Citrus Sinensis ID: 006807

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
MTGGGGGESPLTPACNGGEFLLSLLQKPQQHPQAPPHQTPPQQPSLPNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLRLGKQHYGSTPPPGFSNKARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIEESLLDLRREGRERHLGLDKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTIR
ccccccccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHcccHHHcccHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccEEEEcccccccHHHHHHHHHHHHHccccccEEEcccccccEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEccccccc
ccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccHHHcccccccHHHcEEEEccccccHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHHcccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEcEEcEcEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHHccccccccccccccEEEcccHHHcccccccccccHHHHHHHHHHHHHHHccccccEEEEEcccccc
mtgggggespltpacnggEFLLSLLqkpqqhpqapphqtppqqpslpndpavaavgptinfqpqwpsngcdlpptwprtplplnflgfpqnpwasssteNQQQRLLCEDfgrlgfsnaNYAAIHNLiqqpnhqqqqnlrfgsfqvqpdsllnlnhLENLKYnldrnsqfdqprassisnpnsflhrnlensrehdlrlgkqhygstpppgfsnkarvggsgnsrrgfeHNVDMINRFTssaveggngvgltrqldrpgppsgsnlhsvsaLDIEESLLDLRREGRERhlgldkrrengpgysqggddmddfGEDLVdsllpddeselkndtherndkkhrnsrdkeirsdnrGKRLLSQRMRNLKWQIECRAdigrlnapflAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGscansfgvsksdiDVCLAindseinkSEVLLKLADILQSDNLQNVQALTRARvpivklmdpvtgiscdiCINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKsrgvnvtyQGTLSSYAYVLMCIHFLQQrrpailpclqgmektysvtvddiecayfdqvdklhgfgsrnkeSIGRLVWAFFNYWayghdyasnVISVRTGSTIR
mtgggggespltpACNGGEFLLSLLQKPQQHPQAPPHQTPPQQPSLPNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFdqprassisnpnsFLHRNLENSREHDLRLGKQHygstpppgfsnkARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGppsgsnlhsvsaLDIEESLLDLRREGRerhlgldkrrengpgysqggddmDDFGEDLVDSLlpddeselkndtherndkkhrnsrdkeirsdnrgkrllsqRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHdyasnvisvrtgstir
MTGGGGGESPLTPACNGGEFLLSLLqkpqqhpqapphqtppqqpSLPNDPAVAAVGPTINFQPQWPSNGCDlpptwprtplplNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAihnliqqpnhqqqqnlRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLRLGKQHYGSTPPPGFSNKARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIeeslldlrregrerhlgldKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAeeekakqkklltlleklvckeWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTIR
******************************************************VGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPW**********RLLCEDFGRLGFSNANYAAIHNLIQQ********LRFGSFQVQPDSLLNLNHLENLKY*******************************************************************************************************************************************************************************************************MRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISV*******
***************NGGEFLLS*****************************AAVGPTINF******************PLPLNFL*******************************************************************************************************************************************************************************************************************************************************************************************CRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGST**
MTGGGGGESPLTPACNGGEFLLSLLQK*******************PNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPW********QQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLRLGKQHYGSTPPPGFSNKARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIEESLLDLRREGRERHLGLDKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDE************************SDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTIR
**********LTPACNGGEFLLSLLQK*****************SLPNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQ**********************************************************************************LDRPGPPSGSNL**VSALDIEESLLDL********************************************************************************MRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTG**I*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTGGGGGESPLTPACNGGEFLLSLLQKPQQHPQAPPHQTPPQQPSLPNDPAVAAVGPTINFQPQWPSNGCDLPPTWPRTPLPLNFLGFPQNPWASSSTENQQQRLLCEDFGRLGFSNANYAAIHNLIQQPNHQQQQNLRFGSFQVQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLRLGKQHYGSTPPPGFSNKARVGGSGNSRRGFEHNVDMINRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIEESLLDLRREGRERHLGLDKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query630 2.2.26 [Sep-21-2011]
O74326 478 Poly(A) RNA polymerase ci yes no 0.373 0.491 0.361 6e-39
Q5VYS8 1495 Terminal uridylyltransfer yes no 0.401 0.169 0.340 2e-37
Q9UT49 578 Poly(A) RNA polymerase ci no no 0.404 0.441 0.328 7e-37
B2RX14 1644 Terminal uridylyltransfer yes no 0.379 0.145 0.359 2e-36
Q5TAX3 1644 Terminal uridylyltransfer no no 0.379 0.145 0.359 2e-36
Q5BLK4 1491 Terminal uridylyltransfer no no 0.4 0.169 0.332 1e-35
Q6DFA8509 Poly(A) RNA polymerase GL N/A no 0.355 0.440 0.335 8e-34
Q0VFA3528 Poly(A) RNA polymerase GL no no 0.355 0.424 0.335 1e-32
Q641A1509 Poly(A) RNA polymerase GL N/A no 0.339 0.420 0.362 1e-32
Q503I9489 Poly(A) RNA polymerase GL no no 0.396 0.511 0.329 1e-31
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid11 PE=3 SV=1 Back     alignment and function desciption
 Score =  162 bits (411), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 91/252 (36%), Positives = 151/252 (59%), Gaps = 17/252 (6%)

