997  4667888


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHH
Q 006802          191 ARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA  270 (630)
Q Consensus       191 ~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa  270 (630)
                      +.+|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.|+++.  .+.+|.||||+|+
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~  165 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAA  165 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHH
Confidence            99999999999999999999999999887 56778999999999999999999999999998863  3556999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHh
Q 006802          271 RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  350 (630)
Q Consensus       271 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll  350 (630)
                      ..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++.++++ + .|..|+||||+|+..|+.+++++|+
T Consensus       166 ~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll  242 (285)
T 3d9h_A          166 RRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELACLLM  242 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999998765 999999999999999999999999998876 5 4889999999999999999999999


Q ss_pred             cccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCc
Q 006802          351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA-GAAHS  391 (630)
Q Consensus       351 ~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~-ga~~~  391 (630)
                      + .|++++.+|..|+||||+|+  ++.+++++|+++ |++..
T Consensus       243 ~-~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          243 D-FGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             H-TTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             H-CCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            9 89999999999999999999  567899999998 66643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.7e-39  Score=336.48  Aligned_cols=289  Identities=21%  Similarity=0.249  Sum_probs=244.8

Q ss_pred             ccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCC-CCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhh
Q 006802           75 GVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGK-RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS  153 (630)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~  153 (630)
                      .++++.+...|.++..+.+.             +.+.+++.++. .|.||||+||..|+.++|++||+.+..      ++
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL-------------~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~------~~   86 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLL-------------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PV   86 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-------------HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TT
T ss_pred             ChHHHHHHHcCCHHHHHHHH-------------HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc------hh
Confidence            46677777777777666332             24577777765 589999999999999999999998764      56


Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---------ccC
Q 006802          154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLV---------MTT  224 (630)
Q Consensus       154 ~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~---------~~~  224 (630)
                      .++..+.+|++.++..++.+++..+++.  ..+++..+..|.||||+|+..|+.+++++|++.+.++.         ...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~  164 (337)
T 4g8k_A           87 LRKKNGATPFILAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL  164 (337)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----C
T ss_pred             hhccCCCchhHHHHhcccchhhHHhhhc--cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccc
Confidence            7788899999999999999999999887  55677888999999999999999999999999887643         234


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhc-CCchhhhhccCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcccCCCCCch
Q 006802          225 DLSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGKTVLHSAARMGH----LEVVKALVSKDPSTGFRTDKKGQTA  299 (630)
Q Consensus       225 d~~g~tpL~~Aa~~g~~e~v~~LL~~-~~~~~~~~d~~g~tpLh~Aa~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~  299 (630)
                      +..|.||||+|+..|+.+++++|+++ |+++ +..|..|.|++|.++..++    .+++++|++.+++++.. |..|+||
T Consensus       165 ~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~-d~~g~t~  242 (337)
T 4g8k_A          165 RKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTP  242 (337)
T ss_dssp             TTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC-CGGGCCH
T ss_pred             cCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc-CCCCCCH
Confidence            56789999999999999999999965 7776 7788999999998886554    46889999999998765 8999999


Q ss_pred             hhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHH
Q 006802          300 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL  379 (630)
Q Consensus       300 Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~i  379 (630)
                      ||+|+..|+.++++.|++.....++.+|.+|+||||+|++.|+.++|++|++ .|+++|..     +||++|+..++.++
T Consensus       243 L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GAd~n~~-----~~L~~A~~~~~~~i  316 (337)
T 4g8k_A          243 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCG-----DLVMTARRNYDHSL  316 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSCSSTTC-----CHHHHHHHTTCHHH
T ss_pred             HHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-----CHHHHHHHcCCHHH
Confidence            9999999999999999987665669999999999999999999999999999 89988754     59999999999999


Q ss_pred             HHHHHHcCCCCcc
Q 006802          380 FSLLKEAGAAHSK  392 (630)
Q Consensus       380 v~~L~~~ga~~~~  392 (630)
                      +++|+++||+++.
T Consensus       317 v~~Ll~~GA~~d~  329 (337)
T 4g8k_A          317 VKVLLSHGAKEDF  329 (337)
T ss_dssp             HHHHHHTTCCC--
T ss_pred             HHHHHHCcCCCCC
Confidence            9999999998764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-40  Score=352.29  Aligned_cols=265  Identities=20%  Similarity=0.265  Sum_probs=229.5

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCC-CCCCcHHHHHHHhCCHHHHHHHHhc------CCccc
Q 006802          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKN-QEGETPLYVAAESGHALIVEEMLQH------MNLET  186 (630)
Q Consensus       114 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n-~~g~TpLh~Aa~~g~~eiv~~LL~~------~~~~~  186 (630)
                      ..++..|.||||.||..|+ ++++.|+..        .++..| ..|.||||+|+..|+.+++++|+..      ..+.+
T Consensus        88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--------~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~  158 (373)
T 2fo1_E           88 TEPEPESPIKLHTEAAGSY-AITEPITRE--------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD  158 (373)
T ss_dssp             ------CCCHHHHHHHSSS-CCCSCCSTT--------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC
T ss_pred             cCCCCCCccHHHHHhcCCc-hHHHHhccc--------cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            4568899999999999554 777776532        256677 7899999999999999999888731      12567


Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcC---CchhhhhccCCC
Q 006802          187 ASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID---SNLAKIARNNGK  263 (630)
Q Consensus       187 ~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~---~~~~~~~d~~g~  263 (630)
                      ++..|.+|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.+   .++ +..|.+|.
T Consensus       159 vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~  236 (373)
T 2fo1_E          159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGM  236 (373)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSC
T ss_pred             CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCC
Confidence            788899999999999999999999999999988 4567889999999999999999999999987   344 66789999


Q ss_pred             cHHHHHHHcC---CHHHHHHHHhCCCCCCc-------ccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChH
Q 006802          264 TVLHSAARMG---HLEVVKALVSKDPSTGF-------RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA  333 (630)
Q Consensus       264 tpLh~Aa~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp  333 (630)
                      ||||+|+..|   +.+++++|++.++++..       ..|..|.||||+|+..|+.+++++|++.++..++.+|.+|+||
T Consensus       237 t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~Tp  316 (373)
T 2fo1_E          237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP  316 (373)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCH
T ss_pred             CHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCH
Confidence            9999999998   89999999999998765       2467899999999999999999999998755669999999999


Q ss_pred             HHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          334 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       334 Lh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      ||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       317 L~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          317 IMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            999999999999999999 89999999999999999999999999999999998863

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.4e-39  Score=334.20  Aligned_cols=265  Identities=28%  Similarity=0.368  Sum_probs=235.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCC-CCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQ-EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~-~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~  195 (630)
                      +..|+|+||.||+.|+.++|++||+.|.+      ++.++. .|+||||+|+..|+.++|++||++  +..++..+..+.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~   93 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGA   93 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCC
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCC
Confidence            44578999999999999999999999875      455554 599999999999999999999998  567788899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchh---------hhhccCCCcHH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA---------KIARNNGKTVL  266 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~---------~~~d~~g~tpL  266 (630)
                      ++++.++..++..++..+++.+.+ .+..|..|.||||+|+..|+.+++++|+++|+++.         ...+..|.|||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L  172 (337)
T 4g8k_A           94 TPFILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL  172 (337)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred             chhHHHHhcccchhhHHhhhccch-hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence            999999999999999999999888 56789999999999999999999999999998762         22355799999


Q ss_pred             HHHHHcCCHHHHHHHHh-CCCCCCcccCCCCCchhhhhccCCC----HHHHHHhhcCCCCcccccCCCCChHHHHHHHhC
Q 006802          267 HSAARMGHLEVVKALVS-KDPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  341 (630)
Q Consensus       267 h~Aa~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~Aa~~g~----~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g  341 (630)
                      |+|+..|+.++|++|++ .+.+++.. |..|.|+||.++..+.    ..++++|++.++++ |.+|.+|+||||+|+..|
T Consensus       173 ~~A~~~g~~~~v~~LL~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~  250 (337)
T 4g8k_A          173 MDAAEKGHVEVLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKK  250 (337)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHhccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhh
Confidence            99999999999999996 47777654 9999999998765433    45788899998876 899999999999999999


Q ss_pred             cHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 006802          342 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  392 (630)
Q Consensus       342 ~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~  392 (630)
                      +.++++.|++..|+++|.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus       251 ~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          251 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             CHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             hhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            999999999877999999999999999999999999999999999998754

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9.4e-39  Score=333.93  Aligned_cols=278  Identities=26%  Similarity=0.304  Sum_probs=248.0

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCC
Q 006802          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG  194 (630)
Q Consensus       115 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g  194 (630)
                      ..+..|.|+||.||+.|+.+.|+.|+....     ..++.+|..|.||||+|+..|+.++|++|+++  +.+++..+..|
T Consensus        19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g   91 (351)
T 3utm_A           19 LTGEYKKDELLEAARSGNEEKLMALLTPLN-----VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGG   91 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHCCTTT-----TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTC
T ss_pred             eeccccchhHHHHHHcCCHHHHHHHHHhcC-----CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCC
Confidence            345667899999999999999999997643     23678899999999999999999999999998  56778889999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHH-----
Q 006802          195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA-----  269 (630)
Q Consensus       195 ~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~A-----  269 (630)
                      .||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.+|+|.|     
T Consensus        92 ~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~  169 (351)
T 3utm_A           92 LVPLHNACSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPEL  169 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhh
Confidence            9999999999999999999999888 4567889999999999999999999999999987 67788899987765     


Q ss_pred             ----------------HHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccC---CCHHHHHHhhcCCCCcccccCCCC
Q 006802          270 ----------------ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKG  330 (630)
Q Consensus       270 ----------------a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~n~~d~~G  330 (630)
                                      +..++.+.+..++........ .+..|.||||+|+..   +..+++++|++.+.++ +.+|.+|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g  247 (351)
T 3utm_A          170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDF  247 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTC
T ss_pred             HHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCC
Confidence                            566777788888877654443 478899999999999   5589999999999876 8899999


Q ss_pred             ChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          331 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       331 ~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      +||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|+++...+..+.++....
T Consensus       248 ~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          248 MTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            999999999999999999999 8999999999999999999999999999999999999999988888877654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-39  Score=344.01  Aligned_cols=267  Identities=17%  Similarity=0.198  Sum_probs=230.6

Q ss_pred             ccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc
Q 006802          110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI  189 (630)
Q Consensus       110 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~  189 (630)
                      +.+.+..|..|.||||+||..|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.++|++|++++.    ..
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~   79 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS------PTIQNRFGCTALHLACKFGCVDTAKYLASVGE----VH   79 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----Cc
Confidence            456677889999999999999999999999998764      67889999999999999999999999999843    33


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCccc----------------cCCCCCChHHHHHHHcC--CHHHHHHH
Q 006802          190 PARNGYDSFHVAAKQGHLEVLKELLGE----FPNLVM----------------TTDLSCSTALHTAAAQG--HIDVVNFL  247 (630)
Q Consensus       190 ~~~~g~t~Lh~A~~~g~~eiv~~Ll~~----~~~~~~----------------~~d~~g~tpL~~Aa~~g--~~e~v~~L  247 (630)
                      .+.+|.||||+|+..|+.+++++|++.    +.....                ..|..|.||||+|+..|  +.+++++|
T Consensus        80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~L  159 (364)
T 3ljn_A           80 SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL  159 (364)
T ss_dssp             CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHH
Confidence            445899999999999999999999998    554221                16778999999999999  99999999


Q ss_pred             HhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCC-----CCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCc
Q 006802          248 LEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS-----TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV  322 (630)
Q Consensus       248 L~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~-----~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~  322 (630)
                      +++|+++ +..|..|.||||+|+..|+.+++++|++.+++     ++. .|..|.||||+|+..|+.+++++|++.++++
T Consensus       160 l~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~  237 (364)
T 3ljn_A          160 VQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY-ANKQGNSHLHWAILINWEDVAMRFVEMGIDV  237 (364)
T ss_dssp             HHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC-CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT
T ss_pred             HHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999987 77899999999999999999999999999888     554 4899999999999999999999999999886


Q ss_pred             ccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCccc------------ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS------------LNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       323 ~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~------------~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                       +.+|.+|+||||+|+..|+.+++++|++ .|++++.            .+..|.||++.|+..++.+.+..|+..+++.
T Consensus       238 -~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~  315 (364)
T 3ljn_A          238 -NMEDNEHTVPLYLSVRAAMVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE  315 (364)
T ss_dssp             -TCCCTTSCCHHHHHHHTCCHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCHHHHHHHhChHHHHHHHHH-cCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHH
Confidence             8999999999999999999999999999 5665433            5678899999999998877777777666553

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.1e-37  Score=325.80  Aligned_cols=289  Identities=24%  Similarity=0.241  Sum_probs=245.4

Q ss_pred             ccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHh
Q 006802           73 TRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLL  152 (630)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l  152 (630)
                      .+.+.++.+...|..+..+.+       +     ...+.+++.+|..|.||||+||..|+.++|++|++.+.+      +
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~l-------l-----~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~   84 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMAL-------L-----TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD------V   84 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHH-------C-----CTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC------T
T ss_pred             ccchhHHHHHHcCCHHHHHHH-------H-----HhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------C
Confidence            334555556666655544422       2     135677888999999999999999999999999998764      6


Q ss_pred             hcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHH
Q 006802          153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL  232 (630)
Q Consensus       153 ~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL  232 (630)
                      +.+|..|.||||+|+..|+.+++++|+++  +.+++..+..|.||||+|+..|+.+++++|++.+.+ +...+..|.||+
T Consensus        85 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l  161 (351)
T 3utm_A           85 HAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAV  161 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcch
Confidence            78899999999999999999999999998  566778889999999999999999999999999988 456788898887


Q ss_pred             HHH---------------------HHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHc---CCHHHHHHHHhCCCCC
Q 006802          233 HTA---------------------AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM---GHLEVVKALVSKDPST  288 (630)
Q Consensus       233 ~~A---------------------a~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~  288 (630)
                      ++|                     +..++.+.++.++..+... ...+..|.||||+|+..   +..+++++|++.+.++
T Consensus       162 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~  240 (351)
T 3utm_A          162 DMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV  240 (351)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred             HHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence            765                     5566777777777665443 44567899999999999   5589999999999998


Q ss_pred             CcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHH
Q 006802          289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL  368 (630)
Q Consensus       289 ~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL  368 (630)
                      +.. |..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||+
T Consensus       241 ~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~~g~tal  317 (351)
T 3utm_A          241 NEK-NKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAA  317 (351)
T ss_dssp             TCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             CCc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCChh
Confidence            765 899999999999999999999999999876 8999999999999999999999999999 8999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC
Q 006802          369 DVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       369 ~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      ++|    ..+++++|.+.+...
T Consensus       318 ~~a----~~~~~~~l~~~~~~~  335 (351)
T 3utm_A          318 QMG----NEAVQQILSESTPMR  335 (351)
T ss_dssp             HHS----CHHHHHHHHHC----
T ss_pred             hhh----hHHHHHHHHhccccc
Confidence            998    678999998887654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-37  Score=312.99  Aligned_cols=263  Identities=21%  Similarity=0.267  Sum_probs=229.5

Q ss_pred             cccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhc
Q 006802           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSP-GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK  154 (630)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~  154 (630)
                      ++++.+...|.++..+.+.             +.+.+++.. +..|.||||+|+..|+.+++++|++.+.+      ++.
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll-------------~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~   67 (285)
T 1wdy_A            7 HLLIKAVQNEDVDLVQQLL-------------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PVL   67 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTC
T ss_pred             hHHHHHHHcCCHHHHHHHH-------------HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------Ccc
Confidence            4556666666665554322             223556666 78899999999999999999999998764      567


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccC---------C
Q 006802          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTT---------D  225 (630)
Q Consensus       155 ~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~---------d  225 (630)
                      +|..|.||||+|+..|+.+++++|+++  +.+++..+..|.||||+|+..|+.+++++|++.+.+.....         +
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~  145 (285)
T 1wdy_A           68 RKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR  145 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhc
Confidence            889999999999999999999999998  56677788999999999999999999999999988754322         7


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhc-CCchhhhhccCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcccCCCCCchh
Q 006802          226 LSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGKTVLHSAARMGH----LEVVKALVSKDPSTGFRTDKKGQTAL  300 (630)
Q Consensus       226 ~~g~tpL~~Aa~~g~~e~v~~LL~~-~~~~~~~~d~~g~tpLh~Aa~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t~L  300 (630)
                      ..|.||||+|+..|+.+++++|++. |.++ +..|..|.||||.|+..|+    .+++++|++.+.+++.. |..|.|||
T Consensus       146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~-~~~g~t~L  223 (285)
T 1wdy_A          146 KGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPL  223 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHH
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc-CCCCCcHH
Confidence            7899999999999999999999998 7776 7788999999999999999    99999999999998765 89999999


Q ss_pred             hhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccC
Q 006802          301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK  362 (630)
Q Consensus       301 h~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~  362 (630)
                      |+|+..|+.+++++|++.....++.+|.+|+||||+|+..|+.+++++|++ .|++++.+|.
T Consensus       224 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~-~Ga~~~~~d~  284 (285)
T 1wdy_A          224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             HHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCcccc
Confidence            999999999999999995444459999999999999999999999999999 8999998874

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.7e-38  Score=315.23  Aligned_cols=246  Identities=20%  Similarity=0.265  Sum_probs=148.3

Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 006802          112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA  191 (630)
Q Consensus       112 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~  191 (630)
                      +++.+|.+|.||||+|+..|+...                          ....+...++.+++++|++.+. ......+
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~--------------------------~~~~~~~~~~~~~v~~Ll~~g~-~~~~~~d   54 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLE--------------------------TGNSEEEEDAPAVISDFIYQGA-SLHNQTD   54 (253)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             CCCCCCCCCCcHHHHHHhcccccc--------------------------ccchhhcCCChHHHHHHHHccC-CcccccC
Confidence            466778888888888888773100                          0011344556777777776621 1223345


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHH
Q 006802          192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR  271 (630)
Q Consensus       192 ~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~  271 (630)
                      ..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+.
T Consensus        55 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           55 RTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            6677777777777777777777776666 345566777777777777777777777777664446667777777777777


Q ss_pred             cCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       272 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      .|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             HTCSSHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            77777777777777776654 777788888888888888888888777665 7778888888888888888888888888


Q ss_pred             ccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 006802          352 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  388 (630)
Q Consensus       352 ~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga  388 (630)
                       .|++++.+|..|.||+++|+..|+.+++++|.....
T Consensus       212 -~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          212 -HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             -TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             -cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence             788888888888888888888888888888877643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.8e-38  Score=314.48  Aligned_cols=229  Identities=25%  Similarity=0.280  Sum_probs=169.0

Q ss_pred             hhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChH
Q 006802          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA  231 (630)
Q Consensus       152 l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tp  231 (630)
                      ++.+|..|.||||+|+..|+.-.                      ....+...++.+++++|++.++++....|..|.||
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~----------------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~   60 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLE----------------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA   60 (253)
T ss_dssp             -----------------------------------------------------------------------CCCTTSCCH
T ss_pred             CCCCCCCCCcHHHHHHhcccccc----------------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcH
Confidence            56778899999999998875310                      01125677899999999999999888789999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHH
Q 006802          232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI  311 (630)
Q Consensus       232 L~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~i  311 (630)
                      ||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..++.++
T Consensus        61 L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  139 (253)
T 1yyh_A           61 LHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM  139 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHH
Confidence            99999999999999999999987 77889999999999999999999999999884444559999999999999999999


Q ss_pred             HHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Q 006802          312 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  391 (630)
Q Consensus       312 v~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~  391 (630)
                      +++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++..
T Consensus       140 v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          140 LEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             HHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            99999998876 8899999999999999999999999999 899999999999999999999999999999999999999


Q ss_pred             ccCCCCCchHHHHH
Q 006802          392 KDHGKPPSATKQLK  405 (630)
Q Consensus       392 ~~~~~~~~~~~~l~  405 (630)
                      ..+..+.++.....
T Consensus       218 ~~d~~g~tpl~~A~  231 (253)
T 1yyh_A          218 ITDHMDRLPRDIAQ  231 (253)
T ss_dssp             CCCTTCCCHHHHHH
T ss_pred             ccccCCCCHHHHHH
Confidence            98888988877643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.8e-38  Score=317.92  Aligned_cols=255  Identities=20%  Similarity=0.173  Sum_probs=191.0

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCC
Q 006802          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR  192 (630)
Q Consensus       113 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~  192 (630)
                      ++.+|..|.||||+||+.|+.++|++|++.+...   ..++.+|..|.||||+|+..|+.++|++|+++  +.+++..+.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~   76 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAER   76 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCC
Confidence            4578999999999999999999999999987642   33788899999999999999999999999998  567788899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccc------------cCCCCCChHHHHHHHcCCHHHHH-HHHhcCCchhhhhc
Q 006802          193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVM------------TTDLSCSTALHTAAAQGHIDVVN-FLLEIDSNLAKIAR  259 (630)
Q Consensus       193 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~------------~~d~~g~tpL~~Aa~~g~~e~v~-~LL~~~~~~~~~~d  259 (630)
                      .|.||||+|+..|+.+++++|++.++....            .....+.++++.++..+....+. .+...+.++ +..+
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  155 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAEN  155 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT-TCCC
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC-CCcC
Confidence            999999999999999999999998865321            12234567777776665544333 333344443 6678


Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHH
Q 006802          260 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  339 (630)
Q Consensus       260 ~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~  339 (630)
                      ..|.||||+|+..|+.+++++|++.++++....+..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+.
T Consensus       156 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~  234 (282)
T 1oy3_D          156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALL  234 (282)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccCCCCHHHHHHH
Confidence            899999999999999999999999999988764456999999999999999999999998876 8899999999999999


Q ss_pred             hCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcC
Q 006802          340 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  375 (630)
Q Consensus       340 ~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~  375 (630)
                      .|+.+++++|++ +|++++.+|..|.|||++|....
T Consensus       235 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          235 RPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             SSCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred             cCCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            999999999998 89999999999999999987654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.8e-38  Score=309.94  Aligned_cols=233  Identities=23%  Similarity=0.272  Sum_probs=182.2

Q ss_pred             hhcCCCCCCcHHHHHHHhCCHHHHHHHHhc--CCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCC
Q 006802          152 LSKKNQEGETPLYVAAESGHALIVEEMLQH--MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCS  229 (630)
Q Consensus       152 l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~--~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~  229 (630)
                      ++.+|..|.||||+|+..|+.+++++|++.  ..+.+++..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCC
Confidence            355677777888888888888877777762  12345666777788888888888888888888887766 345677788


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCC----chhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhcc
Q 006802          230 TALHTAAAQGHIDVVNFLLEIDS----NLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK  305 (630)
Q Consensus       230 tpL~~Aa~~g~~e~v~~LL~~~~----~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~  305 (630)
                      ||||+|+..|+.+++++|++.++    ++ +..+..|.||||+|+..|+.+++++|++.++++....+..|.||||+|+.
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            88888888888888888888876    33 55677888888888888888888888888888776633788899999999


Q ss_pred             CCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 006802          306 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  385 (630)
Q Consensus       306 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~  385 (630)
                      .|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.++++.|.+
T Consensus       160 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            99999999999888776 8889999999999999999999999998 899999999999999999999999999998887


Q ss_pred             cCC
Q 006802          386 AGA  388 (630)
Q Consensus       386 ~ga  388 (630)
                      .++
T Consensus       238 ~~a  240 (241)
T 1k1a_A          238 RPA  240 (241)
T ss_dssp             ---
T ss_pred             CCC
Confidence            764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.4e-36  Score=300.04  Aligned_cols=221  Identities=29%  Similarity=0.344  Sum_probs=128.4

Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 006802          112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA  191 (630)
Q Consensus       112 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~  191 (630)
                      +.+.++..|.||||+||..|+.+++++|++.+.+      ++..+..|.||||+|+..|+.+++++|+++  +.+.+..+
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~   74 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN------IDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKD   74 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCC
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC------cCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCC
Confidence            4455666667777777777777777777666543      455566666666666666666666666665  33444555


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHH
Q 006802          192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR  271 (630)
Q Consensus       192 ~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~  271 (630)
                      ..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+.
T Consensus        75 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~  153 (237)
T 3b7b_A           75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAF  153 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHH
Confidence            556666666666666666666666654444455555556666666666666666665555554 4445555555555555


Q ss_pred             cCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       272 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      .|+.+++++|++.++++                                   +.+|..|+||||+|+..|+.+++++|++
T Consensus       154 ~~~~~~~~~Ll~~g~~~-----------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (237)
T 3b7b_A          154 SGCVDIAEILLAAKCDL-----------------------------------HAVNIHGDSPLHIAARENRYDCVVLFLS  198 (237)
T ss_dssp             HCCHHHHHHHHTTTCCT-----------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcCCCC-----------------------------------CCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence            55555555555554444                                   4445555555555555555555555555


Q ss_pred             ccCCCcccccCCCCCHHHHHHHcCCH
Q 006802          352 IEGIDVNSLNKAGESPLDVAEKLGNT  377 (630)
Q Consensus       352 ~~g~~in~~n~~G~TpL~~A~~~~~~  377 (630)
                       .|++++.+|..|.||||+|+..++.
T Consensus       199 -~gad~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          199 -RDSDVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             -TTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred             -cCCCCCccCCCCCCHHHHHHHHHHH
Confidence             4555555555555555555555544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.1e-37  Score=301.42  Aligned_cols=224  Identities=26%  Similarity=0.281  Sum_probs=137.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcC
Q 006802          160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQG  239 (630)
Q Consensus       160 ~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g  239 (630)
                      .||||.|+..|+.+++++|++.. ....+..+.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHcC
Confidence            34444444444444444444331 112233344444444444444444444444444433 2234445555555555555


Q ss_pred             CHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCC
Q 006802          240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD  319 (630)
Q Consensus       240 ~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~  319 (630)
                      +.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+
T Consensus        85 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g  162 (231)
T 3aji_A           85 XDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFYK  162 (231)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence            555555555555544 444555566666666666666666666665555443 566666666666666666666666666


Q ss_pred             CCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 006802          320 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  389 (630)
Q Consensus       320 ~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~  389 (630)
                      .++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|...++.+++++|.++|++
T Consensus       163 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          163 AST-NIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             CCc-cccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            554 6778888888888888888888888888 7888888888888888888888888888888888765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-36  Score=299.74  Aligned_cols=213  Identities=25%  Similarity=0.351  Sum_probs=167.6

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHH
Q 006802          188 SIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLH  267 (630)
Q Consensus       188 ~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh  267 (630)
                      +..+.+|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   82 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLH   82 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHH
Confidence            44555666666666666666666666666655 3445566677777777777777777777776665 455667777777


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHH
Q 006802          268 SAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR  347 (630)
Q Consensus       268 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~  347 (630)
                      +|+..|+.+++++|++.++......+..|.||||+|+..++.+++++|++.+.++ +.+|..|+||||+|+..|+.++++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~  161 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAE  161 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHH
Confidence            7777777777777777774333344777888888888888888888888877765 788999999999999999999999


Q ss_pred             HHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       348 ~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      +|++ .|++++..|..|.||||+|+..++.+++++|+++|++....+..+.++....
T Consensus       162 ~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          162 ILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA  217 (237)
T ss_dssp             HHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHS
T ss_pred             HHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            9999 8999999999999999999999999999999999999999888888887654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.3e-37  Score=324.31  Aligned_cols=231  Identities=25%  Similarity=0.274  Sum_probs=212.3

Q ss_pred             hhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChH
Q 006802          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA  231 (630)
Q Consensus       152 l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tp  231 (630)
                      .+..|..|.||||+|+..|+.++|++|+++  +.+++..+..|.||||+|+..|+.+++++|++.+++.   .+..|.||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~   87 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKP   87 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCH
Confidence            456688899999999999999999999998  5677888999999999999999999999999999853   34589999


Q ss_pred             HHHHHHcCCHHHHHHHHhc----CCchhhh-----------------hccCCCcHHHHHHHcC--CHHHHHHHHhCCCCC
Q 006802          232 LHTAAAQGHIDVVNFLLEI----DSNLAKI-----------------ARNNGKTVLHSAARMG--HLEVVKALVSKDPST  288 (630)
Q Consensus       232 L~~Aa~~g~~e~v~~LL~~----~~~~~~~-----------------~d~~g~tpLh~Aa~~g--~~~iv~~Ll~~~~~~  288 (630)
                      ||+|+..|+.+++++|++.    +.+. +.                 .|..|.||||+|+..|  +.+++++|++.++++
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~  166 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP  166 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence            9999999999999999999    7766 44                 7789999999999999  999999999999998