Query: 384 IYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARL--YLYGSCANSFGVSKSDIDVCLAI 441
           +Y  L P+ EE +++++ +  L  ++  E  DA+L  +++GS  N+  + +SD+DVC+  
Sbjct: 54  LYMRLKPSNEEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNLAIQQSDVDVCIIT 113

Query: 442 NDSEINKSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVN 501
           N S+   S    +LA +L S  ++ +  ++RARVPIVK+ DP   I CD+ INN +A +N
Sbjct: 114 NGSKYLNSTC--QLAQLLYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDLNINNDVAKIN 171

Query: 502 TKLLRDYAQIDVRLQQLAFIVKHWAKSRGV-NVTYQGTLSSYAYVLMCIHFLQQRRPAIL 560
           TK+LR +  ID R++ L  I+K+WAK R + +    GT++SY    M ++FLQ R P IL
Sbjct: 172 TKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQTRNPPIL 231

Query: 561 PCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSR---NKESIGRLVWAFFNYWAYGHDYA 617
           P +  +     ++ DD +      VD + GF  +   NK S+GRL+  FF Y+ +  +Y 
Sbjct: 232 PAMLDL-----MSNDDNKMF----VDDIVGFKEKATLNKTSLGRLLIDFFYYYGFSFNYL 282

Query: 618 SNVISVRTGSTI 629
            +V+SVR+G+ +
Sbjct: 283 DSVVSVRSGTVL 294

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1 Back     alignment and function description
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid13 PE=1 SV=1 Back     alignment and function description
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2 Back     alignment and function description
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3 Back     alignment and function description
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3 Back     alignment and function description
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1 SV=1 Back     alignment and function description
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2 SV=1 Back     alignment and function description
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1 SV=1 Back     alignment and function description
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
317106636 748 JHL05D22.13 [Jatropha curcas] 0.963 0.811 0.585 0.0
147782453720 hypothetical protein VITISV_006352 [Viti 0.923 0.808 0.556 1e-173
18406841 764 nucleotidyltransferase-like protein [Ara 0.973 0.802 0.522 1e-168
297824611 757 hypothetical protein ARALYDRAFT_483698 [ 0.976 0.812 0.510 1e-165
255541382696 poly(A) polymerase cid, putative [Ricinu 0.880 0.797 0.544 1e-164
296089114 989 unnamed protein product [Vitis vinifera] 0.642 0.409 0.665 1e-156
356522696 732 PREDICTED: uncharacterized protein LOC10 0.957 0.823 0.511 1e-149
449454502 763 PREDICTED: uncharacterized protein LOC10 0.957 0.790 0.479 1e-147
356506330 731 PREDICTED: uncharacterized protein LOC10 0.949 0.818 0.502 1e-146
359489515679 PREDICTED: uncharacterized protein LOC10 0.858 0.796 0.5 1e-143
>gi|317106636|dbj|BAJ53142.1| JHL05D22.13 [Jatropha curcas] Back     alignment and taxonomy information
 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/700 (58%), Positives = 473/700 (67%), Gaps = 93/700 (13%)

Query: 1   MTGGGGGESPLTPACNGGEFLLSLLQKPQ---QHPQAPPH-QTPPQQP------------ 44
           M GGG    P+ PA NGGEFLLSLLQ+P    Q P  PPH Q P   P            
Sbjct: 1   MNGGGADAPPMQPAVNGGEFLLSLLQRPNHQLQTPAPPPHSQLPIPIPITPQQYQQQQQQ 60

Query: 45  ----SLPNDPAVAAVGPTINF-QPQWPSNGCD-LPPTWPR----TPLPLNFLGFPQNPW- 93
               SL  DPAVAAVGP++ F QP W SNG D L P WP      PL   FLGFPQN W 
Sbjct: 61  QQQQSLALDPAVAAVGPSLPFSQPVWQSNGRDVLTPPWPHNLSAAPLLPGFLGFPQNHWP 120

Query: 94  ------ASSSTENQQQRLLCEDFGRLGFSNANYAA---IHNLIQQPNHQQQQNLRFGSFQ 144
                 A+   +  QQ +L +D   LGFS A+  A   IHN +QQ   Q +Q L+FGSF+
Sbjct: 121 SPANHLAAGQFQGNQQGVLGDDLQILGFSGADVRANNTIHNRVQQ-KQQLEQKLQFGSFR 179

Query: 145 VQPDSLLNLNHLENLKYNLDRNSQFDQPRASSISNPNSFLHRNLENSREHDLR------- 197
                + N+  L N+   L+   + +   A+   N      +     R  DLR       
Sbjct: 180 ---SDIQNVEALLNVNSKLNAAKELEVRLATRNLNGLESDQKFDSQLRTFDLREQDRSGG 236

Query: 198 -LGKQHYGS--------TPPPGFSNKARVGGSGN---SRRGFEHNV--------DMINR- 236
              KQ +G          PPPGFSNK R GG+ +    RR  ++NV        ++ NR 
Sbjct: 237 GWRKQPHGGNYRPQETRMPPPGFSNKPRGGGNWDYVSRRRELDYNVNKEKGNQGELSNRN 296

Query: 237 --FTSSAVEGGNG-----VGLTRQLDRPGPPSGSNLHSVSALDIEESLLDLRREGRERHL 289
             F+S      +G     +GLT QLDRPGPP+GSNL+SVSA D+E S+L++  E  E   
Sbjct: 297 ALFSSEDKIPRDGDRSRDLGLTGQLDRPGPPAGSNLYSVSAADVELSMLNVEAEVVED-- 354

Query: 290 GLDKRRENGPGYSQGGDDMDDFGEDLVDSLLPDDESELKNDTHERNDKKHRNSRDKEIRS 349
           G D+ RE           +D+ GE+LVDSLL + ES+ KND      K++R+SR+KE RS
Sbjct: 355 GKDEGRE-----------LDEAGEELVDSLLLEGESDGKNDK-----KQNRHSREKESRS 398

Query: 350 DNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLV 409
           DNRG+R LSQRMR LK Q+ECR DI RLNAPFLAIYESL+P EEEKAKQK+LL+LLEKLV
Sbjct: 399 DNRGQRTLSQRMRMLKRQMECRRDIDRLNAPFLAIYESLVPPEEEKAKQKQLLSLLEKLV 458

Query: 410 CKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQA 469
            KEWP ARLYLYGSCANSFGV KSDIDVCLAI +++INKSEVLLKLADILQSDNLQNVQA
Sbjct: 459 NKEWPQARLYLYGSCANSFGVLKSDIDVCLAIQNADINKSEVLLKLADILQSDNLQNVQA 518

Query: 470 LTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKSR 529
           LTRARVPIVKLMDPVTGISCDICINN+LAVVNTKLL DYAQIDVRL+QLAFIVKHWAKSR
Sbjct: 519 LTRARVPIVKLMDPVTGISCDICINNVLAVVNTKLLWDYAQIDVRLRQLAFIVKHWAKSR 578

Query: 530 GVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLH 589
           GVN TY GTLSSYAYVLMCIHFLQQRRPAILPCLQ ME TYSV VDDI+CAYFDQV+KL 
Sbjct: 579 GVNETYHGTLSSYAYVLMCIHFLQQRRPAILPCLQEMEATYSVAVDDIQCAYFDQVEKLR 638

Query: 590 GFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
           GFGSRNKE+I +LVWAFFNYWAY HDYA+ VIS+RTGS I
Sbjct: 639 GFGSRNKETIAQLVWAFFNYWAYRHDYANAVISIRTGSII 678