Q ss_pred             CcccCCCCCchhhhhccCCCHHHHHHhhcCCCCc----ccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCC
Q 006802          289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV----LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG  364 (630)
Q Consensus       289 ~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~----~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G  364 (630)
                      +.. |..|.||||+|+..|+.+++++|++.+++.    ++.+|..|+||||+|+..|+.++|++|++ .|++++..|..|
T Consensus       167 ~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g  244 (364)
T 3ljn_A          167 TAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEH  244 (364)
T ss_dssp             TCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTS
T ss_pred             ccc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCC
Confidence            765 899999999999999999999999988762    48999999999999999999999999999 899999999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          365 ESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       365 ~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      .||||+|+..|+.+++++|+++|++.
T Consensus       245 ~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          245 TVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             CCHHHHHHHhChHHHHHHHHHcCCch
Confidence            99999999999999999999999875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=6.9e-37  Score=302.73  Aligned_cols=231  Identities=23%  Similarity=0.280  Sum_probs=203.7

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 006802          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (630)
Q Consensus       114 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~  193 (630)
                      +.+|.+|.||||+||+.|+.+++++|++.....  +..++..|..|.||||+|+..|+.+++++|+++  +.+.+..+..
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~   78 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRH   78 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTT
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCC
Confidence            467899999999999999999999999732111  123678899999999999999999999999997  4667778899


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhc-cCCCcHHHHH
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPN---LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-NNGKTVLHSA  269 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~---~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d-~~g~tpLh~A  269 (630)
                      |.||||+|+..|+.+++++|++.++.   ..+..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHA  157 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHH
Confidence            99999999999999999999999873   35667889999999999999999999999999997 4445 7899999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHH
Q 006802          270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  349 (630)
Q Consensus       270 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~L  349 (630)
                      +..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.++++.|
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred             HHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence            9999999999999999998865 899999999999999999999999999886 89999999999999999999999999


Q ss_pred             hc
Q 006802          350 LS  351 (630)
Q Consensus       350 l~  351 (630)
                      .+
T Consensus       236 ~~  237 (241)
T 1k1a_A          236 AT  237 (241)
T ss_dssp             --
T ss_pred             cc
Confidence            87

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.7e-36  Score=296.77  Aligned_cols=228  Identities=26%  Similarity=0.326  Sum_probs=210.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCc
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD  196 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t  196 (630)
                      +..++||||.||+.|+.+.+++|++.++     ..++..|..|.||||+|+..|+.+++++|+++  +.+++..+..|.|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t   75 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWS   75 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCC
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhch-----hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCC
Confidence            4568899999999999999999998865     33778899999999999999999999999998  4667788899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHH
Q 006802          197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE  276 (630)
Q Consensus       197 ~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~  276 (630)
                      |||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+
T Consensus        76 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~  153 (231)
T 3aji_A           76 PLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLK  153 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHH
Confidence            99999999999999999999988 4567889999999999999999999999999987 678899999999999999999


Q ss_pred             HHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCC
Q 006802          277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  356 (630)
Q Consensus       277 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  356 (630)
                      ++++|++.++++... |..|.||||+|+..++.+++++|++.++++ +.+|..|.||||+|+..++.+++++|.+ .|++
T Consensus       154 ~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~lL~~-~~a~  230 (231)
T 3aji_A          154 MVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGLILKRLAEG-EEAS  230 (231)
T ss_dssp             HHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHHHHHHHHHH-HHHC
T ss_pred             HHHHHHhcCCCcccc-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHHHHHHHHcc-cccc
Confidence            999999999998765 899999999999999999999999999876 8999999999999999999999999998 5554

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.9e-36  Score=308.48  Aligned_cols=270  Identities=17%  Similarity=0.176  Sum_probs=209.5

Q ss_pred             CccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHH
Q 006802           72 STRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDL  151 (630)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~  151 (630)
                      ..+.+..|.+...|..+..........+  .+.....-....+..+..|.||||+||..|+.++|++|++.+.+      
T Consensus        13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------   84 (285)
T 3d9h_A           13 GLVPRGSHMASMDGKQGGMDGSKPAGPR--DFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA------   84 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC------
T ss_pred             hHHHHHHHHHhhcCCCCCcccCCCCccc--cccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC------
Confidence            3445778888888775544422111000  00000011233567889999999999999999999999998754      


Q ss_pred             hhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChH
Q 006802          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA  231 (630)
Q Consensus       152 l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tp  231 (630)
                      ++.+|..|.||||+|+..|+.++|++|+++  +.+++..+..|.||||+|+..|+.+++++|++.++++.  .+..|.||
T Consensus        85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~  160 (285)
T 3d9h_A           85 VNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASP  160 (285)
T ss_dssp             SCEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCH
T ss_pred             CCCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCH
Confidence            678899999999999999999999999998  56778889999999999999999999999999998854  24469999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHH
Q 006802          232 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI  311 (630)
Q Consensus       232 L~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~i  311 (630)
                      ||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+++++  .+..|.||||+|+..++.++
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~  237 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEEL  237 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999999987 7789999999999999999999999999999987  38899999999999999999


Q ss_pred             HHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCccc
Q 006802          312 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS  359 (630)
Q Consensus       312 v~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~  359 (630)
                      +++|++.+.++ +.+|.+|+||||+|+  ++.+++++|++..|+++..
T Consensus       238 v~~Ll~~gad~-~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          238 ACLLMDFGADT-QAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             HHHHHHTTCCT-TCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             HHHHHHCCCCC-CCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            99999998876 899999999999999  5579999999966877653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.4e-36  Score=293.86  Aligned_cols=221  Identities=24%  Similarity=0.260  Sum_probs=148.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CCccccCCCCCChHHHHHH
Q 006802          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAA  236 (630)
Q Consensus       159 g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~--~~~~~~~d~~g~tpL~~Aa  236 (630)
                      |+||||+|+..|+.++|++|++.+ .......+..|.||||+|+..|+.+++++|++.+  +++....+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            345555555555555555555442 1222224445555555555555555555555554  3322224556666666666


Q ss_pred             HcCCHHHHHHHHhcC--CchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHH
Q 006802          237 AQGHIDVVNFLLEID--SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE  314 (630)
Q Consensus       237 ~~g~~e~v~~LL~~~--~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~  314 (630)
                      ..|+.+++++|+++|  +++ +..+..|.||||.|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHH
Confidence            666666666666665  443 455667777777777777777777777777776654 7778888888888888888888


Q ss_pred             hhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 006802          315 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  385 (630)
Q Consensus       315 Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~  385 (630)
                      |++.++..++.+|.+|+||||+|+..|+.+++++|++..|++++.+|..|.||+++|...   +++++|++
T Consensus       159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            888775555888999999999999999999999999438999999999999999998643   56666654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.3e-36  Score=293.80  Aligned_cols=233  Identities=27%  Similarity=0.328  Sum_probs=208.1

Q ss_pred             hcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHH
Q 006802          153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTAL  232 (630)
Q Consensus       153 ~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL  232 (630)
                      ...|..|.||||.|+..|+.+++++|++.  +.+++..+..|.||||+|+..|+.+++++|++.+++.....+..|.|||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            45678889999999999999999999987  4567778889999999999999999999999999987777777799999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC-HHH
Q 006802          233 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN-EDI  311 (630)
Q Consensus       233 ~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~-~~i  311 (630)
                      |+|+..|+.+++++|++.|+++ +..+..|.||||.|+..|+.+++++|++.++++... +..|.||||+|+..++ .++
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHhCChHHH
Confidence            9999999999999999999887 667889999999999999999999999999988765 8899999999996665 889


Q ss_pred             HHHhhcCCCCcccccCC-CCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          312 VLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       312 v~~Ll~~~~~~~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      +++|++.+.++ +..+. .|+||||+|+..|+.+++++|++ .|++++..|..|.|||++|+..++.+++++|+++|++.
T Consensus       159 ~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          159 TRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            99999998877 66675 89999999999999999999999 79999999999999999999999999999999999876


Q ss_pred             c
Q 006802          391 S  391 (630)
Q Consensus       391 ~  391 (630)
                      .
T Consensus       237 ~  237 (240)
T 3eu9_A          237 G  237 (240)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.3e-35  Score=300.65  Aligned_cols=249  Identities=20%  Similarity=0.229  Sum_probs=191.2

Q ss_pred             hhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc-ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCh
Q 006802          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCST  230 (630)
Q Consensus       152 l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~-~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~t  230 (630)
                      ++.+|..|+||||+|+..|+.++|++|++++... .++..+..|.||||+|+..|+.+++++|++++++ ++..|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence            5678999999999999999999999999974332 2677889999999999999999999999999988 4567889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCchh------------hhhccCCCcHHHHHHHcCCHHHHHHH-HhCCCCCCcccCCCCC
Q 006802          231 ALHTAAAQGHIDVVNFLLEIDSNLA------------KIARNNGKTVLHSAARMGHLEVVKAL-VSKDPSTGFRTDKKGQ  297 (630)
Q Consensus       231 pL~~Aa~~g~~e~v~~LL~~~~~~~------------~~~d~~g~tpLh~Aa~~g~~~iv~~L-l~~~~~~~~~~d~~g~  297 (630)
                      |||+|+..|+.+++++|++++++..            ......+.++++.++..+....+..+ ...+.++.. .+..|.
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~  159 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGH  159 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTC-CCTTSC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCC-cCCCCc
Confidence            9999999999999999999886531            12234567788877776654443333 333444443 488999


Q ss_pred             chhhhhccCCCHHHHHHhhcCCCCcccccCC-CCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCC
Q 006802          298 TALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN  376 (630)
Q Consensus       298 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~  376 (630)
                      ||||+|+..|+.+++++|++.++++ +..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++
T Consensus       160 t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          160 TPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCC
Confidence            9999999999999999999999887 66664 59999999999999999999999 799999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          377 TELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       377 ~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      .+++++|+++|+++...+..+.+|....
T Consensus       238 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          238 PILARLLRAHGAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             HHHHHHHHHTTCCCCCCC----------
T ss_pred             cHHHHHHHHcCCCcCcCCCccccccccc
Confidence            9999999999999999888888876654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.3e-35  Score=302.29  Aligned_cols=244  Identities=19%  Similarity=0.189  Sum_probs=214.4

Q ss_pred             HHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCH
Q 006802          128 ARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL  207 (630)
Q Consensus       128 a~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~  207 (630)
                      ++..+.+.+..+|....       ++.+|..|.||||+|+..|+.++|++|+++  +.+++..  +|.||||+|+..|+.
T Consensus         7 i~~~~~~~v~~lL~~~~-------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            7 INTWKSKQLKSFLSSKD-------TFKADVHGHSASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAATLEDT   75 (285)
T ss_dssp             GGGCCHHHHHHHHHSTT-------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHTTSSSC
T ss_pred             HHhcCHHHHHHHHHhCC-------CCccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHHHcCCH
Confidence            34566666777776542       678899999999999999999999999998  3444443  599999999999999


Q ss_pred             HHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCC-CcHHHHHHHcCCHHHHHHHHhCCC
Q 006802          208 EVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNG-KTVLHSAARMGHLEVVKALVSKDP  286 (630)
Q Consensus       208 eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g-~tpLh~Aa~~g~~~iv~~Ll~~~~  286 (630)
                      +++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..| .||||+|+..|+.+++++|++.++
T Consensus        76 ~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A           76 KIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            999999999988 4567889999999999999999999999999987 6788888 799999999999999999999998


Q ss_pred             CCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChH-HHHHHHhCcHHHHHHHhcccCCCcccccCCCC
Q 006802          287 STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA-LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE  365 (630)
Q Consensus       287 ~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~Tp-Lh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~  365 (630)
                      +...  ...|.||||+|+..|+.+++++|++.++++ +.+|..|+|| ||+|+..|+.+++++|++ .|++++..|.   
T Consensus       154 ~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~---  226 (285)
T 3kea_A          154 STFD--LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL---  226 (285)
T ss_dssp             TTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG---
T ss_pred             cccc--ccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh---
Confidence            8732  238999999999999999999999998776 8899999998 999999999999999999 8999999884   


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Q 006802          366 SPLDVAEKLGNTELFSLLKEAGAAHSKDHG  395 (630)
Q Consensus       366 TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~  395 (630)
                          .|+..++.+++++|+++|++......
T Consensus       227 ----~a~~~~~~~iv~~Ll~~g~~~~~~~~  252 (285)
T 3kea_A          227 ----ENVLLDDAEIAKMIIEKHVEYKSDSY  252 (285)
T ss_dssp             ----GGGTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred             ----hhhhcCCHHHHHHHHHcCCCCCCccc
Confidence                55778999999999999998765443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-36  Score=318.74  Aligned_cols=264  Identities=20%  Similarity=0.234  Sum_probs=211.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC-CCCCcHHHH
Q 006802          122 LQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA-RNGYDSFHV  200 (630)
Q Consensus       122 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~-~~g~t~Lh~  200 (630)
                      ++++-+...|+.++++.++..           .++..|.||||+|+..|+ +++++|+..    .++..+ ..|.||||+
T Consensus        68 ~~~~~~~~~g~~~~~~~~~~~-----------~~~~~g~t~L~~Aa~~~~-~~~~~L~~~----~~n~~d~~~g~t~Lh~  131 (373)
T 2fo1_E           68 GYGNGNDFLGDFNHTNLQIPT-----------EPEPESPIKLHTEAAGSY-AITEPITRE----SVNIIDPRHNRTVLHW  131 (373)
T ss_dssp             -------------------------------------CCCHHHHHHHSSS-CCCSCCSTT----TTTTCCCSSCCCHHHH
T ss_pred             ccCCCCCcccccccccccccc-----------CCCCCCccHHHHHhcCCc-hHHHHhccc----cccccCCcCCCCHHHH
Confidence            456778888999999887643           347889999999999654 788777653    456666 789999999


Q ss_pred             HHHcCCHHHHHHHH--------hcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHc
Q 006802          201 AAKQGHLEVLKELL--------GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM  272 (630)
Q Consensus       201 A~~~g~~eiv~~Ll--------~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~  272 (630)
                      |+..|+.+++++|+        +.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..
T Consensus       132 Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~  209 (373)
T 2fo1_E          132 IASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAAN  209 (373)
T ss_dssp             HHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHC
Confidence            99999998888776        66776 5678999999999999999999999999999987 67889999999999999


Q ss_pred             CCHHHHHHHHhCC---CCCCcccCCCCCchhhhhccCC---CHHHHHHhhcCCCCcc-------cccCCCCChHHHHHHH
Q 006802          273 GHLEVVKALVSKD---PSTGFRTDKKGQTALHMAVKGQ---NEDIVLELIRPDPSVL-------KLEDNKGNTALHIAIK  339 (630)
Q Consensus       273 g~~~iv~~Ll~~~---~~~~~~~d~~g~t~Lh~Aa~~g---~~~iv~~Ll~~~~~~~-------n~~d~~G~TpLh~A~~  339 (630)
                      |+.+++++|++.+   .+.... |..|.||||+|+..+   +.+++++|++.+.++.       +..|..|+||||+|+.
T Consensus       210 g~~~~v~~Ll~~~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~  288 (373)
T 2fo1_E          210 RDFGMMVYMLNSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ  288 (373)
T ss_dssp             TCHHHHHHHTTSHHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHS
T ss_pred             CCHHHHHHHHhcCccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHH
Confidence            9999999999987   565544 899999999999988   8999999999987651       2367899999999999


Q ss_pred             hCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          340 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       340 ~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      .|+.++|++|++..+++++.+|..|.||||+|+..|+.+++++|+++|++....+..+.++....
T Consensus       289 ~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  353 (373)
T ss_dssp             SCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             hCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence            99999999999866799999999999999999999999999999999999998888888887654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-36  Score=305.44  Aligned_cols=229  Identities=28%  Similarity=0.349  Sum_probs=154.9

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc------ccccCCCCCCcHHHHHHHcCCH-HHHHHHHhcCCCccccCCCC
Q 006802          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLE------TASIPARNGYDSFHVAAKQGHL-EVLKELLGEFPNLVMTTDLS  227 (630)
Q Consensus       155 ~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~------~~~~~~~~g~t~Lh~A~~~g~~-eiv~~Ll~~~~~~~~~~d~~  227 (630)
                      +|..+.+||+.||..|+.++|++||+.+...      ..+..+..|.||||.|+..++. .+++.|++.+.+ ++..|.+
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~   85 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQD   85 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCTT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCCC
Confidence            3445556666666666666666666553211      1334556677888888776665 467778877777 4567788


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCC
Q 006802          228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  307 (630)
Q Consensus       228 g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g  307 (630)
                      |.||||+|+..|+.+++++|++.++++ +..+.+|.||+|.|+..++.+++++|++.+++++.. |..|+||||+|+..|
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~-d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-DLSGNTPLIYACSGG  163 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCC
Confidence            888888888888888888888888876 667888889999999999999999999888888765 888999999999999


Q ss_pred             CHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCC-HHHHHHHHHc
Q 006802          308 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-TELFSLLKEA  386 (630)
Q Consensus       308 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~-~~iv~~L~~~  386 (630)
                      +.+++++|++.++++ |.+|..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|+++++ .+++++|...
T Consensus       164 ~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~  241 (269)
T 4b93_B          164 HHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSC  241 (269)
T ss_dssp             CGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC----
T ss_pred             CHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHh
Confidence            999999999988776 8889999999999999999999999998 899999999999999999987664 2333344444


Q ss_pred             CC
Q 006802          387 GA  388 (630)
Q Consensus       387 ga  388 (630)
                      ++
T Consensus       242 ~~  243 (269)
T 4b93_B          242 VA  243 (269)
T ss_dssp             --
T ss_pred             ch
Confidence            43

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=304.08  Aligned_cols=253  Identities=21%  Similarity=0.268  Sum_probs=215.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCC
Q 006802          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG  194 (630)
Q Consensus       115 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g  194 (630)
                      ..+..|.||||.||..|+.++|++|++.+.+      ++..|..|.||||+|+..|+.++|++|+++  +.+++..+..|
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g  106 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEG  106 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTS
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCC
Confidence            3456789999999999999999999998764      677899999999999999999999999997  56778889999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC
Q 006802          195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH  274 (630)
Q Consensus       195 ~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~  274 (630)
                      .||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.++++.++.......+..+..+.++++.      
T Consensus       107 ~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~------  179 (299)
T 1s70_B          107 WIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR------  179 (299)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH------
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH------
Confidence            9999999999999999999999988 456789999999999999999999998875433334444444444443      


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccC
Q 006802          275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  354 (630)
Q Consensus       275 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  354 (630)
                        .+..++..+.......+..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|
T Consensus       180 --~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~g  255 (299)
T 1s70_B          180 --DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE-NL  255 (299)
T ss_dssp             --HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TT
T ss_pred             --HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHHHHHHH-cC
Confidence              3455666666666666889999999999999999999999998876 8999999999999999999999999999 89


Q ss_pred             CCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          355 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       355 ~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      ++++.+|..|+||||+|.+.....+.+++.+.
T Consensus       256 ad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~  287 (299)
T 1s70_B          256 CDMEAVNKVGQTAFDVADEDILGYLEELQKKQ  287 (299)
T ss_dssp             CCTTCCCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999765444444444443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.5e-35  Score=287.26  Aligned_cols=220  Identities=28%  Similarity=0.425  Sum_probs=196.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc-CCCCCCcHH
Q 006802          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI-PARNGYDSF  198 (630)
Q Consensus       120 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~-~~~~g~t~L  198 (630)
                      |+||||.||+.|+.+++++|++.++.     .....|..|.||||+|+..|+.+++++|++.+...+... .+..|.|||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L   76 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF   76 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGG-----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcc-----ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence            78999999999999999999998753     356689999999999999999999999999864455555 788999999


Q ss_pred             HHHHHcCCHHHHHHHHhcC--CCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHH
Q 006802          199 HVAAKQGHLEVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE  276 (630)
Q Consensus       199 h~A~~~g~~eiv~~Ll~~~--~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~  276 (630)
                      |+|+..|+.+++++|++.+  ++ .+..+..|.||||+|+..|+.+++++|+++|.++ +..|..|.||||+|+..|+.+
T Consensus        77 ~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           77 HIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999998  54 5667889999999999999999999999999987 778899999999999999999


Q ss_pred             HHHHHHhCC-CCCCcccCCCCCchhhhhccCCCHHHHHHhh-cCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          277 VVKALVSKD-PSTGFRTDKKGQTALHMAVKGQNEDIVLELI-RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       277 iv~~Ll~~~-~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll-~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      ++++|++.+ .+++. .|..|+||||+|+..|+.+++++|+ +.+.++ +.+|.+|.||||+|+..   +++++|++
T Consensus       155 ~v~~Ll~~g~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          155 LIELLCGLGKSAVNW-QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHHHHHTTTCCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHHHHHhcCcccccC-cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            999999999 55554 5999999999999999999999999 777765 89999999999999765   56666665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.9e-36  Score=301.20  Aligned_cols=227  Identities=26%  Similarity=0.302  Sum_probs=174.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcChhh--hhHHhhcCCCCCCcHHHHHHHhCCHH-HHHHHHhcCCccccccCC
Q 006802          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANE--AKDLLSKKNQEGETPLYVAAESGHAL-IVEEMLQHMNLETASIPA  191 (630)
Q Consensus       115 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~--~~~~l~~~n~~g~TpLh~Aa~~g~~e-iv~~LL~~~~~~~~~~~~  191 (630)
                      .+|.++.++|+.||+.|+.++|++||+.+....  ....++..+..|.||||.|+..++.+ ++++|++.  +.+++..|
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d   83 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTS   83 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcC
Confidence            356778899999999999999999999876431  12346677889999999999888764 78899987  56788899


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHH
Q 006802          192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR  271 (630)
Q Consensus       192 ~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~  271 (630)
                      .+|.||||+|+..|+.+++++|++.+++ +...+..|.||+|.|+..++.+++++|++.|+++ +..|..|.||||+|+.
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACS  161 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            9999999999999999999999999988 5667889999999999999999999999999987 7789999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHH
Q 006802          272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  349 (630)
Q Consensus       272 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~L  349 (630)
                      .|+.+++++|++.+++++.. +..|.||||+|+..|+.++|++|++.|+++ +.+|.+|+||||+|+++++  ++++|
T Consensus       162 ~g~~~~v~~Ll~~gadvn~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          162 GGHHELVALLLQHGASINAS-NNKGNTALHEAVIEKHVFVVELLLLHGASV-QVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             TTCGGGHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             CCCHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            99999999999999998865 999999999999999999999999999876 9999999999999998875  44443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2e-34  Score=284.28  Aligned_cols=234  Identities=21%  Similarity=0.252  Sum_probs=207.9

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCC
Q 006802          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR  192 (630)
Q Consensus       113 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~  192 (630)
                      ++..|..|.|+||.|+..|+.+++++|++.+.+      ++.++..|.||||+|+..|+.+++++|++++. ......+.
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~   74 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD------VRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGD   74 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCBTT
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCC------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC-cchhhcCC
Confidence            345678899999999999999999999998754      67788999999999999999999999999842 22334556


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHc
Q 006802          193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM  272 (630)
Q Consensus       193 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~  272 (630)
                      .|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||.|+..
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~  152 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYR  152 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             cCCChhHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHh
Confidence            699999999999999999999999887 4567889999999999999999999999999987 77889999999999977


Q ss_pred             CC-HHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          273 GH-LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       273 g~-~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      ++ .+++++|++.+++.....+..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..|+.+++++|++
T Consensus       153 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~v~~L~~  231 (240)
T 3eu9_A          153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNVWMINHLQE  231 (240)
T ss_dssp             CCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            76 899999999999998774448999999999999999999999998776 8999999999999999999999999999


Q ss_pred             ccCCCc
Q 006802          352 IEGIDV  357 (630)
Q Consensus       352 ~~g~~i  357 (630)
                       .+.+.
T Consensus       232 -~~~~~  236 (240)
T 3eu9_A          232 -ARQAK  236 (240)
T ss_dssp             -HC---
T ss_pred             -hhhcc
Confidence             56544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.3e-34  Score=283.09  Aligned_cols=218  Identities=21%  Similarity=0.291  Sum_probs=177.2

Q ss_pred             CCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHh
Q 006802          170 GHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE  249 (630)
Q Consensus       170 g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~  249 (630)
                      |+.+++++|++++. ......+.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTC-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCC-CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            56677777777622 22233467778888888888888888888877766 44567778888888888888888888888


Q ss_pred             cCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCC
Q 006802          250 IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK  329 (630)
Q Consensus       250 ~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~  329 (630)
                      .++...+..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            877545667778888888888888888888888888877655 788888888888888888888888887765 888999


Q ss_pred             CChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 006802          330 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  392 (630)
Q Consensus       330 G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~  392 (630)
                      |+||||+|+..|+.+++++|++ .|++++.+|..|.||+++|+..++.+++++|+++|+....
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence            9999999999999999999999 8999999999999999999999999999999999997654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.6e-34  Score=278.09  Aligned_cols=216  Identities=17%  Similarity=0.202  Sum_probs=187.0

Q ss_pred             CCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHH
Q 006802          131 GNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVL  210 (630)
Q Consensus       131 g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv  210 (630)
                      |+.+++++|++.+.+.     ....|..|.||||+|+..|+.+++++|+++  +.+.+..+..|.||||+|+..|+.+++
T Consensus         2 g~~~~i~~Ll~~g~~~-----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            2 DAPAVISDFIYQGASL-----HNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ---CCEETTEETTCCT-----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHcCCCc-----ccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            6777888888876642     344578899999999999999999999987  456677888899999999999999999


Q ss_pred             HHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 006802          211 KELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF  290 (630)
Q Consensus       211 ~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~  290 (630)
                      ++|++.++......+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.++++..
T Consensus        75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A           75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999888667778889999999999999999999999998886 67788899999999999999999999999988876


Q ss_pred             ccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCc
Q 006802          291 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV  357 (630)
Q Consensus       291 ~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~i  357 (630)
                      . |..|.||||+|+..|+.+++++|++.++++ +.+|..|.||||+|+..++.+++++|++ .|+..
T Consensus       154 ~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~  217 (223)
T 2f8y_A          154 Q-NNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR  217 (223)
T ss_dssp             C-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred             c-CCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence            5 889999999999999999999999998876 8889999999999999999999999998 67654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.8e-34  Score=290.77  Aligned_cols=228  Identities=15%  Similarity=0.151  Sum_probs=203.4

Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 006802          112 NKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA  191 (630)
Q Consensus       112 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~  191 (630)
                      +++.+|..|.||||+||..|+.++|++|++.+.+      ++..  +|.||||+|+..|+.+++++|+++  +.+++..+
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d   92 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL------KNLL--ENEFPLHQAATLEDTKIVKILLFS--GLDDSQFD   92 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG------GSCC--TTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCC--CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence            4788999999999999999999999999998654      3444  489999999999999999999998  56677889


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCC-ChHHHHHHHcCCHHHHHHHHhcCCchhhhhcc-CCCcHHHHH
Q 006802          192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC-STALHTAAAQGHIDVVNFLLEIDSNLAKIARN-NGKTVLHSA  269 (630)
Q Consensus       192 ~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g-~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~-~g~tpLh~A  269 (630)
                      ..|.||||+|+..|+.+++++|++.+++ ++..+..| .||||+|+..|+.+++++|+++|++.   .+. .|.||||+|
T Consensus        93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A  168 (285)
T 3kea_A           93 DKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHIT  168 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHH
Confidence            9999999999999999999999999888 45677788 89999999999999999999999876   233 899999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCCCch-hhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHH
Q 006802          270 ARMGHLEVVKALVSKDPSTGFRTDKKGQTA-LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  348 (630)
Q Consensus       270 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~  348 (630)
                      +..|+.+++++|++.+++++.. |..|+|| ||+|+..|+.+++++|++.++++ +..|       +.|+..|+.+++++
T Consensus       169 ~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~-~~~~-------~~a~~~~~~~iv~~  239 (285)
T 3kea_A          169 IKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYDINI-YSAN-------LENVLLDDAEIAKM  239 (285)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS-TTTT-------GGGGTTTCHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHcCCCC-CCCC-------hhhhhcCCHHHHHH
Confidence            9999999999999999988765 8999998 99999999999999999998876 6666       36688999999999


Q ss_pred             HhcccCCCcccccCC
Q 006802          349 LLSIEGIDVNSLNKA  363 (630)
Q Consensus       349 Ll~~~g~~in~~n~~  363 (630)
                      |++ .|++++..+..
T Consensus       240 Ll~-~g~~~~~~~~~  253 (285)
T 3kea_A          240 IIE-KHVEYKSDSYT  253 (285)
T ss_dssp             HHH-HHHHHTTCTTT
T ss_pred             HHH-cCCCCCCcccc
Confidence            999 78887765543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-34  Score=290.48  Aligned_cols=266  Identities=20%  Similarity=0.211  Sum_probs=217.6

Q ss_pred             HHHHcCCHHHHHHHHHhcChhhhh---HHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHH
Q 006802          126 LAARAGNLSRVMEILQSCDANEAK---DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAA  202 (630)
Q Consensus       126 ~Aa~~g~~~~v~~Ll~~~~~~~~~---~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~  202 (630)
                      .+++.|+.+.++.++.........   ......+..|.||||.||..|+.++|++|+++  +.+++..+.+|.||||+|+
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQAC   81 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH
Confidence            467778888888888765432110   01122345678999999999999999999998  4567778899999999999


Q ss_pred             HcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHH
Q 006802          203 KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV  282 (630)
Q Consensus       203 ~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll  282 (630)
                      ..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.++++.++
T Consensus        82 ~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B           82 IDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            99999999999999888 5667889999999999999999999999999987 678899999999999999999999988


Q ss_pred             hCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccC
Q 006802          283 SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK  362 (630)
Q Consensus       283 ~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~  362 (630)
                      ..........+..+.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|++ .|++++.+|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~  230 (299)
T 1s70_B          160 NRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDY  230 (299)
T ss_dssp             HHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCT
T ss_pred             hhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCC
Confidence            7533222222222333333        234455555555556678899999999999999999999999 8999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          363 AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       363 ~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      .|.||||+|+..|+.+++++|+++|++....+..+.++....
T Consensus       231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999999999998888888876554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=6.7e-34  Score=295.60  Aligned_cols=249  Identities=18%  Similarity=0.167  Sum_probs=195.4

Q ss_pred             ccccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhc-----------CCCCCCcHHHHHHHhCCHHHHH
Q 006802          108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK-----------KNQEGETPLYVAAESGHALIVE  176 (630)
Q Consensus       108 ~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~-----------~n~~g~TpLh~Aa~~g~~eiv~  176 (630)
                      +++.+++..+..|.|++|     |+.++|+.||+.+.++....+...           ......+.+|+|+..+..++++
T Consensus        40 ~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  114 (327)
T 1sw6_A           40 SSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVND  114 (327)
T ss_dssp             TSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHH
T ss_pred             hCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHH
Confidence            567788889999999988     999999999998754322221111           1112234468899999999999


Q ss_pred             HHHhcCCcccccc-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCC---HHHHHHHHhcCC
Q 006802          177 EMLQHMNLETASI-PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH---IDVVNFLLEIDS  252 (630)
Q Consensus       177 ~LL~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~---~e~v~~LL~~~~  252 (630)
                      .|++.  +.+++. .+..|.||||+|+..|+.+++++|++++++ ++..|..|.||||+|+..|+   .++++.|++.+.
T Consensus       115 ~l~~~--g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~  191 (327)
T 1sw6_A          115 AFPNT--QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  191 (327)
T ss_dssp             HCTTS--CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHHhc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence            99987  567777 799999999999999999999999999988 46789999999999999998   788888888874


Q ss_pred             chhhhhccCCCcHHHHHHH----cCCHHHHHHHHhC--------------------CCCCCcccCCCCCchhhhhccCCC
Q 006802          253 NLAKIARNNGKTVLHSAAR----MGHLEVVKALVSK--------------------DPSTGFRTDKKGQTALHMAVKGQN  308 (630)
Q Consensus       253 ~~~~~~d~~g~tpLh~Aa~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~Aa~~g~  308 (630)
                      ...+..|..|.||||+|+.    .|+.+++++|++.                    +.++... +..|.||||.|+.   
T Consensus       192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~-~~~g~t~L~~a~~---  267 (327)
T 1sw6_A          192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK-NGERKDSILENLD---  267 (327)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS---
T ss_pred             ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc-cccCCChhHHHHH---
Confidence            4457889999999999999    8999999999987                    6666654 8999999999996   


Q ss_pred             HHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcC
Q 006802          309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  375 (630)
Q Consensus       309 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~  375 (630)
                         +++|++.+   ++.+|.+|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..|
T Consensus       268 ---~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 ---LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ---HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred             ---HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence               88888873   58899999999999999999999999999 89999999999999999998653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.3e-33  Score=278.86  Aligned_cols=219  Identities=21%  Similarity=0.287  Sum_probs=152.1

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCC
Q 006802          114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN  193 (630)
Q Consensus       114 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~  193 (630)
                      +.+|.+|.||||+|+..|+.+++++|++.+...  ...++.+|..|.||||+|+..|+.++|++|+++  +.+++..+..
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~   77 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFR   77 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTT
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc--HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCC
Confidence            346777888888888888888888888765421  123667777888888888888888888888876  4556667777


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCC-----ccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhcc-CCCcHHH
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPN-----LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN-NGKTVLH  267 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~-----~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~-~g~tpLh  267 (630)
                      |.||||+|+..|+.+++++|++.++.     .....+..|.||||+|+..|+.+++++|+++|+++ +..+. .|.||||
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~  156 (236)
T 1ikn_D           78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALH  156 (236)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHH
Confidence            88888888888888888888877653     24556667777777777777777777777777776 44554 7777777


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcc-cccCCCCChHHHHHH
Q 006802          268 SAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL-KLEDNKGNTALHIAI  338 (630)
Q Consensus       268 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~-n~~d~~G~TpLh~A~  338 (630)
                      +|+..|+.+++++|++.++++... |..|.||||+|+..++.+++++|++.+++.. ...+..|.||.+.+.
T Consensus       157 ~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          157 LAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCSCCC-CTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcc-cCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence            777777777777777777776654 6777777777777777777777777776542 355666666655443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=6.6e-34  Score=280.99  Aligned_cols=214  Identities=24%  Similarity=0.277  Sum_probs=142.5

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCc--cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChH
Q 006802          154 KKNQEGETPLYVAAESGHALIVEEMLQHMNL--ETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTA  231 (630)
Q Consensus       154 ~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tp  231 (630)
                      .+|..|.||||+|+..|+.+++++|++....  ..++..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            4577888888888888888888888887432  24666777788888888888888888888887776 45567778888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCch-----hhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCC-CCCchhhhhcc
Q 006802          232 LHTAAAQGHIDVVNFLLEIDSNL-----AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK-KGQTALHMAVK  305 (630)
Q Consensus       232 L~~Aa~~g~~e~v~~LL~~~~~~-----~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~Aa~  305 (630)
                      ||+|+..|+.+++++|++.+++.     ....+..|.||||+|+..|+.+++++|++.++++... +. .|.||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHH
Confidence            88888888888888888877532     2445566777777777777777777777766666544 33 56666666666


Q ss_pred             CCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcc--cccCCCCCHHHHH
Q 006802          306 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN--SLNKAGESPLDVA  371 (630)
Q Consensus       306 ~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in--~~n~~G~TpL~~A  371 (630)
                      .|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .|++..  ..+..|.||.+.+
T Consensus       161 ~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             TTCHHHHHHHHTTTCCS-CCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC
T ss_pred             cCCHHHHHHHHHcCCCC-CcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhh
Confidence            66666666666665554 5556666666666666666666666666 555544  4555555555443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.3e-32  Score=259.53  Aligned_cols=194  Identities=21%  Similarity=0.272  Sum_probs=154.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHH
Q 006802          192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR  271 (630)
Q Consensus       192 ~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~  271 (630)
                      ..+.||||.|+..|+.+.++.|+..++..++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            346677777777777777777777776446666777788888888888888888888887776 5667778888888888


Q ss_pred             cCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCc-----HHHH
Q 006802          272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR-----TQIV  346 (630)
Q Consensus       272 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~-----~~iv  346 (630)
                      .|+.+++++|++.+.......|..|.||||+|+..|+.+++++|++.+...++.+|..|+||||+|+..++     .+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            88888888888544433334477888888888888888888888888755558888889999999998887     8899


Q ss_pred             HHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          347 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       347 ~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      ++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       162 ~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          162 KLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99998 78999999999999999999999999999998876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.2e-30  Score=250.63  Aligned_cols=189  Identities=25%  Similarity=0.309  Sum_probs=97.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHc
Q 006802          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ  238 (630)
Q Consensus       159 g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  238 (630)
                      +.||||.|+..|+.+.++.|+... ..+++..+.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             cccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            344444444444444444444431 123333444444444444444444444444444444 233444445555555555


Q ss_pred             CCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCcccCCCCCchhhhhccCCC-----HHHH
Q 006802          239 GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD-PSTGFRTDKKGQTALHMAVKGQN-----EDIV  312 (630)
Q Consensus       239 g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~-~~~~~~~d~~g~t~Lh~Aa~~g~-----~~iv  312 (630)
                      |+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+ .++. ..|..|+||||+|+..++     .+++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            55555555553333222444455555555555555555555555555 2332 235555555555555555     5666


Q ss_pred             HHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          313 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       313 ~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      ++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++
T Consensus       162 ~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          162 KLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            6666665554 6666677777777777777777777766

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.4e-31  Score=270.56  Aligned_cols=215  Identities=17%  Similarity=0.207  Sum_probs=143.1

Q ss_pred             hhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCC--ccccc----cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccc
Q 006802          152 LSKKNQEGETPLYVAAESGHALIVEEMLQHMN--LETAS----IPARNGYDSFHVAAKQ---GHLEVLKELLGEFPNLVM  222 (630)
Q Consensus       152 l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~--~~~~~----~~~~~g~t~Lh~A~~~---g~~eiv~~Ll~~~~~~~~  222 (630)
                      .+..|..|.||||+|+..|+.++|+.|++.+.  ...++    ..+..|.||||+|+..   |+.+++++|++.+++...
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            34566677777777777777777777766421  11111    2345556666666654   555666655555432100


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc----------
Q 006802          223 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT----------  292 (630)
Q Consensus       223 ~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~----------  292 (630)
                                           ++.++..+.   ...|..|.||||+|+..|+.+++++|++.++++....          
T Consensus        86 ---------------------~~~~i~~~~---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  141 (273)
T 2pnn_A           86 ---------------------LKQFVNASY---TDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKG  141 (273)
T ss_dssp             ---------------------HHHHHTCCC---CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSS
T ss_pred             ---------------------hhHHhhccc---ccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccc
Confidence                                 000111000   0133456666666666666666666666666655431          


Q ss_pred             ---CCCCCchhhhhccCCCHHHHHHhhc---CCCCcccccCCCCChHHHHHHHhCc---------HHHHHHHhcccCCCc
Q 006802          293 ---DKKGQTALHMAVKGQNEDIVLELIR---PDPSVLKLEDNKGNTALHIAIKKGR---------TQIVRCLLSIEGIDV  357 (630)
Q Consensus       293 ---d~~g~t~Lh~Aa~~g~~~iv~~Ll~---~~~~~~n~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~~g~~i  357 (630)
                         +..|.||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..|+         .+++++|++ .|+++
T Consensus       142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~  219 (273)
T 2pnn_A          142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKL  219 (273)
T ss_dssp             SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhc
Confidence               2379999999999999999999999   66665 8899999999999999988         899999999 79998


Q ss_pred             c-------cccCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCcc
Q 006802          358 N-------SLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSK  392 (630)
Q Consensus       358 n-------~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga-~~~~  392 (630)
                      +       .+|..|.||||+|+..|+.+++++|+++|| ++..
T Consensus       220 n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC  262 (273)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC----
T ss_pred             ccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh
Confidence            6       489999999999999999999999999999 4443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.3e-31  Score=266.10  Aligned_cols=164  Identities=26%  Similarity=0.329  Sum_probs=122.1

Q ss_pred             CCCCCChHHHHHHHc---CCHHHHHHHHhcCCchhh----------hhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 006802          224 TDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAK----------IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF  290 (630)
Q Consensus       224 ~d~~g~tpL~~Aa~~---g~~e~v~~LL~~~~~~~~----------~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~  290 (630)
                      .|..|.||||+|+..   |+.+++++|++.|++...          ..|..|.||||+|+..|+.+++++|++.+++++.
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  118 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL  118 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            344444555555544   455555555544433211          1124466666666666666666666666666554


Q ss_pred             ccCC-------------CCCchhhhhccCCCHHHHHHhhc---CCCCcccccCCCCChHHHHHHH--hCcHH-------H
Q 006802          291 RTDK-------------KGQTALHMAVKGQNEDIVLELIR---PDPSVLKLEDNKGNTALHIAIK--KGRTQ-------I  345 (630)
Q Consensus       291 ~~d~-------------~g~t~Lh~Aa~~g~~~iv~~Ll~---~~~~~~n~~d~~G~TpLh~A~~--~g~~~-------i  345 (630)
                      . +.             .|.||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+.  .++.+       +
T Consensus       119 ~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~i  196 (256)
T 2etb_A          119 R-ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHM  196 (256)
T ss_dssp             C-CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             c-cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHH
Confidence            3 33             39999999999999999999999   66665 8899999999999999  78888       9


Q ss_pred             HHHHhcccCCCc-------ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          346 VRCLLSIEGIDV-------NSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       346 v~~Ll~~~g~~i-------n~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      +++|++ .|+++       +.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       197 v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          197 YDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            999999 89999       999999999999999999999999999998764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.1e-31  Score=271.24  Aligned_cols=228  Identities=21%  Similarity=0.278  Sum_probs=145.5

Q ss_pred             ccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhh----cCCCCCCcHHHHHHHh---CCHHHHHHHHhcC
Q 006802          110 KKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLS----KKNQEGETPLYVAAES---GHALIVEEMLQHM  182 (630)
Q Consensus       110 ~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~----~~n~~g~TpLh~Aa~~---g~~eiv~~LL~~~  182 (630)
                      .+..+..|..|.||||.||+.|+.++|+.|++.+....  ..++    ..|..|.||||+|+..   |+.++|++|++++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g   80 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK--KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA   80 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC--CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc--cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence            34567889999999999999999999999998765431  2222    3478999999999987   9999999999983


Q ss_pred             CccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhcc--
Q 006802          183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN--  260 (630)
Q Consensus       183 ~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~--  260 (630)
                      ..  ..                    .++.+++...   ...|..|.||||+|+..|+.+++++|+++|+++ +..+.  
T Consensus        81 a~--~~--------------------~~~~~i~~~~---~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~  134 (273)
T 2pnn_A           81 RK--TD--------------------SLKQFVNASY---TDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGD  134 (273)
T ss_dssp             HH--TT--------------------CHHHHHTCCC---CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSG
T ss_pred             cc--cc--------------------chhHHhhccc---ccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Ccccccc
Confidence            21  10                    0112222111   112345555555555555555555555555554 33333  


Q ss_pred             ------------CCCcHHHHHHHcCCHHHHHHHHh---CCCCCCcccCCCCCchhhhhccCCC---------HHHHHHhh
Q 006802          261 ------------NGKTVLHSAARMGHLEVVKALVS---KDPSTGFRTDKKGQTALHMAVKGQN---------EDIVLELI  316 (630)
Q Consensus       261 ------------~g~tpLh~Aa~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~Aa~~g~---------~~iv~~Ll  316 (630)
                                  .|.||||+|+..|+.+++++|++   .+.+++.. |..|+||||+|+..|+         .+++++|+
T Consensus       135 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll  213 (273)
T 2pnn_A          135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR-DSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL  213 (273)
T ss_dssp             GGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceee-CCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH
Confidence                        57777777777777777777777   66666554 6777777777777666         67777777


Q ss_pred             cCCCCcc------cccCCCCChHHHHHHHhCcHHHHHHHhcccCC-CcccccCCCCCH
Q 006802          317 RPDPSVL------KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI-DVNSLNKAGESP  367 (630)
Q Consensus       317 ~~~~~~~------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~-~in~~n~~G~Tp  367 (630)
                      +.++++.      +.+|.+|+||||+|+..|+.+++++|++ .|+ |+......+.+|
T Consensus       214 ~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHHH  270 (273)
T ss_dssp             HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTC------------
T ss_pred             HhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHH-CCCCCchhhhhhhhhc
Confidence            7665542      4588999999999999999999999998 666 777666666555

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.9e-30  Score=241.28  Aligned_cols=158  Identities=37%  Similarity=0.566  Sum_probs=138.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCH
Q 006802          230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  309 (630)
Q Consensus       230 tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~  309 (630)
                      ++|+.|+..|+.++|+.|++.|+++ +..|.+|.||||+|+..|+.++++.|++.++++... |..|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCCH
Confidence            5788899999999999999998887 778888999999999999999999999998888765 88899999999999999


Q ss_pred             HHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 006802          310 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  389 (630)
Q Consensus       310 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~  389 (630)
                      +++++|++.++++ |.+|.+|+||||+|+..|+.++|++|++ .|++++.+|..|+|||++|+..|+.+++++|+++||+
T Consensus        84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999988876 8889999999999999999999999998 8999999999999999999999999999999999997


Q ss_pred             Cc
Q 006802          390 HS  391 (630)
Q Consensus       390 ~~  391 (630)
                      ..
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=7.4e-32  Score=280.19  Aligned_cols=262  Identities=16%  Similarity=0.115  Sum_probs=199.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc-------
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI-------  189 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~-------  189 (630)
                      +..+.+|+|.    ...++|++|++.+.+      ++..+..|.|+++     |+.++|++||+++.......       
T Consensus        20 ~~~~~~~~~~----~~~dlv~~ll~~ga~------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~   84 (327)
T 1sw6_A           20 NDRTAGPIIT----FTHDLTSDFLSSPLK------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNN   84 (327)
T ss_dssp             -----CCEEE----CCTTCCCSTTTSSCC------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC------------
T ss_pred             ccccccchhh----hcCchHHHHhhCCcc------cccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhc
Confidence            4556667773    556789999998764      6788899999988     99999999998842211100       


Q ss_pred             --------CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccC
Q 006802          190 --------PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN  261 (630)
Q Consensus       190 --------~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~  261 (630)
                              ......+.+|.|+..+..++++.|++.+.++....|..|.||||+|+..|+.++|++|+++|+++ +..|.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~  163 (327)
T 1sw6_A           85 DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNM  163 (327)
T ss_dssp             -------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTT
T ss_pred             ccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence                    01111233578888888899999999988854437999999999999999999999999999998 788999


Q ss_pred             CCcHHHHHHHcCC---HHHHHHHHhCCCCCCcccCCCCCchhhhhcc----CCCHHHHHHhhcCC---------------
Q 006802          262 GKTVLHSAARMGH---LEVVKALVSKDPSTGFRTDKKGQTALHMAVK----GQNEDIVLELIRPD---------------  319 (630)
Q Consensus       262 g~tpLh~Aa~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~----~g~~~iv~~Ll~~~---------------  319 (630)
                      |.||||+|+..|+   .++++.|++.+.......|..|+||||+|+.    .|+.+++++|++.+               
T Consensus       164 g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~  243 (327)
T 1sw6_A          164 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG  243 (327)
T ss_dssp             CCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC
T ss_pred             CCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhh
Confidence            9999999999998   6777777777633334459999999999999    89999999998762               


Q ss_pred             ----CCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Q 006802          320 ----PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHG  395 (630)
Q Consensus       320 ----~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~  395 (630)
                          ...++.+|..|.||||.|+.      +++|++.   ++|.+|..|+||||+|+..|+.+++++|+++|+++...+.
T Consensus       244 ~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~  314 (327)
T 1sw6_A          244 TNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  314 (327)
T ss_dssp             ----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             hhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence                23348899999999999986      8999984   6899999999999999999999999999999999999888


Q ss_pred             CCCchHHH
Q 006802          396 KPPSATKQ  403 (630)
Q Consensus       396 ~~~~~~~~  403 (630)
                      .+.+|...
T Consensus       315 ~G~TpL~~  322 (327)
T 1sw6_A          315 SGLRPVDF  322 (327)
T ss_dssp             TSCCGGGG
T ss_pred             CCCCHHHH
Confidence            88887643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.6e-30  Score=260.01  Aligned_cols=208  Identities=22%  Similarity=0.281  Sum_probs=126.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhc----CCCCCCcHHHHHHHh---CCHHHHHHHHhcCCccccccCCC
Q 006802          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK----KNQEGETPLYVAAES---GHALIVEEMLQHMNLETASIPAR  192 (630)
Q Consensus       120 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~----~n~~g~TpLh~Aa~~---g~~eiv~~LL~~~~~~~~~~~~~  192 (630)
                      |.||||.||+.|+.+.|+.|++.....  ...++.    .|..|.||||+|+..   |+.++|++|++.+  .+.+..+ 
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~~~~~-   76 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDSGNPK-   76 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHTTCSS-
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--Ccccchh-
Confidence            566666666666665444444321111  222343    555666666666666   6666666666552  1111000 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccC-----------
Q 006802          193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-----------  261 (630)
Q Consensus       193 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~-----------  261 (630)
                                         .++..   .....|..|.||||+|+..|+.+++++|+++|+++ +..+..           
T Consensus        77 -------------------~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~  133 (256)
T 2etb_A           77 -------------------PLVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCF  133 (256)
T ss_dssp             -------------------CGGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCC
T ss_pred             -------------------hhccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Ccccccccccccccccc
Confidence                               00000   00112344556666666666666666666665554 333333           


Q ss_pred             --CCcHHHHHHHcCCHHHHHHHHh---CCCCCCcccCCCCCchhhhhcc--CCCHH-------HHHHhhcCCCCcc----
Q 006802          262 --GKTVLHSAARMGHLEVVKALVS---KDPSTGFRTDKKGQTALHMAVK--GQNED-------IVLELIRPDPSVL----  323 (630)
Q Consensus       262 --g~tpLh~Aa~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~Aa~--~g~~~-------iv~~Ll~~~~~~~----  323 (630)
                        |.||||+|+..|+.+++++|++   .+++++.. |..|+||||+|+.  .++.+       ++++|++.++++.    
T Consensus       134 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~  212 (256)
T 2etb_A          134 YFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT-DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ  212 (256)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc-CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccc
Confidence              7777777777777777777777   66666654 7777777777776  66666       7788877765542    


Q ss_pred             --cccCCCCChHHHHHHHhCcHHHHHHHhcccCCCc
Q 006802          324 --KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV  357 (630)
Q Consensus       324 --n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~i  357 (630)
                        +.+|.+|+||||+|+..|+.+++++|++ +|.+.
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~  247 (256)
T 2etb_A          213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQ-REFSG  247 (256)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHHHH
T ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCC
Confidence              7789999999999999999999999998 55443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=4e-29  Score=233.55  Aligned_cols=159  Identities=32%  Similarity=0.483  Sum_probs=121.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      ++|+.|+..|+.++|+.|++.+++ ++..|..|.||||+|+..++.+++++|++.|+++ +..|.+|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence            357777777777777777777776 4566777788888888888888888888877776 66777788888888888888


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCC
Q 006802          276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI  355 (630)
Q Consensus       276 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  355 (630)
                      +++++|++.+++++.. |..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|++ .|+
T Consensus        84 ~~v~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA  160 (169)
T 4gpm_A           84 EVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEK-QGG  160 (169)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHT-C--
T ss_pred             HHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence            8888888888777654 778888888888888888888888887765 7788888888888888888888888888 788


Q ss_pred             Cccc
Q 006802          356 DVNS  359 (630)
Q Consensus       356 ~in~  359 (630)
                      +++.
T Consensus       161 ~ie~  164 (169)
T 4gpm_A          161 WLEH  164 (169)
T ss_dssp             ----
T ss_pred             CcCC
Confidence            7754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.5e-30  Score=258.04  Aligned_cols=164  Identities=26%  Similarity=0.319  Sum_probs=125.2

Q ss_pred             CCCChHHHHHH---HcCCHHHHHHHHhcCCch----------hhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCccc
Q 006802          226 LSCSTALHTAA---AQGHIDVVNFLLEIDSNL----------AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT  292 (630)
Q Consensus       226 ~~g~tpL~~Aa---~~g~~e~v~~LL~~~~~~----------~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~  292 (630)
                      ..|.||||+|+   ..|+.+++++|++.|++.          ....|..|.||||+|+..|+.+++++|++.+++++.. 
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-  122 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-  122 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-
Confidence            34445555444   334555555555443321          1222346777777777777777777777777766654 


Q ss_pred             C--------------CCCCchhhhhccCCCHHHHHHhhc---CCCCcccccCCCCChHHHHHHHhCc---------HHHH
Q 006802          293 D--------------KKGQTALHMAVKGQNEDIVLELIR---PDPSVLKLEDNKGNTALHIAIKKGR---------TQIV  346 (630)
Q Consensus       293 d--------------~~g~t~Lh~Aa~~g~~~iv~~Ll~---~~~~~~n~~d~~G~TpLh~A~~~g~---------~~iv  346 (630)
                      +              ..|.||||+|+..|+.+++++|++   .+.++ +.+|.+|+||||+|+..++         .+++
T Consensus       123 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v  201 (260)
T 3jxi_A          123 ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMY  201 (260)
T ss_dssp             CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence            3              579999999999999999999999   66665 8999999999999998887         7999


Q ss_pred             HHHhcccCCCc-------ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 006802          347 RCLLSIEGIDV-------NSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  392 (630)
Q Consensus       347 ~~Ll~~~g~~i-------n~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~  392 (630)
                      ++|++ .|+++       +..|..|.||||+|+..|+.+++++|+++|++...
T Consensus       202 ~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          202 DLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            99999 88998       77999999999999999999999999999987543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=9.3e-30  Score=254.92  Aligned_cols=210  Identities=20%  Similarity=0.211  Sum_probs=130.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCC----CCCCcHHHHHH---HhCCHHHHHHHHhcCCcccccc
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKN----QEGETPLYVAA---ESGHALIVEEMLQHMNLETASI  189 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n----~~g~TpLh~Aa---~~g~~eiv~~LL~~~~~~~~~~  189 (630)
                      +..|.|+||.||+.|+.+.++.|++.....  ...++..+    ..|.||||+|+   ..|+.++|++|++.+....   
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~---   76 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTG---   76 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTT---
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccccc---
Confidence            455666777777777766666666532111  11122222    44666666666   4566666666666521100   


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhc----------
Q 006802          190 PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR----------  259 (630)
Q Consensus       190 ~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d----------  259 (630)
                                      ..   ..++.   ......|..|.||||+|+..|+.+++++|+++|+++ +..+          
T Consensus        77 ----------------~~---~~~~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~  133 (260)
T 3jxi_A           77 ----------------NM---REFIN---SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDE  133 (260)
T ss_dssp             ----------------CH---HHHHT---CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCC
T ss_pred             ----------------ch---Hhhhc---ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccc
Confidence                            00   00000   112223445666666666666666666666666665 3334          


Q ss_pred             ----cCCCcHHHHHHHcCCHHHHHHHHh---CCCCCCcccCCCCCchhhhhccCCC---------HHHHHHhhcCCCCc-
Q 006802          260 ----NNGKTVLHSAARMGHLEVVKALVS---KDPSTGFRTDKKGQTALHMAVKGQN---------EDIVLELIRPDPSV-  322 (630)
Q Consensus       260 ----~~g~tpLh~Aa~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~Aa~~g~---------~~iv~~Ll~~~~~~-  322 (630)
                          ..|.||||+|+..|+.+++++|++   .+.+++.. |..|+||||+|+..++         .+++++|++.++++ 
T Consensus       134 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          134 GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             CCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCccc-CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence                467777777777777777777777   66666654 7777777777776665         57777777766544 


Q ss_pred             -----ccccCCCCChHHHHHHHhCcHHHHHHHhcccCCC
Q 006802          323 -----LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  356 (630)
Q Consensus       323 -----~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  356 (630)
                           .+.+|.+|+||||+|+..|+.+++++|++ +|.+
T Consensus       213 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~  250 (260)
T 3jxi_A          213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR-REIA  250 (260)
T ss_dssp             TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHHH
T ss_pred             cccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH-hCCC
Confidence                 26788999999999999999999999998 5544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=6.9e-29  Score=251.38  Aligned_cols=189  Identities=24%  Similarity=0.318  Sum_probs=121.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHH---
Q 006802          160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA---  236 (630)
Q Consensus       160 ~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa---  236 (630)
                      .+++|.|+..|+.+.++.+++......++..|.+|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            56788888888888888888764333456677777777777777777777777777776446666777777777777   


Q ss_pred             --HcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHH
Q 006802          237 --AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE  314 (630)
Q Consensus       237 --~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~  314 (630)
                        ..++.+++++|++.|... ...+..|.||||+|+..|+.+++++|++.+++++.. |..|+||||+|+..|+.+++++
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHHH
Confidence              456667777777766544 445556666666666666666666666666655443 5555555555555555555555


Q ss_pred             hhc-CCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          315 LIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       315 Ll~-~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      |++ .+.++ +.+|.+|+||||+|+..|+.+++++|++
T Consensus       235 Ll~~~gad~-~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          235 LLAVPSCDI-SLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             HHTSTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhcCCCCC-cCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            555 33332 5555555555555555555555555554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=6.5e-29  Score=251.57  Aligned_cols=191  Identities=25%  Similarity=0.329  Sum_probs=175.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHH---
Q 006802          195 YDSFHVAAKQGHLEVLKELLGEFPN-LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA---  270 (630)
Q Consensus       195 ~t~Lh~A~~~g~~eiv~~Ll~~~~~-~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa---  270 (630)
                      .+++|.|+..|+.+.++.+++...+ .++..|..|.||||+|+..|+.+++++|++.|+...+..+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            3678999999999999999876544 356678999999999999999999999999998445888999999999999   