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147782453|emb|CAN77386.1| hypothetical protein VITISV_006352 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18406841|ref|NP_566048.1| nucleotidyltransferase-like protein [Arabidopsis thaliana] gi|13430538|gb|AAK25891.1|AF360181_1 unknown protein [Arabidopsis thaliana] gi|14532746|gb|AAK64074.1| unknown protein [Arabidopsis thaliana] gi|20197056|gb|AAC06161.2| expressed protein [Arabidopsis thaliana] gi|330255483|gb|AEC10577.1| nucleotidyltransferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297824611|ref|XP_002880188.1| hypothetical protein ARALYDRAFT_483698 [Arabidopsis lyrata subsp. lyrata] gi|297326027|gb|EFH56447.1| hypothetical protein ARALYDRAFT_483698 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255541382|ref|XP_002511755.1| poly(A) polymerase cid, putative [Ricinus communis] gi|223548935|gb|EEF50424.1| poly(A) polymerase cid, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296089114|emb|CBI38817.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356522696|ref|XP_003529982.1| PREDICTED: uncharacterized protein LOC100812787 [Glycine max] Back     alignment and taxonomy information
>gi|449454502|ref|XP_004144993.1| PREDICTED: uncharacterized protein LOC101204551 [Cucumis sativus] gi|449521808|ref|XP_004167921.1| PREDICTED: uncharacterized LOC101204551 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356506330|ref|XP_003521938.1| PREDICTED: uncharacterized protein LOC100818029 [Glycine max] Back     alignment and taxonomy information
>gi|359489515|ref|XP_002272342.2| PREDICTED: uncharacterized protein LOC100267790 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
TAIR|locus:2043669764 AT2G45620 [Arabidopsis thalian 0.646 0.532 0.592 5.7e-139
DICTYBASE|DDB_G02784251090 DDB_G0278425 [Dictyostelium di 0.339 0.196 0.451 1.2e-53
UNIPROTKB|Q2KEW4 1474 MGCH7_ch7g922 "Putative unchar 0.339 0.145 0.390 1e-40
POMBASE|SPBC1685.06 478 cid11 "poly(A) polymerase Cid1 0.323 0.426 0.384 1.9e-34
DICTYBASE|DDB_G0281431 920 DDB_G0281431 "Terminal uridyly 0.284 0.194 0.375 8.1e-33
UNIPROTKB|Q5VYS8 1495 ZCCHC6 "Terminal uridylyltrans 0.344 0.145 0.368 4.8e-31
UNIPROTKB|E1BAR2 1498 ZCCHC6 "Uncharacterized protei 0.344 0.144 0.364 1.3e-30
POMBASE|SPAC821.04c 578 cid13 "poly(A) polymerase Cid1 0.326 0.356 0.360 2.4e-30
UNIPROTKB|Q641A1509 papd4-a "Poly(A) RNA polymeras 0.339 0.420 0.352 1e-29
UNIPROTKB|E2RM29 1497 ZCCHC6 "Uncharacterized protei 0.344 0.144 0.364 1.4e-29
TAIR|locus:2043669 AT2G45620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1218 (433.8 bits), Expect = 5.7e-139, Sum P(2) = 5.7e-139
 Identities = 246/415 (59%), Positives = 290/415 (69%)

Query:   221 GNSRRGFEHNVDM---INRFTSSAVEGGNGVGLTRQLDRPGPPSGSNLHSVSALDIXXXX 277
             G   + +  +VD     NR    +++  +   L++Q+D PGPP G++LHSVSA D     
Sbjct:   274 GEHSKVWNQSVDFSAEANRLRGLSIQNESKFNLSQQIDHPGPPKGASLHSVSAADAADSF 333

Query:   278 XXXXXXXXXXXXXXXKRRENGPGYSQGG---DDMDDFGEDLVDSLLPDDESELKNDTHER 334
                            +  +      +G    D+++DFGED+V SLL +DE+  K+    +
Sbjct:   334 SMLNKEARRGGERREELGQLSKAKREGNANSDEIEDFGEDIVKSLLLEDETGEKDANDGK 393

Query:   335 NDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESLIPAXXX 394
              D K   SR+KE R DNRG+RLL Q+ R +K  + CR DI R +A F+AIY+SLIPA   
Sbjct:   394 KDSK--TSREKESRVDNRGQRLLGQKARMVKMYMACRNDIHRYDATFIAIYKSLIPAEEE 451

Query:   395 XXXXXXXXXXXXXXXXXXWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLK 454
                               WP A+LYLYGSCANSFG  KSDIDVCLAI   +INKSE+LLK
Sbjct:   452 LEKQRQLMAHLENLVAKEWPHAKLYLYGSCANSFGFPKSDIDVCLAIEGDDINKSEMLLK 511

Query:   455 LADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVR 514
             LA+IL+SDNLQNVQALTRARVPIVKLMDPVTGISCDICINN+LAVVNTKLLRDYAQIDVR
Sbjct:   512 LAEILESDNLQNVQALTRARVPIVKLMDPVTGISCDICINNVLAVVNTKLLRDYAQIDVR 571

Query:   515 LQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTV 574
             L+QLAFIVKHWAKSR VN TYQGTLSSYAYVLMCIHFLQQRRP ILPCLQ ME TYSV V
Sbjct:   572 LRQLAFIVKHWAKSRRVNETYQGTLSSYAYVLMCIHFLQQRRPPILPCLQEMEPTYSVRV 631