Q ss_pred             --HcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHH
Q 006802          271 --RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  348 (630)
Q Consensus       271 --~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~  348 (630)
                        ..++.++++.|++.+..... .+..|+||||+|+..|+.+++++|++.++++ |.+|.+|+||||+|+..|+.+++++
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHH
Confidence              67889999999999977765 4889999999999999999999999999886 9999999999999999999999999


Q ss_pred             HhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          349 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       349 Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      |++..|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            998789999999999999999999999999999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=4.3e-28  Score=226.96  Aligned_cols=164  Identities=27%  Similarity=0.360  Sum_probs=91.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC
Q 006802          229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  308 (630)
Q Consensus       229 ~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  308 (630)
                      .||||.|+..|+.++++.|++.+++..+..|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCCC
Confidence            345555555555555555555554433444555555555555555555555555555544433 4555555555555555


Q ss_pred             HHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 006802          309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  388 (630)
Q Consensus       309 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga  388 (630)
                      .+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus        82 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A           82 TDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            55555555555443 5556666666666666666666666665 566666666666666666666666666666666666


Q ss_pred             CCcccCC
Q 006802          389 AHSKDHG  395 (630)
Q Consensus       389 ~~~~~~~  395 (630)
                      +....+.
T Consensus       160 ~~~~~~~  166 (172)
T 3v30_A          160 KLFQSNL  166 (172)
T ss_dssp             HHSCC--
T ss_pred             HHhcccC
Confidence            5544433

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=5.1e-28  Score=226.46  Aligned_cols=170  Identities=28%  Similarity=0.336  Sum_probs=154.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG  273 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g  273 (630)
                      +.+|||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            4689999999999999999999999888889999999999999999999999999999987 778899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhccc
Q 006802          274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  353 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  353 (630)
                      +.+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus        81 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~  157 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIEN-H  157 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred             CHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHH-H
Confidence            999999999999998765 899999999999999999999999998876 8899999999999999999999999999 8


Q ss_pred             CCCcccccCCCCCH
Q 006802          354 GIDVNSLNKAGESP  367 (630)
Q Consensus       354 g~~in~~n~~G~Tp  367 (630)
                      ++++...|..|.||
T Consensus       158 ~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHSCC-------
T ss_pred             HHHHhcccCCCCCC
Confidence            99999999998887

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=5.9e-28  Score=230.40  Aligned_cols=162  Identities=25%  Similarity=0.296  Sum_probs=126.3

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhh
Q 006802          222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH  301 (630)
Q Consensus       222 ~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  301 (630)
                      +..|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++.++++... |..|.||||
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~  106 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLM  106 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHH
Confidence            345667777777777777777777777776665 556667777777777777777777777777766554 677777777


Q ss_pred             hhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 006802          302 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS  381 (630)
Q Consensus       302 ~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~  381 (630)
                      +|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.++++
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            777777777777777777665 7778888888888888888888888888 78888888888888888888888888888


Q ss_pred             HHHHcC
Q 006802          382 LLKEAG  387 (630)
Q Consensus       382 ~L~~~g  387 (630)
                      +|+++|
T Consensus       185 ~Ll~~~  190 (192)
T 2rfm_A          185 IFTEVR  190 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            888765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.9e-30  Score=273.14  Aligned_cols=246  Identities=22%  Similarity=0.221  Sum_probs=144.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc-ccccCCCCCC
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGY  195 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~-~~~~~~~~g~  195 (630)
                      +.++.||||.||+.|+.++|++|++.+.+.   ......|..|.||||+|+..|+.++|++|++++... ..+..+.+ .
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~---~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~  164 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSD---EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y  164 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CC---SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcH---HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence            344568888888888888888888776521   111233445677888888888888888888774210 01222222 7


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccc-cCCCCCChHHHHHH-HcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVM-TTDLSCSTALHTAA-AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG  273 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~-~~d~~g~tpL~~Aa-~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g  273 (630)
                      ||||+|+..|+.+++++|++++++... ..|..|.||||+|+ ..|+.+++++|++.|+        .|.||||.|+..|
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g  236 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYG  236 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTT
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCC
Confidence            888888888888888888888776432 24566778888888 8888888888887542        2678888888888


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHH---------------------------HHHhhcCCCCc----
Q 006802          274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI---------------------------VLELIRPDPSV----  322 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~i---------------------------v~~Ll~~~~~~----  322 (630)
                      +.+++++|++.+++....     .++++.|+.+|+.++                           +++|++.+...    
T Consensus       237 ~~evv~lL~~~ga~~~~~-----~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~  311 (376)
T 2aja_A          237 EKYVNPFIARHVNRLKEM-----HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP  311 (376)
T ss_dssp             TTTHHHHHHHHHHHHHHH-----HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSS
T ss_pred             CHHHHHHHHhcCcccccc-----cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhc
Confidence            888888888776654322     236666666665542                           22233211100    


Q ss_pred             ccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 006802          323 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  383 (630)
Q Consensus       323 ~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L  383 (630)
                      ....++.++||||+|+..|+.+++++|++ .   ....+..|+|++++|...|..++.+.-
T Consensus       312 ~g~~~n~~~~~L~~A~~~g~~e~v~lLl~-~---~~v~~~~~~~~~~~~~~~~~~~~~~~~  368 (376)
T 2aja_A          312 TATIPGDANELLRLALRLGNQGACALLLS-I---PSVLALTKANNYYINETGGRLDLRAVA  368 (376)
T ss_dssp             CCSSTTCCCHHHHHHHHHTCTTHHHHHTT-S---HHHHHSCC-------------------
T ss_pred             cCCCCCCccHHHHHHHHcCcHHHHHHHHc-C---hHHHHHHHHhccccccccccccHHHHH
Confidence            01223456677888888888888888877 2   355677777888777777777766543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.7e-27  Score=221.80  Aligned_cols=161  Identities=25%  Similarity=0.281  Sum_probs=129.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccC
Q 006802          227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  306 (630)
Q Consensus       227 ~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  306 (630)
                      .|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHc
Confidence            4567777777777777777777777664 566777777777777777777777777777776654 77778888888888


Q ss_pred             CCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       307 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      |+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            8888888888777665 7788889999999999999999999998 7899999999999999999999999999999888


Q ss_pred             CCCCc
Q 006802          387 GAAHS  391 (630)
Q Consensus       387 ga~~~  391 (630)
                      +++..
T Consensus       158 ~~~~~  162 (167)
T 3v31_A          158 LLKLL  162 (167)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            76543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.4e-27  Score=220.39  Aligned_cols=159  Identities=31%  Similarity=0.433  Sum_probs=132.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       225 d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                      ...+.+||+.|+..|+.+++++|++.|.++ +..|.+|.||||+|+..|+.+++++|++.+++.... |..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHH
Confidence            445567888888888888888888888776 566778888888888888888888888888777654 778888888888


Q ss_pred             cCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 006802          305 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  384 (630)
Q Consensus       305 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~  384 (630)
                      ..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            888888888888887765 7888889999999999999999999998 78999999999999999999999999999998


Q ss_pred             HcC
Q 006802          385 EAG  387 (630)
Q Consensus       385 ~~g  387 (630)
                      ++|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.8e-27  Score=220.24  Aligned_cols=157  Identities=28%  Similarity=0.473  Sum_probs=118.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCC
Q 006802          228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  307 (630)
Q Consensus       228 g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g  307 (630)
                      ..||||.|+..|+.+++++|++.|.++ +..+..|.||||+|+. |+.+++++|++.++++... |..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcC
Confidence            457777777777777777777777665 5566777777777777 7777777777777766654 777777777777777


Q ss_pred             CHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCC-cccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          308 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID-VNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       308 ~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~-in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      +.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++ ++..|..|.||||+|+..++.+++++|+++
T Consensus        82 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           82 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            777777777777655 7778888888888888888888888887 5665 578888888888888888888888888888


Q ss_pred             CCC
Q 006802          387 GAA  389 (630)
Q Consensus       387 ga~  389 (630)
                      ||+
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=7.1e-27  Score=222.88  Aligned_cols=162  Identities=23%  Similarity=0.248  Sum_probs=120.8

Q ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCC
Q 006802          113 KDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPAR  192 (630)
Q Consensus       113 ~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~  192 (630)
                      ++.+|..|.||||+||..|+.+++++|++.+.+      ++..|..|.||||+|+..|+.+++++|+++  +.+++..+.
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~   99 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK------LEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDF   99 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCT
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc------cccccccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCC
Confidence            456677788888888888888888888876543      456677778888888888888888888876  345666677


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHc
Q 006802          193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM  272 (630)
Q Consensus       193 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~  272 (630)
                      .|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus       100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~  177 (192)
T 2rfm_A          100 SGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIF  177 (192)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHh
Confidence            777777777777777777777777766 4456777777777777777777777777777775 56677777777777777


Q ss_pred             CCHHHHHHHHhC
Q 006802          273 GHLEVVKALVSK  284 (630)
Q Consensus       273 g~~~iv~~Ll~~  284 (630)
                      |+.+++++|++.
T Consensus       178 ~~~~~v~~Ll~~  189 (192)
T 2rfm_A          178 GRQEVIKIFTEV  189 (192)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CcHHHHHHHHhc
Confidence            777777777764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2e-29  Score=248.06  Aligned_cols=188  Identities=20%  Similarity=0.186  Sum_probs=105.1

Q ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHH
Q 006802          154 KKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALH  233 (630)
Q Consensus       154 ~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~  233 (630)
                      ..+..|.||||+|+..|+.++|++|++.  +.+++..+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh   92 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLH   92 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHH
Confidence            3344455556666666666666666654  234445555566666666666666666666655554 3344555666666


Q ss_pred             HHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHH--HHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHH
Q 006802          234 TAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA--ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI  311 (630)
Q Consensus       234 ~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~A--a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~i  311 (630)
                      +|+..|+.+++++|++.|+++....+.+|.||||+|  +..|+.+++++|++.++++... |..|.||++.++..+..  
T Consensus        93 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~~~~~~~l~~~~~~~~~--  169 (229)
T 2vge_A           93 CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-NSGAVYALWDYSAEFGD--  169 (229)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-GGGEEEESSCBCCSSTT--
T ss_pred             HHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-cCCchHHHHHHhhcccc--
Confidence            666666666666666666555222234566666666  5666666666666665555543 55566666644444322  


Q ss_pred             HHHhhcCCCCc-ccccCCCCChHHHHHHHhCcHHHHHH
Q 006802          312 VLELIRPDPSV-LKLEDNKGNTALHIAIKKGRTQIVRC  348 (630)
Q Consensus       312 v~~Ll~~~~~~-~n~~d~~G~TpLh~A~~~g~~~iv~~  348 (630)
                       +.|++.+.++ ++.+|.+|+||||+|+..|+.++|+.
T Consensus       170 -~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          170 -ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             -BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             -ccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence             3445554442 35556666666666666666665554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=5.9e-27  Score=216.74  Aligned_cols=158  Identities=28%  Similarity=0.368  Sum_probs=112.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG  273 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g  273 (630)
                      ..||||.|+..|+.+++++|++.+++ .+..|..|.||||+|+. |+.+++++|++.|+++ +..+..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            34666666666666666666666655 34456667777777766 7777777777776665 556667777777777777


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhccc
Q 006802          274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  353 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  353 (630)
                      +.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+++.++.+|..|.||||+|+..|+.+++++|++ .
T Consensus        82 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~  159 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA-N  159 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-T
T ss_pred             CHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-h
Confidence            777777777777666554 67777777777777777777777777776667778888888888888888888888887 6


Q ss_pred             CCC
Q 006802          354 GID  356 (630)
Q Consensus       354 g~~  356 (630)
                      |+|
T Consensus       160 GAd  162 (162)
T 1ihb_A          160 GAG  162 (162)
T ss_dssp             C--
T ss_pred             CCC
Confidence            654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=2.9e-27  Score=219.77  Aligned_cols=160  Identities=28%  Similarity=0.378  Sum_probs=118.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       225 d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                      |..|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHH
Confidence            4455666777776677777766666544433445566667777777777777777777776666554 667777777777


Q ss_pred             cCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 006802          305 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  384 (630)
Q Consensus       305 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~  384 (630)
                      ..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|.. ++.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            777777777777776665 7778888899999999999999999988 788899899999999998776 8889999998


Q ss_pred             HcCC
Q 006802          385 EAGA  388 (630)
Q Consensus       385 ~~ga  388 (630)
                      ++||
T Consensus       161 ~~gA  164 (165)
T 3twr_A          161 GDAA  164 (165)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            8876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.2e-26  Score=211.03  Aligned_cols=150  Identities=29%  Similarity=0.389  Sum_probs=121.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC
Q 006802          229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  308 (630)
Q Consensus       229 ~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  308 (630)
                      .|||+.|+..|+.+++++|++.|++..  .+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCh
Confidence            467788888888888888887777652  4667788888888888888888888777776654 7778888888888888


Q ss_pred             HHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 006802          309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  383 (630)
Q Consensus       309 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L  383 (630)
                      .+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88888888877665 7788888899999988888899998888 7888888888888999999888888888876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=8.4e-27  Score=219.83  Aligned_cols=165  Identities=25%  Similarity=0.318  Sum_probs=118.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccC
Q 006802          227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  306 (630)
Q Consensus       227 ~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  306 (630)
                      .+.+|||.|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence            34566666666666666666666644444556666666666666666666666666666666544 66677777777777


Q ss_pred             CCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       307 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      |+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++
T Consensus        83 ~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            7777777777776655 7778888888888888888888888888 7888888888888888888888888888888888


Q ss_pred             CCCCcccC
Q 006802          387 GAAHSKDH  394 (630)
Q Consensus       387 ga~~~~~~  394 (630)
                      |++.....
T Consensus       161 g~~~~~~~  168 (179)
T 3f6q_A          161 GQNLNRIP  168 (179)
T ss_dssp             TCCCSCBC
T ss_pred             hcCcccCC
Confidence            88876543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=4.9e-26  Score=211.82  Aligned_cols=159  Identities=23%  Similarity=0.305  Sum_probs=126.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHH
Q 006802          119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF  198 (630)
Q Consensus       119 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~L  198 (630)
                      .|.||||.||..|+.+++++|++.+..      ++.+|..|.||||+|+..|+.+++++|+++  +.+++..+..|.|||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L   73 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV------INHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESAL   73 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHH
Confidence            477888888888888888888887543      677788888888888888888888888887  455666777888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHH
Q 006802          199 HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV  278 (630)
Q Consensus       199 h~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv  278 (630)
                      |+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A           74 SLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHH
Confidence            888888888888888888777 4456777888888888888888888888888776 66777888888888888888888


Q ss_pred             HHHHhCCCC
Q 006802          279 KALVSKDPS  287 (630)
Q Consensus       279 ~~Ll~~~~~  287 (630)
                      ++|++++++
T Consensus       152 ~~L~~~~~~  160 (167)
T 3v31_A          152 QVIESHLLK  160 (167)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888876544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=6.9e-26  Score=211.49  Aligned_cols=160  Identities=29%  Similarity=0.381  Sum_probs=120.1

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCC
Q 006802          116 PGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGY  195 (630)
Q Consensus       116 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~  195 (630)
                      .+..+.|+||.||+.|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.+++++|+++  +.+.+..+..|.
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~   81 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGAD------VNAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGM   81 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCC
Confidence            445667788888888888888888877653      566777888888888888888888888876  455666777788


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      ||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.
T Consensus        82 t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~  159 (169)
T 2y1l_E           82 TPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNE  159 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCH
Confidence            888888888888888888877776 3456777778888888888888888888877775 56677778888888888888


Q ss_pred             HHHHHHHhCC
Q 006802          276 EVVKALVSKD  285 (630)
Q Consensus       276 ~iv~~Ll~~~  285 (630)
                      +++++|++.|
T Consensus       160 ~~~~~L~~~G  169 (169)
T 2y1l_E          160 DLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHTC-
T ss_pred             HHHHHHHHcC
Confidence            8887777653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=1.6e-26  Score=217.88  Aligned_cols=166  Identities=19%  Similarity=0.243  Sum_probs=95.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG  273 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g  273 (630)
                      +.++||.|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence            4455555555555555555555544444455555555555555555555555555555554 445555566666666666


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhccc
Q 006802          274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  353 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  353 (630)
                      +.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||+|+..++.+++++|++ .
T Consensus        84 ~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~-~  160 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK-M  160 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHH-T
T ss_pred             CHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHH-h
Confidence            666666666665555443 555666666666666666666666655544 5556666666666666666666666666 5


Q ss_pred             CCCcccccCC
Q 006802          354 GIDVNSLNKA  363 (630)
Q Consensus       354 g~~in~~n~~  363 (630)
                      |++++..+..
T Consensus       161 g~~~~~~~~~  170 (179)
T 3f6q_A          161 GQNLNRIPYK  170 (179)
T ss_dssp             TCCCSCBCCC
T ss_pred             hcCcccCCcc
Confidence            6666555443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.9e-28  Score=257.99  Aligned_cols=242  Identities=22%  Similarity=0.224  Sum_probs=182.4

Q ss_pred             CChHHHHHHH-cCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc-ccccCCCCCCcH
Q 006802          120 GDLQLHLAAR-AGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGYDS  197 (630)
Q Consensus       120 g~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~-~~~~~~~~g~t~  197 (630)
                      +.+.++.|+. .++.+.++++++.+.             ++.||||+|+..|+.++|++|++++... .....+..|.||
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~g~-------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tp  131 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKKGI-------------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQA  131 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHHTC-------------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCC-------------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCH
Confidence            3467777776 477888888887644             3459999999999999999999985322 112344568899


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhh-hhccCCCcHHHHHH-HcC
Q 006802          198 FHVAAKQGHLEVLKELLGEFPNLV--MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK-IARNNGKTVLHSAA-RMG  273 (630)
Q Consensus       198 Lh~A~~~g~~eiv~~Ll~~~~~~~--~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~-~~d~~g~tpLh~Aa-~~g  273 (630)
                      ||+|+..|+.+++++|++++++..  +..+.+ .||||+|+..|+.+++++|+++|+++.. ..|.+|.||||+|+ ..|
T Consensus       132 L~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G  210 (376)
T 2aja_A          132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG  210 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC
Confidence            999999999999999999997521  112222 8999999999999999999999998733 27888999999999 999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHh-------------
Q 006802          274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK-------------  340 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~-------------  340 (630)
                      +.++|++|++.++        .|.||||.|+.+|+.+++++|++.++++ +..|.    +++.|+..             
T Consensus       211 ~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~-~~~~~----~l~~A~~~g~~~vv~~~~~~~  277 (376)
T 2aja_A          211 HHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRL-KEMHD----AFKLSNPDGVFDLVTKSECLQ  277 (376)
T ss_dssp             CHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHH-HHHHT----TTTTTSSSSCCCCSSHHHHHH
T ss_pred             CHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccc-ccccH----HHHHHHHCCChhhhcHHhhhh
Confidence            9999999998652        3889999999999999999999876543 22221    22222222             


Q ss_pred             --------------CcHHHHHHHhcccCCC----cccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 006802          341 --------------GRTQIVRCLLSIEGID----VNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  388 (630)
Q Consensus       341 --------------g~~~iv~~Ll~~~g~~----in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga  388 (630)
                                    +..+.+++|++..++.    .....+.+.|||++|+..|+.+++++|++.|.
T Consensus       278 ~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             HHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             hHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChH
Confidence                          2355667776632211    11223457789999999999999999998764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=3.5e-28  Score=239.14  Aligned_cols=201  Identities=18%  Similarity=0.161  Sum_probs=171.4

Q ss_pred             cccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccc
Q 006802          109 RKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETAS  188 (630)
Q Consensus       109 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~  188 (630)
                      .....+..+..|.||||.||..|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.++|++|++.  +.+++
T Consensus        10 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n   81 (229)
T 2vge_A           10 SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND------PSQPNEEGITALHNAICGANYSIVDFLITA--GANVN   81 (229)
T ss_dssp             CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTT
T ss_pred             CCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCC
Confidence            3344556677889999999999999999999998764      677899999999999999999999999998  56778


Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHH--HHcCCHHHHHHHHhcCCchhhhhccCCCcHH
Q 006802          189 IPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA--AAQGHIDVVNFLLEIDSNLAKIARNNGKTVL  266 (630)
Q Consensus       189 ~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~A--a~~g~~e~v~~LL~~~~~~~~~~d~~g~tpL  266 (630)
                      ..|..|.||||+|+..|+.+++++|++.++++....+..|.||||+|  +..|+.+++++|++.|+++ +..|..|.||+
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l  160 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYAL  160 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEES
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHH
Confidence            88999999999999999999999999999996655567999999999  9999999999999999987 67788999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCC-cccCCCCCchhhhhccCCCHHHHHHh-hcCCCC
Q 006802          267 HSAARMGHLEVVKALVSKDPSTG-FRTDKKGQTALHMAVKGQNEDIVLEL-IRPDPS  321 (630)
Q Consensus       267 h~Aa~~g~~~iv~~Ll~~~~~~~-~~~d~~g~t~Lh~Aa~~g~~~iv~~L-l~~~~~  321 (630)
                      +.++..+..   +.|++.+++.. ..+|..|+||||+|+..|+.++|+.. ++..+.
T Consensus       161 ~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~  214 (229)
T 2vge_A          161 WDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR  214 (229)
T ss_dssp             SCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCC
T ss_pred             HHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCC
Confidence            976655433   57788887732 33588999999999999999999764 444443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=9.5e-26  Score=206.84  Aligned_cols=150  Identities=26%  Similarity=0.346  Sum_probs=105.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC
Q 006802          195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH  274 (630)
Q Consensus       195 ~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~  274 (630)
                      .++||.|+..|+.+++++|++.+++..  .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence            356666666666666666666666532  4566677777777777777777777776665 5566667777777777777


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHH
Q 006802          275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  349 (630)
Q Consensus       275 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~L  349 (630)
                      .+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            77777777777766554 677777777777777777777777776665 67777778888888888887777765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=7.8e-26  Score=207.88  Aligned_cols=152  Identities=26%  Similarity=0.402  Sum_probs=97.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC
Q 006802          229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  308 (630)
Q Consensus       229 ~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  308 (630)
                      .||||.|+..|+.+++++|++......+..+..|.||||+ +..|+.+++++|++.++++... |..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCc
Confidence            3566666666666666666655222224455566666666 6666666666666666655443 5666666666666666


Q ss_pred             HHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 006802          309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  385 (630)
Q Consensus       309 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~  385 (630)
                      .+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ . ++++.+|..|.||||+|+..++.+++++|++
T Consensus        81 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            66666666666544 6666677777777777777777777776 3 6677777777777777777777777777665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=1.5e-25  Score=208.00  Aligned_cols=160  Identities=24%  Similarity=0.275  Sum_probs=115.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHH
Q 006802          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA  235 (630)
Q Consensus       156 n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~A  235 (630)
                      |..|.||||.|+..|+.+++++|++.. .......+..|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHH
Confidence            455677777777777777777777652 334455566677777777777777777777777766 445667777888888


Q ss_pred             HHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHh
Q 006802          236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL  315 (630)
Q Consensus       236 a~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~L  315 (630)
                      +..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+. ++.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCChhHhHhc-CChHHHHHH
Confidence            8888888888888877776 566777888888888888888888888877776654 7778888888666 777888777


Q ss_pred             hcCCC
Q 006802          316 IRPDP  320 (630)
Q Consensus       316 l~~~~  320 (630)
                      ++.++
T Consensus       160 ~~~gA  164 (165)
T 3twr_A          160 RGDAA  164 (165)
T ss_dssp             HTC--
T ss_pred             hhccc
Confidence            77653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2e-25  Score=205.13  Aligned_cols=152  Identities=25%  Similarity=0.337  Sum_probs=98.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC
Q 006802          195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH  274 (630)
Q Consensus       195 ~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~  274 (630)
                      .||||.|+..|+.+++++|++..+...+..|..|.||||+ +..|+.+++++|+++|+++ +..|..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc
Confidence            3556666666666666666655322344455566666666 6666666666666666654 4556666666666666666


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       275 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      .+++++|++.++++... |..|+||||+|+..|+.+++++|++. .+ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus        81 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            66666666666665543 66677777777777777777777766 33 36677777777777777777777777775

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=2.8e-25  Score=219.76  Aligned_cols=181  Identities=20%  Similarity=0.193  Sum_probs=113.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCc
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD  196 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t  196 (630)
                      +..|.||||.|++.|+.+.++.|++.+.+.      + .+..|.||||.|+..|+.++|++|++.  +.+++..|..|.|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~------~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t   72 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV------K-FNPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGIT   72 (239)
T ss_dssp             ------------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc------c-cCchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC
Confidence            356888888888888888888888877642      2 246678888888888888888888877  3466777888888


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCC-cHHHHH--HHcC
Q 006802          197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGK-TVLHSA--ARMG  273 (630)
Q Consensus       197 ~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~-tpLh~A--a~~g  273 (630)
                      |||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|. ||||+|  +..|
T Consensus        73 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g  150 (239)
T 1ycs_B           73 ALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEG  150 (239)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhc
Confidence            88888888888888888888777 4567778888888888888888888888888887 44555554 888888  6778


Q ss_pred             CHHHHHHHHhCCCCCCcc--------cCCCCCchhhhhccCCC
Q 006802          274 HLEVVKALVSKDPSTGFR--------TDKKGQTALHMAVKGQN  308 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~~~~--------~d~~g~t~Lh~Aa~~g~  308 (630)
                      +.+++++|++.+++....        .+..+.++++++.+.|.
T Consensus       151 ~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          151 YTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             cHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            888888888876665432        25567777777777765

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=1.2e-25  Score=222.52  Aligned_cols=206  Identities=19%  Similarity=0.215  Sum_probs=133.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHH
Q 006802          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA  235 (630)
Q Consensus       156 n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~A  235 (630)
                      +..|.||||.|+..|+.++++.|++++  .+++. +..|.||||.|+..|+.+++++|++.+++ ++..|..|.||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHH
Confidence            356899999999999999999999884  33343 36788999999999999999999998886 567788999999999


Q ss_pred             HHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCC-chhhhh--ccCCCHHHH
Q 006802          236 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQ-TALHMA--VKGQNEDIV  312 (630)
Q Consensus       236 a~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A--a~~g~~~iv  312 (630)
                      +..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|++.++++... +..|. ||||+|  +..|+.+++
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM-TYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee-cCCCCcchHHHHHHhhhccHHHH
Confidence            9999999999999999887 778889999999999999999999999999988776 54444 999998  788889999


Q ss_pred             HHhhcCCCCcccc---------cCCCCChHHHHHHHhCcHHHHHHHhcccCCC------cccccCCCCCHHHHH
Q 006802          313 LELIRPDPSVLKL---------EDNKGNTALHIAIKKGRTQIVRCLLSIEGID------VNSLNKAGESPLDVA  371 (630)
Q Consensus       313 ~~Ll~~~~~~~n~---------~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~------in~~n~~G~TpL~~A  371 (630)
                      ++|++.+++. +.         .|..+.+++++|...|.  +++.|.+ .+.+      ....+..|.+|.++.
T Consensus       156 ~~Ll~~~a~~-~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~-~~~~~~~Ww~~~~~~~~G~~P~~yv  225 (239)
T 1ycs_B          156 QFLYGVQEKM-GIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR-EDEDEIEWWWARLNDKEGYVPRNLL  225 (239)
T ss_dssp             HHHHHHHHHT-TTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC-CTTSCSSEEEEEETTEEEEEEGGGE
T ss_pred             HHHHHhhhcc-cccccceEEEEeccCCCCCCcccccCCC--EEEEEEe-cCCCCCCEEEEEECCcEEEeehHHe
Confidence            9999876543 22         36677888888877775  3443433 2322      123345555665543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=6.5e-24  Score=190.58  Aligned_cols=130  Identities=18%  Similarity=0.272  Sum_probs=121.5

Q ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCC-CChHH
Q 006802          256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK-GNTAL  334 (630)
Q Consensus       256 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~-G~TpL  334 (630)
                      +..+..|.||||+|+..|+.+++++|++.++++... |..|+||||+|+. ++.+++++|++.+.++ +.+|.. |+|||
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L   82 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV   82 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence            567888999999999999999999999999888765 8999999999999 9999999999998876 888999 99999


Q ss_pred             HHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 006802          335 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  389 (630)
Q Consensus       335 h~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~  389 (630)
                      |+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus        83 ~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999 8999999999999999999999999999999999985

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=2.8e-24  Score=203.93  Aligned_cols=155  Identities=12%  Similarity=0.124  Sum_probs=92.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL----EVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       229 ~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                      .++|+.|+..|+.+.++.+++.+.+.  ..+..|+||||+|+..|+.    +++++|++.|++++.. |..|+||||+|+
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~TpLh~a~   83 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR-TKEGTTLFFPLF   83 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC-CTTCCCTHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC-CCCCCcHHHHHH
Confidence            34555666666666555555554332  1124456666666665543    3566666666655543 556666666666


Q ss_pred             cCCC------HHHHHHhhcCCCCcccccCCCCC-hHHHHHHHh-----CcHHHHHHHhcccCCCcccccCCCCCHHHHHH
Q 006802          305 KGQN------EDIVLELIRPDPSVLKLEDNKGN-TALHIAIKK-----GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  372 (630)
Q Consensus       305 ~~g~------~~iv~~Ll~~~~~~~n~~d~~G~-TpLh~A~~~-----g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~  372 (630)
                      ..++      .+++++|+++|+++ |.+|..|+ ||||+|+..     ++.+++++|++..|++++.+|..|.||||+|+
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            5554      35566666666554 66666666 666666662     33456777776457777777777777777777


Q ss_pred             HcCCHHHHHHHHHcC
Q 006802          373 KLGNTELFSLLKEAG  387 (630)
Q Consensus       373 ~~~~~~iv~~L~~~g  387 (630)
                      ..++.+++++|.++.
T Consensus       163 ~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          163 RCQKPIALKMMEDYI  177 (186)
T ss_dssp             TTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            777777777776654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=6.1e-24  Score=195.53  Aligned_cols=138  Identities=20%  Similarity=0.259  Sum_probs=78.9

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCCh-HHHHH
Q 006802          259 RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT-ALHIA  337 (630)
Q Consensus       259 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~T-pLh~A  337 (630)
                      +..|.||||+|+..|+.+++++|++.+++++.. |..|+||||+|+ .|+.+++++|++.+.++ +.+|..|+| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            445666666666666666666666666555543 556666666664 56666666666665544 566666666 66666


Q ss_pred             HHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCch
Q 006802          338 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSA  400 (630)
Q Consensus       338 ~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~  400 (630)
                      +..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++....+..+.++
T Consensus        86 ~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           86 AREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             HHHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             HHCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            66666666666666 566666666666666666666666666666666666665555444443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=5.5e-23  Score=189.10  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=117.6

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCc-hh
Q 006802          222 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQT-AL  300 (630)
Q Consensus       222 ~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~L  300 (630)
                      ...+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+ .|+.+++++|++.+++++.. |..|.| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~-d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc-CCCCCcHHH
Confidence            346788999999999999999999999999987 778899999999985 99999999999999998765 899999 99


Q ss_pred             hhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHH
Q 006802          301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  371 (630)
Q Consensus       301 h~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A  371 (630)
                      |+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            9999999999999999998876 8999999999999999999999999999 8999999999999998744

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=8.5e-24  Score=200.64  Aligned_cols=162  Identities=15%  Similarity=0.106  Sum_probs=129.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCH----HHHHHHHhcCCchhhhhccCCCcHHHHH
Q 006802          194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI----DVVNFLLEIDSNLAKIARNNGKTVLHSA  269 (630)
Q Consensus       194 g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~----e~v~~LL~~~~~~~~~~d~~g~tpLh~A  269 (630)
                      ++++|+.|+..|+.+.++.+++.+.+..  .+..|.||||+|+..|+.    +++++|+++|+++ +..|.+|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            3467777777777777777777665422  235678888888888864    4888888888887 67788888888888


Q ss_pred             HHcCC------HHHHHHHHhCCCCCCcccCCCCC-chhhhhccCC-----CHHHHHHhhc-CCCCcccccCCCCChHHHH
Q 006802          270 ARMGH------LEVVKALVSKDPSTGFRTDKKGQ-TALHMAVKGQ-----NEDIVLELIR-PDPSVLKLEDNKGNTALHI  336 (630)
Q Consensus       270 a~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~Aa~~g-----~~~iv~~Ll~-~~~~~~n~~d~~G~TpLh~  336 (630)
                      +..|+      .+++++|++.|++++.. |..|. ||||+|+..+     +.+++++|++ .++++ +.+|..|+||||+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~  160 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEF  160 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHH
Confidence            88886      68899999999999876 89999 9999999854     3568999999 77776 9999999999999


Q ss_pred             HHHhCcHHHHHHHhcccCCCccccc
Q 006802          337 AIKKGRTQIVRCLLSIEGIDVNSLN  361 (630)
Q Consensus       337 A~~~g~~~iv~~Ll~~~g~~in~~n  361 (630)
                      |++.|+.++|++|.+ ...+.+.++
T Consensus       161 A~~~~~~~~v~~L~~-~~~~~~~~~  184 (186)
T 3t8k_A          161 VKRCQKPIALKMMED-YIKKYNLKE  184 (186)
T ss_dssp             HHTTTCHHHHHHHHH-HHHHHTCCC
T ss_pred             HHHcCCHHHHHHHHH-HHHHHhccc
Confidence            999999999999987 444444443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=8.8e-23  Score=183.16  Aligned_cols=133  Identities=23%  Similarity=0.258  Sum_probs=105.5

Q ss_pred             cCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccC
Q 006802          111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP  190 (630)
Q Consensus       111 ~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~  190 (630)
                      .+++..+..|.||||.|++.|+.+++++|++.+.+      ++.+|..|.||||+|+. |+.+++++|+++  +.+++..
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~   73 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCA   73 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCC
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCc
Confidence            46777888888888888888888888888887653      56777888888888888 888888888887  4556667


Q ss_pred             CCC-CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 006802          191 ARN-GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN  253 (630)
Q Consensus       191 ~~~-g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~  253 (630)
                      +.. |.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           74 DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            777 78888888888888888888887776 455677788888888888888888888877753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=1.8e-22  Score=177.65  Aligned_cols=126  Identities=42%  Similarity=0.667  Sum_probs=102.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHh
Q 006802          261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  340 (630)
Q Consensus       261 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~  340 (630)
                      +|.||||.|+..|+.+++++|++.++++... |..|.||||+|+..++.+++++|++.+.++ +.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence            4677777777777777777777777666544 677777777777777777777777776665 77788889999999999


Q ss_pred             CcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 006802          341 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  389 (630)
Q Consensus       341 g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~  389 (630)
                      |+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++||+
T Consensus        79 ~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999988 7888888888999999999999999999999988875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=1.6e-22  Score=181.36  Aligned_cols=126  Identities=29%  Similarity=0.401  Sum_probs=101.2

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHH
Q 006802          259 RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI  338 (630)
Q Consensus       259 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~  338 (630)
                      ...|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+..++.+++++|++.+.++ +.+|.+|+||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            345677777777777777777777777776654 777788888888888888888888777665 777888888999998


Q ss_pred             HhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       339 ~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      ..|+.+++++|++ .|++++..|..|.||||+|+..++.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            8888889998888 78888888888899999998888888888888876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.2e-21  Score=172.30  Aligned_cols=126  Identities=39%  Similarity=0.627  Sum_probs=101.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccC
Q 006802          227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  306 (630)
Q Consensus       227 ~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  306 (630)
                      +|.||||.|+..|+.+++++|++.|.++ +..+..|.||||.|+..|+.+++++|++.++++... |..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHc
Confidence            4678888888888888888888877775 556777888888888888888888888887777654 77888888888888


Q ss_pred             CCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCC
Q 006802          307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  356 (630)
Q Consensus       307 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  356 (630)
                      ++.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|+|
T Consensus        79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCC
T ss_pred             ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCC
Confidence            8888888888887765 7788888999999999999999998888 6764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.86  E-value=9.9e-22  Score=176.25  Aligned_cols=124  Identities=27%  Similarity=0.347  Sum_probs=99.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       225 d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                      ...+.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHH
Confidence            445678888888888888888888887776 566777888888888888888888888887777654 778888888888


Q ss_pred             cCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          305 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       305 ~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      ..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++
T Consensus        89 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            888888888888887765 7788888888888888888888888887

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=2.4e-22  Score=180.43  Aligned_cols=129  Identities=27%  Similarity=0.387  Sum_probs=96.9

Q ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHH
Q 006802          257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI  336 (630)
Q Consensus       257 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~  336 (630)
                      ..|.+|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence            35667777777777777777777777777766554 677777777777777777777777776665 7778888888888


Q ss_pred             HHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 006802          337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  388 (630)
Q Consensus       337 A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga  388 (630)
                      |+..|+.+++++|++ .|++++.+|..|.||||+|...+..+++++|.+.+.
T Consensus        83 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            888888888888887 788888888888888888887777777777665543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=3.9e-21  Score=181.68  Aligned_cols=137  Identities=26%  Similarity=0.287  Sum_probs=75.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhc-cCCCcHHHHHHH
Q 006802          193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-NNGKTVLHSAAR  271 (630)
Q Consensus       193 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d-~~g~tpLh~Aa~  271 (630)
                      .|.||||+|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+ .+|.||||+|+.
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHh
Confidence            45566666666666666666665 333 3445555666666666666666666666665554 2333 555666666666


Q ss_pred             cCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       272 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      .|+.+++++|++.++++... |..|+||||+|++.++.                  ..+.+||++|+..|+.+++++|.+
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVE-DERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            66666666666655555433 55555555555542211                  234455555555555555555544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=3.5e-21  Score=190.99  Aligned_cols=108  Identities=31%  Similarity=0.322  Sum_probs=56.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhc-cCCCcHHHHHHH
Q 006802          193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-NNGKTVLHSAAR  271 (630)
Q Consensus       193 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d-~~g~tpLh~Aa~  271 (630)
                      .|.||||+|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..+ ..|.||||+|+.
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHH
Confidence            45555555555555555555555 333 3344555555555555555555555555555554 2233 445555555555


Q ss_pred             cCCHHHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       272 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                      .|+.+++++|++.+++++.. |..|.||||+|+
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~  152 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVE-DERGLTALELAR  152 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHH
Confidence            55555555555555554432 555555555554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=1.3e-20  Score=169.02  Aligned_cols=127  Identities=24%  Similarity=0.330  Sum_probs=92.1

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHH
Q 006802          189 IPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS  268 (630)
Q Consensus       189 ~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~  268 (630)
                      ..+.+|.||||+|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence            4566677777777777777777777777665 3456677777777777777777777777777765 5667777888888


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcC
Q 006802          269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP  318 (630)
Q Consensus       269 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~  318 (630)
                      |+..|+.+++++|++.++++... |..|.||||+|+..+..+++++|.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCC-CTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhccHHHHHhhcccc
Confidence            88888888888888877777654 77788888888877777777665544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=2.7e-20  Score=163.66  Aligned_cols=119  Identities=24%  Similarity=0.285  Sum_probs=96.0

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHH
Q 006802          259 RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI  338 (630)
Q Consensus       259 d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~  338 (630)
                      +..|.||||.|+..|+.+++++|++.++++... |..|+||||+|+..++.+++++|++.+.++ +.+|.+|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence            356778888888888888888888888777654 778888888888888888888888887765 888889999999999


Q ss_pred             HhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 006802          339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  383 (630)
Q Consensus       339 ~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L  383 (630)
                      ..|+.+++++|++ .|++++.+|..|.||||+|.   ..++.++|
T Consensus        82 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~---~~~~~~ll  122 (123)
T 3aaa_C           82 YEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD---NQAIKALL  122 (123)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC---CHHHHHHH
T ss_pred             HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC---CHHHHHHh
Confidence            9999999999998 79999999999999999983   44444443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.83  E-value=5.8e-21  Score=180.52  Aligned_cols=139  Identities=21%  Similarity=0.216  Sum_probs=83.0

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHH
Q 006802          157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA  236 (630)
Q Consensus       157 ~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  236 (630)
                      ..|.||||+|+..|+.+++++|++   +.+++..+..|.||||+|+..|+.+++++|++.++++....+..|.||||+|+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            345566666666666666666665   23445556666666666666666666666666665543332356666666666


Q ss_pred             HcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhh
Q 006802          237 AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI  316 (630)
Q Consensus       237 ~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll  316 (630)
                      ..|+.+++++|+++|+++ +..|.+|.||||+|+..++                  ...+.++|++|++.|+.++++.|.
T Consensus       119 ~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          119 GYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHHHH
Confidence            666666666666666655 4556666666666665322                  123456666666666666666665


Q ss_pred             c
Q 006802          317 R  317 (630)
Q Consensus       317 ~  317 (630)
                      +
T Consensus       180 ~  180 (183)
T 3deo_A          180 G  180 (183)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=5.9e-21  Score=186.23  Aligned_cols=137  Identities=27%  Similarity=0.312  Sum_probs=113.1

Q ss_pred             hhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHH
Q 006802          256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH  335 (630)
Q Consensus       256 ~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh  335 (630)
                      ...+.+|.||||+|+..|+.++++.|++.+++++.. |..|+||||+|+..|+.+++++|++.....++.+|..|+||||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            345678899999999999999999999999887765 8899999999999999999999999834445999999999999


Q ss_pred             HHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 006802          336 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH  394 (630)
Q Consensus       336 ~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~  394 (630)
                      +|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.++++.|++.|+.....+
T Consensus       146 ~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            9999999999999999 799999999999999999999999999999999998775443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=1.2e-20  Score=187.01  Aligned_cols=110  Identities=30%  Similarity=0.399  Sum_probs=53.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccC
Q 006802          227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  306 (630)
Q Consensus       227 ~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  306 (630)
                      .|.||||+|+..|+.++++.|++ +.++ +..|..|.||||+|+..|+.+++++|++.+++++...+..|.||||+|+..
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            34455555555555555555554 4433 334444555555555555555555555554444443224455555555555


Q ss_pred             CCHHHHHHhhcCCCCcccccCCCCChHHHHHHH
Q 006802          307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  339 (630)
Q Consensus       307 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~  339 (630)
                      |+.+++++|++.++++ +.+|..|+||||+|+.
T Consensus       122 g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          122 VRPEVVEALVELGADI-EVEDERGLTALELARE  153 (244)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHH
Confidence            5555555555544443 4445555555555543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=2.9e-20  Score=188.00  Aligned_cols=127  Identities=24%  Similarity=0.297  Sum_probs=107.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCcc-----cCCCCCchhhhhccC---CCHHHHHHhhcCCCCcccccCCCCChHH
Q 006802          263 KTVLHSAARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKGNTAL  334 (630)
Q Consensus       263 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~n~~d~~G~TpL  334 (630)
                      .++|+.|+..|+.+.+..+++.+++....     .|..|+||||+|+..   ++.+++++|++.++++ |.+|.+|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence            45777777777777777777777764332     267788888888888   7888898888888776 88899999999


Q ss_pred             HHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Q 006802          335 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  391 (630)
Q Consensus       335 h~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~  391 (630)
                      |+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       210 h~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999998 899999999999999999999999999999999998653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=2.8e-20  Score=190.28  Aligned_cols=121  Identities=21%  Similarity=0.247  Sum_probs=59.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccc-----CCCCCChHHHHHHHc---CCHHHHHHHHhcCCchhhhhccCCCcHH
Q 006802          195 YDSFHVAAKQGHLEVLKELLGEFPNLVMT-----TDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAKIARNNGKTVL  266 (630)
Q Consensus       195 ~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~-----~d~~g~tpL~~Aa~~---g~~e~v~~LL~~~~~~~~~~d~~g~tpL  266 (630)
                      .++|+.|+..|+.+.++.|++.++++...     .+..|.||||+|+..   |+.+++++|+++|+++ +..|.+|.|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHH
Confidence            34555555555555555555555553221     344555555555554   4555555555555443 33444455555


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhc
Q 006802          267 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR  317 (630)
Q Consensus       267 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~  317 (630)
                      |+|+..|+.+++++|++.++++... |..|.||||+|+..++.+++++|++
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~~~iv~~Ll~  280 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTV-NEAGETALDIARKKHHKECEELLEQ  280 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCC-CTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            5555555555555555544444332 4444444444444444444444444

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.81  E-value=3.3e-20  Score=189.73  Aligned_cols=146  Identities=18%  Similarity=0.112  Sum_probs=107.6

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccc----cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccCCCC
Q 006802          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETAS----IPARNGYDSFHVAAKQ---GHLEVLKELLGEFPNLVMTTDLS  227 (630)
Q Consensus       155 ~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~----~~~~~g~t~Lh~A~~~---g~~eiv~~Ll~~~~~~~~~~d~~  227 (630)
                      ....+.++|+.|+..|+.+.|+.|++.+......    ..+..|.||||+|+..   |+.+++++|++.+++ ++..|..
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~  225 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAAD  225 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTT
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCC
Confidence            3445667888888888888888888775443221    1467788888888886   788888888888877 4567788


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCC
Q 006802          228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  307 (630)
Q Consensus       228 g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g  307 (630)
                      |.||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.+++++|++.+++       .|.||||+|+..|
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWV  297 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence            888888888888888888888888886 67788888888888888888888888887765       4678888888877


Q ss_pred             CH
Q 006802          308 NE  309 (630)
Q Consensus       308 ~~  309 (630)
                      +.
T Consensus       298 ~~  299 (301)
T 2b0o_E          298 IS  299 (301)
T ss_dssp             --
T ss_pred             Cc
Confidence            53

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=1e-20  Score=184.45  Aligned_cols=136  Identities=22%  Similarity=0.235  Sum_probs=80.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCCCCchhhhh
Q 006802          225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK-DPSTGFRTDKKGQTALHMA  303 (630)
Q Consensus       225 d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A  303 (630)
                      +..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++. +.+++.. |..|+||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~-d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ-NKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCC-CTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcccc-CCCCCCHHHHH
Confidence            445566666666666666666666666664 45566666777777766667777777666 5555443 66677777777


Q ss_pred             ccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCC
Q 006802          304 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG  364 (630)
Q Consensus       304 a~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G  364 (630)
                      +..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.++++.|++ .+++.+..|..|
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~  206 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED  206 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence            7777777777777666654 6667777777777777777777777776 566655555443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.81  E-value=3.2e-20  Score=163.17  Aligned_cols=108  Identities=24%  Similarity=0.289  Sum_probs=53.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccC
Q 006802          227 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  306 (630)
Q Consensus       227 ~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  306 (630)
                      .|.||||+|+..|+.+++++|++.|.++ +..|..|.||||+|+..|+.+++++|++.+++++.. |..|+||||+|+..
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYE   83 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHHHHc
Confidence            3444555555555555555555544443 334444555555555555555555555554444432 44555555555555


Q ss_pred             CCHHHHHHhhcCCCCcccccCCCCChHHHHH
Q 006802          307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIA  337 (630)
Q Consensus       307 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A  337 (630)
                      ++.+++++|++.++++ +.+|.+|+||||+|
T Consensus        84 ~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADK-TVKGPDGLTAFEAT  113 (123)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred             CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence            5555555555554443 44555555555555

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=3e-19  Score=180.52  Aligned_cols=123  Identities=24%  Similarity=0.237  Sum_probs=82.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCchh-----hhhccCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcccCCCCCchhh
Q 006802          230 TALHTAAAQGHIDVVNFLLEIDSNLA-----KIARNNGKTVLHSAARM---GHLEVVKALVSKDPSTGFRTDKKGQTALH  301 (630)
Q Consensus       230 tpL~~Aa~~g~~e~v~~LL~~~~~~~-----~~~d~~g~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  301 (630)
                      ++|+.|+..|+.+.++.+++.|.+..     +..+..|.||||+|+..   |+.+++++|++.+++++.. |..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~-d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC-CTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc-CCCCCCHHH
Confidence            45666666666666666666655532     22255677777777776   6677777777777666554 667777777


Q ss_pred             hhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCC
Q 006802          302 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI  355 (630)
Q Consensus       302 ~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  355 (630)
                      +|+..|+.+++++|++.++++ +.+|.+|.||||+|+..|+.+++++|++ .|+
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga  262 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQ-ALS  262 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHH-cCC
Confidence            777777777777777766655 6777777777777777777777777777 444

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=6.5e-19  Score=146.66  Aligned_cols=93  Identities=38%  Similarity=0.641  Sum_probs=75.9

Q ss_pred             CCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHc
Q 006802          295 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  374 (630)
Q Consensus       295 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~  374 (630)
                      +|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHc
Confidence            3677888888777788888887777665 7778888888888888888888888888 7888888888888888888888


Q ss_pred             CCHHHHHHHHHcCCC
Q 006802          375 GNTELFSLLKEAGAA  389 (630)
Q Consensus       375 ~~~~iv~~L~~~ga~  389 (630)
                      ++.+++++|+++||+
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            888888888888874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=1e-18  Score=183.04  Aligned_cols=123  Identities=21%  Similarity=0.300  Sum_probs=60.6

Q ss_pred             CCcHHHHHHHc-CCHHHHHHHHhCCCCCCcccC--CCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHH
Q 006802          262 GKTVLHSAARM-GHLEVVKALVSKDPSTGFRTD--KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI  338 (630)
Q Consensus       262 g~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~  338 (630)
                      +.|+||.|+.. |+.++++.|++.+++++.. +  ..|.||||+|+..|+.+++++|++.++++ |.+|..|+||||+|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~  276 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT  276 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            34444444444 4444444444444444432 2  44445555555555555555555444433 444555555555555


Q ss_pred             HhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       339 ~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      ..|+.+++++|++ .|++++..|..|.||||+|+..++.+++++|+++|
T Consensus       277 ~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          277 ILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5555555555554 45555555555555555555555555555555444

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.75  E-value=2.4e-18  Score=180.25  Aligned_cols=147  Identities=17%  Similarity=0.219  Sum_probs=116.1

Q ss_pred             CCCCChHHHHHHHc-CCHHHHHHHHhcCCchhhhhc--cCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhh
Q 006802          225 DLSCSTALHTAAAQ-GHIDVVNFLLEIDSNLAKIAR--NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH  301 (630)
Q Consensus       225 d~~g~tpL~~Aa~~-g~~e~v~~LL~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  301 (630)
                      +..+.|+||.|+.. |+.++++.|++.|+++ +..+  ..|.||||+|+..|+.+++++|++.+++++.. |..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHH
Confidence            44567899999999 9999999999999997 5566  78999999999999999999999999998865 999999999


Q ss_pred             hhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhccc--CCCcccccCCCCCHHHHHHHc
Q 006802          302 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE--GIDVNSLNKAGESPLDVAEKL  374 (630)
Q Consensus       302 ~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~--g~~in~~n~~G~TpL~~A~~~  374 (630)
                      +|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+...  +.+....+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            999999999999999999877 899999999999999999999999999732  233445567788888877654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=2.4e-18  Score=149.16  Aligned_cols=109  Identities=37%  Similarity=0.506  Sum_probs=87.1

Q ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHH
Q 006802          257 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI  336 (630)
Q Consensus       257 ~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~  336 (630)
                      ..|.+|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..++.+++++|++.++++ +.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence            35677888888888888888888888888776654 778888888888888888888888887765 7788888888888


Q ss_pred             HHHhCcHHHHHHHhcccCCCcccccCCCCCHH
Q 006802          337 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL  368 (630)
Q Consensus       337 A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL  368 (630)
                      |+..|+.+++++|++ .|+++|.++..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence            888888888888888 7888888888887763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.74  E-value=5.7e-18  Score=140.90  Aligned_cols=93  Identities=40%  Similarity=0.638  Sum_probs=69.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHh
Q 006802          261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  340 (630)
Q Consensus       261 ~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~  340 (630)
                      +|+||||+|+..|+.+++++|++.+++++.. |..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            3677777777777777777777777776654 777777777777777777777777777665 77788888888888888


Q ss_pred             CcHHHHHHHhcccCCC
Q 006802          341 GRTQIVRCLLSIEGID  356 (630)
Q Consensus       341 g~~~iv~~Ll~~~g~~  356 (630)
                      |+.+++++|++ .|++
T Consensus        79 ~~~~~~~~Ll~-~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLE-AGAY   93 (93)
T ss_dssp             TCHHHHHHHHH-TTCC
T ss_pred             CCHHHHHHHHH-cCCC
Confidence            88888888887 5653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=7.1e-18  Score=146.13  Aligned_cols=107  Identities=35%  Similarity=0.517  Sum_probs=99.2

Q ss_pred             cCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHH
Q 006802          292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  371 (630)
Q Consensus       292 ~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A  371 (630)
                      +|..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-KGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTT-TTCCTTCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHH
Confidence            5889999999999999999999999998875 8899999999999999999999999999 8999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCch
Q 006802          372 EKLGNTELFSLLKEAGAAHSKDHGKPPSA  400 (630)
Q Consensus       372 ~~~~~~~iv~~L~~~ga~~~~~~~~~~~~  400 (630)
                      +..++.+++++|+++|++.+.....+.++
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            99999999999999999988776665544

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.62  E-value=6e-16  Score=132.99  Aligned_cols=90  Identities=29%  Similarity=0.457  Sum_probs=66.8

Q ss_pred             cCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHH
Q 006802          292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  371 (630)
Q Consensus       292 ~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A  371 (630)
                      .|.+|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccccCCCcHHHHH
Confidence            4666777777777777777777777766554 6677777888888888888888888877 6777777777888888888


Q ss_pred             HHcCCHHHHHHH
Q 006802          372 EKLGNTELFSLL  383 (630)
Q Consensus       372 ~~~~~~~iv~~L  383 (630)
                      +..++.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            888887777766

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.58  E-value=3.3e-15  Score=128.34  Aligned_cols=90  Identities=28%  Similarity=0.430  Sum_probs=63.0

Q ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHH
Q 006802          258 ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  337 (630)
Q Consensus       258 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A  337 (630)
                      .|.+|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence            4556677777777777777777777776666544 667777777777777777777777776654 66777777777777


Q ss_pred             HHhCcHHHHHHH
Q 006802          338 IKKGRTQIVRCL  349 (630)
Q Consensus       338 ~~~g~~~iv~~L  349 (630)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            777777777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	630
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-36
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-35
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-34
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-31
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-21
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-26
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-25
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-25
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-25
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-23
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-23
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-21
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-19
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-16
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-10
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	9e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	5e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	3e-04

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 7e-36
 Identities = 73/279 (26%), Positives = 125/279 (44%), Gaps = 24/279 (8%)

Query: 124 LHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           L  A +  ++  V ++L+   + N       ++ + G TPL+ A +     IVE +L+H 
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVN------FQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 183 NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID 242
                 +  +NG   F +AA  G +++LK         V   D    TA   AA  G + 
Sbjct: 63  A--DPVLRKKNGATPFLLAAIAGSVKLLKLF-LSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 243 VVNFLLEIDSNL---------AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTD 293
            + FL +  +N+          +  R  G T L  AA  GH+EV+K L+ +  +     D
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 294 KKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
             G+ AL  A+   +    E I   L+     V  +   +G T L +A++K    +V+ L
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           L  E I++N  +  G++ L +A +L   ++  LL + GA
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 1e-18
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 11/183 (6%)

Query: 191 ARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI 250
           A         A +   ++++++LL    N+    +    T LH A      D+V  LL  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 251 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 310
            ++   + + NG T    AA  G ++++K  +SK        D  G TA   A       
Sbjct: 62  GAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVK 119

Query: 311 IVLELIRPDPS---------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 361
            +  L +   +           +     G TAL  A +KG  ++++ LL   G DVN+ +
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 362 KAG 364
             G
Sbjct: 180 NMG 182

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 6e-14
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 7/141 (4%)

Query: 111 KNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESG 170
           ++++   K G   L  AA  G++  +  +L    A+     ++  +  G   L  A  S 
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-----VNACDNMGRNALIHALLSS 193

Query: 171 HALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSC 228
               VE +   +    A +  R   G     +A ++ HL +++ LL +    +  TD   
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253

Query: 229 STALHTAAAQGHIDVVNFLLE 249
            TAL  A       +   L +
Sbjct: 254 KTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 42/173 (24%)

Query: 258 ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
           A      +L  A +   +++V+ L+    +  F+ ++ G T LH AV+   EDIV  L+R
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 318 PDPS--------------------------------VLKLEDNKGNTALHIAIKKGRTQI 345
                                                +   D  G TA   A   G+ + 
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 346 VRCLLS---------IEGIDVNSLNKAGESPLDVAEKLGNTELFS-LLKEAGA 388
           ++ L               D   L K G + L  A + G+ E+   LL E GA
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 8e-35
 Identities = 86/307 (28%), Positives = 143/307 (46%), Gaps = 18/307 (5%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAA 167
           E++ ++    K+G   LH+AA+ G + RV E+L   DA+      +   + G TPL+VA 
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKV-RVAELLLERDAH-----PNAAGKNGLTPLHVAV 173

Query: 168 ESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLS 227
              +  IV+ +L      +   PA NGY   H+AAKQ  +EV + LL ++        + 
Sbjct: 174 HHNNLDIVKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQ 230

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 287
             T LH AA +GH ++V  LL   +N   +   +G T LH  A+ GH+ V   L+     
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 289

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
               T + G T LH+A    N  +V + +    + +  +   G + LH A ++G T IV 
Sbjct: 290 V-DATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 347

Query: 348 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQT 407
            LL   G   N ++  G +PL +A++LG   +  +LK        D       + + + +
Sbjct: 348 LLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV-----TDETSFVLVSDKHRMS 401

Query: 408 VSDIKHD 414
             +   +
Sbjct: 402 FPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 7e-34
 Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 50/300 (16%)

Query: 124 LHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHM 182
           LH+A+  G+L  V  +LQ     N         N + ETPL++AA +GH  + + +LQ+ 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNV-------SNVKVETPLHMAARAGHTEVAKYLLQN- 55