Query:   575 DDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
             D+I C YFD VD+L  FGS N+E+I  LVW FFNYWAY HDYA NV+SVRTGS +
Sbjct:   632 DNIRCTYFDNVDRLRNFGSNNRETIAELVWGFFNYWAYAHDYAYNVVSVRTGSIL 686
GO:0005634 "nucleus" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
DICTYBASE|DDB_G0278425 DDB_G0278425 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KEW4 MGCH7_ch7g922 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPBC1685.06 cid11 "poly(A) polymerase Cid11 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281431 DDB_G0281431 "Terminal uridylyltransferase 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VYS8 ZCCHC6 "Terminal uridylyltransferase 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BAR2 ZCCHC6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
POMBASE|SPAC821.04c cid13 "poly(A) polymerase Cid13" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q641A1 papd4-a "Poly(A) RNA polymerase GLD2-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E2RM29 ZCCHC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026303001
SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (720 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
COG5260 482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 3e-45
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 1e-37
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 3e-06
pfam0382859 pfam03828, PAP_assoc, Cid1 family poly A polymeras 8e-06
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 1e-05
PTZ00418 593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 3e-05
pfam02948174 pfam02948, Amelogenin, Amelogenin 1e-04
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 2e-04
pfam09770804 pfam09770, PAT1, Topoisomerase II-associated prote 0.001
smart00818165 smart00818, Amelogenin, Amelogenins, cell adhesion 0.004
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  167 bits (424), Expect = 3e-45
 Identities = 87/302 (28%), Positives = 140/302 (46%), Gaps = 25/302 (8%)

Query: 329 NDTHERNDKKHRNSRDKEIRSDNRGKRLLSQRMRNLKWQIECRADIGRLNAPFLAIYESL 388
           N + E  ++       KE R  +  K  + + +  L        +   L +  L  Y+ +
Sbjct: 12  NSSSE--EEFETIMEQKERRPLDAKKVSIQELL-ELSIDSVFNEESDELTSELLEFYDYI 68

Query: 389 IPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDS-EIN 447
            P++EE  ++K LL  L  L+ KE+PDA L ++GS      + KSDID+C+  +      
Sbjct: 69  APSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKE 128

Query: 448 KSEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRD 507
                   + + + +  + V  ++ ARVPI+KL+DP +G+ CDI  NN   +VN KL+R 
Sbjct: 129 TRNAGSLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRS 188

Query: 508 YAQIDVRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGME 567
           Y + D RL+ L  I+KHW K R +N    GTLSSY    M + FLQ   P +        
Sbjct: 189 YLKEDPRLRPLVLIIKHWLKRRALNDVATGTLSSYTISCMVLSFLQMHPPFLF------- 241

Query: 568 KTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGS 627
                         FD         ++N +++G L   FF  +    +Y+  V+S+ +G 
Sbjct: 242 --------------FDNGLLSPLKYNKNIDNLGVLFDDFFELYGKSFNYSLVVLSINSGD 287

Query: 628 TI 629
             
Sbjct: 288 FY 289

Length = 482
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information
>gnl|CDD|217750 pfam03828, PAP_assoc, Cid1 family poly A polymerase Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information
>gnl|CDD|217298 pfam02948, Amelogenin, Amelogenin Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 630
COG5260 482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
KOG1906 514 consensus DNA polymerase sigma [Replication, recom 100.0
KOG2277 596 consensus S-M checkpoint control protein CID1 and 99.96
PTZ00418 593 Poly(A) polymerase; Provisional 99.94
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.89
KOG2245 562 consensus Poly(A) polymerase and related nucleotid 99.89
COG5186 552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.76
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.52
TIGR03671 408 cca_archaeal CCA-adding enzyme. 99.51
PRK13300 447 tRNA CCA-pyrophosphorylase; Provisional 99.49
COG1746 443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.36
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 98.46
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 98.07
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.93
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.91
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.66
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 97.02
COG1708128 Predicted nucleotidyltransferases [General functio 96.95
COG166997 Predicted nucleotidyltransferases [General functio 96.95
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 96.9
PRK13746262 aminoglycoside resistance protein; Provisional 95.69
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 95.44
PF14091152 DUF4269: Domain of unknown function (DUF4269) 94.82
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 94.81
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 94.32
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 93.82
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 91.59
KOG3793362 consensus Transcription factor NFAT, subunit NF45 89.46
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 87.49
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 87.38
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 82.86
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 80.82
smart00483334 POLXc DNA polymerase X family. includes vertebrate 80.44
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 80.05
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-40  Score=356.22  Aligned_cols=236  Identities=33%  Similarity=0.585  Sum_probs=203.9