Query: 183 NLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFPNL-------------------- 220
               A + A+        H AA+ GH  ++K LL    N                     
Sbjct: 56  ---KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

Query: 221 ------------VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 268
                                T LH AA  G + V   LLE D++    A  NG T LH 
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHV 171

Query: 269 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 328
           A    +L++VK L+ +  S        G T LH+A K    ++   L++   S    E  
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESV 229

Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           +G T LH+A ++G  ++V   L  +  + N  NK+G +PL +  + G+  +  +L + G 
Sbjct: 230 QGVTPLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 6e-27
 Identities = 66/225 (29%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLGEFP 218
           TPL+VA+  GH  IV+ +LQ      AS    N       H+AA+ GH EV K LL    
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
             V        T LH AA  GH ++V  LLE ++N                A        
Sbjct: 58  K-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP--NLATTAGHTPLHIAAREGHVET 114

Query: 279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 338
              + +  ++     KKG T LH+A K     +   L+  D          G T LH+A+
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAV 173

Query: 339 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
                 IV+ LL   G   +S    G +PL +A K    E+   L
Sbjct: 174 HHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 4e-15
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 298 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV 357
           T LH+A    +  IV  L++   S   + + K  T LH+A + G T++ + LL      V
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKV 59

Query: 358 NSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
           N+  K  ++PL  A ++G+T +  LL E  A
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  122 bits (306), Expect = 4e-31
 Identities = 48/279 (17%), Positives = 85/279 (30%), Gaps = 41/279 (14%)

Query: 108 ERKKNKDSPGKRGDLQLHLAARAGNLSRV--MEILQSCDANEAKDLLSKKNQEGETPLYV 165
           +   +    G + ++   +AA  G  S +  + +L + D       +     E      +
Sbjct: 78  QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-----VKVIQAENYQAFRL 132

Query: 166 AAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMT 223
           AAE+GH  ++  + +    E  ++     Y +F +AA+ GHL VL  L          M 
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 224 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN---------------------NG 262
              +       A  +GH +V+NFLL+    LA    +                       
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 263 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV 322
                 +   G  ++V                     L         D +  L+      
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECL-------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 305

Query: 323 LKLEDN----KGNTALHIAIKKGRTQIVRCLLSIEGIDV 357
                       N  L +A++ G       LLSI  +  
Sbjct: 306 ALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 93.4 bits (231), Expect = 2e-21
 Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 31/294 (10%)

Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
             D QL L       +     + + + +     L   + +    +++        + + +
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANELS-----LMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 179 LQHMNLETASIP---------ARNGYDSFHVAAKQGHLEVLK--ELLGEFPNLVMTTDLS 227
             +      +                    VAA  G    L    LL     +V      
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSK-- 284
              A   AA  GH+ V+N L E+       + +         AA  GHL V+  L     
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 285 DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 344
             +T     +        AV   + +++  L+     +          A     + G   
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML--------AYAEIHEFEYGEKY 237

Query: 345 IVRCLLSIEGIDVN----SLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 394
           +   +                   +   D+  K    + F +L+     + +  
Sbjct: 238 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL 291

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 20/204 (9%), Positives = 49/204 (24%), Gaps = 15/204 (7%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
             L         ++    +  +              +         +V + L        
Sbjct: 14  PQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYN 73

Query: 290 FRT----------DKKGQTALHMAVKGQNEDIV--LELIRPDPSVLKLEDNKGNTALHIA 337
                          K +    +A        +  L L+     ++K+   +   A  +A
Sbjct: 74  RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 133

Query: 338 IKKGRTQIVRCLLSIEGIDVNSLNKA--GESPLDVAEKLGNTELFSLLKEAGAAHSKDHG 395
            + G   ++  L                      +A + G+  + + L E     +    
Sbjct: 134 AENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 396 KPPSATKQLKQTVSDIKHDVQSQL 419
           +  +        V    H+V + L
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFL 216

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (264), Expect = 2e-26
 Identities = 57/256 (22%), Positives = 96/256 (37%), Gaps = 15/256 (5%)

Query: 151 LLSKKNQEGETPLYVAAESGHALIVEEMLQHM-NLETASIPARNGYDSFHVAAKQGHLEV 209
           +     ++G+T L++A    H   ++ +L      E   +    G  + H+AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 210 LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE---------IDSNLAKIARN 260
           +++L       V+  +    TALH A           LL+          D+ L +    
Sbjct: 61  VEKL-YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 261 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK---GQTALHMAVKGQNEDIVLELIR 317
              T    AA             +D     + + +   G T LH+AV  ++ ++V  L  
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
               + K E   G T LH+A++     ++  LL   G D  +    G +PL  A    N 
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNP 238

Query: 378 ELFSLLKEAGAAHSKD 393
            L  LL+  GA   +D
Sbjct: 239 ILARLLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 46/249 (18%), Positives = 79/249 (31%), Gaps = 30/249 (12%)

Query: 103 FIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETP 162
            +G     +  D     G   LHLAA  G  S V ++  +              + G T 
Sbjct: 28  LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL------VAERGGHTA 81

Query: 163 LYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVM 222
           L++A           +LQ           R+  D++   ++                   
Sbjct: 82  LHLACRVRAHTCACVLLQP-----RPSHPRDASDTYLTQSQDC----------------- 119

Query: 223 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 282
           T D S + A   +      +      +    L +    +G T LH A      E+V+ L 
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 283 SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 342
                        G+T LH+AV+ Q   ++  L++            G T L  A+ +  
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPN 237

Query: 343 TQIVRCLLS 351
             + R L +
Sbjct: 238 PILARLLRA 246

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 49/281 (17%), Positives = 94/281 (33%), Gaps = 26/281 (9%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           + L   A     + E +     N          +   T L+  A +  A   E+++ H  
Sbjct: 4   IKLHTEAAGSYAITEPITRESVNI------IDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 184 LETASIPA------RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
            E  +  A       +      +A       ++  L+    +  +      S   H AAA
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAA 116

Query: 238 QGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR---- 291
                ++ ++L         +    NG T L   A     + V +               
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 292 ------TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
                    KG+TALH A +  N  IV  L+    S    +D  G T + +A ++GR ++
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 386
           V  L+  +G  V +++    +   +A+   +  +  +    
Sbjct: 237 VMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.4 bits (168), Expect = 1e-13
 Identities = 42/248 (16%), Positives = 91/248 (36%), Gaps = 22/248 (8%)

Query: 160 ETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPN 219
           E+P+ +  E+  +  + E +   ++       R+     H  A     E  ++L+     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 220 L-------VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 272
                   V   D   +T L  A       +V +L++  ++     ++    + H AA  
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAAN 117

Query: 273 GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI------------VLELIRPDP 320
               ++  +++     G   +        + +   NE                ++     
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 321 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 380
           +    E  KG TALH A +     IV+ L+  +G + +  ++ G++P+ +A + G  E+ 
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 381 SLLKEAGA 388
             L + GA
Sbjct: 238 MYLIQQGA 245

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 3e-25
 Identities = 56/234 (23%), Positives = 100/234 (42%), Gaps = 14/234 (5%)

Query: 121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQ 180
           +L +   A +G L  + E + +      K L ++ +Q+  T L+ A  +GH  IVE +LQ
Sbjct: 4   NLMVCNLAYSGKLEELKESILA-----DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 58

Query: 181 HMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH 240
                     A                + + + L      V   + +  T LH AA++  
Sbjct: 59  LGVPVNDKDDAGWSPLHIA---ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 115

Query: 241 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL 300
            ++   LLE  +N      +   T +H AA  G+L+++  L+    ST    D +G T L
Sbjct: 116 HEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPL 173

Query: 301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 354
           H+A   +  +    L+    S+  +E+ +  T L +A K G   I++ ++  EG
Sbjct: 174 HLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA-KGGLGLILKRMV--EG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 5e-25
 Identities = 54/220 (24%), Positives = 83/220 (37%), Gaps = 36/220 (16%)

Query: 198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV-------------- 243
               A  G LE LKE +    +L   TD    TALH A + GH ++              
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 244 ------------------VNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 285
                             +   L            NG T LH AA     E+   L+   
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 345
            +   + D    TA+H A    N  ++  L+    S   ++D +GNT LH+A  + R + 
Sbjct: 127 ANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEE 184

Query: 346 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
            + L+S +G  +   NK  ++PL VA+  G   +   + E
Sbjct: 185 AKLLVS-QGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 288
           +  +   A  G ++ +   +  D +LA     + +T LH A   GH E+V+ L+      
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
             + D      LH+A     ++IV  L+     V    +  G T LH A  K R +I   
Sbjct: 64  NDKDDAGWSP-LHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 349 LLSIEGIDVNSLNKAGESPL 368
           LL   G + ++ +    + +
Sbjct: 122 LLE-GGANPDAKDHYEATAM 140

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.8 bits (242), Expect = 5e-23
 Identities = 47/268 (17%), Positives = 91/268 (33%), Gaps = 30/268 (11%)

Query: 107 GERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVA 166
                N++S G   + Q    +    L  V +   +       +L    ++ G TPL+  
Sbjct: 59  NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL----NLNIPVDEHGNTPLHWL 114

Query: 167 AESGHALIVEEMLQH-MNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTD 225
               +  +V+ +++H  N         +       +         + LL      ++  D
Sbjct: 115 TSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED 174

Query: 226 LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 285
               T LH       +                      T   +AA+     ++  +V K 
Sbjct: 175 SMNRTILHHIIITSGM----------------------TGCSAAAKYYLDILMGWIVKKQ 212

Query: 286 PSTGFRTDKKGQTALHMAVKGQNEDIV--LELIRPDPSVLKLEDNKGNTALHIAIKKGRT 343
                    + ++  +     + + I+  L+L     ++L  +D+ G+T L+IA + G  
Sbjct: 213 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 272

Query: 344 QIVRCLLSIEGIDVNSLNKAGESPLDVA 371
            IV  LL   G D    NK+G  P+D  
Sbjct: 273 SIVDALLD-YGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.8 bits (203), Expect = 5e-18
 Identities = 41/253 (16%), Positives = 92/253 (36%), Gaps = 19/253 (7%)

Query: 153 SKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKE 212
           +++  + E  L          +   +    +   +   + +     HV+      EV   
Sbjct: 33  NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGS-SNQQQQHVSFDSLLQEVNDA 91

Query: 213 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM 272
                 NL +  D   +T LH   +  ++++V  L++  SN      N G++ L  A + 
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKS 150

Query: 273 ---GHLEVVKALVSKDPSTGFRTDKKGQTALHMAV------------KGQNEDIVLELIR 317
                    +AL+          D   +T LH  +            K   + ++  +++
Sbjct: 151 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 210

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI--DVNSLNKAGESPLDVAEKLG 375
                ++   N+  +  +    + +  I+  L     I   +N+ +  G++ L++A +LG
Sbjct: 211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 270

Query: 376 NTELFSLLKEAGA 388
           N  +   L + GA
Sbjct: 271 NISIVDALLDYGA 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.2 bits (191), Expect = 2e-16
 Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 27/205 (13%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
           + G+  LH      NL  +++ L    +N         +  GE+ L  A +S +      
Sbjct: 105 EHGNTPLHWLTSIANL-ELVKHLVKHGSN-----RLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 178 MLQHMNLETASIPARN--------------GYDSFHVAAKQGHLEVLKELLGEFPNLVMT 223
               ++     +   +              G      AAK     ++  ++ +    + +
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 218

Query: 224 TDLSCSTALHTAAAQGHIDVVNFLL--EIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
                 +  +    +    ++  L    I +N+     +NG T L+ AAR+G++ +V AL
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 282 VSK--DPSTGFRTDKKGQTALHMAV 304
           +    DP      +K G   +    
Sbjct: 279 LDYGADPF---IANKSGLRPVDFGA 300

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 95.3 bits (235), Expect = 9e-23
 Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 10/234 (4%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LH A       +V E+L S  +      L +K+Q+G  PL+ +       I   +L  M 
Sbjct: 4   LHQACMENEFFKVQELLHSKPSL-----LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
                    +   +    A       + + L + P       ++         A G    
Sbjct: 59  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

Query: 244 -VNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM 302
            V+  L  +    +I     +  LH AA +G L++++ L     S     DK+G T L  
Sbjct: 119 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 303 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 356
           A+   + D  + L+    +   L DNKG  A  +A+ +   Q+ +  L+   +D
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN-NVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (170), Expect = 4e-14
 Identities = 36/227 (15%), Positives = 67/227 (29%), Gaps = 41/227 (18%)

Query: 199 HVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE---IDSNLA 255
           H A  +     ++ELL   P+L++  D      LH + +    ++ +FLL      +   
Sbjct: 5   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 64

Query: 256 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 315
               +       + +      V             +   +G T LH+AV  +  ++   L
Sbjct: 65  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 124

Query: 316 IRPDPSVLKLEDNKGNTALHI----------------------------------AIKKG 341
           I    SV   +D      LH                                   A+ +G
Sbjct: 125 IENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 342 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 388
                  L+   G + + ++  G    DVA    N ++         
Sbjct: 184 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 14/64 (21%), Positives = 23/64 (35%)

Query: 331 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 390
           N  LH A  +     V+ LL  +   +   ++ G  PL  +      E+ S L       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 391 SKDH 394
           + D 
Sbjct: 61  NLDD 64

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 90.9 bits (224), Expect = 9e-21
 Identities = 54/293 (18%), Positives = 101/293 (34%), Gaps = 30/293 (10%)

Query: 108 ERKKNKDSPGKR---------GDLQLHLAARAGNLSRVMEILQS-CDANEAKDLLSKKNQ 157
             + + + P  +                A  +G+   V+ +L+   D N         N 
Sbjct: 19  GSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-------YANV 71

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF 217
           +G T L+ A    +  +V+ ++++                            + E L   
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA---ASCGYLDIAEYLISQ 128

Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 277
              V   +    T L  A  +   +++   +       + AR   + ++   AR      
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188

Query: 278 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 337
               V           K G TALH+A      +++  LI+    V  ++D  G T LH A
Sbjct: 189 HINDVRHA--------KSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAA 239

Query: 338 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 390
              G+ +  R L+     D+ ++NK G++  DVA++     L  L K+    H
Sbjct: 240 AHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 201 AAKQGHLEVLKELLG-----EFPNLVM---TTDLSCSTALHTAAAQGHIDVVNFLLEIDS 252
            AKQ   E LK  +G     E P +                 A + G  + V  LLE  +
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 253 NLAKIARNNGKTVLHSAARMGHLEV 277
           ++   A  +G T LH A    ++++
Sbjct: 65  DI-NYANVDGLTALHQACIDDNVDM 88

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (206), Expect = 6e-19
 Identities = 52/231 (22%), Positives = 89/231 (38%), Gaps = 9/231 (3%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           GD  LH+A   GNL  V  ++        +  L   N   +TPL++A  +         L
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVITTL--PSVVRL 58

Query: 180 QHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLG---EFPNLVMTTDLSCSTALHTAA 236
                 +     R+G  + H+A +      L+ LL         +   +    TALH A 
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 237 AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG 296
                + V  LLE  +++  +   +G++ L  A     L +V+ L+    +        G
Sbjct: 119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSG 177

Query: 297 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
            +ALH A       +V  L+R       L++   +T L +A  +    I+R
Sbjct: 178 SSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 8e-19
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 8/227 (3%)

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLG 215
           +G+TPL++A   G+   V  ++         +   N       H+A       V++ L+ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 216 EFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE---IDSNLAKIARNNGKTVLHSAARM 272
              + +        TA H A        +  LL+     +   +    +G T LH A   
Sbjct: 62  AGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 273 GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT 332
              E V+ L+ +         K G++ L  AV+  +  +V +L+    + +  +   G++
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV-QLLLQHGANVNAQMYSGSS 179

Query: 333 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 379
           ALH A  +G   +VR L+   G D +  N   ++PL VA      ++
Sbjct: 180 ALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (191), Expect = 4e-17
 Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 8/221 (3%)

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARN--GYDSFHVAAKQGHLEVLKELLG 215
           +G++ L++A       +  E+++ +  + A +  +N       H+A      E+ + LLG
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 216 EFPNLVMTTDLSCSTALHTAA----AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 271
              +  +      +           A   +   +       ++ K    NG T LH A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 272 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN 331
            G+L +V+ LVS       +    G+TALH+AV  QN D+V  L++    V      +G 
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGY 179

Query: 332 TALHIAIKKGRTQIVRCLLSIEGIDVNSL-NKAGESPLDVA 371
           +   +   +  T+I + L  +   ++  L     E   D  
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (187), Expect = 1e-16
 Identities = 39/213 (18%), Positives = 80/213 (37%), Gaps = 6/213 (2%)

Query: 120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEML 179
           GD  LHLA      +  ME+++    + A   L+ +N   +TPL++A  +    I E +L
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEIAEALL 59

Query: 180 QHMNLETASIPARNGYDSFHVAA---KQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA 236
                        N                +           +++  T+ +  T LH A+
Sbjct: 60  GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 119

Query: 237 AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG 296
             G++ +V  L+ + +++      NG+T LH A  + + ++V  L+            +G
Sbjct: 120 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQG 178

Query: 297 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK 329
            +   +     +  I  +L +     L++    
Sbjct: 179 YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 1e-13
 Identities = 40/207 (19%), Positives = 67/207 (32%), Gaps = 8/207 (3%)

Query: 193 NGYDSFHVAAKQGHLEVLKEL---LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE 249
           +G    H+A       +  E+   +      +   +    T LH A      ++   LL 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 250 IDSNLAKIARNNGKTVLHSAAR----MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK 305
              +           +  +  +       +           S    T+  G T LH+A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 306 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE 365
                IV  L+     V   E   G TALH+A+      +V  LL   G DVN +   G 
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGY 179

Query: 366 SPLDVAEKLGNTELFSLLKEAGAAHSK 392
           SP  +     +T +   L +    + +
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTLENLQ 206

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           LHLA    N   V  +L+ C A+      ++   +G +P  +        I +++ Q   
Sbjct: 149 LHLAVDLQNPDLVSLLLK-CGADV-----NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 202

Query: 184 LETASIPARNGYDSF 198
                +P     +S+
Sbjct: 203 ENLQMLPESEDEESY 217

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.4 bits (181), Expect = 7e-16
 Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 9/216 (4%)

Query: 134 SRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARN 193
           ++V+  L +  A    +L +  ++ GET L++AA    A   + +L       +      
Sbjct: 2   AQVISDLLAQGA----ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR 57

Query: 194 GYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 253
                 VAA    +  +          +       +T L  AA      +V  L+  D++
Sbjct: 58  TPLHAAVAADAMGVFQILL--RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 115

Query: 254 LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 313
           +   A N+GKT LH AA + + E V  L+    +   + D K +T L +A +  + +   
Sbjct: 116 I-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASK 173

Query: 314 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
            L+    +  ++ D+       +A ++    IVR L
Sbjct: 174 ALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.0 bits (167), Expect = 6e-14
 Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 11/213 (5%)

Query: 174 IVEEMLQHMNLETASIPAR---NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCST 230
           ++ ++L       A + A     G  S H+AA+    +  K  L +      + D +  T
Sbjct: 4   VISDLLAQ----GAELNATMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGRT 58

Query: 231 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF 290
            LH A A   + V   LL   +       ++G T L  AAR+    +V+ L++ D     
Sbjct: 59  PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 291 RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 350
             D  G+TALH A    N + V  L+    +    +D+K  T L +A ++G  +  + LL
Sbjct: 119 A-DNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALL 176

Query: 351 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 383
                +    +     P DVA +  + ++  LL
Sbjct: 177 D-NFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEE 177
           K G+  LHLAAR         +L +             +Q+      + A      +   
Sbjct: 21  KTGETSLHLAARFARADAAKRLLDAGADA--------NSQDNTGRTPLHAAVAADAMGVF 72

Query: 178 MLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAA 237
            +   N  T      +   +  + A +  +E + E L      +   D S  TALH AAA
Sbjct: 73  QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAA 132

Query: 238 QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKK 295
             + + VN LL   +N      +  +T L  AAR G  E  KAL+    +      TD  
Sbjct: 133 VNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFANREI---TDHM 188

Query: 296 GQTALHMAVKGQNEDIV--LE 314
            +    +A +  + DIV  L+
Sbjct: 189 DRLPRDVASERLHHDIVRLLD 209

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 6/160 (3%)

Query: 192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
           R G D    AA +G ++ ++ LL          +    TAL           +  L +  
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
           S   +           +         V      D +     D  G   +H+AV+  +  +
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEGHTAV 116

Query: 312 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 351
           V  L     S L   D +G T L +A+++G   +V  L  
Sbjct: 117 VSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 3e-09
 Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 11/165 (6%)

Query: 119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           R   +L  AA  G++  V  +L     +         N+ G+T L V      A+ +E +
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVH-----PDALNRFGKTALQVMMFGSTAIALELL 55

Query: 179 LQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ 238
            Q  +         +             L+VL     E    V   D + +  +H A  +
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV----EHGADVNVPDGTGALPIHLAVQE 111

Query: 239 GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 283
           GH  VV+FL        +     G T L  A + G  ++V  L  
Sbjct: 112 GHTAVVSFLAAESDLHRR--DARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 5e-09
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
             L  AAA+G +  V  LL  +          GKT L           ++ L        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
             T               +   V   +    + + + D  G   +H+A+++G T +V   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKV---LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF- 119

Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 385
                 D++  +  G +PL++A + G  +L  +L+ 
Sbjct: 120 -LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 114 DSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHAL 173
           + P   G L +HLA + G+ + V  +    D +       +++  G TPL +A + G   
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH-------RRDARGLTPLELALQRGAQD 147

Query: 174 IVEEMLQHM 182
           +V+ +  HM
Sbjct: 148 LVDILQGHM 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 329 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 367
           +    L  A  +G  Q VR LL  E +  ++LN+ G++ 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.6 bits (137), Expect = 2e-10
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
             L  AA  G  D V  L+   +         G + LH AA+ GH    +  V       
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTE--VLLRAGVS 59

Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
                K           +    ++E++    + +  +D    TALH A +    ++V  L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE-L 118

Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 384
           L   G DV++ +K  ++  D++   GN +L  +L+
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (126), Expect = 5e-09
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 158 EGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEF 217
           +    L  AA +G    V  ++ +     A         S    A Q       E+L   
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG----APFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 218 PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 277
                       T LH AA++GH ++V  LL+  ++          T LH A    H EV
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEV 115

Query: 278 VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 317
           V+ L+        +  K  +TA  +++   NED+  E+++
Sbjct: 116 VELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLA-EILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (110), Expect = 7e-07
 Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 13/163 (7%)

Query: 121 DL--QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEM 178
           DL  +L  AARAG     + IL +  A          +  G +PL++AA+ GH    E +
Sbjct: 1   DLGKKLLEAARAGQDD-EVRILMANGAPFTT------DWLGTSPLHLAAQYGHFSTTEVL 53

Query: 179 LQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ 238
           L+      A             +    ++  +    G   N      ++    LH A   
Sbjct: 54  LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA---LHWATEH 110

Query: 239 GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKAL 281
            H +VV  L++  +++        KT    +   G+ ++ + L
Sbjct: 111 NHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (134), Expect = 5e-10
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 10/130 (7%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAK-----IARNNGKTVLHSAARM---GHLEVVKAL 281
            +L  A     I  +        +L +           +T LH A R      L +V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 282 VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 341
           V    +   +T K      +  +    E +  +L+    + +++ +  G T L IA +  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECL--KLLLRGKASIEIANESGETPLDIAKRLK 125

Query: 342 RTQIVRCLLS 351
                  L  
Sbjct: 126 HEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 7e-10
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 266 LHSAARMGHLEVVKALVSK-----DPSTGFRTDKKGQTALHMAVKGQNE---DIVLELIR 317
           L  A +   +  +    +      +        +  +TALH+AV+  +     IV  L++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 377
              ++ K          +  +      +           +   N++GE+PLD+A++L + 
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLL--LRGKASIEIANESGETPLDIAKRLKHE 127

Query: 378 ELFSLLKEAGAAHSKDH 394
               LL +A +     H
Sbjct: 128 HCEELLTQALSGRFNSH 144

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 2/127 (1%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  A +  ++  +++          K  L+  ++  ET L++A  S     +  ++  + 
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL-HIVDFLV 68

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMT-TDLSCSTALHTAAAQGHID 242
             + ++  + G  S  +             L       +   + S  T L  A    H  
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 128

Query: 243 VVNFLLE 249
               L +
Sbjct: 129 CEELLTQ 135

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 2e-09
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 3/123 (2%)

Query: 229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 288
           +  L TAAA+G ++ V  LLE     A     N          M     V  L+    + 
Sbjct: 4   ADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 289 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 348
               D    T        +     L ++    + L + D  G   + +A + G   + R 
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 349 LLS 351
           L +
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 9e-07
 Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 4/125 (3%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
               L  AA  G    V  +L+      A+  A N Y    +         + ELL    
Sbjct: 3   SADWLATAAARGRVEEVRALLEAG----ANPNAPNSYGRRPIQVMMMGSARVAELLLLHG 58

Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
                 D +  T     AA+        +L        +    G+  +  A  +GH +V 
Sbjct: 59  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 279 KALVS 283
           + L +
Sbjct: 119 RYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-05
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 3/125 (2%)

Query: 262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 321
               L +AA  G +E V+AL+    +         +    M +       +L L   +P+
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 322 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 381
                                T +V       G  ++  +  G  P+D+AE+LG+ ++  
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLH---RAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 382 LLKEA 386
            L+ A
Sbjct: 120 YLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-05
 Identities = 18/126 (14%), Positives = 28/126 (22%), Gaps = 9/126 (7%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AA  G +   +  L    AN         N                      L  ++
Sbjct: 7   LATAAARGRVE-EVRALLEAGAN--------PNAPNSYGRRPIQVMMMGSARVAELLLLH 57

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
               +             A +        +L      +   D      +  A   GH DV
Sbjct: 58  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 117

Query: 244 VNFLLE 249
             +L  
Sbjct: 118 ARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-05
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 194 GYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID 251
             D    AA +G +E ++ LL  G  PN   +        +   +A+    ++    E +
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 311
                                  + + +A    D       D  G+  + +A +  + D+
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-----RDAWGRLPVDLAEELGHRDV 117

Query: 312 VLELI 316
              L 
Sbjct: 118 ARYLR 122

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 3e-09
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 289
             L +AAA+G ++ +  LL+ + N+   A+N          ++G+ E+ + L+ +  +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVN--AQNGFGRTALQVMKLGNPEIARRLLLRGANPD 60

Query: 290 FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 349
            +           A  G  + +  + +    + + +EDN+GN  LH+A K+G  ++V  L
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTL--QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 350 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 387
           +     +V   N  G++  D+A   G  E+ SL++  G
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 8e-09
 Identities = 39/161 (24%), Positives = 60/161 (37%), Gaps = 10/161 (6%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  AA  G+L   +  L   + N     ++ +N  G T L                  + 
Sbjct: 5   LASAAARGDL-EQLTSLLQNNVN-----VNAQNGFGRTALQ---VMKLGNPEIARRLLLR 55

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV 243
                +  R G+   H AA+ G      + L EF   V   D   +  LH AA +GH+ V
Sbjct: 56  GANPDLKDRTGFAVIHDAARAGF-LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 114

Query: 244 VNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 284
           V FL++  ++      + G T    A   G  EVV  + + 
Sbjct: 115 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 5/156 (3%)

Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL 220
             L  AA  G    +  +LQ+      ++ A+NG+    +   +     +   L      
Sbjct: 3   NELASAAARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 280
               D +    +H AA  G +D +  LLE  +++          + H AA+ GHL VV+ 
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEF 117

Query: 281 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 316
           LV    S     + KG TA  +A      ++V  + 
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 34/124 (27%)

Query: 264 TVLHSAARMGHLEVVKALVSK--------------------------------DPSTGFR 291
            +L  ++  G  ++V+ ++ +                                       
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA--LHIAIKKGRTQIVRCL 349
            D  G T LH A    N  +   L+    +V  +  +   TA      +++G TQ  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 350 LSIE 353
             ++
Sbjct: 123 YGVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL 220
             L  ++  G   +V+ ++  ++  +      +   +    A       + + L +F   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVN 59

Query: 221 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV--LHSAARMGHLEVV 278
           V   D    T LH AA+  ++ V  FL+E  + +  +  ++ +T          G+ +  
Sbjct: 60  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 119

Query: 279 KALVSKDPSTG 289
           + L       G
Sbjct: 120 QFLYGVQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 10/133 (7%)

Query: 124 LHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMN 183
           L  ++  G    V  I+   D     +                      +     +   +
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 184 LETASIPARNGYDSFHVAAKQGHLEVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHI 241
                    +G+   H AA   +++V K L+  G     +  +D+  +        +G+ 
Sbjct: 65  --------SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 116

Query: 242 DVVNFLLEIDSNL 254
               FL  +   +
Sbjct: 117 QCSQFLYGVQEKM 129

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 7/123 (5%)