Q ss_pred             cchhhhcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCC-ccch
Q 006807          370 CRADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDS-EINK  448 (630)
Q Consensus       370 c~~dId~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~-~i~k  448 (630)
                      ...+.+.|+.+|.++|.+++|+.+|+++|.+++++|+.++.+.||++.+++|||+.+|++++.||||+||..+.. ..+.
T Consensus        50 ~~~~~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~~et  129 (482)
T COG5260          50 FNEESDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKET  129 (482)
T ss_pred             hhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhCCccceeEecccccccccCcccccEEEecCCcccccc
Confidence            356778899999999999999999999999999999999999999999999999999999999999999987542 2222


Q ss_pred             HHHHHHHHHHHhhCCCcceEEeeeeeeceEEEecccCCeeeeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHHHHHh
Q 006807          449 SEVLLKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKS  528 (630)
Q Consensus       449 ~eiL~~LakiLr~~~~~nV~~I~~ARVPIIKf~d~~tgI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~WAK~  528 (630)
                      ......+.-++.+..+..++++.+||||||||+++.+++.|||+|++..|+.+|++++.|...+|++|+|+++||||+++
T Consensus       130 ~~~~~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~~~~~~~~P~lrpLvliIKhwl~~  209 (482)
T COG5260         130 RNAGSLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRSYLKEDPRLRPLVLIIKHWLKR  209 (482)
T ss_pred             ccHHHHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence            22233334445567788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCCChHHHHHHHHHHhhhcCCCcccccccccccccceecCcccccccccccccCCCCCCcCCHHHHHHHHHH
Q 006807          529 RGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFN  608 (630)
Q Consensus       529 rGLnd~~~GgLSSYaLiLMVI~FLQ~~~PpILP~Lqel~~~~~~~Vd~~~~~f~d~~e~L~~~~s~N~~SLgeLLl~FF~  608 (630)
                      |.|++++.|||+||++++||+.|||++.|  .+..+..           .      +.++  +...+..++|.||.+||+
T Consensus       210 R~ln~~~~GtL~sy~i~cmV~sfLq~~~~--~~~~~~~-----------~------~~~l--~~~~~~~~lgvLf~dFf~  268 (482)
T COG5260         210 RALNDVATGTLSSYTISCMVLSFLQMHPP--FLFFDNG-----------L------LSPL--KYNKNIDNLGVLFDDFFE  268 (482)
T ss_pred             HhhcccccCcchhhhhHHHHHHHHHhCCc--ccccccc-----------c------cchh--hccccccccchHHHHHHH
Confidence            99999999999999999999999999843  1111111           0      0111  234567899999999999


Q ss_pred             HHhcCCCCCCceEEecCC
Q 006807          609 YWAYGHDYASNVISVRTG  626 (630)
Q Consensus       609 yYs~~FDy~~~VISIR~G  626 (630)
                      ||+..|+|..-+|+|+.|
T Consensus       269 ~yG~~f~Y~~~~~si~~g  286 (482)
T COG5260         269 LYGKSFNYSLVVLSINSG  286 (482)
T ss_pred             HhccccChhheEEEecCC
Confidence            999999999999999999