Query: 228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 287
           C      A   G +D V   +        + R                ++          
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVA---KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 58

Query: 288 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 347
                  K      ++   +     ++L+    +   ++   G TAL         Q ++
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIK 114

Query: 348 CLL 350
            LL
Sbjct: 115 ALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 8/124 (6%)

Query: 159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFP 218
            +     A ++G    V++ +        ++        +     Q  +           
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL---LKG 58

Query: 219 NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 278
             +   D    T L +A  +GH+  V   L        +   +G T L +       + +
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKL-LLSKGADKTVKGPDGLTALEATDN----QAI 113

Query: 279 KALV 282
           KAL+
Sbjct: 114 KALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	630
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.81
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=321.04  Aligned_cols=306  Identities=28%  Similarity=0.385  Sum_probs=256.6

Q ss_pred             cccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcC
Q 006802           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK  155 (630)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~  155 (630)
                      |++|.+.+.|.++..+.+.             +.+.+++..|..|+||||+||+.|+.++|++||++|.+      ++.+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll-------------~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad------i~~~   62 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLL-------------QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK------VNAK   62 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHH-------------HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC------SSCC
T ss_pred             ChHHHHHHCcCHHHHHHHH-------------HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC------CCCC
Confidence            6788888888887776443             24577899999999999999999999999999999764      6788


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcCCc-------------------------------cccccCCCCCCcHHHHHHHc
Q 006802          156 NQEGETPLYVAAESGHALIVEEMLQHMNL-------------------------------ETASIPARNGYDSFHVAAKQ  204 (630)
Q Consensus       156 n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~-------------------------------~~~~~~~~~g~t~Lh~A~~~  204 (630)
                      |..|.||||+|+..|+.+++++|+.....                               ......+..+.++++.|+..
T Consensus        63 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  142 (408)
T d1n11a_          63 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY  142 (408)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHc
Confidence            99999999999999999999999865211                               12234566788899999999


Q ss_pred             CCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchh-----------------------------
Q 006802          205 GHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA-----------------------------  255 (630)
Q Consensus       205 g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~-----------------------------  255 (630)
                      ++.++++.|++.+.+ ++..+.+|.+|||+|+..|+.+++++|+++|+++.                             
T Consensus       143 ~~~~~v~~ll~~~~~-~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~  221 (408)
T d1n11a_         143 GKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG  221 (408)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCC-CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhcc
Confidence            999999999988877 45667788899999999999999999998877641                             


Q ss_pred             ---hhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCCh
Q 006802          256 ---KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT  332 (630)
Q Consensus       256 ---~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~T  332 (630)
                         ...+.+|.||||.|+..++.++++.+++........ +..|.|||+.|++.++.+++++|++.+.++ +..+..+.|
T Consensus       222 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t  299 (408)
T d1n11a_         222 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYT  299 (408)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCC
T ss_pred             ccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccc-cCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccc
Confidence               112345677778888888888888888777766654 788899999999999999999999888775 778888999


Q ss_pred             HHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCchHHHH
Q 006802          333 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  404 (630)
Q Consensus       333 pLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~~~~~~~~l  404 (630)
                      |||.|+..++.++++++++ .|+++|.+|..|+||||+|++.|+.+++++|+++||++...+..|.++....
T Consensus       300 ~L~~~~~~~~~~~~~~ll~-~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         300 PLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             cchhhcccCcceeeeeecc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999998 8999999999999999999999999999999999999998888888887654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=314.11  Aligned_cols=309  Identities=27%  Similarity=0.354  Sum_probs=260.6

Q ss_pred             cccccccccccCCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHHH
Q 006802           59 QQSFHGVTIDKQPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVME  138 (630)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~  138 (630)
                      .+...|++++..+..|.++++.+...|+.+..+.+.             +++.+++.++..|.||||+|+..|+.++++.
T Consensus        18 ~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll-------------~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~   84 (408)
T d1n11a_          18 NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL-------------QNKAKVNAKAKDDQTPLHCAARIGHTNMVKL   84 (408)
T ss_dssp             HHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH-------------HHTCCSSCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-------------HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            345678899999999999999999998877766332             2467789999999999999999999999999


Q ss_pred             HHHhcChhh---------------------------hhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCC
Q 006802          139 ILQSCDANE---------------------------AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPA  191 (630)
Q Consensus       139 Ll~~~~~~~---------------------------~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~  191 (630)
                      |+.......                           ........+..+.++|+.|+..++.+++++|+++  +...+..+
T Consensus        85 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~--~~~~~~~~  162 (408)
T d1n11a_          85 LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER--DAHPNAAG  162 (408)
T ss_dssp             HHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCC
T ss_pred             HHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc--CCCCCcCC
Confidence            997754210                           0011334567788888888888888888888887  45566677


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--------------------------------ccCCCCCChHHHHHHHcC
Q 006802          192 RNGYDSFHVAAKQGHLEVLKELLGEFPNLV--------------------------------MTTDLSCSTALHTAAAQG  239 (630)
Q Consensus       192 ~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~--------------------------------~~~d~~g~tpL~~Aa~~g  239 (630)
                      .+|.+|||+|+..|+.+++++|++++++..                                ...+..+.|||++|+..+
T Consensus       163 ~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  242 (408)
T d1n11a_         163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG  242 (408)
T ss_dssp             SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhC
Confidence            788888888888888888888887766531                                123456678888888889


Q ss_pred             CHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCC
Q 006802          240 HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD  319 (630)
Q Consensus       240 ~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~  319 (630)
                      +.++++++++.+... +..+..|.|||+.|+..++.+++++|++.++++... +..+.||||.++..++.++++++++.+
T Consensus       243 ~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~-~~~~~t~L~~~~~~~~~~~~~~ll~~g  320 (408)
T d1n11a_         243 HAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQ  320 (408)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             cHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccc-cccccccchhhcccCcceeeeeecccc
Confidence            999999998887776 667889999999999999999999999999998765 788999999999999999999999998


Q ss_pred             CCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          320 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       320 ~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      .++ |.+|.+|+||||+|++.|+.++|++|++ .|+|+|.+|+.|+||||+|++.|+.+++++|...
T Consensus       321 ~~i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         321 ADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccc-cccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            876 9999999999999999999999999999 8999999999999999999999999999977544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-35  Score=288.25  Aligned_cols=247  Identities=23%  Similarity=0.224  Sum_probs=181.9

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCC
Q 006802          115 SPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNG  194 (630)
Q Consensus       115 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g  194 (630)
                      ..+++|+||||+||+.|+.+++++|++.+.+.   ..++.+|..|+||||+|+..|+.+++++|+++  +.+++..|.+|
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~---~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~i~~~d~~g   78 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGG   78 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTS
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc---ccccCcCCCCCCccchHHhhcccccccccccc--ccccccccccc
Confidence            46789999999999999999999999887653   44788899999999999999999999999998  56778889999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC
Q 006802          195 YDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH  274 (630)
Q Consensus       195 ~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~  274 (630)
                      .||||+|+..|+.+++++|++.......    .....+.........+                  ....++........
T Consensus        79 ~tpL~~A~~~~~~~~~~~Ll~~~~~~~~----~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~  136 (255)
T d1oy3d_          79 HTALHLACRVRAHTCACVLLQPRPSHPR----DASDTYLTQSQDCTPD------------------TSHAPAAVDSQPNP  136 (255)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCC----CC----------------------------------------------
T ss_pred             chhhhhhhccCchHHHHHHHhhccchhc----ccchhhhhHHhhhccc------------------chHHHHHHHhhcch
Confidence            9999999999999999999887654321    1111111110000000                  00011111111111


Q ss_pred             HH-HHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhccc
Q 006802          275 LE-VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  353 (630)
Q Consensus       275 ~~-iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  353 (630)
                      .. ....+...+..... +|..|.||||+|++.++.+++++|++.+....+..+..|.||||+|++.|+.+++++|++ .
T Consensus       137 ~~~~~~~~~~~~~~in~-~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~  214 (255)
T d1oy3d_         137 ENEEEPRDEDWRLQLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-A  214 (255)
T ss_dssp             -------CCCGGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-T
T ss_pred             hHHHHHHhhhcCccccc-ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHH-C
Confidence            11 11111222333333 488899999999999999999999998888766778899999999999999999999998 8


Q ss_pred             CCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          354 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       354 g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      |++++.+|+.|+||||+|+..++.+++++|+++||+.
T Consensus       215 gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999973

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-34  Score=276.92  Aligned_cols=219  Identities=28%  Similarity=0.393  Sum_probs=124.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 006802          120 GDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFH  199 (630)
Q Consensus       120 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh  199 (630)
                      +++.|+.+|..|+.+.|+.+|...+     ..++.+|..|+||||+|+..|+.+++++|++..  ......+..+.++++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~-----~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~--~~~~~~~~~~~~~~~   75 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLH   75 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT--CCSCCCCTTCCCHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCC-----CcCcCcCCCCCCHHHHHHHhhhhcccccccccc--ccccccccccccccc
Confidence            3567777777777777777776543     336677777777777777777777777777762  333334455566666


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHH
Q 006802          200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK  279 (630)
Q Consensus       200 ~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~  279 (630)
                      .|+..|+.+++++|++++++ ++..|..|.||||+|+..|+.+++++|+++|.++ +..+..|.||||+|+..++.++++
T Consensus        76 ~~~~~~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~  153 (223)
T d1uoha_          76 IAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIH  153 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhh
Confidence            66666666666666666554 3445555666666666666666666666655554 444555555555555555555555


Q ss_pred             HHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHh
Q 006802          280 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  350 (630)
Q Consensus       280 ~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll  350 (630)
                      +|++.+.++... |..|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+| ..|+.+++++|+
T Consensus       154 ~L~~~~~~i~~~-d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~-~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         154 ILLYYKASTNIQ-DTEGNTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             HHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             hhccccceeeec-cCCCCceeccccccCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            555554444332 444444444444444444444444444332 44444444444443 234444444444

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-33  Score=281.10  Aligned_cols=265  Identities=28%  Similarity=0.369  Sum_probs=228.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcC-CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcH
Q 006802          119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKK-NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (630)
Q Consensus       119 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~-n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~  197 (630)
                      .++|+||.|++.|+.++|++||+.|.+      ++.+ +..|+||||+|+..|+.+++++|++.  +......+..+.+|
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~d------in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~--~~~~~~~~~~~~~~   75 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCC------cCccCCCCCCCHHHHHHHcCCHHHhhhhccc--cccccccccccchh
Confidence            357999999999999999999999865      4433 45799999999999999999999998  34556677788999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCch---------hhhhccCCCcHHHH
Q 006802          198 FHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHS  268 (630)
Q Consensus       198 Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~---------~~~~d~~g~tpLh~  268 (630)
                      .+.|+..+..+.....++.... ....+..+.++++.|+..|+...++.+++...+.         ....+..|.||||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T d1wdya_          76 FLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             hHHHhhcCCccccchhhhhccc-ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHH
Confidence            9999999999999999988766 4456788999999999999999999999865443         23345679999999


Q ss_pred             HHHcCCHHHHHHHHhC-CCCCCcccCCCCCchhhhh----ccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcH
Q 006802          269 AARMGHLEVVKALVSK-DPSTGFRTDKKGQTALHMA----VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  343 (630)
Q Consensus       269 Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A----a~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~  343 (630)
                      |+..|+.+++++|++. +.++.. .+..|.++++.+    ...+..+++++|++.++++ +.+|..|.||||.|+..|+.
T Consensus       155 A~~~~~~~~~~~Ll~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~  232 (285)
T d1wdya_         155 AAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHL  232 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCTTC-CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHhccCCCccc-ccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcH
Confidence            9999999999999976 555544 488888877654    3444567999999998876 88999999999999999999


Q ss_pred             HHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 006802          344 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH  394 (630)
Q Consensus       344 ~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~  394 (630)
                      ++|++|++..|+++|.+|.+|.||||+|++.|+.+++++|+++||+++..+
T Consensus       233 ~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            999999987899999999999999999999999999999999999987643

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=277.22  Aligned_cols=220  Identities=26%  Similarity=0.310  Sum_probs=202.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHc
Q 006802          159 GETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQ  238 (630)
Q Consensus       159 g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~  238 (630)
                      +.+.|+.+|..|+.+.|+.++.. .+..++..|.+|+||||+|+..|+.++++++++...... ..+..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~-~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHh-CCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-cccccccccccccccc
Confidence            46899999999999999988876 356778899999999999999999999999999887744 4566788999999999


Q ss_pred             CCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcC
Q 006802          239 GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP  318 (630)
Q Consensus       239 g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~  318 (630)
                      |+.+++++|+++++++ +..|.+|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..++.+++++|+..
T Consensus        81 ~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~-~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCccchhhhhcCCcchhhhhccc
Confidence            9999999999999887 778999999999999999999999999999988754 89999999999999999999999998


Q ss_pred             CCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHH
Q 006802          319 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  385 (630)
Q Consensus       319 ~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~  385 (630)
                      +.++ +.+|.+|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|. .|+.+++++|++
T Consensus       159 ~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         159 KAST-NIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             TCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             ccee-eeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            8875 9999999999999999999999999999 89999999999999999984 689999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-34  Score=276.34  Aligned_cols=224  Identities=23%  Similarity=0.239  Sum_probs=160.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc--cccCCCCCChHHHHHHHc
Q 006802          161 TPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNL--VMTTDLSCSTALHTAAAQ  238 (630)
Q Consensus       161 TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~--~~~~d~~g~tpL~~Aa~~  238 (630)
                      ||||+||..|+.++|+.||+.. +..++.+|.+|.||||+|+..|+.+++++|+++++++  ....+..|.+|+|+++..
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4555555555555555444431 2233444445555555555555555555555544332  233455666666666666


Q ss_pred             CCHHHHHHHHhcCCch-hhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhc
Q 006802          239 GHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR  317 (630)
Q Consensus       239 g~~e~v~~LL~~~~~~-~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~  317 (630)
                      +..++++.++..+... ....+..+.||++.++..++.++++.|++.+...... |..|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccc-CCCCCCccchhhhcccccccccccc
Confidence            6666666666665433 1234556778888888888888888888877776654 7888888888888888888888888


Q ss_pred             CCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q 006802          318 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  389 (630)
Q Consensus       318 ~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~  389 (630)
                      .++..++.+|.+|+||||+|+..|+.++|++|++..|+|++.+|..|+||||+|+   +.+++++|++.|+|
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            8877779999999999999999999999999998679999999999999999987   46899999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-32  Score=266.90  Aligned_cols=225  Identities=28%  Similarity=0.387  Sum_probs=198.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcc-ccccCCCCCCcHHH
Q 006802          121 DLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLE-TASIPARNGYDSFH  199 (630)
Q Consensus       121 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~-~~~~~~~~g~t~Lh  199 (630)
                      +||||+||+.|+.+.|+.||+..+     ..++.+|.+|+||||+|+..|+.+++++|++++... .....+..|.+|+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~-----~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~   75 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKP-----SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH   75 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCG-----GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCC-----CcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccc
Confidence            489999999999999999998754     348899999999999999999999999999984322 23456778999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCc-cccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHH
Q 006802          200 VAAKQGHLEVLKELLGEFPNL-VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV  278 (630)
Q Consensus       200 ~A~~~g~~eiv~~Ll~~~~~~-~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv  278 (630)
                      +++..+..++++.++..+... ....+..+.||++.++..++.+++++|++.+... ...+.+|+||||+|+..|+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          76 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccc
Confidence            999999999999998877543 3446678899999999999999999999999886 66789999999999999999999


Q ss_pred             HHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcC-CCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCC
Q 006802          279 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  356 (630)
Q Consensus       279 ~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  356 (630)
                      ++|++.++.....+|..|+||||+|+..|+.+++++|++. |.++ +.+|.+|+||||+|+.   .+++++|++ .|+|
T Consensus       155 ~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~-~~~d~~g~t~l~~A~~---~~~~~~Ll~-~g~d  228 (229)
T d1ixva_         155 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-DLVDNKGAKAEDVALN---EQVKKFFLN-NVVD  228 (229)
T ss_dssp             HHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-CCCCTTSCCTGGGCSC---HHHHHHHHH-HCCC
T ss_pred             ccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCC-CCcCCCCCCHHHHHhh---HHHHHHHHH-cCCC
Confidence            9999998766556699999999999999999999999976 5555 9999999999999984   589999999 7876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2e-33  Score=281.30  Aligned_cols=256  Identities=20%  Similarity=0.231  Sum_probs=206.4

Q ss_pred             ChHHHHHHHcC-CHHHHHHHHHhcChhhhhHHhhcCC-CCCCcHHHHHHHhCCHHHHHHHHhcC------CccccccCCC
Q 006802          121 DLQLHLAARAG-NLSRVMEILQSCDANEAKDLLSKKN-QEGETPLYVAAESGHALIVEEMLQHM------NLETASIPAR  192 (630)
Q Consensus       121 ~T~Lh~Aa~~g-~~~~v~~Ll~~~~~~~~~~~l~~~n-~~g~TpLh~Aa~~g~~eiv~~LL~~~------~~~~~~~~~~  192 (630)
                      +||||+|+..+ +.++++.|.+.+        ++..+ ..|+||||+||..|+.++|+.|+.+.      .+++++..|.
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~--------~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~   72 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRES--------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC   72 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTT--------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcC--------CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC
Confidence            58899777654 444444444332        23333 46999999999999999999887642      2457788899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCch--hhhhccCCCcHHHHHH
Q 006802          193 NGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL--AKIARNNGKTVLHSAA  270 (630)
Q Consensus       193 ~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~--~~~~d~~g~tpLh~Aa  270 (630)
                      +|.||||+|+..|+.+++++|++++++ ++..|..|.|||++|+..++.++++++...+...  .+..+..+.++.+.+.
T Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  151 (277)
T d2fo1e1          73 DENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  151 (277)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCeeeccccccccccccccccccccc-cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHH
Confidence            999999999999999999999999988 5667889999999999999999999988764322  1335677899999999


Q ss_pred             HcCCHH---HHHHHHhCCCCC-------CcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHh
Q 006802          271 RMGHLE---VVKALVSKDPST-------GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  340 (630)
Q Consensus       271 ~~g~~~---iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~  340 (630)
                      ..+..+   .+..+.+.....       ....+..|.||||.++..++.+++++++.......+.+|..|+||||+|+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~  231 (277)
T d2fo1e1         152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  231 (277)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHc
Confidence            877643   444444432221       1124678999999999999999999888766666688999999999999999


Q ss_pred             CcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          341 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       341 g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      |+.++|++|++ .|+|+|.+|..|+||||+|+..|+.+++++|.+.
T Consensus       232 g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         232 GRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             TCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999 8999999999999999999999999999999763

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=4.4e-32  Score=273.96  Aligned_cols=248  Identities=22%  Similarity=0.306  Sum_probs=204.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCc
Q 006802          117 GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYD  196 (630)
Q Consensus       117 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t  196 (630)
                      ...|.|+||.||+.|+.++|++||+.|.+      ++.+|.+|.||||+|+..|+.++|++|++++  ......+..+.+
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gad------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~--~~~~~~~~~~~~  108 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWI  108 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCC
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCcHHHHHHhcCCceeeeeecccc--cccccccccccc
Confidence            34567999999999999999999999864      6788999999999999999999999999983  455667788999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHH
Q 006802          197 SFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE  276 (630)
Q Consensus       197 ~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~  276 (630)
                      ||+.|+..++.++++.|++.+.. ....|..+.+|+++|+..++.+.++.++.............+..+.+       ..
T Consensus       109 ~L~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~  180 (291)
T d1s70b_         109 PLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------RD  180 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------HH
T ss_pred             cccccccccccchhhcccccCcc-cccccccCccccccccccccchhcccccccccccccccccccccccc-------cc
Confidence            99999999999999999998876 45678899999999999999999999996543322222222222222       12


Q ss_pred             HHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCC
Q 006802          277 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  356 (630)
Q Consensus       277 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  356 (630)
                      ....+...... ....+..|.||||.|+..|+.++++.|++.+.++ |.+|.+|+||||+|+..|+.++|++|++ +|+|
T Consensus       181 ~~~~~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~-~Gad  257 (291)
T d1s70b_         181 ARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE-NLCD  257 (291)
T ss_dssp             HHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCC
T ss_pred             chhhhcccccc-cccccCCCCChhhHHHHcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHH-CCCC
Confidence            22333333323 3335888999999999999999999999998876 8999999999999999999999999999 8999


Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          357 VNSLNKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       357 in~~n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      ++.+|+.|+||||+|++    +++++|.+.+
T Consensus       258 v~~~d~~G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         258 MEAVNKVGQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             TTCCCTTSCCTTTSCCS----GGGHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHH----HHHHHHHHHh
Confidence            99999999999999974    5777776553

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=6.5e-30  Score=255.49  Aligned_cols=236  Identities=20%  Similarity=0.253  Sum_probs=191.8

Q ss_pred             CCCCC-CCCChHHHHHHHcCCHHHHHHHHHhcChhh--hhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCcccccc
Q 006802          113 KDSPG-KRGDLQLHLAARAGNLSRVMEILQSCDANE--AKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASI  189 (630)
Q Consensus       113 ~~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~--~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~  189 (630)
                      ++..+ .+|.||||+||..|+.++|+.|+......-  .+..++.+|..|+||||+|+..|+.++|++|+++  +.+++.
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~--Gad~n~  102 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA--GADPTI  102 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccc--cccccc
Confidence            33444 469999999999999999999876533110  0123678999999999999999999999999998  567788


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCC--CccccCCCCCChHHHHHHHcCCHH---HHHHHHhcCCch-------hhh
Q 006802          190 PARNGYDSFHVAAKQGHLEVLKELLGEFP--NLVMTTDLSCSTALHTAAAQGHID---VVNFLLEIDSNL-------AKI  257 (630)
Q Consensus       190 ~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~--~~~~~~d~~g~tpL~~Aa~~g~~e---~v~~LL~~~~~~-------~~~  257 (630)
                      .+.+|.|||++|+..++.++++.+.....  ......+..+.++.+.+...+..+   .+..+.+.....       ...
T Consensus       103 ~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (277)
T d2fo1e1         103 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  182 (277)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccc
Confidence            89999999999999999999999876542  123456778889999999877544   444444432211       133


Q ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHH
Q 006802          258 ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  337 (630)
Q Consensus       258 ~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A  337 (630)
                      .+..|.||||.++..++.++++.++..........|..|+||||+|++.|+.+++++|++.++++ +.+|.+|+||||+|
T Consensus       183 ~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi-n~~d~~G~T~L~~A  261 (277)
T d2fo1e1         183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLA  261 (277)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSSSCCHHHHH
T ss_pred             cccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCcCCCCCCHHHHH
Confidence            45679999999999999999998776655555556999999999999999999999999999876 89999999999999


Q ss_pred             HHhCcHHHHHHHhc
Q 006802          338 IKKGRTQIVRCLLS  351 (630)
Q Consensus       338 ~~~g~~~iv~~Ll~  351 (630)
                      ++.|+.++|++|++
T Consensus       262 ~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         262 QANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHH
Confidence            99999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=247.51  Aligned_cols=263  Identities=21%  Similarity=0.257  Sum_probs=217.6

Q ss_pred             cccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCC-CCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhc
Q 006802           76 VMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPG-KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSK  154 (630)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~  154 (630)
                      ++++.+...+.++..+.+.             +.+.+++.++ ..|.||||+||..|+.++++.|++.+..      ...
T Consensus         7 ~~L~~Ai~~~~~e~vk~Ll-------------~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~------~~~   67 (285)
T d1wdya_           7 HLLIKAVQNEDVDLVQQLL-------------EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PVL   67 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHH-------------HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTC
T ss_pred             HHHHHHHHcCCHHHHHHHH-------------HCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc------ccc
Confidence            4455566666665554221             2456677654 5799999999999999999999988664      466


Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---------ccCC
Q 006802          155 KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLV---------MTTD  225 (630)
Q Consensus       155 ~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~---------~~~d  225 (630)
                      .+..+.+|.+.|+..+..+....+++..  ......+..+.++++.|+..|+...++.++.......         ...+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (285)
T d1wdya_          68 RKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR  145 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTT
T ss_pred             cccccchhhHHHhhcCCccccchhhhhc--ccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhc
Confidence            6778999999999999999999999873  3344567789999999999999999999987655432         2345


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhc-CCchhhhhccCCCcHHHHHHHcC----CHHHHHHHHhCCCCCCcccCCCCCchh
Q 006802          226 LSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGKTVLHSAARMG----HLEVVKALVSKDPSTGFRTDKKGQTAL  300 (630)
Q Consensus       226 ~~g~tpL~~Aa~~g~~e~v~~LL~~-~~~~~~~~d~~g~tpLh~Aa~~g----~~~iv~~Ll~~~~~~~~~~d~~g~t~L  300 (630)
                      ..|.||||+|+..|+.+++++|+++ |.++ +..+..|.++++.+...+    ..+++++|+++++++... |..|.|||
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~-~~~g~t~L  223 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPL  223 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCcc-CCCCCCcc
Confidence            6789999999999999999999976 5554 778888999888776543    357999999999998765 89999999


Q ss_pred             hhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccC
Q 006802          301 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK  362 (630)
Q Consensus       301 h~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~  362 (630)
                      |.|++.|+.+++++|++.++..++.+|.+|+||||+|++.|+.++|++|++ .|+|+|.+|.
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             chhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcccC
Confidence            999999999999999987555569999999999999999999999999999 8999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-29  Score=240.58  Aligned_cols=221  Identities=24%  Similarity=0.272  Sum_probs=148.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHhcC--CccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHH
Q 006802          158 EGETPLYVAAESGHALIVEEMLQHM--NLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTA  235 (630)
Q Consensus       158 ~g~TpLh~Aa~~g~~eiv~~LL~~~--~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~A  235 (630)
                      +|+||||+||..|+.++|+.|++..  .+.+++..|.+|+||||+|+..|+.+++++|++.++. .+..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc-ccccccccccccccc
Confidence            3555555555555555555555421  1334455555666666666666666666666665554 233445556666666


Q ss_pred             HHcCCHHHHHHHHhcCCch---hhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHH
Q 006802          236 AAQGHIDVVNFLLEIDSNL---AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV  312 (630)
Q Consensus       236 a~~g~~e~v~~LL~~~~~~---~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv  312 (630)
                      ...++.++++.+.......   .+.......++|+.+.........+.|.....+.....+..|.++|+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            6666666666555443221   1223445667777777777777777777777666666677788888888888888888


Q ss_pred             HHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 006802          313 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS  381 (630)
Q Consensus       313 ~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~  381 (630)
                      +.+++.+... +.+|.+|+||||+|+..|+.+++++|++ .|+|+|.+|..|+||||+|++.|+.++++
T Consensus       161 ~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhcccc-ccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            8888777655 7778888888888888888888888887 78888888888888888888887777663

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-29  Score=240.56  Aligned_cols=224  Identities=23%  Similarity=0.294  Sum_probs=195.8

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcH
Q 006802          118 KRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDS  197 (630)
Q Consensus       118 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~  197 (630)
                      .+|+||||+||..|+.++|+.|++.....  ...++.+|..|+||||+|+..|+.+++++|+++  +...+.....|.++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~--g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCccCCCCCccceehhcccccccccccccc--cccccccccccccc
Confidence            36999999999999999999998642211  223788899999999999999999999999998  45666778889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCC
Q 006802          198 FHVAAKQGHLEVLKELLGEFPN---LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH  274 (630)
Q Consensus       198 Lh~A~~~g~~eiv~~Ll~~~~~---~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~  274 (630)
                      ++.|...++.++++.+......   ..........+||+.+.........+.|.....+.....+..|.+||+.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            9999999999999988765432   2334456778999999999999999999998887766677889999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHH
Q 006802          275 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR  347 (630)
Q Consensus       275 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~  347 (630)
                      .++++.+++.+...... |..|.||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+++|+.++|+
T Consensus       157 ~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~-n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhhhccccccc-cccCcchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999888765 899999999999999999999999999875 899999999999999999999885

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-29  Score=242.71  Aligned_cols=198  Identities=22%  Similarity=0.296  Sum_probs=160.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHH
Q 006802          119 RGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSF  198 (630)
Q Consensus       119 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~L  198 (630)
                      +|+||||+|+..|+.++++.|++.....  ...++.+|..|+||||+|+..|+.+++++|++.  +.+.+..+..|.|||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~--~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~--g~d~~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC--CCCcccCCCCCCccccccccccccccccccccc--ccccccccccccccc
Confidence            5899999999999977666655443221  233778899999999999999999999999987  456777888999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCC-----ccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcC
Q 006802          199 HVAAKQGHLEVLKELLGEFPN-----LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG  273 (630)
Q Consensus       199 h~A~~~g~~eiv~~Ll~~~~~-----~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g  273 (630)
                      |.|+..|+.++++.|++.+..     ........|.||||.|+..++.+++++|++.|.......+.+|.||||+|+..|
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccc
Confidence            999999999999999876533     233445567899999999999999999999888876556678899999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCC
Q 006802          274 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS  321 (630)
Q Consensus       274 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~  321 (630)
                      +.+++++|++.++++... |..|+||||+|++.++.+++++|++...+
T Consensus       157 ~~~~v~~Ll~~gad~~~~-~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         157 NPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CHHHHHHHHTTTCCSCCC-CTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             cHHHHHHHHhcCCccccc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999988887654 88899999999999999999888886544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.5e-28  Score=242.75  Aligned_cols=245  Identities=16%  Similarity=0.134  Sum_probs=164.0

Q ss_pred             CCCccccccccchhhhhhhhhhhhHHHHHHHhhhcCCCccccCCCCCCCCCChHHHHHHHcCCHHHHHHHHHhcChhhhh
Q 006802           70 QPSTRGVMEKQKSFRGFIEKQKSFRVVMERQLSFIGGGERKKNKDSPGKRGDLQLHLAARAGNLSRVMEILQSCDANEAK  149 (630)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~  149 (630)
                      .+..|.|++|.+...+..+..+.+.   +.       +.....++.+|..|.||||+||..|+.++++.|++.+.+    
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll---~~-------~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~----   70 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLL---GF-------SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG----   70 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHH---HH-------HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHH---Hc-------CCCcccccCcCCCCCCccchHHhhccccccccccccccc----
Confidence            4567789999999999887665332   11       222345778899999999999999999999999998764    


Q ss_pred             HHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCC
Q 006802          150 DLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCS  229 (630)
Q Consensus       150 ~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~  229 (630)
                        ++.+|..|.||||+|+..|+.+++++|++..........     ..+.........+                  ...
T Consensus        71 --i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~-----~~~~~~~~~~~~~------------------~~~  125 (255)
T d1oy3d_          71 --VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS-----DTYLTQSQDCTPD------------------TSH  125 (255)
T ss_dssp             --SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------
T ss_pred             --ccccccccchhhhhhhccCchHHHHHHHhhccchhcccc-----hhhhhHHhhhccc------------------chH
Confidence              678899999999999999999999999987432221111     1110000000000                  000


Q ss_pred             hHHHHHHHcCCHH-HHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC
Q 006802          230 TALHTAAAQGHID-VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  308 (630)
Q Consensus       230 tpL~~Aa~~g~~e-~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  308 (630)
                      .++.......... ........+.. .+..+.+|.||||+|+..|+.+++++|++.+++.....+..|.||||+|++.|+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~  204 (255)
T d1oy3d_         126 APAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA  204 (255)
T ss_dssp             ------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHhhcchhHHHHHHhhhcCcc-cccccccCcccccccccccccccccchhcccccccccccccccccccccccccH
Confidence            1111111111111 11111222222 245677788888888888888888888888777776667778888888888888


Q ss_pred             HHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCC
Q 006802          309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  356 (630)
Q Consensus       309 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  356 (630)
                      .+++++|++++.++ +.+|.+|+||||+|+..++.+++++|++ +|++
T Consensus       205 ~~~v~~Ll~~gadi-n~~d~~g~t~L~~A~~~~~~~i~~~Ll~-~Ga~  250 (255)
T d1oy3d_         205 ASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRA-HGAP  250 (255)
T ss_dssp             HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHH-TTCC
T ss_pred             HHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCC
Confidence            88888888877665 7788888888888888888888888888 7875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-29  Score=242.62  Aligned_cols=167  Identities=26%  Similarity=0.268  Sum_probs=110.7

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCC-----CcccCCCCC
Q 006802          223 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST-----GFRTDKKGQ  297 (630)
Q Consensus       223 ~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~  297 (630)
                      ..|..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||.|+..|+.++++.|+..+...     .......|.
T Consensus        34 ~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (221)
T d1iknd_          34 FQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  112 (221)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             cCCCCCCccccccccccccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            34444555555555555555555555554443 344445555555555555555555555443221     111244567


Q ss_pred             chhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCH
Q 006802          298 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT  377 (630)
Q Consensus       298 t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~  377 (630)
                      ||||.|+..++.+++.+++..+..+....+.+|+||||+|+..|+.+++++|++ +|+|++.+|..|+||||+|+..++.
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             hhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCH
Confidence            777777777777777777777766644556678888888888888888888888 7888888888889999988888888


Q ss_pred             HHHHHHHHcCCCCc
Q 006802          378 ELFSLLKEAGAAHS  391 (630)
Q Consensus       378 ~iv~~L~~~ga~~~  391 (630)
                      +++++|.+.+.+..
T Consensus       192 ~~~~~l~~~~~~~~  205 (221)
T d1iknd_         192 RIQQQLGQLTLENL  205 (221)
T ss_dssp             HHHHHHHTTSCGGG
T ss_pred             HHHHHHHHcCCccc
Confidence            88888888876643

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=2.9e-28  Score=245.61  Aligned_cols=235  Identities=21%  Similarity=0.236  Sum_probs=193.6

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHH
Q 006802          157 QEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAA  236 (630)
Q Consensus       157 ~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa  236 (630)
                      ..+.|||+.||..|+.++|++||++  +.+++..|.+|.||||+|+..|+.+++++|++++.+ ....+..+.+||+.|+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAA  114 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc-cccccccccccccccc
Confidence            3456999999999999999999998  467788899999999999999999999999999887 4566788999999999


Q ss_pred             HcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhh
Q 006802          237 AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI  316 (630)
Q Consensus       237 ~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll  316 (630)
                      ..++.++++.|+++|... ...|.+|.+|+++|+..++.+.++.++.............+..+.+       ......+.
T Consensus       115 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  186 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-------RDARQWLN  186 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             cccccchhhcccccCccc-ccccccCccccccccccccchhcccccccccccccccccccccccc-------ccchhhhc
Confidence            999999999999999876 6678899999999999999999999997543222111111111111       11222222


Q ss_pred             cCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Q 006802          317 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK  396 (630)
Q Consensus       317 ~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~~~~~~~  396 (630)
                      ... ......+..|.||||.|+..|+.++++.|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|+++...+..
T Consensus       187 ~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~  264 (291)
T d1s70b_         187 SGH-INDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV  264 (291)
T ss_dssp             HTC-CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccc-cccccccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            222 2235668899999999999999999999999 89999999999999999999999999999999999999988888


Q ss_pred             CCchHHHH
Q 006802          397 PPSATKQL  404 (630)
Q Consensus       397 ~~~~~~~l  404 (630)
                      +.++....
T Consensus       265 G~TaL~~A  272 (291)
T d1s70b_         265 GQTAFDVA  272 (291)
T ss_dssp             SCCTTTSC
T ss_pred             CCCHHHHH
Confidence            88876543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.3e-27  Score=226.78  Aligned_cols=205  Identities=25%  Similarity=0.322  Sum_probs=118.5

Q ss_pred             HHHHHHHhcCCcccccc-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 006802          173 LIVEEMLQHMNLETASI-PARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID  251 (630)
Q Consensus       173 eiv~~LL~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~  251 (630)
                      |+|++|+++  +.+++. .|.+|.||||+||..|+.+++++|++.++. ++..+..+.++++.++..++...........
T Consensus         3 ~~v~~Ll~~--g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           3 QVISDLLAQ--GAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHC--CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-ccccccccccccccccccccccccccccccc
Confidence            445555554  223332 244455555555555555555555554444 2334445555555555555555444444433


Q ss_pred             CchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCC
Q 006802          252 SNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN  331 (630)
Q Consensus       252 ~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~  331 (630)
                      ..........|.++.+.+.........+.|...+.+.... +..|+|||+.++..+..++++.+++.+.++ +..|.+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~  157 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA-DNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDE  157 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhccccccc-CCCCCCcchhhcccCcceeeeeeccccccc-cccccccc
Confidence            3333333444555555555555555555555555554433 556666666666666666666666665554 66677777


Q ss_pred             hHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 006802          332 TALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  383 (630)
Q Consensus       332 TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L  383 (630)
                      ||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|++.|+.+++++|
T Consensus       158 TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         158 TPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            77777777777777777777 6777777777777777777777777777765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=4.1e-27  Score=224.98  Aligned_cols=206  Identities=23%  Similarity=0.268  Sum_probs=187.0

Q ss_pred             HHHHHHHHHhcChhhhhHHhhc-CCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCHHHHH
Q 006802          133 LSRVMEILQSCDANEAKDLLSK-KNQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHLEVLK  211 (630)
Q Consensus       133 ~~~v~~Ll~~~~~~~~~~~l~~-~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~  211 (630)
                      .|+|+.||+.|.+      ++. .|.+|.||||+||..|+.+++++|++.  +..++..+..+.++++.++..++.....
T Consensus         2 ~~~v~~Ll~~g~d------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~--g~~~n~~~~~~~~~~~~~~~~~~~~~~~   73 (209)
T d1ot8a_           2 AQVISDLLAQGAE------LNATMDKTGETSLHLAARFARADAAKRLLDA--GADANSQDNTGRTPLHAAVAADAMGVFQ   73 (209)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHCCCC------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh--cccccccccccccccccccccccccccc
Confidence            4899999999764      444 588999999999999999999999998  5567788999999999999999999888


Q ss_pred             HHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc
Q 006802          212 ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR  291 (630)
Q Consensus       212 ~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~  291 (630)
                      ................|.++.+.+.........+.|.+.+.++ +..+..|.|||+.++..|..++++.+++.+.+.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~  152 (209)
T d1ot8a_          74 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ  152 (209)
T ss_dssp             HHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccccccc
Confidence            8887777666667778899999999999999999999999886 677899999999999999999999999999988765


Q ss_pred             cCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHH
Q 006802          292 TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  349 (630)
Q Consensus       292 ~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~L  349 (630)
                       |..|.||||+|+..|+.++++.|++.++++ +.+|.+|+||||+|+++|+.++|++|
T Consensus       153 -d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~-n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         153 -DDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             -CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -ccccccccchhccccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence             899999999999999999999999999886 89999999999999999999999976

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=2.2e-28  Score=253.31  Aligned_cols=135  Identities=26%  Similarity=0.360  Sum_probs=77.4

Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHH---HHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccC
Q 006802          114 DSPGKRGDLQLHLAARAGNLSRVME---ILQSCDANEAKDLLSKKNQEGETPLYVAAESGHALIVEEMLQHMNLETASIP  190 (630)
Q Consensus       114 ~~~~~~g~T~Lh~Aa~~g~~~~v~~---Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~  190 (630)
                      +.++..|.||||+||++|+.++++.   |++.+..      ++.+|..|+||||+||..||.++|++|++++........
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~  157 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI  157 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            3445566677777777777655544   3444332      455666666777777777777777777766322211112


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCChHHHHHHHcCCHHHHHHHHhcCCch
Q 006802          191 ARNGYDSFHVAAKQGHLEVLKELLGEFPNLV--MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL  254 (630)
Q Consensus       191 ~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~--~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~  254 (630)
                      +.+|+||||+|+..||.+++++|++.++...  +..+.++.||++.|+..|+.+++++|++.|++.
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            2346677777777777777777776665432  222334556666666667777777777666554

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=3.4e-28  Score=251.91  Aligned_cols=235  Identities=23%  Similarity=0.228  Sum_probs=172.6

Q ss_pred             hHHhhcCCCCCCcHHHHHHHhCCHHHHHH---HHhcCCccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-C
Q 006802          149 KDLLSKKNQEGETPLYVAAESGHALIVEE---MLQHMNLETASIPARNGYDSFHVAAKQGHLEVLKELLGEFPNLVMT-T  224 (630)
Q Consensus       149 ~~~l~~~n~~g~TpLh~Aa~~g~~eiv~~---LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~-~  224 (630)
                      ...++.++..|.||||+||..||.+++++   |++.  +.+++..+.+|+||||+|+..||.++|++|++.+++.... .
T Consensus        80 ~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~  157 (346)
T d2ajaa1          80 WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI  157 (346)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH
T ss_pred             hhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            34467788999999999999999988876   4554  5677888999999999999999999999999999885332 2


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCchh--hhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc------cCCCC
Q 006802          225 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLA--KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR------TDKKG  296 (630)
Q Consensus       225 d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~--~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~------~d~~g  296 (630)
                      +.+|.||||+|+..||.++|++|++.|++..  +..+.+|.||+|.|+.+|+.+++++|++.+++....      ....+
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~  237 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY  237 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTT
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHh
Confidence            3468999999999999999999999987653  345567788999999999999999999987654321      11222


Q ss_pred             CchhhhhccCCCHHHHHHhhcCCCC-cccccCC-------CCChHHHHHHHhCcHHHHHHHhcccCCC-----cccccCC
Q 006802          297 QTALHMAVKGQNEDIVLELIRPDPS-VLKLEDN-------KGNTALHIAIKKGRTQIVRCLLSIEGID-----VNSLNKA  363 (630)
Q Consensus       297 ~t~Lh~Aa~~g~~~iv~~Ll~~~~~-~~n~~d~-------~G~TpLh~A~~~g~~~iv~~Ll~~~g~~-----in~~n~~  363 (630)
                      .++++.+...+..+....+...... ..+..+.       .+.++|+.|+..|+.+++++|++ .+..     .+..+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~-~~~~~~~~~~~~~~~~  316 (346)
T d2ajaa1         238 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS-IPGIKALAPTATIPGD  316 (346)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHT-STTTGGGSSCCSSTTC
T ss_pred             hhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHh-CcChhhhcccccCCCC
Confidence            2334444333333333333322211 1122221       23578999999999999999998 4432     3445568


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Q 006802          364 GESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       364 G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      |+||||+|++.|+.+++++|++.
T Consensus       317 g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         317 ANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             CCcHHHHHHHcCcHHHHHHHhCC
Confidence            99999999999999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5e-25  Score=200.32  Aligned_cols=154  Identities=28%  Similarity=0.488  Sum_probs=99.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCH
Q 006802          230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  309 (630)
Q Consensus       230 tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~  309 (630)
                      +|||+|+..|+.++|++|+++|+++ +..|.+|.||||+|+ .|+.+++++|++.++++... +..|.++|+.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~-~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccccc-cccCccccccccccccc
Confidence            5666666666666666666666654 555666666666554 45666666666666655443 55666666666666666


Q ss_pred             HHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 006802          310 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  387 (630)
Q Consensus       310 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~g  387 (630)
                      +.+..++..+... +..|..|.+|||+|+..++.+++++|++..+.+++.+|..|+||||+|+..++.+++++|+++|
T Consensus        80 ~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            6666666655554 5666677777777777777777777776444566777777777777777777777777777665

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=197.54  Aligned_cols=152  Identities=28%  Similarity=0.384  Sum_probs=118.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      +|||+|+..|+.++++.|++++++ ++..|..|.||||+|+ .|+.+++++|+++|+++ +..+.+|.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-cCccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccccc
Confidence            677777777777777777777776 4566777777777664 67777788887777775 66677788888888888888


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       276 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      +.++.|++.+.+.... |..|.+|||+|+..++.+++++|+++++...+.+|.+|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~~l~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          80 DTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8888888777776654 77788888888888888888888888776668888888888888888888888888887

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.7e-24  Score=194.73  Aligned_cols=150  Identities=29%  Similarity=0.389  Sum_probs=131.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCC
Q 006802          229 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  308 (630)
Q Consensus       229 ~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~  308 (630)
                      .||||.|+..|+.++|++|+++|++..  .|..|.||||+|+..++.++++.++......... +..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            488999999999999999999888753  5788999999999999999998888877776544 7778889999999999


Q ss_pred             HHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 006802          309 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  383 (630)
Q Consensus       309 ~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L  383 (630)
                      .+.+++++..+.+. +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999998888765 7789999999999999999999999998 7999999999999999999999999999887

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=195.54  Aligned_cols=152  Identities=25%  Similarity=0.392  Sum_probs=101.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCH
Q 006802          230 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  309 (630)
Q Consensus       230 tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~  309 (630)
                      +.|+.|+..|+.++|+.|++.+....+..|..|.||||+|+ .|+.+++++|++.+.++... +..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccc-ccccccccccccccccc
Confidence            34666666666666666666533333555666666666654 35666666666666665543 55666677777777777


Q ss_pred             HHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          310 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       310 ~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      ++++.+++.+.++ +.+|.+|+||||+|+..|+.+++++|++  |++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccc-ccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            7777766666554 6677777777777777777777776663  667777777777777777777777777777654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.9e-24  Score=192.00  Aligned_cols=151  Identities=25%  Similarity=0.353  Sum_probs=110.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      +.|+.|+..|+.++++.|++.++..++..|..|.||||+|+ .|+.+++++|++.+.++ +..+..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            34777777777777777776655556666777777777765 46677777777777765 55666777777777777777


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       276 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      ++++.+++.+++++.. |..|.||||+|++.|+.+++++|+ .++++ +.+|.+|+||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~l~~~~~~n~~-~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccccccccc-cCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            7777777777776654 777888888888888888887666 34443 7778888888888888888888888876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.1e-23  Score=187.63  Aligned_cols=149  Identities=26%  Similarity=0.357  Sum_probs=73.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      ||||.|++.|+.++++.|++++++..  .|..|.||||+|+..++.++++.++...... ...+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            44444444444444444444444321  2444444444444444444444444443333 22333444455555555555


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHH
Q 006802          276 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  349 (630)
Q Consensus       276 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~L  349 (630)
                      +++++++..+.+.... |..|.||||+|+..|+.+++++|++.++++ +.+|.+|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~-~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccc-cccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            5555555554444332 455555555555555555555555555443 45555555555555555555555543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.2e-23  Score=213.24  Aligned_cols=184  Identities=21%  Similarity=0.236  Sum_probs=99.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhcCCccccccCCCCCCcHHHHHHHcCCH-------HHHHHHHhcCCCccccCCCCC
Q 006802          156 NQEGETPLYVAAESGHALIVEEMLQHMNLETASIPARNGYDSFHVAAKQGHL-------EVLKELLGEFPNLVMTTDLSC  228 (630)
Q Consensus       156 n~~g~TpLh~Aa~~g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh~A~~~g~~-------eiv~~Ll~~~~~~~~~~d~~g  228 (630)
                      |..|+||||+||..|+.++|++||++  +.+++..|..|+||||.|+..++.       ++++++..    .....|..|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~g  177 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMN  177 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhccccc
Confidence            45556666666666666666666654  344455555566666655554431       22222221    122334445


Q ss_pred             ChHHHHHHHcCC----HHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          229 STALHTAAAQGH----IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       229 ~tpL~~Aa~~g~----~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                      +||||+++..+.    ...+++.+                          ..++.+++..+..........+.++++.+.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  231 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYL--------------------------DILMGWIVKKQNRPIQSGTNEKESKPNDKN  231 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHH--------------------------HHHHHHHHHGGGCCEEEC------------
T ss_pred             CCHHHHHHHHhCccccHHHHHHHH--------------------------HHHHHHHHhcCCcchhcccccccchhHHHH
Confidence            555554443221    11111111                          124455666655555555666677777666


Q ss_pred             cCCCHHHHHHhhcC--CCCcccccCCCCChHHHHHHHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHH
Q 006802          305 KGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  372 (630)
Q Consensus       305 ~~g~~~iv~~Ll~~--~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~  372 (630)
                      .......+..+...  ....+|.+|.+|+||||+|++.|+.++|++|++ .|+|++.+|+.|.||||+|+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         232 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ----CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             hcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            55554444332211  012258899999999999999999999999999 89999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-21  Score=171.39  Aligned_cols=121  Identities=21%  Similarity=0.295  Sum_probs=108.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCC-hHHHHHHHh
Q 006802          262 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKK  340 (630)
Q Consensus       262 g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~-TpLh~A~~~  340 (630)
                      +.++||+|+..|+.++|++|++++++++.. |..|.||||.|+ .|+.+++++|++.++++ +.+|..|. ||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccc-cccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            467899999999999999999999888765 889999999775 68999999999998876 77777765 699999999


Q ss_pred             CcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 006802          341 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  386 (630)
Q Consensus       341 g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~  386 (630)
                      |+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|++.
T Consensus        80 g~~~~v~~Ll~-~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          80 GFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             TCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccc-cccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999 7999999999999999999999999999998753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=8.2e-22  Score=199.46  Aligned_cols=181  Identities=15%  Similarity=0.192  Sum_probs=121.2

Q ss_pred             cccCCCCC-CCCCChHHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHhCCH-------HHHHHHHh
Q 006802          109 RKKNKDSP-GKRGDLQLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAESGHA-------LIVEEMLQ  180 (630)
Q Consensus       109 ~~~~~~~~-~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~g~~-------eiv~~LL~  180 (630)
                      .+.++|.+ |.+|+||||+||..|+.++|+.||+.+.+      ++.+|..|+||||.||..++.       ++++++..
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad------~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~  168 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN------RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP  168 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh
Confidence            44566755 89999999999999999999999999765      678899999999999987752       44444433


Q ss_pred             cCCccccccCCCCCCcHHHHHHHcCC----HH--------HHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHH--
Q 006802          181 HMNLETASIPARNGYDSFHVAAKQGH----LE--------VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNF--  246 (630)
Q Consensus       181 ~~~~~~~~~~~~~g~t~Lh~A~~~g~----~e--------iv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~--  246 (630)
                           .....|..|+||||+++..+.    ..        ++.+++..+..........+.++++.+........+..  
T Consensus       169 -----~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (301)
T d1sw6a_         169 -----CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  243 (301)
T ss_dssp             -----GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             -----hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHh
Confidence                 345567889999999886654    22        33445555554444445555666666655444333332  


Q ss_pred             ---HHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhc
Q 006802          247 ---LLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  304 (630)
Q Consensus       247 ---LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  304 (630)
                         ++...   .+.+|.+|+||||+|++.|+.++|++|++.|+++... |..|.|||++|+
T Consensus       244 ~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~-n~~G~Tpl~~A~  300 (301)
T d1sw6a_         244 LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA-NKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC-CTTSCCGGGGTC
T ss_pred             hHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHcC
Confidence               22221   2556788888888888888888888888888887765 888888888886

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.2e-22  Score=172.11  Aligned_cols=120  Identities=23%  Similarity=0.322  Sum_probs=96.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCC-CchhhhhccC
Q 006802          228 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG-QTALHMAVKG  306 (630)
Q Consensus       228 g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~Aa~~  306 (630)
                      +.++||.|+..|+.+++++|+++|+++ +..+.+|.||||.|+ .|+.+++++|++++++++.. +..| .||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccccccc-ccccccccccccccc
Confidence            457888888888888888888888776 667788888888664 68888888888888887765 4444 4688888888


Q ss_pred             CCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcHHHHHHHhc
Q 006802          307 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  351 (630)
Q Consensus       307 g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  351 (630)
                      |+.+++++|++.+.++ +.+|.+|+||||+|+++|+.+++++|++
T Consensus        80 g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            8888888888887665 7888888899999988888888888875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=3.7e-22  Score=172.48  Aligned_cols=106  Identities=25%  Similarity=0.292  Sum_probs=87.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCc
Q 006802          263 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  342 (630)
Q Consensus       263 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~  342 (630)
                      .|||++|++.|+.++|++|++.+++++.. |..|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccc-ccccccccccccccccccccccccccccee-eecccccccchhhhhhcCc
Confidence            36888888888888888888887777654 778888888888888888888888887765 7888888888888888888


Q ss_pred             HHHHHHHhcccCCCcccccCCCCCHHHHH
Q 006802          343 TQIVRCLLSIEGIDVNSLNKAGESPLDVA  371 (630)
Q Consensus       343 ~~iv~~Ll~~~g~~in~~n~~G~TpL~~A  371 (630)
                      .+++++|++ .|+|++.+|..|.||||+|
T Consensus        81 ~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          81 VSCVKLLLS-KGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CHHHHHHHT-TCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhhc-ccccceeeCCCCCCHHHHH
Confidence            888888888 7888888888888888877

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.2e-21  Score=168.76  Aligned_cols=121  Identities=23%  Similarity=0.301  Sum_probs=98.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCchhhhhccCCCHHHHHHhhcCCCCcccccCCCCChHHHHHHHhCcH
Q 006802          264 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  343 (630)
Q Consensus       264 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A~~~g~~  343 (630)
                      ++|+.|+..|+.++|+.|++++++++.. |.+|+||||+|+..++.+++++|++.+.+. +.+|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccc-cccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            5678888888888888888888877654 778888888888888888888888877665 78888999999999999999


Q ss_pred             HHHHHHhcccCCCcccccC-CCCCHHHHH--HHcCCHHHHHHHHHcC
Q 006802          344 QIVRCLLSIEGIDVNSLNK-AGESPLDVA--EKLGNTELFSLLKEAG  387 (630)
Q Consensus       344 ~iv~~Ll~~~g~~in~~n~-~G~TpL~~A--~~~~~~~iv~~L~~~g  387 (630)
                      +++++|++ .|++++..+. .|+||++++  ...|+.+++++|++.+
T Consensus        81 ~~v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999998 7899887764 588888776  4567888999988764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.1e-20  Score=162.98  Aligned_cols=105  Identities=30%  Similarity=0.381  Sum_probs=66.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      |||++|+..|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|.+|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc-ccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCch
Confidence            566666666666666666665555 3445556666666666666666666666666665 45566666666666666666


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCchhhhh
Q 006802          276 EVVKALVSKDPSTGFRTDKKGQTALHMA  303 (630)
Q Consensus       276 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  303 (630)
                      +++++|++.|+++... |..|.||||+|
T Consensus        82 ~~v~~Ll~~Gad~~~~-d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADKTVK-GPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCSSSS-SSSTCCCCCTC
T ss_pred             hhhhhhhcccccceee-CCCCCCHHHHH
Confidence            6666666666666543 66666666666

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-19  Score=159.36  Aligned_cols=120  Identities=24%  Similarity=0.281  Sum_probs=64.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCchhhhhccCCCcHHHHHHHcCCH
Q 006802          196 DSFHVAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL  275 (630)
Q Consensus       196 t~Lh~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~~~~~~d~~g~tpLh~Aa~~g~~  275 (630)
                      ++|+.|+..|+.+++++|++++.+ ++..|..|.||||+|+..|+.+++++|++.|++. +..|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-cccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhHH
Confidence            345555555555555555555554 3344555555555555555555555555555554 44555555666666666666


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCchhhh--hccCCCHHHHHHhhc
Q 006802          276 EVVKALVSKDPSTGFRTDKKGQTALHM--AVKGQNEDIVLELIR  317 (630)
Q Consensus       276 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~--Aa~~g~~~iv~~Ll~  317 (630)
                      +++++|+++++++....+..|+||+++  |++.|+.+++++|+.
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            666666655555544333345554333  334455555555543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=4.1e-19  Score=160.32  Aligned_cols=123  Identities=24%  Similarity=0.320  Sum_probs=101.3

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcc-----cCCCCCchhhhhcc---CCCHHHHHHhhcCCCCcccccCCCCChHHHHH
Q 006802          266 LHSAARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVK---GQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  337 (630)
Q Consensus       266 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~Aa~---~g~~~iv~~Ll~~~~~~~n~~d~~G~TpLh~A  337 (630)
                      |..|++.++...+..++..+.+....     .+..|+||||+|++   .+..+++++|++.++++ +.+|.+|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccccc
Confidence            44556666666666666665543322     35678899999986   46788999999988775 88999999999999


Q ss_pred             HHhCcHHHHHHHhcccCCCcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Q 006802          338 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  390 (630)
Q Consensus       338 ~~~g~~~iv~~Ll~~~g~~in~~n~~G~TpL~~A~~~~~~~iv~~L~~~ga~~  390 (630)
                      +..|+.+++++|++ .|++++.+|..|+||||+|++.|+.+++++|+++++..
T Consensus        89 ~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          89 CLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccc-cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999998 89999999999999999999999999999999988754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.1e-18  Score=157.33  Aligned_cols=128  Identities=20%  Similarity=0.171  Sum_probs=90.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhcChhhhhHHhhcCCCCCCcHHHHHHHh---CCHHHHHHHHhcCCccccccCCCCCCcHHH
Q 006802          123 QLHLAARAGNLSRVMEILQSCDANEAKDLLSKKNQEGETPLYVAAES---GHALIVEEMLQHMNLETASIPARNGYDSFH  199 (630)
Q Consensus       123 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~l~~~n~~g~TpLh~Aa~~---g~~eiv~~LL~~~~~~~~~~~~~~g~t~Lh  199 (630)
                      .|+.|++.+++..+..++..+.+...+......+..|+||||+|+..   |+.++|++|+++  +.+++..|.+|.||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhccccc
Confidence            46678889999988888887654322222334466778888888864   567778888876  3456667777777777


Q ss_pred             HHHHcCCHHHHHHHHhcCCCccccCCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 006802          200 VAAKQGHLEVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN  253 (630)
Q Consensus       200 ~A~~~g~~eiv~~Ll~~~~~~~~~~d~~g~tpL~~Aa~~g~~e~v~~LL~~~~~  253 (630)
                      +|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.+..
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            777777777777777777763 55677777777777777777777777776543