>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>smart00483 POLXc DNA polymerase X family Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
4e7x_A 405 Structural Basis For The Activity Of A Cytoplasmic 3e-30
4fhx_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 4e-30
4fh3_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 4e-30
4ep7_A340 Functional Implications From The Cid1 Poly(U) Polym 6e-30
3pq1_A464 Crystal Structure Of Human Mitochondrial Poly(A) Po 8e-14
3nyb_A323 Structure And Function Of The Polymerase Core Of Tr 3e-13
3hj1_A 387 Minor Editosome-Associated Tutase 1 With Bound Utp 1e-10
3hiy_B 384 Minor Editosome-Associated Tutase 1 With Bound Utp 2e-09
2ikf_A353 Terminal Uridylyl Transferase 4 From Trypanosoma Br 5e-05
>pdb|4E7X|A Chain A, Structural Basis For The Activity Of A Cytoplasmic Rna Terminal U- Transferase Length = 405 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 10/217 (4%)
Query: 414 PDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSEVLLKLADILQSDNLQNVQALTRA 473
           PDA L  +GS  +   +  SD+D+C+ + DS +    + L+  + L ++  +  + L RA
Sbjct: 81  PDAELVAFGSLESGLALKNSDMDLCVLM-DSRVQSDTIALQFYEELIAEGFEG-KFLQRA 138
Query: 474 RVPIVKLMDPV-----TGISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHWAKS 528
           R+PI+KL             CDI  NN LA+ NT LL  Y ++D RL+ +  +VKHWAK 
Sbjct: 139 RIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKR 198
Query: 529 RGVNVTYQGTLSSYAYVLMCIHFL-QQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDK 587
           + +N  Y GTLSSY YVLM +++L    +P + P L          VD  +  + D+++ 
Sbjct: 199 KQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLED 258
Query: 588 LHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVR 624
           +    S+N  S+G L+  FF ++AY  +    V++ R
Sbjct: 259 IP--PSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFR 293
>pdb|4FHX|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity - H336n Mutant Bound To Mgatp Length = 349 Back     alignment and structure
>pdb|4FH3|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity Length = 349 Back     alignment and structure
>pdb|4EP7|A Chain A, Functional Implications From The Cid1 Poly(U) Polymerase Crystal Structure Length = 340 Back     alignment and structure
>pdb|3PQ1|A Chain A, Crystal Structure Of Human Mitochondrial Poly(A) Polymerase (Papd1) Length = 464 Back     alignment and structure
>pdb|3NYB|A Chain A, Structure And Function Of The Polymerase Core Of Tramp, A Rna Surveillance Complex Length = 323 Back     alignment and structure
>pdb|3HJ1|A Chain A, Minor Editosome-Associated Tutase 1 With Bound Utp Length = 387 Back     alignment and structure
>pdb|3HIY|B Chain B, Minor Editosome-Associated Tutase 1 With Bound Utp And Mg Length = 384 Back     alignment and structure
>pdb|2IKF|A Chain A, Terminal Uridylyl Transferase 4 From Trypanosoma Brucei With Bound Utp Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
3hj4_A 384 Minor editosome-associated tutase; nucleotidyltran 4e-68
4e8f_A 405 Poly(A) RNA polymerase protein CID1; beta polymera 8e-68
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 5e-67
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 3e-64
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 2e-58
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 6e-58
2b4v_A 468 RNA editing complex protein MP57; tbret2, TBMP57, 1e-05
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 2e-54
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 5e-22
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 3e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
4e8f_A 405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
3hj4_A 384 Minor editosome-associated tutase; nucleotidyltran 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
1q79_A 514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 100.0
1r89_A 437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.28
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.05
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 98.09
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.79
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.61
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 97.22
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 96.93
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 96.16
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 95.79
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 95.72
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 92.18
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 92.04
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 90.62
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 86.68
1jms_A381 Terminal deoxynucleotidyltransferase; polymerase; 82.8
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
Probab=100.00  E-value=1.1e-51  Score=444.45  Aligned_cols=255  Identities=30%  Similarity=0.525  Sum_probs=233.9

Q ss_pred             chhhhcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecceecCCCCCCCCceEEeecCCCccchHH
Q 006807          371 RADIGRLNAPFLAIYESLIPAEEEKAKQKKLLTLLEKLVCKEWPDARLYLYGSCANSFGVSKSDIDVCLAINDSEINKSE  450 (630)
Q Consensus       371 ~~dId~L~~ell~~~~~l~PT~EE~~~Reqvl~~Le~iI~~~~P~a~V~~FGS~atGl~lp~SDIDI~L~~~~~~i~k~e  450 (630)
                      ..++++|+.+|.++|+++.||++|.+.|++++.+|+++|++.||+++|++|||+++|+++++|||||||..+... ...+
T Consensus        38 ~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~-~~~~  116 (405)
T 4e8f_A           38 PNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRV-QSDT  116 (405)
T ss_dssp             CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC----CTT
T ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCC-CHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999999999886532 2234


Q ss_pred             HHHHHHHHHhhCCCcceEEeeeeeeceEEEe-cccC----CeeeeEEeeccchhhchHHHHHHhhcChhhHHHHHHHHHH
Q 006807          451 VLLKLADILQSDNLQNVQALTRARVPIVKLM-DPVT----GISCDICINNLLAVVNTKLLRDYAQIDVRLQQLAFIVKHW  525 (630)
Q Consensus       451 iL~~LakiLr~~~~~nV~~I~~ARVPIIKf~-d~~t----gI~~DISfnN~~Gv~nT~LL~~y~~~dPrlR~LvllVK~W  525 (630)
                      ++.++++.|++. ..++..|.+||||||||+ |+.+    |++|||||+|..|+.+|.+|+.|++.+|++|+|+++||+|
T Consensus       117 ~l~~l~~~L~~~-~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~~~p~~r~Lv~~lK~w  195 (405)
T 4e8f_A          117 IALQFYEELIAE-GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHW  195 (405)
T ss_dssp             HHHHHHHHHHHT-TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            788899999877 567899999999999999 8888    9999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcccCCCChHHHHHHHHHHh-hhcCCCcccccccccccccceecCcccccccccccccCCCCCCcCCHHHHHH
Q 006807          526 AKSRGVNVTYQGTLSSYAYVLMCIHFL-QQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFGSRNKESIGRLVW  604 (630)
Q Consensus       526 AK~rGLnd~~~GgLSSYaLiLMVI~FL-Q~~~PpILP~Lqel~~~~~~~Vd~~~~~f~d~~e~L~~~~s~N~~SLgeLLl  604 (630)
                      |+++||++++.||||||+|++|||+|| |...||+||+||++.......+++|+|.|.+++..  .|+..|..++|+||+
T Consensus       196 ak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~--~~~~~n~~slg~LL~  273 (405)
T 4e8f_A          196 AKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLED--IPPSQNYSSLGSLLH  273 (405)
T ss_dssp             HHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGG--SCCCSCCCCHHHHHH
T ss_pred             HHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhh--hccccccccHHHHHH
Confidence            999999999999999999999999999 77889999999999887778899999999887543  366778999999999


Q ss_pred             HHHHHHhcCCCCCCceEEec-CCCcC
Q 006807          605 AFFNYWAYGHDYASNVISVR-TGSTI  629 (630)
Q Consensus       605 ~FF~yYs~~FDy~~~VISIR-~G~il  629 (630)
                      +||+||+.+|||.+.+|||| .|+++
T Consensus       274 ~FF~yY~~~Fd~~~~vIsir~~g~~~  299 (405)
T 4e8f_A          274 GFFRFYAYKFEPREKVVTFRRPDGYL  299 (405)
T ss_dssp             HHHHHHHHTCCTTTBEECSSSTTCCC
T ss_pred             HHHHHHhcccCCCCcEEEEecCCccc
Confidence            99999998899999999999 77665
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 630
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 4e-24
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 2e-18
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 3e-18
d1no5a_100 d.218.1.5 (A:) Hypothetical protein HI0073 {Haemop 4e-05
d1ylqa190 d.218.1.5 (A:1-90) Putative nucleotidyltransferase 5e-04
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

 Score = 97.6 bits (242), Expect = 4e-24
 Identities = 25/116 (21%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 514 RLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVT 573
             +  A  VK W K+  V       L+SYA  +M I++L   R  +              
Sbjct: 3   AARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPW--------- 53

Query: 574 VDDIECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI 629
                 A+  +          +   +GRL+  FF ++A+  DY   V+S+      
Sbjct: 54  -SLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRS 108
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Length = 100 Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 90 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.86
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.77
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.73
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.01
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.0
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 98.59
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.48
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.4
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 98.07
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 97.29
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 96.82
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 96.0
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 95.97
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 95.27
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 95.23
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 93.91
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 88.1
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 81.51
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.86  E-value=1.2e-22  Score=191.41  Aligned_cols=107  Identities=23%  Similarity=0.357  Sum_probs=83.3

Q ss_pred             hhhHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHHHHhhhcCCCcccccccccccccceecCcccccccccccccCCC
Q 006807          513 VRLQQLAFIVKHWAKSRGVNVTYQGTLSSYAYVLMCIHFLQQRRPAILPCLQGMEKTYSVTVDDIECAYFDQVDKLHGFG  592 (630)
Q Consensus       513 PrlR~LvllVK~WAK~rGLnd~~~GgLSSYaLiLMVI~FLQ~~~PpILP~Lqel~~~~~~~Vd~~~~~f~d~~e~L~~~~  592 (630)
                      |++|+|+++||+|||.+||++++.|+||||+|++|||||||.+.++++|..++...........          ....+.
T Consensus         2 P~~R~l~~~vK~Wak~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~   71 (183)
T d2b4va1           2 VAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYP----------DFSPLY   71 (183)
T ss_dssp             TTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSC----------CCCCCC
T ss_pred             cceeeHHHHHHHHHHHcCCCCccCCCchHHHHHHHHHHHHHhcCCCCCCCHHHhcccccccccc----------cccccc
Confidence            7899999999999999999999999999999999999999998888888876653221111100          111334


Q ss_pred             CCCcCCHHHHHHHHHHHHhcCCCCCCceEEecCCCcC
Q 006807          593 SRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTI  629 (630)
Q Consensus       593 s~N~~SLgeLLl~FF~yYs~~FDy~~~VISIR~G~il  629 (630)
                      +.|..++|+||.+||+||+.+|||.+.+|||+.|+.+
T Consensus        72 ~~~~~sl~~Ll~~FF~~Y~~~fd~~~~~Isi~~g~~~  108 (183)
T d2b4va1          72 DCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRS  108 (183)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCE
T ss_pred             CCCCCCHHHHHHHHHHHhccccCHHHceeeeccCCcc
Confidence            5678899999999999999889999999999999864
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure