Citrus Sinensis ID: 006808
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 630 | 2.2.26 [Sep-21-2011] | |||||||
| Q15061 | 677 | WD repeat-containing prot | yes | no | 0.823 | 0.766 | 0.227 | 6e-26 | |
| Q6ZQL4 | 677 | WD repeat-containing prot | yes | no | 0.833 | 0.775 | 0.233 | 4e-25 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | yes | no | 0.344 | 0.128 | 0.249 | 3e-09 | |
| Q8BG40 | 658 | Katanin p80 WD40 repeat-c | no | no | 0.277 | 0.265 | 0.264 | 4e-09 | |
| Q9BVA0 | 655 | Katanin p80 WD40 repeat-c | no | no | 0.277 | 0.267 | 0.264 | 5e-09 | |
| Q5ZIU8 | 657 | Katanin p80 WD40 repeat-c | no | no | 0.273 | 0.261 | 0.270 | 1e-08 | |
| Q8TC44 | 478 | POC1 centriolar protein h | no | no | 0.177 | 0.234 | 0.295 | 2e-07 | |
| Q4V7Y7 | 655 | Katanin p80 WD40 repeat-c | N/A | no | 0.277 | 0.267 | 0.270 | 3e-07 | |
| A0CH87 | 403 | Lissencephaly-1 homolog 2 | N/A | no | 0.255 | 0.399 | 0.248 | 3e-07 | |
| Q8BHD1 | 476 | POC1 centriolar protein h | no | no | 0.180 | 0.239 | 0.282 | 4e-07 |
| >sp|Q15061|WDR43_HUMAN WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 144/633 (22%), Positives = 256/633 (40%), Gaps = 114/633 (18%)
Query: 9 ILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
+ +FSP + YFA+ S D +++W+T ++ E+ A HLS
Sbjct: 17 VPCAFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSA---------------HLSGT 61
Query: 68 YTCMKWLSV-------DRKKKRK---LGSS----LLVLGTGGGDVLALAVSAGQLKWRL- 112
TC+ W ++KKRK +G S LL LGT G +L + G+L +L
Sbjct: 62 CTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLI 121
Query: 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
S H V+ I + C+YS D + E + T + K++ +S + +S DGK
Sbjct: 122 SGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGK 181
Query: 173 MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAV 219
ML +A +K + + + F+GH V + F+ G Y LS AV
Sbjct: 182 MLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAV 241
Query: 220 GERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277
+R + +W R++ +K + + P V++D +N + + + + G +
Sbjct: 242 HDRLLNVWQVRSENKEKSAVMSFTVTDEP-VYIDLTLSEN---KEEPVKLAVVCRDGQVH 297
Query: 278 IWYGQNIEELRNTKATKILSSSEDVN----SKSQKSATA--AIFAAKLQDIVKPASVHTF 331
++ E + N K L+S+ + K +KS I AA +
Sbjct: 298 LF-----EHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCS----DKMSLL 348
Query: 332 VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANA 391
+ YG +P+ +++ +NS E L++ + TA+ +
Sbjct: 349 LVYGSWFQPTIERVALNSREP--------------HMCLVRDISNCWAPKVETAITKV-- 392
Query: 392 EDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADS--Q 449
R ++S+ ++ + + K + ++VE + S
Sbjct: 393 ------------------RTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRKSGGN 434
Query: 450 TVCMEDRLRSLGILSN---KDDLLSNSALEATLFNGI---DFETNIPVKKMR------AT 497
V +E+RL ++ I ++ K+DL +NS L G+ DFE V + R T
Sbjct: 435 EVSIEERLGAMDIDTHKKGKEDLQTNS-FPVLLTQGLESNDFEMLNKVLQTRNVNLIKKT 493
Query: 498 ILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYK 557
+L + LL+ L Q ++QW+ +L H +L + L P L +LY+
Sbjct: 494 VLRMPLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQ 553
Query: 558 ITVSREAAFQSLLRLSGRLQLTMAQIDRAAQDK 590
+ SR FQ L L G+L L + Q+ + + K
Sbjct: 554 LMESRVKTFQKLSHLHGKLILLITQVTASEKTK 586
|
Homo sapiens (taxid: 9606) |
| >sp|Q6ZQL4|WDR43_MOUSE WD repeat-containing protein 43 OS=Mus musculus GN=Wdr43 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 148/633 (23%), Positives = 256/633 (40%), Gaps = 108/633 (17%)
Query: 9 ILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
+ +FSP + YFA+ S D ++++W+T ++ E+ A HLS
Sbjct: 17 VPCAFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSA---------------HLSGT 61
Query: 68 YTCMKWL--------SVDRKKKR------KLGSSLLVLGTGGGDVLALAVSAGQLKWRL- 112
TC+ W S RKK++ K + LL LGT G +L + G+L +L
Sbjct: 62 CTCLAWAPARLQAKESHQRKKRKSEVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLT 121
Query: 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
S H V+ I + C+YS D + E T + K++ +S + +S DGK
Sbjct: 122 SGGHENRVNCIQWHQDNDCLYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGK 181
Query: 173 MLATAAGQLKTFNCSDHKKMQKFSGHPGAV---RFMTFSDN---------GKYVLSSAVG 220
ML +A +K + + + F+GH V RF T N G Y LS AV
Sbjct: 182 MLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAVH 241
Query: 221 ERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278
+R + +W R++ +K + + P V++D +N + + + + G ++
Sbjct: 242 DRLLNVWQVRSENKEKSAVMSFTVTDEP-VYVDLTLSEN---KEEPVKLAVVCRDGQVHL 297
Query: 279 WYGQNIEELRNTKATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAY 334
+ E + N K L+S+ + K +K I + S+ + Y
Sbjct: 298 F-----EHILNGHCKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSL--LLVY 350
Query: 335 GLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRA--NAE 392
G +P+ +++ +NS +D ++ +D + + V+ +T + N+E
Sbjct: 351 GNWFQPTIERVALNS-KDTHICLERD----------ISNCWAPTVETAITKVKTPVMNSE 399
Query: 393 DAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVC 452
VL +P I + + +Q K E K EA
Sbjct: 400 AKVL-VPGIPGHH-----------------APIKLPPAQPKEAENKRKLGSTEA-----T 436
Query: 453 MEDRLRSLGI--LSNKDDLLSNSALEATLFNGI---DFET------NIPVKKMRATILSL 501
+E+RL ++ + KDDL +NS L G+ DFE V ++ T+L +
Sbjct: 437 IEERLGAMDLDRKGRKDDLQTNS-FAVLLTQGLESNDFEILNKVLQTKNVNLIKRTVLRI 495
Query: 502 SPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKITVS 561
LL+ L Q ++QW+ +L H +L + L L +LY++ S
Sbjct: 496 PLRVVIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMES 555
Query: 562 REAAFQSLLRLSGRLQLTMAQIDRAAQDKMQIS 594
R FQ L L G+L L + Q+ + + K S
Sbjct: 556 RVKTFQKLSNLHGKLILLVTQVTASEKSKKMTS 588
|
Mus musculus (taxid: 10090) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 40/257 (15%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
SF+P D A + D +KIW G+ + +T + N + + + S D +
Sbjct: 1411 SFTPQGDLIASANADKTVKIWRVRDGK---------ALKTLIGHDNEVNKVNFSPDGKTL 1461
Query: 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
S R KL + VS G+ K L H V +SF+ G
Sbjct: 1462 A--SASRDNTVKLWN----------------VSDGKFKKTLKG-HTDEVFWVSFSPDGKI 1502
Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDH 189
I SA AD + D +G+L+ A + + + DG MLA+ + +K + D
Sbjct: 1503 IASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDG 1562
Query: 190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG-----VKKQSASCVLAME 244
+ FSGH V +FS +G+Y+ +SA ++ + +W+ DG + + A + A+
Sbjct: 1563 HLLHTFSGHSNVVYSSSFSPDGRYI-ASASEDKTVKIWQIDGHLLTTLPQHQAGVMSAIF 1621
Query: 245 HPAVFMDCRCIDNGGVD 261
P D + + +G +D
Sbjct: 1622 SP----DGKTLISGSLD 1634
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Query: 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
L+V G+ G + + A ++ L H + ++ F +G + S D + D
Sbjct: 77 LIVAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFVASGSQDTNIKLWDIR 135
Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKKMQKFSGHPGAVRFM 205
+ ++R ++ + C+ S DGK LA+AA +K ++ + K M +F GH G V +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195
Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM----DCRCIDNGGVD 261
F N +Y+L+S +R I W D K Q SC+ P + D C+ +G D
Sbjct: 196 EFHPN-EYLLASGSSDRTIRFW--DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD 252
Query: 262 DAGLY 266
+Y
Sbjct: 253 SLRVY 257
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Mus musculus (taxid: 10090) |
| >sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Query: 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
L+V G+ G + + A ++ L H + ++ F +G + S D + D
Sbjct: 77 LIVAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFVASGSQDTNIKLWDIR 135
Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKKMQKFSGHPGAVRFM 205
+ ++R ++ + C+ S DGK LA+AA +K ++ + K M +F GH G V +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195
Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM----DCRCIDNGGVD 261
F N +Y+L+S +R I W D K Q SC+ P + D C+ +G D
Sbjct: 196 EFHPN-EYLLASGSSDRTIRFW--DLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD 252
Query: 262 DAGLY 266
+Y
Sbjct: 253 SLRVY 257
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth. Homo sapiens (taxid: 9606) |
| >sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Query: 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
L+V G+ G + + A ++ R H + ++ F +GS + S D + D
Sbjct: 77 LIVAGSQSGSIRVWDLEAAKI-LRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVR 135
Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM 205
+ K+++ T+ + C+ S DGK LA+AA +K ++ + K M +F+GH G V +
Sbjct: 136 RKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVV 195
Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDD 262
F + +Y+L+S +R I W D K SC+ P +F C GG D
Sbjct: 196 EFHPS-EYLLASGSSDRTIRFW--DLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQD 252
Query: 263 A 263
+
Sbjct: 253 S 253
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Gallus gallus (taxid: 9031) |
| >sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G + + F G+CI SAG+D V D LL ++ + G++C++ G L TA
Sbjct: 187 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 246
Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
+ G LK + + + + GH G V ++FS G+ + +S + + LWRT+
Sbjct: 247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 300
|
Required for ciliogenesis. Homo sapiens (taxid: 9606) |
| >sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 10/185 (5%)
Query: 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
L+V G+ G + + A ++ L H VS++ F +G + S D + D
Sbjct: 77 LIVAGSQSGSLRIWDLEAAKILRTLMG-HKANVSSLDFHPYGEFVASGSLDTNIKLWDVR 135
Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKKMQKFSGHPGAVRFM 205
+ +++ T+ + C+ S DGK LA+A+ +K ++ + K M + S H G V +
Sbjct: 136 RKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNII 195
Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFM--DCRCIDNGGVD 261
F N +Y+L+S +R + W D K Q C P A+ D CI GG D
Sbjct: 196 EFHPN-EYLLASGSADRTVRFW--DLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKD 252
Query: 262 DAGLY 266
+Y
Sbjct: 253 SLRVY 257
|
Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Xenopus laevis (taxid: 8355) |
| >sp|A0CH87|LIS12_PARTE Lissencephaly-1 homolog 2 OS=Paramecium tetraurelia GN=GSPATT00007594001 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H GV+ ++F + SA DG + D +G + T ++C+A GK +
Sbjct: 104 HRAGVNCVAFHPQYQILGSASDDGSIKLWDYESGHFEKTLKGHTSNVNCLAFDPTGKYIC 163
Query: 176 TAAGQL--KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
+A+ L K + +H ++ GH +V + FSD+G ++L SA ++ I LW
Sbjct: 164 SASSDLSIKLWELKNHTCVKTLIGHEHSVSTVQFSDHGDFIL-SASRDKSIKLWEV---- 218
Query: 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY---GQNIEEL 287
Q+ C ++ C N D+ + + S+ + YIW GQ + +L
Sbjct: 219 -QTGFCKKTFSEHQEWVRCAVFSN---DEKQM--ASCSQDQMIYIWVIDSGQILHQL 269
|
Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes. Paramecium tetraurelia (taxid: 5888) |
| >sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G + + F +G+CI SAG+D V D LL ++ + G++C++ G L TA
Sbjct: 187 GFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTA 246
Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232
+ G +K + + + + GH G V ++FS +G+ +L+S + + +WRT+ +
Sbjct: 247 SSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGE-LLTSGGADAQVLIWRTNFI 302
|
Required for ciliogenesis. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 630 | ||||||
| 313184296 | 629 | putative transducin family protein / WD- | 0.977 | 0.979 | 0.667 | 0.0 | |
| 224110316 | 617 | predicted protein [Populus trichocarpa] | 0.963 | 0.983 | 0.650 | 0.0 | |
| 359477163 | 628 | PREDICTED: WD repeat-containing protein | 0.995 | 0.998 | 0.662 | 0.0 | |
| 255551877 | 586 | nucleotide binding protein, putative [Ri | 0.898 | 0.965 | 0.647 | 0.0 | |
| 356564408 | 626 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.995 | 0.584 | 0.0 | |
| 356521817 | 626 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.995 | 0.586 | 0.0 | |
| 147853966 | 692 | hypothetical protein VITISV_025726 [Viti | 0.995 | 0.906 | 0.581 | 0.0 | |
| 449464758 | 570 | PREDICTED: uncharacterized protein LOC10 | 0.893 | 0.987 | 0.613 | 0.0 | |
| 449531051 | 547 | PREDICTED: uncharacterized LOC101213788, | 0.868 | 1.0 | 0.624 | 0.0 | |
| 297807165 | 615 | hypothetical protein ARALYDRAFT_325654 [ | 0.944 | 0.967 | 0.579 | 0.0 |
| >gi|313184296|emb|CBL94162.1| putative transducin family protein / WD-40 repeat family protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/617 (66%), Positives = 491/617 (79%), Gaps = 1/617 (0%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
M SSNIRD+LT+FSP+LD FAI SGD RIKIWDT+KGQVQTEF DI ++E TS+Y R E
Sbjct: 1 MASSNIRDLLTAFSPSLDLFAISSGDGRIKIWDTVKGQVQTEFTDIVASEDTSIYAKR-E 59
Query: 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
R HLSVDYTCMKW S +RKKKRKLGSS LVLGTGGGDVLAL V+AG LKWR++DCH GGV
Sbjct: 60 RGHLSVDYTCMKWFSSERKKKRKLGSSFLVLGTGGGDVLALDVAAGHLKWRVNDCHAGGV 119
Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
S+ISFA + SC+Y+AGADGM+C+ID LTG+L GKF+ASTK IS M+VSS+G +LATAA Q
Sbjct: 120 SSISFARNTSCLYTAGADGMICQIDSLTGNLSGKFKASTKAISSMSVSSNGNILATAAAQ 179
Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
+K FN SDHKK+QKFSGHPGAVR M F+++GKY+LSSAVGERYIA+W DG KKQSAS V
Sbjct: 180 MKIFNLSDHKKIQKFSGHPGAVRCMIFTEDGKYILSSAVGERYIAVWSIDGGKKQSASVV 239
Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
L MEHPA+F+D RCID+G V D GLYVLAISE GVCY W+GQNIEELR+ K TKI SSE
Sbjct: 240 LKMEHPAIFVDSRCIDSGEVGDVGLYVLAISEVGVCYFWFGQNIEELRSAKPTKISLSSE 299
Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
D+ S + K A IFAA +Q I K AS FVAYG +KPSFQK+LV+SG DI L+ S D
Sbjct: 300 DILSTTYKGALPTIFAAVIQGIAKAASGQVFVAYGSPVKPSFQKLLVHSGTDIKLSSSHD 359
Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
GVLLPMSQSL+KSK+G+ VQNRV ALDRANAE+A+ P+PK+ DS++KK RH LS DE
Sbjct: 360 GVLLPMSQSLVKSKKGQNVQNRVIALDRANAEEALHPMPKVFDSHEKKKRHDKLSFGQDE 419
Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
M D+ DS +A ++ KDD VE+EAD+ +CMEDRL++LGILS DD NS L + F
Sbjct: 420 EMADLDDSRGRAGLVKSKDDMVELEADTAAICMEDRLKALGILSKVDDHTFNSTLNSATF 479
Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
GID + N+P KKMR +LSL P++ACKLL VLV WQ+RS G N+L WIY ILVNHGH
Sbjct: 480 KGIDLQRNMPHKKMREAVLSLEPSDACKLLGVLVATWQTRSSSGNNVLPWIYSILVNHGH 539
Query: 541 HLLSQESLTPMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQIDRAAQDKMQISSHDLEV 600
++SQ+S T MLSSL K+T SR AA Q LL++SGRLQL MAQID+A K QISSH+ E+
Sbjct: 540 DIMSQKSETQMLSSLLKVTKSRGAAIQPLLQVSGRLQLVMAQIDKATHAKTQISSHEHEM 599
Query: 601 GESEDEDDDVEELLYGE 617
ESED+D+DV E+ YGE
Sbjct: 600 DESEDDDEDVNEIHYGE 616
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110316|ref|XP_002315482.1| predicted protein [Populus trichocarpa] gi|222864522|gb|EEF01653.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/624 (65%), Positives = 489/624 (78%), Gaps = 17/624 (2%)
Query: 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
D+LT+FSP+LDY AI SGD RIKIWDTLKGQVQTEFADI S+E + + ER HLSVD
Sbjct: 10 DLLTAFSPSLDYLAISSGDGRIKIWDTLKGQVQTEFADITSSEGD--FYAKPERGHLSVD 67
Query: 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT 127
Y CMKWLS+D+KKKRKLGSSLLVLGTG GDVLAL VSAGQLKW +SDCHPGGVSA+SF+T
Sbjct: 68 YKCMKWLSLDKKKKRKLGSSLLVLGTGSGDVLALDVSAGQLKWSVSDCHPGGVSAVSFST 127
Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCS 187
SCIY++GADGM+C+ DP TG+ LGKFRASTK ISCM+VSSDGK+LATAA QLK FNCS
Sbjct: 128 RDSCIYTSGADGMICKTDPQTGNTLGKFRASTKAISCMSVSSDGKILATAAAQLKIFNCS 187
Query: 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247
DHKKMQKFSGHPGAVR M F+D+GKY+LSSAVGERY+ALWR DG K+QSASCVLAMEHPA
Sbjct: 188 DHKKMQKFSGHPGAVRSMVFTDDGKYILSSAVGERYVALWRIDGGKRQSASCVLAMEHPA 247
Query: 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307
VF+DC+C +N GVDDAGLYVLAISETGVCY W G+N+EELRN+K TK+L S E+ K+
Sbjct: 248 VFIDCKCFENEGVDDAGLYVLAISETGVCYTWCGKNVEELRNSKPTKVLLSYEEF-PKNH 306
Query: 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS 367
K A + AAKLQ KP + + F+AYGLL+KPSFQKIL++ G DI LN SQDGVLLP+S
Sbjct: 307 KGALPTVLAAKLQGTAKPTAANVFIAYGLLVKPSFQKILMHPGTDIKLNSSQDGVLLPLS 366
Query: 368 QSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVD 427
QSL +K+ R +QNRVTALDRAN EDA+LPLPK+ D ++KK R+ N+ D DEVM + +
Sbjct: 367 QSLSNTKKARDLQNRVTALDRANVEDALLPLPKVYDLHEKKMRNMNI-VDHDEVMEESAE 425
Query: 428 SESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFET 487
S+ V VE D+ T ME +LR L IL +KDD + + L++ GI+ E
Sbjct: 426 SKD-----------VMVEVDAVTTSMEKQLRLLNILGSKDDGILSPTLDSATLKGINLED 474
Query: 488 NIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQES 547
NIP+KKMRAT+LS+ P+NA KLLEVLV WQSRS GK +L WIY ILVNHG ++++QE
Sbjct: 475 NIPLKKMRATVLSMEPSNAYKLLEVLVAKWQSRSNSGKCVLPWIYCILVNHGQYIVAQEK 534
Query: 548 L-TPMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQIDRAAQDKMQISSHDLEVGESEDE 606
+ ML+SL KIT SR A Q LL+L+GRLQL AQID+ A K IS H+ ++ ++ED+
Sbjct: 535 PESQMLNSLLKITKSRAVAVQPLLQLAGRLQLVTAQIDKVALSKNPISLHNDQMDDNEDD 594
Query: 607 DDDVEELLYGEVDDESQISSDEDN 630
DD E LYGE DDESQ+SSD+D+
Sbjct: 595 DDVDEH-LYGEEDDESQLSSDDDS 617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477163|ref|XP_002271327.2| PREDICTED: WD repeat-containing protein 43-like [Vitis vinifera] gi|296083309|emb|CBI22945.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/631 (66%), Positives = 506/631 (80%), Gaps = 4/631 (0%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
MG SNIRD+LT+FSP+LD+FAI SGD RIKIWDTLKGQVQTEFADI ST+TT+LY ++ E
Sbjct: 1 MGPSNIRDLLTTFSPSLDFFAISSGDGRIKIWDTLKGQVQTEFADIISTDTTNLY-SKPE 59
Query: 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
R HLSVDYTC+KWLS+D KKKRKL SLLVLGTG GDVLAL VSAG+LKWR+ DCHPGGV
Sbjct: 60 RGHLSVDYTCLKWLSLDSKKKRKLRCSLLVLGTGSGDVLALDVSAGELKWRIGDCHPGGV 119
Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
SAIS +T GSCIY+AGADGM+ +ID G+LLGKFRASTK IS M+VSSDGK+LATAA Q
Sbjct: 120 SAISCSTDGSCIYAAGADGMISKIDSSAGNLLGKFRASTKAISSMSVSSDGKVLATAAAQ 179
Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
LK N SDHKK+QKFSGHPGAVR M F+D+G+Y+LSSA+GERYIA+WR DG KKQSASCV
Sbjct: 180 LKILNSSDHKKIQKFSGHPGAVRCMIFTDDGEYILSSAIGERYIAVWRIDGSKKQSASCV 239
Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
LAMEHPAVF+D RCIDNG D +GLYVLAISE GVCY WY +N+E+LRNTK TK+ S E
Sbjct: 240 LAMEHPAVFLDSRCIDNGDTDKSGLYVLAISEIGVCYFWYAKNMEDLRNTKPTKVSVSLE 299
Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
D SK+ K + IFAAKLQ +VKPAS FVAYG L+KPSFQK++V+SG DI +N SQD
Sbjct: 300 DNFSKNHKGSLPTIFAAKLQGVVKPASGDVFVAYGSLVKPSFQKVIVHSGTDIKINISQD 359
Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
G+LLPM QS KSK+G V++ VTALDRANAE+A+LP+PKI D ++K R+QN + D DE
Sbjct: 360 GILLPMDQS-HKSKKGLGVKDGVTALDRANAEEALLPIPKIFDFHEKNKRYQNSNIDPDE 418
Query: 421 VMT-DVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATL 479
+M D+++ SQ K +E KD VEA ++T C+E++LRSLG+L NKDDL SNS L +
Sbjct: 419 IMADDLMNVRSQNKAVESKDGLESVEASNETSCLEEQLRSLGLLDNKDDLTSNSMLNSRK 478
Query: 480 FNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHG 539
F GI E N+P KKMRA + S+ P +A +LL+VLV +WQSRS G +L WIY ILVNH
Sbjct: 479 FKGISLEENMPPKKMRAAVSSIIPGDAYELLKVLVTMWQSRSCSGNYVLPWIYTILVNHS 538
Query: 540 HHLLSQESLTPMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQIDRAAQDKMQISSHDLE 599
H++SQE +T +L SL++ T SR A QSLL+LSG LQL MAQID+A+Q+ QI H +
Sbjct: 539 QHIVSQEPVTQLLDSLHQSTKSRGTAVQSLLQLSGGLQLVMAQIDKASQNISQI-QHGHQ 597
Query: 600 VGESEDEDDDVEELLYGEVDDESQISSDEDN 630
V ESEDE+++VE++LYGE DDESQISSD D+
Sbjct: 598 VDESEDEEEEVEDVLYGEEDDESQISSDNDD 628
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551877|ref|XP_002516984.1| nucleotide binding protein, putative [Ricinus communis] gi|223544072|gb|EEF45598.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/584 (64%), Positives = 459/584 (78%), Gaps = 18/584 (3%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
M SSNIRDILT+FSP+LDYFAI SGD R+KIWDT+KGQ+QTEFADI S+ Y + E
Sbjct: 1 MVSSNIRDILTAFSPSLDYFAISSGDGRVKIWDTVKGQLQTEFADITSSNNADFY-TKPE 59
Query: 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
R HLS+DYTCMKWLS+DRK+KRKLGSSLLVLGTG GDVLAL VSAGQLKW +SDCHPGGV
Sbjct: 60 RGHLSIDYTCMKWLSLDRKRKRKLGSSLLVLGTGSGDVLALDVSAGQLKWTVSDCHPGGV 119
Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
SAISF+T SCIY+AGADGM C++DP TG++LGKFRASTK IS ++VS DGK+LATAA Q
Sbjct: 120 SAISFSTSDSCIYTAGADGMCCKLDPQTGNMLGKFRASTKAISSVSVSPDGKILATAAAQ 179
Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
LKT N SD+KK+QKFSGHPGAVR M F+++GKY+LSSAVGERYIALWRTDGVKKQ+ASCV
Sbjct: 180 LKTINLSDNKKIQKFSGHPGAVRAMIFTEDGKYILSSAVGERYIALWRTDGVKKQTASCV 239
Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
LAMEHPAVF+D +C++N GVDDAGL V+AISETGVCY W GQN+EELR K TKI+ SE
Sbjct: 240 LAMEHPAVFLDSKCLENKGVDDAGLCVMAISETGVCYTWCGQNVEELRIAKPTKIVLFSE 299
Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
D SK+QK IFAAKLQ KP + H F+A GLL+KP FQKI+V+SG D+NL+ SQD
Sbjct: 300 D--SKNQKGGLRTIFAAKLQGTAKPMAAHVFIACGLLVKPLFQKIVVHSGTDMNLDISQD 357
Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
G+LLPM++ +LKSK+G VQNRVTALDRAN EDA LP+ K+ D ++K+ R + ++ + DE
Sbjct: 358 GILLPMNRPILKSKKGIDVQNRVTALDRANVEDASLPISKVSDFHEKRMRDKTVNIETDE 417
Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
VM ++D+ SQ + +E + E D+ T ME +LR L ILS+K D + +
Sbjct: 418 VMVGLMDARSQPESVE------DREVDAVTTSMEKQLRLLEILSSKGD--------SMIL 463
Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
ID E N+P KKMRA +LS+ P+NA KLLEVLV WQSRS GK +L W+Y ILVNHGH
Sbjct: 464 GSIDLEANVPQKKMRAAVLSMEPSNASKLLEVLVAKWQSRSCSGKYVLPWMYCILVNHGH 523
Query: 541 HLLSQESL-TPMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQI 583
H+++Q+ T ML+SL +IT SR A Q LL+LSGRLQL AQ+
Sbjct: 524 HIMAQDKPETQMLNSLLEITKSRGVAIQPLLQLSGRLQLVTAQM 567
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564408|ref|XP_003550446.1| PREDICTED: uncharacterized protein LOC100784148 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/633 (58%), Positives = 479/633 (75%), Gaps = 10/633 (1%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNR 58
M S+++RDILT+F+P+LD+FAI +GD R+KIWDTL+GQV TEFADI ST +T +L+
Sbjct: 1 MASTDVRDILTAFNPSLDFFAITAGDGRVKIWDTLRGQVHTEFADITSTHSTATTLHHKS 60
Query: 59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118
HL++DYTC+KW S D+K+KRK SSLLVLGTGGGDVLAL +++GQL WRL+DCHPG
Sbjct: 61 SINGHLALDYTCIKWFSFDKKRKRKHISSLLVLGTGGGDVLALDIASGQLTWRLTDCHPG 120
Query: 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
GV AI+ + + S IY+AGADGMVC ID +TG+LL KF+ASTK +SCM+VS DGK LATAA
Sbjct: 121 GVRAIASSANVSTIYTAGADGMVCLIDFMTGNLLEKFKASTKPVSCMSVSPDGKTLATAA 180
Query: 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238
QLK FNCS+HKK+QKFSGHPG+VR M F+++GK++LSSAVGERY+A+WR +G KKQSAS
Sbjct: 181 AQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGKHILSSAVGERYVAVWRIEGAKKQSAS 240
Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
CVLAMEHPAVF+D RCID+ D+AG+ VLAISE G+CY+W+G ++EELRN K TKI S
Sbjct: 241 CVLAMEHPAVFLDSRCIDSEEHDEAGICVLAISEIGICYLWFGNSVEELRNAKPTKISLS 300
Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358
EDV S++ K A AI+AAKLQ I KPAS F+ YGLL+KPSF+KILV+SG DI LN S
Sbjct: 301 LEDVPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVS 360
Query: 359 QDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDL 418
DGVLLPMSQSL KSK+G Q VTALDRANAEDA+LP+PK+ DS++K+ Q L
Sbjct: 361 HDGVLLPMSQSLGKSKKGTNAQT-VTALDRANAEDALLPIPKVFDSHEKEKAFQK---SL 416
Query: 419 DEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEAT 478
D+ + D + S+ +E++DD + E D +CMEDR+RSLG++S++ SN L
Sbjct: 417 DKDVIDDLHRSSKDDSVEMEDDMAQSEID--VICMEDRMRSLGMISSESVYASNIELCCK 474
Query: 479 LFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538
L GID E +P+KK+RA +LS+ T A KLLEVL+ W+SRS GK IL WIY ILVNH
Sbjct: 475 LLKGIDLEATVPMKKIRAAVLSMKSTKAGKLLEVLLAAWESRSSSGKYILPWIYSILVNH 534
Query: 539 GHHLLSQESLTPMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQIDRAAQDKMQISSHDL 598
+ Q+ +T L+SL KIT R A Q LL+LSGRLQL +QID+A+Q + S H+L
Sbjct: 535 DLSGIPQQYVTRTLNSLDKITNFRGATHQPLLQLSGRLQLLTSQIDKASQ-TISHSVHEL 593
Query: 599 EV-GESEDEDDDVEELLYGEVDDESQISSDEDN 630
++ ++++ +VE+ Y E DD S+IS+D+++
Sbjct: 594 QMQESEDEDEVEVEDEYYHEEDDSSEISTDDES 626
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521817|ref|XP_003529547.1| PREDICTED: uncharacterized protein LOC100815458 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/633 (58%), Positives = 477/633 (75%), Gaps = 10/633 (1%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNR 58
M S+++R ILT+F+P+LD+FAI +GD R+KIWDTLKGQV TEFADI ST +T +L+
Sbjct: 1 MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLKGQVHTEFADITSTHSTATTLHHKS 60
Query: 59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118
HL++DYTC+KW S ++K+KRK SSLLVLGTGGGDVLAL V++ QL WRL+DCHPG
Sbjct: 61 SINGHLALDYTCIKWFSFEKKRKRKHISSLLVLGTGGGDVLALDVASAQLTWRLTDCHPG 120
Query: 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
GV AI+ + + S IY+AG DGMVC ID +TG+LL KF+ASTK +SCM+VS DG LATAA
Sbjct: 121 GVRAIASSANVSSIYTAGVDGMVCVIDFMTGNLLEKFKASTKPVSCMSVSPDGNTLATAA 180
Query: 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238
QLK FNCS+HKK+QKFSGHPG+VR M F+++GKYVLSSAVGERY+A+WR DG KKQSAS
Sbjct: 181 AQLKIFNCSNHKKIQKFSGHPGSVRCMLFTEDGKYVLSSAVGERYVAVWRIDGAKKQSAS 240
Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
CVLAMEHPAVF+D RCID+G D+AG+ VLAISE G+CY+W+G +IEELRN K TKI S
Sbjct: 241 CVLAMEHPAVFLDSRCIDSGEHDEAGICVLAISEIGICYLWFGNSIEELRNAKPTKISLS 300
Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358
ED+ S++ K A AI+AAKLQ I KPAS F+ YGLL+KPSF+KILV+SG DI LN S
Sbjct: 301 LEDMPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVS 360
Query: 359 QDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDL 418
DGVLLPMSQSL+K K+G Q TALDRANAEDA+LP+PK+ DS++K+ QN L
Sbjct: 361 HDGVLLPMSQSLVKYKKGTNAQT-ATALDRANAEDALLPIPKVFDSHEKEKAFQN---SL 416
Query: 419 DEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEAT 478
D+ + D S+ +EI+DD + E D +CMEDR+RSLG++S++ D SN L
Sbjct: 417 DKDVIDDFHRSSKDDSVEIEDDMAQSEID--VICMEDRMRSLGMISSESDYASNIELCCK 474
Query: 479 LFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538
L GID E IPVKK+RA +LS+ T A KLLEVL+ W+SRS GK IL WIY ILVNH
Sbjct: 475 LLKGIDLEATIPVKKIRAAVLSMKSTKAWKLLEVLLAAWKSRSSSGKYILPWIYSILVNH 534
Query: 539 GHHLLSQESLTPMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQIDRAAQDKMQISSHDL 598
+ + ++ +T L+SL KIT R A Q LL+LSGRLQL +QI++A+Q + H+L
Sbjct: 535 DLNHIPRQYVTCTLNSLDKITNFRGATHQPLLQLSGRLQLLTSQIEKASQ-TISHPVHEL 593
Query: 599 EV-GESEDEDDDVEELLYGEVDDESQISSDEDN 630
++ ++++D+VE+ Y E DD S++S+D+++
Sbjct: 594 QMQESEDEDEDEVEDEYYHEEDDGSEMSTDDES 626
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853966|emb|CAN79552.1| hypothetical protein VITISV_025726 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/695 (58%), Positives = 493/695 (70%), Gaps = 68/695 (9%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
MG SNIRD+LT+FSP+LD+FAI SGD RIKIWDTLKGQVQTEFADI ST+TT+LY ++ E
Sbjct: 1 MGPSNIRDLLTTFSPSLDFFAISSGDGRIKIWDTLKGQVQTEFADIISTDTTNLY-SKPE 59
Query: 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
R HLSVDYTC+KWLS+D KKKRKL SLLVLGTG GDVLAL VSAG+LKWR+ DCHPG V
Sbjct: 60 RGHLSVDYTCLKWLSLDSKKKRKLRCSLLVLGTGSGDVLALDVSAGELKWRIGDCHPGRV 119
Query: 121 --------SAISFATHGSCIY---------------SAGADG--MVCEIDPLTGSLLGKF 155
I+ S +Y S +G V + L S++GK+
Sbjct: 120 KFWKDKWCKNIALCDSFSSLYALTTSKEAWLVELWDSTSVEGGWTVGVLGSLGPSMIGKW 179
Query: 156 R---------------------------------------ASTKGISCMAVSSDGKMLAT 176
R ASTK IS M+VSSDGK+LAT
Sbjct: 180 RRGVSAISCSTDGSCIYAAGADGMISKIDSSAGNLLGKFRASTKAISSMSVSSDGKVLAT 239
Query: 177 AAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236
AA QLK N SDHKK+QKFSGHPGAVR M F+D+G+Y+LSSA+GERYIA+WR DG KKQS
Sbjct: 240 AAAQLKILNSSDHKKIQKFSGHPGAVRCMIFTDDGEYILSSAIGERYIAVWRIDGSKKQS 299
Query: 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296
ASCVLAMEHPAVF+D RCIDNG D +GLYVLAISE GVCY WY +N+E+LRNTK TK+
Sbjct: 300 ASCVLAMEHPAVFLDSRCIDNGDTDKSGLYVLAISEIGVCYFWYAKNMEDLRNTKPTKVS 359
Query: 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356
S ED SK+ K + IFAAKLQ +VKPAS FVAYG L+KPSFQK++V+SG DI +N
Sbjct: 360 VSLEDNFSKNHKGSLPTIFAAKLQGVVKPASGDVFVAYGSLVKPSFQKVIVHSGTDIKIN 419
Query: 357 CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSS 416
SQDG+LLPM QS KSK+G V++ VTALDRANAE+A+LP+PKI D ++K R+QN +
Sbjct: 420 ISQDGILLPMDQS-HKSKKGLGVKDGVTALDRANAEEALLPIPKIFDFHEKNKRYQNSNI 478
Query: 417 DLDEVMT-DVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSAL 475
D DE+M D+++ SQ K +E KDD VEA ++T C+E++LRSLG+L NKDDL SNS L
Sbjct: 479 DPDEIMADDLMNVRSQNKAVESKDDLESVEASNETSCLEEQLRSLGLLDNKDDLTSNSML 538
Query: 476 EATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFIL 535
+T F GI E N+P KKMRA + S+ P +A +LL+VLV +WQSRS G +L WIY IL
Sbjct: 539 NSTKFKGISLEENMPPKKMRAAVSSIIPGDAYELLKVLVTMWQSRSCSGNYVLPWIYTIL 598
Query: 536 VNHGHHLLSQESLTPMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQIDRAAQDKMQISS 595
VNH H++SQE + +L SL+ T SR A QSLL+LSG LQL MAQID+A+Q+ QI
Sbjct: 599 VNHSQHIVSQEPVIQLLDSLHLSTKSRGTAVQSLLQLSGGLQLVMAQIDKASQNISQI-Q 657
Query: 596 HDLEVGESEDEDDDVEELLYGEVDDESQISSDEDN 630
H +V ESEDE+++VE++LYGE DDESQISSD D+
Sbjct: 658 HGHQVDESEDEEEEVEDVLYGEEDDESQISSDNDD 692
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464758|ref|XP_004150096.1| PREDICTED: uncharacterized protein LOC101213788 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/575 (61%), Positives = 442/575 (76%), Gaps = 12/575 (2%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
MG SNIRD+LTSFSP L +FAI SGD RIKIWDTLKGQ+QTEFAD ++++TS+ + E
Sbjct: 1 MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSIL-TKPE 59
Query: 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
+ HLSVDY CMKWLS+++K+KRK LL+LGTG GDVLAL V+AG+LKW++SDCHPGGV
Sbjct: 60 KGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGV 119
Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
++ISF THGSCIY+AGADGM+CEI+ LTG+LL KF+ASTK ISC++VS DGK++ATAA Q
Sbjct: 120 ASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQ 179
Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
+K FNCS+HKK+QKFSGHPGAVR M F+++G+Y+LSSAVGERYI +W DG K+QSASCV
Sbjct: 180 VKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCV 239
Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
LAMEHPA+F+D RC ++GG D+ LY+LAISE G CY+WYGQN+EELR K TKIL S
Sbjct: 240 LAMEHPAIFVDSRCSNDGG-DETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGN 298
Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
D+ SKS+K A AI+AAKLQ + K S F+A+GLL+KPSFQ +LV SG DINLN S +
Sbjct: 299 DIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNE 358
Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
G+LLP SQS+ KSK+G VQ V ALDRANAEDA+ P+PKI DS +K +Q+L D +
Sbjct: 359 GILLP-SQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFDSQEKSTLYQDLQVDRSD 417
Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
VMT +VDS S+ +D V V+ DS VCMED+LRSLGIL N DD + S L+ +
Sbjct: 418 VMTQLVDSGSRL------EDDVGVK-DSAAVCMEDQLRSLGILHNTDDHMLESILKLAIS 470
Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
GID E NI KK+R +LSL+P +A KLL LV++WQSR + GKN+L WIY +L+NH
Sbjct: 471 KGIDLEANISQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQ 530
Query: 541 HLLSQESLTPMLSSLYK--ITVSREAAFQSLLRLS 573
H+LSQE ML SL+K ++V+ LL LS
Sbjct: 531 HILSQEQSAQMLDSLFKQFVSVALTVVVTFLLSLS 565
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449531051|ref|XP_004172501.1| PREDICTED: uncharacterized LOC101213788, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/557 (62%), Positives = 434/557 (77%), Gaps = 10/557 (1%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
MG SNIRD+LTSFSP L +FAI SGD RIKIWDTLKGQ+QTEFAD ++++TS+ + E
Sbjct: 1 MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSIL-TKPE 59
Query: 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
+ HLSVDY CMKWLS+++K+KRK LL+LGTG GDVLAL V+AG+LKW++SDCHPGGV
Sbjct: 60 KGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGV 119
Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
++ISF THGSCIY+AGADGM+CEI+ LTG+LL KF+ASTK ISC++VS DGK++ATAA Q
Sbjct: 120 ASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQ 179
Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
+K FNCS+HKK+QKFSGHPGAVR M F+++G+Y+LSSAVGERYI +W DG K+QSASCV
Sbjct: 180 VKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCV 239
Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
LAMEHPA+F+D RC ++GG D+ LY+LAISE G CY+WYGQN+EELR K TKIL S
Sbjct: 240 LAMEHPAIFVDSRCSNDGG-DETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGN 298
Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
D+ SKS+K A AI+AAKLQ + K S F+A+GLL+KPSFQ +LV SG DINLN S +
Sbjct: 299 DIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNE 358
Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
G+LLP SQS+ KSK+G VQ V ALDRANAEDA+ P+PKI DS +K +Q+L D +
Sbjct: 359 GILLP-SQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFDSQEKSTLYQDLQVDRSD 417
Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
VMT +VDS S+ +D V V+ DS VCMED+LRSLGIL N DD + S L+ +
Sbjct: 418 VMTQLVDSGSRL------EDDVGVK-DSAAVCMEDQLRSLGILHNTDDHMLESILKLAIS 470
Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
GID E NI KK+R +LSL+P +A KLL LV++WQSR + GKN+L WIY +L+NH
Sbjct: 471 KGIDLEANISQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQ 530
Query: 541 HLLSQESLTPMLSSLYK 557
H+LSQE ML SL+K
Sbjct: 531 HILSQEQSAQMLDSLFK 547
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807165|ref|XP_002871466.1| hypothetical protein ARALYDRAFT_325654 [Arabidopsis lyrata subsp. lyrata] gi|297317303|gb|EFH47725.1| hypothetical protein ARALYDRAFT_325654 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/620 (57%), Positives = 471/620 (75%), Gaps = 25/620 (4%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
M NI+D+LTSFSPALDY A+ +GD RIKIWDT+KGQVQTEFADIASTE T++Y ++
Sbjct: 1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIY-TKVG 59
Query: 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
+ HLSVDYTCMKWLS+++KKKRKLG+S+LVLGTGGGDVLAL V++GQLKWR+SDCHPGGV
Sbjct: 60 KGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGV 119
Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
+A+S + SCIYS GADGMVC+IDP +G+L+ KF+ASTK +S + VS DGK+L TA+ Q
Sbjct: 120 NAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASAQ 179
Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
LKTFNCSD KK+QKF+GHPG VR + F+++GKYVLSSAVGERYIA+W+T+G KKQSASCV
Sbjct: 180 LKTFNCSDLKKIQKFTGHPGGVRCVAFTEDGKYVLSSAVGERYIAVWKTNGAKKQSASCV 239
Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
LA+EHP VF+D G ++ GLYVLAISE GVCY WYG N+EEL N TK+ ++
Sbjct: 240 LALEHPPVFVDSW----GETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATA 295
Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
D + K K + IFAAKLQ I+KP S H F+A GLL+KPSFQK+++ G D+ LN S+D
Sbjct: 296 DSSLKPHKGSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGTDLVLNASKD 355
Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
G+LLP++QS+ KS +G+ VQN+VT LDRA+AEDA+LP+ ++ D ++KK+ Q SSD D
Sbjct: 356 GILLPITQSVSKSSKGKGVQNKVTTLDRAHAEDALLPIARVADLHEKKSV-QLHSSDKD- 413
Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
TD+VD +SQA +E T MED+LRSLGIL D+ + A++
Sbjct: 414 --TDMVD-QSQADHVE-------------TFSMEDKLRSLGILGGTDE--QKNVSYASII 455
Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
+GID E +P KK+++ + S+ P++A K LE LV +WQ+R+ G+++L WIY I+VNH H
Sbjct: 456 DGIDLEAYLPPKKLKSAVSSMEPSSAFKTLEALVAMWQTRACGGRHLLPWIYSIMVNHSH 515
Query: 541 HLLSQESLTPMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQIDRAAQDKMQISSHDLEV 600
+++SQE +L++L KIT SR A Q LL+LSGRLQL AQI++AA ++ Q +HD E+
Sbjct: 516 YIMSQEPKNQLLNTLVKITKSRGTALQQLLQLSGRLQLVTAQINKAAVNQTQTVAHDQEI 575
Query: 601 GESEDEDDDVEELLYGEVDD 620
ESEDE++DVEE YGE +D
Sbjct: 576 DESEDEEEDVEEHFYGENND 595
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 630 | ||||||
| TAIR|locus:2147972 | 615 | AT5G11240 "AT5G11240" [Arabido | 0.685 | 0.702 | 0.571 | 8.1e-131 | |
| ZFIN|ZDB-GENE-021231-3 | 650 | wdr43 "WD repeat domain 43" [D | 0.514 | 0.498 | 0.243 | 1.3e-18 | |
| MGI|MGI:1919765 | 677 | Wdr43 "WD repeat domain 43" [M | 0.860 | 0.800 | 0.201 | 1.1e-13 | |
| UNIPROTKB|Q15061 | 677 | WDR43 "WD repeat-containing pr | 0.815 | 0.759 | 0.207 | 2.9e-13 | |
| UNIPROTKB|Q8IU52 | 348 | TUWD12 "POC1 centriolar protei | 0.177 | 0.321 | 0.295 | 3.9e-09 | |
| UNIPROTKB|G3V1X0 | 436 | POC1B "POC1 centriolar protein | 0.177 | 0.256 | 0.295 | 9.2e-09 | |
| UNIPROTKB|F1P8S8 | 478 | POC1B "Uncharacterized protein | 0.177 | 0.234 | 0.295 | 9.7e-09 | |
| UNIPROTKB|A5PKH9 | 478 | WDR51B "Uncharacterized protei | 0.177 | 0.234 | 0.295 | 9.7e-09 | |
| UNIPROTKB|Q8TC44 | 478 | POC1B "POC1 centriolar protein | 0.177 | 0.234 | 0.295 | 1.3e-08 | |
| MGI|MGI:1918511 | 476 | Poc1b "POC1 centriolar protein | 0.177 | 0.235 | 0.286 | 3.4e-08 |
| TAIR|locus:2147972 AT5G11240 "AT5G11240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
Identities = 251/439 (57%), Positives = 322/439 (73%)
Query: 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
M NI+D+LTSFSPALDY A+ +GD RIKIWDT+KGQVQTEFADIASTE T++Y ++
Sbjct: 1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIY-TKVG 59
Query: 61 REHLSVDYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRLSDCHPGGV 120
+ HLSVDYTCMKWLS++ ++GQLKWR+SDCHPGGV
Sbjct: 60 KGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGV 119
Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
+A+S + SCIYS GADGMVC+IDP +G+L+ KF+ASTK +S + VS DGK+L TA+ Q
Sbjct: 120 NAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASTQ 179
Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
LKTFNCSD KK+QKF+GHPG VR + F+++GKYVLSSAVGERYIA+W+TDG KKQSASCV
Sbjct: 180 LKTFNCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVWKTDGAKKQSASCV 239
Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
LA+EHP VF+D G ++ GLYVLAISE GVCY WYG N+EEL N TK+ ++
Sbjct: 240 LALEHPPVFVDSW----GETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATA 295
Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
D + K KS+ IFAAKLQ I+KP S H F+A GLL+KPSFQK+++ G D+ LN S+D
Sbjct: 296 DSSLKPYKSSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGNDLVLNASKD 355
Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
G+LLP++QS+ KS + + VQN+VT LDRA+AEDA+LP+ ++ D ++KK+ + SSD D
Sbjct: 356 GILLPITQSVSKSSKRQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQLH-SSDKDT 414
Query: 421 VMTDVVDSESQAKF-MEIK 438
M D ++ F ME K
Sbjct: 415 YMVDQSHADHVETFSMEDK 433
|
|
| ZFIN|ZDB-GENE-021231-3 wdr43 "WD repeat domain 43" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 86/353 (24%), Positives = 146/353 (41%)
Query: 12 SFSPALDYF-AICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
+FSP F A+C+ D R++IW+T +Q E+ A +++ T +G R +E V
Sbjct: 13 AFSPKSHQFLALCAQDGRLRIWNTESKTLQQEYVPSAHLSAACTCVTWGPCRAVQE---V 69
Query: 67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRLSDCHPGGVSAISFA 126
K D G L L H G V+++ +
Sbjct: 70 PQR--KRRKCDAASSAEQSDLLALGTAAGTILIYSTLK-GDLHCTLDGGHSGPVNSVQWH 126
Query: 127 THGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186
S +YS D + E D TG + K++A IS + +S DGKML +A +K ++
Sbjct: 127 PEDSVLYSGSDDTHIAEWDLKTGKVCCKWKADRSAISSLCISPDGKMLLSAGMTIKMWDL 186
Query: 187 SDHKKMQKFSGHPGAVRFMTFS------DNGKYVLSSAVGERYIALW--RTDGVKKQSAS 238
+ +KF+GH V + F+ NG Y LS AV +R +++W R+DG K S
Sbjct: 187 ETKEVYRKFTGHSTMVTTLCFATTRPPDSNGMYFLSGAVHDRLLSVWQVRSDGKDKNSVV 246
Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
+ P +D + D + + + + G +++ E N + K LS
Sbjct: 247 SFTLTDEPQ-HID---LQTSNSKDEAVRLAVVCKDGQLHLF-----EHFLNGQCKKPLSP 297
Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351
+ + + K + + L + + +AYG L+P +K N+ E
Sbjct: 298 ACSLQVSTMKGESP-VPVPLLAAALCADRQNLMLAYGHHLQPVMEKTPFNTSE 349
|
|
| MGI|MGI:1919765 Wdr43 "WD repeat domain 43" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 123/610 (20%), Positives = 236/610 (38%)
Query: 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
+FSP + YFA+ S D ++++W+T ++ E+ A ++ T T + RL+ +
Sbjct: 20 AFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKE--- 76
Query: 67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRL-SDCHPGGVSAISF 125
+ K S G+L +L S H V+ I +
Sbjct: 77 SHQRKKRKS--EVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGGHENRVNCIQW 134
Query: 126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185
C+YS D + E T + K++ +S + +S DGKML +A +K +
Sbjct: 135 HQDNDCLYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWV 194
Query: 186 CSDHKKMQKFSGH--P-GAVRFMTFSDN---------GKYVLSSAVGERYIALW--RTDG 231
+ + F+GH P ++RF T N G Y LS AV +R + +W R++
Sbjct: 195 LETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAVHDRLLNVWQVRSEN 254
Query: 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291
+K + + P V++D +N + + + + G +++ E + N
Sbjct: 255 KEKSAVMSFTVTDEP-VYVDLTLSEN---KEEPVKLAVVCRDGQVHLF-----EHILNGH 305
Query: 292 ATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347
K L+S+ + K +K I + S+ + YG +P+ +++ +
Sbjct: 306 CKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSL--LLVYGNWFQPTIERVAL 363
Query: 348 NSGEDINLNCSQD--GVLLPMSQSLLKSKRGRYVQNRVTAL-DRANAEDAVLPLPKILDS 404
NS +D ++ +D P ++ + + + + L A + LP
Sbjct: 364 NS-KDTHICLERDISNCWAPTVETAITKVKTPVMNSEAKVLVPGIPGHHAPIKLPPAQPK 422
Query: 405 YDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILS 464
+ R + E +D + + + KDD ++ +S V L + G+ S
Sbjct: 423 EAENKRKLGSTEATIEERLGAMDLDRKGR----KDD---LQTNSFAV-----LLTQGLES 470
Query: 465 NKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKG 524
N ++L N L+ N+ +K+ T+L + LL+ L Q
Sbjct: 471 NDFEIL-NKVLQTK-------NVNL-IKR---TVLRIPLRVVIPLLQELTKRLQGHPNSA 518
Query: 525 KNILQWIYFILVNHGHHLLSQESLTPMLSSLYKITVSREAAFXXXXXXXXXXXXTMAQID 584
++QW+ +L H +L + L L +LY++ SR F + Q+
Sbjct: 519 ALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRVKTFQKLSNLHGKLILLVTQVT 578
Query: 585 RAAQDKMQIS 594
+ + K S
Sbjct: 579 ASEKSKKMTS 588
|
|
| UNIPROTKB|Q15061 WDR43 "WD repeat-containing protein 43" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 121/584 (20%), Positives = 230/584 (39%)
Query: 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
+FSP + YFA+ S D +++W+T ++ E+ A ++ T T + RL+ + S
Sbjct: 20 AFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKE-SP 78
Query: 67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRL-SDCHPGGVSAISF 125
K +V G+L +L S H V+ I +
Sbjct: 79 QRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVK----GELHSKLISGGHDNRVNCIQW 134
Query: 126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185
C+YS D + E + T + K++ +S + +S DGKML +A +K +
Sbjct: 135 HQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWV 194
Query: 186 CSDHKKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGERYIALW--RTD 230
+ + F+GH V + F+ G Y LS AV +R + +W R++
Sbjct: 195 LETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSE 254
Query: 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290
+K + + P V++D +N + + + + G +++ E + N
Sbjct: 255 NKEKSAVMSFTVTDEP-VYIDLTLSEN---KEEPVKLAVVCRDGQVHLF-----EHILNG 305
Query: 291 KATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKIL 346
K L+S+ + K +KS I S+ + YG +P+ +++
Sbjct: 306 YCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSL--LLVYGSWFQPTIERVA 363
Query: 347 VNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRYVQNRVTALDRA--NAEDAVLPLPKIL 402
+NS E ++ +D P ++ + R + + L A+ P P
Sbjct: 364 LNSREP-HMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQT 422
Query: 403 DSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGI 462
+ + K + ++E + +D ++ K K +++ +S V L + G+
Sbjct: 423 EQVESKRKSGGNEVSIEERL-GAMDIDTHKK------GKEDLQTNSFPV-----LLTQGL 470
Query: 463 LSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSY 522
SN ++L N L+ N+ +KK T+L + LL+ L Q
Sbjct: 471 ESNDFEML-NKVLQTR-------NVNL-IKK---TVLRMPLHTIIPLLQELTKRLQGHPN 518
Query: 523 KGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKITVSREAAF 566
++QW+ +L H +L + L P L +LY++ SR F
Sbjct: 519 SAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMESRVKTF 562
|
|
| UNIPROTKB|Q8IU52 TUWD12 "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G + + F G+CI SAG+D V D LL ++ + G++C++ G L TA
Sbjct: 57 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 116
Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
+ G LK + + + + GH G V ++FS G+ + +S + + LWRT+
Sbjct: 117 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 170
|
|
| UNIPROTKB|G3V1X0 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G + + F G+CI SAG+D V D LL ++ + G++C++ G L TA
Sbjct: 145 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 204
Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
+ G LK + + + + GH G V ++FS G+ + +S + + LWRT+
Sbjct: 205 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 258
|
|
| UNIPROTKB|F1P8S8 POC1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 34/115 (29%), Positives = 59/115 (51%)
Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G + + F +G+CI SAG+D V D LL ++ + G++C++ G + TA
Sbjct: 187 GFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITA 246
Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
+ G LK + + + + GH G V ++FS G+ + SS + + LWRT+
Sbjct: 247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFSSGGADTQVLLWRTN 300
|
|
| UNIPROTKB|A5PKH9 WDR51B "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G + ++F +G+CI SAG+D V D LL ++ + G++C++ G L TA
Sbjct: 187 GFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITA 246
Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
+ G LK + + + + GH G V ++FS G+ + +S + + LWRT+
Sbjct: 247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFTSGGADAQVLLWRTN 300
|
|
| UNIPROTKB|Q8TC44 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G + + F G+CI SAG+D V D LL ++ + G++C++ G L TA
Sbjct: 187 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 246
Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
+ G LK + + + + GH G V ++FS G+ + +S + + LWRT+
Sbjct: 247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 300
|
|
| MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 33/115 (28%), Positives = 61/115 (53%)
Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
G + + F +G+CI SAG+D V D LL ++ + G++C++ G L TA
Sbjct: 187 GFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTA 246
Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
+ G +K + + + + GH G V ++FS +G+ +L+S + + +WRT+
Sbjct: 247 SSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGE-LLTSGGADAQVLIWRTN 300
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_X000064 | hypothetical protein (617 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 630 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-16 | |
| pfam04003 | 109 | pfam04003, Utp12, Dip2/Utp12 Family | 4e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-05 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 29/240 (12%)
Query: 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGNRLEREHLSV--D 67
FSP A SGD IK+WD G++ S G L S D
Sbjct: 17 FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL----ASGSSD 72
Query: 68 YTCMKWLSVDRKKKRKLG------SSLLVLGTGGGDVLALAVSAGQLK-WRLSD------ 114
T W + R L SS+ G +L+ + +K W +
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTT 130
Query: 115 --CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
H V++++F+ G+ + S+ DG + D TG + T ++ +A S DG+
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190
Query: 173 MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
L +++ G +K ++ S K + GH V + FS +G L+S + I +W
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDLR 249
|
Length = 289 |
| >gnl|CDD|217837 pfam04003, Utp12, Dip2/Utp12 Family | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 4e-16
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 488 NIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQE 546
IP + T+LSL + +LLE L + Q RS + +L+W+ F+L HG +L+S
Sbjct: 12 KIPPSDIELTLLSLPFSYVLRLLEFLAERLQAERSPHLEFLLRWLKFLLRIHGKYLVSNP 71
Query: 547 SLTPMLSSLYKITVSREAAFQSLLRLS-GRLQLTMAQI 583
+L P L SL K+ R + LL L+ G L +QI
Sbjct: 72 NLLPQLRSLQKVLRRRVKDLRDLLGLNKGGLDFLKSQI 109
|
This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2. Length = 109 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 34/211 (16%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
+FSP + S D IK+WD G+ T R H +
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-----------------RGHTD-WVNSV 141
Query: 72 KWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHG 129
+ + + D + + G+ L+ H G V++++F+ G
Sbjct: 142 AFSPDGT-----------FVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDG 189
Query: 130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187
+ S+ +DG + D TG LG R G++ +A S DG +LA+ + G ++ ++
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249
Query: 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218
+ +Q SGH +V + +S +GK + S +
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (149), Expect = 4e-10
Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 41/377 (10%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF------ADIASTETTSLYGNRLEREHLS 65
+FSP + S D IK+WD G+ + + ++ +S GN + S
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131
Query: 66 VDYTCMKW-LSVDRKKKRKL---------------GSSLLVLGTGGGDVLALAVSAGQLK 109
+D T W LS K R L G L + G + + G+
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 110 WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168
L+ H VS+++F+ G I S +DG + D TG LL + + S
Sbjct: 192 STLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS 250
Query: 169 SDGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225
DG +LA+ + G ++ ++ + + SGH +V + FS +GK + S + + +
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVR 309
Query: 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW---YGQ 282
LW + K S+ + H +G + V S+ G +W G+
Sbjct: 310 LWDLETGKLLSS--LTLKGHEGPVSSLSFSPDGSL-----LVSGGSDDGTIRLWDLRTGK 362
Query: 283 NIEELRNTKATKILSSSEDVNSKSQKSA--TAAIFAAKLQDIVKPASVHTFVAYGLLLKP 340
++ L +S S D S S T ++ +++ HT L P
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422
Query: 341 SFQKILVNSGEDINLNC 357
K L + D +
Sbjct: 423 D-GKSLASGSSDNTIRL 438
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
H GGV+ ++F+ G + + DG + D TG LL + T + +A S+DG LA
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 176 TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
+ + ++ ++ + ++ +GH V + FS +G+ + SS
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208
L + T G++C+A S DGK+LAT + G +K ++ + ++ GH G VR + S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 209 DNGKYVLSSAVGERYIALWRTDGVKK 234
+G Y+ S + ++ I LW + +
Sbjct: 61 ADGTYLASGS-SDKTIRLWDLETGEC 85
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.8 bits (112), Expect = 1e-05
Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 29/218 (13%)
Query: 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
S + +++SFSP A S D I++WD S+ S+ +
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS----- 293
Query: 63 HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA 122
G L + G L + L H G VS+
Sbjct: 294 --------------------PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333
Query: 123 ISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA--AG 179
+SF+ GS + S G+ DG + D TG L + + ++ S DG+++++ G
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDG 392
Query: 180 QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
++ ++ S ++ GH V + FS +GK + S
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (106), Expect = 7e-05
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 17/196 (8%)
Query: 103 VSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG- 161
VS L L H +++I+F+ G + S +DG + D G L K
Sbjct: 51 VSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS 110
Query: 162 -ISCMAVSS-DGKMLATAAGQ----LKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYV 214
+S +A+SS DG + A+ +K ++ S K ++ GH +V + FS +GK +
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170
Query: 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274
S + + I LW K S LA V D GL + + S G
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDG------GLLIASGSSDG 221
Query: 275 VCYIWYGQNIEELRNT 290
+W + LR+T
Sbjct: 222 TIRLWDLSTGKLLRST 237
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 630 | |||
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.98 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.94 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.88 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.86 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.81 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.79 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.79 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.78 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.77 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.77 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.76 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.76 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.75 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.71 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.7 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.7 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.7 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.69 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.69 | |
| PF04003 | 110 | Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.68 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.67 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.65 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.64 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.64 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.61 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.58 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.57 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.56 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.56 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.56 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.54 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.54 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.54 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.53 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.46 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.44 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.43 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.42 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.42 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.41 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.41 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.4 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.4 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.4 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.37 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.36 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.33 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.3 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.27 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.24 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.24 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.24 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.23 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.23 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.23 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.22 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.2 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.2 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.18 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.18 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.17 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.16 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.15 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.15 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.14 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.12 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.12 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.11 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.11 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.09 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.09 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.06 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.05 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.05 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.03 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.01 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.01 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.0 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.97 | |
| PF08625 | 141 | Utp13: Utp13 specific WD40 associated domain; Inte | 98.96 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.9 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.9 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.89 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.88 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.87 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.86 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.84 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.84 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.83 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.8 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.77 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.75 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.75 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.74 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.74 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.73 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.72 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.7 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.65 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.62 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.62 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.61 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.61 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.59 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.58 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.55 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.55 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.53 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.52 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.47 | |
| PF09384 | 148 | UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi | 98.46 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.45 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.45 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.45 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.42 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.41 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.41 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.41 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.37 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.32 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.31 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.29 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.28 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.27 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.24 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.23 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.22 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.22 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.17 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.11 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.06 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.04 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.01 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.99 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.96 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.95 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.95 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.9 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.89 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.87 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.87 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.87 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.83 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.83 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.82 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.82 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.8 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.8 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.78 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.76 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.76 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.66 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.65 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.65 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.57 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.49 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.47 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.45 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.37 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.32 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.23 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.23 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.23 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.22 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.22 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.2 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.18 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.18 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.14 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.14 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.12 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.1 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.09 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.09 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.04 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.01 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.99 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.92 | |
| PF04192 | 237 | Utp21: Utp21 specific WD40 associated putative dom | 96.89 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.88 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.83 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.82 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.82 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.72 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.61 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.57 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.56 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.53 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.43 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.34 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.15 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.9 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.85 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.74 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.71 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.58 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.5 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.39 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.34 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.22 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.17 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.14 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.01 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.0 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.0 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.9 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.79 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.66 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.59 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.48 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.47 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.42 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.4 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.33 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.13 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.95 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 93.88 | |
| PRK10115 | 686 | protease 2; Provisional | 93.67 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.58 | |
| PF10446 | 458 | DUF2457: Protein of unknown function (DUF2457); In | 93.45 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.4 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.4 | |
| PRK10115 | 686 | protease 2; Provisional | 93.4 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.37 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.26 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.19 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.98 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.96 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.89 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.79 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 92.22 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.14 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.11 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 91.73 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.62 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.54 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 91.38 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 91.36 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.24 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.14 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 90.81 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 90.77 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.64 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 90.45 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.37 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.29 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.16 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 90.11 | |
| PF04931 | 784 | DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 | 89.82 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 89.54 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.31 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 89.29 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 89.16 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.88 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 88.78 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.23 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.67 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 87.45 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.4 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 87.17 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 86.8 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 86.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 85.79 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 85.42 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 85.31 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.21 | |
| PLN02193 | 470 | nitrile-specifier protein | 84.94 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 84.89 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 83.87 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 83.86 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 83.52 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 83.52 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 83.02 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 82.86 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 82.47 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 82.15 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 81.56 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 80.72 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 80.72 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 80.35 |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=408.77 Aligned_cols=492 Identities=18% Similarity=0.230 Sum_probs=360.8
Q ss_pred CCcccceeEeEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
+..+| .+++|+..|+++|.|+. =|.+-||++.+...+...++|...+.++.|+|+
T Consensus 306 s~~~I--~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD---------------------- 361 (893)
T KOG0291|consen 306 SDQKI--LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD---------------------- 361 (893)
T ss_pred cccee--eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC----------------------
Confidence 34678 56699999999999987 489999999999988888888777777777776
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
++++++|+.||.|+|||..++-|..++. .|++.|+++.|+..|+.+++++.||+|+.||+..+++.++|.....
T Consensus 362 -----gq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 362 -----GQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred -----CcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 8999999999999999999999998886 6999999999999999999999999999999999999999987654
Q ss_pred -CeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 -~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
...|++..|.|..+.+|+ =.|++|++++|+.+..+.||.+||.+++|+|.+..|++++ +|++|++|++-.....
T Consensus 436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~- 513 (893)
T KOG0291|consen 436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT- 513 (893)
T ss_pred eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCce-
Confidence 778999999999998888 3899999999999999999999999999999999988877 8999999999776432
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
..++........ +.|. |+|..|++++.||.|.+||.+.+.++.....-+-... ++.....+.+
T Consensus 514 ---vEtl~i~sdvl~-vsfr-----PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~--------gR~~~D~~ta 576 (893)
T KOG0291|consen 514 ---VETLEIRSDVLA-VSFR-----PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG--------GRKETDRITA 576 (893)
T ss_pred ---eeeEeeccceeE-EEEc-----CCCCeEEEEEecceEEEEEhhhceeeccccchhhccc--------cccccceeeh
Confidence 344555544444 3444 9999999999999999999988776644332211111 0000001100
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc--------------
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR-------------- 382 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~-------------- 382 (630)
. .+ ........+.+|+||.+| ++|+..+.+.++++..+
T Consensus 577 ~-----------------~s----------a~~K~Ftti~ySaDG~~I-lAgG~sn~iCiY~v~~~vllkkfqiS~N~sL 628 (893)
T KOG0291|consen 577 E-----------------NS----------AKGKTFTTICYSADGKCI-LAGGESNSICIYDVPEGVLLKKFQISDNRSL 628 (893)
T ss_pred h-----------------hc----------ccCCceEEEEEcCCCCEE-EecCCcccEEEEECchhheeeeEEeccccch
Confidence 0 00 111234556666666666 66665555555444322
Q ss_pred -----------------eeecccCCc-----cccccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhhcc-
Q 006808 383 -----------------VTALDRANA-----EDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKD- 439 (630)
Q Consensus 383 -----------------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 439 (630)
...++..+. .+..+|+.+.+++..|+.++.. ..+.....+.|..+.....+-
T Consensus 629 dg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeI-----rv~sv~fsPtgraFAaatTEGl 703 (893)
T KOG0291|consen 629 DGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEI-----RVTSVQFSPTGRAFAAATTEGL 703 (893)
T ss_pred hHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceE-----EEEEEEECCCcCeeeeecccce
Confidence 111111111 1347888899988888766632 333333345554443332110
Q ss_pred -------ccc-cccccccccCHHHHHHhcCcccCCCcCCCCchhhhhhhccc---------cccccCChhHHHHHHhccC
Q 006808 440 -------DKV-EVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLS 502 (630)
Q Consensus 440 -------~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~q~l---------~~~~~~~~~~i~~tv~~l~ 502 (630)
.-. ..-.-...++-+.-.++|. ...+..+|.-+| ++++.+|...|+.++..||
T Consensus 704 ~IYsld~~~~FDPf~LD~~vTPe~v~~al~----------~qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp 773 (893)
T KOG0291|consen 704 LIYSLDTTILFDPFDLDVDVTPESVREALR----------EQEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLP 773 (893)
T ss_pred EEEecCCceEEcccccccccCHHHHHHHHh----------cchHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCc
Confidence 000 0000111222222223332 223444555445 3777889999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCCh-hHHHHHHHHHHHHHHHhhHhHHhccc-hHHHHH
Q 006808 503 PTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESL-TPMLSSLYKITVSREAAFQSLLRLSG-RLQLTM 580 (630)
Q Consensus 503 ~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l-~~~l~~L~~~~~~~~~~~~~l~~l~g-~l~~~~ 580 (630)
..|+.+||++|++ +..+..|.+++++|+++||.+||+++.....+ .+.|..||+.|.++.+.+.+|+.++- .|.+++
T Consensus 774 ~~y~erll~~l~~-~l~~s~HieF~l~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv 852 (893)
T KOG0291|consen 774 TAYLERLLKALSR-FLENSPHIEFYLRWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLV 852 (893)
T ss_pred HHHHHHHHHHHHH-HHhcCchHHHHHHHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999996 44577799999999999999999999887765 67899999999999999999998876 777888
Q ss_pred HHHHHH
Q 006808 581 AQIDRA 586 (630)
Q Consensus 581 ~~~~~~ 586 (630)
..++.+
T Consensus 853 ~~~~~~ 858 (893)
T KOG0291|consen 853 SKRQSR 858 (893)
T ss_pred hhhhhh
Confidence 777776
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=384.34 Aligned_cols=516 Identities=16% Similarity=0.171 Sum_probs=386.9
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++|| +.++|+|.|.+||+|+.||.++|||+..+.+++.|++|.+.+..+.|.|...
T Consensus 104 He~Pv--i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~--------------------- 160 (775)
T KOG0319|consen 104 HEAPV--ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN--------------------- 160 (775)
T ss_pred cCCCe--EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc---------------------
Confidence 57899 8889999999999999999999999999999999999999888888877610
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-----
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----- 156 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~----- 156 (630)
..+|++|..|+.|++||+.+..........|.+.|++++|++++..++++|.|..+.+||+.+.+...++.
T Consensus 161 ----~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~ 236 (775)
T KOG0319|consen 161 ----RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESL 236 (775)
T ss_pred ----hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhe
Confidence 35689999999999999997665334456899999999999999999999999999999985432211111
Q ss_pred --------------------------------------------------------------------------------
Q 006808 157 -------------------------------------------------------------------------------- 156 (630)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (630)
T Consensus 237 E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~ 316 (775)
T KOG0319|consen 237 ESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIV 316 (775)
T ss_pred eeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEe
Confidence
Q ss_pred ----------------------------------------------cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC
Q 006808 157 ----------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (630)
Q Consensus 157 ----------------------------------------------~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~ 188 (630)
+|...|.++....+|-+|++|+ .++++|-+++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 4556677777556778889988 7999997754
Q ss_pred Cc----eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee----eecCCceeeeeEEecCCcc
Q 006808 189 HK----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL----AMEHPAVFMDCRCIDNGGV 260 (630)
Q Consensus 189 ~~----~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 260 (630)
+. ++....+|.+.|.+++++..+.-++++++.|+++++|++...+.......+ ....+...+.++.++
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia---- 472 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA---- 472 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec----
Confidence 43 455568999999999998776544444457999999999873322111222 223455567777777
Q ss_pred CCCCCEEEEEecCCcEEEEEcCCcccccc---cCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCc
Q 006808 261 DDAGLYVLAISETGVCYIWYGQNIEELRN---TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL 337 (630)
Q Consensus 261 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~ 337 (630)
|+...|+|||.|.+.+||+++.+..+.. |+...+.+. |++..+ .++++|.|.++++|. ..
T Consensus 473 -~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~----Fs~~dq----~laT~SgD~TvKIW~-----is--- 535 (775)
T KOG0319|consen 473 -PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS----FSKNDQ----LLATCSGDKTVKIWS-----IS--- 535 (775)
T ss_pred -CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE----eccccc----eeEeccCCceEEEEE-----ec---
Confidence 9999999999999999999997776554 444555555 788877 899999999887743 32
Q ss_pred cCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc--eeecccCCccccccCCCcccchhhhhhcccCCC
Q 006808 338 LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLPKILDSYDKKNRHQNLS 415 (630)
Q Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (630)
...++.++.||...|..+.|-.+|.+| +|++.||.+++|+++++ ...++. +..+.|.....+.....++
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt~eC~~tlD~--------H~DrvWaL~~~~~~~~~~t 606 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKTNECEMTLDA--------HNDRVWALSVSPLLDMFVT 606 (775)
T ss_pred cceeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccchhhhhhhhh--------ccceeEEEeecCccceeEe
Confidence 456677888999999999999999999 99999999999999876 666666 3344554444444555566
Q ss_pred CCccccccccccchhhhhhhhhccccccccccccccCHHHHHHhcCcccCCCcCCCCchhhhhhhccc---c----cccc
Q 006808 416 SDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---D----FETN 488 (630)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~q~l---~----~~~~ 488 (630)
+++|. .+..|++.+..+..++.+-.....++-|.|.+.-.++....+.-|+..|..+. . +.+.
T Consensus 607 gg~Dg----------~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~ 676 (775)
T KOG0319|consen 607 GGGDG----------RIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRE 676 (775)
T ss_pred cCCCe----------EEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhc
Confidence 66665 33455555433311111111111112233332222223344444444444333 1 2333
Q ss_pred CChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhc-ccccCCCChhHHHHHHHHHHHHHHHhhH
Q 006808 489 IPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHG-HHLLSQESLTPMLSSLYKITVSREAAFQ 567 (630)
Q Consensus 489 ~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~-~~l~~~~~l~~~l~~L~~~~~~~~~~~~ 567 (630)
.+...+..+|.+|...+...||+++. .|++|+++....+..|..+|..|. ..|...|...+.+..|.+|+++|+.++.
T Consensus 677 r~~e~l~~av~~L~~dq~~~Ll~~~~-~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid 755 (775)
T KOG0319|consen 677 RDPEELGQAVFRLNEDQPEALLQFVV-KWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRID 755 (775)
T ss_pred CCcHHHHHHHHHhhhhhHHHHHHHHH-HhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHH
Confidence 45678999999999999999999999 899999999999999999999765 6788899999999999999999999999
Q ss_pred hHHhccchHHHHHHHHHH
Q 006808 568 SLLRLSGRLQLTMAQIDR 585 (630)
Q Consensus 568 ~l~~l~g~l~~~~~~~~~ 585 (630)
++.+-...|++++.+|+.
T Consensus 756 ~~~~~~~lLdf~~~eM~~ 773 (775)
T KOG0319|consen 756 RLVQDSALLDFTWFEMRI 773 (775)
T ss_pred HHhhhhHHHHHhhhheec
Confidence 999999999999998864
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=344.40 Aligned_cols=322 Identities=18% Similarity=0.252 Sum_probs=271.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| +|++|+|+|..||+|+.|.++|+||+.+.....+.++|...+. |++|.|.
T Consensus 115 ~e~V--l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVl------------------cvawsPD------ 168 (480)
T KOG0271|consen 115 GEAV--LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVL------------------CVAWSPD------ 168 (480)
T ss_pred CCcE--EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEE------------------EEEECCC------
Confidence 3688 9999999999999999999999999999999999987766555 5555554
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-----~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+..|++|+.+|+|++||+.+|+.+.+.+.+|...|++++|.| .+++|++++.||.|+|||+..++++..+.+
T Consensus 169 ---gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 169 ---GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred ---cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence 788999999999999999999999899999999999999976 567899999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEe-----------eCCcE-----------
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----------DNGKY----------- 213 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----------p~~~~----------- 213 (630)
|..+|+|++|--+| ++++++ ++|++|+...|.+.+.++||...|+.++.+ |.+++
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 99999999998655 888888 899999999999999999999999999877 33333
Q ss_pred --------------EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 214 --------------VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 214 --------------l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
+++++ +|.++.+|+....++. +..+..+...+..+.|+ ||+++||+++.|..|++|
T Consensus 325 l~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkp----i~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKP----ITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKLW 394 (480)
T ss_pred HHHHHHhhccCcceeEEec-CCceEEEecccccccc----hhhhhchhhheeeEEEC-----CCccEEEEeecccceeee
Confidence 77776 7999999998776533 44444555566667777 999999999999999999
Q ss_pred EcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC
Q 006808 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (630)
+..+|+.+.++..+...+... ..+.+.+ .+++++.|.+++.|+.+ .......+.+|..+|.++.|+|
T Consensus 395 ~g~tGk~lasfRGHv~~VYqv-awsaDsR----LlVS~SkDsTLKvw~V~--------tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 395 DGRTGKFLASFRGHVAAVYQV-AWSADSR----LLVSGSKDSTLKVWDVR--------TKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred eCCCcchhhhhhhccceeEEE-EeccCcc----EEEEcCCCceEEEEEee--------eeeecccCCCCCceEEEEEecC
Confidence 999999887776554333221 1566666 89999999877765533 3344456779999999999999
Q ss_pred Ccceeeccccceeccccce
Q 006808 360 DGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 360 dg~~l~~s~s~d~~~~~w~ 378 (630)
||..+ ++|+.|+.+|+|.
T Consensus 462 DG~rV-~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 462 DGQRV-ASGGKDKVLRLWR 479 (480)
T ss_pred CCcee-ecCCCceEEEeec
Confidence 99999 9999999999994
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=331.15 Aligned_cols=282 Identities=18% Similarity=0.212 Sum_probs=250.1
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+.|| ..+.||+|++.|||||.+|.++||+..+...+++|.+|...+.. +.|.|...
T Consensus 174 d~rPi--s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~------------------~~fhP~~~--- 230 (459)
T KOG0272|consen 174 DTRPI--SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGA------------------AVFHPVDS--- 230 (459)
T ss_pred CCCcc--eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceee------------------EEEccCCC---
Confidence 35788 77799999999999999999999999999999999987765554 44544421
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+..+++|+.||++++|++.+...+..+ .+|...|..++|+|+|++|.|++.|.+-++||+.++..+....+|...
T Consensus 231 ----~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 231 ----DLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred ----ccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence 556999999999999999988877666 489999999999999999999999999999999999999889999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
|.+++|+|||.++++|+ ..-+|||+++|+++..+.+|..+|.+|.|+|+|-.+++++ .|++++|||++... .
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~-----~ 379 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRS-----E 379 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeecccc-----c
Confidence 99999999999999999 6779999999999999999999999999999999999988 59999999999876 4
Q ss_pred eeeecCCceeeeeEEecCCccCC-CCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
...++.+...++-+.|. | .|.+|++++.|++++||...++.+++
T Consensus 380 ly~ipAH~nlVS~Vk~~-----p~~g~fL~TasyD~t~kiWs~~~~~~~k------------------------------ 424 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYS-----PQEGYFLVTASYDNTVKIWSTRTWSPLK------------------------------ 424 (459)
T ss_pred ceecccccchhhheEec-----ccCCeEEEEcccCcceeeecCCCcccch------------------------------
Confidence 56677777788888887 6 68999999999999999876665432
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.+.||.+.|.++.++|||.++ +|+|.|+++|+|.
T Consensus 425 -------------------------sLaGHe~kV~s~Dis~d~~~i-~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 -------------------------SLAGHEGKVISLDISPDSQAI-ATSSFDRTIKLWR 458 (459)
T ss_pred -------------------------hhcCCccceEEEEeccCCceE-EEeccCceeeecc
Confidence 334899999999999999999 9999999999995
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=333.66 Aligned_cols=461 Identities=19% Similarity=0.241 Sum_probs=336.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.||.+ +||.+...+++|+. +.++||+..+.+++.++... .+.|..|.|-
T Consensus 374 ~dVRsl--~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpg------- 423 (888)
T KOG0306|consen 374 SDVRSL--CVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--------------------YILASKFVPG------- 423 (888)
T ss_pred hheeEE--EeecCceeeeecCC-CcEEEEEccCcceeEEeccc--------------------cEEEEEecCC-------
Confidence 467666 99999988888875 68999999999999988621 2334445553
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----Ccee------
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLL------ 152 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-----~~~~------ 152 (630)
..++++|..+|.+.+||+.+...+-++ .+|.+.|++++.+||+..+++||.|.+|++||+.- |...
T Consensus 424 --d~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 424 --DRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred --CceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec
Confidence 778999999999999999998887555 48999999999999999999999999999999641 2111
Q ss_pred --EEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 153 --GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 153 --~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
+++. -...|.|+.++|||++|+++- ++|++|-+.+-+...++.||.-||.++.+|||++.+++++ .|++|++|-
T Consensus 501 ~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiWG 578 (888)
T KOG0306|consen 501 HTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIWG 578 (888)
T ss_pred cceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEEec
Confidence 1222 346899999999999999987 8999999999999999999999999999999999999988 699999999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
+.-+. |...+-.+...+.++-|. |....+.+++.||.++-||....+.+
T Consensus 579 LdFGD-----CHKS~fAHdDSvm~V~F~-----P~~~~FFt~gKD~kvKqWDg~kFe~i--------------------- 627 (888)
T KOG0306|consen 579 LDFGD-----CHKSFFAHDDSVMSVQFL-----PKTHLFFTCGKDGKVKQWDGEKFEEI--------------------- 627 (888)
T ss_pred cccch-----hhhhhhcccCceeEEEEc-----ccceeEEEecCcceEEeechhhhhhh---------------------
Confidence 99887 433443344444455555 88899999999999999998655442
Q ss_pred chhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccceeeccc
Q 006808 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDR 388 (630)
Q Consensus 309 ~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~ 388 (630)
+++.+|..+|+|++.+|+|.++ +|+|+|.++|+|+.....-.++.
T Consensus 628 ----------------------------------q~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE~tde~~~lEe 672 (888)
T KOG0306|consen 628 ----------------------------------QKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWERTDEILILEE 672 (888)
T ss_pred ----------------------------------eeeccchheeeeeEEcCCCCeE-EeccCCceeEeeeccCcceeeeh
Confidence 2444889999999999999999 99999999999998755444433
Q ss_pred CCccccccCCCcccchhhhhhccc-CCCCCccccccccccchhhhhhhhhccccccccccccccCHHHHHHhcCcccCC-
Q 006808 389 ANAEDAVLPLPKILDSYDKKNRHQ-NLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNK- 466 (630)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~- 466 (630)
... .++..... -++ +.++...+.+..|... ... -+..+.....+..++++.+....
T Consensus 673 ekE-------------~ErEe~yE~l~~-~~e~~~~~~~~~g~~~-----~~s---kkTieSvk~aE~i~ea~di~~~e~ 730 (888)
T KOG0306|consen 673 EKE-------------GEREEEYETLLA-SEEVVAGDGSADGDAG-----VAS---KKTIESVKSAERILEALDIGREEL 730 (888)
T ss_pred hhh-------------hhhHHHHHHhhh-hcccccCCCccccccc-----chh---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 100 00000000 000 0000000000000000 000 01112222233345555432110
Q ss_pred ---CcC-CCCchhhhhhhccc---------cccccCChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 006808 467 ---DDL-LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYF 533 (630)
Q Consensus 467 ---~~~-~~~~~~~~~l~q~l---------~~~~~~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ 533 (630)
... |+ .+. .+|++++ +++..++...++.++.-||++|+..+|+++.. +.+++.+.+.+++.+.+
T Consensus 731 ~~~ee~~~g-~P~-npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~-~~q~~~~veLv~rv~~f 807 (888)
T KOG0306|consen 731 TQLEEYSPG-HPH-NPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDE-CIQRKSKVELVCRVLFF 807 (888)
T ss_pred HhHHhhcCC-CCC-cHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHH-HHcCCCcceeEeeeeee
Confidence 111 22 122 3444444 35566777899999999999999999998884 55577899999999999
Q ss_pred HHHHhcccccCCCChhHHHHHHHHHHHHHHHhhHhHHhccc-hHHHHHHHHHHHhhcc
Q 006808 534 ILVNHGHHLLSQESLTPMLSSLYKITVSREAAFQSLLRLSG-RLQLTMAQIDRAAQDK 590 (630)
Q Consensus 534 ll~~h~~~l~~~~~l~~~l~~L~~~~~~~~~~~~~l~~l~g-~l~~~~~~~~~~~~~~ 590 (630)
|+++|..++.+.+++++.|..++..+++-++.++..++.+- .|.++..+.+.+.+..
T Consensus 808 L~rih~~~it~~~~~kp~l~~i~s~l~~~v~q~rdv~G~NlagL~~l~~E~e~r~~v~ 865 (888)
T KOG0306|consen 808 LLRIHHKQITAHKNMKPLLEKIKSKLREIVEQLRDVLGFNLAGLSLLKQEWEDRENVK 865 (888)
T ss_pred hhhhhhhhhccccchHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhchhcch
Confidence 99999999999999999999999999999998888877665 6777777777665533
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=279.79 Aligned_cols=280 Identities=16% Similarity=0.203 Sum_probs=243.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.| .++.|++|+++++++|.||.+.|||.-+....+.++-....+-.+.|+|.
T Consensus 56 ~Ki--~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS------------------------- 108 (343)
T KOG0286|consen 56 NKI--YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS------------------------- 108 (343)
T ss_pred cce--eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-------------------------
Confidence 456 66699999999999999999999999998888888777767776777766
Q ss_pred cCCcEEEEEeCCCeEEEEEccCC--e---eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAG--Q---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~--~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
+++++.|+-|....||++.+. + .+.+.+.+|++.+.|+.|-+| .+|++++.|.++.+||+++++.+..|.+|
T Consensus 109 --g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH 185 (343)
T KOG0286|consen 109 --GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGH 185 (343)
T ss_pred --CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCC
Confidence 889999999999999999855 2 344556799999999999885 47999999999999999999999999999
Q ss_pred CCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 159 ~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.+.|.+++++| +++.+++|+ +..++||++.+.++++|.+|...|+++.|.|+|.-|++++ +|++.++||++..+..
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQEL 264 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcEE
Confidence 99999999999 999999998 8999999999999999999999999999999999999887 7999999999998754
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (630)
.++........+..+.|+ ..|++|++|..|.++.+||.-.++.
T Consensus 265 ---a~ys~~~~~~gitSv~FS-----~SGRlLfagy~d~~c~vWDtlk~e~----------------------------- 307 (343)
T KOG0286|consen 265 ---AVYSHDSIICGITSVAFS-----KSGRLLFAGYDDFTCNVWDTLKGER----------------------------- 307 (343)
T ss_pred ---eeeccCcccCCceeEEEc-----ccccEEEeeecCCceeEeeccccce-----------------------------
Confidence 455544445566777787 8899999999999999999733221
Q ss_pred hccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+..+.+|.+.|.|+..+|||.-+ +|||+|..+|+|.
T Consensus 308 --------------------------vg~L~GHeNRvScl~~s~DG~av-~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 308 --------------------------VGVLAGHENRVSCLGVSPDGMAV-ATGSWDSTLRIWA 343 (343)
T ss_pred --------------------------EEEeeccCCeeEEEEECCCCcEE-EecchhHheeecC
Confidence 11344899999999999999999 9999999999994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=298.08 Aligned_cols=285 Identities=20% Similarity=0.252 Sum_probs=226.6
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v 141 (630)
||. ..+.|+.|.|. +..|++|++|.++++||+.+.....+. ++|...|.|++|+|||+.|++|+.||.|
T Consensus 113 GH~-e~Vl~~~fsp~---------g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 113 GHG-EAVLSVQFSPT---------GSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred CCC-CcEEEEEecCC---------CceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhccccCCeE
Confidence 553 35556666663 778999999999999999999888666 5899999999999999999999999999
Q ss_pred EEEeCCCCceeE-EeecCCCCeEEEEEcc-----CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcE
Q 006808 142 CEIDPLTGSLLG-KFRASTKGISCMAVSS-----DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 142 ~iwd~~~~~~~~-~~~~~~~~v~~l~~~p-----~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 213 (630)
++||..+|+++. .+.+|...|++++|.| ..++|++++ |+|+|||+..++++..+.+|+.+|+|+.|--+| +
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-l 260 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-L 260 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-e
Confidence 999999987654 6999999999999976 567899988 899999999999999999999999999997554 5
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEec------CCccCCCC-----------------------
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID------NGGVDDAG----------------------- 264 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~----------------------- 264 (630)
+++++ .|++|++|+...+... ..+..+...++.+..+ .+.|.|.+
T Consensus 261 iySgS-~DrtIkvw~a~dG~~~-----r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 261 IYSGS-QDRTIKVWRALDGKLC-----RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred EEecC-CCceEEEEEccchhHH-----HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 55555 8999999999887532 2222222222222222 01122333
Q ss_pred --CEEEEEecCCcEEEEEcCCcc----cccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCcc
Q 006808 265 --LYVLAISETGVCYIWYGQNIE----ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL 338 (630)
Q Consensus 265 --~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~ 338 (630)
..+++|+.|+++.+|+....+ .+..|+.....+. |+|+++ +|++|++|..+++|+++ .
T Consensus 335 ~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~----fSPd~r----~IASaSFDkSVkLW~g~--------t 398 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVS----FSPDGR----YIASASFDKSVKLWDGR--------T 398 (480)
T ss_pred CcceeEEecCCceEEEecccccccchhhhhchhhheeeEE----ECCCcc----EEEEeecccceeeeeCC--------C
Confidence 459999999999999965444 3344555555555 899999 99999999988887643 3
Q ss_pred CceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
...+.++.+|-..|+.++||.|.++| +|||.|.++++|++..
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLl-VS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLL-VSGSKDSTLKVWDVRT 440 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEE-EEcCCCceEEEEEeee
Confidence 34445677999999999999999999 9999999999999954
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=282.43 Aligned_cols=445 Identities=15% Similarity=0.179 Sum_probs=307.9
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++|. +++|||... -+|+.+. -++.||+..+.....++..-...+.+..|..+
T Consensus 26 ~~~vs--sl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D----------------------- 79 (487)
T KOG0310|consen 26 HNSVS--SLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD----------------------- 79 (487)
T ss_pred cCcce--eEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecC-----------------------
Confidence 35774 449999654 3444443 58999999887777666544444443333333
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
|.++++|...|.|+|||+.+...+ +.+.+|+.+|..+.|+|+++ .|++|+.|+.+++||+.+......+.+|..
T Consensus 80 ----G~LlaaGD~sG~V~vfD~k~r~iL-R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD 154 (487)
T KOG0310|consen 80 ----GRLLAAGDESGHVKVFDMKSRVIL-RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD 154 (487)
T ss_pred ----CeEEEccCCcCcEEEeccccHHHH-HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc
Confidence 889999999999999996664444 55568999999999999555 578889999999999998887668999999
Q ss_pred CeEEEEEccC-CCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 GISCMAVSSD-GKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.|.|.+|+|. +.++++|+ |.|++||++.. ..+.++. |..+|..+.|-|.|..++++| ...+++||+.++...
T Consensus 155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql- 230 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL- 230 (487)
T ss_pred eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee-
Confidence 9999999995 45778887 99999999987 5666666 899999999999999998876 568999999977644
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
+.....+...++|+.+. .++..|++++-||.+++||+.+.+.+...+
T Consensus 231 ---l~~~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------------------------- 277 (487)
T KOG0310|consen 231 ---LTSMFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------------------------- 277 (487)
T ss_pred ---hhhhhcccceEEEEEee-----cCCceEeecccccceEEEEccceEEEEeee-------------------------
Confidence 22233244455677776 688999999999999999976554432211
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccceeecccCCcccccc
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVL 396 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~ 396 (630)
-.++|.+++.+||++.+ +.|..+|.+.+..... . ..+.
T Consensus 278 -------------------------------~~~pvLsiavs~dd~t~-viGmsnGlv~~rr~~~--k--------~k~s 315 (487)
T KOG0310|consen 278 -------------------------------YPGPVLSIAVSPDDQTV-VIGMSNGLVSIRRREV--K--------KKPS 315 (487)
T ss_pred -------------------------------cccceeeEEecCCCceE-EEecccceeeeehhhc--c--------cCCC
Confidence 12378999999999998 8888788876643211 0 0111
Q ss_pred CCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhhccccccccccccccCHHHHHHhcCcccCCCcCCCCchhh
Q 006808 397 PLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALE 476 (630)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 476 (630)
+.|++... |. ....+...+.+++.+.++. +. + + ....-....+.+|. .+...+.|.
T Consensus 316 ~~~~~r~~--r~-~~~~v~~r~~~~~~~~ddi------v~-n-~----~~r~~L~~~Dk~Lk---------~F~~kkALd 371 (487)
T KOG0310|consen 316 KEPKRRAD--RS-DGFFVKVRGQNYKGQKDDI------VV-N-E----VKRLKLTYFDKRLK---------QFKHKKALD 371 (487)
T ss_pred cccccccc--cc-ccceEeeecccccccccee------Ee-c-c----ccccCCchHHHHHh---------hhhHHHHHH
Confidence 11111000 00 0000000000001000000 00 0 0 00000011111222 122223332
Q ss_pred hhhh-ccc-----cccccC-ChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCChh
Q 006808 477 ATLF-NGI-----DFETNI-PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLT 549 (630)
Q Consensus 477 ~~l~-q~l-----~~~~~~-~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l~ 549 (630)
.+|. +.- .+++.+ .+..+..++..+....+.+||.||...+ +.++....++.|+..+|.+++..+...|.+.
T Consensus 372 ~vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~~l-~~~rf~~~L~~~~~~iLd~Y~~~i~~s~~l~ 450 (487)
T KOG0310|consen 372 HVLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVKNL-TVVRFASILMEVVSVILDLYARDIEGSPMLA 450 (487)
T ss_pred HHhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHhhhccCHHHH
Confidence 2222 111 123333 4568999999999999999999999555 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhccchHHHHHHH
Q 006808 550 PMLSSLYKITVSREAAFQSLLRLSGRLQLTMAQ 582 (630)
Q Consensus 550 ~~l~~L~~~~~~~~~~~~~l~~l~g~l~~~~~~ 582 (630)
+.+..|+..+++.+....+++++.|+|+|+...
T Consensus 451 k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL~~~ 483 (487)
T KOG0310|consen 451 KLIQALRGKVEQEVRVQKELLRLIGMLDMLGSI 483 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 999999999999999999999999999999853
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=283.01 Aligned_cols=493 Identities=31% Similarity=0.405 Sum_probs=340.9
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc-----------cccc
Q 006808 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR-----------KKKR 82 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~-----------~~~~ 82 (630)
.|-+.|||....||.++||++.+++...+|.+. .+.+..+++..|.-.-. ..++
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~---------------~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPI---------------ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccc---------------hhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 456689999999999999999999998887632 45555667777752211 1111
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
..+...++.|+..|.|.+|++..|+....+. ..|.++|.++.++.+-..|++++.|+.+..|+....+.++.++.....
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 2357789999999999999999999987776 679999999999998889999999999999999999999999998899
Q ss_pred eEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeC-----CcEEEEEeeCCCeEEEEEcCC-Cccc
Q 006808 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-----GKYVLSSAVGERYIALWRTDG-VKKQ 235 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~l~~~~~~d~~i~vwd~~~-~~~~ 235 (630)
+.+++++|||.++++++++|++||+++++.+.+|+||.++|+++.|..+ |.+++++...++.|.+|-+.. .+..
T Consensus 147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk 226 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK 226 (541)
T ss_pred cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence 9999999999999999999999999999999999999999999999887 888888776788899998876 3444
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (630)
...|.+..++.+......... +..+.+.++.+..+-+..|...+...+...+..+....-.+ .++ -++
T Consensus 227 s~~~sl~~~dipv~~ds~~~e----d~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~-~s~-------g~~ 294 (541)
T KOG4547|consen 227 SLSCSLTVPDIPVTSDSGLLE----DGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNAD-SSK-------GFL 294 (541)
T ss_pred hhheeeccCCCCeEecccccc----ccccceEEeeeccCceeeeccccHHHHhcCccccccceeee-ccc-------chh
Confidence 456777777777666554432 11223555555555555666666666665555543332111 111 255
Q ss_pred hccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCc-ceeeccccceeccccceeccceeecccCCcccc
Q 006808 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG-VLLPMSQSLLKSKRGRYVQNRVTALDRANAEDA 394 (630)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~ 394 (630)
++.++- . ...++++||...++.|+.+....+.-..+.-..++ ... ++...-....-..+.|.++.+.. +
T Consensus 295 a~~~~~-~---~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~-~~~~~~k~~~rqv~~n~~~k~~~----~- 364 (541)
T KOG4547|consen 295 AALFGI-D---KAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGK-LKLVTSKEGKRQVVLNSVAKLGE----A- 364 (541)
T ss_pred hhhccc-c---hhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcc-cceeeeecccceeecchhhhhcc----h-
Confidence 555532 1 14567889999888888776654443322222111 110 11000000000000111111100 0
Q ss_pred ccCCCcccchhhhhhcccCCCCCccccccccccchhhhhhhhhccccccccccccccCHHHHHHhcCcccCCCc---CCC
Q 006808 395 VLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDD---LLS 471 (630)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~ 471 (630)
.+. + +..+ +...+.. .......|+.++.|+.++.+...... ...
T Consensus 365 -~~~-------q-~~~p-------------------~~~~l~v-----~~~~g~iEv~~earl~~l~i~~~~~~~k~~~~ 411 (541)
T KOG4547|consen 365 -EVI-------Q-EEPP-------------------LTEDLPV-----LTKGGDIEVSTEARLSALDINLTSNADKSDES 411 (541)
T ss_pred -hhh-------c-ccCc-------------------chhcchh-----hhcCCcceeeehhhhhhcccccccccchhhhh
Confidence 000 0 0000 0011111 11345667888999999887654421 122
Q ss_pred Cchhhhhhhccc---------cccccCChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccc
Q 006808 472 NSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHL 542 (630)
Q Consensus 472 ~~~~~~~l~q~l---------~~~~~~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l 542 (630)
....+..+.|+| .++...+++.|+.++.+++++++.+||+.+..+|++++.+++.++.|++++|..|++||
T Consensus 412 tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h~~yl 491 (541)
T KOG4547|consen 412 TLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSHNSYL 491 (541)
T ss_pred ccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhccccee
Confidence 334566778888 38888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhHhHHhccchH
Q 006808 543 LSQESLTPMLSSLYKITVSREAAFQSLLRLSGRL 576 (630)
Q Consensus 543 ~~~~~l~~~l~~L~~~~~~~~~~~~~l~~l~g~l 576 (630)
++.|+....|..+.+...++.+.+..++...++|
T Consensus 492 ~sv~~~~~~l~~~~~~~~~~ae~~~~~la~~~~l 525 (541)
T KOG4547|consen 492 SSVPDQLETLSGKMQKDLRTAEQLGHLLAMELQL 525 (541)
T ss_pred ecCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999855555555555555555555554444433
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=276.79 Aligned_cols=324 Identities=16% Similarity=0.181 Sum_probs=263.1
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcE--EEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.| +++.|+.|.++|++||.|-+++||.+...+- ...+.+|...+..+.|..+
T Consensus 147 di--~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~------------------------ 200 (893)
T KOG0291|consen 147 DI--TSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN------------------------ 200 (893)
T ss_pred ce--eEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC------------------------
Confidence 56 6679999999999999999999999876554 5556666655555554443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccC-----------------------Cee-----e-----EEccCCCCCCEEEEEEecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSA-----------------------GQL-----K-----WRLSDCHPGGVSAISFATHG 129 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~-----------------------~~~-----~-----~~~~~~h~~~v~~~~~s~~g 129 (630)
..-+++.+.||.+.+|.+.. ++. . ..++......|++.+|++.-
T Consensus 201 ---~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t 277 (893)
T KOG0291|consen 201 ---SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT 277 (893)
T ss_pred ---cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc
Confidence 55589999999999998761 111 1 12223344789999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEE
Q 006808 130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMT 206 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~ 206 (630)
+.|++|-..|...+|.+....+++.+.....+|..++|+..|.+||.|+ |.+.||+..+..-+....+|...+++++
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 9999999999999999999999999998888999999999999999998 7999999999988888999999999999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
++|||+++++++ .||.|+|||..++- |..++..+...++.+.|. ..|+.+++.+.||+|+.||+..++.
T Consensus 358 YSpDgq~iaTG~-eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 358 YSPDGQLIATGA-EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ECCCCcEEEecc-CCCcEEEEeccCce-----EEEEeccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeecccce
Confidence 999999999998 69999999999876 677777777777777777 8899999999999999999999988
Q ss_pred ccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeec
Q 006808 287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (630)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (630)
.+++..+.....+....-|.+. .+.+|+.|. ++..+|. ......++.+.||.++|.+++|+|+|..| +
T Consensus 427 fRTft~P~p~QfscvavD~sGe----lV~AG~~d~----F~IfvWS---~qTGqllDiLsGHEgPVs~l~f~~~~~~L-a 494 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGE----LVCAGAQDS----FEIFVWS---VQTGQLLDILSGHEGPVSGLSFSPDGSLL-A 494 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCC----EEEeeccce----EEEEEEE---eecCeeeehhcCCCCcceeeEEccccCeE-E
Confidence 8877655433222222344454 667777653 3333333 44567778899999999999999999999 9
Q ss_pred cccceeccccceec
Q 006808 367 SQSLLKSKRGRYVQ 380 (630)
Q Consensus 367 s~s~d~~~~~w~~~ 380 (630)
|+|+|+++|+|++-
T Consensus 495 S~SWDkTVRiW~if 508 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIF 508 (893)
T ss_pred eccccceEEEEEee
Confidence 99999999999984
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=251.28 Aligned_cols=274 Identities=15% Similarity=0.216 Sum_probs=219.7
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (630)
-+||++|.|.+||+|...+|.|..+++-..+.++.+...|+ ...|+ +.....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd---------------------------k~~LA-aa~~qh 62 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD---------------------------KKDLA-AAGNQH 62 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC---------------------------cchhh-hccCCe
Confidence 48999999999999999999999999876666666665555 34444 445567
Q ss_pred EEEEEccCCee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEE
Q 006808 98 VLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (630)
Q Consensus 98 v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 176 (630)
|++||+.++.. ....+.+|+..|+++.|..+|+++++||.||+++|||++...+.+.|+ +..+|+++..+|+...|++
T Consensus 63 vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis 141 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELIS 141 (311)
T ss_pred eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEe
Confidence 99999998876 334456899999999999999999999999999999999988777777 6699999999999999999
Q ss_pred eC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc-ceeeeeec-CCceeee
Q 006808 177 AA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-ASCVLAME-HPAVFMD 251 (630)
Q Consensus 177 ~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~~ 251 (630)
|. |.|++||+....+...+ +....+|.++...|+|.+++++. ..|+.++|++....... ...+..+. |......
T Consensus 142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 98 99999999988665554 34456899999999999998887 58999999997754221 11222333 4555555
Q ss_pred eEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEE
Q 006808 252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTF 331 (630)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 331 (630)
|. ++ ||+++|++++.|.+++||+.++. ++..
T Consensus 221 C~-lS-----Pd~k~lat~ssdktv~iwn~~~~--~kle----------------------------------------- 251 (311)
T KOG0315|consen 221 CL-LS-----PDVKYLATCSSDKTVKIWNTDDF--FKLE----------------------------------------- 251 (311)
T ss_pred EE-EC-----CCCcEEEeecCCceEEEEecCCc--eeeE-----------------------------------------
Confidence 54 44 99999999999999999998654 1100
Q ss_pred EEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 332 VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 332 ~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
..+.+|...++.++||.||+|| +|+|.|...|+|++..+
T Consensus 252 -----------~~l~gh~rWvWdc~FS~dg~Yl-vTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 252 -----------LVLTGHQRWVWDCAFSADGEYL-VTASSDHTARLWDLSAG 290 (311)
T ss_pred -----------EEeecCCceEEeeeeccCccEE-EecCCCCceeecccccC
Confidence 0334777789999999999999 99999999999998653
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=250.10 Aligned_cols=287 Identities=18% Similarity=0.247 Sum_probs=233.0
Q ss_pred CcccceeEeEECCC-CCEEEEeeCCCcEEEEECC-----CCcEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTL-----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
++-|+.+ +..+. .+.+.+++.|.++.+|++. .|..++.+++|...+..+..+++
T Consensus 15 ~d~Vt~l--a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d------------------ 74 (315)
T KOG0279|consen 15 TDWVTAL--AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD------------------ 74 (315)
T ss_pred CceEEEE--EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC------------------
Confidence 3456444 66665 4688999999999999874 46678889988888877777776
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+++.++++.|+.+++||+.+++...++ .+|...|.+++|++|++.+++|+.|.+|++|++. +.+..++.
T Consensus 75 ---------g~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~ 143 (315)
T KOG0279|consen 75 ---------GNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH 143 (315)
T ss_pred ---------CceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence 889999999999999999999877666 5899999999999999999999999999999976 55656655
Q ss_pred cC--CCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 157 AS--TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 157 ~~--~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
.+ .+.|.|++|+|+ ..+|++++ ++|++||+++.+....+.+|++.++.+++||||...++++ .||.+.+||++
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~ 222 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLN 222 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEcc
Confidence 44 579999999997 67888888 8999999999999999999999999999999999999888 79999999999
Q ss_pred CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccch
Q 006808 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (630)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (630)
.++ +.+.+++.. .+..++|+ |+.-+|+++.. -.|+|||+.++..+...++...... .+
T Consensus 223 ~~k-----~lysl~a~~-~v~sl~fs-----pnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s--------~~-- 280 (315)
T KOG0279|consen 223 EGK-----NLYSLEAFD-IVNSLCFS-----PNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPS--------SK-- 280 (315)
T ss_pred CCc-----eeEeccCCC-eEeeEEec-----CCceeEeeccC-CceEEEeccchhhhhhccccccccc--------cc--
Confidence 987 456666554 55667776 87666666655 4599999999887766543321110 00
Q ss_pred hhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 311 ~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
...-.-++++||+||..| ++|-.|+.+++|.+.
T Consensus 281 ------------------------------------~~~~~clslaws~dG~tL-f~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 281 ------------------------------------AGDPICLSLAWSADGQTL-FAGYTDNVIRVWQVA 313 (315)
T ss_pred ------------------------------------cCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEee
Confidence 001134689999999999 999999999999873
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=264.38 Aligned_cols=279 Identities=15% Similarity=0.251 Sum_probs=242.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|+.+ -|+|+-..+++++.|++|++||+.+|++...+++|..++..+.|...
T Consensus 109 ~~vt~v--~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~------------------------- 161 (406)
T KOG0295|consen 109 SSVTRV--IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS------------------------- 161 (406)
T ss_pred cceeee--eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC-------------------------
Confidence 467444 89999999999999999999999999999999988777666655544
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.++++++.|=.+++||..+.....+...+|...|.+++|-|.|.++++++.|.+|++|++.++-++.+|.+|...|.
T Consensus 162 --Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 162 --GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred --ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 788999999999999999874332344468999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeC---------------CcEEEEEeeCCCeEEE
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------GKYVLSSAVGERYIAL 226 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~---------------~~~l~~~~~~d~~i~v 226 (630)
.++.+.||.++++++ .++++|-+.++++...+..|..+|.+++|.|. ++++.+++ .|++|++
T Consensus 240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktIk~ 318 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTIKI 318 (406)
T ss_pred EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceEEE
Confidence 999999999999999 79999999999998999999999999999763 23565555 8999999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccc
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS 306 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (630)
||+.++. |++++..+...++.+.|+ |.|+||+++..|+++++||+++++.+....
T Consensus 319 wdv~tg~-----cL~tL~ghdnwVr~~af~-----p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------- 373 (406)
T KOG0295|consen 319 WDVSTGM-----CLFTLVGHDNWVRGVAFS-----PGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------- 373 (406)
T ss_pred EeccCCe-----EEEEEecccceeeeeEEc-----CCCeEEEEEecCCcEEEEEeccceeeeccC---------------
Confidence 9999986 788888888888888887 999999999999999999998887654332
Q ss_pred ccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 307 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.|...|.++.|+.+..++ +|||.|.+.++|+
T Consensus 374 ----------------------------------------ah~hfvt~lDfh~~~p~V-vTGsVdqt~KvwE 404 (406)
T KOG0295|consen 374 ----------------------------------------AHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE 404 (406)
T ss_pred ----------------------------------------CCcceeEEEecCCCCceE-Eeccccceeeeee
Confidence 455577888888888888 9999999999986
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=263.74 Aligned_cols=359 Identities=18% Similarity=0.189 Sum_probs=255.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccc----c-ccccceeeEEeccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER----E-HLSVDYTCMKWLSV 76 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~----~-~~~~~~~~~~w~~~ 76 (630)
.++ ....|||.|.|+|+|...|+|||||+.... +..+|+...+++..+.|..+-.+ | -...-...+.|..-
T Consensus 60 ~~v--tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 60 HQV--TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred cee--EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 355 445899999999999999999999987533 45677888888888888765111 0 00112333444432
Q ss_pred cccc------cc-------ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 006808 77 DRKK------KR-------KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE 143 (630)
Q Consensus 77 ~~~~------~~-------~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~i 143 (630)
..-. ++ ....-.+++|+.|+.|.+|.=.--+...++ ..|..-|.|+.|+|||.+|++++.||++.+
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEE
Confidence 2100 00 001456899999999999986555554343 569999999999999999999999999999
Q ss_pred EeCCCCceeEEee---cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee--------------------------
Q 006808 144 IDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-------------------------- 192 (630)
Q Consensus 144 wd~~~~~~~~~~~---~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~-------------------------- 192 (630)
||-.+|+.+..+. +|.+.|++++|+||++.+++++ .+++|||+.+.+++
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 9999999999998 8999999999999999999998 79999999765433
Q ss_pred -----------------eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc------eee---------
Q 006808 193 -----------------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------SCV--------- 240 (630)
Q Consensus 193 -----------------~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~------~~~--------- 240 (630)
..+.||...|+++..+|++++|++++ .||.|.-|+..++..... ..+
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 24457899999999999999999988 699999999876642100 000
Q ss_pred --e------------------------eecCCcee--------eeeE-EecC---------------------CccCCCC
Q 006808 241 --L------------------------AMEHPAVF--------MDCR-CIDN---------------------GGVDDAG 264 (630)
Q Consensus 241 --~------------------------~~~~~~~~--------~~~~-~~~~---------------------~~~~~~~ 264 (630)
+ .++++... +.++ |... ..++|++
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG 455 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC
Confidence 0 00000000 0000 0000 0245999
Q ss_pred CEEEEEecCCcEEEEEcCCcccc-----cccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccC
Q 006808 265 LYVLAISETGVCYIWYGQNIEEL-----RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK 339 (630)
Q Consensus 265 ~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~ 339 (630)
..++.|+.||.|+||.+.-+... ..+......+. ++|+++ +++++-..+.+-+|+ -....
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va----ySpd~~----yla~~Da~rkvv~yd-------~~s~~ 520 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA----YSPDGA----YLAAGDASRKVVLYD-------VASRE 520 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEE----ECCCCc----EEEEeccCCcEEEEE-------cccCc
Confidence 99999999999999998665432 22333333333 799988 888887654332222 11112
Q ss_pred ceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 340 PSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 340 ~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.......+|+..|.+++|||++..+ +|||-|.++.+|++++.
T Consensus 521 ~~~~~w~FHtakI~~~aWsP~n~~v-ATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 521 VKTNRWAFHTAKINCVAWSPNNKLV-ATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eecceeeeeeeeEEEEEeCCCceEE-EeccccceEEEEEccCh
Confidence 2333556799999999999999999 99999999999999754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=271.48 Aligned_cols=235 Identities=17% Similarity=0.232 Sum_probs=204.2
Q ss_pred cccceeEeEECCC--CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.| .++.|+|. +.-+|+|+.||++++|++.+...+..+.+|...+..+.|.|.
T Consensus 218 ~~v--~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs----------------------- 272 (459)
T KOG0272|consen 218 SRV--GAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS----------------------- 272 (459)
T ss_pred cce--eeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC-----------------------
Confidence 455 55699996 669999999999999999988888888866655555555444
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
|.+|++++.|.+-++||+.++..+ -...||+.+|.+++|+|||..+++||.|..-++||+++|+++..+.+|..+
T Consensus 273 ----G~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~ 347 (459)
T KOG0272|consen 273 ----GKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE 347 (459)
T ss_pred ----Cceeeecccccchhhcccccchhh-HhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccc
Confidence 899999999999999999999876 445699999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
|.+++|+|+|..||+|+ ++++|||++..+.+.++++|..-|+.|.|+| .|.+|++++ .|+++++|...+..+.
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~~--- 423 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSPL--- 423 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCcccc---
Confidence 99999999999999999 8999999999999999999999999999999 566676666 7999999998887633
Q ss_pred eeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 239 CVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
..+ +|...++ ++.++ +++.+|++++.|.++++|.
T Consensus 424 --ksLaGHe~kV~-s~Dis-----~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 --KSLAGHEGKVI-SLDIS-----PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --hhhcCCccceE-EEEec-----cCCceEEEeccCceeeecc
Confidence 333 4555544 45555 8999999999999999995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=272.19 Aligned_cols=280 Identities=15% Similarity=0.197 Sum_probs=231.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|..+ .|.|+|+.|++|+..|.+.+|+..+......+..|.+. +.++.|.+.
T Consensus 97 c~V~~v--~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~------------------Vr~m~ws~~------- 149 (464)
T KOG0284|consen 97 CPVNVV--RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP------------------VRTMKWSHN------- 149 (464)
T ss_pred cceeeE--EEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc------------------ceeEEEccC-------
Confidence 477555 99999999999999999999997544433334445444 445555554
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.++++|..+|.|++|++.-+... .+...|...|++++|+|+...|++|+.||+|+|||....+..+.+.+|...|.
T Consensus 150 --g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 150 --GTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK 226 (464)
T ss_pred --CCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence 889999999999999999876654 44445668999999999999999999999999999999999899999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+++|+|...+|++++ +.|++||.+++.++.++.+|...|..+.|+|++++|++++ .|..++++|+++.+. ++
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkE-----l~ 300 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKE-----LF 300 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHH-----HH
Confidence 999999999999999 7999999999999999999999999999999999999988 799999999996542 23
Q ss_pred eec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 242 AME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 242 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
.+. |...+.+..|.+ -...++.+|+.||.|..|.+...+.+... +
T Consensus 301 ~~r~Hkkdv~~~~WhP-----~~~~lftsgg~Dgsvvh~~v~~~~p~~~i--------------~--------------- 346 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHP-----LNESLFTSGGSDGSVVHWVVGLEEPLGEI--------------P--------------- 346 (464)
T ss_pred Hhhcchhhheeecccc-----ccccceeeccCCCceEEEeccccccccCC--------------C---------------
Confidence 333 556566655554 45688999999999999988522221110 0
Q ss_pred ccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..|...|++++|+|=|.+| ++||.|+++|+|..
T Consensus 347 -------------------------~AHd~~iwsl~~hPlGhil-~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 347 -------------------------PAHDGEIWSLAYHPLGHIL-ATGSNDRTVRFWTR 379 (464)
T ss_pred -------------------------cccccceeeeeccccceeE-eecCCCcceeeecc
Confidence 1677899999999999999 99999999999976
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=253.95 Aligned_cols=284 Identities=14% Similarity=0.216 Sum_probs=238.0
Q ss_pred cceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
||++ ++.|-.++|++|+.|++++|||+.+|++..++.+|...+..+.+++.
T Consensus 154 Vr~v--avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r--------------------------- 204 (460)
T KOG0285|consen 154 VRSV--AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR--------------------------- 204 (460)
T ss_pred EEEE--eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc---------------------------
Confidence 5444 99999999999999999999999999999999999888887777765
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
..++++++.|+.|+.||+..++.+..+ .||-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|.++
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V 283 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV 283 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence 678999999999999999999998666 5899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.+.|....+++|+ ++|++||+..|+...++..|...|++++.+|....|++++ .| .|+-|++..+... ..+
T Consensus 284 ~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~-----~nl 356 (460)
T KOG0285|consen 284 MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFL-----QNL 356 (460)
T ss_pred EeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchh-----hcc
Confidence 9999888999998 8999999999999999999999999999999988888776 34 6999999988643 224
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 323 (630)
..+..++..+... +..++++|+.+|.|.+||.++|-..+..+. .+-.|+.+
T Consensus 357 sgh~~iintl~~n------sD~v~~~G~dng~~~fwdwksg~nyQ~~~t--------------------~vqpGSl~--- 407 (460)
T KOG0285|consen 357 SGHNAIINTLSVN------SDGVLVSGGDNGSIMFWDWKSGHNYQRGQT--------------------IVQPGSLE--- 407 (460)
T ss_pred ccccceeeeeeec------cCceEEEcCCceEEEEEecCcCcccccccc--------------------cccCCccc---
Confidence 4555566666654 456888999999999999988855332211 11112221
Q ss_pred cCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
....|.+.+|...|..| +||..|++|++|.-.
T Consensus 408 ------------------------sEagI~as~fDktg~rl-it~eadKtIk~~keD 439 (460)
T KOG0285|consen 408 ------------------------SEAGIFASCFDKTGSRL-ITGEADKTIKMYKED 439 (460)
T ss_pred ------------------------cccceeEEeecccCceE-EeccCCcceEEEecc
Confidence 11246677788888888 999999999999753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=280.69 Aligned_cols=239 Identities=15% Similarity=0.219 Sum_probs=206.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcE-------------------------------EEEecccccccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-------------------------------QTEFADIASTETTSLYGN 57 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-------------------------------~~~~~~~~~~~~~~~~s~ 57 (630)
.|+.|++|+.+||.|-.|..|++|.+...+. ..++.+|.+++..+.|+|
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 6779999999999999999999999874321 122333444444444443
Q ss_pred cccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC
Q 006808 58 RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137 (630)
Q Consensus 58 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 137 (630)
+ .++|++|+.|++|++|.+.+..++..+. ||..||+++.|+|.|-+|+|+|.
T Consensus 462 d---------------------------~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~ 513 (707)
T KOG0263|consen 462 D---------------------------RRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASH 513 (707)
T ss_pred c---------------------------ccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCC
Confidence 3 7899999999999999999999986664 99999999999999999999999
Q ss_pred CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
|++.++|.....++.+.|.+|-+.|.|+.|+|+..++++|+ .+|++||+.+|..++.|.||.++|++++|||+|++|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 99999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
+++ .|+.|.+||+.++... ....+| ...+..+.|+ .+|..||+|+.|+.|++||+.....
T Consensus 594 Sg~-ed~~I~iWDl~~~~~v----~~l~~H-t~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 594 SGD-EDGLIKIWDLANGSLV----KQLKGH-TGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred ecc-cCCcEEEEEcCCCcch----hhhhcc-cCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhcc
Confidence 998 6999999999998754 233445 6667777787 9999999999999999999865433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=245.15 Aligned_cols=285 Identities=14% Similarity=0.185 Sum_probs=227.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECC-CCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+.| .++.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.+..+.|..+
T Consensus 47 ~geI--~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d----------------------- 101 (338)
T KOG0265|consen 47 KGEI--YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD----------------------- 101 (338)
T ss_pred cceE--EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----------------------
Confidence 3567 677999999999999999999999964 33345566666666555555444
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
++.|++++.|.+|+.||+.+|+...++ ++|..-|+++.-+.-|.. +.+++.|+++++||+++..+++++. ...
T Consensus 102 ----~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky 175 (338)
T KOG0265|consen 102 ----GSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY 175 (338)
T ss_pred ----CCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence 788999999999999999999998776 479999999986655554 6678899999999999999988876 356
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
+++++.|..++..+.+|+ +.|++||++.+....++.||..+|+.+..+|+|.++++-+ .|.++++||++...+. .+
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~-~R 253 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPS-QR 253 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCC-Cc
Confidence 899999999999999999 8999999999999999999999999999999999999988 5999999999875443 22
Q ss_pred eeeeec--CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 239 CVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 239 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
|+..+. .+......+..+ ++|++..+.+|+.|..+++||..+...+
T Consensus 254 ~v~if~g~~hnfeknlL~cs---wsp~~~~i~ags~dr~vyvwd~~~r~~l----------------------------- 301 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCS---WSPNGTKITAGSADRFVYVWDTTSRRIL----------------------------- 301 (338)
T ss_pred eEEEeecchhhhhhhcceee---ccCCCCccccccccceEEEeecccccEE-----------------------------
Confidence 333322 222222222211 2389999999999999999997433221
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..+.+|.+.|++++|+|...+| .+++.|+++++-++
T Consensus 302 --------------------------yklpGh~gsvn~~~Fhp~e~ii-ls~~sdk~i~lgei 337 (338)
T KOG0265|consen 302 --------------------------YKLPGHYGSVNEVDFHPTEPII-LSCSSDKTIYLGEI 337 (338)
T ss_pred --------------------------EEcCCcceeEEEeeecCCCcEE-EEeccCceeEeecc
Confidence 1344889999999999999999 99999999987543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-32 Score=239.30 Aligned_cols=240 Identities=16% Similarity=0.215 Sum_probs=195.5
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
-|.++ +.++||+++++++.|+++++||+.+|+..+.|-+|...+.++.|+++
T Consensus 65 ~v~dv--~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d-------------------------- 116 (315)
T KOG0279|consen 65 FVSDV--VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD-------------------------- 116 (315)
T ss_pred Eecce--EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC--------------------------
Confidence 35445 89999999999999999999999999999999887766665555555
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
++.|++|+.|.+|++|++..+.........|+..|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.+
T Consensus 117 -n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 117 -NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred -CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence 6779999999999999998765553333334789999999997 6789999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
+.++++|||.++++|+ |.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++........
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhccc
Confidence 9999999999999998 899999999999987776 88899999999986555544 366799999998764311111
Q ss_pred eeecC-----CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 241 LAMEH-----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 241 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
...+. ....+. ++|+ ++|..|++|-.|+.|++|.+.
T Consensus 273 d~~g~s~~~~~~~cls-laws-----~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLS-LAWS-----ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccCCcEEEE-EEEc-----CCCcEEEeeecCCcEEEEEee
Confidence 11111 223333 3444 899999999999999999863
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=239.72 Aligned_cols=232 Identities=17% Similarity=0.280 Sum_probs=199.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCC------cEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++|+|+|.|+++|+|+-|+...||++.+. ....++.+|.+...++. |..
T Consensus 101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~------------------f~d------- 155 (343)
T KOG0286|consen 101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR------------------FLD------- 155 (343)
T ss_pred EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEE------------------EcC-------
Confidence 89999999999999999999999999855 34455666655444433 333
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
...|+++++|.+..+||+.+++....+ .+|.+.|.++.++| +++.|++|+-|+..++||++.+.++++|.+|...
T Consensus 156 ---D~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD 231 (343)
T KOG0286|consen 156 ---DNHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD 231 (343)
T ss_pred ---CCceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence 345899999999999999999998666 58999999999999 9999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
|.+++|.|+|.-+++|+ +++++||++..+.+..+... ..+|++++||..|++|+++. .|.++.+||.-.++..
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~v-- 308 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGERV-- 308 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccceE--
Confidence 99999999999999999 89999999999988888632 35899999999999999886 6999999998887643
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
-.+..+..-+.++..+ |||..+++|+.|..++||.
T Consensus 309 ---g~L~GHeNRvScl~~s-----~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 ---GVLAGHENRVSCLGVS-----PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---EEeeccCCeeEEEEEC-----CCCcEEEecchhHheeecC
Confidence 2333455566777776 9999999999999999994
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=277.30 Aligned_cols=280 Identities=23% Similarity=0.325 Sum_probs=227.2
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..| .|+.|+|+|++|++++.|+.+++|+..++. ...++.+|...+..+.|+++
T Consensus 160 ~sv--~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d----------------------- 214 (456)
T KOG0266|consen 160 PSV--TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD----------------------- 214 (456)
T ss_pred Cce--EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-----------------------
Confidence 456 566999999999999999999999998777 66666666655555555554
Q ss_pred cccCCcEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.++++|+.|++|+|||+.. +..+..+ .+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|..
T Consensus 215 ----~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~ 289 (456)
T KOG0266|consen 215 ----GSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD 289 (456)
T ss_pred ----CcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence 77899999999999999944 4566454 59999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEeecCCCC--eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~--v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+|++++|++++.+|++++ +.|++||+.++. ++..+.++... ++++.|+|++.++++++ .|+.+++|++..+..
T Consensus 290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKS 368 (456)
T ss_pred ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcc
Confidence 999999999999999998 899999999998 56777777655 99999999999999988 699999999998764
Q ss_pred ccceeeeeecCCce--eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhh
Q 006808 235 QSASCVLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (630)
Q Consensus 235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (630)
. .. ...|... .+....+ ++.+.++++|+.|+.|++|+..++..+...
T Consensus 369 ~---~~-~~~~~~~~~~~~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l---------------------- 417 (456)
T KOG0266|consen 369 V---GT-YTGHSNLVRCIFSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQRL---------------------- 417 (456)
T ss_pred e---ee-ecccCCcceeEecccc-----cCCCCeEEEEeCCceEEEEeCCccchhhhh----------------------
Confidence 4 11 2223332 2222222 378999999999999999999776543322
Q ss_pred hhhhccccccccCCceeEEEEEcCccCceeeEEecc-CCCcEEEeecCCcceeecccc--ceecccccee
Q 006808 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (630)
Q Consensus 313 ~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~ 379 (630)
.+| ...+..++++|...++ ++++ .|+.+++|..
T Consensus 418 ---------------------------------~~h~~~~~~~~~~~~~~~~~-~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 418 ---------------------------------EGHSKAAVSDLSSHPTENLI-ASSSFEGDGLIRLWKY 453 (456)
T ss_pred ---------------------------------cCCCCCceeccccCCCcCee-eecCcCCCceEEEecC
Confidence 244 4567778888888888 7666 6888888864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=231.60 Aligned_cols=249 Identities=18% Similarity=0.297 Sum_probs=204.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.+.|+.+ ...||+++||+++. ..||+||+.++. .+.+|.+|...+..+.|..+
T Consensus 40 dsqVNrL--eiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d---------------------- 94 (311)
T KOG0315|consen 40 DSQVNRL--EITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD---------------------- 94 (311)
T ss_pred ccceeeE--EEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeec----------------------
Confidence 4567666 99999999999987 589999998876 47888877766666555555
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec-CC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-ST 159 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~ 159 (630)
+.++++|+.||+++|||++...+...+ .|.++|+++..+|+...|++|..+|.|++||+....+...+-. ..
T Consensus 95 -----grWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 95 -----GRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred -----CeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 889999999999999999996665333 5889999999999998999999999999999998877766544 34
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCc------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHK------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.+|.++.+.|||.+++.+. |++++|++-+.. ++..|+.|.+.+..+.+||++++|+++++ |.+++||+...
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-dktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-DKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC-CceEEEEecCC
Confidence 5899999999999999988 999999987643 45678899999999999999999999985 99999999988
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.-+. ....-.|......|. |+ .||.||++|+.|+.+++|++..++.++...+.
T Consensus 247 ~~kl---e~~l~gh~rWvWdc~-FS-----~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 247 FFKL---ELVLTGHQRWVWDCA-FS-----ADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred ceee---EEEeecCCceEEeee-ec-----cCccEEEecCCCCceeecccccCceeeecCCc
Confidence 6211 122233555555554 44 79999999999999999999999887765543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=242.06 Aligned_cols=323 Identities=15% Similarity=0.123 Sum_probs=255.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .+++.+|+.+++|||+.|..-.||+..+|....++.+|..++.++.|+.+
T Consensus 64 ~~sv--Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd------------------------ 117 (399)
T KOG0296|consen 64 TDSV--FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD------------------------ 117 (399)
T ss_pred CCce--EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC------------------------
Confidence 5678 77799999999999999999999999999999999888777666666655
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|..+|.|+||...++...+.+. ..-..+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++
T Consensus 118 ---gtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 118 ---GTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred ---ceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence 8999999999999999999999887775 345678999999999999999999999999999988888999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce-
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS- 238 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~- 238 (630)
++-.|.|+|+.++++. |+|++||+.+++++..+.+. .....++.++..+..++.+. .++.+++-+..+++.....
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCccEEEEccccceEEEecC
Confidence 9999999999999998 99999999999998887633 34567788888887777766 5888888877776643100
Q ss_pred ---eee--eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc--ccccCceeEEeeccCCCcccccchh
Q 006808 239 ---CVL--AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE--LRNTKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 239 ---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
... ...+....+..+.++ ..=.+.|+|+.||+|.|||+...+. +..+......+. +.+ .
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~----w~~-t---- 338 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK----WLN-T---- 338 (399)
T ss_pred CCCccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCceEEEE----EcC-c----
Confidence 001 111222223333333 3345678889999999999876644 334444444433 344 3
Q ss_pred hhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
++|++++.+|.++.|+ .......-++.+|...|++++++|+++++ +|+|.|++.++.++
T Consensus 339 ~~l~t~c~~g~v~~wD--------aRtG~l~~~y~GH~~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWD--------ARTGQLKFTYTGHQMGILDFALSPQKRLV-VTVSDDNTALVFEV 397 (399)
T ss_pred chheeeccCceEEeee--------ccccceEEEEecCchheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence 3999999999887755 33445555788999999999999999999 99999999988765
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-31 Score=249.17 Aligned_cols=336 Identities=17% Similarity=0.226 Sum_probs=251.8
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCC--cE--EEEecccccccccccccccccccccccceeeEEecccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKG--QV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~--~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
.++| ++++|+|-.. .+|+|+.|-+.++|++... .+ ...++.. +...........++|+++|+..
T Consensus 178 ~~~V--~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~--------~~~~~~s~~~nkdVT~L~Wn~~- 246 (524)
T KOG0273|consen 178 ESEV--FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHC--------IREGGKSVPSNKDVTSLDWNND- 246 (524)
T ss_pred CCce--EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhh--------hhhhcccCCccCCcceEEecCC-
Confidence 4578 8999999776 9999999999999998641 11 1111100 0000011233568999999886
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+.+|++|+.+|.+++|+...+.. ..+..|.++|.++.|+..|.+|++++.|+++.+||..++...+.|.-
T Consensus 247 --------G~~LatG~~~G~~riw~~~G~l~--~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 247 --------GTLLATGSEDGEARIWNKDGNLI--STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred --------CCeEEEeecCcEEEEEecCchhh--hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 88999999999999999875544 33457999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 158 STKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
|..+-..+.|-.+..+..+.. +.|+|+.+...+++.+|.+|.++|.++.|+|.|..|++++ +|++++||+.......
T Consensus 317 ~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~- 394 (524)
T KOG0273|consen 317 HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSV- 394 (524)
T ss_pred ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcch-
Confidence 988877889987655444444 8999999999999999999999999999999999999987 6999999998765422
Q ss_pred ceeeeeecCCceeeeeEEecCCcc--CC-CCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGV--DD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
.-...|...+.+..|.+.+.. +| .+..+++++.|++|++||+..+.++..+..+...+.... |+|+++ +
T Consensus 395 ---~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~----y 466 (524)
T KOG0273|consen 395 ---HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGR----Y 466 (524)
T ss_pred ---hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCc----E
Confidence 112235555555555432221 12 467899999999999999999998877644443333322 899998 9
Q ss_pred hhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+++|++|+.+.+++.+ ....++.+ ...+.|..++|+.+|.+| ..+-.|+.+.+-++
T Consensus 467 lAsGs~dg~V~iws~~--------~~~l~~s~-~~~~~Ifel~Wn~~G~kl-~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTK--------TGKLVKSY-QGTGGIFELCWNAAGDKL-GACASDGSVCVLDL 522 (524)
T ss_pred EEecCCCCeeEecccc--------chheeEee-cCCCeEEEEEEcCCCCEE-EEEecCCCceEEEe
Confidence 9999999987776533 33333333 233458999999999998 44444777766544
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=267.76 Aligned_cols=200 Identities=19% Similarity=0.333 Sum_probs=187.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++|| ..+.|+|+.++|++||.|+++|+|.+.+..++-.+++|..++..+.|+|.
T Consensus 451 ~GPV--yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~------------------------ 504 (707)
T KOG0263|consen 451 SGPV--YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR------------------------ 504 (707)
T ss_pred CCce--eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC------------------------
Confidence 6899 66699999999999999999999999999999999999888887777766
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
|-++++|+.|++-++|........ +++.+|-+.|.|+.|+|+.+++++||.|.+|++||+.+|..++.|.+|.++|
T Consensus 505 ---GyYFatas~D~tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 505 ---GYYFATASHDQTARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV 580 (707)
T ss_pred ---ceEEEecCCCceeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence 888999999999999999987776 5556999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+++|+|+|++|++|+ |.|.+||+.++..+..+.+|++.|.++.|+.+|..|+++| .|++|++||+....
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEchhhc
Confidence 9999999999999999 9999999999999999999999999999999999999998 69999999987654
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-31 Score=246.04 Aligned_cols=282 Identities=17% Similarity=0.204 Sum_probs=222.5
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
..| .-+.||++|+|||+++.|.+..+|.+..-. ..+++.+|..++. -+.|.|.
T Consensus 225 dEV--Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~------------------yi~wSPD---- 280 (519)
T KOG0293|consen 225 DEV--WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVS------------------YIMWSPD---- 280 (519)
T ss_pred CcE--EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceE------------------EEEECCC----
Confidence 456 556999999999999999999999875433 3566666655544 4555554
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
.+++++|+.+..+.+||+.+|.....+..+|...+.+++|.|||..+++|+.|+++..||+. |.....+++...
T Consensus 281 -----dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~ 354 (519)
T KOG0293|consen 281 -----DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD 354 (519)
T ss_pred -----CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc
Confidence 67799999999999999999999877777777899999999999999999999999999985 656666665443
Q ss_pred -CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 161 -GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 161 -~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.|.+++.++||+++++.+ ..|++|+..+........ ...+|++++.|.+++++++.- .+..|++||+...+..
T Consensus 355 ~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv-- 430 (519)
T KOG0293|consen 355 PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLV-- 430 (519)
T ss_pred ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHH--
Confidence 799999999999988876 799999987765544333 456899999999999988876 6899999999965432
Q ss_pred eeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 238 SCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
....+| .+.++--.||.. .+..++++|++|+.|+||+..+|+.+.
T Consensus 431 --~kY~Ghkq~~fiIrSCFgg----~~~~fiaSGSED~kvyIWhr~sgkll~---------------------------- 476 (519)
T KOG0293|consen 431 --RKYFGHKQGHFIIRSCFGG----GNDKFIASGSEDSKVYIWHRISGKLLA---------------------------- 476 (519)
T ss_pred --HHhhcccccceEEEeccCC----CCcceEEecCCCceEEEEEccCCceeE----------------------------
Confidence 222233 334444455541 455899999999999999987775532
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.||...|.|++|.|......+|+|.|+++|+|...
T Consensus 477 ---------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 477 ---------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ---------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 3448888999999999988766999999999999653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=255.85 Aligned_cols=247 Identities=15% Similarity=0.248 Sum_probs=218.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+..|+++ .|+|...+++++-.+|.|.|||.++...+..|.-..-++.+..|-..
T Consensus 13 SdRVKsV--d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR------------------------ 66 (794)
T KOG0276|consen 13 SDRVKSV--DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR------------------------ 66 (794)
T ss_pred CCceeee--ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec------------------------
Confidence 5567555 99999999999999999999999999999988765555555444433
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~ 161 (630)
.+++++|+.|+.|+||+..+++.+..+ .+|...|++++.+|...+++++|.|-+|++||.+. ..+.++|.+|...
T Consensus 67 ---knWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 67 ---KNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY 142 (794)
T ss_pred ---cceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence 788999999999999999999999676 58999999999999999999999999999999875 4788999999999
Q ss_pred eEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC--cEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 162 v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~--~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
|.+++|+| |.+.+++++ ++|++|.+.+..+..++.+|...|+++.|-+.| .||++++ +|.+|+|||..+..
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~--- 218 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKS--- 218 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHH---
Confidence 99999999 778999999 899999999999999999999999999998755 6999988 79999999998865
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
|+.++..+..-+..++|. |.=..|++|++||+++||+..|.+.-.+.
T Consensus 219 --CV~TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 219 --CVQTLEGHTNNVSFVFFH-----PELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred --HHHHhhcccccceEEEec-----CCCcEEEEecCCccEEEecCcceehhhhh
Confidence 777888777778888887 88899999999999999998887765543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=225.26 Aligned_cols=248 Identities=17% Similarity=0.313 Sum_probs=205.3
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.++|+++ .|+.||+|.++|+.|.+|++|+...|.+++++.+|...+.....+.+
T Consensus 16 ~qgaV~av--ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D----------------------- 70 (307)
T KOG0316|consen 16 AQGAVRAV--RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD----------------------- 70 (307)
T ss_pred cccceEEE--EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----------------------
Confidence 35789555 99999999999999999999999999999999999877766555544
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--CceeEEeecCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--GSLLGKFRAST 159 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~ 159 (630)
+..+++|++|..|.+||+.+|+...++ .+|.+.|+.+.|+.+...+++|+.|.++++||.++ .++++.+....
T Consensus 71 ----nskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 71 ----NSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred ----ccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 667899999999999999999999666 58999999999999999999999999999999985 47888888888
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
..|.++.++ +..+++|+ |+++.||++.|+.....-+ .||++++|+++++..++++ -|+++++.|-.+++..
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL-- 218 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLL-- 218 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-ccceeeecccchhHHH--
Confidence 899999886 45777777 9999999999987655544 5799999999999999988 5999999999998865
Q ss_pred eeeeeecCCce-eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 238 SCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 238 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
..+. +|... .-.-+++. ....++++|++||.+++||+....++......
T Consensus 219 -~sYk-Ghkn~eykldc~l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 219 -KSYK-GHKNMEYKLDCCLN-----QSDTHVFSGSEDGKVYFWDLVDETQISKLSVV 268 (307)
T ss_pred -HHhc-ccccceeeeeeeec-----ccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence 2222 33322 22223333 56689999999999999999888776554433
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=248.82 Aligned_cols=278 Identities=24% Similarity=0.327 Sum_probs=228.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++++|++++.||.|++|++.++.....+..|... +..+.|.+.
T Consensus 9 ~~~i--~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~------ 62 (289)
T cd00200 9 TGGV--TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP------------------VRDVAASAD------ 62 (289)
T ss_pred CCCE--EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc------------------eeEEEECCC------
Confidence 4688 56699999999999999999999999988776666544333 335555554
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++++.+|.|++|++.+++....+. .|...|.++.|++++.++++++.++.+.+||+.+++....+..|...+
T Consensus 63 ---~~~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 138 (289)
T cd00200 63 ---GTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138 (289)
T ss_pred ---CCEEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence 5679999999999999999877665554 688899999999998888888889999999999999999999888899
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.+++|+|++.++++++ +.|++||+++++.+..+..|...+.++.|+|+++.+++++ .++.|++||+..++..
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~----- 212 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCL----- 212 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCcee-----
Confidence 9999999999998886 8999999999998888999999999999999999999888 4999999999876533
Q ss_pred eee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccc
Q 006808 241 LAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL 319 (630)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 319 (630)
..+ .+.. .+..+.+. |++.++++++.+|.|++|+..+++.+.
T Consensus 213 ~~~~~~~~-~i~~~~~~-----~~~~~~~~~~~~~~i~i~~~~~~~~~~------------------------------- 255 (289)
T cd00200 213 GTLRGHEN-GVNSVAFS-----PDGYLLASGSEDGTIRVWDLRTGECVQ------------------------------- 255 (289)
T ss_pred cchhhcCC-ceEEEEEc-----CCCcEEEEEcCCCcEEEEEcCCceeEE-------------------------------
Confidence 223 2333 44556665 788888888889999999986533211
Q ss_pred cccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 320 d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.+..|...+.+++|+|++.+| ++++.|+.+++|+
T Consensus 256 ------------------------~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~ 289 (289)
T cd00200 256 ------------------------TLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD 289 (289)
T ss_pred ------------------------EccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence 111445578899999999999 9999999999995
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=282.12 Aligned_cols=304 Identities=16% Similarity=0.179 Sum_probs=226.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+.| .+++|+|+|++||+|+.|+.|+||++.+..... ........ . ..+ ...+.++.|.+..
T Consensus 483 ~~~V--~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~~~~~----~---~~~--~~~v~~l~~~~~~----- 544 (793)
T PLN00181 483 SNLV--CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIHYPVV----E---LAS--RSKLSGICWNSYI----- 544 (793)
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccccceE----E---ecc--cCceeeEEeccCC-----
Confidence 3567 556999999999999999999999975421000 00000000 0 001 2356788998765
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.+|++++.||.|++||+.+++.+..+ .+|...|++++|+| ++.+|++|+.||+|++||+.++.++..+..+ ..
T Consensus 545 ---~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~ 619 (793)
T PLN00181 545 ---KSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN 619 (793)
T ss_pred ---CCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence 668999999999999999998887555 57999999999997 7889999999999999999999998888754 67
Q ss_pred eEEEEEc-cCCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc-c
Q 006808 162 ISCMAVS-SDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S 236 (630)
Q Consensus 162 v~~l~~~-p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~-~ 236 (630)
+.++.|+ ++|.+|++|+ |.|++||+++++ .+..+.+|...|.++.|. ++.+|++++ .|+.|++||+...... .
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGIN 697 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccC
Confidence 8999995 5789999998 899999998865 567788999999999997 677888887 6999999999754210 0
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
...+..+..+...+.++.++ |++.+|++|+.||.|++|+......+..+. +..... +
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s-----~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-----------~~~~~~-----~-- 754 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLS-----VSDGYIATGSETNEVFVYHKAFPMPVLSYK-----------FKTIDP-----V-- 754 (793)
T ss_pred CcceEEEcCCCCCeeEEEEc-----CCCCEEEEEeCCCEEEEEECCCCCceEEEe-----------cccCCc-----c--
Confidence 11333444445556667776 899999999999999999975443221110 000000 0
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+. ....|...|.+++|+|+|..| ++|+.|+.+++|++
T Consensus 755 -----------------~~~-------~~~~~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~~ 792 (793)
T PLN00181 755 -----------------SGL-------EVDDASQFISSVCWRGQSSTL-VAANSTGNIKILEM 792 (793)
T ss_pred -----------------ccc-------ccCCCCcEEEEEEEcCCCCeE-EEecCCCcEEEEec
Confidence 000 012455679999999999999 99999999999985
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=249.07 Aligned_cols=283 Identities=11% Similarity=0.126 Sum_probs=229.5
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..|.++ .|.| .+.+|++|+.|+.|+||++.. +.++++|.+|..++..+.|+..
T Consensus 215 kgvsai--~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~----------------------- 269 (503)
T KOG0282|consen 215 KGVSAI--QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC----------------------- 269 (503)
T ss_pred cccchh--hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc-----------------------
Confidence 456334 8999 899999999999999999876 8999999999998888888877
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..+++++.|+.|++||+.+|++..++.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+
T Consensus 270 ----g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg 343 (503)
T KOG0282|consen 270 ----GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG 343 (503)
T ss_pred ----CCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence 78899999999999999999999988743 3578999999988 7799999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.|..+.|-++|+.+++++ +++++|+.+.+..++... .+.....++..+|++.++++-+ .|+.|.++.+...-+.+.
T Consensus 344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLNK 422 (503)
T ss_pred heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccCH
Confidence 999999999999999998 899999998876655432 2233566888999999999887 599999999766544322
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
...+.-..-.....-+.|+ |||.+|++|+.||.+.+||.++-+.+.
T Consensus 423 kK~feGh~vaGys~~v~fS-----pDG~~l~SGdsdG~v~~wdwkt~kl~~----------------------------- 468 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFS-----PDGRTLCSGDSDGKVNFWDWKTTKLVS----------------------------- 468 (503)
T ss_pred hhhhcceeccCceeeEEEc-----CCCCeEEeecCCccEEEeechhhhhhh-----------------------------
Confidence 2333322122223334455 999999999999999999986655432
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+++.|...++.+.|+|-..--++|+++||.|++|+
T Consensus 469 --------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 --------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --------------------------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 23366677888889987664448999999999995
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=240.55 Aligned_cols=248 Identities=14% Similarity=0.276 Sum_probs=210.4
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .+++|+.+|++||+|+.||.++||+. +|.++.++..|.+++. .+.|+-.
T Consensus 236 kdV--T~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~------------------slKWnk~------- 287 (524)
T KOG0273|consen 236 KDV--TSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIF------------------SLKWNKK------- 287 (524)
T ss_pred CCc--ceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceE------------------EEEEcCC-------
Confidence 467 45599999999999999999999996 5777777776665554 5555443
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+++|++++.||++.+||..++.....+. -|..+..++.|-.+ ..|++++.|+.|+++-+....++.+|.+|.++|.
T Consensus 288 --G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 288 --GTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN 363 (524)
T ss_pred --CCEEEeccCCccEEEEeccCceEEEeee-eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence 8999999999999999999999886664 58888788999754 4689999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC---------cEEEEEeeCCCeEEEEEcCCC
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---------KYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~---------~~l~~~~~~d~~i~vwd~~~~ 232 (630)
++.|+|.|.+|++++ ++++||+.........+.+|...|..+.|+|.| ..+++++ .|+++++||+..+
T Consensus 364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~g 442 (524)
T KOG0273|consen 364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESG 442 (524)
T ss_pred EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCC
Confidence 999999999999999 899999998888888999999999999999965 3577777 5999999999998
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
. ++..+..+...+..+.|+ |+|+++|+|+.||.|+||+.++++.++......
T Consensus 443 v-----~i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 443 V-----PIHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred c-----eeEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 7 444553444445566666 999999999999999999999999988766543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=241.98 Aligned_cols=279 Identities=16% Similarity=0.271 Sum_probs=223.6
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
++..| .|+.| |...+++|..|++|+|||..+-.+...+.+|.+++. |+.+.
T Consensus 196 ~skgV--YClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL------------------CLqyd------- 246 (499)
T KOG0281|consen 196 NSKGV--YCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL------------------CLQYD------- 246 (499)
T ss_pred cCCce--EEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEE------------------eeecc-------
Confidence 45667 55566 456899999999999999999999998887776554 44332
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeEEeecC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAS 158 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~ 158 (630)
...|++|+.|.+|++||+++|+++.++. +|...|..+.|+ +.++++++.|.++.+||+.+.. +.+.+.+|
T Consensus 247 ----~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH 319 (499)
T KOG0281|consen 247 ----ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH 319 (499)
T ss_pred ----ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh
Confidence 5679999999999999999999997765 799999999996 4599999999999999998764 34557889
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
...|..+.|+. +++++++ .+|++|++.+++.++++.+|...|.|+.+. ++++++++ .|.+|++||+..+.
T Consensus 320 rAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS-SDntIRlwdi~~G~--- 391 (499)
T KOG0281|consen 320 RAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGA--- 391 (499)
T ss_pred hhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC-CCceEEEEeccccH---
Confidence 99999999964 5898888 699999999999999999999999888774 77777776 59999999999987
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
|...++.+...+.++-|. .+.|++|+.||+|+|||+.++..-+.. .+ .+
T Consensus 392 --cLRvLeGHEeLvRciRFd-------~krIVSGaYDGkikvWdl~aaldpra~---------------~~-----~~-- 440 (499)
T KOG0281|consen 392 --CLRVLEGHEELVRCIRFD-------NKRIVSGAYDGKIKVWDLQAALDPRAP---------------AS-----TL-- 440 (499)
T ss_pred --HHHHHhchHHhhhheeec-------CceeeeccccceEEEEecccccCCccc---------------cc-----ch--
Confidence 455666777778888774 688999999999999999776542111 00 00
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
++.++..|++.|..+.| |...+ +++++|.+|-+|++.+.
T Consensus 441 ------------------------Cl~~lv~hsgRVFrLQF--D~fqI-vsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 441 ------------------------CLRTLVEHSGRVFRLQF--DEFQI-ISSSHDDTILIWDFLNG 479 (499)
T ss_pred ------------------------HHHhhhhccceeEEEee--cceEE-EeccCCCeEEEEEcCCC
Confidence 11123357777877777 45567 89999999999999653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=220.33 Aligned_cols=289 Identities=14% Similarity=0.114 Sum_probs=217.1
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC---CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD 138 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d 138 (630)
+|.+ .+-.++|+|.. +.+|++|+.|..|++|+... -.+...+..+|...|++++|+|.|++|++||.|
T Consensus 12 gh~~-r~W~~awhp~~--------g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 12 GHKD-RVWSVAWHPGK--------GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred CCCC-cEEEEEeccCC--------ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 4444 45567777753 56899999999999999985 334445557899999999999999999999999
Q ss_pred CcEEEEeCCC--CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC---ceeeEeecCCCCeEEEEEeeCC
Q 006808 139 GMVCEIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 139 g~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~~ 211 (630)
.++.||.-.. .+++.++.+|...|.|++|+++|.+||+++ .+|-+|.+..+ .+...+..|+..|..+.|+|..
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 9999997553 478999999999999999999999999999 79999998754 4677889999999999999998
Q ss_pred cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..|++++ .|++|++|.-..+. ...|..++..+...+-+..|. +.|..|++++.|++++||-..+.-... ++
T Consensus 163 dlL~S~S-YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~-----~~G~rl~s~sdD~tv~Iw~~~~~~~~~-~s 233 (312)
T KOG0645|consen 163 DLLFSCS-YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFD-----NIGSRLVSCSDDGTVSIWRLYTDLSGM-HS 233 (312)
T ss_pred ceeEEec-cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEec-----CCCceEEEecCCcceEeeeeccCcchh-cc
Confidence 8888887 69999999877422 244777777666566677777 889999999999999999854332111 11
Q ss_pred ceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCC-cceeeccccc
Q 006808 292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD-GVLLPMSQSL 370 (630)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~~s~s~ 370 (630)
.....+. .. ...|++++.|+.++++... ....+.........-..|...|++++|.|. ...| +||+.
T Consensus 234 r~~Y~v~----W~------~~~IaS~ggD~~i~lf~~s-~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L-~s~~D 301 (312)
T KOG0645|consen 234 RALYDVP----WD------NGVIASGGGDDAIRLFKES-DSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRL-ASGGD 301 (312)
T ss_pred cceEeee----ec------ccceEeccCCCEEEEEEec-CCCCCchHHHHHhhhcccccccceEEEcCCCCCce-eecCC
Confidence 1111111 11 1278888888766554322 001111112222233469899999999995 4455 99999
Q ss_pred eeccccceec
Q 006808 371 LKSKRGRYVQ 380 (630)
Q Consensus 371 d~~~~~w~~~ 380 (630)
||.+++|.++
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999874
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=234.13 Aligned_cols=284 Identities=20% Similarity=0.269 Sum_probs=227.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
-|..|||||+||++||.||-|.|||..+|+....++-...... --....+.|+.|... ...
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~f----------MMmd~aVlci~FSRD---------sEM 277 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNF----------MMMDDAVLCISFSRD---------SEM 277 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcce----------eecccceEEEeeccc---------HHH
Confidence 4669999999999999999999999999987665542111000 001335666666544 678
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++|+.||.|++|.+.+|.++.++..+|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..|++|...|+...|+
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeec--CCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
++|..+++++ |+|++|+..+..++.+|+. ...+|.++..-|.+ ..++++. ..++++|.++...-.. .+..
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQvVr----sfsS 432 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQVVR----SFSS 432 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccceEEe----eecc
Confidence 9999999998 9999999999999999863 34578888877754 4666665 6889999988764322 2222
Q ss_pred c--CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 244 E--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 244 ~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
+ ..+.++.+. .+ |.|.++.+.+.|+.++-|...+|..-+
T Consensus 433 GkREgGdFi~~~-lS-----pkGewiYcigED~vlYCF~~~sG~LE~--------------------------------- 473 (508)
T KOG0275|consen 433 GKREGGDFINAI-LS-----PKGEWIYCIGEDGVLYCFSVLSGKLER--------------------------------- 473 (508)
T ss_pred CCccCCceEEEE-ec-----CCCcEEEEEccCcEEEEEEeecCceee---------------------------------
Confidence 1 234455444 44 899999999999999999876665421
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
++..|...|+.++-+|...+| +|-+.|+.+++|.
T Consensus 474 ----------------------tl~VhEkdvIGl~HHPHqNll-AsYsEDgllKLWk 507 (508)
T KOG0275|consen 474 ----------------------TLPVHEKDVIGLTHHPHQNLL-ASYSEDGLLKLWK 507 (508)
T ss_pred ----------------------eeecccccccccccCcccchh-hhhcccchhhhcC
Confidence 233566677778888888888 8999999999994
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-28 Score=232.26 Aligned_cols=316 Identities=15% Similarity=0.158 Sum_probs=238.6
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEec---ccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
|+.|+|||++||+.+.||++.+||-.+|+.+..+. +|.+.+ ..+.|.|. +
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI------------------falsWsPD---------s 247 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI------------------FALSWSPD---------S 247 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE------------------EEEEECCC---------C
Confidence 45999999999999999999999999999999987 444444 45556555 6
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCC--CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
..+++++.|.+++|||+.+++++.++.-+.+ ..-.++-|. +..|++.+.+|+|.+++...+..+..+.+|...|++
T Consensus 248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 6799999999999999999999888765544 344555664 568999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceee-------------------------------------------------
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQ------------------------------------------------- 193 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~------------------------------------------------- 193 (630)
+..+|++++|++|+ |.|.-|+..++..-+
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg 405 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG 405 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecC
Confidence 99999999999999 999999985542110
Q ss_pred ------------------------EeecCC--------CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 194 ------------------------KFSGHP--------GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 194 ------------------------~~~~h~--------~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
.+..+. ....+++++|++..+++++ .|+.|++|.+....... ...
T Consensus 406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~e--e~~ 482 (603)
T KOG0318|consen 406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKE--EAK 482 (603)
T ss_pred CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccc--eee
Confidence 000010 1236788899999999998 79999999998866431 222
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc---cCcee-EEeeccCCCcccccchhhhhhhc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN---TKATK-ILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
...|.. .++++.++ ||+.+|++|...+.+.+||..+.+.... +...+ .++. ++|+.+ .+++|
T Consensus 483 ~~~h~a-~iT~vayS-----pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a----WsP~n~----~vATG 548 (603)
T KOG0318|consen 483 LLEHRA-AITDVAYS-----PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA----WSPNNK----LVATG 548 (603)
T ss_pred eecccC-CceEEEEC-----CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE----eCCCce----EEEec
Confidence 334444 45666676 9999999999999999999988765211 11112 2222 678877 89999
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+.|..+.+|. +.. ....+.-...|...|+.+.|-.+..+ +|.+.|..+|+|++.
T Consensus 549 SlDt~Viiys-----v~k--P~~~i~iknAH~~gVn~v~wlde~tv--vSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 549 SLDTNVIIYS-----VKK--PAKHIIIKNAHLGGVNSVAWLDESTV--VSSGQDANIKVWNVT 602 (603)
T ss_pred cccceEEEEE-----ccC--hhhheEeccccccCceeEEEecCceE--EeccCcceeEEeccc
Confidence 9987554432 111 11113334468888999999988776 577779999999873
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=223.99 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=230.9
Q ss_pred CcccceeEeEECC---CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~---dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
+-|| +.++||| +|-+|++++.||.-.+-+-.+|..+.+|.+|.+.+.+..+..+
T Consensus 14 trpv--vdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n--------------------- 70 (334)
T KOG0278|consen 14 TRPV--VDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN--------------------- 70 (334)
T ss_pred Ccce--eEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch---------------------
Confidence 4588 6669986 8889999999999999999999999999999888876665544
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeecC
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRAS 158 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~ 158 (630)
....++++.|-+-++||.-+|..+..+ .|..-|.+++|+.|.++|++|+.+..+++||++..+ +...+.+|
T Consensus 71 ------a~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh 142 (334)
T KOG0278|consen 71 ------ATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH 142 (334)
T ss_pred ------hhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC
Confidence 344578888888999999999998777 588889999999999999999999999999998764 45568899
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.+.|..+.|....+.++++. ++|++||.+++..++++. ...+|+++.++++|+++.++ ..+.|.+||..+-...
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l- 218 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL- 218 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEeccccccce-
Confidence 99999999988777777755 999999999999998887 56789999999999987664 4778999999887643
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
.....+.. +..+... |+...+++|+.|+.++.||..+++.+..+
T Consensus 219 ----Ks~k~P~n-V~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~~-------------------------- 262 (334)
T KOG0278|consen 219 ----KSYKMPCN-VESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGSY-------------------------- 262 (334)
T ss_pred ----eeccCccc-ccccccc-----CCCceEEecCcceEEEEEeccCCceeeec--------------------------
Confidence 22222222 3344444 88899999999999999999988764321
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.++|.++|.|+.|||||... ++||.||++|+|-..
T Consensus 263 ----------------------------nkgh~gpVhcVrFSPdGE~y-AsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 263 ----------------------------NKGHFGPVHCVRFSPDGELY-ASGSEDGTIRLWQTT 297 (334)
T ss_pred ----------------------------ccCCCCceEEEEECCCCcee-eccCCCceEEEEEec
Confidence 12899999999999999999 999999999999764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=231.04 Aligned_cols=236 Identities=19% Similarity=0.322 Sum_probs=207.2
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.| ..++|+..|++||+|+.|=.+.+||..+ .+++....+|...+.++.|-|.
T Consensus 152 sv--~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~------------------------- 204 (406)
T KOG0295|consen 152 SV--FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL------------------------- 204 (406)
T ss_pred ce--eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec-------------------------
Confidence 46 4559999999999999998899999876 4556666666555544444443
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.+|++++.|.+|+.|++.+|-++.++. +|+..|..+..+.||..+++++.|.++++|-+.++++...++.|+.+|.
T Consensus 205 --gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 205 --GDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred --CCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence 7889999999999999999999997775 7999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC---------------CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 164 CMAVSSD---------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 164 ~l~~~p~---------------~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
|++|.|. +.++++++ ++|++||+.++.++.++.+|...|..++|+|.|+||++++ +|+++++
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktlrv 360 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTLRV 360 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcEEE
Confidence 9999863 24788888 8999999999999999999999999999999999999998 7999999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
||+.+.+ |......+..++.+..|. .+..++++|+-|..+++|..
T Consensus 361 wdl~~~~-----cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNLQ-----CMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccce-----eeeccCCCcceeEEEecC-----CCCceEEeccccceeeeeec
Confidence 9999987 666777788888999987 66679999999999999964
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=237.02 Aligned_cols=240 Identities=15% Similarity=0.206 Sum_probs=199.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++||.+ .|+++|.++++|+.+|.|++|+..- ..++.+. .|....+.++++.|.
T Consensus 138 Ds~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~-----------------ahh~eaIRdlafSpn------ 191 (464)
T KOG0284|consen 138 DSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQ-----------------AHHAEAIRDLAFSPN------ 191 (464)
T ss_pred cccceeE--EEccCCCEEEEcCCCceEEecccch-hhhHHhh-----------------HhhhhhhheeccCCC------
Confidence 4789666 9999999999999999999998753 3333333 333445556666654
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
...+++|+.||+|+|||....+....+ .+|.-.|.++.|+|....++++|.|..|++||.+++.|+.++..|+..|
T Consensus 192 ---DskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntV 267 (464)
T KOG0284|consen 192 ---DSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTV 267 (464)
T ss_pred ---CceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceE
Confidence 455999999999999999887765344 6899999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
..+.|+|++++|++++ ..+++||+++.+.+.++.+|...|+++.|+|-..-|++++..||.|..|.+...++. ..
T Consensus 268 l~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~~ 344 (464)
T KOG0284|consen 268 LAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---GE 344 (464)
T ss_pred EEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc---cC
Confidence 9999999999999999 799999999888899999999999999999977666666657999999999855533 23
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
....|...+.. +.+. |=|..|++|+.|.++++|.-
T Consensus 345 i~~AHd~~iws-l~~h-----PlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 345 IPPAHDGEIWS-LAYH-----PLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCcccccceee-eecc-----ccceeEeecCCCcceeeecc
Confidence 33445555544 4444 89999999999999999963
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=243.60 Aligned_cols=316 Identities=15% Similarity=0.145 Sum_probs=219.1
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+| .|++-+|+.-+||.|..||.|+||+..++....++.+|...++.+.|...
T Consensus 67 ev--t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~-------------------------- 118 (888)
T KOG0306|consen 67 EV--TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI-------------------------- 118 (888)
T ss_pred eE--EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEccc--------------------------
Confidence 56 44577788889999999999999999998888888877665554444433
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC---
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--- 161 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--- 161 (630)
|..|++|+.|+.|.+||+-......++ .||...|+.+-|..+.++++++|.|+.|++||+.+..|..+.-.|.+.
T Consensus 119 -G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~ 196 (888)
T KOG0306|consen 119 -GTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA 196 (888)
T ss_pred -CceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence 888999999999999999887777666 489999999999987889999999999999999987776655444444
Q ss_pred --------------------------------------------------------------------------------
Q 006808 162 -------------------------------------------------------------------------------- 161 (630)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (630)
T Consensus 197 l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~ 276 (888)
T KOG0306|consen 197 LVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK 276 (888)
T ss_pred EEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006808 162 -------------------------------------------------------------------------------- 161 (630)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (630)
T Consensus 277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~ 356 (888)
T KOG0306|consen 277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK 356 (888)
T ss_pred HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence
Q ss_pred -------------------eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 162 -------------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 162 -------------------v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
|.+++++.+...+++|+ +.+++|+..+.++++++... .+.+..|-|.+++++++. ..
T Consensus 357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~-k~ 433 (888)
T KOG0306|consen 357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGT-KN 433 (888)
T ss_pred CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEec-cC
Confidence 44445554444444444 45555555555555554422 444455555555555444 35
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc------------
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN------------ 289 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------------ 289 (630)
|.+.+||+.+.... .....+...+..+... ||+..+++|+.|.+|++||..-......
T Consensus 434 Gel~vfdlaS~~l~-----Eti~AHdgaIWsi~~~-----pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 434 GELQVFDLASASLV-----ETIRAHDGAIWSISLS-----PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred CceEEEEeehhhhh-----hhhhccccceeeeeec-----CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 55555555444321 1122222333334444 8999999999999999999643222110
Q ss_pred ---cCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeec
Q 006808 290 ---TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM 366 (630)
Q Consensus 290 ---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~ 366 (630)
......++. ++|+++ +++++-.|+++++|-... ...|-++.||.=+|+|+.+|||+.++ +
T Consensus 504 tLel~ddvL~v~----~Spdgk----~LaVsLLdnTVkVyflDt--------lKFflsLYGHkLPV~smDIS~DSkli-v 566 (888)
T KOG0306|consen 504 TLELEDDVLCVS----VSPDGK----LLAVSLLDNTVKVYFLDT--------LKFFLSLYGHKLPVLSMDISPDSKLI-V 566 (888)
T ss_pred EEeccccEEEEE----EcCCCc----EEEEEeccCeEEEEEecc--------eeeeeeecccccceeEEeccCCcCeE-E
Confidence 111122333 789998 899999988776643222 22344667999999999999999999 9
Q ss_pred cccceeccccceec
Q 006808 367 SQSLLKSKRGRYVQ 380 (630)
Q Consensus 367 s~s~d~~~~~w~~~ 380 (630)
|||.|+++++|-+.
T Consensus 567 TgSADKnVKiWGLd 580 (888)
T KOG0306|consen 567 TGSADKNVKIWGLD 580 (888)
T ss_pred eccCCCceEEeccc
Confidence 99999999999764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=213.65 Aligned_cols=250 Identities=16% Similarity=0.189 Sum_probs=199.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+.| .++.|+++|.+|++++.|.++++||..+|++++++..+...+....|...
T Consensus 14 ~~~i--~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~------------------------ 67 (311)
T KOG1446|consen 14 NGKI--NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH------------------------ 67 (311)
T ss_pred CCce--eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC------------------------
Confidence 4577 55599999999999999999999999999999988766555544444332
Q ss_pred ccCCcEEEEEeC--CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
...++.++. |.+|+..++.+++.+ +++.||...|++++.+|-+..|++++.|++|++||++..++...+.....
T Consensus 68 ---~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 68 ---SNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred ---CceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 333455554 677999999999998 55679999999999999999999999999999999999988877775555
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCC--ceeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~--~~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+ .++|.|.|-++|++. +.|++||++.. .+..+|. +.....+.+.|||+|++++.+. ..+.+++.|.-.+.
T Consensus 144 p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 144 P--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGT 220 (311)
T ss_pred c--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCc
Confidence 4 478999999999998 48999999874 3455554 2356789999999999999987 58899999999887
Q ss_pred cccceeeeeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 234 KQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.. ..+..... ......++|. ||++++++|+.||+|++|++++|..+......
T Consensus 221 ~~---~tfs~~~~~~~~~~~a~ft-----Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 221 VK---STFSGYPNAGNLPLSATFT-----PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred Ee---eeEeeccCCCCcceeEEEC-----CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 54 33333222 2233455665 99999999999999999999999888766653
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=243.02 Aligned_cols=271 Identities=18% Similarity=0.252 Sum_probs=222.8
Q ss_pred EE-CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SF-SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~f-s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
+| .|+.++||.+++.+.+|+|++.+..+. .+.+|...+.++. .|.. +.+|+
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~-----------------~~~~----------g~lla 381 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLD-----------------VWSS----------GDLLA 381 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeee-----------------eccc----------CcEEE
Confidence 54 677899999999999999999888776 5665555444322 1222 67899
Q ss_pred EEeCCCeEEEEEccCCeee---EEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCce---------eEEeec
Q 006808 91 LGTGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSL---------LGKFRA 157 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~---~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~---------~~~~~~ 157 (630)
+|+.|.++++|.+..+... .....+|+..|.+++++..+ .+|+++|.|+++++|++...+. ..+...
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 9999999999988544321 23336899999999997754 4689999999999999976221 113356
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|...|+|++++|+.+++|+|+ .+.++|++...+...++.||...|.++.|+|..+.+++++ .|++|+||.+.+..
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~fS-- 538 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTFS-- 538 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccce--
Confidence 889999999999999999999 8999999999999999999999999999999999999887 69999999999876
Q ss_pred cceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhh
Q 006808 236 SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 236 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (630)
|+.++. |...+..+.+. .+|..|++++.||.|++|++++...+++.
T Consensus 539 ---ClkT~eGH~~aVlra~F~------~~~~qliS~~adGliKlWnikt~eC~~tl------------------------ 585 (775)
T KOG0319|consen 539 ---CLKTFEGHTSAVLRASFI------RNGKQLISAGADGLIKLWNIKTNECEMTL------------------------ 585 (775)
T ss_pred ---eeeeecCccceeEeeeee------eCCcEEEeccCCCcEEEEeccchhhhhhh------------------------
Confidence 777777 66667776666 58899999999999999999877664332
Q ss_pred hhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
-.|.+.|+.++.+|++..+ +||+.|+.+.+|.
T Consensus 586 -------------------------------D~H~DrvWaL~~~~~~~~~-~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 586 -------------------------------DAHNDRVWALSVSPLLDMF-VTGGGDGRIIFWK 617 (775)
T ss_pred -------------------------------hhccceeEEEeecCcccee-EecCCCeEEEEee
Confidence 2788899999999999988 9999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=245.46 Aligned_cols=251 Identities=16% Similarity=0.228 Sum_probs=215.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
|+.|+.+ +|+|...+++++-..|.|.+||..=+.++..|..|.+++..+.|.|.
T Consensus 9 SsRvKgl--sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~------------------------ 62 (1202)
T KOG0292|consen 9 SSRVKGL--SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT------------------------ 62 (1202)
T ss_pred cccccce--ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC------------------------
Confidence 5677777 99999999999999999999999999999999999999998888887
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.++++|+.|..|++|+..+.+++.++. ||-..|+.+.|++.-.+|+++|.|.+|+||+..+++++..+.+|...|
T Consensus 63 ---qplFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV 138 (1202)
T KOG0292|consen 63 ---QPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV 138 (1202)
T ss_pred ---CCeEEecCCccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence 7789999999999999999999998876 899999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCc-----------------------------eeeEeecCCCCeEEEEEeeCC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------------------------KMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-----------------------------~~~~~~~h~~~v~~l~~sp~~ 211 (630)
.|..|+|....+++++ .+|++||+..-+ ....+.||...|+-++|+|.-
T Consensus 139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl 218 (1202)
T KOG0292|consen 139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL 218 (1202)
T ss_pred EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence 9999999999999999 899999984210 012356899999999999999
Q ss_pred cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..+++++ +|+.|++|.+...+.- .+-+...+...++++.|. |...+|++.++|+.|+|||+...+.+.++.
T Consensus 219 pliVSG~-DDRqVKlWrmnetKaW---EvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 219 PLIVSGA-DDRQVKLWRMNETKAW---EVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred ceEEecC-CcceeeEEEeccccce---eehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccceeeee
Confidence 9998887 7999999998876532 122222333344555555 888999999999999999998877777664
Q ss_pred c
Q 006808 292 A 292 (630)
Q Consensus 292 ~ 292 (630)
.
T Consensus 290 r 290 (1202)
T KOG0292|consen 290 R 290 (1202)
T ss_pred c
Confidence 3
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=209.93 Aligned_cols=277 Identities=13% Similarity=0.118 Sum_probs=214.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+.+|++|+.|....+|-..+|+.+.++ .||++.|+|+....+.+++++|+.|.++++||+.+|+++.+++ ...+|..+
T Consensus 22 GDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~ 99 (327)
T KOG0643|consen 22 GDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV 99 (327)
T ss_pred CcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE
Confidence 899999999999999999999998776 5899999999999999999999999999999999999999998 46789999
Q ss_pred EEccCCCEEEEeC-------CeEEEEECC-------CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 166 AVSSDGKMLATAA-------GQLKTFNCS-------DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 166 ~~~p~~~~l~~~~-------g~i~lwd~~-------~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.|+++|++++.+. +.|.++|++ +..++..+..+...++.+.|.|-+++++++. .||.|.+||+++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~ 178 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-EDGSISIYDART 178 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-CCCcEEEEEccc
Confidence 9999999887765 589999998 4456777888889999999999999999988 699999999999
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchh
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
+... +.....+...+.-+.++ |+..++++++.|.+.++||..+...+++.....+.-+ .. ++|...
T Consensus 179 g~~~----v~s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~-aa-isP~~d--- 244 (327)
T KOG0643|consen 179 GKEL----VDSDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNT-AA-ISPLLD--- 244 (327)
T ss_pred Ccee----eechhhhcccccccccc-----CCcceEEecccCccceeeeccceeeEEEeeecccccc-ee-cccccc---
Confidence 8643 22323333355566666 9999999999999999999999988877654333222 22 234322
Q ss_pred hhhhhcccccc-ccCCceeEE----EEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 312 AAIFAAKLQDI-VKPASVHTF----VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 312 ~~i~~~~~d~~-~~~~~~~~~----~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
..|+.|+.+.. +..-..+.- -.|.......+..+++|.+++++++|+|||+.. +||++|+-+|+.-+.
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSGGEDGYVRLHHFD 317 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccCCCCceEEEEEec
Confidence 13344433321 000000000 001123344566888999999999999999999 999999999998664
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=225.32 Aligned_cols=236 Identities=15% Similarity=0.298 Sum_probs=194.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++.| +|+.|. .+.+++||.|.+|+|||+++|+++.++-+|...+..+.|+
T Consensus 237 tGSV--LCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-------------------------- 286 (499)
T KOG0281|consen 237 TGSV--LCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-------------------------- 286 (499)
T ss_pred CCcE--Eeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--------------------------
Confidence 5677 866764 5599999999999999999999999988777666555444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.++++++.|.++.+||+..... ..+++.||...|+.+.|+ .+++++++.|.+|++|++.++++++++.+|..
T Consensus 287 ---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkR 361 (499)
T KOG0281|consen 287 ---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR 361 (499)
T ss_pred ---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccc
Confidence 66899999999999999976542 345567999999999994 56999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc---
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--- 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~--- 235 (630)
.|.|+.+ .++++++|+ .+|++||+..|.+++.+.||..-|.++.|. .+.+++++ .||+|++||+..+...
T Consensus 362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 362 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccceEEEEecccccCCccc
Confidence 9998877 478999998 899999999999999999999999999996 57788888 6999999999876533
Q ss_pred -cceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 236 -SASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 236 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
...|...+ .|.+.+.... | |...|++++.|.+|.|||..++-.
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQ-F-------D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQ-F-------DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccchHHHhhhhccceeEEEe-e-------cceEEEeccCCCeEEEEEcCCCCc
Confidence 12233333 2444444433 3 568899999999999999877644
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=219.41 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=204.9
Q ss_pred ccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCc
Q 006808 61 REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM 140 (630)
Q Consensus 61 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 140 (630)
.||++ -+.|++..|. +.++++|+.|++++|||+.+|+...++ .||-..|..+++++-..++++++.|+.
T Consensus 148 ~gHlg-WVr~vavdP~---------n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 148 SGHLG-WVRSVAVDPG---------NEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred hhccc-eEEEEeeCCC---------ceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCe
Confidence 35654 4556666554 789999999999999999999998666 489999999999999999999999999
Q ss_pred EEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
|+.||+...+.++.+.+|-..|+|++.+|.-..|++|+ .++++||+++...+..+.||..+|.++.+.|....+++++
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 99999999999999999999999999999999999998 7999999999999999999999999999999888999987
Q ss_pred eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (630)
.|++|++||++.++.. ..+.|+...+.+++.. |....+++++.| .|+-|++..|..+..
T Consensus 297 -~D~tvrlWDl~agkt~-----~tlt~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f~~n--------- 355 (460)
T KOG0285|consen 297 -HDSTVRLWDLRAGKTM-----ITLTHHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEFLQN--------- 355 (460)
T ss_pred -CCceEEEeeeccCcee-----EeeecccceeeEEecC-----CchhhhhccCCc-cceeccCCccchhhc---------
Confidence 6999999999998743 3445667777788877 888888888886 678888765544322
Q ss_pred ccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+.+|..-+++++...||-+ ++|+..+++.+|+
T Consensus 356 ----------------------------------------------lsgh~~iintl~~nsD~v~--~~G~dng~~~fwd 387 (460)
T KOG0285|consen 356 ----------------------------------------------LSGHNAIINTLSVNSDGVL--VSGGDNGSIMFWD 387 (460)
T ss_pred ----------------------------------------------cccccceeeeeeeccCceE--EEcCCceEEEEEe
Confidence 2356666777877778765 6888899999998
Q ss_pred eccc
Q 006808 379 VQNR 382 (630)
Q Consensus 379 ~~~~ 382 (630)
-+++
T Consensus 388 wksg 391 (460)
T KOG0285|consen 388 WKSG 391 (460)
T ss_pred cCcC
Confidence 7654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-27 Score=243.19 Aligned_cols=237 Identities=24% Similarity=0.379 Sum_probs=197.7
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEEC-CCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.|+++ +|+|+|+++++|+.|++|+|||+ ..+..+.++++|...+.++.|++.
T Consensus 205 ~v~~~--~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------------------------- 257 (456)
T KOG0266|consen 205 GVSDV--AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------------------------- 257 (456)
T ss_pred ceeee--EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC-------------------------
Confidence 56444 99999999999999999999999 666899999988877776666665
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEeecCCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKG 161 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~ 161 (630)
++++++|+.|++|+|||+.++++...+ .+|..+|++++|+++|++|++++.|+.|++||+.++. +...+..+...
T Consensus 258 --g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 258 --GNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred --CCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence 788999999999999999999988666 5899999999999999999999999999999999999 56777766655
Q ss_pred --eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCC---eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 162 --ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA---VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 162 --v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~---v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
++++.|+|++.+++++. +.+++||+..+..+..+.+|... +.+..+++.+.++++++ .|+.|++|++.++..
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGGI 413 (456)
T ss_pred CceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccch
Confidence 99999999999999998 69999999999999999999875 33445577899998887 799999999998653
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYG 281 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~ 281 (630)
. +.. ..|....+....++ |...++++++ .|+.+++|..
T Consensus 414 ~---~~l-~~h~~~~~~~~~~~-----~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 414 L---QRL-EGHSKAAVSDLSSH-----PTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred h---hhh-cCCCCCceeccccC-----CCcCeeeecCcCCCceEEEecC
Confidence 3 222 22313333444444 7889999988 6889999975
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-27 Score=238.94 Aligned_cols=259 Identities=15% Similarity=0.198 Sum_probs=191.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE---------------------------Eeccc-------cc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---------------------------EFADI-------AS 48 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~---------------------------~~~~~-------~~ 48 (630)
.+.| +++.||+||+|||+||.||.|+||.+...+... ...+. ..
T Consensus 267 ~gaI--w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 267 KGAI--WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred CCcE--EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4678 888999999999999999999999886511100 00000 00
Q ss_pred ------ccccccccccc---cccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC
Q 006808 49 ------TETTSLYGNRL---EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG 119 (630)
Q Consensus 49 ------~~~~~~~s~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~ 119 (630)
......|++.. ..||.. ++..+.|.. +++|++++.|.+|++|++....++..+ .|...
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hndf 411 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF--SHNDF 411 (712)
T ss_pred CccccCCCccccccccchhhhhccch-hheeccccc----------CCeeEeccccccEEeecCCCcceeeEE--ecCCe
Confidence 00111222211 135543 677788865 789999999999999999999999777 59999
Q ss_pred EEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee
Q 006808 120 VSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS 196 (630)
Q Consensus 120 v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~ 196 (630)
|+|++|+| |.++|++|+.||.|+||++...+.+.-.. ...-|++++|.|+|++.++|+ |.+++|+....+....+.
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999999 88899999999999999998776654444 457899999999999999999 999999998877655442
Q ss_pred c--C------CCCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEE
Q 006808 197 G--H------PGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (630)
Q Consensus 197 ~--h------~~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (630)
- | ...|+++.|.|... .+++++ .|..|+|+|.+..... +.+.-.+.......+.|. .||++|
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~Asfs-----~Dgk~I 561 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLV---HKFKGFRNTSSQISASFS-----SDGKHI 561 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhh---hhhcccccCCcceeeeEc-----cCCCEE
Confidence 1 1 22799999987544 355555 5999999999776544 333322333333344454 799999
Q ss_pred EEEecCCcEEEEEcCCccc
Q 006808 268 LAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 268 ~s~s~dg~i~iwd~~~~~~ 286 (630)
++++.|..|+||+......
T Consensus 562 Vs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred EEeecCceEEEEeCCCCcc
Confidence 9999999999999865543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=201.23 Aligned_cols=270 Identities=14% Similarity=0.215 Sum_probs=202.1
Q ss_pred eEeEECCC-CCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 9 ILTSFSPA-LDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 9 ~~~~fs~d-g~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
..++|+|- |..||+||.|+.||||++..+. +...+. .+| ...+..++|.|.
T Consensus 18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld----------------~~h-krsVRsvAwsp~-------- 72 (312)
T KOG0645|consen 18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD----------------DGH-KRSVRSVAWSPH-------- 72 (312)
T ss_pred EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc----------------ccc-hheeeeeeecCC--------
Confidence 55699998 9999999999999999987533 332222 133 235566777665
Q ss_pred CCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---ceeEEeecCC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG---SLLGKFRAST 159 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~ 159 (630)
+++|++|+.|.++.||.-..++ ++ ..+.||...|.|++|+++|++|++|+.|+.|.||.+..+ .+...++.|.
T Consensus 73 -g~~La~aSFD~t~~Iw~k~~~efecv-~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 73 -GRYLASASFDATVVIWKKEDGEFECV-ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred -CcEEEEeeccceEEEeecCCCceeEE-eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 8899999999999999877554 44 445799999999999999999999999999999998743 6788899999
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECC---CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCS---DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~---~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
..|..+.|+|...+|++++ ++|++|.-. ...+.+++.+|...|.+++|+|.|..|++++ +|++++||.....-
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s-dD~tv~Iw~~~~~~- 228 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS-DDGTVSIWRLYTDL- 228 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec-CCcceEeeeeccCc-
Confidence 9999999999999999999 899999765 3468899999999999999999999999887 79999999876431
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc------cccc-ccCceeEEeeccCCCcccc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI------EELR-NTKATKILSSSEDVNSKSQ 307 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~-~~~~~~~~~~~~~~~~~~~ 307 (630)
...|......+.+. ...|++++.|+.|++|.-... +.+. ....+...+.+.. +.|..
T Consensus 229 -------~~~~sr~~Y~v~W~--------~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~-w~p~~ 292 (312)
T KOG0645|consen 229 -------SGMHSRALYDVPWD--------NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQ-WNPKV 292 (312)
T ss_pred -------chhcccceEeeeec--------ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEE-EcCCC
Confidence 22233333333332 368999999999999975432 1111 1111111222111 34432
Q ss_pred cchhhhhhhccccccccCC
Q 006808 308 KSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~ 326 (630)
. ..+++++.||.++++
T Consensus 293 ~---~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 293 S---NRLASGGDDGIVNFW 308 (312)
T ss_pred C---CceeecCCCceEEEE
Confidence 2 278888888877653
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-28 Score=216.58 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=210.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+|+|+- +|||||.++|+||.|..|+|.|+...--.....
T Consensus 112 K~~cR~a--afs~DG~lvATGsaD~SIKildvermlaks~~~-------------------------------------- 151 (430)
T KOG0640|consen 112 KSPCRAA--AFSPDGSLVATGSADASIKILDVERMLAKSKPK-------------------------------------- 151 (430)
T ss_pred ccceeee--eeCCCCcEEEccCCcceEEEeehhhhhhhcchh--------------------------------------
Confidence 3577444 999999999999999999999986321110000
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec--CCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~ 160 (630)
-+..+. .+.+-.+.+.+..|...|+++.|+|....|++|+.|++|++||+......+.++. ...
T Consensus 152 -----em~~~~---------~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~ 217 (430)
T KOG0640|consen 152 -----EMISGD---------TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE 217 (430)
T ss_pred -----hhccCC---------cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccc
Confidence 000000 0111122233346999999999999999999999999999999875433333322 345
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe---ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+|.++.|+|.|.+|++|. .++++||+.+.++.... .+|++.|+++.+++.++..++++ .||.|++||--+++..
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNRCV 296 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHHHH
Confidence 899999999999999998 69999999999876554 47899999999999999888877 7999999998777633
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee----EEeeccCCCcccccchh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK----ILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 311 (630)
..+...|.+..+....|. .+|++|++.+.|..+++|.+.+++.+....... .......+|.....
T Consensus 297 ---~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd--- 365 (430)
T KOG0640|consen 297 ---RTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED--- 365 (430)
T ss_pred ---HHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc---
Confidence 334445788888888887 899999999999999999999998887654331 11111111211111
Q ss_pred hhhhhccccccccCCceeEEEEEcCccC-ceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLK-PSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+++.-... .+. +..|..... ..----.+|.+.+.++.-||.+..+ ++||.|...|+|-.
T Consensus 366 -yVl~pDEa------s~s-lcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F-mTcsdD~raRFWyr 425 (430)
T KOG0640|consen 366 -YVLFPDEA------SNS-LCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF-MTCSDDFRARFWYR 425 (430)
T ss_pred -eEEccccc------cCc-eeeccccchhhhhhcccCCCCCceEEEeCCCCCce-eeecccceeeeeee
Confidence 22111110 000 111111111 1111123799999999999999998 99999999999965
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=202.78 Aligned_cols=246 Identities=15% Similarity=0.270 Sum_probs=200.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++|.++ +|+.+|..||+|+.|++++||++........+. .+||.+ .+-.++|.+.+
T Consensus 20 ~~~v~Sv--~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~---------------~~gh~~-svdql~w~~~~----- 76 (313)
T KOG1407|consen 20 VQKVHSV--AWNCDGTKLASGSFDKTVSVWNLERDRFRKELV---------------YRGHTD-SVDQLCWDPKH----- 76 (313)
T ss_pred hhcceEE--EEcccCceeeecccCCceEEEEecchhhhhhhc---------------ccCCCc-chhhheeCCCC-----
Confidence 3567555 999999999999999999999998775544332 123322 34456777766
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
..++++++++.+|++||++.+++...+. ..+.-.-+.|+|+|++++.++.|..|...|.++.+.....+ ....+
T Consensus 77 ---~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ 150 (313)
T KOG1407|consen 77 ---PDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEV 150 (313)
T ss_pred ---CcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-cccee
Confidence 5679999999999999999999987764 44556678999999999999999999999999888877655 34467
Q ss_pred EEEEEccCCCEEE-EeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLA-TAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~-~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.-++|+.++.+++ +.+ |.|.|.....-+++.+++.|+....||.|+|+|+||++++ .|-.+.+||+...- |.
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELi-----C~ 224 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELI-----CE 224 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhh-----hh
Confidence 7788887666544 445 8999999999999999999999999999999999999998 59999999997753 55
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
..+......++.+.|+ .+|++||++++|-.|-|=++++|..+.
T Consensus 225 R~isRldwpVRTlSFS-----~dg~~lASaSEDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFS-----HDGRMLASASEDHFIDIAEVETGDRVW 267 (313)
T ss_pred eeeccccCceEEEEec-----cCcceeeccCccceEEeEecccCCeEE
Confidence 5666677778888887 899999999999999888888887654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=204.49 Aligned_cols=283 Identities=13% Similarity=0.151 Sum_probs=215.9
Q ss_pred eeEeEECCC-CCEEEEe--e-----CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 8 DILTSFSPA-LDYFAIC--S-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 8 ~~~~~fs~d-g~~las~--s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
..++.|||= .++||.+ . ..|++.|.++..++-+.++... ........++|++..
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~----------------d~~D~LfdV~Wse~~-- 72 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY----------------DTEDGLFDVAWSENH-- 72 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee----------------ecccceeEeeecCCC--
Confidence 345699992 2333332 1 3688999998655544444311 112245578888776
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
.+.++++++||++++||..........++.|...|.++.|++ .+..++++|.|++|++|+...++.+++|.+|
T Consensus 73 ------e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh 146 (311)
T KOG0277|consen 73 ------ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH 146 (311)
T ss_pred ------cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence 778999999999999997665555566678999999999998 5556888999999999999999999999999
Q ss_pred CCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 159 ~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
...|+..+|+| .+..+++++ +++++||++.......+..|...|.++.|+.-..++++++.-|+.|++||++.-+..
T Consensus 147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP 226 (311)
T ss_pred ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence 99999999999 567888887 899999998755445588999999999999866655555557999999999987744
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCC-CCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (630)
++.+..+...++.+.|+ |. ...|++++.|-+++|||...+....
T Consensus 227 ----l~eL~gh~~AVRkvk~S-----ph~~~lLaSasYDmT~riw~~~~~ds~~-------------------------- 271 (311)
T KOG0277|consen 227 ----LFELNGHGLAVRKVKFS-----PHHASLLASASYDMTVRIWDPERQDSAI-------------------------- 271 (311)
T ss_pred ----ceeecCCceEEEEEecC-----cchhhHhhhccccceEEecccccchhhh--------------------------
Confidence 55666677777777776 54 4678899999999999975332211
Q ss_pred hhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCC-cceeeccccceeccccce
Q 006808 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD-GVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~~s~s~d~~~~~w~ 378 (630)
+++.-|+..|..+.||+- +.++ ++.++|.++++|+
T Consensus 272 ----------------------------e~~~~HtEFv~g~Dws~~~~~~v-As~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 272 ----------------------------ETVDHHTEFVCGLDWSLFDPGQV-ASTGWDELLYVWN 307 (311)
T ss_pred ----------------------------hhhhccceEEeccccccccCcee-eecccccceeeec
Confidence 122257777888888874 4466 9999999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=233.59 Aligned_cols=255 Identities=15% Similarity=0.151 Sum_probs=194.7
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.+++++..+++++.+.....|+...+..+..+.... ... -.+.+..||. ..+.++.|.|.+ +.+|++
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-~~~---~~~~~l~GH~-~~V~~v~fsP~d--------~~~LaS 93 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-KLA---SNPPILLGQE-GPIIDVAFNPFD--------PQKLFT 93 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccc-cCC---CCCceEeCCC-CCEEEEEEcCCC--------CCEEEE
Confidence 677888888888888888999876654332222111 000 0111233664 478899999865 678999
Q ss_pred EeCCCeEEEEEccCCe-------eeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 92 GTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~-------~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
|+.||.|++||+.++. .+ ..+.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+..|...|.
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l-~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPI-VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcce-EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 9999999999997653 23 2345899999999999975 6899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCC-eEEEEEeeCCcEEEEEee---CCCeEEEEEcCCCccccc
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSA 237 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~~~~~---~d~~i~vwd~~~~~~~~~ 237 (630)
+++|+|+|.+|++++ +.|++||+++++.+.++.+|.+. +..+.|.+++..+++++. .|+.|++||++.....
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-- 250 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-- 250 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc--
Confidence 999999999999998 89999999999999899889765 456789998888887652 4789999999875432
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCccccc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR 288 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~ 288 (630)
...... +....+....|+ +++.+|++++ .||.|++||+.++..+.
T Consensus 251 ~~~~~~-d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 251 YSTVDL-DQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred eeEecc-CCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 111111 222334445565 8999998887 49999999998876543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=227.08 Aligned_cols=243 Identities=20% Similarity=0.260 Sum_probs=194.4
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
.++++.|+|.. +.+|++|+.|+.|+||++.. +.++.+ +.+|..+|.+++|+++|..|+++|.|+.+++||
T Consensus 216 gvsai~~fp~~--------~hLlLS~gmD~~vklW~vy~~~~~lrt-f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 216 GVSAIQWFPKK--------GHLLLSGGMDGLVKLWNVYDDRRCLRT-FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccchhhhccce--------eeEEEecCCCceEEEEEEecCcceehh-hhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 56677777754 78999999999999999987 566644 468999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 146 PLTGSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
+++|+++..|.. ...++|+.|+|++ +.+++|+ +.|+.||+++++.++.+..|-+.|..+.|-++|+++++++ +|+
T Consensus 287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddk 364 (503)
T KOG0282|consen 287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDK 364 (503)
T ss_pred cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCc
Confidence 999999999984 5578999999988 6666666 8999999999999999999999999999999999999987 799
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCC
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (630)
.++||+.+.+-.. .+..........++... |++.++++-+.|+.|.+|.+...-.+...
T Consensus 365 s~riWe~~~~v~i----k~i~~~~~hsmP~~~~~-----P~~~~~~aQs~dN~i~ifs~~~~~r~nkk------------ 423 (503)
T KOG0282|consen 365 SVRIWENRIPVPI----KNIADPEMHTMPCLTLH-----PNGKWFAAQSMDNYIAIFSTVPPFRLNKK------------ 423 (503)
T ss_pred cEEEEEcCCCccc----hhhcchhhccCcceecC-----CCCCeehhhccCceEEEEecccccccCHh------------
Confidence 9999999887643 12222233333444444 99999999999999999986332211100
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.++-|... .+.-..+.|||||.+| +||+.||.+.+|+-.
T Consensus 424 ----------K~feGh~v----------------------------aGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 424 ----------KRFEGHSV----------------------------AGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK 462 (503)
T ss_pred ----------hhhcceec----------------------------cCceeeEEEcCCCCeE-EeecCCccEEEeech
Confidence 11111110 1124678999999999 999999999999875
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=198.78 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=211.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+++.++|+.+.+|++|++..+.++.++ .+|...|..++.+.|+..|++|+.|..|.+||+.+|+..+.|.+|.+.|..+
T Consensus 29 GnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV 107 (307)
T KOG0316|consen 29 GNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV 107 (307)
T ss_pred CCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence 889999999999999999999999777 4899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCC--ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+|+.+...+++|+ .++++||.++. ++++.+......|.++..+ +..+++++ -||+++.||++.++..
T Consensus 108 ~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS-~DGtvRtydiR~G~l~------ 178 (307)
T KOG0316|consen 108 RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS-VDGTVRTYDIRKGTLS------ 178 (307)
T ss_pred EecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec-cCCcEEEEEeecceee------
Confidence 9999999999999 89999999875 5788887778889998876 44566555 7999999999998643
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEE---eeccCCCcccccchhhhhhhcc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL---SSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
...-+..+++..|+ ++++..++++.|+.+++.|-.+|+.++..+..+.. .-|. +..... .+++|+
T Consensus 179 -sDy~g~pit~vs~s-----~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~--l~qsdt----hV~sgS 246 (307)
T KOG0316|consen 179 -SDYFGHPITSVSFS-----KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC--LNQSDT----HVFSGS 246 (307)
T ss_pred -hhhcCCcceeEEec-----CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee--ecccce----eEEecc
Confidence 23344567788887 99999999999999999999999998876665422 1111 233332 789999
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCC-cEEEeecCCcceeeccccceeccccceecc
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE-DINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.||.++.|+ ......+..+..|... |..+.++|.-.-+ +++. ++....|...+
T Consensus 247 EDG~Vy~wd--------Lvd~~~~sk~~~~~~v~v~dl~~hp~~~~f-~~A~-~~~~~~~~~~~ 300 (307)
T KOG0316|consen 247 EDGKVYFWD--------LVDETQISKLSVVSTVIVTDLSCHPTMDDF-ITAT-GHGDLFWYQEN 300 (307)
T ss_pred CCceEEEEE--------eccceeeeeeccCCceeEEeeecccCccce-eEec-CCceeceeehh
Confidence 988777654 2223334455566666 7899999987655 4444 56666776543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=203.86 Aligned_cols=237 Identities=14% Similarity=0.213 Sum_probs=200.2
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+++| +-+.|.+|++.+++||.|.+|+.||..+|+++..+++|..-++.+. |.
T Consensus 89 HsgAV--M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~----------------------- 141 (338)
T KOG0265|consen 89 HSGAV--MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS----------------------- 141 (338)
T ss_pred cccee--EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc-----------------------
Confidence 36788 5569999999999999999999999999999999987776555332 11
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.+..++.+++.||++++||+++...+.++. ....++++.|..++..+++|+-|+.|++||++.+....++.+|..+
T Consensus 142 -rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 142 -RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT 218 (338)
T ss_pred -ccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence 1136678899999999999999988876653 4578999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCC----ceeeEeecCCC----CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPG----AVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~----~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
|+.+..+|+|.++.+-+ .++++||++.. +++..+.+|.. ....++|+|+++++-+++ .|+.+++||...
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags-~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-ADRFVYVWDTTS 297 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc-ccceEEEeeccc
Confidence 99999999999999988 89999999753 45777777643 356779999999887776 599999999887
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
.. +++.++.+...+..+.|. |....|.+++.|.+|++=
T Consensus 298 r~-----~lyklpGh~gsvn~~~Fh-----p~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 298 RR-----ILYKLPGHYGSVNEVDFH-----PTEPIILSCSSDKTIYLG 335 (338)
T ss_pred cc-----EEEEcCCcceeEEEeeec-----CCCcEEEEeccCceeEee
Confidence 55 566777666677777777 899999999999999863
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=225.28 Aligned_cols=236 Identities=14% Similarity=0.169 Sum_probs=195.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.-|||+- .|-+--+++++|+.|..||||+..+++.++.|..|...+.++...|.
T Consensus 55 ~~PvRa~--kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt------------------------ 108 (794)
T KOG0276|consen 55 EVPVRAA--KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT------------------------ 108 (794)
T ss_pred ccchhhh--eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC------------------------
Confidence 3578555 89888899999999999999999999999999988877766655555
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
..++++++.|-.|++||...+-.....+.||...|.+++|+| |.+.|++++-|++|++|.+.+..+..++.+|...
T Consensus 109 ---~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG 185 (794)
T KOG0276|consen 109 ---LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG 185 (794)
T ss_pred ---CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC
Confidence 557899999999999999988666677789999999999999 7778999999999999999999999999999999
Q ss_pred eEEEEEccCC--CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 162 ISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 162 v~~l~~~p~~--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
|.|+++-|.| .+|++|+ .+|+|||.++..|++++.||...|..+.|+|.-..+++++ .||+++||+..+-+..
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~lE-- 262 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKLE-- 262 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceehh--
Confidence 9999998844 6899998 7999999999999999999999999999999999988887 8999999998886644
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
..+..+ -..+ .++... +.+..++.|...|.+.+
T Consensus 263 -~tLn~g-leRv-W~I~~~-----k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 -KTLNYG-LERV-WCIAAH-----KGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -hhhhcC-CceE-EEEeec-----CCCCeEEEeccCCcEEE
Confidence 122221 1222 222222 45566777766665543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=212.53 Aligned_cols=278 Identities=18% Similarity=0.255 Sum_probs=221.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++...|....+++|+.|..+.++|..+++.+..++||.-.+..+.|++. ...
T Consensus 223 ~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---------------------------~~~ 275 (506)
T KOG0289|consen 223 TALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---------------------------LDT 275 (506)
T ss_pred eEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---------------------------hhh
Confidence 33355666689999999999999999999999999988776666666555 667
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC--CCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~l~ 166 (630)
+++++.+-.|+||........ .....|..+|+.+..+|.|.||++++.||+..+.|++++.++...... .-.+++.+
T Consensus 276 v~~aSad~~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred eeecCCcceEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 899999999999999877755 445689999999999999999999999999999999999988776643 23689999
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
|+|||.++.+|. |.+++||+.++..+..|++|+++|..++|+.+|-||++++ +|+.|++||++..+.. ..+.+.
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~---kt~~l~ 430 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNF---KTIQLD 430 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhccc---ceeecc
Confidence 999999999998 8999999999999999999999999999999999999988 6999999999987744 334443
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccccccc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 324 (630)
... .+..+.|. +.|.+|+.++.|=+|++++-.+. .++
T Consensus 431 ~~~-~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k---------------------~W~---------------- 467 (506)
T KOG0289|consen 431 EKK-EVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTK---------------------SWT---------------- 467 (506)
T ss_pred ccc-cceeEEEc-----CCCCeEEeecceeEEEEEecccc---------------------cce----------------
Confidence 333 45566776 88999999977766666552211 111
Q ss_pred CCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 325 PASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.+..+..|.+...++.|....+++ +++|.|..+++..
T Consensus 468 ----------------~~~~~~~~sg~st~v~Fg~~aq~l-~s~smd~~l~~~a 504 (506)
T KOG0289|consen 468 ----------------EIKELADHSGLSTGVRFGEHAQYL-ASTSMDAILRLYA 504 (506)
T ss_pred ----------------eeehhhhcccccceeeecccceEE-eeccchhheEEee
Confidence 011222455566778888888888 8888888876643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=210.09 Aligned_cols=271 Identities=14% Similarity=0.181 Sum_probs=205.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+.++++|++||.++|||. .|+++..+.+|.+++. .++|...++. ...+++++.|.
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik------------------~v~~v~~n~~------~~~fvsas~Dq 169 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIK------------------SVAWVIKNSS------SCLFVSASMDQ 169 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCccee------------------eeEEEecCCc------cceEEEecCCc
Confidence 689999999999999997 5888888887665443 4566555443 45799999999
Q ss_pred eEEEEEccCCeeeEE---ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-------------------------C
Q 006808 97 DVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-------------------------T 148 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~---~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~-------------------------~ 148 (630)
++++|....+..... ...||...|.++...++|..+++|+.|.++++|+.. +
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 999999887764322 224899999999999999999999999999999932 1
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
+.++.++.+|..+|.++.|++ ...+++++ .+|+.||+.++..+.++.+ ...++++.++|..+.|++++ .|+.|++
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs-sdr~irl 326 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS-SDRHIRL 326 (423)
T ss_pred cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC-CCCceee
Confidence 235667889999999999998 56777777 8999999999998888774 56789999999998888887 5999999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc-cccccCceeEEeeccCCCcc
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~ 305 (630)
||.+++... .......+|.+.+..+.|.+ .+..+|++|+.||++++||+++-. ++.......-.+- +.
T Consensus 327 ~DPR~~~gs-~v~~s~~gH~nwVssvkwsp-----~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl-----~v 395 (423)
T KOG0313|consen 327 WDPRTGDGS-VVSQSLIGHKNWVSSVKWSP-----TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL-----SV 395 (423)
T ss_pred cCCCCCCCc-eeEEeeecchhhhhheecCC-----CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE-----EE
Confidence 999987533 11223345666554444443 455778999999999999998776 5555444433332 22
Q ss_pred cccchhhhhhhccccccccCCc
Q 006808 306 SQKSATAAIFAAKLQDIVKPAS 327 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~ 327 (630)
++.... .|++|+-|..++++.
T Consensus 396 dW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 396 DWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred eccCCc-eEEeccCcceEEEec
Confidence 333222 788888887666544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=201.39 Aligned_cols=236 Identities=17% Similarity=0.238 Sum_probs=190.8
Q ss_pred eEECCCC-CEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 11 TSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 11 ~~fs~dg-~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++|+++. +.+++++.||.+++||+.- ...++.++.|...+. .+.|++.. ...
T Consensus 66 V~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~------------------Svdwn~~~--------r~~ 119 (311)
T KOG0277|consen 66 VAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVY------------------SVDWNTVR--------RRI 119 (311)
T ss_pred eeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheE------------------Eecccccc--------cee
Confidence 4899965 5788999999999999642 345667776655444 45555554 567
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
+++++.||+|++|++..++.+.++ .+|...|...+|+| .++.|+++|.|+++++||++..-....+..|...+.|+.|
T Consensus 120 ~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw 198 (311)
T KOG0277|consen 120 FLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDW 198 (311)
T ss_pred EEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecc
Confidence 888899999999999999988776 58999999999999 6788999999999999999865444458999999999999
Q ss_pred cc-CCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 168 SS-DGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 168 ~p-~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
+. +...|++|+ +.|++||+++-+ ++..+.+|.-.|+.+.|||...-++++++.|-+++|||...+.. ++.+.
T Consensus 199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds----~~e~~ 274 (311)
T KOG0277|consen 199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS----AIETV 274 (311)
T ss_pred cccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh----hhhhh
Confidence 98 566777877 899999999854 67888999999999999998766666666899999999986552 35556
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.++..++.-+.++. -++.++|+++.|+.++||+.
T Consensus 275 ~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 275 DHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccceEEecccccc----ccCceeeecccccceeeecc
Confidence 67777777666651 35789999999999999984
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-25 Score=216.60 Aligned_cols=233 Identities=21% Similarity=0.298 Sum_probs=194.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+.|+|+++++++++.||.|++|++.+++....+..+.. .+.++.|.+. +.+
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~------------------~i~~~~~~~~---------~~~ 107 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS------------------YVSSVAFSPD---------GRI 107 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC------------------cEEEEEEcCC---------CCE
Confidence 3669999999999999999999999998877776654332 3556666654 456
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++++.+|.|.+||+.+++....+. .|...|.++.|+|++.++++++.++.|++||+.+++.+..+..|...+.++.|+
T Consensus 108 ~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 108 LSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence 7777779999999999888776654 688999999999998888888889999999999999999999888899999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|++..+++++ +.|++||+.+++.+..+..|...+.++.|+|++.++++++ .++.|++|++.+++.. ..+..+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~-----~~~~~~ 260 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECV-----QTLSGH 260 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeE-----EEcccc
Confidence 9998888877 8999999999988888888999999999999987777765 5999999999876533 222233
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
...+..+.+. |++.+|++++.||.+++|+
T Consensus 261 ~~~i~~~~~~-----~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 261 TNSVTSLAWS-----PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEEC-----CCCCEEEEecCCCeEEecC
Confidence 3345566666 8899999999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=206.54 Aligned_cols=274 Identities=15% Similarity=0.172 Sum_probs=215.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
.+++++|+.|..-++|++.++.....+ .+|...|+++.|+.+|.+|+||+.+|.|++|...++.....+......+.-+
T Consensus 76 ~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl 154 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL 154 (399)
T ss_pred CceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence 789999999999999999999977666 4899999999999999999999999999999999999888887666788899
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.|+|.+.+|+.|+ |.+.+|.+.++...+.+.||..++++=.|.|+|+.++++. .|++|++|++.++.+. +...
T Consensus 155 ~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~dgti~~Wn~ktg~p~---~~~~- 229 (399)
T KOG0296|consen 155 KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY-DDGTIIVWNPKTGQPL---HKIT- 229 (399)
T ss_pred EecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe-cCceEEEEecCCCcee---EEec-
Confidence 9999999999998 9999999999888889999999999999999999999987 6999999999999754 2222
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee-------ccCCCcccccchhhhhhh
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-------SEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~ 316 (630)
+.......+..++ ..+..+++|+.++.+++-+..+|+.+....+..+... -...+.|. ....+..++
T Consensus 230 ~~e~~~~~~~~~~-----~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~-ss~lpL~A~ 303 (399)
T KOG0296|consen 230 QAEGLELPCISLN-----LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS-SSKLPLAAC 303 (399)
T ss_pred ccccCcCCccccc-----cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc-ccccchhhc
Confidence 1122333444444 6788999999999999999888887665443111110 00001111 122446677
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
|+.||.+-+|+.. ...++....|...|+.+.|-+ -.+| +++..++.+|.|+...+
T Consensus 304 G~vdG~i~iyD~a---------~~~~R~~c~he~~V~~l~w~~-t~~l-~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 304 GSVDGTIAIYDLA---------ASTLRHICEHEDGVTKLKWLN-TDYL-LTACANGKVRQWDARTG 358 (399)
T ss_pred ccccceEEEEecc---------cchhheeccCCCceEEEEEcC-cchh-eeeccCceEEeeecccc
Confidence 7887766555422 223335557999999999999 6777 88888999999998554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=224.11 Aligned_cols=272 Identities=17% Similarity=0.240 Sum_probs=216.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.|+ ..+.||+|.. ..|++|+..++........+ ...++++.|.+. +.+|++
T Consensus 184 dWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~---------G~~Lav 234 (484)
T KOG0305|consen 184 DWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPD---------GSHLAV 234 (484)
T ss_pred hcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC------------------CCceEEEEECCC---------CCEEEE
Confidence 677 4457777764 57999999999865544311 346778888776 889999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEEccC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSD 170 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~ 170 (630)
|+.+|.|.|||..+.+.+..+...|...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|+++
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 99999999999999888866654599999999997 66799999999999999998876555 8889999999999999
Q ss_pred CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCc-EEEEE-eeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSS-AVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
+.++|+|+ +.+.|||.....++.++..|...|.+++|+|-.. .||+| |+.|+.|++||..++... ......
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-----~~vdtg 387 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-----DSVDTG 387 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-----cccccC
Confidence 99999999 8999999988888999999999999999999544 45553 345899999999988733 333333
Q ss_pred ceeeeeEEecCCccCCCCCEEEEE--ecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccccccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAI--SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK 324 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 324 (630)
.. ++.+.|+ +..+-|+++ ..++.|.||+..+.+.
T Consensus 388 sQ-VcsL~Ws-----k~~kEi~sthG~s~n~i~lw~~ps~~~-------------------------------------- 423 (484)
T KOG0305|consen 388 SQ-VCSLIWS-----KKYKELLSTHGYSENQITLWKYPSMKL-------------------------------------- 423 (484)
T ss_pred Cc-eeeEEEc-----CCCCEEEEecCCCCCcEEEEeccccce--------------------------------------
Confidence 44 4445554 555445543 3477899999865322
Q ss_pred CCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 325 PASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 325 ~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
...+.+|...|..+++||||..+ ++|+.|.++++|++-+
T Consensus 424 -----------------~~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 424 -----------------VAELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLFD 462 (484)
T ss_pred -----------------eeeecCCcceeEEEEECCCCCEE-EEecccCcEEeccccC
Confidence 11455899999999999999999 9999999999999843
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=226.66 Aligned_cols=228 Identities=14% Similarity=0.174 Sum_probs=173.6
Q ss_pred eeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEE
Q 006808 23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA 102 (630)
Q Consensus 23 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd 102 (630)
|+.++.|++|+......+..+.+|.. .+.+++|+|.+ +.+|++|+.||.|+|||
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~------------------~V~~lafsP~~--------~~lLASgS~DgtIrIWD 103 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTS------------------SILDLQFNPCF--------SEILASGSEDLTIRVWE 103 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCC------------------CEEEEEEcCCC--------CCEEEEEeCCCeEEEEE
Confidence 45578888898877666666664443 46677777654 56899999999999999
Q ss_pred ccCCee-------eEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 103 VSAGQL-------KWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 103 ~~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
+.++.. ......+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. +...|.+++|+|+|.+|
T Consensus 104 i~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 104 IPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred CCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 986431 11233579999999999998876 5688999999999999998877776 56789999999999999
Q ss_pred EEeC--CeEEEEECCCCceeeEeecCCCCeEEE-----EEeeCCcEEEEEeeCC---CeEEEEEcCCCccccceeeeeec
Q 006808 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM-----TFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l-----~~sp~~~~l~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
++++ +.|++||+++++.+.++.+|.+.+... .|++++.+++++|..+ +.|++||++..... .....+.
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--l~~~~ld 260 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA--LVTMSID 260 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc--eEEEEec
Confidence 9887 799999999999999999998765433 3458889999988532 47999999864322 1222333
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.....+...+.+ ++|.++++|+.|+.|++|++..+
T Consensus 261 ~~~~~L~p~~D~-----~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 261 NASAPLIPHYDE-----STGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCccceEEeeeC-----CCCCEEEEEECCCeEEEEEccCC
Confidence 333333333333 67899999999999999998654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-26 Score=229.89 Aligned_cols=236 Identities=15% Similarity=0.189 Sum_probs=191.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+|||.+ +|+|++.+|++|+.|.+|+||+..+.+|+.++.+|-..+..+.|.+.
T Consensus 51 dGpVRgv--~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhe------------------------ 104 (1202)
T KOG0292|consen 51 DGPVRGV--DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHE------------------------ 104 (1202)
T ss_pred CCcccee--eecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCC------------------------
Confidence 5899888 99999999999999999999999999999999988877777776665
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--------C-----
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------G----- 149 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~--------~----- 149 (630)
-.+|++++.|.+|+||+.++++++..+ .||...|.|..|+|....++++|-|.+|++||+.. +
T Consensus 105 ---yPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~ 180 (1202)
T KOG0292|consen 105 ---YPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ 180 (1202)
T ss_pred ---CceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhh
Confidence 668999999999999999999999555 58999999999999999999999999999999852 1
Q ss_pred --------------c--eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEee
Q 006808 150 --------------S--LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD 209 (630)
Q Consensus 150 --------------~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp 209 (630)
. ..+.+.+|...|.-++|+|.-.++++|+ ..|++|.....+ .+.++.||.+.|+++-|+|
T Consensus 181 ~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 181 MRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred hhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC
Confidence 0 1234678999999999999999999998 799999987654 4667899999999999999
Q ss_pred CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 210 ~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
....+++.| .|+.|+|||+...+. +..+.+......+++.. |..+++++|-. +-+.||.
T Consensus 261 ~q~lIlSns-EDksirVwDm~kRt~-----v~tfrrendRFW~laah-----P~lNLfAAgHD-sGm~VFk 319 (1202)
T KOG0292|consen 261 HQDLILSNS-EDKSIRVWDMTKRTS-----VQTFRRENDRFWILAAH-----PELNLFAAGHD-SGMIVFK 319 (1202)
T ss_pred ccceeEecC-CCccEEEEecccccc-----eeeeeccCCeEEEEEec-----CCcceeeeecC-CceEEEE
Confidence 988998887 799999999988763 33443333333333333 66665555443 3333444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=231.73 Aligned_cols=236 Identities=18% Similarity=0.306 Sum_probs=200.5
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEE-ecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+|..|. +.++++++.|++|++|+..++..+.. +.+|.+.+..+.+... +.
T Consensus 212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------------------~~ 262 (537)
T KOG0274|consen 212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------------------GD 262 (537)
T ss_pred hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------------------CC
Confidence 444565 56899999999999999999999888 8888877765555432 67
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
.+++|+.|.++++||+.+|++...+. +|.+.|.++... +..+++|+.|.+|++|++.++.++..+.+|.++|.++..
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence 89999999999999999999997765 899999999884 447888999999999999999999999999999999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
+ +.++++|+ ++|++||+.+++++.++.+|..+|.++.+.+. .++++++ .|++|++||+.+.. .|+..+.+
T Consensus 340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~----~c~~tl~~ 411 (537)
T KOG0274|consen 340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKR----KCIHTLQG 411 (537)
T ss_pred c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchh----hhhhhhcC
Confidence 8 77888888 89999999999999999999999999988765 7788887 69999999999983 26667776
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
+...+.... ..+++|++++.||.|++||..+++.++..+
T Consensus 412 h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 412 HTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred Ccccccccc-------cccceeEeccccccEEEeecccCceeeeec
Confidence 666654443 347999999999999999998887766543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-24 Score=215.04 Aligned_cols=313 Identities=14% Similarity=0.178 Sum_probs=241.0
Q ss_pred EECCCC--CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg--~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
-++|.- +.++.|+.+|.+.+|++.+++.++++++....++++.-+|. -..+
T Consensus 165 l~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa---------------------------LDVV 217 (910)
T KOG1539|consen 165 LLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA---------------------------LDVV 217 (910)
T ss_pred EecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc---------------------------ceEE
Confidence 356654 57889999999999999999999999987766666655554 5679
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEee-----------
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR----------- 156 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~----------- 156 (630)
++|..+|+|.+++++.++.+..+. | .++|++++|..||+. +++|+..|.+.+||+...+.+....
T Consensus 218 aiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~ 295 (910)
T KOG1539|consen 218 AIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT 295 (910)
T ss_pred EEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence 999999999999999999998884 5 499999999999987 5666677999999997543322111
Q ss_pred --------------------------------------------------------------------------------
Q 006808 157 -------------------------------------------------------------------------------- 156 (630)
Q Consensus 157 -------------------------------------------------------------------------------- 156 (630)
T Consensus 296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence
Q ss_pred ----------------------------------------------------------------cCC------CCeEEEE
Q 006808 157 ----------------------------------------------------------------AST------KGISCMA 166 (630)
Q Consensus 157 ----------------------------------------------------------------~~~------~~v~~l~ 166 (630)
.+. ..+++++
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 000 3567888
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEe---ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
.++.|++.+.|. |.|-+|++++|-...+| +.|.++|++++...-++.+++++ .+|.+++||+.+.... ...
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~l~---~~l 531 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKVLK---KSL 531 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCccee---eee
Confidence 889999988887 99999999999888888 58999999999998889999988 5999999999887633 222
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
.+++... +.... .....++.+..|-.|.++|..+.+.++.+..+...+.... |+|+++ .|++++.|+
T Consensus 532 ~l~~~~~---~iv~h-----r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~Dgr----WlisasmD~ 598 (910)
T KOG1539|consen 532 RLGSSIT---GIVYH-----RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGR----WLISASMDS 598 (910)
T ss_pred ccCCCcc---eeeee-----ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCc----EEEEeecCC
Confidence 3333222 22222 4457788888999999999999988887766655544333 899999 999999999
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccce-eccccceec
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL-KSKRGRYVQ 380 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d-~~~~~w~~~ 380 (630)
++++||.- ....+..+ .-..+..++.|||+|.+| +|...| .-+++|.-+
T Consensus 599 tIr~wDlp--------t~~lID~~-~vd~~~~sls~SPngD~L-AT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 599 TIRTWDLP--------TGTLIDGL-LVDSPCTSLSFSPNGDFL-ATVHVDQNGIYLWSNK 648 (910)
T ss_pred cEEEEecc--------CcceeeeE-ecCCcceeeEECCCCCEE-EEEEecCceEEEEEch
Confidence 99987632 11122111 344578899999999999 888777 779999643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=243.09 Aligned_cols=238 Identities=17% Similarity=0.256 Sum_probs=193.2
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++| .+++|+| ++.+||+|+.||+|+|||+.+++.+..+.+|.. .+.++.|.+.+
T Consensus 533 ~~v--~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~------------------~V~~l~~~p~~----- 587 (793)
T PLN00181 533 SKL--SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK------------------RVWSIDYSSAD----- 587 (793)
T ss_pred Cce--eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC------------------CEEEEEEcCCC-----
Confidence 345 4458987 478999999999999999999998888875544 35566666543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe-cCCCEEEEEeCCCcEEEEeCCCCc-eeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~ 160 (630)
+.+|++|+.||.|++||+.++..+..+. +...|.++.|+ ++|.+|++|+.||.|++||+++++ .+..+.+|..
T Consensus 588 ---~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~ 662 (793)
T PLN00181 588 ---PTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK 662 (793)
T ss_pred ---CCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence 6789999999999999999988876663 34689999995 478999999999999999998765 5677888999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCC------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.|.++.|. ++.++++++ ++|++||+..+ .++..+.+|...+..++|+|++.+|++++ .|+.|++|+....
T Consensus 663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~ 740 (793)
T PLN00181 663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCC
Confidence 99999997 567888877 89999999743 56788999999999999999999999888 6999999998765
Q ss_pred ccccceeeee-----------ecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 233 KKQSASCVLA-----------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 233 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
... ..+. ..+....+..++|+ |++.+|++|+.+|.|+||++
T Consensus 741 ~~~---~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-----~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPV---LSYKFKTIDPVSGLEVDDASQFISSVCWR-----GQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred Cce---EEEecccCCcccccccCCCCcEEEEEEEc-----CCCCeEEEecCCCcEEEEec
Confidence 322 1111 12234467777777 89999999999999999985
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=212.29 Aligned_cols=231 Identities=14% Similarity=0.180 Sum_probs=191.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++.|-.||.+||+|...|.|+|||..+...+..+..|+.++....|+|. + +..
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~------------------d--------~t~ 125 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ------------------D--------NTM 125 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc------------------C--------CeE
Confidence 45589999999999999999999997776667777777776665555544 2 677
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~ 166 (630)
+++|+.|+.+++||+.+.... ....+|+..|.|.+|+|... .++|||.||+|++||+++. ..+..+. |..+|..+.
T Consensus 126 l~s~sDd~v~k~~d~s~a~v~-~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl 203 (487)
T KOG0310|consen 126 LVSGSDDKVVKYWDLSTAYVQ-AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL 203 (487)
T ss_pred EEecCCCceEEEEEcCCcEEE-EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence 888999999999999999874 44468999999999999544 6899999999999999987 5666666 888999999
Q ss_pred EccCCCEEEEeC-CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 167 VSSDGKMLATAA-GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 167 ~~p~~~~l~~~~-g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
+-|.|..+++++ +.|++||+.+|. .+..+..|...|+|+.+..++..|++++ -|+.+++||+.+-+ .+..+.
T Consensus 204 ~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~K-----vv~s~~ 277 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYK-----VVHSWK 277 (487)
T ss_pred EcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccceE-----EEEeee
Confidence 999999999998 699999999654 4555556999999999999999999998 59999999976654 456666
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
.++.+..+..+ |++..++.|..+|.+.+-
T Consensus 278 ~~~pvLsiavs------~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 278 YPGPVLSIAVS------PDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred cccceeeEEec------CCCceEEEecccceeeee
Confidence 67777766554 899999999999988765
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=219.17 Aligned_cols=240 Identities=19% Similarity=0.267 Sum_probs=200.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ +....+.|++|.
T Consensus 218 ~~v--tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-----------------~h~~rvg~laW~--------- 269 (484)
T KOG0305|consen 218 ELV--TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-----------------SHASRVGSLAWN--------- 269 (484)
T ss_pred Cce--EEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-----------------CcCceeEEEecc---------
Confidence 456 4559999999999999999999999998888877763 234577899997
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
...+.+|+.+|.|..+|++..+.......+|...|..++|++++.++++|+.|+.+.|||.....++..+..|.+.|.
T Consensus 270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK 347 (484)
T KOG0305|consen 270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK 347 (484)
T ss_pred --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence 456889999999999999998876665678999999999999999999999999999999988899999999999999
Q ss_pred EEEEcc-CCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE-EeeCCCeEEEEEcCCCccccc
Q 006808 164 CMAVSS-DGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 164 ~l~~~p-~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~-~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+++|+| ...+||+|+ +.|++||..+++.+.... -...|..|.|++..+-|++ .|..+..|.||+..+.+..
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-- 424 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-- 424 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--
Confidence 999999 567888887 599999999999887765 4578999999998865555 4445678999999886543
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
....+|...+ ..+..+ |||..|++|+.|.++++|++-..
T Consensus 425 --~~l~gH~~RV-l~la~S-----Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 --AELLGHTSRV-LYLALS-----PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --eeecCCccee-EEEEEC-----CCCCEEEEecccCcEEeccccCC
Confidence 3334555554 444554 99999999999999999997543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=220.00 Aligned_cols=319 Identities=14% Similarity=0.173 Sum_probs=223.1
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCc------EEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 15 PALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
|.++||++||.||.|++|+...-. +...+..|...++.++.... +..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------------------~~t 87 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------------------GKT 87 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------------------CCc
Confidence 466789999999999999875322 35556666666665544433 567
Q ss_pred EEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEE-ecCCCEEEEEeCCCcEEEEeCCCC--ceeEE--------e
Q 006808 89 LVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISF-ATHGSCIYSAGADGMVCEIDPLTG--SLLGK--------F 155 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~~dg~v~iwd~~~~--~~~~~--------~ 155 (630)
|++++.|-+|++|+...+. ++ .....|...|.|+++ .++...+++||-|+.|++||+.++ +.+.. +
T Consensus 88 lIS~SsDtTVK~W~~~~~~~~c~-stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNTFCM-STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred eEEecCCceEEEeecccCcchhH-hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 9999999999999998873 44 445679999999999 778888999999999999999977 22222 2
Q ss_pred e-cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 156 R-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 156 ~-~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
. ++..+|++++.++.|..+++|+ +.+++||.++++.+..+.||+..|..+..++||..++++++ ||+|++||+...
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS-DgtIrlWdLgqQ 245 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS-DGTIRLWDLGQQ 245 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC-CceEEeeecccc
Confidence 2 6777999999999998888888 89999999999999999999999999999999999999985 999999999887
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc---ccccCceeEEeeccCCCcccccc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE---LRNTKATKILSSSEDVNSKSQKS 309 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 309 (630)
+ |+.++..+...+..+..+ |+=.++.+|+.||.|..=|+.+... +.....+..... .....+
T Consensus 246 r-----Cl~T~~vH~e~VWaL~~~-----~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~----~~~~~~- 310 (735)
T KOG0308|consen 246 R-----CLATYIVHKEGVWALQSS-----PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH----LHEHDN- 310 (735)
T ss_pred c-----eeeeEEeccCceEEEeeC-----CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh----hccccC-
Confidence 6 444444333334444444 7778999999999999888877421 111111110000 000011
Q ss_pred hhhhhhhccccccccCCceeEEEEE---cC-------ccCceeeE-----Eecc-CCCcEEEeecCCcceeeccccceec
Q 006808 310 ATAAIFAAKLQDIVKPASVHTFVAY---GL-------LLKPSFQK-----ILVN-SGEDINLNCSQDGVLLPMSQSLLKS 373 (630)
Q Consensus 310 ~~~~i~~~~~d~~~~~~~~~~~~~~---g~-------~~~~~~~~-----~~~h-~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (630)
.+-+++.|+.++-|.+...+.. |. ...+.... ...| ...+...++-.|.+++ +|-...|.
T Consensus 311 ---~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhV-lTkDa~gn 386 (735)
T KOG0308|consen 311 ---SVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHV-LTKDAKGN 386 (735)
T ss_pred ---CceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceE-eeecCCCC
Confidence 2344444544444433322211 10 00111110 0011 1235556667788888 99999999
Q ss_pred cccceecc
Q 006808 374 KRGRYVQN 381 (630)
Q Consensus 374 ~~~w~~~~ 381 (630)
+.+|++-.
T Consensus 387 v~lwDIl~ 394 (735)
T KOG0308|consen 387 VALWDILA 394 (735)
T ss_pred EEEEEeee
Confidence 99999853
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=214.47 Aligned_cols=283 Identities=13% Similarity=0.185 Sum_probs=199.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcE-EEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+..| .++++.|.|-.|++||.|.+|++||+..... ...|+.... .....+..+.|.+.
T Consensus 167 tk~V--sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--------------~E~h~i~sl~ys~T----- 225 (641)
T KOG0772|consen 167 TKIV--SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--------------CETHQINSLQYSVT----- 225 (641)
T ss_pred ceEE--EEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--------------ccccccceeeecCC-----
Confidence 4567 4559999999999999999999999874332 111221111 11224556666664
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeE-----------EccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW-----------RLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~-----------~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~ 149 (630)
+..|++.++....+|+|-....... ...+||...++|.+|+|..+ .|++++.||++++||+...
T Consensus 226 ----g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 226 ----GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred ----CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 6778888888899999976443321 12368999999999999654 5999999999999999765
Q ss_pred c-eeEEeec-----CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce---eeEeecCCC--CeEEEEEeeCCcEEEE
Q 006808 150 S-LLGKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPG--AVRFMTFSDNGKYVLS 216 (630)
Q Consensus 150 ~-~~~~~~~-----~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~--~v~~l~~sp~~~~l~~ 216 (630)
+ ..+.|+. ..-+++.++|+|+|+.+|+|+ |+|.+|+..+... ...-..|.. .|++|.||++|++|++
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence 3 3333332 223789999999999999988 9999999855432 222356766 8999999999999999
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeec--CCceeeeeEEecCCccCCCCCEEEEEec------CCcEEEEEcCCccccc
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEELR 288 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~ 288 (630)
-| .|+++++||++..+.. +.... .......-++|+ |+.++|++|+. .|.+++||..+...+.
T Consensus 382 Rg-~D~tLKvWDLrq~kkp----L~~~tgL~t~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 382 RG-FDDTLKVWDLRQFKKP----LNVRTGLPTPFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred cc-CCCceeeeeccccccc----hhhhcCCCccCCCCccccC-----CCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 88 6999999999987643 22111 122223445565 99999999965 5689999998888777
Q ss_pred ccCceeEEeeccCCCcccccchhhhhhhccccccccC
Q 006808 289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
........+. ...++..+..|++++.||.++.
T Consensus 452 ki~i~~aSvv-----~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 452 KIDISTASVV-----RCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred EecCCCceEE-----EEeecchhhheeeecCCCceEE
Confidence 6654433322 1123344458999998775443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-26 Score=212.43 Aligned_cols=277 Identities=17% Similarity=0.156 Sum_probs=212.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.|.++ .|-++...|++|+.|..|++|++..++ .+.++.+..+.+..+.|.++
T Consensus 176 gev~~v--~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~----------------------- 230 (459)
T KOG0288|consen 176 GEVHDV--EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD----------------------- 230 (459)
T ss_pred ccccee--EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC-----------------------
Confidence 445445 899998999999999999999987666 44555544444444433333
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+..+++++.|+.+++|++...+...++ .+|+..|+++.|......+++|+.|.+|+.||+....|.+++-. ...
T Consensus 231 ----~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~ 304 (459)
T KOG0288|consen 231 ----NKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQ 304 (459)
T ss_pred ----CceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-ccc
Confidence 777999999999999999999988666 47999999999988766699999999999999999888877553 334
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+..|+.+ ...+++|. +.|++||+++..+....+.+. .|+++..++++..+++++ .|.++.+.|+++.... .
T Consensus 305 cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~---~ 377 (459)
T KOG0288|consen 305 CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIR---Q 377 (459)
T ss_pred ccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeecccccEE---E
Confidence 4555554 34556665 799999999999998888665 999999999999999987 7999999999987633 1
Q ss_pred eeeecC--CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 240 VLAMEH--PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 240 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
.+.... .+..++-+.|+ |++.|+++|+.||.|+||++.+++.-...+ .
T Consensus 378 ~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~-------------------------~ 427 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFS-----PDGSYVAAGSADGSVYIWSVFTGKLEKVLS-------------------------L 427 (459)
T ss_pred EeeccccccccccceeEEC-----CCCceeeeccCCCcEEEEEccCceEEEEec-------------------------c
Confidence 222111 11224445565 999999999999999999998876522111 0
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccc
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (630)
+ .....|.+++|+|.|.+| ++++.++.+.+|
T Consensus 428 s----------------------------~s~~aI~s~~W~~sG~~L-lsadk~~~v~lW 458 (459)
T KOG0288|consen 428 S----------------------------TSNAAITSLSWNPSGSGL-LSADKQKAVTLW 458 (459)
T ss_pred C----------------------------CCCcceEEEEEcCCCchh-hcccCCcceEec
Confidence 0 001158899999999999 899888888888
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-25 Score=230.12 Aligned_cols=297 Identities=17% Similarity=0.134 Sum_probs=215.7
Q ss_pred eEeEECCCCCEEEEee--CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
.++..+|||..+|||+ .||.++||+...--. ............... ...| ...++|+.|.+. +
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~~~~~~l~k~l~~---m~~h-~~sv~CVR~S~d---------G 81 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD--EKEEKNENLPKHLCT---MDDH-DGSVNCVRFSPD---------G 81 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccc--hhhhhhcccchhhee---eccc-cCceeEEEECCC---------C
Confidence 6779999999999999 799999998753210 000000000000000 0122 336777878765 8
Q ss_pred cEEEEEeCCCeEEEEEccC----------C--------eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 87 SLLVLGTGGGDVLALAVSA----------G--------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~----------~--------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
.+||+|+.|+.|.||.... | +++ ..+.+|.+.|.+++|+|++.++++++.|++|.+|+..+
T Consensus 82 ~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 82 SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEecccceEEEEcccc
Confidence 8999999999999999872 0 122 34468999999999999999999999999999999999
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC------CCCeEEEEEeeCCcEEEEEeeC
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
++.+..+.+|.+.|..+.|.|-|+++|+-+ ++|++|.+.+....+.+..+ ......+.|||||.+|++...-
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 999999999999999999999999999988 89999998887777766544 2357899999999999986543
Q ss_pred CC---eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC------------EEEEEecCCcEEEEEcCCcc
Q 006808 221 ER---YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL------------YVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 221 d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+ ++.|.+-.+-+. .....+|.. .+.++.|++.-|..... .+|+|+.|+.|.||.....+
T Consensus 241 n~~~~~~~IieR~tWk~----~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKV----DKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred cCCcceeEEEecCCcee----eeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 32 567766544331 123345555 66777777543321111 57888999999999874443
Q ss_pred cccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceee
Q 006808 286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP 365 (630)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (630)
++.. +.. .-...|..++|+|||..|
T Consensus 316 Pl~v---------------------------i~~---------------------------lf~~SI~DmsWspdG~~L- 340 (942)
T KOG0973|consen 316 PLFV---------------------------IHN---------------------------LFNKSIVDMSWSPDGFSL- 340 (942)
T ss_pred chhh---------------------------hhh---------------------------hhcCceeeeeEcCCCCeE-
Confidence 3211 111 112368899999999999
Q ss_pred ccccceeccccceecc
Q 006808 366 MSQSLLKSKRGRYVQN 381 (630)
Q Consensus 366 ~s~s~d~~~~~w~~~~ 381 (630)
+.+|.||++.+-.++.
T Consensus 341 facS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEE 356 (942)
T ss_pred EEEecCCeEEEEEcch
Confidence 9999999999987754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-26 Score=205.86 Aligned_cols=238 Identities=18% Similarity=0.236 Sum_probs=196.2
Q ss_pred CCCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEec-ccccccccccccccccccccccceeeEEecccccc
Q 006808 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 1 ~~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
|...+| +|+.||.|...||+|+.||.|+||.+.+|.|+..|. .|.. .++|+.|...
T Consensus 261 Mmd~aV--lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk------------------Gvt~l~FSrD--- 317 (508)
T KOG0275|consen 261 MMDDAV--LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK------------------GVTCLSFSRD--- 317 (508)
T ss_pred ecccce--EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhcc------------------CeeEEEEccC---
Confidence 456789 888999999999999999999999999999998886 3333 4555555544
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+..+++++.|.++++.-+.+|+++..+ +||++.|+...|.++|.++++++.||+|++|+..+.+|+.+|+...
T Consensus 318 ------~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 318 ------NSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred ------cchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence 667999999999999999999998766 5899999999999999999999999999999999999999998654
Q ss_pred C--CeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecC---CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 K--GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~--~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h---~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
. +|.++-.-|. ...++++. ++|++.++ .|+.+++|... .+...+.+.+|.|.++++.+ .|+.++.|...+
T Consensus 391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~s 468 (508)
T KOG0275|consen 391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLS 468 (508)
T ss_pred CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeec
Confidence 3 7888888774 45666666 89999997 57888888532 35566778899999999998 799999999999
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
++.. ....-|...++..... |..+.|++-+.||.+++|.
T Consensus 469 G~LE----~tl~VhEkdvIGl~HH------PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLE----RTLPVHEKDVIGLTHH------PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Ccee----eeeecccccccccccC------cccchhhhhcccchhhhcC
Confidence 8754 2222355555554443 7889999999999999995
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=182.15 Aligned_cols=298 Identities=15% Similarity=0.195 Sum_probs=219.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+..||++ +|+|.|.+.|+|++..+++|.-...-.-+. . +|..... |
T Consensus 32 sqairav--~fhp~g~lyavgsnskt~ric~yp~l~~~r--~-----------------~hea~~~------p------- 77 (350)
T KOG0641|consen 32 SQAIRAV--AFHPAGGLYAVGSNSKTFRICAYPALIDLR--H-----------------AHEAAKQ------P------- 77 (350)
T ss_pred hhheeeE--EecCCCceEEeccCCceEEEEccccccCcc--c-----------------ccccccC------C-------
Confidence 4568666 999999999999999999987542111000 0 1111000 0
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-----eEEeec
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRA 157 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~ 157 (630)
........+.|.+.|.|.+|+|+|.+|++|+.|.+|++.-+....+ -..|..
T Consensus 78 -----------------------p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm 134 (350)
T KOG0641|consen 78 -----------------------PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM 134 (350)
T ss_pred -----------------------CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee
Confidence 0011122346999999999999999999999999999987654332 234777
Q ss_pred CCCCeEEEEEcc----CCCEEEEeC-C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 158 STKGISCMAVSS----DGKMLATAA-G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 158 ~~~~v~~l~~~p----~~~~l~~~~-g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
|.+.|..++|-. .|.+|++++ | .|++-|...|+....+.+|++.|.++- +-+|-.+++++ .|.+|++||++
T Consensus 135 hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgs-qdktirfwdlr 212 (350)
T KOG0641|consen 135 HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGS-QDKTIRFWDLR 212 (350)
T ss_pred cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccC-CCceEEEEeee
Confidence 999999999964 356788877 4 777779999999999999999998762 33466666665 79999999998
Q ss_pred CCccccceeeeeec-------CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCC
Q 006808 231 GVKKQSASCVLAME-------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (630)
Q Consensus 231 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (630)
-.. |+..+. .....+..++.. |.|++|++|-.|....+||++-++.++.+.|....+.|.. |
T Consensus 213 v~~-----~v~~l~~~~~~~glessavaav~vd-----psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-f 281 (350)
T KOG0641|consen 213 VNS-----CVNTLDNDFHDGGLESSAVAAVAVD-----PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-F 281 (350)
T ss_pred ccc-----eeeeccCcccCCCcccceeEEEEEC-----CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-e
Confidence 765 222222 123556667776 9999999999999999999999999998888776666555 7
Q ss_pred cccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 304 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+|... ++++++.|..+++-+.+--.+. .-..-.+..|+..++.+.|+|..--+ +|.|.|++..+|.+
T Consensus 282 sp~a~----yllt~syd~~ikltdlqgdla~----el~~~vv~ehkdk~i~~rwh~~d~sf-isssadkt~tlwa~ 348 (350)
T KOG0641|consen 282 SPGAH----YLLTCSYDMKIKLTDLQGDLAH----ELPIMVVAEHKDKAIQCRWHPQDFSF-ISSSADKTATLWAL 348 (350)
T ss_pred CCCce----EEEEecccceEEEeecccchhh----cCceEEEEeccCceEEEEecCcccee-eeccCcceEEEecc
Confidence 88877 9999999987776543322221 11222445799999999999998877 89999999999965
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=215.95 Aligned_cols=203 Identities=15% Similarity=0.214 Sum_probs=162.6
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcE-------EEEecccccccccccccccccccccccceeeEEec
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQV-------QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (630)
+++| .+++|+| ++++||+|+.|++|+|||+.++.. +..+. +| ...+.++.|.
T Consensus 75 ~~~V--~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-----------------gH-~~~V~~l~f~ 134 (493)
T PTZ00421 75 EGPI--IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-----------------GH-TKKVGIVSFH 134 (493)
T ss_pred CCCE--EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-----------------CC-CCcEEEEEeC
Confidence 4678 5559999 889999999999999999976532 33343 33 2356677787
Q ss_pred ccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 006808 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (630)
|.. ..+|++|+.|+.|+|||+.+++....+ .+|...|.+++|+|+|.+|++++.|++|++||+++++.+..
T Consensus 135 P~~--------~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 135 PSA--------MNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred cCC--------CCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 653 568999999999999999999877555 57999999999999999999999999999999999999999
Q ss_pred eecCCCC-eEEEEEccCCCEEEEeC------CeEEEEECCCCc-eeeEeecC-CCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 155 FRASTKG-ISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 155 ~~~~~~~-v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~-~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
+.+|.+. +..+.|.|++..+++++ +.|++||+++.. ++.....+ ...+....|++++.+|++++..|+.|+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 9888764 45778999877776643 689999998764 34333333 345666788999999998876699999
Q ss_pred EEEcCCCcc
Q 006808 226 LWRTDGVKK 234 (630)
Q Consensus 226 vwd~~~~~~ 234 (630)
+|++..+..
T Consensus 286 iwdl~~~~~ 294 (493)
T PTZ00421 286 CFELMNERL 294 (493)
T ss_pred EEEeeCCce
Confidence 999998763
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=199.44 Aligned_cols=239 Identities=16% Similarity=0.226 Sum_probs=183.5
Q ss_pred CcccceeEeEECC---CCCEEEEeeCCCcEEEEECCCCcEE----EEecccccccccccccccccccccccceeeEEecc
Q 006808 3 SSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 3 s~~V~~~~~~fs~---dg~~las~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
++||+++ +|-- ....|+++|.|.++++|.++.+... ...+||...+.++...++
T Consensus 144 t~~ik~v--~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s----------------- 204 (423)
T KOG0313|consen 144 TGPIKSV--AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS----------------- 204 (423)
T ss_pred Ccceeee--EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC-----------------
Confidence 4677444 4432 2246999999999999998877643 222344444443333322
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCC------------------------eeeEEccCCCCCCEEEEEEecCCCE
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAG------------------------QLKWRLSDCHPGGVSAISFATHGSC 131 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~------------------------~~~~~~~~~h~~~v~~~~~s~~g~~ 131 (630)
+..+++|+.|..|.||+..+. +.....+.||+.+|.++.|++ ...
T Consensus 205 ----------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 205 ----------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ----------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 788999999999999993210 011233468999999999998 668
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc---eeeEeecCCCCeEEEE
Q 006808 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGAVRFMT 206 (630)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~---~~~~~~~h~~~v~~l~ 206 (630)
+++++.|.+|+.||+.+++++.++.+ ...+.|+.++|...+|++|+ ..|++||.+++. ...+|.+|.+.|.++.
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK 352 (423)
T ss_pred eEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhee
Confidence 99999999999999999999988874 45789999999999999998 799999999874 4567899999999999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
|+|...+.+++++.|+++++||+++.+.. ++.+..+..-+-++.|. ++..|++|+.|++|+|+...
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~p----lydI~~h~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAP----LYDIAGHNDKVLSVDWN------EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCc----ceeeccCCceEEEEecc------CCceEEeccCcceEEEeccc
Confidence 99999888887779999999999997633 44444444444444453 57899999999999998753
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=190.99 Aligned_cols=286 Identities=18% Similarity=0.207 Sum_probs=195.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++.| .+++||.||++||+++.|++|+||++...... .|.. + ..++..+ ..+.+.|.|.-
T Consensus 86 ~~~v--t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----eHr~----~--R~nve~d----hpT~V~FapDc----- 144 (420)
T KOG2096|consen 86 KKEV--TDVAFSSDGKKLATISGDRSIRLWDVRDFENK----EHRC----I--RQNVEYD----HPTRVVFAPDC----- 144 (420)
T ss_pred CCce--eeeEEcCCCceeEEEeCCceEEEEecchhhhh----hhhH----h--hccccCC----CceEEEECCCc-----
Confidence 4578 45599999999999999999999999763321 1100 0 0000111 22344454442
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC---eee--------EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG---QLK--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~---~~~--------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~ 151 (630)
..+++.+-...++++|.+... ... ..+...|...|..+.....+.+|++++.|..|.+|+++ |+.
T Consensus 145 ---~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 145 ---KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred ---ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 334444444455999987532 211 12334577788888888889999999999999999998 999
Q ss_pred eEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECC---CC-----ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS---DH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~---~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
++.+......-+..+++|+|+++++++ -.|++|.+- .| ..+..++||...|..++|+|+...+++.+ .|
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kD 299 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KD 299 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cC
Confidence 999887777788899999999999998 689999763 22 23556789999999999999999999988 79
Q ss_pred CeEEEEEcCCCccccce-eeee-----e-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 222 RYIALWRTDGVKKQSAS-CVLA-----M-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
|++++||+.-.-..... .++. + ......+ -+..+ |+|..|+.... ..+++|..++|+...+.+
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls-----P~g~~lA~s~g-s~l~~~~se~g~~~~~~e--- 369 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS-----PSGDSLAVSFG-SDLKVFASEDGKDYPELE--- 369 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC-----CCCcEEEeecC-CceEEEEcccCccchhHH---
Confidence 99999998643211000 0111 0 1111222 23333 88887766544 578888877665432221
Q ss_pred EEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecc
Q 006808 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (630)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (630)
..|...|.+++|+++|+++ +|++ |+-+
T Consensus 370 ---------------------------------------------------~~h~~~Is~is~~~~g~~~-atcG-dr~v 396 (420)
T KOG2096|consen 370 ---------------------------------------------------DIHSTTISSISYSSDGKYI-ATCG-DRYV 396 (420)
T ss_pred ---------------------------------------------------HhhcCceeeEEecCCCcEE-eeec-ceee
Confidence 1577789999999999999 8888 5555
Q ss_pred ccc
Q 006808 375 RGR 377 (630)
Q Consensus 375 ~~w 377 (630)
|+.
T Consensus 397 rv~ 399 (420)
T KOG2096|consen 397 RVI 399 (420)
T ss_pred eee
Confidence 543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=221.38 Aligned_cols=239 Identities=20% Similarity=0.289 Sum_probs=196.4
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..+.|+. ++|..-+.+|++|+.|.+++|||..+|.|.+.+.+|.+.+..+...
T Consensus 248 H~g~V~~--l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~------------------------- 300 (537)
T KOG0274|consen 248 HFGGVWG--LAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID------------------------- 300 (537)
T ss_pred CCCCcee--EEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-------------------------
Confidence 3567844 4887777899999999999999999999999999777655432221
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
...+++|+.|.+|++|++.++.++..+ .+|.++|+++..+ +.++++|+.|++|++||+.+++++.++.+|...
T Consensus 301 ----~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 301 ----PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred ----CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 445777899999999999999998555 4699999999997 789999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
|+++.+.+. ..+++|+ ++|++||+.+. +++.++.+|..-+..+.+. +++|++++ .|++|++||..+++.
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~-aD~~Ik~WD~~~~~~---- 445 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS-ADGTIKLWDAEEGEC---- 445 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEecc-ccccEEEeecccCce----
Confidence 999988765 7888888 89999999999 9999999999988776654 67788877 699999999998873
Q ss_pred eeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
...+.. +...+..+.+ ....+++++.+|.+++||++++...+..
T Consensus 446 -~~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 446 -LRTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred -eeeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhh
Confidence 334433 2233333332 2478899999999999999999876654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=213.71 Aligned_cols=335 Identities=13% Similarity=0.113 Sum_probs=237.2
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEE---EEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
++++.|++..++|.+..+|..++|||+..-..+ ..+--|..-+..+..-|.. -| ...-.| .
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~n--v~-~~~~ac---l---------- 390 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCN--VH-SPTAAC---L---------- 390 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccccc--cc-Cccccc---C----------
Confidence 467899999999999999999999999764432 2222233333322211110 00 000001 1
Q ss_pred CCcEEEEEeCCCeEEEEEccCCe---eeEE-cc--------------------------------CCCCCCEEEEEEecC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQ---LKWR-LS--------------------------------DCHPGGVSAISFATH 128 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~---~~~~-~~--------------------------------~~h~~~v~~~~~s~~ 128 (630)
....+++|+.||+|++|++..+. ...+ ++ -+...++.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 14458999999999999997621 1100 00 012346999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc---CCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCe
Q 006808 129 GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAV 202 (630)
Q Consensus 129 g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p---~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v 202 (630)
|++|++|..-|++++|++..-+....+.+|...|.|+.|+. ..++||+++ ..|++||+... .++.++.+|...|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99999999999999999999998889999999999999985 357888888 68999998654 4678899999999
Q ss_pred EEEEEeeCC--cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC---ceeeeeEEecCCccCCCCCEEEEEecCCcEE
Q 006808 203 RFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 203 ~~l~~sp~~--~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~ 277 (630)
+++.|..+| ..++++| .|+.|.+--..... ...++...++ ...+.-+.. .|..+++++++.|..|+
T Consensus 551 TsvKFa~~gln~~MiscG-ADksimFr~~qk~~---~g~~f~r~t~t~~ktTlYDm~V-----dp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCG-ADKSIMFRVNQKAS---SGRLFPRHTQTLSKTTLYDMAV-----DPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred eEEEEeecCCceEEEecc-Cchhhheehhcccc---CceeccccccccccceEEEeee-----CCCcceEEEEecccceE
Confidence 999999887 6788887 58766443222111 0112222221 111222233 38899999999999999
Q ss_pred EEEcCCcccccccCceeEEeeccC--CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE
Q 006808 278 IWYGQNIEELRNTKATKILSSSED--VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (630)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (630)
||++.+|++.+.++.....-...+ ...|.+. ||++.+.|.++.+ ++.....++.++.+|...|+.+
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi----Y~atScsdktl~~--------~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI----YLATSCSDKTLCF--------VDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCcc----EEEEeecCCceEE--------EEeccchhhhhhcCcchheeee
Confidence 999999999887765432211111 1345555 8888888764333 4456678888999999999999
Q ss_pred eecCCcceeeccccceeccccceec
Q 006808 356 NCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.|++|-+.| +|.+.|+.|.+|.+.
T Consensus 690 kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 690 KFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred eecccchhh-eeecCCceEEEEECc
Confidence 999999999 999999999999874
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=204.76 Aligned_cols=280 Identities=15% Similarity=0.160 Sum_probs=213.9
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v 141 (630)
||.. .+.|++-+|.. -..+++|+.||.|+|||+....+..++ .+|.+.|.++++.. ..+++++.|.+|
T Consensus 64 gHrd-GV~~lakhp~~--------ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 64 GHRD-GVSCLAKHPNK--------LSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cccc-ccchhhcCcch--------hhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcce
Confidence 4433 44555555443 356899999999999999999888666 58999999999976 678999999999
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
+.|-+.- .+.+++.+ ...+..+.-+..+..+++++..|.|||.....++..+.-....|.++.|+|....++.++..|
T Consensus 132 K~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 132 KQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eeeeccC-Ccceeeec-cccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 9999764 46777664 445677777777888899889999999998889999988888899999999887666665469
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc-ccccccCceeEEeecc
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI-EELRNTKATKILSSSE 300 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~ 300 (630)
+.|.+||++...+. ...+..+. ...++|+ |.+--+++|++|..++.||.... ..+..++....++...
T Consensus 210 rsIvLyD~R~~~Pl-~KVi~~mR-----TN~Iswn-----PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 210 RSIVLYDLRQASPL-KKVILTMR-----TNTICWN-----PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV 278 (433)
T ss_pred CceEEEecccCCcc-ceeeeecc-----ccceecC-----ccccceeeccccccceehhhhhhcccchhhcccceeEEEe
Confidence 99999999998765 12222222 2345666 87778889999999999998776 4566677766666665
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+ |+|.++ -+++|+.|.+|+++...---.....-... -..|.|+.||-|.+|+ +|||.|+++|+|..
T Consensus 279 d-fsptG~----EfvsgsyDksIRIf~~~~~~SRdiYhtkR-------Mq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 279 D-FSPTGQ----EFVSGSYDKSIRIFPVNHGHSRDIYHTKR-------MQHVFCVKYSMDSKYI-ISGSDDGNVRLWKA 344 (433)
T ss_pred c-cCCCcc----hhccccccceEEEeecCCCcchhhhhHhh-------hheeeEEEEeccccEE-EecCCCcceeeeec
Confidence 5 899999 89999999988875421111110111111 1258999999999999 99999999999976
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=190.49 Aligned_cols=241 Identities=19% Similarity=0.256 Sum_probs=191.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++|+++ + -+|.|+|+||.|-+|+|||+.+...+..+..|.+.++++.|.++ ..
T Consensus 43 ~~sitav--A--Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~------------------~S---- 96 (362)
T KOG0294|consen 43 AGSITAL--A--VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPP------------------LS---- 96 (362)
T ss_pred ccceeEE--E--ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCC------------------cc----
Confidence 3566333 3 36889999999999999999999988888888777776666655 11
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
.+.|++|+.||.|.+|+.....++..+ ++|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+.-..++-. ...
T Consensus 97 ---~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~a 171 (362)
T KOG0294|consen 97 ---KSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKA 171 (362)
T ss_pred ---hhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-Ccc
Confidence 236899999999999999999887555 689999999999999999999999999999999998876555532 233
Q ss_pred EEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+.+.|+|.|.+++.+. +.|-+|.+.+......+. ....+.++.|-. +.+|++++ +|+.|.+||....... ..
T Consensus 172 t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~----~~ 244 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE-NPKRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPL----TE 244 (362)
T ss_pred eeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhh-ccccceeeeecC-CceEEEec-CCceEEEeccCCCccc----ee
Confidence 5599999999888777 899999998877665554 335567777754 56788887 6999999999885533 34
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
...|...+-.+..+. .|++.+|++++.||.|+|||+....
T Consensus 245 ~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 245 FLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eecchhheeeeEEEe----cCCceEEEEeccCceEEEEEccccc
Confidence 456777777776564 3788999999999999999986553
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-24 Score=221.18 Aligned_cols=243 Identities=19% Similarity=0.245 Sum_probs=191.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC------------------cEEEEeccccccccccccccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------------------QVQTEFADIASTETTSLYGNRLEREHL 64 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~~~~s~~~~~~~~ 64 (630)
.++| .|+.|+|||++||+||.|+.|.||..... ++...+. +|
T Consensus 69 ~~sv--~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-----------------~H- 128 (942)
T KOG0973|consen 69 DGSV--NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-----------------GH- 128 (942)
T ss_pred cCce--eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-----------------cC-
Confidence 4678 66699999999999999999999997731 1223333 33
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI 144 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iw 144 (630)
..++..+.|.|. +.++++++.|++|.|||..+.+.+ +...+|.+.|-++.|.|-|++|++-+.|++|++|
T Consensus 129 ~~DV~Dv~Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~-~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvw 198 (942)
T KOG0973|consen 129 DSDVLDVNWSPD---------DSLLVSVSLDNSVIIWNAKTFELL-KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVW 198 (942)
T ss_pred CCccceeccCCC---------ccEEEEecccceEEEEccccceee-eeeecccccccceEECCccCeeeeecCCceEEEE
Confidence 335667777764 789999999999999999999666 5556899999999999999999999999999999
Q ss_pred eCCCCceeEEeecC------CCCeEEEEEccCCCEEEEeC------CeEEEEECCCCceeeEeecCCCCeEEEEEeeC--
Q 006808 145 DPLTGSLLGKFRAS------TKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-- 210 (630)
Q Consensus 145 d~~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~-- 210 (630)
++.+....+.+..+ ...+..+.|+|||.+|++.. .++.|.+-.+.+.-..|.||.+++.++.|+|.
T Consensus 199 rt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf 278 (942)
T KOG0973|consen 199 RTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF 278 (942)
T ss_pred EcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh
Confidence 98877776665543 23678999999999999975 48999998888888889999999999999972
Q ss_pred ------C-------cE-EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcE
Q 006808 211 ------G-------KY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (630)
Q Consensus 211 ------~-------~~-l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i 276 (630)
| .| ++++|+.|+.|.||.....++. .+...-....+.... |+ |||..|+++|.||+|
T Consensus 279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl---~vi~~lf~~SI~Dms-Ws-----pdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL---FVIHNLFNKSIVDMS-WS-----PDGFSLFACSLDGTV 349 (942)
T ss_pred ccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch---hhhhhhhcCceeeee-Ec-----CCCCeEEEEecCCeE
Confidence 1 12 5666668999999998776644 111111233444444 44 999999999999999
Q ss_pred EEEEcCCc
Q 006808 277 YIWYGQNI 284 (630)
Q Consensus 277 ~iwd~~~~ 284 (630)
.++.....
T Consensus 350 ~~i~Fee~ 357 (942)
T KOG0973|consen 350 ALIHFEEK 357 (942)
T ss_pred EEEEcchH
Confidence 99987543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=192.84 Aligned_cols=242 Identities=15% Similarity=0.247 Sum_probs=201.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+.| ..+..+.+....|+++.|-+-+|||.-+|..++.|. |...+..+.|+.+
T Consensus 59 kgav--w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d------------------------ 111 (334)
T KOG0278|consen 59 KGAV--WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD------------------------ 111 (334)
T ss_pred Ccce--eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc------------------------
Confidence 3567 566788888889999999999999999999988775 4444444444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
...|++|+.+.-++|||++..+....-..+|++.|..+.|....+.|++++.|++|++||.+++..++++. ...+|
T Consensus 112 ---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~V 187 (334)
T KOG0278|consen 112 ---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPV 187 (334)
T ss_pred ---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCC
Confidence 67799999999999999998877656667999999999999988899999999999999999999999988 46789
Q ss_pred EEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+++.++++|++|.++. +.|.+||..+...++.+. -...|.+.+++|+...+++++ .|..++.||..++... ..+
T Consensus 188 tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi---~~~ 262 (334)
T KOG0278|consen 188 TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEI---GSY 262 (334)
T ss_pred cceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecC-cceEEEEEeccCCcee---eec
Confidence 9999999999999998 799999999998888876 456789999999998877777 7999999999999865 223
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
..+|.+ .+.|+-|+ |+|...++|++||+|+||....++.
T Consensus 263 nkgh~g-pVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFG-PVHCVRFS-----PDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCC-ceEEEEEC-----CCCceeeccCCCceEEEEEecCCCc
Confidence 334444 44566676 9999999999999999998765543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-23 Score=176.40 Aligned_cols=245 Identities=20% Similarity=0.283 Sum_probs=189.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEE-----EEecccccccccccccccccccccccceeeEEecccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ-----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
.+.| .|.+|||+|+++|+|++|.+|++.-.....+. .+|.-|.+.+..++|-.+ .
T Consensus 89 kgsi--yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------------~ 148 (350)
T KOG0641|consen 89 KGSI--YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------------P 148 (350)
T ss_pred CccE--EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC------------------C
Confidence 3567 67799999999999999999999765433322 234444444444443322 2
Q ss_pred cccccccCCcEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 78 RKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
.. ++.+|++++ +|..|++-|..+|+....+ .+|++-|.++- +-+|-.|++|+.|.+|++||++-..++.++.
T Consensus 149 ~s-----~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 149 ES-----GGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred Cc-----CceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 11 145555544 3456888899999887665 48999998873 3368899999999999999999888887754
Q ss_pred c-------CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 157 A-------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 157 ~-------~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
. ....|.++++.|.|++|++|- ....+||++.++.++.|..|+..|.++.|+|...|+++++ .|..|++-
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~iklt 300 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLT 300 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEe
Confidence 2 125799999999999999987 7899999999999999999999999999999999999988 69999999
Q ss_pred EcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|+...-..........+|....+.+.|. |..-.+++.+.|.++.+|-+
T Consensus 301 dlqgdla~el~~~vv~ehkdk~i~~rwh------~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 301 DLQGDLAHELPIMVVAEHKDKAIQCRWH------PQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ecccchhhcCceEEEEeccCceEEEEec------CccceeeeccCcceEEEecc
Confidence 9876432222234455688888888887 67778889999999999975
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=201.94 Aligned_cols=233 Identities=16% Similarity=0.217 Sum_probs=194.0
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++|+++ .|.+++.++++++.|+.+++|++...+..+++.+|...+.+..|...
T Consensus 220 g~it~~--d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~------------------------- 272 (459)
T KOG0288|consen 220 GNITSI--DFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS------------------------- 272 (459)
T ss_pred CCccee--eecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc-------------------------
Confidence 578445 99999999999999999999999999999999988776665544432
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
...+++|+.|.+|++||+....+..+++.+ +.+.+|..+ ...+++|-.|++|++||+++..+......+. .|+
T Consensus 273 --~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vt 345 (459)
T KOG0288|consen 273 --HSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVT 345 (459)
T ss_pred --ccceeeccccchhhhhhhhhhheecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-cee
Confidence 333899999999999999999888777644 567777765 4568899999999999999999999988665 899
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC----CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
++..+++|..|.+++ .++.++|+++......+... ....+.+.|||++.|+++|+ .||.|+||++.+++..
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE-- 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLE-- 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccCceEE--
Confidence 999999999999988 79999999998877776432 23488999999999999988 5999999999999854
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
......+....+.++.|+ |.|..+++++.++.+.+|
T Consensus 423 -~~l~~s~s~~aI~s~~W~-----~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 -KVLSLSTSNAAITSLSWN-----PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -EEeccCCCCcceEEEEEc-----CCCchhhcccCCcceEec
Confidence 344444444457777777 899999999999999999
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=211.57 Aligned_cols=183 Identities=11% Similarity=0.119 Sum_probs=141.7
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCc--------eeEEeecCCCCe
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS--------LLGKFRASTKGI 162 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v 162 (630)
|+..|.|.+|++.....+..+ .+|.++|.+++|+|+ +.+|++|+.||+|++||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 445678999998876665444 589999999999996 7899999999999999997642 345678899999
Q ss_pred EEEEEccCCCEE-EEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 163 SCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 163 ~~l~~~p~~~~l-~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+++|+|++..+ ++++ ++|++||+++++.+..+. |...|.+++|+|+|.+|++++ .|+.|++||++++... .
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i---~ 203 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIA---S 203 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEE---E
Confidence 999999988765 5666 899999999998777776 667899999999999998887 6999999999987643 1
Q ss_pred eeeecCCcee-eeeEEecCCccCCCCCEEEEEecCC----cEEEEEcCC
Q 006808 240 VLAMEHPAVF-MDCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQN 283 (630)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~ 283 (630)
.+ ..|.... ..+++. ..+++++.+|++++.|+ .|+|||+++
T Consensus 204 tl-~gH~g~~~s~~v~~--~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 204 SF-HIHDGGKNTKNIWI--DGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EE-ecccCCceeEEEEe--eeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 12 2233322 112221 01227889999988775 799999875
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=187.00 Aligned_cols=271 Identities=13% Similarity=0.140 Sum_probs=207.7
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
-|++.+ .|+.+|.+|.+|+.|.+..||-..+|+.+.++.+|.+.+.++... |.
T Consensus 11 RplTqi--KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did----------------~~--------- 63 (327)
T KOG0643|consen 11 RPLTQI--KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDID----------------WD--------- 63 (327)
T ss_pred cccceE--EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEec----------------CC---------
Confidence 477455 999999999999999999999988999999999888776643332 32
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-----CCCcEEEEeCC-------CCce
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPL-------TGSL 151 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----~dg~v~iwd~~-------~~~~ 151 (630)
...+++|+.|.++++||+.+|+++..+. ...+|..+.|+++|++++.+. ..+.|.++|++ ...+
T Consensus 64 --s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 64 --SKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred --cceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc
Confidence 5679999999999999999999987774 558899999999999877664 34689999998 4456
Q ss_pred eEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
...+..+...++.+-|.|-+.+|++|. |.|..||+++|. .+..-..|...|+.+.|+|+..++++++ .|.+-++||
T Consensus 140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~D 218 (327)
T KOG0643|consen 140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLVD 218 (327)
T ss_pred eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCccceeee
Confidence 778888889999999999999999998 999999999985 4555578999999999999999999988 799999999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CC-------------cEEEEEcCCcccc---cccC
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG-------------VCYIWYGQNIEEL---RNTK 291 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg-------------~i~iwd~~~~~~~---~~~~ 291 (630)
..+-..+ .+.. ....+.+++++ |-..+++.|+. +. ..++|++-.-+.+ +.|.
T Consensus 219 ~~tl~v~-----Kty~-te~PvN~aais-----P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF 287 (327)
T KOG0643|consen 219 VRTLEVL-----KTYT-TERPVNTAAIS-----PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF 287 (327)
T ss_pred ccceeeE-----EEee-ecccccceecc-----cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc
Confidence 9987643 2222 22234455554 65555555443 21 1122332222222 3344
Q ss_pred ceeEEeeccCCCcccccchhhhhhhccccccccC
Q 006808 292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
.+...+. |.|+++ .-.+|+.||.+++
T Consensus 288 GPINsvA----fhPdGk----sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 288 GPINSVA----FHPDGK----SYSSGGEDGYVRL 313 (327)
T ss_pred cCcceeE----ECCCCc----ccccCCCCceEEE
Confidence 4444554 899999 8899999887665
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=189.90 Aligned_cols=277 Identities=12% Similarity=0.178 Sum_probs=212.3
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+-......+.+++.|.+.+||.+++|.|+..+.+|.++++++.|++. +.++++
T Consensus 155 aa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s---------------------------~~L~lT 207 (481)
T KOG0300|consen 155 AADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS---------------------------GLLLLT 207 (481)
T ss_pred hhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc---------------------------cceEEE
Confidence 44444568889999999999999999999999999998888777765 788899
Q ss_pred EeCCCeEEEEEc------cCC---------------------------------eeeEEccCCCCCCEEEEEEecCCCEE
Q 006808 92 GTGGGDVLALAV------SAG---------------------------------QLKWRLSDCHPGGVSAISFATHGSCI 132 (630)
Q Consensus 92 ~~~~g~v~iwd~------~~~---------------------------------~~~~~~~~~h~~~v~~~~~s~~g~~l 132 (630)
+++|++-.||.. ... .....-+.+|.+.|.+..|-..|+.+
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM 287 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence 999999999862 110 00111235799999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEee
Q 006808 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSD 209 (630)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp 209 (630)
++++.|.+..+||+++|..+..+.+|....+.++-+|..+++++++ .+.++||.+.. +.+..|.||+..|+++.|..
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec
Confidence 9999999999999999999999999999999999999999999998 69999999843 35778999999999999998
Q ss_pred CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 210 ~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
+.+ +++++ +|++|++||++..+.. +..+....... -+..+ ..+..|+.--.+..|++||+. |..+..
T Consensus 368 dd~-vVSgS-DDrTvKvWdLrNMRsp----lATIRtdS~~N-Rvavs-----~g~~iIAiPhDNRqvRlfDln-G~RlaR 434 (481)
T KOG0300|consen 368 DDR-VVSGS-DDRTVKVWDLRNMRSP----LATIRTDSPAN-RVAVS-----KGHPIIAIPHDNRQVRLFDLN-GNRLAR 434 (481)
T ss_pred CCc-eeecC-CCceEEEeeeccccCc----ceeeecCCccc-eeEee-----cCCceEEeccCCceEEEEecC-CCcccc
Confidence 765 55655 7999999999987643 22332222222 22332 345566666667789999984 333222
Q ss_pred cCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCc--ceeecc
Q 006808 290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG--VLLPMS 367 (630)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~~s 367 (630)
.+.. .-.+|..-|.|++|..+. +-| ++
T Consensus 435 lPrt--------------------------------------------------sRqgHrRMV~c~AW~eehp~cnL-ft 463 (481)
T KOG0300|consen 435 LPRT--------------------------------------------------SRQGHRRMVTCCAWLEEHPACNL-FT 463 (481)
T ss_pred CCcc--------------------------------------------------cccccceeeeeeeccccCccccc-cc
Confidence 2100 011677778888888664 346 89
Q ss_pred ccceecccccee
Q 006808 368 QSLLKSKRGRYV 379 (630)
Q Consensus 368 ~s~d~~~~~w~~ 379 (630)
++.|+.+..|++
T Consensus 464 cGFDR~v~gW~i 475 (481)
T KOG0300|consen 464 CGFDRMVAGWKI 475 (481)
T ss_pred ccccceeeeeEe
Confidence 999999999987
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-24 Score=197.93 Aligned_cols=241 Identities=15% Similarity=0.284 Sum_probs=188.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..|| ..+.||||.++|++|+.|..+++||+.+|.+.+.+.. + .+..+++++|+|.
T Consensus 269 ~~~V--~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~-~~~S~~sc~W~pD------ 323 (519)
T KOG0293|consen 269 SQPV--SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------G-LGFSVSSCAWCPD------ 323 (519)
T ss_pred cCce--EEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------C-cCCCcceeEEccC------
Confidence 3578 7779999999999999999999999999998876642 2 3556778999987
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++|+.|+.+..||+..+.. .....-....|.+++.++||+++++.+.|..|++++..+......+. ...+|
T Consensus 324 ---g~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~i 398 (519)
T KOG0293|consen 324 ---GFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPI 398 (519)
T ss_pred ---CceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCce
Confidence 56699999999999999986543 12222223569999999999999999999999999988766554444 45689
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCC--eEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~--v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
++++++.+|+++++.- ..+++||+...+.++.+.||... +-.-+|-.-. .++++| ++|+.|+||+..++++.
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG-SED~kvyIWhr~sgkll-- 475 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG-SEDSKVYIWHRISGKLL-- 475 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEec-CCCceEEEEEccCCcee--
Confidence 9999999999888765 89999999998899999999753 3344565433 455555 58999999999998844
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
..+..+...+.|+.+++ .+..++|+++.||+|+||....
T Consensus 476 ---~~LsGHs~~vNcVswNP----~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 476 ---AVLSGHSKTVNCVSWNP----ADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---EeecCCcceeeEEecCC----CCHHHhhccCCCCeEEEecCCc
Confidence 34445556667777762 3557899999999999997643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=183.55 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=176.8
Q ss_pred ccceeEeEECC-CCCEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 5 NIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 5 ~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.|.++ +||| ...+++.||+||+||+|+++. |....... ......+.+++|...
T Consensus 29 sIS~l--~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~-----------------~~~~~PvL~v~Wsdd------ 83 (347)
T KOG0647|consen 29 SISAL--AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ-----------------QSHDGPVLDVCWSDD------ 83 (347)
T ss_pred chhee--EeccccCceEEecccCCceEEEEEecCCcccchhh-----------------hccCCCeEEEEEccC------
Confidence 46444 9999 556777899999999999976 33332110 112345667788765
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..+++|+.|+.+++||+.+++.. .+ ..|.++|..+.|-+... .|+|||.|++|+.||++...++.++.. .+
T Consensus 84 ---gskVf~g~~Dk~~k~wDL~S~Q~~-~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-Pe 157 (347)
T KOG0647|consen 84 ---GSKVFSGGCDKQAKLWDLASGQVS-QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PE 157 (347)
T ss_pred ---CceEEeeccCCceEEEEccCCCee-ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cc
Confidence 677999999999999999999764 33 46999999999988665 699999999999999999999988874 45
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeE-ee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc---
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-FS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--- 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~-~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~--- 235 (630)
.++++..-..--.++++.+.|.+|+++++..... .. .-.-.+++|+..++....+.++ -+|.+.+..+..+.+.
T Consensus 158 RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~nF 236 (347)
T KOG0647|consen 158 RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKDNF 236 (347)
T ss_pred eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccCce
Confidence 6777776543333334448999999987653221 11 1234588999988888778887 5899999988875321
Q ss_pred cceeeeeec---CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 236 SASCVLAME---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 236 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
..+|..... ..-+.+..++|. |.-..|++++.||+..+||-+....++
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf~FWDkdar~kLk 287 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTFSFWDKDARTKLK 287 (347)
T ss_pred eEEEeccCCCCCCceEEecceEee-----cccceEEEecCCceEEEecchhhhhhh
Confidence 122322111 112345556666 888999999999999999976554443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-24 Score=200.90 Aligned_cols=295 Identities=15% Similarity=0.151 Sum_probs=213.0
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+| +|++++|++++.++++.+|+|.=|++.+|+...-+.... .+.. .|
T Consensus 144 s~--~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k---------~~--------------------- 190 (479)
T KOG0299|consen 144 SV--TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLK---------SH--------------------- 190 (479)
T ss_pred cc--eEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhh---------hc---------------------
Confidence 55 788999999999999999999999999988653221000 0000 00
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+... ... .+|...+.+++.++||++|++|+.|..|.||+.++.+.++.|.+|.+.|.
T Consensus 191 ---------------------~~~~-k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~ 248 (479)
T KOG0299|consen 191 ---------------------GNPL-KESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS 248 (479)
T ss_pred ---------------------cCCC-CcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee
Confidence 0000 111 27999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+++|-.....+++++ ++|++|++.....+.++.||...|.+|....-++.+-+++ .|+++++|++...... ++
T Consensus 249 ~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~eesql----if 323 (479)
T KOG0299|consen 249 SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEESQL----IF 323 (479)
T ss_pred eeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc-ccceeEEEecccccee----ee
Confidence 999988767777776 8999999999989999999999999998887777666665 6999999999654422 33
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEE-----------eeccCCCcccccch
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL-----------SSSEDVNSKSQKSA 310 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 310 (630)
..+...+.|++|- +..++++|+.+|.|.+|++...+++...+..... +.......+...
T Consensus 324 --rg~~~sidcv~~I------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-- 393 (479)
T KOG0299|consen 324 --RGGEGSIDCVAFI------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-- 393 (479)
T ss_pred --eCCCCCeeeEEEe------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCc--
Confidence 2345566777773 6788999999999999999887776543221110 111222334443
Q ss_pred hhhhhhccccccccCCceeEEEEE-cCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccc
Q 006808 311 TAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 311 ~~~i~~~~~d~~~~~~~~~~~~~~-g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (630)
.+++|+.+|.+++| ... |......+..+. -.+.|++++|+++|+.|++..+.-..+-.|
T Consensus 394 --L~asGS~~G~vrLW-----~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 394 --LLASGSWSGCVRLW-----KIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred --eEEecCCCCceEEE-----EecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 78888888876664 332 222223333333 557799999999999773444444444334
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=212.56 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=157.7
Q ss_pred CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCc
Q 006808 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 114 ~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~ 190 (630)
.||.+.|.++.|+.+ ++|++++.|.+|++|++....|++.|. |...|+|++|+| |.+++++|+ |.|+||++...+
T Consensus 366 ~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 366 KGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK 443 (712)
T ss_pred hccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence 489999999999975 589999999999999999999999999 899999999999 788999999 999999998776
Q ss_pred eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeee-----ecCCceeeeeEEecCCccCCCCC
Q 006808 191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-----MEHPAVFMDCRCIDNGGVDDAGL 265 (630)
Q Consensus 191 ~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 265 (630)
.+. ...-..-|++++|.|+|++.++|+ .+|.+++|+....+......+.. ..+. .+....+++ .+..
T Consensus 444 Vv~-W~Dl~~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p-----~~~~ 515 (712)
T KOG0283|consen 444 VVD-WNDLRDLITAVCYSPDGKGAVIGT-FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFP-----GDPD 515 (712)
T ss_pred eEe-ehhhhhhheeEEeccCCceEEEEE-eccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecC-----CCCC
Confidence 554 333457899999999999999988 59999999998876542111111 1122 455566664 3344
Q ss_pred EEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEE
Q 006808 266 YVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI 345 (630)
Q Consensus 266 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (630)
.|++.+.|.+|+|||+...+.+..++.....
T Consensus 516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~------------------------------------------------- 546 (712)
T KOG0283|consen 516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT------------------------------------------------- 546 (712)
T ss_pred eEEEecCCCceEEEeccchhhhhhhcccccC-------------------------------------------------
Confidence 6888899999999999766665544422100
Q ss_pred eccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 346 LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 346 ~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..-....|+.||++| +++|.|.-+++|+.
T Consensus 547 ----~SQ~~Asfs~Dgk~I-Vs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 547 ----SSQISASFSSDGKHI-VSASEDSWVYIWKN 575 (712)
T ss_pred ----CcceeeeEccCCCEE-EEeecCceEEEEeC
Confidence 112455688899999 99999999999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=182.20 Aligned_cols=244 Identities=14% Similarity=0.189 Sum_probs=190.0
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCc
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHK 190 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~ 190 (630)
...+.|.++.|+++|.++++++.|.++++||..++++++++..++..+..++|......++.++ .+|+..++.+.+
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 3567899999999999999999999999999999999999998888999999987777777666 499999999999
Q ss_pred eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEE
Q 006808 191 KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (630)
Q Consensus 191 ~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 270 (630)
.++-|.||...|.+++.+|-+..+++++ .|++|++||++..+.+ ..+..... .+++|. |.|.++|++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S-~D~tvrLWDlR~~~cq---g~l~~~~~----pi~AfD-----p~GLifA~~ 158 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSS-LDKTVRLWDLRVKKCQ---GLLNLSGR----PIAAFD-----PEGLIFALA 158 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecc-cCCeEEeeEecCCCCc---eEEecCCC----cceeEC-----CCCcEEEEe
Confidence 9999999999999999999999999988 6999999999977644 22222222 345565 999999999
Q ss_pred ecCCcEEEEEcCCccc--ccccCce---eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEE
Q 006808 271 SETGVCYIWYGQNIEE--LRNTKAT---KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI 345 (630)
Q Consensus 271 s~dg~i~iwd~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~ 345 (630)
...+.|++||++.... ...+... ...+ ....|+|+++ +|+.+...+.++ ++.++... ..+++
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew-~~l~FS~dGK----~iLlsT~~s~~~-----~lDAf~G~---~~~tf 225 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEW-TDLEFSPDGK----SILLSTNASFIY-----LLDAFDGT---VKSTF 225 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccce-eeeEEcCCCC----EEEEEeCCCcEE-----EEEccCCc---EeeeE
Confidence 9888999999887632 2222211 2222 2334899999 888887765333 33344332 33445
Q ss_pred eccCCCc---EEEeecCCcceeeccccceeccccceeccceee
Q 006808 346 LVNSGED---INLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTA 385 (630)
Q Consensus 346 ~~h~~~v---~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~ 385 (630)
.++.+.- ....|+|||+++ ++|+.|+++.+|+++.+..+
T Consensus 226 s~~~~~~~~~~~a~ftPds~Fv-l~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTPDSKFV-LSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred eeccCCCCcceeEEECCCCcEE-EEecCCCcEEEEEcCCCcEe
Confidence 5554443 788999999999 99999999999999765333
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-23 Score=196.96 Aligned_cols=291 Identities=13% Similarity=0.150 Sum_probs=210.0
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee----eEEccCCCCCCEEEEEEecCCCEEEEEeCCCc
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSCIYSAGADGM 140 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~----~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 140 (630)
...++.++..+. |..+++|+.|.+|++||++.-.. ...+.......|.++.|++.|..|++.+....
T Consensus 167 tk~Vsal~~Dp~---------GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 167 TKIVSALAVDPS---------GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEEEEeeecCC---------CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 445666666555 77799999999999999975432 22334445567999999999999999988889
Q ss_pred EEEEeCCCCceeEE-------------eecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCce-eeEee-----cC
Q 006808 141 VCEIDPLTGSLLGK-------------FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQKFS-----GH 198 (630)
Q Consensus 141 v~iwd~~~~~~~~~-------------~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~-~~~~~-----~h 198 (630)
.+++|-. |..+.. -++|...++|.+|+|..+ .+++++ |++++||+.+.+. ...++ +.
T Consensus 238 akl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 238 AKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999944 433222 246888999999999643 455665 9999999987642 23332 23
Q ss_pred CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 199 ~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
.-+++.++|+|+|+.+++++ .||.|.+|+..+.......++......+..++++.|+ ++|++|++-+.|+.+++
T Consensus 317 Rv~~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ccCceeeecCCCcchhhhcc-cCCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceee
Confidence 45789999999999998888 6999999998766544334444444455678889898 99999999999999999
Q ss_pred EEcCCccc-ccccCcee-EEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEe
Q 006808 279 WYGQNIEE-LRNTKATK-ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356 (630)
Q Consensus 279 wd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~ 356 (630)
||++..+. +....... .--.....|+|+.+ .|++|..-..-.. .+ .+..|.......++++-.....|..+.
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k----li~TGtS~~~~~~-~g-~L~f~d~~t~d~v~ki~i~~aSvv~~~ 464 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK----LILTGTSAPNGMT-AG-TLFFFDRMTLDTVYKIDISTASVVRCL 464 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCce----EEEecccccCCCC-Cc-eEEEEeccceeeEEEecCCCceEEEEe
Confidence 99987753 22211111 01112233899988 8888877421111 22 455565666667777778888899999
Q ss_pred ecCCcceeeccccceeccccce
Q 006808 357 CSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 357 ~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
|+|.=..| +.|+.||+++++-
T Consensus 465 WhpkLNQi-~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 465 WHPKLNQI-FAGSGDGTAHVYY 485 (641)
T ss_pred ecchhhhe-eeecCCCceEEEE
Confidence 99998888 7788899988763
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-22 Score=180.51 Aligned_cols=223 Identities=14% Similarity=0.171 Sum_probs=174.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC--EEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.++++|+.|.+|+|||+++......+. .|.+.|+++.|.+.-. +|++|+.||.|.+|+.....++.++++|.+.|+
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 6789999999999999999988886665 5999999999998654 899999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
.++++|.|++.++.+ +.+++||+-+|+.-..++- ....+.+.|+|.|.+|+.++ -+.|-+|.+...... .
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~ 203 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----R 203 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----h
Confidence 999999999877766 7999999999886544432 22334599999999988877 446999999886533 1
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
.+..+.. +.++.| -++..|++|..|+.|.+||..++..+..
T Consensus 204 ~i~~~~r-~l~~~~------l~~~~L~vG~d~~~i~~~D~ds~~~~~~-------------------------------- 244 (362)
T KOG0294|consen 204 EIENPKR-ILCATF------LDGSELLVGGDNEWISLKDTDSDTPLTE-------------------------------- 244 (362)
T ss_pred hhhcccc-ceeeee------cCCceEEEecCCceEEEeccCCCcccee--------------------------------
Confidence 2222322 333434 3688999999999999999865433211
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEe--ecCCcceeeccccceeccccceec
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN--CSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~--~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+.+|...|-.+. -.|++.+| +|.|.||.|++|++.
T Consensus 245 -----------------------~~AH~~RVK~i~~~~~~~~~~l-vTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 245 -----------------------FLAHENRVKDIASYTNPEHEYL-VTASSDGFIKVWDID 281 (362)
T ss_pred -----------------------eecchhheeeeEEEecCCceEE-EEeccCceEEEEEcc
Confidence 224555555554 24677888 999999999999984
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=180.07 Aligned_cols=250 Identities=12% Similarity=0.044 Sum_probs=176.4
Q ss_pred CCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccC---CCEEEEeC--CeEEEEECC
Q 006808 114 DCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCS 187 (630)
Q Consensus 114 ~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~---~~~l~~~~--g~i~lwd~~ 187 (630)
.+|...|.++.|-| |...|.+++-|.++++||..+.+....|+ -.+.|++-+++|- ..++|+|. -.|++.|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47888999999999 66788999999999999999999888888 4567899999983 34566665 589999999
Q ss_pred CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc-c--------ccee-eeeecCCceeeeeEEecC
Q 006808 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-Q--------SASC-VLAMEHPAVFMDCRCIDN 257 (630)
Q Consensus 188 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~-~--------~~~~-~~~~~~~~~~~~~~~~~~ 257 (630)
+|....++.||...|.++.|+|...+++++++.||.|++||++...- . .... ......+..-+..++|.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t- 255 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT- 255 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec-
Confidence 99999999999999999999999999888888999999999986520 0 0001 11111122233445555
Q ss_pred CccCCCCCEEEEEecCCcEEEEEcCCcccc-cccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcC
Q 006808 258 GGVDDAGLYVLAISETGVCYIWYGQNIEEL-RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (630)
Q Consensus 258 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (630)
.++.++++++.|.++++|+..+|+.- +..-+...... .++.- .+-++..+-.+....+.-+..+..
T Consensus 256 ----Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~----~~~~~-----~~~~~~s~vfv~~p~~~~lall~~ 322 (397)
T KOG4283|consen 256 ----SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT----TSFAV-----HIQSMDSDVFVLFPNDGSLALLNL 322 (397)
T ss_pred ----ccchhhhhccCccceEEeecccCccccccccccccccc----ccceE-----EEeecccceEEEEecCCeEEEEEc
Confidence 79999999999999999998887532 22111100000 00000 011222221111111122223333
Q ss_pred ccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.....+..+.+|...+.|.++.|+-+.. .+|+.|+++..|..
T Consensus 323 ~sgs~ir~l~~h~k~i~c~~~~~~fq~~-~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 323 LEGSFVRRLSTHLKRINCAAYRPDFEQC-FTGDMNGNIYMWSP 364 (397)
T ss_pred cCceEEEeeecccceeeEEeecCchhhh-hccccCCccccccc
Confidence 4456667788998899999999999998 99999999999954
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=191.69 Aligned_cols=254 Identities=17% Similarity=0.273 Sum_probs=182.2
Q ss_pred cccceeEeEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccc-cccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.|+.+ .+-|.. ..+|+++..+.|.|||..+..-.....+ .+.|++ ..||.. ....+.|++..
T Consensus 125 gEVnRa--RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------~~~Pdl~L~gH~~-eg~glsWn~~~---- 189 (422)
T KOG0264|consen 125 GEVNRA--RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------ECRPDLRLKGHEK-EGYGLSWNRQQ---- 189 (422)
T ss_pred ccchhh--hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------cCCCceEEEeecc-ccccccccccc----
Confidence 344334 666754 5777888899999999865432221110 111110 235554 24458888776
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCee------eEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCC--CCcee
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL--TGSLL 152 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~------~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~--~~~~~ 152 (630)
...+++|+.++.|++||+..... ....+.+|...|..++|++ +...|++++.|+.+.|||++ +.++.
T Consensus 190 ----~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 190 ----EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred ----ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence 66799999999999999975432 3455678999999999999 55678899999999999999 56677
Q ss_pred EEeecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 153 GKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
....+|.++|.|++|+| ++..||+|+ ++|.+||+++- +++.++.+|...|.+|.|+|....++++++.|+.+.+||
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 77889999999999999 566778887 89999999985 468889999999999999998765555555799999999
Q ss_pred cCCCccc---------cceeeeeec-CCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcC
Q 006808 229 TDGVKKQ---------SASCVLAME-HPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 229 ~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~ 282 (630)
+..-... +...++..+ |...+.... |+ |.. -.|++.+.|+.++||...
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs-Wn-----p~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS-WN-----PNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCccccccccc-CC-----CCCCeEEEEecCCceEEEeecc
Confidence 8653211 011223322 333333333 33 655 456778899999999864
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=206.14 Aligned_cols=238 Identities=14% Similarity=0.224 Sum_probs=179.4
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcE----EEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQV----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
++..++-..++.++. ..++||.+..... ...+++ +......+..+.|.... .
T Consensus 45 Is~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~---------------kqn~~~S~~DVkW~~~~--------~ 100 (839)
T KOG0269|consen 45 ISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKT---------------KQNKFYSAADVKWGQLY--------S 100 (839)
T ss_pred EeecCCcceeEEecc-cceeeEeeCcccCCcceeeeccc---------------ccceeeehhhcccccch--------h
Confidence 366777777777765 3677776653321 111110 12223345567888655 7
Q ss_pred cEEEEEeCCCeEEEEEccC--CeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 87 SLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~--~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
++|++++.+|.|.+||+.. .......+..|...|+++.|++ ...+|++||.||+|++||++..+...++.+....|.
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 8999999999999999987 2222245568999999999998 455789999999999999999999999998888999
Q ss_pred EEEEcc-CCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 164 CMAVSS-DGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 164 ~l~~~p-~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+.|+| .+.+++++. |.+++||++... +...+..|.++|.++.|+|++.+|++|| .|+.|+||++.+.+.. .
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~---~ 256 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAK---P 256 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCcc---c
Confidence 999999 567777776 999999998754 6778899999999999999999999998 7999999999987654 2
Q ss_pred eeeecCCceeeeeEEecCCccCCCC-CEEEEEec--CCcEEEEEcC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISE--TGVCYIWYGQ 282 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~--dg~i~iwd~~ 282 (630)
...+.... .+..+.|. |.. .+|++++. |-.|+|||+.
T Consensus 257 ~~tInTia-pv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 257 KHTINTIA-PVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred eeEEeecc-eeeeeeec-----cCccchhhhhhccccceEEEEeec
Confidence 33333333 34445554 554 45666654 6789999984
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=190.89 Aligned_cols=281 Identities=16% Similarity=0.171 Sum_probs=208.0
Q ss_pred EeeCC-CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC-eEE
Q 006808 22 ICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG-DVL 99 (630)
Q Consensus 22 s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g-~v~ 99 (630)
+++.| ..+.+||+.+|.....+++..... +|.... .++.+++++.... .|.
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~-----------~~sl~~----------------l~~~yllsaq~~rp~l~ 64 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ-----------AASLTA----------------LNNEYLLSAQLKRPLLH 64 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCccccc-----------chhhhh----------------hchhheeeecccCcccc
Confidence 34444 459999999999998887541110 000000 0144556665544 489
Q ss_pred EEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-
Q 006808 100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178 (630)
Q Consensus 100 iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~- 178 (630)
+|.+.......... --.++|.+++-+|.|.+++.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+-||.++++|+
T Consensus 65 vw~i~k~~~~~q~~-v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 65 VWEILKKDQVVQYI-VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred ccccCchhhhhhhc-ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 99988765543221 2457899999999999999988999999999999999999999999999999999999999999
Q ss_pred -CeEEEEECC---------CCceeeEeecCCCCeEEEEEeeC--CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 179 -GQLKTFNCS---------DHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 179 -g~i~lwd~~---------~~~~~~~~~~h~~~v~~l~~sp~--~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|.|.+|.+. +-+++..|..|+-+|+.+...+. ..++++++ .|+++++||+..+... ..+..+
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL-----lti~fp 217 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL-----LTITFP 217 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee-----EEEecC
Confidence 899999763 23567889999999999988764 35788887 7999999999998744 222222
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCC
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 326 (630)
..+.++... |.+..+.+|+.+|.|.+.++......+.. +.
T Consensus 218 -~si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~~~------v~---------------------------- 257 (476)
T KOG0646|consen 218 -SSIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQSAG------VN---------------------------- 257 (476)
T ss_pred -CcceeEEEc-----ccccEEEecCCcceEEeeehhcCCccccc------cc----------------------------
Confidence 334555565 88999999999999999886433210000 00
Q ss_pred ceeEEEEEcCccCceeeEEeccCC--CcEEEeecCCcceeeccccceeccccceeccc
Q 006808 327 SVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
...+......+..+.+|.+ +|.|++++-||.+| +||+.|+.+.+|++.++
T Consensus 258 -----~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL-lSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 258 -----QKGRHEENTQINVLVGHENESAITCLAISTDGTLL-LSGDEDGKVCVWDIYSK 309 (476)
T ss_pred -----ccccccccceeeeeccccCCcceeEEEEecCccEE-EeeCCCCCEEEEecchH
Confidence 0000112334556778888 89999999999999 99999999999999765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=185.96 Aligned_cols=237 Identities=17% Similarity=0.196 Sum_probs=195.3
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+.|+|+...+++++.|-.|+||......+......|...+......|. +.+
T Consensus 265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t---------------------------geY 317 (506)
T KOG0289|consen 265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT---------------------------GEY 317 (506)
T ss_pred EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC---------------------------CcE
Confidence 55699999999999999999999999888777777777777766555555 899
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCC-CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
|++++.+|...+.|++++..+...... ..-.+++.+|+|||-.|.+|..||.|++||+.++..+..|.+|.++|..++|
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe
Confidence 999999999999999999887555421 2245899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
+.+|.+|+++. +.|++||++.-+...++.... .++.++.|.+.|.+|+.+| .+=+|++++-.+.. +.++..+.
T Consensus 398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~---W~~~~~~~ 473 (506)
T KOG0289|consen 398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKS---WTEIKELA 473 (506)
T ss_pred ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEeccccc---ceeeehhh
Confidence 99999999998 779999999988888776433 4799999999999999987 35555555533332 33555555
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
......+.++|. ....++++++.|..++++.+
T Consensus 474 ~~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DHSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hcccccceeeec-----ccceEEeeccchhheEEeec
Confidence 445566778887 77899999999999888754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=197.82 Aligned_cols=267 Identities=18% Similarity=0.257 Sum_probs=196.5
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..|+.+ ++. ++..++++|.||++++|+-..++.+. .+.+ |.+...+.+++.+.+
T Consensus 15 ~DVr~v--~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-----------------~~g~i~~~i~y~e~~---- 70 (745)
T KOG0301|consen 15 SDVRAV--AVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEG-----------------PKGFIANSICYAESD---- 70 (745)
T ss_pred cchhee--Eec-CCeEEeecCCCCceeeeeccCcccccceeccc-----------------Ccceeeccceecccc----
Confidence 345444 443 44589999999999999976555443 2332 222222224444322
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+..+++|+.|+.|.+|.+.+......+ .+|...|+++....++. +++||.|.++++|-. +++...+.+|...
T Consensus 71 ----~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as 142 (745)
T KOG0301|consen 71 ----KGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS 142 (745)
T ss_pred ----CcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchh
Confidence 556899999999999999998888555 68999999999877776 999999999999974 6777789999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
|.++++-|.+ .+++|+ .+|++|.- ++.+++|.+|..-|+++++-+++. |++++ .||.|+.|++... +
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~ge------~ 211 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLDGE------V 211 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEeccCc------e
Confidence 9999999988 666766 79999985 788999999999999999998764 56777 7999999999544 3
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc-eeEEeeccCCCcccccchhhhhhhcc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-TKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
++....+..++.++... +++..|+++++|++++||+.....+.-.++. ..+.+.+ -..+ -|++|+
T Consensus 212 l~~~~ghtn~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~----L~Ng-----DIvvg~ 277 (745)
T KOG0301|consen 212 LLEMHGHTNFVYSISMA-----LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKV----LLNG-----DIVVGG 277 (745)
T ss_pred eeeeeccceEEEEEEec-----CCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEE----eeCC-----CEEEec
Confidence 44544444454444433 6789999999999999999873333333332 2233332 1222 689999
Q ss_pred ccccccCCc
Q 006808 319 LQDIVKPAS 327 (630)
Q Consensus 319 ~d~~~~~~~ 327 (630)
+||.++++.
T Consensus 278 SDG~VrVfT 286 (745)
T KOG0301|consen 278 SDGRVRVFT 286 (745)
T ss_pred cCceEEEEE
Confidence 999877754
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-22 Score=173.22 Aligned_cols=237 Identities=16% Similarity=0.238 Sum_probs=177.2
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCC---cEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
...--|+.||||+.|++|+|+.+.+. +.+.++.+|.+++..+.|..+ . .+.+
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP------------------k-------~G~i 72 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP------------------K-------FGTI 72 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc------------------c-------cCcE
Confidence 34446899999999999999998754 457788887776665544432 1 1899
Q ss_pred EEEEeCCCeEEEEEccCCeeeE-EccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCC---ceeEEeecCCCCe
Q 006808 89 LVLGTGGGDVLALAVSAGQLKW-RLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGI 162 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~-~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v 162 (630)
|++|+.||.|.||.-.+++-.. .....|.+.|++++|.|. |-.|++++.||.|.+.+++.. ...+....|.-.|
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 9999999999999998885321 122469999999999995 456899999999999998754 2223356788899
Q ss_pred EEEEEccC---C-----------CEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeCC----cEEEEEeeC
Q 006808 163 SCMAVSSD---G-----------KMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNG----KYVLSSAVG 220 (630)
Q Consensus 163 ~~l~~~p~---~-----------~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~----~~l~~~~~~ 220 (630)
++++|.|. | +.|++|+ +.|+||+..+++ .-+++.+|...|+.++|.|.- .++++++ .
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-q 231 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS-Q 231 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec-C
Confidence 99999985 4 5688887 899999988764 345688999999999999964 4677776 7
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
||++.||........ ....+.-..+..+..+ .|+ +.|+.|+.++.|+.+.+|.-
T Consensus 232 Dg~viIwt~~~e~e~-wk~tll~~f~~~~w~v-SWS-----~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEP-WKKTLLEEFPDVVWRV-SWS-----LSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred CCcEEEEEecCccCc-ccccccccCCcceEEE-EEe-----ccccEEEEecCCcEEEEEEe
Confidence 999999988743221 1222222223333333 343 78999999999999999963
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-22 Score=193.07 Aligned_cols=288 Identities=14% Similarity=0.182 Sum_probs=213.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++.|+++ +.+|.|.+||+|+.||+|+||.+.+|.|+.++.- ...+.|++|+|...
T Consensus 400 tg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-------------------d~~I~~vaw~P~~~---- 454 (733)
T KOG0650|consen 400 TGLVRSI--SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-------------------DSEIRSVAWNPLSD---- 454 (733)
T ss_pred CCeEEEE--EecCCcceeeecCCCCcEEEEEeecceEEEEEee-------------------cceeEEEEecCCCC----
Confidence 4667444 8889999999999999999999999999987752 23566777776542
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC------------------------------------e-eeEEccCCCCCCEEEEEE
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG------------------------------------Q-LKWRLSDCHPGGVSAISF 125 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~------------------------------------~-~~~~~~~~h~~~v~~~~~ 125 (630)
..+|+++.... +.|.+..-| + .+ .+...|...|..+.|
T Consensus 455 ---~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v-~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 455 ---LCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGV-CIVIKHPKSIRQVTW 529 (733)
T ss_pred ---ceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccce-EEEEecCCccceeee
Confidence 23333333322 444333211 0 01 111247789999999
Q ss_pred ecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCC
Q 006808 126 ATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGA 201 (630)
Q Consensus 126 s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~ 201 (630)
+..|.+|++...+ ..|.|+++...+....|+...+.|.++.|+|...+|++++ ..|++||+.....++.+......
T Consensus 530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw 609 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW 609 (733)
T ss_pred ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee
Confidence 9999999987653 4789999988777777877788999999999999999998 89999999998888887767788
Q ss_pred eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 202 v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|..++.+|.|..|+.++ .|+.+..+|+.-.... ...+.++...++.+.|. +.=.++++|+.||.+.||..
T Consensus 610 iS~msihp~GDnli~gs-~d~k~~WfDldlsskP----yk~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSKP----YKTLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eeeeeecCCCCeEEEec-CCCeeEEEEcccCcch----hHHhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEee
Confidence 99999999999999988 6999999999876543 34455666666667766 66678999999999999875
Q ss_pred CCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCC----cEEEee
Q 006808 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE----DINLNC 357 (630)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~----v~~~~~ 357 (630)
.-.+-+-.. .....+..+.+|... |+.+.|
T Consensus 680 ~VY~Dl~qn----------------------------------------------pliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 680 MVYNDLLQN----------------------------------------------PLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred eeehhhhcC----------------------------------------------CceEeeeeccCceeecccceEeecc
Confidence 322211100 011122234455444 889999
Q ss_pred cCCcceeeccccceeccccc
Q 006808 358 SQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 358 s~dg~~l~~s~s~d~~~~~w 377 (630)
+|.-..| +|+++|+++|+|
T Consensus 714 HP~qpWL-fsAGAd~tirlf 732 (733)
T KOG0650|consen 714 HPRQPWL-FSAGADGTIRLF 732 (733)
T ss_pred cCCCceE-EecCCCceEEee
Confidence 9999999 999999999998
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=199.45 Aligned_cols=235 Identities=14% Similarity=0.223 Sum_probs=187.3
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|.|+|+++.+|+.||.|++|+..+-. ....+.. .+..+.+++- . .+.
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~------------------~g~~v~~ia~---~--------s~~ 68 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI------------------SGELVSSIAC---Y--------SNH 68 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc------------------cCceeEEEee---c--------ccc
Confidence 45999999999999999999999876542 1111110 1112222222 1 567
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
|++|+.+++|.+|....++.- .++...+-++++++|+.+|++++.||.|-.|++.++.+......+++|.++|.++.|+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~-~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEED-TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eEEeeccceEEEeeCCCCCcc-ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence 999999999999999888764 2333466799999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecC--------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
|.+.+||+.+ |.|++||+.++.+..++.+- ...+..++|+|+|..|++.+ -|+.|++|+.......
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~--- 223 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQ--- 223 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeh---
Confidence 9999999987 99999999999877666432 34577899999987777777 4999999999887654
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
..+...+....+.++.|+ |.|.|||+++.+|.|.|||.++
T Consensus 224 f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWS-----PNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecccccccceEEEEEc-----CCCcEEeeeccCCcEEEEeccc
Confidence 333444444446667776 9999999999999999999985
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=204.94 Aligned_cols=235 Identities=15% Similarity=0.218 Sum_probs=181.4
Q ss_pred EECC-CCCEEEEeeCCCcEEEEECCC---CcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 12 SFSP-ALDYFAICSGDARIKIWDTLK---GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 12 ~fs~-dg~~las~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.|+. +.++||+|+..|.|.+||+.. .+.+..|..|. ..++++.|++.. ..
T Consensus 94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~------------------Rs~~~ldfh~te--------p~ 147 (839)
T KOG0269|consen 94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHE------------------RSANKLDFHSTE--------PN 147 (839)
T ss_pred ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhc------------------cceeeeeeccCC--------cc
Confidence 5654 457999999999999999976 34444555443 345677777776 67
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM 165 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l 165 (630)
+|++|+.||.|++||++..+...++. +....|+++.|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred EEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence 89999999999999999988875654 6788999999999 6778999999999999999865 6777899999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeec-CCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.|+|++.+||+|+ +.|+|||..+++.-....- ...+|.++.|-|..++.+++++ .|-.|+|||++..-.+ .
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP----~ 302 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP----Y 302 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc----c
Confidence 9999999999999 8999999987654333332 3468999999998876555443 3668999999886543 2
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
..+..+...++.++|. +.|...+.+++.||.+..-..
T Consensus 303 ~t~~eH~~~vt~i~W~----~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWD----SGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred eeeeccCccccceecc----CCCceeeEeecCccHHHHhhh
Confidence 3333444455556664 145678899999998764433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-21 Score=169.02 Aligned_cols=226 Identities=15% Similarity=0.262 Sum_probs=187.8
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.|..+ +|+| ...+||+++.|.+|++||..+++++..+.... ...-+.|.|.
T Consensus 65 ~svdql--~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-------------------eni~i~wsp~------ 117 (313)
T KOG1407|consen 65 DSVDQL--CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-------------------ENINITWSPD------ 117 (313)
T ss_pred cchhhh--eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-------------------cceEEEEcCC------
Confidence 345444 7777 45799999999999999999999988765322 1223556655
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+++++..+..|.+.|.++.+.+... .....+..++|+-++.+|+.....|+|.|.....-+++..+++|....
T Consensus 118 ---g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 118 ---GEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred ---CCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence 788999999999999999988876554 345678899999888888888888999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.|+.|+|+|+++|+|+ ..+.+||+..--+++.+..+.-+|+.++||.+|++|++++ +|..|-|=++.++.. +
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~-----~ 266 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDR-----V 266 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCe-----E
Confidence 9999999999999999 6899999999889999999999999999999999999987 799999999999873 4
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecC
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 273 (630)
..+++.+....+.|. |...+||-++.|
T Consensus 267 ~eI~~~~~t~tVAWH------Pk~~LLAyA~dd 293 (313)
T KOG1407|consen 267 WEIPCEGPTFTVAWH------PKRPLLAYACDD 293 (313)
T ss_pred EEeeccCCceeEEec------CCCceeeEEecC
Confidence 455666666666665 677777777654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=186.76 Aligned_cols=269 Identities=16% Similarity=0.141 Sum_probs=188.3
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEEeCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGG 95 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~ 95 (630)
+..+++++.|+.|++||+.+++.+..+..+.. + .++.|.+. +..+ ++++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~------------------~~l~~~~d---------g~~l~~~~~~~ 52 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-P------------------RGITLSKD---------GKLLYVCASDS 52 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-C------------------CceEECCC---------CCEEEEEECCC
Confidence 35788999999999999999988877763321 2 23455443 4444 566778
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
+.|++||+.+++....+.. + ..+..++|+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|+|.++
T Consensus 53 ~~v~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPS-G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred CeEEEEECCCCcEEEeccC-C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 9999999999887655542 3 335788999999987655 5689999999999888777763 3346889999999999
Q ss_pred EEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC----c
Q 006808 175 ATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP----A 247 (630)
Q Consensus 175 ~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~ 247 (630)
+++. ..+++||..+++....+.. ...+.+++|+|+++++++++..++.|++||+.+++.. ..+..... .
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~---~~~~~~~~~~~~~ 205 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI---KKITFEIPGVHPE 205 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee---eeeeecccccccc
Confidence 8887 3577889988876655442 3345789999999988776646899999999987633 11111110 0
Q ss_pred -eeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccC
Q 006808 248 -VFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 248 -~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
.....+.++ |++++++++ +.++.+.+||..+++.+...
T Consensus 206 ~~~~~~i~~s-----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----------------------------------- 245 (300)
T TIGR03866 206 AVQPVGIKLT-----KDGKTAFVALGPANRVAVVDAKTYEVLDYL----------------------------------- 245 (300)
T ss_pred cCCccceEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 111123444 899886554 45678999998665432110
Q ss_pred CceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 326 ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 326 ~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+...+.+++|+|+|.+|.++++.++.+++|++..
T Consensus 246 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 246 ---------------------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ---------------------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00113568899999999833446689999999864
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=179.33 Aligned_cols=242 Identities=16% Similarity=0.289 Sum_probs=191.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|+++ .|+|....|++|+.|++|++||.......+.++... ....+.++.|.|.
T Consensus 173 devn~l--~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q----------------d~~~vrsiSfHPs------- 227 (430)
T KOG0640|consen 173 DEVNDL--DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ----------------DTEPVRSISFHPS------- 227 (430)
T ss_pred Ccccce--eecchhheEEeccCCCeEEEEecccHHHHHHHHHhh----------------ccceeeeEeecCC-------
Confidence 467555 999999999999999999999987544433333111 1224455655554
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEc--cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec-CCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~--~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~ 160 (630)
|.+|++|+....+++||+.+-++.... ..+|++.|+++.+++.|++.++++.||.|++||--+++|+.++.. |.+
T Consensus 228 --GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 228 --GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred --CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence 899999999999999999998875333 357999999999999999999999999999999999999998754 544
Q ss_pred -CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCC--C---CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 -GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--G---AVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 -~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~--~---~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.|.+..|..+|+++++.+ ..+++|.+.+++++..+.|-. + .-+...|+....|++.-....+.+.-||.++.
T Consensus 306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 899999999999999988 799999999999999887542 1 23456788888888875544567899999988
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
... ....++|.+.+ +....+ |.+.-+++|+.|-++++|--
T Consensus 386 dr~---~l~slgHn~a~-R~i~HS-----P~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 386 DRV---ALLSLGHNGAV-RWIVHS-----PVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhh---hhcccCCCCCc-eEEEeC-----CCCCceeeecccceeeeeee
Confidence 755 45666666544 445555 88999999999999999964
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=175.77 Aligned_cols=246 Identities=15% Similarity=0.170 Sum_probs=177.1
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+.||.|++.|.+||+|+.||.|.|||+.|...-..+.+|. .++++++|.+. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~------------------~pi~sl~WS~d---------gr 78 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV------------------RPITSLCWSRD---------GR 78 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc------------------cceeEEEecCC---------CC
Confidence 5789999999999999999999999999887666565443 35667777665 77
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeecCC----CCe
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRAST----KGI 162 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~v 162 (630)
.|++++.|..|.+||+..|.+..++ ...++|+.+.|+|... .++++-.+..-.+-++..++...--.... ...
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEE--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence 8999999999999999999988777 3678999999999443 33333334445555554422111101111 122
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc----
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---- 235 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~---- 235 (630)
.+..|.+.|+++++|. |.+.++|..+.+++..++-.. ..|.++.|+..|++|+.-+ .|+.|+.|++..--..
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCccC
Confidence 3446889999999998 999999999999998887655 7899999999999999988 5999999998632111
Q ss_pred cceeeeeec--CCceeeeeEEecCCccCCCCCEEEEEecC-CcEEEEEcCCccccc
Q 006808 236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISET-GVCYIWYGQNIEELR 288 (630)
Q Consensus 236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~ 288 (630)
.......+. -+......++|+ .+|.|+++++.. -.++||.-..|..++
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs-----~dgeYv~a~s~~aHaLYIWE~~~GsLVK 286 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFS-----GDGEYVCAGSARAHALYIWEKSIGSLVK 286 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeec-----CCccEEEeccccceeEEEEecCCcceee
Confidence 000001111 122334555665 899999998763 479999987776654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=184.47 Aligned_cols=290 Identities=11% Similarity=0.111 Sum_probs=211.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCC--CcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .++.|+|...+|++|+.||+++||.+.. ...++.+.-... ++.+..+.+.+
T Consensus 213 ~~~I--~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f------------------Pi~~a~f~p~G--- 269 (514)
T KOG2055|consen 213 HGGI--TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF------------------PIQKAEFAPNG--- 269 (514)
T ss_pred cCCc--eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccC------------------ccceeeecCCC---
Confidence 3678 4459999999999999999999998753 223333332222 33344444431
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeE-EccCCCC-CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~-~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
...+++++...-++.||+.+.+... ....++. ..+..+..++++++|+..|..|.|.+....+++.+.+++ -
T Consensus 270 -----~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-i 343 (514)
T KOG2055|consen 270 -----HSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-I 343 (514)
T ss_pred -----ceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-e
Confidence 3378888888889999999887631 2222333 357788999999999999999999999999999999988 4
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCC-CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.+.|..++|+.+++.|++++ |.|++||++...++.++....+ .-++++.++++.||++++ ..|.|.|||..+....
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFAS 422 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc-CcceEEEeccchhhcc
Confidence 67899999999998877765 9999999999999988863322 346778889999999887 7999999996553211
Q ss_pred -cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec--CCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhh
Q 006808 236 -SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312 (630)
Q Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (630)
....+..+..-...++.+.|+ |++..||.+|. ...+++-.+.+.......+.
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn-----~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-------------------- 477 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFN-----HDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-------------------- 477 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeC-----cchhhhhhhhhccccceEEEeccceeeeccCCC--------------------
Confidence 112445555556667778887 99999888876 44566655443332221110
Q ss_pred hhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 313 ~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
....-+.|.|++|||.|-++ +.|..++.+.+|.+.
T Consensus 478 --------------------------------~n~~vg~vtc~aFSP~sG~l-AvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 --------------------------------SNTKVGHVTCMAFSPNSGYL-AVGNEAGRVHLFKLH 512 (514)
T ss_pred --------------------------------CCCcccceEEEEecCCCceE-EeecCCCceeeEeec
Confidence 01223468999999999999 999999999999873
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=183.85 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=181.4
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++++.||||+|||+|+.|..|.||+..+.+.++.+++|.+.+.+++|... ...
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---------------------------t~~ 258 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---------------------------TSE 258 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC---------------------------ccc
Confidence 78899999999999999999999999999999999999888887777644 566
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++++.|+.|++|++.....+.+++ +|...|.++....-++.+-+|+.|+++++|++. -...-.|.++.+.+-|++|-
T Consensus 259 lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I 336 (479)
T KOG0299|consen 259 LYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI 336 (479)
T ss_pred eeeeecCCceEEEehhHhHHHHHHh-CCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe
Confidence 8999999999999999888875554 899999999988877777777799999999994 33334678888899999998
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEee-cC-----------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFS-GH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h-----------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.+. .+++|+ |.|.+|++.+.+++.+.. .| ..+|++++..|....+++++ ++|.|++|.+..+-.
T Consensus 337 n~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 337 NDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKIEDGLR 414 (479)
T ss_pred ccc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEecCCcc
Confidence 664 566776 999999999888876653 22 22799999999888887776 799999999988732
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
. ...+..+. -..+++.++|. ++|++|++|.
T Consensus 415 ~-i~~l~~ls-~~GfVNsl~f~-----~sgk~ivagi 444 (479)
T KOG0299|consen 415 A-INLLYSLS-LVGFVNSLAFS-----NSGKRIVAGI 444 (479)
T ss_pred c-cceeeecc-cccEEEEEEEc-----cCCCEEEEec
Confidence 2 11233333 34566677776 8899777763
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-21 Score=171.99 Aligned_cols=247 Identities=19% Similarity=0.249 Sum_probs=180.9
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.|.+ +.|+|.++.|+.+++||.+++|++........++ | ..++.+++|..
T Consensus 15 ~IS~--v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~------------------~~plL~c~F~d--------- 64 (323)
T KOG1036|consen 15 GISS--VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-H------------------GAPLLDCAFAD--------- 64 (323)
T ss_pred ceee--EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-c------------------CCceeeeeccC---------
Confidence 4534 4999999999999999999999998775554443 2 23444555543
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
...+++|+.||.|+.+|+.++... ....|..+|+|+.+++....+++||.|++|++||.+...+..++.. ...|.+
T Consensus 65 -~~~~~~G~~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~ 140 (323)
T KOG1036|consen 65 -ESTIVTGGLDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYC 140 (323)
T ss_pred -CceEEEeccCceEEEEEecCCcce--eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEE
Confidence 345899999999999999998874 3346999999999999888899999999999999987666666653 348888
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceeeEe--ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc-----c
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-----Q 235 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~-----~ 235 (630)
+... |..|++|+ ..+.+||+++....... ......++++++-|++.-+++++ -||.|.+=.+..... .
T Consensus 141 ~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 141 MDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred Eecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhce
Confidence 8776 45666654 79999999987643322 23456789999999887777777 599888766655411 1
Q ss_pred cceeeeeecCC---ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
...|....... ...+..+.|+ |-...++||+.||.|.+||+.+.+.++....-
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fh-----p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFH-----PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred eEEeeecccCCceEEEEeceeEec-----cccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 11222222211 2345566666 77789999999999999999988877765443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-22 Score=190.66 Aligned_cols=272 Identities=14% Similarity=0.194 Sum_probs=203.6
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++.+|...+++.||+. |.|+|||+.... ...++..+-. .....-+..+.-.+. ++.|
T Consensus 424 AvtIS~~trhVyTgGk-gcVKVWdis~pg-------~k~PvsqLdc------l~rdnyiRSckL~pd---------grtL 480 (705)
T KOG0639|consen 424 AVTISNPTRHVYTGGK-GCVKVWDISQPG-------NKSPVSQLDC------LNRDNYIRSCKLLPD---------GRTL 480 (705)
T ss_pred EEEecCCcceeEecCC-CeEEEeeccCCC-------CCCccccccc------cCcccceeeeEecCC---------CceE
Confidence 4468888889999986 889999986431 1111111100 000111111122222 7789
Q ss_pred EEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
++|+.-.++.|||+.......... ....-...+++.+||.+..++|..||.|.|||+.+...++.|++|...+.||.++
T Consensus 481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 999998899999998765422221 1222357789999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
++|..|.+|+ ++|+.||++.++.+.... ....|.++.+.|++.+++++= ..+.+.|.......+ +.+..+
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~k------yqlhlh 632 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEK------YQLHLH 632 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCCccc------eeeccc
Confidence 9999999999 899999999988765533 467899999999999998864 788888877766542 244455
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 323 (630)
..++-.+.|. +-|+++++.+.|+.+..|...-|..+...+......+|.+ +.+.+ +|++|+.+...
T Consensus 633 eScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI--S~ddk----yIVTGSGdkkA 698 (705)
T KOG0639|consen 633 ESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI--SFDDK----YIVTGSGDKKA 698 (705)
T ss_pred ccEEEEEEec-----ccCceeeecCchhhhhhccCccccceeeccccCcceeeee--ccCce----EEEecCCCcce
Confidence 6666677776 8899999999999999999999988877777666666665 44444 99999987533
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=191.87 Aligned_cols=329 Identities=15% Similarity=0.168 Sum_probs=224.8
Q ss_pred CCCEEEEeeCCCcEEEEECCCCc-EEE---EecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQ-VQT---EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~-~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
=|.++.++..++.+.||+..+++ ..+ .+....+ ..++.+. .++.. -+.++.
T Consensus 123 fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~-----------------~~Ital~--HP~TY------LNKIvv 177 (910)
T KOG1539|consen 123 FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEG-----------------DFITALL--HPSTY------LNKIVV 177 (910)
T ss_pred ecceEEEEEccCcEEEEEeccccccccccceeeeccC-----------------CceeeEe--cchhh------eeeEEE
Confidence 36778888888899999887741 110 1111000 0122221 11111 456899
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
|+..|.+.+|++++++.+.++. ++...|+++.-+|-=..++.|..+|+|.+++++.++.+.+|+...++|++++|.-||
T Consensus 178 Gs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG 256 (910)
T KOG1539|consen 178 GSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDG 256 (910)
T ss_pred eecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCC
Confidence 9999999999999999998885 688999999999977789999999999999999999999999666899999999998
Q ss_pred CEEEEeC---CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc------------c
Q 006808 172 KMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------------Q 235 (630)
Q Consensus 172 ~~l~~~~---g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~------------~ 235 (630)
..+.+.+ |.+.+||++..+.+.... .|.+.|..+.|-|....+++++ .|+.+++|=..++.- .
T Consensus 257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeeccCCCC
Confidence 7655544 899999999888766554 7889999999999888888877 688888775542210 0
Q ss_pred cceeeeeecCCc--------------------------------------------------------------------
Q 006808 236 SASCVLAMEHPA-------------------------------------------------------------------- 247 (630)
Q Consensus 236 ~~~~~~~~~~~~-------------------------------------------------------------------- 247 (630)
+..|+...+...
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 000100000000
Q ss_pred ---------------------------------eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC---
Q 006808 248 ---------------------------------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--- 291 (630)
Q Consensus 248 ---------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--- 291 (630)
....+++ .++-|++.+.|...|.|-+|++++|-....+.
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~-----vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC-----VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEE-----EeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 0011111 23678999999999999999999986655441
Q ss_pred ceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEE---------------------------------EEcCcc
Q 006808 292 ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV---------------------------------AYGLLL 338 (630)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~---------------------------------~~g~~~ 338 (630)
..+..+... +-++. ...+++++.+|+++.|+-.... .++...
T Consensus 491 ah~~~V~gl---a~D~~--n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 491 AHKGEVTGL---AVDGT--NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred cccCceeEE---EecCC--CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 222222110 11111 1156777777766655432111 111222
Q ss_pred CceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
...+..+.+|.+.++.+.|||||++| ++++.|++||+|++..+
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPTG 608 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEeccCc
Confidence 33444566899999999999999999 99999999999998643
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=190.90 Aligned_cols=290 Identities=19% Similarity=0.217 Sum_probs=200.5
Q ss_pred ccceeEeEECCC---CCEEEEeeCCCcEEEEECCCCcEE------EEecccccccccccccccccccccccceeeEEecc
Q 006808 5 NIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQVQ------TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 5 ~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
|+..+.+.|++. ...||.+..||.|.++|....... ..+. .|. ..+..+.|.+
T Consensus 49 p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-----------------aH~-nAifDl~wap 110 (720)
T KOG0321|consen 49 PVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPL-----------------AHK-NAIFDLKWAP 110 (720)
T ss_pred CCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccc-----------------ccc-ceeEeeccCC
Confidence 444456678773 357889999999999998754432 1222 232 2566777877
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCc---
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS--- 150 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~--- 150 (630)
. ...|+++++|.++++||+.++.+... +..||.+.|.+++|.|... .|++|+.||.|.|||++-..
T Consensus 111 g---------e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 111 G---------ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred C---------ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 3 67799999999999999999887644 3468999999999999554 58899999999999986321
Q ss_pred ------------------------eeEEeecCCCCeEE---EEEccCCCEEEEeC---CeEEEEECCCCceee-------
Q 006808 151 ------------------------LLGKFRASTKGISC---MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ------- 193 (630)
Q Consensus 151 ------------------------~~~~~~~~~~~v~~---l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~------- 193 (630)
.++....+...|.+ +.+..|...||+++ +.|+|||+++.....
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~ 261 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGS 261 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcc
Confidence 12222334444554 55566888999887 799999998764322
Q ss_pred -EeecC---CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEE
Q 006808 194 -KFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (630)
Q Consensus 194 -~~~~h---~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 269 (630)
.+..| ...+.++.....|.+|++.+. |+.|++|++.+.......+ +.......+..-... +|++.+|++
T Consensus 262 ~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~-~sg~~~~sf~vks~l-----Spd~~~l~S 334 (720)
T KOG0321|consen 262 DKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAE-FSGKLNSSFYVKSEL-----SPDDCSLLS 334 (720)
T ss_pred cCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhh-ccCcccceeeeeeec-----CCCCceEec
Confidence 22333 235677777788899999985 9999999998865431111 111111222222223 399999999
Q ss_pred EecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccC
Q 006808 270 ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS 349 (630)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~ 349 (630)
|+.|...++|.+.+.+. .+ . -+.+|.
T Consensus 335 gSsd~~ayiw~vs~~e~-----------------~~-------~------------------------------~l~Ght 360 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEA-----------------PP-------A------------------------------LLLGHT 360 (720)
T ss_pred cCCCcceeeeeecCccC-----------------Ch-------h------------------------------hhhCcc
Confidence 99999999998854432 00 0 123677
Q ss_pred CCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 350 GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 350 ~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.+|.+++|.|....=.+++|.|-.+++|++.++
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 788888888764432277899999999998654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-19 Score=172.91 Aligned_cols=346 Identities=12% Similarity=0.085 Sum_probs=233.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEeccccccccccccccc--ccccccccceeeEEecccccccccc---
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR--LEREHLSVDYTCMKWLSVDRKKKRK--- 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~w~~~~~~~~~~--- 83 (630)
+|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.+.+++...+ +..| +.+-..+.|...-.+.+..
T Consensus 250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSG--gKDRki~~Wd~~y~k~r~~elP 326 (626)
T KOG2106|consen 250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSG--GKDRKIILWDDNYRKLRETELP 326 (626)
T ss_pred EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeec--CccceEEeccccccccccccCc
Confidence 7889999996 568999999999999888777776688888877665443 1111 2233445665221111000
Q ss_pred ----------cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 84 ----------LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 84 ----------~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
.+..-|++|+....|.-=.+.++..+.. .+|......++.+|+.+.+++++.|+.+++|+ ..+++.
T Consensus 327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w 402 (626)
T KOG2106|consen 327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW 402 (626)
T ss_pred hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence 0222266677666666666665554422 37888999999999999999999999999999 455554
Q ss_pred EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+.. -..++.|+.|+|.| .++.|. |...+.|.++...+..-.. ..++++++|+|+|.+|++++ .|+.|++|.+..
T Consensus 403 t~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 403 TKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVSA 478 (626)
T ss_pred EEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEec-CCCeEEEEEECC
Confidence 433 45688999999999 888887 9999999998665554444 88999999999999999988 799999999977
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee-ccC---CC-ccc
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-SED---VN-SKS 306 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~---~~-~~~ 306 (630)
.... ......+....+..+.|+ +|++++.+-+.|-.|.+|....-.++...+..++... |.. ++ ..+
T Consensus 479 ~g~~---y~r~~k~~gs~ithLDwS-----~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 479 NGRK---YSRVGKCSGSPITHLDWS-----SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred CCcE---EEEeeeecCceeEEeeec-----CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 6533 222222334677777787 9999999999999999995333333333232222110 100 00 111
Q ss_pred ccc-------h-hhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 307 QKS-------A-TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 307 ~~~-------~-~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+.. . ...+++|-..|.+++ +..-.......+..+.+|++.|.+++|+.+...| ++.+.|.++..|.
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~l-----f~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~l-i~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHL-----FSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHL-ISTGKDTSIMQWR 624 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEE-----EccccCCCcccceeeccccceeEEEEEeeCCceE-EecCCCceEEEEE
Confidence 110 0 112222222232222 1122344566778888999999999999888777 5555899999997
Q ss_pred e
Q 006808 379 V 379 (630)
Q Consensus 379 ~ 379 (630)
+
T Consensus 625 l 625 (626)
T KOG2106|consen 625 L 625 (626)
T ss_pred e
Confidence 6
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=191.16 Aligned_cols=223 Identities=15% Similarity=0.231 Sum_probs=180.4
Q ss_pred eEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++|.+ ++-.+++|+.|.+|.+|...+......+++|.+.+.+ +.-.. ...+
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~------------------ls~~~----------~~~~ 115 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS------------------LSIGE----------DGTL 115 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee------------------eecCC----------cCce
Confidence 35554 4456899999999999999999999999977765443 22211 2238
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
++|+.|.++++|-...-.. . ..+|+..|+++++-|++ .++|||.|.+|++|.- ++.+++|.+|...|+.+++-|
T Consensus 116 iSgSWD~TakvW~~~~l~~--~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 116 ISGSWDSTAKVWRIGELVY--S-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred EecccccceEEecchhhhc--c-cCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence 9999999999997654332 3 46899999999999987 8999999999999984 889999999999999999999
Q ss_pred CCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce
Q 006808 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV 248 (630)
Q Consensus 170 ~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (630)
++.++-++. |.|++|++ +|.++.++.+|+..|.++...+++..++++| +|++++||+... |...+.++..
T Consensus 190 ~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~e-------~~q~I~lPtt 260 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKDE-------CVQVITLPTT 260 (745)
T ss_pred CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecCc-------eEEEEecCcc
Confidence 877666655 99999998 8889999999999999999888888888888 799999999772 5667777774
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.+.++.+- ++|. |++|+.||.|+||...
T Consensus 261 siWsa~~L-----~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 261 SIWSAKVL-----LNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ceEEEEEe-----eCCC-EEEeccCceEEEEEec
Confidence 44444332 4544 7889999999999865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-22 Score=185.47 Aligned_cols=265 Identities=10% Similarity=0.035 Sum_probs=198.0
Q ss_pred EeEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
|++=+|.. ..+|+|+.||.|+|||+.+..+..+|..|.+.+..+++.. ..
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-----------------------------~~ 121 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-----------------------------TS 121 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-----------------------------cc
Confidence 34777766 6899999999999999999999999999988777655542 34
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++++.|.+|+.|.+... ...++. -.+.+.++.-+..+..|+|||.+ |.|||.....+++.+.-....|.++.|+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred eEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecC
Confidence 789999999999998763 333332 23567777777777889999875 8999999999999988777789999999
Q ss_pred cCCC-EEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 169 SDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 169 p~~~-~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
|... +|++++ +.|.+||++++.+++.+. -...-+.|+|+|.+-.| +++.+|..++.||++..... ......
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF-~~a~ED~nlY~~DmR~l~~p----~~v~~d 270 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNF-VAANEDHNLYTYDMRNLSRP----LNVHKD 270 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccce-eeccccccceehhhhhhccc----chhhcc
Confidence 9655 555553 899999999999887764 23445789999955444 44558999999999886643 222233
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc----eeEEeeccCCCcccccchhhhhhhccccc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA----TKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
+...+..+.|+ |.|.-+++||.|.+|+||....+........ ...++. ++.+.+ +|++|+.|+
T Consensus 271 hvsAV~dVdfs-----ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk----~S~Dsk----yi~SGSdd~ 337 (433)
T KOG0268|consen 271 HVSAVMDVDFS-----PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK----YSMDSK----YIISGSDDG 337 (433)
T ss_pred cceeEEEeccC-----CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE----Eecccc----EEEecCCCc
Confidence 33444445565 9999999999999999999877654322211 222332 566777 999999998
Q ss_pred cccCCc
Q 006808 322 IVKPAS 327 (630)
Q Consensus 322 ~~~~~~ 327 (630)
.+++|.
T Consensus 338 nvRlWk 343 (433)
T KOG0268|consen 338 NVRLWK 343 (433)
T ss_pred ceeeee
Confidence 666543
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=187.64 Aligned_cols=230 Identities=16% Similarity=0.253 Sum_probs=180.4
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEE--EEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+|...|||+.|++|+.-.++.|||+...... .++.........+..+|+ .+
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD---------------------------ak 522 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---------------------------AK 522 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---------------------------cc
Confidence 4589999999999999999999999865432 222211111111222222 67
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
+.++|+.||.|.|||+.+...+..+ .||+..+.||.++++|..|++|+-|.+|+.||++.++.+.... ....|.++..
T Consensus 523 vcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~ 600 (705)
T KOG0639|consen 523 VCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY 600 (705)
T ss_pred eeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence 7899999999999999988888555 5899999999999999999999999999999999998766543 4568999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
+|++.+|++|. +.+.+...... ....+.-|..-|.++.|.+-|++++++| .|+.+..|...-+. .++....
T Consensus 601 cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGa-----siFqskE 673 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGA-----SIFQSKE 673 (705)
T ss_pred CCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC-chhhhhhccCcccc-----ceeeccc
Confidence 99999999998 67777765433 3445667899999999999999999999 69999999988776 3455444
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
...+..| .++ .|.++|++|+.|....||.+
T Consensus 674 ~SsVlsC-DIS-----~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSC-DIS-----FDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceee-eec-----cCceEEEecCCCcceEEEEE
Confidence 4444443 343 68899999999999888865
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-21 Score=176.37 Aligned_cols=203 Identities=16% Similarity=0.263 Sum_probs=152.0
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccc----cccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIAST----ETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+..+.|+-+..|.|.||++... +..+...... .....|... +|. ...-.+.|.|.. ...+++
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~s~~~Pl~t~~---ghk-~EGy~LdWSp~~--------~g~Lls 229 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKDSEFRPLFTFN---GHK-GEGYGLDWSPIK--------TGRLLS 229 (440)
T ss_pred CcceeeeecccCcEEEEEchhh--hhhhcCccccccccccCceEEec---ccC-ccceeeeccccc--------cccccc
Confidence 5567777788999999998532 2222222111 122223322 555 345578888854 455788
Q ss_pred EeCCCeEEEEEccCCeee--EEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCC---ceeEEeecCCCCeEEE
Q 006808 92 GTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGISCM 165 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~l 165 (630)
|...+.|++|.+.+|.-. ...+.+|+..|-.++|||. ...|++||-||+|+|||++.+ .++. .+.|.+.|+.|
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVI 308 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVI 308 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeE
Confidence 888889999999987643 2334579999999999994 456999999999999999988 3443 37899999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCC---CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSD---HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~---~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.|+..-.+||+|+ |+++|||+++ ++++.+|+.|..+|++|.|+|.....+.+++.|..|.+||+....
T Consensus 309 SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 309 SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999888999998 9999999986 467889999999999999999655444444479999999986543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=178.75 Aligned_cols=315 Identities=15% Similarity=0.171 Sum_probs=224.0
Q ss_pred cccceeEeEECC--CCCEEEEe--eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 4 SNIRDILTSFSP--ALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 4 ~~V~~~~~~fs~--dg~~las~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
..| .|++||+ .|.+|+.. +.+..+.|||+..+......+... ..+....|.|.++.
T Consensus 155 ~GV--~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn------------------e~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 155 RGV--TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN------------------EVVFLATFHPTDPN 214 (626)
T ss_pred ccc--eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc------------------ceEEEEEeccCCCc
Confidence 346 5669998 35666655 346779999999877665544322 23445566666532
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEc---cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~---~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+++..+.|.+.+|+++.+....+. .......|.|++|.++|. +++|..+|.|.||+..+.+..+...
T Consensus 215 ---------liit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~ 284 (626)
T KOG2106|consen 215 ---------LIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH 284 (626)
T ss_pred ---------EEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee
Confidence 566667788999999988664332 222336799999999886 7899999999999998888877777
Q ss_pred cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-----------ee-----------------------------eE
Q 006808 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------KM-----------------------------QK 194 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-----------~~-----------------------------~~ 194 (630)
.|.+.|.+++...+|.+|- |+ +.|..||-.-.+ .+ ..
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 9999999999999997766 66 789999832100 00 11
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
..+|......++.+|+...+++++ .|+.+++|+ ..+.. ....+..+ ..++.|. |.| .++.|+..|
T Consensus 364 v~gh~delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~~---wt~~~~d~---~~~~~fh-----psg-~va~Gt~~G 428 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKLE---WTKIIEDP---AECADFH-----PSG-VVAVGTATG 428 (626)
T ss_pred EEecccceeeEEcCCChhheeecc-CcceEEEcc--CCcee---EEEEecCc---eeEeecc-----Ccc-eEEEeeccc
Confidence 236777788899999999999998 799999999 22221 22223222 3455665 888 999999999
Q ss_pred cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEE
Q 006808 275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDIN 354 (630)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~ 354 (630)
...+.|..+...+..+.. ...+++. .|+|++. .++.|+.|+++++|. ....| .....+....+ .++..
T Consensus 429 ~w~V~d~e~~~lv~~~~d-~~~ls~v-~ysp~G~----~lAvgs~d~~iyiy~---Vs~~g-~~y~r~~k~~g--s~ith 496 (626)
T KOG2106|consen 429 RWFVLDTETQDLVTIHTD-NEQLSVV-RYSPDGA----FLAVGSHDNHIYIYR---VSANG-RKYSRVGKCSG--SPITH 496 (626)
T ss_pred eEEEEecccceeEEEEec-CCceEEE-EEcCCCC----EEEEecCCCeEEEEE---ECCCC-cEEEEeeeecC--ceeEE
Confidence 999999998766554443 2222222 2899998 999999999888753 11111 11222223333 78999
Q ss_pred EeecCCcceeeccccceeccccc
Q 006808 355 LNCSQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 355 ~~~s~dg~~l~~s~s~d~~~~~w 377 (630)
+.||+|+++| .+.|.|--+-.|
T Consensus 497 LDwS~Ds~~~-~~~S~d~eiLyW 518 (626)
T KOG2106|consen 497 LDWSSDSQFL-VSNSGDYEILYW 518 (626)
T ss_pred eeecCCCceE-EeccCceEEEEE
Confidence 9999999999 999999999999
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=185.81 Aligned_cols=341 Identities=13% Similarity=0.099 Sum_probs=219.4
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
.++.|+|.+..|+++|.|.++.||.-.+. --....+-.. .++.....-...|++. +
T Consensus 271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe-------------~gg~a~GF~g~lw~~n---------~ 328 (764)
T KOG1063|consen 271 YSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE-------------VGGSAGGFWGGLWSPN---------S 328 (764)
T ss_pred EEEEEccchhhheecccCcceEEEecCCccceEEEEEEeec-------------ccccccceeeEEEcCC---------C
Confidence 45599999999999999999999976543 3222222100 0111222334455554 6
Q ss_pred cEEEEEeCCCeEEEEEccCC-e-eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---------------
Q 006808 87 SLLVLGTGGGDVLALAVSAG-Q-LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--------------- 149 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~-~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~--------------- 149 (630)
+.+++-+..|..++|..... . .......||...|++++|+|.|.+|+++|.|.+-++|---..
T Consensus 329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 67888888999999983322 1 122344689999999999999999999999998888743200
Q ss_pred --------------------ceeEEee-----------------------------------------------------
Q 006808 150 --------------------SLLGKFR----------------------------------------------------- 156 (630)
Q Consensus 150 --------------------~~~~~~~----------------------------------------------------- 156 (630)
+.++.|.
T Consensus 409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 0011111
Q ss_pred ----------------------------------cCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeEe
Q 006808 157 ----------------------------------ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKF 195 (630)
Q Consensus 157 ----------------------------------~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~~ 195 (630)
+|...|++++.+|+|+++|+++ ..|++|+..+...+..+
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L 568 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL 568 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence 5667899999999999999987 37999999999888899
Q ss_pred ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 196 ~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
.+|.-.|+.++|||||+||++.+ .|+++.+|.............. ...+..++-.+.|+ |++.+++|+|.|..
T Consensus 569 ~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~fa~-~k~HtRIIWdcsW~-----pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFRFAC-LKAHTRIIWDCSWS-----PDEKYFATASRDKK 641 (764)
T ss_pred cccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhhhcc-ccccceEEEEcccC-----cccceeEEecCCce
Confidence 99999999999999999999998 7999999998654433111111 23344444444454 99999999999999
Q ss_pred EEEEEcCCc--ccccccC--ceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCcc----CceeeEEec
Q 006808 276 CYIWYGQNI--EELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL----KPSFQKILV 347 (630)
Q Consensus 276 i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~----~~~~~~~~~ 347 (630)
|.||..... +.+.... +...+++...............++.|-..|-+.++.-....--+... ........+
T Consensus 642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG 721 (764)
T ss_pred EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence 999998776 3333211 11111111110111111111133444444544333211000000100 111122235
Q ss_pred cCCCcEEEeecCC----------cceeeccccceecccccee
Q 006808 348 NSGEDINLNCSQD----------GVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 348 h~~~v~~~~~s~d----------g~~l~~s~s~d~~~~~w~~ 379 (630)
|.+.|..+.|+|- ...| ++|+.|.++|+.++
T Consensus 722 ~~~aV~rl~w~p~~~~~~~~~~~~l~l-a~~g~D~~vri~nv 762 (764)
T KOG1063|consen 722 PDSAVNRLLWRPTCSDDWVEDKEWLNL-AVGGDDESVRIFNV 762 (764)
T ss_pred hHHhhheeEeccccccccccccceeEE-eeecccceeEEeec
Confidence 8888999999975 2345 88888999998776
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-21 Score=181.26 Aligned_cols=245 Identities=12% Similarity=0.124 Sum_probs=179.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEE---------ccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCc-----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWR---------LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS----- 150 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~---------~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~----- 150 (630)
..+|++++..+.|.|||..+-..... .+.+|...-++++|++.. .++++++.|++|++||+....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 66888889999999999865322211 235788878899999843 469999999999999987432
Q ss_pred --eeEEeecCCCCeEEEEEccC-CCEEEEeC--CeEEEEECC--CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe
Q 006808 151 --LLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY 223 (630)
Q Consensus 151 --~~~~~~~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~ 223 (630)
+...+.+|...|..++|+|- ...+++++ +.+.|||++ +.++.....+|.++|.+++|+|-+.+++++++.|++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 34568899999999999994 44556665 899999999 455666778999999999999988777777767999
Q ss_pred EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC-CCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCC
Q 006808 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (630)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (630)
|.+||++..+.. ...+..+...+..+-|+ |+ ...|++++.|+++.|||+..-..-+.
T Consensus 297 V~LwDlRnL~~~----lh~~e~H~dev~~V~WS-----Ph~etvLASSg~D~rl~vWDls~ig~eq~------------- 354 (422)
T KOG0264|consen 297 VALWDLRNLNKP----LHTFEGHEDEVFQVEWS-----PHNETVLASSGTDRRLNVWDLSRIGEEQS------------- 354 (422)
T ss_pred EEEeechhcccC----ceeccCCCcceEEEEeC-----CCCCceeEecccCCcEEEEeccccccccC-------------
Confidence 999999997653 44444444444444444 54 56788889999999999854322111
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+... .+| ...+++.. .||.+.|..+.|.|+.....+|.+.|+.+.+|...
T Consensus 355 --~eda----------~dg-----ppEllF~H-----------gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 --PEDA----------EDG-----PPELLFIH-----------GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred --hhhh----------ccC-----CcceeEEe-----------cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000 011 00111111 28999999999999998876899999999999874
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-22 Score=200.26 Aligned_cols=224 Identities=15% Similarity=0.248 Sum_probs=191.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
..-..++.+++|+.|..+-+|.+.....+..+.+|.+.+.++.|... ..+|+.
T Consensus 35 k~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~---------------------------E~Llaa 87 (825)
T KOG0267|consen 35 KIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS---------------------------ERLLAA 87 (825)
T ss_pred eeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc---------------------------hhhhcc
Confidence 34456788999999999999998877777778888888777777665 778999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
|+.+|+|++||+..++.+.++ .+|...+.++.|+|-|.++++|+.|+.+++||++...|.+.+.+|...|.++.|+|+|
T Consensus 88 gsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred cccCCceeeeehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 999999999999999888655 5899999999999999999999999999999999899999999999999999999999
Q ss_pred CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCcee
Q 006808 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (630)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (630)
++++.++ .++++||+..|+.+..|.+|.+.+..+.|+|..-.++.++ .|+++++||+++-... -.......-
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I-----~s~~~~~~~ 240 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVI-----SSGKPETDG 240 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccceeEEe-----eccCCccCC
Confidence 9999998 7999999999999999999999999999999876666666 6999999999976532 222333445
Q ss_pred eeeEEecCCccCCCCCEEEEEecCC
Q 006808 250 MDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
+.+..|+ |++..+++|....
T Consensus 241 v~~~~fn-----~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 241 VRSLAFN-----PDGKIVLSGEQIS 260 (825)
T ss_pred ceeeeec-----CCceeeecCchhh
Confidence 6667776 8998888886653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=179.65 Aligned_cols=198 Identities=22% Similarity=0.267 Sum_probs=163.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC---------CCceeEEee
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------TGSLLGKFR 156 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~---------~~~~~~~~~ 156 (630)
+.+++.|+..|.|++|.+.+|..+..+ .+|-..|+|+.|+.||.+|++||.||.|.+|.+. +-++++.|.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS 171 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence 788888889999999999999988555 6899999999999999999999999999999763 346788899
Q ss_pred cCCCCeEEEEEccCC--CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 157 ASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.|.-+|+.+...+.| ..|++++ .++++||+..+..+.++. ....+.+++..|-++.+++|+ .+|.|.+.++...
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKL 249 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcC
Confidence 999999999988753 5788887 899999999999888876 567899999999999999888 6999998887654
Q ss_pred ccccc-----------eeeee-ecCCc-eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 233 KKQSA-----------SCVLA-MEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 233 ~~~~~-----------~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..+.. ..... .+|.. ..++|+..+ -||..|++|+.||.++|||+.+.+.+++..
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 31100 01111 22333 478888887 899999999999999999999888877654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-20 Score=167.09 Aligned_cols=255 Identities=17% Similarity=0.149 Sum_probs=181.3
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI 144 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iw 144 (630)
..+.+++|.|.. ..++++++.||+|++|+++. |..+.+....|.++|.+++|+.+|..+++|+.|+.+++|
T Consensus 28 DsIS~l~FSP~~--------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 28 DSISALAFSPQA--------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred cchheeEecccc--------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 355666766632 67788999999999999987 566556666899999999999999999999999999999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccCCC--EEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSDGK--MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
|+.+++ ...+..|.++|.++.|-+... .|++|+ .+|+.||.+...++.++. -...+.++..- ...++++. .
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVat-a 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVAT-A 174 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEe-c
Confidence 999995 556788999999999988655 789998 899999999988888776 34556655442 33455555 5
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeee-EEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeec
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (630)
++.|.+|+++.+...-...... -...+++ .+| ++....+.|+-.|++.|..+..+.+... ....|
T Consensus 175 ~r~i~vynL~n~~te~k~~~Sp---Lk~Q~R~va~f------~d~~~~alGsiEGrv~iq~id~~~~~~n-----FtFkC 240 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESP---LKWQTRCVACF------QDKDGFALGSIEGRVAIQYIDDPNPKDN-----FTFKC 240 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCc---ccceeeEEEEE------ecCCceEeeeecceEEEEecCCCCccCc-----eeEEE
Confidence 9999999998765331111111 1223333 344 5666669999999999998877654111 11111
Q ss_pred cCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.. ... . .++ .+| .|.+++|+|.-..| +|.+.||+..+|+-
T Consensus 241 HR----~~~----~-----~~~----------~VY----------------aVNsi~FhP~hgtl-vTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 241 HR----STN----S-----VND----------DVY----------------AVNSIAFHPVHGTL-VTAGSDGTFSFWDK 280 (347)
T ss_pred ec----cCC----C-----CCC----------ceE----------------EecceEeecccceE-EEecCCceEEEecc
Confidence 10 000 0 000 112 68899999988888 78878999999997
Q ss_pred ccceeeccc
Q 006808 380 QNRVTALDR 388 (630)
Q Consensus 380 ~~~~~~~~~ 388 (630)
.. .+.|..
T Consensus 281 da-r~kLk~ 288 (347)
T KOG0647|consen 281 DA-RTKLKT 288 (347)
T ss_pred hh-hhhhhc
Confidence 53 344433
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=186.78 Aligned_cols=334 Identities=13% Similarity=0.116 Sum_probs=235.2
Q ss_pred eeEeEECC-CCC-EEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 8 DILTSFSP-ALD-YFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 8 ~~~~~fs~-dg~-~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|+++.| .+. ++|.|+.+..|.++.-.+. ..+.++.+|...+.++.|... ++
T Consensus 148 pLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~---~~-------------------- 204 (764)
T KOG1063|consen 148 PLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL---GG-------------------- 204 (764)
T ss_pred hHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc---CC--------------------
Confidence 35667777 344 4556667888888865533 457788888888888777655 22
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCe------------------------eeE------EccCCCCCCEEEEEEecCCCEEE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQ------------------------LKW------RLSDCHPGGVSAISFATHGSCIY 133 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~------------------------~~~------~~~~~h~~~v~~~~~s~~g~~l~ 133 (630)
+.-++++++.|..|+||.+.-+. .+. .+..||...|.++.|+|.+..|+
T Consensus 205 -~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL 283 (764)
T KOG1063|consen 205 -DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL 283 (764)
T ss_pred -CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence 14578889999999999875332 011 22358999999999999998999
Q ss_pred EEeCCCcEEEEeCCCCc-------eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC---ceeeEeecCCCC
Q 006808 134 SAGADGMVCEIDPLTGS-------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA 201 (630)
Q Consensus 134 s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~ 201 (630)
+++.|.++.+|...+.. .+....+........-|+|++..+++-+ |..++|-.... .......||...
T Consensus 284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 99999999999765432 1122233344688999999998888877 89999983332 233345799999
Q ss_pred eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce-------------eeeee-------------------------
Q 006808 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-------------CVLAM------------------------- 243 (630)
Q Consensus 202 v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~-------------~~~~~------------------------- 243 (630)
|+.+.|+|.|.||+++| .|.+-|+|-.-..+ .... |+..+
T Consensus 364 V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q-~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv 441 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQ-QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV 441 (764)
T ss_pred ceeeeecCCCCEEEEec-cccceeeecccccc-cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence 99999999999999998 58887876543110 0000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 006808 244 -------------------------------------------------------------------------------- 243 (630)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (630)
T Consensus 442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL 521 (764)
T KOG1063|consen 442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL 521 (764)
T ss_pred HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
..++..+.+++ .+|+|+++|+++... .|++|+..+-.+.+..+.+...+.. ..|+|+++ ++++++
T Consensus 522 YGHGyEv~~l~-----~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~-l~FSpdg~----~LLsvs 591 (764)
T KOG1063|consen 522 YGHGYEVYALA-----ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR-LAFSPDGR----YLLSVS 591 (764)
T ss_pred ccCceeEEEEE-----ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE-EEECCCCc----EEEEee
Confidence 00011122222 348999999998744 6899999888776655555444443 23999999 999999
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.|.+..+|..+--+ .....|...+.|+.-|+.+.|+||+.++ +|+|.|+++++|...+.
T Consensus 592 RDRt~sl~~~~~~~----~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDI----KDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWEEPDL 650 (764)
T ss_pred cCceEEeeeeeccc----chhhhhccccccceEEEEcccCccccee-EEecCCceEEEEeccCc
Confidence 99887776543222 2222366788999999999999999998 99999999999988643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=189.32 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=195.0
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.+|++ +.||+|++||+|..-|+++||++..-+....+..|...+.++.|+.+ .-
T Consensus 461 G~R~~--~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p------------------~~------ 514 (1080)
T KOG1408|consen 461 GFRAL--AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP------------------VL------ 514 (1080)
T ss_pred ceEEE--EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc------------------hh------
Confidence 46555 99999999999999999999999998888888877776666655543 21
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC--CEEEEEeCCCcEEEEeCCCCceeEEee-----c
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFR-----A 157 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~ 157 (630)
...+|++++.|.-|.|||+..+-.+...+.+|++.|+++.|...| ..+++++.|+.|.+--.+....-..|. .
T Consensus 515 ~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~ 594 (1080)
T KOG1408|consen 515 TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL 594 (1080)
T ss_pred hhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc
Confidence 156789999999999999988776666677999999999998876 568999999877543322111111122 1
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec---CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
....++.+++.|..+++++++ ..|+||++.+|+..+.|++ |.+....+...|.|.|++++++ |+++.++|+.++
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~~Df~sg 673 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCFVDFVSG 673 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEEEEeccc
Confidence 234789999999999999998 8999999999999999964 5677788899999999999985 999999999998
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+ |+..+..+...++.+.|. +|-++|++.+.||.|.||.+..
T Consensus 674 E-----cvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 E-----CVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred h-----hhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECch
Confidence 8 555555666677777777 8999999999999999999754
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=175.29 Aligned_cols=252 Identities=18% Similarity=0.214 Sum_probs=175.4
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEE---EEecccccccc----cccccccccccccccceeeEEecccccccccccCCcE
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTET----TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~----~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.|+|+|.|..|..|.|||+.-...+ ..+....+... ...++ ..+|+. .+..+.|+..- .+.
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~---~~gHTd-avl~Ls~n~~~--------~nV 258 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNS---ASGHTD-AVLALSWNRNF--------RNV 258 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccc---cccchH-HHHHHHhcccc--------cee
Confidence 3689999999999999998532111 11110000000 00000 113432 33455665443 678
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCcee-EEeecCCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLL-GKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~v~~l~ 166 (630)
|++|+.|.+|.+||+.++++...+. .|...|.++.|+| ....|++|+.|++|.+.|++...+. ..++ ..+.|-.++
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~ 336 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVA 336 (463)
T ss_pred EEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEE
Confidence 9999999999999999999986664 6999999999999 4567999999999999999853332 2334 456899999
Q ss_pred EccCCCEEEEeC---CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeee
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 242 (630)
|.|.....+.++ |+++-+|+++. +++.+++.|.++|.++++++.-..++++++.|+.+++|++...... .+..
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---~v~~ 413 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK---SVKE 413 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc---cccc
Confidence 999765544444 99999999985 8999999999999999999887777777778999999999776532 1111
Q ss_pred ecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccccc
Q 006808 243 MEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
....-....|..+. |+- .+++.|+..+.++|||+.+...++.
T Consensus 414 ~~~~~~rl~c~~~~-----~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 414 HSFKLGRLHCFALD-----PDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred ccccccceeecccC-----CCcceEEEecCccceEEEeecccChhHHH
Confidence 11111113333333 443 5677788888999999987765543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=179.16 Aligned_cols=240 Identities=13% Similarity=0.133 Sum_probs=187.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.|..+ +|++ |..|.+.+.+|.|.-||+.+++....+....+.+.+++.+|.
T Consensus 70 rsIE~L--~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~------------------------- 121 (691)
T KOG2048|consen 70 RSIESL--AWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE------------------------- 121 (691)
T ss_pred CceeeE--EEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-------------------------
Confidence 456455 8885 456777778899999999999999998877777776666655
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeE-EccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-----c
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----A 157 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~ 157 (630)
+..+++|+.+|.+..++...++... +.+....+.|.+++|+|++..+++|+.||.|++||..+++.+.... .
T Consensus 122 --~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 122 --NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred --cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 7789999999988888888887643 3334456899999999999999999999999999999988766221 1
Q ss_pred ---CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 158 ---STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 158 ---~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
...-|.++.|-.++ .|++|. |+|.+||...+..++.+..|...|.+++.++++.+++++| -|+.|..|...+.
T Consensus 200 ~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 200 SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence 22256777777665 667776 9999999999999999999999999999999999999998 5999988888776
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+.. +.......++...+.+++.. + ..+++|+.|+.+.+-....
T Consensus 278 ~~~-wv~~~~r~~h~hdvrs~av~-----~--~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 278 KSE-WVINSRRDLHAHDVRSMAVI-----E--NALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccc-eeeeccccCCcccceeeeee-----c--ceEEecceeeEEEEccccc
Confidence 542 22333344555556666554 3 4899999999988866544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-20 Score=166.92 Aligned_cols=261 Identities=18% Similarity=0.247 Sum_probs=179.9
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecc----cccccccccCC
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS----VDRKKKRKLGS 86 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~----~~~~~~~~~~~ 86 (630)
+.|||||.-|++-+.|..+++|++-.--.-....+. .......+-. -..+..+-...|.+ .+|. .
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~--~~~~~~~~~r---~~eg~tvydy~wYs~M~s~qP~------t 123 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP--LNFSKHLSYR---YQEGETVYDYCWYSRMKSDQPS------T 123 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCc--cccccceeEE---eccCCEEEEEEeeeccccCCCc------c
Confidence 489999999999999999999998532111100000 0000000000 01122344455642 2333 7
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccC-CCCC---CEEEEEEecCCCEEEEEeCCCcEEEEeC-CCCceeEE---ee--
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPG---GVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK---FR-- 156 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~-~h~~---~v~~~~~s~~g~~l~s~~~dg~v~iwd~-~~~~~~~~---~~-- 156 (630)
+++++.+.+.-|++||.-+|+....+.. .|.. ...+++|+|||..|++| ...+|++||+ +.|+-... +.
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence 7888888888899999999987654421 1322 45789999999999887 5678999998 55542211 11
Q ss_pred --cCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 157 --ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 157 --~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+..+-+.|++|+|. .+.+++++ .++-||.-..+.++..+.+|.+.|+.+.|.++|+.|++++..|..|-.||++.
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 23567899999994 55888888 67888887788899999999999999999999999999998888999999998
Q ss_pred Cccccceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC-ccccccc
Q 006808 232 VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNT 290 (630)
Q Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~ 290 (630)
.+.. +..+. |......-+.|. ..|.+.+|++|+.||.|++||++. |+.....
T Consensus 283 ~~~p----v~~L~rhv~~TNQRI~FD---ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 283 SRDP----VYALERHVGDTNQRILFD---LDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred ccch----hhhhhhhccCccceEEEe---cCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 7644 22222 222122223332 238999999999999999999987 5544333
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-19 Score=174.98 Aligned_cols=240 Identities=12% Similarity=0.100 Sum_probs=171.6
Q ss_pred EeEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+++|+|+|+.+ ++++.++.|++||..+++....+..+. ....+.|.+. ++.
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------------------~~~~~~~~~~---------g~~ 86 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-------------------DPELFALHPN---------GKI 86 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-------------------CccEEEECCC---------CCE
Confidence 45999999876 566778999999999988776554221 1223455543 444
Q ss_pred EEE-EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 89 LVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~-~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
+++ +..++.|.+||+.+++.+..+. +...+.+++|+|+|.++++++.++ .+..||..+++....+.. ...+.+++
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~ 163 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAE 163 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEE
Confidence 544 4567899999999887765553 234578899999999999888765 567789988877665543 33457899
Q ss_pred EccCCCEEEEeC---CeEEEEECCCCceeeEeecCC-----C--CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP-----G--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~-----~--~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
|+|+++++++++ +.|++||+.+++.+..+..+. . ....++|+|++++++++...++.+.+||+.+.+..
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~- 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL- 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-
Confidence 999999886553 799999999998776664321 1 23468899999986665435778999999876533
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccC
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~ 291 (630)
.... +.. .+..+.|+ |+|.+|++++ .+|.|.+||+.+++.+...+
T Consensus 243 --~~~~--~~~-~~~~~~~~-----~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 243 --DYLL--VGQ-RVWQLAFT-----PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred --EEEE--eCC-CcceEEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 1111 122 34455666 9999998864 58999999999988766553
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-22 Score=197.57 Aligned_cols=210 Identities=15% Similarity=0.195 Sum_probs=174.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
...++.|+.+..+-+|.+..-..+..+ .+|.++|.++.|++...+|++|+.+|+|++||+..++.++++.+|...+.++
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV 118 (825)
T ss_pred ceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence 567888888888999998877666553 5899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.|+|-+.+.+.|+ +.+++||++...+...+.+|...+..+.|+|+|++++.++ +|..++|||+..++.. ..+
T Consensus 119 ~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~-----~ef 192 (825)
T KOG0267|consen 119 DFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLS-----KEF 192 (825)
T ss_pred eeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccccccc-----ccc
Confidence 9999999998887 8999999998889999999999999999999999999998 6899999999888743 233
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
..+...+..+-|. |..-.+++|+.|+.+++||+++.+.+...++....+.+.. |.++++
T Consensus 193 ~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~ 251 (825)
T KOG0267|consen 193 KSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGK 251 (825)
T ss_pred ccccccccccccC-----chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCce
Confidence 3222223333354 7888899999999999999999888776665533333322 566655
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=163.22 Aligned_cols=240 Identities=14% Similarity=0.258 Sum_probs=169.1
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCC----CcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
++.|.+.|+.+|+|+.|++|+|||... ..+...++.|.+++.. +.|.++.-
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~r------------------V~WAhPEf------- 72 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWR------------------VVWAHPEF------- 72 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEE------------------EEecCccc-------
Confidence 459999999999999999999999543 3456667766665554 44544432
Q ss_pred CcEEEEEeCCCeEEEEEccCC-------e-eeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCC------
Q 006808 86 SSLLVLGTGGGDVLALAVSAG-------Q-LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG------ 149 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~-------~-~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~------ 149 (630)
|+.+++|+.|+++.||.-... + ...+.+....+.|+++.|.| -|-.+++++.||.++||+....
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 889999999999999976321 1 11223345678899999999 4667999999999999986533
Q ss_pred ceeEEee-------cCCCCeEEEEEccC---CCEEEEeC-------CeEEEEECCCC----ceeeEeecCCCCeEEEEEe
Q 006808 150 SLLGKFR-------ASTKGISCMAVSSD---GKMLATAA-------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFS 208 (630)
Q Consensus 150 ~~~~~~~-------~~~~~v~~l~~~p~---~~~l~~~~-------g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~s 208 (630)
.....++ .+..+..|+.|+|. ..+||+|+ +.++||....+ ..+.++.+|+.+|+.++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 2222233 34457789999983 46888887 37888866543 3466788999999999999
Q ss_pred eCC----cEEEEEeeCCCeEEEEEcCCCc------------c---ccceeeeee-cCCceeeeeEEecCCccCCCCCEEE
Q 006808 209 DNG----KYVLSSAVGERYIALWRTDGVK------------K---QSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 209 p~~----~~l~~~~~~d~~i~vwd~~~~~------------~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
|+- ..|++++ .|| |+||.+.... . .....+..+ .|...+..+.+ + -.|..|+
T Consensus 233 Pn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w-N-----mtGtiLs 304 (361)
T KOG2445|consen 233 PNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW-N-----MTGTILS 304 (361)
T ss_pred cccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE-e-----eeeeEEe
Confidence 963 3455555 799 9999987421 0 001112222 34445555444 3 5789999
Q ss_pred EEecCCcEEEEEcC
Q 006808 269 AISETGVCYIWYGQ 282 (630)
Q Consensus 269 s~s~dg~i~iwd~~ 282 (630)
+.+.||.|++|...
T Consensus 305 StGdDG~VRLWkan 318 (361)
T KOG2445|consen 305 STGDDGCVRLWKAN 318 (361)
T ss_pred ecCCCceeeehhhh
Confidence 99999999999754
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=171.49 Aligned_cols=256 Identities=14% Similarity=0.133 Sum_probs=186.0
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec
Q 006808 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG 197 (630)
Q Consensus 120 v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~ 197 (630)
..|+.|++.|.++++|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++ ..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 78999999999999999999999999999998889999999999999999999999999 799999999999988887
Q ss_pred CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce---eeeeEEecCCccCCCCCEEEEEecCC
Q 006808 198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 198 h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
...+|+.+.|+|.....+.++-.+..-.+-++..+... .+....... ...+..| ++.|++|++|+..|
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dln~sas~~~f-----dr~g~yIitGtsKG 175 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDLNSSASHGVF-----DRRGKYIITGTSKG 175 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCccccccccccccc-----cCCCCEEEEecCcc
Confidence 77899999999966544444434555566666553321 222222211 1122224 48999999999999
Q ss_pred cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccC----ceeeEEeccCC
Q 006808 275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK----PSFQKILVNSG 350 (630)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~----~~~~~~~~h~~ 350 (630)
.+.++|..+.+.+..++.......-.+.++..+. .+++-+.|.+++.|+.+-+..-|.... ..++.+ ...-
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~----~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv-VNk~ 250 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGR----FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV-VNKL 250 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCc----EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH-Hhhh
Confidence 9999999999888777665522222233556666 888889999999888774433322111 111111 1223
Q ss_pred CcEEEeecCCcceeeccccceeccccceeccc--eeecccCC
Q 006808 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRAN 390 (630)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~ 390 (630)
.-.++.||.||.|+.++.+.-..+++|+-..+ ++.+....
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence 45688999999999666666788999986444 66665443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=173.75 Aligned_cols=241 Identities=12% Similarity=0.177 Sum_probs=188.4
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+++| +++||+.+.+.||.+-.+|.|-||++..+-+.... ..|+.+..+..++|..
T Consensus 24 ~Ps~I--~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g~~drsIE~L~W~e------ 79 (691)
T KOG2048|consen 24 KPSEI--VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHGPEDRSIESLAWAE------ 79 (691)
T ss_pred eccce--EEEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------EecCCCCceeeEEEcc------
Confidence 36788 66799999999999999999999999876554322 1266677888999984
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE--eecCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST 159 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~ 159 (630)
+..|++.+.+|.|.-||+.+++....+. ...+.|++++.+|.+..++.|+.||.+..++...++.... |...+
T Consensus 80 ----~~RLFS~g~sg~i~EwDl~~lk~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 80 ----GGRLFSSGLSGSITEWDLHTLKQKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK 154 (691)
T ss_pred ----CCeEEeecCCceEEEEecccCceeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc
Confidence 6679999999999999999999886664 5778999999999999999999999888888877765443 44456
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee--------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
+.|.+++|+|++..+++|+ |.|++||..++..+.... +...-|.++.|-.++ .++++.+ -|+|.+||.
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS-~G~V~FWd~ 232 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS-AGTVTFWDS 232 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC-CceEEEEcc
Confidence 7999999999999999998 889999999988665221 122347788887665 4666664 899999999
Q ss_pred CCCccccceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 230 DGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
..+... .... |.+.+ .++... +++.++++++.|+.|.-|...+.
T Consensus 233 ~~gTLi-----qS~~~h~adV-l~Lav~-----~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 233 IFGTLI-----QSHSCHDADV-LALAVA-----DNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred cCcchh-----hhhhhhhcce-eEEEEc-----CCCCeEEEccCCCceEEEEecCC
Confidence 988754 1222 33333 344444 78899999999999988876555
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-20 Score=167.37 Aligned_cols=188 Identities=14% Similarity=0.211 Sum_probs=157.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC------CC-----------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------LT----------- 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~------~~----------- 148 (630)
..++.+++.|.+.+||.+.+|.++.++. ||.+.|++++|++.+.++++++.|++..||.. ..
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 4478889999999999999999997775 89999999999999999999999999999962 11
Q ss_pred -------------------C----ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeE
Q 006808 149 -------------------G----SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR 203 (630)
Q Consensus 149 -------------------~----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~ 203 (630)
+ .++..+.+|.+.|.+..|-..|+.+++++ .+..+||+++|.++..+.||....+
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT 318 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence 0 13455778999999999999999999999 7999999999999999999999999
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.++-+|..+.+++++ .|.+.++||++..-. .+..+..+...+....|. -+..+++|+.|.+|+|||+++
T Consensus 319 HcstHptQrLVvTsS-rDtTFRLWDFReaI~----sV~VFQGHtdtVTS~vF~------~dd~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSS-RDTTFRLWDFREAIQ----SVAVFQGHTDTVTSVVFN------TDDRVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ccccCCcceEEEEec-cCceeEeccchhhcc----eeeeecccccceeEEEEe------cCCceeecCCCceEEEeeecc
Confidence 999999988877776 799999999985432 233444555555666664 457799999999999999976
Q ss_pred cc
Q 006808 284 IE 285 (630)
Q Consensus 284 ~~ 285 (630)
.+
T Consensus 388 MR 389 (481)
T KOG0300|consen 388 MR 389 (481)
T ss_pred cc
Confidence 64
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=181.95 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=182.9
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+...+|+.|++||.|-+|++|+...+ -+..++..|...+. |++....+ ..++
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk------------------cla~~ak~--------~~lv 133 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK------------------CLAYIAKN--------NELV 133 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe------------------eeeecccC--------ceeE
Confidence 55667889999999999999999877 56667766655444 44443222 6789
Q ss_pred EEEeCCCeEEEEEccCCee--e--------EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 90 VLGTGGGDVLALAVSAGQL--K--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~--~--------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
++|+-|+.|++||+.++.. + ..+..|+..+|++++.++.|..|++|+..+.+++||.++++.+..+++|.
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT 213 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT 213 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc
Confidence 9999999999999997722 1 12223788899999999999899999999999999999999999999999
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
..|.++..++||+.+++++ |+|++||+...+++.++..|...|.++..+|+-.++++|+ .||.|..=|+++....
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~~-- 290 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAKS-- 290 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCchhh--
Confidence 9999999999999999998 9999999999999999999999999999999999999998 6999999999886432
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..+..-.++- ...... ....-+-+++.|+.|+-|...
T Consensus 291 tlick~daPv--~~l~~~------~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 291 TLICKEDAPV--LKLHLH------EHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEeecCCCch--hhhhhc------cccCCceeeeccccceecCCc
Confidence 1222222221 111111 112223556677788888643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.6e-20 Score=159.82 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=144.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCc--eeEEeecCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~ 159 (630)
+..|++|+.|+.|+|+.++.+. .....+.||++||..++|.. .|.+|++++.||.|.||.-..++ ....+..|.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 7789999999999999998765 23344579999999999965 79999999999999999987763 344567789
Q ss_pred CCeEEEEEccC--CCEEEEeC--CeEEEEECCCC---ceeeEeecCCCCeEEEEEeeC---C-----------cEEEEEe
Q 006808 160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN---G-----------KYVLSSA 218 (630)
Q Consensus 160 ~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~---~-----------~~l~~~~ 218 (630)
..|++++|.|. |-.|++++ |.|.+++.++. ...+....|...|++++|.|. | +.|+++|
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 99999999995 55677776 99999887654 223345689999999999986 4 5688888
Q ss_pred eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.|..|+||+...+.-. .-..+..+...++-+++.+.. .--..+|++++.||++.||-..
T Consensus 183 -cDn~VkiW~~~~~~w~---~e~~l~~H~dwVRDVAwaP~~-gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 183 -CDNLVKIWKFDSDSWK---LERTLEGHKDWVRDVAWAPSV-GLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred -CccceeeeecCCcchh---hhhhhhhcchhhhhhhhcccc-CCCceeeEEecCCCcEEEEEec
Confidence 5999999999886422 222244444444444444110 0113689999999999999754
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=170.23 Aligned_cols=245 Identities=14% Similarity=0.163 Sum_probs=187.7
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..|| -+++|.|+|. .+++++....++.||+.+.+....-. . .|+.......+.-.+.
T Consensus 257 ~fPi--~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~-~--------------~g~e~~~~e~FeVShd----- 314 (514)
T KOG2055|consen 257 KFPI--QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP-P--------------YGVEEKSMERFEVSHD----- 314 (514)
T ss_pred cCcc--ceeeecCCCceEEEecccceEEEEeeccccccccccC-C--------------CCcccchhheeEecCC-----
Confidence 4688 5569999998 88899888899999999887654211 1 1222111111221222
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK- 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~- 160 (630)
+++|++.+..|.|.+....+++.+..+. -.+.|.+++|+.+|+.|++++.+|.|.+||++...+++.|....+
T Consensus 315 ----~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 315 ----SNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred ----CCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 7799999999999999999999886663 558899999999999999999999999999999999999986444
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCC------CceeeEeecCCCCeEEEEEeeCCcEEEEEee-CCCeEEEEEcCC
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG 231 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~------~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~-~d~~i~vwd~~~ 231 (630)
.-++++.+++|.+||+|+ |.|.|||..+ .+++.++..-...|+++.|+|+++.|+.++. .+..+++-.+.+
T Consensus 389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 446778889999999999 9999999654 3566666666778999999999999888763 245789988877
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.... ........+-..++|+.|+ |.+.++|.|...|++.+|.+.
T Consensus 469 ~TVF--sNfP~~n~~vg~vtc~aFS-----P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVF--SNFPTSNTKVGHVTCMAFS-----PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeee--ccCCCCCCcccceEEEEec-----CCCceEEeecCCCceeeEeec
Confidence 5422 0111122344567888888 999999999999999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-19 Score=166.67 Aligned_cols=282 Identities=14% Similarity=0.114 Sum_probs=197.5
Q ss_pred CCcccceeEeEECCCC--CEEEEeeCCCcEEEEECCCCc----EEEEecccccccccccccccccccccccceeeEEecc
Q 006808 2 GSSNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg--~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
.+++| .+++|+|.- +++|+|..-|+|-+||+.+.+ -+..+..|..+ ++++.|+|
T Consensus 185 ~~~Ri--t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~------------------Vs~l~F~P 244 (498)
T KOG4328|consen 185 TDRRI--TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGP------------------VSGLKFSP 244 (498)
T ss_pred cccce--EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCcc------------------ccceEecC
Confidence 35677 666999965 588889899999999995322 23444444444 44555555
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCeee--EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-e
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-L 152 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-~ 152 (630)
.+ ...+++.+.||+|++-|+.++..- ... ......+.++.|+.+...++.++.=|...+||++++.. .
T Consensus 245 ~n--------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 245 AN--------TSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred CC--------hhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 54 567999999999999999876532 122 12345678888998888888888888999999998765 5
Q ss_pred EEeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCce----eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
..+..|...|.+++++|... ++++++ ++++|||++.-.. +-....|...|.++.|||.+-.|++.+ .|..|+
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IR 394 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIR 394 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceE
Confidence 56777888999999999654 567777 8999999986432 223346999999999999988899988 699999
Q ss_pred EEEcCC-CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc-cCceeEEeeccCCC
Q 006808 226 LWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKILSSSEDVN 303 (630)
Q Consensus 226 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 303 (630)
|||..- ..... ....+.|+...-..+.--+..|.|+..+|++|..-..|-|||...++.+.. +.|....+++...+
T Consensus 395 v~dss~~sa~~~--p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~ 472 (498)
T KOG4328|consen 395 VFDSSCISAKDE--PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEF 472 (498)
T ss_pred EeecccccccCC--ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceee
Confidence 999841 11110 122333433221111100112338999999999988999999988886666 56666677766666
Q ss_pred cccccchhhhhhhccc
Q 006808 304 SKSQKSATAAIFAAKL 319 (630)
Q Consensus 304 ~~~~~~~~~~i~~~~~ 319 (630)
.|... .+++|+.
T Consensus 473 HP~~~----~~~aG~~ 484 (498)
T KOG4328|consen 473 HPMRD----TLAAGGN 484 (498)
T ss_pred ccccc----ceeccCC
Confidence 66554 4555554
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-19 Score=168.81 Aligned_cols=206 Identities=14% Similarity=0.201 Sum_probs=159.5
Q ss_pred cccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee---eEEccCCCCCCEEEEEEec-CCCEEEEEeCCC
Q 006808 64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFAT-HGSCIYSAGADG 139 (630)
Q Consensus 64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg 139 (630)
....+++++|+|..+ ..++++|...|+|-+||+.+.+. -..+...|+++|.++.|+| +-..+++.|.||
T Consensus 185 ~~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 185 TDRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred cccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 356899999999874 37899999999999999953321 1234457999999999999 445799999999
Q ss_pred cEEEEeCCCCceeE--EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce-eeEeecCCCCeEEEEEeeCCcEE
Q 006808 140 MVCEIDPLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 140 ~v~iwd~~~~~~~~--~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
+|+.-|+..+..-. ........+..+.|+.+...++++. |...+||++++.. ...+.-|...|++++++|-..++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 99999998764332 2332445778889988777777776 9999999998764 66677788899999999988776
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
+++++-|++.+|||++.-.......+... .+...+..++|+ |.+..|++.+.|..|+|||..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEc-----CCCCceEeeccCCceEEeecc
Confidence 66666899999999987654421123333 345566778887 888889999999999999974
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.9e-18 Score=154.43 Aligned_cols=248 Identities=18% Similarity=0.181 Sum_probs=178.4
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.++.+.|.+. .+.|+++++||.+++|++........+ .|..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus 15 ~IS~v~f~~~---------~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 15 GISSVKFSPS---------SSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ceeeEEEcCc---------CCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence 4555666533 567888889999999999988665444 5889999999987 457999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
.++... .+..|..+|.|+.+.+....+++|+ ++|++||.+.......+. ....|.++..+ |..|++++ .++.+
T Consensus 83 n~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~-~~r~v 157 (323)
T KOG1036|consen 83 NTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGT-SDRKV 157 (323)
T ss_pred cCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEee-cCceE
Confidence 888654 4556899999999999878888888 899999998765555554 23477777655 67788877 59999
Q ss_pred EEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCc
Q 006808 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (630)
.+||+++.... ....-..-...++++++- |++.-.++++-||+|.+=.+.........+ .+..|....
T Consensus 158 ~iyDLRn~~~~---~q~reS~lkyqtR~v~~~-----pn~eGy~~sSieGRVavE~~d~s~~~~skk---yaFkCHr~~- 225 (323)
T KOG1036|consen 158 LIYDLRNLDEP---FQRRESSLKYQTRCVALV-----PNGEGYVVSSIEGRVAVEYFDDSEEAQSKK---YAFKCHRLS- 225 (323)
T ss_pred EEEEcccccch---hhhccccceeEEEEEEEe-----cCCCceEEEeecceEEEEccCCchHHhhhc---eeEEeeecc-
Confidence 99999987643 111112234455666655 777778899999998875444332222222 111111100
Q ss_pred ccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.....+.| +|.+++|+|-...+ +||+.||.+.+|+..++
T Consensus 226 ----------------------~~~~~~~y----------------PVNai~Fhp~~~tf-aTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 226 ----------------------EKDTEIIY----------------PVNAIAFHPIHGTF-ATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ----------------------cCCceEEE----------------EeceeEeccccceE-EecCCCceEEEccCcch
Confidence 11112233 79999999998888 99999999999998763
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=163.88 Aligned_cols=285 Identities=12% Similarity=0.151 Sum_probs=197.6
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe--EEEEEcc
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVS 104 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--v~iwd~~ 104 (630)
.++++||...-.....+..+.. ...+..+.|.. .++|++++..|. +++|.-.
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~----------------~pg~~s~~w~~----------~n~lvvas~~gdk~~~~~~K~ 65 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTA----------------EPGDFSFNWQR----------RNFLVVASMAGDKVMRIKEKD 65 (673)
T ss_pred CceEEeecccccCccccccCCC----------------CCcceeeeccc----------cceEEEeecCCceeEEEeccc
Confidence 4799999876655544443222 12356677765 344666665554 7788643
Q ss_pred CC--eee-EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--C
Q 006808 105 AG--QLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--G 179 (630)
Q Consensus 105 ~~--~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g 179 (630)
.. +.. .....+ ..-.|++......++++|+..++|+|||++...+.+.+++|...|+++.++-...+||+++ |
T Consensus 66 g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 66 GKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred CCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence 32 121 111112 2344555555567899999999999999998888888999999999999999999999998 8
Q ss_pred eEEEEECCCCceeeEeecCCC-CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCC
Q 006808 180 QLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (630)
Q Consensus 180 ~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (630)
.|.|..+.++..-.+|....+ .|+-+.|+|..+++++..+++|.|.+||+....+. ..+.-.|. ....-+||++
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~~~~~Hs-AP~~gicfsp- 218 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FHASEAHS-APCRGICFSP- 218 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cchhhhcc-CCcCcceecC-
Confidence 999999999988888875434 46689999999998888888999999999887644 22222233 3445556651
Q ss_pred ccCCCCCEEEEEecCCcEEEEEcCCcccccccC--ceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcC
Q 006808 259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (630)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (630)
.+...|++.+.|+.|.+||..+........ .+-..+. |++.+. ++++|+..|.+.. .+-.
T Consensus 219 ---sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstva----f~~~G~----~L~aG~s~G~~i~-------YD~R 280 (673)
T KOG4378|consen 219 ---SNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVA----FSECGT----YLCAGNSKGELIA-------YDMR 280 (673)
T ss_pred ---CccceEEEecccceEEEeecccccccceeeecCCcceee----ecCCce----EEEeecCCceEEE-------Eecc
Confidence 345778889999999999987654433221 1112222 677777 8888888553333 2223
Q ss_pred ccCceeeEEeccCCCcEEEeecCCcc
Q 006808 337 LLKPSFQKILVNSGEDINLNCSQDGV 362 (630)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (630)
.....+..+..|...|.+++|-|.-.
T Consensus 281 ~~k~Pv~v~sah~~sVt~vafq~s~t 306 (673)
T KOG4378|consen 281 STKAPVAVRSAHDASVTRVAFQPSPT 306 (673)
T ss_pred cCCCCceEeeecccceeEEEeeecce
Confidence 34556777888999999999988753
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-18 Score=174.59 Aligned_cols=263 Identities=14% Similarity=0.092 Sum_probs=194.4
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC-eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.+.++|.+. +.+|++|+.+|.|++|+.... +....+ ..+...|.+++. .+.+|++|+.+++|..|.+
T Consensus 16 ~t~i~~d~~---------gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 16 LTLICYDPD---------GEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIAC--YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred eEEEEEcCC---------CCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEee--cccceEEeeccceEEEeeC
Confidence 455666554 779999999999999998776 333233 236777888876 4558999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
.+++.-..+....-++.+++|+.+|+++|.|+ -.|++.+.........+.+|.++|.++.|+|.+.+|++++ .||.+
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v 162 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV 162 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence 88876545555567899999999999999999 5899999999988999999999999999999999999988 59999
Q ss_pred EEEEcCCCccccce-ee-eeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEe-ecc
Q 006808 225 ALWRTDGVKKQSAS-CV-LAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-SSE 300 (630)
Q Consensus 225 ~vwd~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~ 300 (630)
++|++..+...... .+ ...+.. ..+.....|+ |+|..+++.+.|+.|.+|+..++............. .+.
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-----PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeec-----CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 99999987643100 00 011111 3344555565 999999999999999999998887665433322111 223
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCccee
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (630)
..++|.++ ||+++..+|.+-+|+ ... .+. ......|.+++|.|++.-|
T Consensus 238 ~~wsPnG~----YiAAs~~~g~I~vWn-----v~t------~~~-~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 238 LQWSPNGK----YIAASTLDGQILVWN-----VDT------HER-HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EEEcCCCc----EEeeeccCCcEEEEe-----ccc------chh-ccccceeEEEecCCCCCee
Confidence 33889888 999999977444433 111 111 1234568999999998876
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-19 Score=189.54 Aligned_cols=247 Identities=15% Similarity=0.196 Sum_probs=180.2
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC---Cee--eEEccCCCCCCEEEEEEecCC-CEEEEEeCC
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA---GQL--KWRLSDCHPGGVSAISFATHG-SCIYSAGAD 138 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~---~~~--~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~d 138 (630)
......++|.+...+. ..+|+.|..||.|.+||... +.. +......|.+.|.++.|++.. +.+++|+.|
T Consensus 64 ~~rF~kL~W~~~g~~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred cccceeeeecccCCCc-----cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC
Confidence 4567889998876432 35789999999999999876 221 122335699999999999954 589999999
Q ss_pred CcEEEEeCCCCceeEEee--cCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCC--CeEEEEEeeCC
Q 006808 139 GMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNG 211 (630)
Q Consensus 139 g~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~ 211 (630)
|.|.|||+...+.-.++. .....|.+++|+.. ..+|++++ |.+.|||++..+.+-.+..|.+ .+..+.|+|++
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCC
Confidence 999999998754433332 13458999999984 45677776 7999999999988877766654 47889999987
Q ss_pred c-EEEEEeeCCC--eEEEEEcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 212 K-YVLSSAVGER--YIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 212 ~-~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
. .+++++.+|+ .|.+||++..... ...+ .|...++...|.. .|..++++++.|++|.+|+..+++.+
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP----~k~~~~H~~GilslsWc~-----~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSP----LKILEGHQRGILSLSWCP-----QDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCc----hhhhcccccceeeeccCC-----CCchhhhcccCCCCeeEecCCCceEe
Confidence 4 4555543344 7999999876533 2233 4555666655554 56699999999999999999999998
Q ss_pred cccCceeEEeeccCCCcccccchhhhhhhccccccccCCcee
Q 006808 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (630)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (630)
..... ...++....|.|... ..+++++++|.|.++...
T Consensus 290 ~~~p~-~~nW~fdv~w~pr~P---~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 290 GELPA-QGNWCFDVQWCPRNP---SVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred eecCC-CCcceeeeeecCCCc---chhhhheeccceeeeeee
Confidence 87755 334443333555443 278899999987776543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-17 Score=148.85 Aligned_cols=268 Identities=11% Similarity=0.073 Sum_probs=178.0
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeE---EccCCCCCCEEEEEEec--CCCEEEEEe
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFAT--HGSCIYSAG 136 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~---~~~~~h~~~v~~~~~s~--~g~~l~s~~ 136 (630)
+|. ..+.|+.|... |+.+++|+.|++|+|||......-+ .-.+.|.+.|..+.|.+ -|+.+++++
T Consensus 11 ~h~-DlihdVs~D~~---------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 11 GHK-DLIHDVSFDFY---------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred CCc-ceeeeeeeccc---------CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 444 35677877776 7789999999999999975443221 22357999999999955 588899999
Q ss_pred CCCcEEEEeCC---------CCceeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCC------ceeeEee-
Q 006808 137 ADGMVCEIDPL---------TGSLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH------KKMQKFS- 196 (630)
Q Consensus 137 ~dg~v~iwd~~---------~~~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~------~~~~~~~- 196 (630)
.|+++.||.-. ......++......|+.+.|.|. |-.+|+++ |.++||+.... .....+.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 99999999742 11234456667789999999994 66788877 99999976432 2222222
Q ss_pred ------cCCCCeEEEEEeeC---CcEEEEEeeCC-----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC
Q 006808 197 ------GHPGAVRFMTFSDN---GKYVLSSAVGE-----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (630)
Q Consensus 197 ------~h~~~v~~l~~sp~---~~~l~~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (630)
.+..+..|+.|+|. ..+|++++ .+ +.++||........ ...+..+......+..++|.+..- .
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs-~e~a~~~~~~~Iye~~e~~rK-w~kva~L~d~~dpI~di~wAPn~G-r 237 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS-DEDAPHLNKVKIYEYNENGRK-WLKVAELPDHTDPIRDISWAPNIG-R 237 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEc-ccCCccccceEEEEecCCcce-eeeehhcCCCCCcceeeeeccccC-C
Confidence 35667889999974 35677765 33 37888887665422 123333444555566666652110 1
Q ss_pred CCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCcee
Q 006808 263 AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF 342 (630)
Q Consensus 263 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~ 342 (630)
.-..||+++.|| |+||++.....--..+ ....+..- + + +....+
T Consensus 238 ~y~~lAvA~kDg-v~I~~v~~~~s~i~~e---------e~~~~~~~------------~-----~---------l~v~~v 281 (361)
T KOG2445|consen 238 SYHLLAVATKDG-VRIFKVKVARSAIEEE---------EVLAPDLM------------T-----D---------LPVEKV 281 (361)
T ss_pred ceeeEEEeecCc-EEEEEEeeccchhhhh---------cccCCCCc------------c-----c---------cceEEe
Confidence 235789999999 9999985432100000 00011110 0 1 111223
Q ss_pred eEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 343 QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..+..|.++|+.+.|.--|..| .|.+.||.+|+|..
T Consensus 282 s~~~~H~~~VWrv~wNmtGtiL-sStGdDG~VRLWka 317 (361)
T KOG2445|consen 282 SELDDHNGEVWRVRWNMTGTIL-SSTGDDGCVRLWKA 317 (361)
T ss_pred eeccCCCCceEEEEEeeeeeEE-eecCCCceeeehhh
Confidence 3455899999999999999999 99999999999964
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.7e-18 Score=160.17 Aligned_cols=206 Identities=14% Similarity=0.172 Sum_probs=156.6
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeee--------------------EEccCCCCCCEEEEEEe
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--------------------WRLSDCHPGGVSAISFA 126 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~--------------------~~~~~~h~~~v~~~~~s 126 (630)
...|+.|.....+.. ..++++++|+.+..|.|||+.--..+ .....+|+..|.+++|+
T Consensus 175 fPLC~ewld~~~~~~--~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSG--GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cchhhhhhhcCCCCC--CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 346888876622111 12889999999999999998532110 00113688899999998
Q ss_pred cCC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCcee-eEeecCCCC
Q 006808 127 THG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGA 201 (630)
Q Consensus 127 ~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~-~~~~~h~~~ 201 (630)
..- +.|++||.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+ ++|.+.|.+..... ..++ ..+.
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~ 331 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGE 331 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccc
Confidence 754 4589999999999999999999999999999999999999 466788888 89999999853222 2222 4578
Q ss_pred eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 202 v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|-.++|.|.....+.++..||+++-+|++.... +++.+..+...+..++++. ....++++++.|+.+++|++
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~----~vwt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK----PVWTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCC----ceeEEEeccCCcceEEecC----CCCcceeeccccceEEEEee
Confidence 999999998876666666899999999998753 4666665666677777662 33578999999999999997
Q ss_pred CC
Q 006808 282 QN 283 (630)
Q Consensus 282 ~~ 283 (630)
..
T Consensus 404 ~~ 405 (463)
T KOG0270|consen 404 DV 405 (463)
T ss_pred cC
Confidence 43
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=169.41 Aligned_cols=121 Identities=21% Similarity=0.401 Sum_probs=95.3
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..|+++ .|+| +..+||+||.|..|+||.+..|.... +.. +...-|+....+.|+.|++..
T Consensus 80 d~VtDl--~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-LSa-----------pe~~~g~~~~~vE~l~fHpTa----- 140 (1012)
T KOG1445|consen 80 DQVTDL--GFSPFADELLATCSRDEPVKIWKLPRGHSQK-LSA-----------PEIDVGGGNVIVECLRFHPTA----- 140 (1012)
T ss_pred ceeecc--CccccchhhhhcccCCCeeEEEecCCCcccc-cCC-----------cceeecCCceEEEEeecccCc-----
Confidence 456566 8999 55689999999999999987543322 211 111236667788899998874
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
.-|+..+..|.++|||+.+++....+ .+|...|.+..|+.||..+++++.|..|+|||.+.
T Consensus 141 ----Dgil~s~a~g~v~i~D~stqk~~~el-~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 141 ----DGILASGAHGSVYITDISTQKTAVEL-SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred ----CceEEeccCceEEEEEcccCceeecc-cCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 33666677899999999999988666 48999999999999999999999999999999763
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-18 Score=154.81 Aligned_cols=296 Identities=19% Similarity=0.215 Sum_probs=196.6
Q ss_pred cccceeEeEECC-----CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 4 SNIRDILTSFSP-----ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 4 ~~V~~~~~~fs~-----dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.|| ..++|++ .-+.+|+.+. +++.+|+.....-+..++.... ..+....+ -++|.-...
T Consensus 39 ~~I--~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D------------~d~~Esfy-tcsw~yd~~ 102 (385)
T KOG1034|consen 39 KPI--FGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYAD------------EDHDESFY-TCSWSYDSN 102 (385)
T ss_pred Ccc--ceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccC------------CCCCcceE-EEEEEecCC
Confidence 467 4448875 2356777765 5889998754332222221111 01222223 345654332
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEee-
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR- 156 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~- 156 (630)
. +.-++++|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. ++++++|.|..|++|++++..|+..|-
T Consensus 103 ~-----~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 103 T-----GNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred C-----CCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 1 1567888889999999999999988665 5899999999999965 678999999999999999999998865
Q ss_pred --cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce------e----------------e------EeecCCCCeEE
Q 006808 157 --ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK------M----------------Q------KFSGHPGAVRF 204 (630)
Q Consensus 157 --~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~------~----------------~------~~~~h~~~v~~ 204 (630)
+|...|.++.|+++|.++++++ .++++|++...+. . . +-..|...|-|
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 5888999999999999999998 7999999973211 0 0 11235555666
Q ss_pred EEEeeCCcEEEEEeeCCCeEEEEEcCC-Ccc-----cccee---eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 205 MTFSDNGKYVLSSAVGERYIALWRTDG-VKK-----QSASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 205 l~~sp~~~~l~~~~~~d~~i~vwd~~~-~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
+.|- |.++++-+ .++.|..|..-. .+. .+..+ ...+..+...+..+-| .|+|-+++||.|...|.
T Consensus 257 vrw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf---~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 257 VRWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF---AFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE---eecHHHHHHhhccCCCc
Confidence 6665 67888877 488999998722 111 11111 1122222222222222 24577899999999999
Q ss_pred EEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE
Q 006808 276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL 355 (630)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~ 355 (630)
+++||+++-+... .+ .... + .....|.+.
T Consensus 331 v~vwdL~~~ep~~---~t--tl~~----s------------------------------------------~~~~tVRQ~ 359 (385)
T KOG1034|consen 331 VYVWDLDNNEPPK---CT--TLTH----S------------------------------------------KSGSTVRQT 359 (385)
T ss_pred EEEEECCCCCCcc---Cc--eEEe----c------------------------------------------cccceeeee
Confidence 9999997665420 00 0000 0 111257888
Q ss_pred eecCCcceeeccccceecccccee
Q 006808 356 NCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 356 ~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+||-||.+| +....|+++-.|+.
T Consensus 360 sfS~dgs~l-v~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 360 SFSRDGSIL-VLVCDDGTVWRWDR 382 (385)
T ss_pred eecccCcEE-EEEeCCCcEEEEEe
Confidence 999999999 66666999888875
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=151.84 Aligned_cols=189 Identities=21% Similarity=0.293 Sum_probs=151.7
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+.+-...++.++++++.|..|.+|++. |+.+..+............+|+ +++
T Consensus 191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~---------------------------GRF 242 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD---------------------------GRF 242 (420)
T ss_pred EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC---------------------------CcE
Confidence 445677788999999999999999998 9988888766655555555655 899
Q ss_pred EEEEeCCCeEEEEEccC---Cee-----eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-------CceeE
Q 006808 89 LVLGTGGGDVLALAVSA---GQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLG 153 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~---~~~-----~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-------~~~~~ 153 (630)
+++++..-.|++|.+-- |.. +.. +.||.+.|..++|+++...+++++.||++++||+.- .+.++
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999999999999742 211 222 368999999999999999999999999999999752 22222
Q ss_pred Ee----ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 154 KF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 154 ~~----~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
+. ....+....++.+|.|..|+.+. ..+++|..++|+....+ ..|...|++++|+++|++++++| |+.++++
T Consensus 322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~ 399 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVI 399 (420)
T ss_pred cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeee
Confidence 22 12233445899999999999988 69999999998876666 46899999999999999999986 8999998
Q ss_pred E
Q 006808 228 R 228 (630)
Q Consensus 228 d 228 (630)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 6
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-18 Score=159.18 Aligned_cols=258 Identities=14% Similarity=0.117 Sum_probs=163.4
Q ss_pred cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC--------C--------CceeEEeecCCCCeEEEEEccCCCEEEE
Q 006808 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------T--------GSLLGKFRASTKGISCMAVSSDGKMLAT 176 (630)
Q Consensus 113 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 176 (630)
+..|...|+++.|+|+|..+++|+.+|.|.+|-.. + ......+.+|...|+.++|+|++.++++
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s 140 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS 140 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence 34799999999999999999999999999999754 2 2234456778899999999999999999
Q ss_pred eC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee--eee--ecC--Cce
Q 006808 177 AA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC--VLA--MEH--PAV 248 (630)
Q Consensus 177 ~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~--~~~--~~~--~~~ 248 (630)
++ +.+++||+..|.....+..|...+..++|.|-++|+++-++ |+..+.+.+...+...... +.. ..+ .+.
T Consensus 141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~-dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS-DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc-CcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 98 89999999999999999999999999999999999999884 8877777765543221000 000 001 111
Q ss_pred eee-------eEEecCCccCCCCCEEEEEec----CCc-----EEEEEcCCcccc----cccCceeEEee-ccCCCc--c
Q 006808 249 FMD-------CRCIDNGGVDDAGLYVLAISE----TGV-----CYIWYGQNIEEL----RNTKATKILSS-SEDVNS--K 305 (630)
Q Consensus 249 ~~~-------~~~~~~~~~~~~~~~l~s~s~----dg~-----i~iwd~~~~~~~----~~~~~~~~~~~-~~~~~~--~ 305 (630)
... -.+|....|+|+|.++++.+. .|. .++|+-+..+.- ...+.....+. |...|- |
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp 299 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRP 299 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecc
Confidence 111 012223345699999998653 333 355554322211 11111111221 111110 0
Q ss_pred ccc------chhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 306 SQK------SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 306 ~~~------~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
... -+...+++....+.+++|+ +-...|.+---+.|...++.++|++||.+| +..|.||=..+-.+
T Consensus 300 ~~~~~~~~~lpyrlvfaiAt~~svyvyd-------tq~~~P~~~v~nihy~~iTDiaws~dg~~l-~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 300 LSSEKFLFVLPYRLVFAIATKNSVYVYD-------TQTLEPLAVVDNIHYSAITDIAWSDDGSVL-LVSSTDGFCSLVTF 371 (434)
T ss_pred ccccccccccccceEEEEeecceEEEec-------cccccceEEEeeeeeeeecceeecCCCcEE-EEeccCCceEEEEE
Confidence 000 0111222222222233322 233345455556899999999999999999 66777876655433
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=163.05 Aligned_cols=244 Identities=17% Similarity=0.224 Sum_probs=173.2
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEE--ecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..| +.+.|.|-...|++++.|.++++||+.++++... +.+|.+.+.+.+|.+. +
T Consensus 101 nAi--fDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~------------------n---- 156 (720)
T KOG0321|consen 101 NAI--FDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT------------------N---- 156 (720)
T ss_pred cee--EeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC------------------C----
Confidence 456 4559999556889999999999999999998776 8888888887777765 1
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCee--e----EEc--------------------cCCCCCCEEE---EEEecCCCEE
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQL--K----WRL--------------------SDCHPGGVSA---ISFATHGSCI 132 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~--~----~~~--------------------~~~h~~~v~~---~~~s~~g~~l 132 (630)
...+++|+.||.|.|||++-... . ..+ ..+|...|.+ +.+..|...|
T Consensus 157 ----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tl 232 (720)
T KOG0321|consen 157 ----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTL 232 (720)
T ss_pred ----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecccee
Confidence 56789999999999999964320 0 000 0134444555 5556688899
Q ss_pred EEEeC-CCcEEEEeCCCCceeE--------EeecC---CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEee
Q 006808 133 YSAGA-DGMVCEIDPLTGSLLG--------KFRAS---TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFS 196 (630)
Q Consensus 133 ~s~~~-dg~v~iwd~~~~~~~~--------~~~~~---~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~ 196 (630)
+++|. |+.|++||++...... .+..| .-.+.++.....|.+|++.+ ++|++||+.+.. ++..+.
T Consensus 233 aSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s 312 (720)
T KOG0321|consen 233 ASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS 312 (720)
T ss_pred eeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc
Confidence 99887 9999999998654322 12223 23677888888888776655 999999997643 344455
Q ss_pred cCCCCe--EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 197 GHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 197 ~h~~~v--~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
++...- ..-..+|++.++++++ .|...++|.+.+.... .....+|...+..+.|.+ ..-.-+++++.|.
T Consensus 313 g~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~---~~~l~Ght~eVt~V~w~p-----S~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 313 GKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAP---PALLLGHTREVTTVRWLP-----SATTPVATCSDDF 383 (720)
T ss_pred CcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccCC---hhhhhCcceEEEEEeecc-----ccCCCceeeccCc
Confidence 443211 1224589999999988 5999999999987755 444556666555555554 2234577889999
Q ss_pred cEEEEEcCCc
Q 006808 275 VCYIWYGQNI 284 (630)
Q Consensus 275 ~i~iwd~~~~ 284 (630)
.++||++..+
T Consensus 384 ~~kiW~l~~~ 393 (720)
T KOG0321|consen 384 RVKIWRLSNG 393 (720)
T ss_pred ceEEEeccCc
Confidence 9999998554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=153.31 Aligned_cols=238 Identities=12% Similarity=0.173 Sum_probs=176.7
Q ss_pred eEeEECCC----CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 9 ILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 9 ~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
..|+|+-+ ..++|.|+.-|.|+|.|+.++++...+.+|..+++.+.+.|.
T Consensus 93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-------------------------- 146 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-------------------------- 146 (385)
T ss_pred EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--------------------------
Confidence 34566543 348899999999999999999999999999998888777765
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE---------
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG--------- 153 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~--------- 153 (630)
..+++++|+.|..|++|++++..++..+- .+|...|.++.|+++|.+|+++|.|..+++|++...+...
T Consensus 147 ~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 147 RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 16789999999999999999999875553 5799999999999999999999999999999997432100
Q ss_pred -------------------EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECC-CCc-------------eeeEeecC
Q 006808 154 -------------------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHK-------------KMQKFSGH 198 (630)
Q Consensus 154 -------------------~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~-~~~-------------~~~~~~~h 198 (630)
+-..|...|-|+.|- |.++++-+ +.|..|-.- -++ .+.++.-.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 011244455555554 56777766 899999761 111 12333334
Q ss_pred CCCeEEEEE--eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcE
Q 006808 199 PGAVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC 276 (630)
Q Consensus 199 ~~~v~~l~~--sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i 276 (630)
...|.-+.| .|-++.|+.+. ..|.+.+||++...+. ....+........+...+|+ .||..|+..+.|+.|
T Consensus 305 ~c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~-~~ttl~~s~~~~tVRQ~sfS-----~dgs~lv~vcdd~~V 377 (385)
T KOG1034|consen 305 MCDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPP-KCTTLTHSKSGSTVRQTSFS-----RDGSILVLVCDDGTV 377 (385)
T ss_pred ccceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCc-cCceEEeccccceeeeeeec-----ccCcEEEEEeCCCcE
Confidence 445555544 56677888777 6999999999987754 11222333345566667776 899999999999999
Q ss_pred EEEEc
Q 006808 277 YIWYG 281 (630)
Q Consensus 277 ~iwd~ 281 (630)
.-||.
T Consensus 378 wrwdr 382 (385)
T KOG1034|consen 378 WRWDR 382 (385)
T ss_pred EEEEe
Confidence 99985
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-17 Score=151.81 Aligned_cols=311 Identities=13% Similarity=0.103 Sum_probs=208.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.+-|+++ .||.+|++||+|+.|..++||++...-.-.+-+... +...|....+.|++|...
T Consensus 56 ~GCiNAl--qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-----------~~~~~H~SNIF~L~F~~~------ 116 (609)
T KOG4227|consen 56 TGCINAL--QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-----------VMEHPHRSNIFSLEFDLE------ 116 (609)
T ss_pred cccccee--eeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-----------eccCccccceEEEEEccC------
Confidence 3557555 999999999999999999999986321111101000 001222356777887764
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccC-CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEe--ecC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKF--RAS 158 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~--~~~ 158 (630)
+.++++|..+|+|...|+.+.+.+..+.. ...+.|..+..+|..+.|++.+.++.|.+||.+..+ .+..+ ...
T Consensus 117 ---N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 ---NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred ---CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 67799999999999999999988755431 223589999999998999999999999999998665 33222 223
Q ss_pred CCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCce-eeE---eecC---CCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 159 TKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQK---FSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 159 ~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~-~~~---~~~h---~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
....+.+.|+|... +|++.+ +-+-+||++..+. +.. +.+- .....++.|+|+|..|++-- ....-.+||
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D 272 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFD 272 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEee
Confidence 44778899999654 556665 7889999876542 211 1222 22346789999999998865 355567788
Q ss_pred cCCCccccceeeeeecCCc------eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCC
Q 006808 229 TDGVKKQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (630)
+.+.+.. ++...|.. ..+..++|. +...+++|+.+=.|++|.+.....-..+......
T Consensus 273 ~~S~R~~----V~k~D~N~~GY~N~~T~KS~~F~------~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~------ 336 (609)
T KOG4227|consen 273 FISQRCF----VLKSDHNPNGYCNIKTIKSMTFI------DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHD------ 336 (609)
T ss_pred eecccce----eEeccCCCCcceeeeeeeeeeee------cceeeeccCcccceEEEecCCCccccCccccCcc------
Confidence 8886644 55666543 123344553 4566999999999999998544332221110000
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
....+ ....+...|-.+++|.+-+..+.|+|...+| +|.+..+++++|.-
T Consensus 337 ---~~~~~-----------------------~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l-~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 337 ---EEEMP-----------------------SEIFIEKELTVLRGHRSVPNQVRFSQHNNLL-VSSGVENSFKLWSD 386 (609)
T ss_pred ---hhhCc-----------------------hhheecceeEEEecccccccceeecCCcceE-eccchhhheecccc
Confidence 00000 0011223345677999999999999999999 89899999999963
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=182.92 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=179.3
Q ss_pred EeEECCCCCE----EEEeeCCCcEEEEECCCC------cEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 10 LTSFSPALDY----FAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 10 ~~~fs~dg~~----las~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++|.+.|.. +|.|..||.|.+||...- ..+.++..|.+.+.. +.|+++.
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g------------------LDfN~~q-- 128 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLG------------------LDFNPFQ-- 128 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceee------------------eeccccC--
Confidence 3489988765 888889999999998652 123444445544443 4444443
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
++++++|+.+|.|.|||+..-+...... ......|.+++|+..-. .|++++.+|.+.|||++..+.+-.+..
T Consensus 129 ------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~ 202 (1049)
T KOG0307|consen 129 ------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD 202 (1049)
T ss_pred ------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence 7799999999999999998866544442 22456799999988544 478888999999999999988877776
Q ss_pred CCC--CeEEEEEccCC-CEEEEeC-----CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEE
Q 006808 158 STK--GISCMAVSSDG-KMLATAA-----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALW 227 (630)
Q Consensus 158 ~~~--~v~~l~~~p~~-~~l~~~~-----g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vw 227 (630)
+.. .+..++|+|++ ..+++++ -.|.+||++.. ..++++.+|...|.++.|.+.+ .++++++ .|+.|.+|
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~w 281 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICW 281 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEe
Confidence 655 57889999975 4566655 38999999865 4677889999999999999877 6777777 79999999
Q ss_pred EcCCCccccceeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 228 RTDGVKKQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
+..+++.. ..+.. ...+..+.|.. .+...+++++.||.|.||.+....
T Consensus 282 N~~tgEvl-----~~~p~~~nW~fdv~w~p-----r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 282 NPNTGEVL-----GELPAQGNWCFDVQWCP-----RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cCCCceEe-----eecCCCCcceeeeeecC-----CCcchhhhheeccceeeeeeecCC
Confidence 99998733 33333 34455555554 455688889999999999987664
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=154.34 Aligned_cols=208 Identities=17% Similarity=0.273 Sum_probs=164.0
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
++|| +.++|+| +...+|+||.|.+|.||.+-.+.....+.. ++.. ..|| ...+..+.|+|..
T Consensus 81 t~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte---pvv~-------L~gH-~rrVg~V~wHPtA---- 143 (472)
T KOG0303|consen 81 TAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE---PVVE-------LYGH-QRRVGLVQWHPTA---- 143 (472)
T ss_pred cccc--cccccCccCCceeecCCCCceEEEEECCCcccccCccc---ceEE-------Eeec-ceeEEEEeecccc----
Confidence 5788 7779999 557899999999999999876655443321 1110 1245 3366778898886
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK- 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~- 160 (630)
.+.|++++.|..|.+||+.+|+.+.++. |...|.++.|+.+|.+|++++.|..|++||.++++.+..-.+|.+
T Consensus 144 ----~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 144 ----PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred ----hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 6789999999999999999999887763 999999999999999999999999999999999999988777776
Q ss_pred CeEEEEEccCCCEEEEeC-----CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 GISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.-..+.|-.+|.++.+|- ..+-+||..+-.. ..++. ....|.---|.|+.+.++.+|-+|+.|+.|.+...
T Consensus 218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 556677888888555553 5899999876542 23333 34556666788999999999989999999999876
Q ss_pred cc
Q 006808 233 KK 234 (630)
Q Consensus 233 ~~ 234 (630)
.+
T Consensus 297 ~P 298 (472)
T KOG0303|consen 297 PP 298 (472)
T ss_pred Cc
Confidence 53
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-17 Score=144.97 Aligned_cols=292 Identities=11% Similarity=0.142 Sum_probs=194.0
Q ss_pred cccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.|+.+ ...+ .|+|+++|+.||.|.|||+++..... -.+......+++-.+. ..+| ...++.+.|.|.+
T Consensus 44 GsvNsL--~id~tegrymlSGgadgsi~v~Dl~n~t~~e-~s~li~k~~c~v~~~h-~~~H-ky~iss~~WyP~D----- 113 (397)
T KOG4283|consen 44 GSVNSL--QIDLTEGRYMLSGGADGSIAVFDLQNATDYE-ASGLIAKHKCIVAKQH-ENGH-KYAISSAIWYPID----- 113 (397)
T ss_pred Ccccee--eeccccceEEeecCCCccEEEEEeccccchh-hccceeheeeeccccC-Cccc-eeeeeeeEEeeec-----
Confidence 567555 6666 58999999999999999998654110 0000000000000000 1244 3578889999998
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
..++.+++.|.++++||..+-+....+. ..+.|.+-+++|- ..++++|..+-.|++.|+.+|.+.+++.+|.
T Consensus 114 ---tGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 114 ---TGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred ---CceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence 7889999999999999999988876663 5678999999883 3357788888999999999999999999999
Q ss_pred CCeEEEEEccCCCEEE-EeC--CeEEEEECCCC-ceeeE--------------eecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 160 KGISCMAVSSDGKMLA-TAA--GQLKTFNCSDH-KKMQK--------------FSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~-~~~--g~i~lwd~~~~-~~~~~--------------~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
..|.++.|+|...+++ +|+ |.|++||++.. .+... -..|.+.+.+++|+.++.++++++ .|
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-td 267 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-TD 267 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-Cc
Confidence 9999999999887755 455 89999999754 22222 245778899999999999999999 58
Q ss_pred CeEEEEEcCCCccccc----eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEe
Q 006808 222 RYIALWRTDGVKKQSA----SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (630)
..+++|+..++..... .+.....+....+.+. +...++---.++.+.++++-.+..++-.+.....+
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~---------~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i 338 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSM---------DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRI 338 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEeec---------ccceEEEEecCCeEEEEEccCceEEEeeeccccee
Confidence 8999999988764210 0111111112222211 12222222334666666666665555433332222
Q ss_pred eccCCCcccccchhhhhhhccccccccC
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
.|. .+.++.+ ..+++..++.+..
T Consensus 339 ~c~-~~~~~fq----~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 339 NCA-AYRPDFE----QCFTGDMNGNIYM 361 (397)
T ss_pred eEE-eecCchh----hhhccccCCcccc
Confidence 221 1455544 6778888765444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-17 Score=156.24 Aligned_cols=187 Identities=16% Similarity=0.229 Sum_probs=151.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-CeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISC 164 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~ 164 (630)
..++++|+.++.|+|||++ .+.+.+++.+|...|+++.++....+|++++..|.|.+..+.++....+|....+ .|.-
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred ceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 4578899999999999999 4455577789999999999999999999999999999999999988888886644 5668
Q ss_pred EEEccCCCEEEE-eC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcE-EEEEeeCCCeEEEEEcCCCcccccee
Q 006808 165 MAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKY-VLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 165 l~~~p~~~~l~~-~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~-l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+.|+|..+++++ ++ |.|.+||+....++..+ ..|..|...|+|+|.+.. |++.| .|+.|.+||+...... .
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~yD~~s~~s~---~ 245 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINIYDIRSQAST---D 245 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEEeeccccccc---c
Confidence 999998776554 44 99999999887776665 579999999999997765 55555 7999999999876533 2
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+...++ ...++|. ++|.+|++|+..|.|..||++..+
T Consensus 246 ~l~y~~P---lstvaf~-----~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 246 RLTYSHP---LSTVAFS-----ECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eeeecCC---cceeeec-----CCceEEEeecCCceEEEEecccCC
Confidence 2333343 3455665 999999999999999999987553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=141.07 Aligned_cols=234 Identities=14% Similarity=0.161 Sum_probs=172.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
....|+.++..|..|+.|| .++|+............. +..+.-+.|. ..+
T Consensus 9 ~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~------------------~~~IvEmLFS-----------SSL 58 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTE------------------GVSIVEMLFS-----------SSL 58 (391)
T ss_pred eeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCC------------------CeEEEEeecc-----------cce
Confidence 4457999999999999987 488887654331111100 1111111121 445
Q ss_pred EEEEeCCC--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC---CCCeE
Q 006808 89 LVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGIS 163 (630)
Q Consensus 89 l~~~~~~g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~ 163 (630)
+++.+.+. .+++++...+..+..+. ...+|.++.++.+ .|+++=.+ .|+|||+++.+.++++... ...+.
T Consensus 59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 59 VAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred eEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence 66666543 38999999988887775 4567999999753 56666444 4999999999998887643 34677
Q ss_pred EEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 164 CMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
++.+++.+.+++.-+ |.|.+||..+-+.+..+..|.+++.+++|+++|.+|++++.....|||+.+.++++. .
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl---~ 210 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL---Y 210 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe---e
Confidence 777777778998755 899999999999999999999999999999999999999843335899999998754 3
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+..+.....+..++|+ |++.+|++.+..++|+||.+....
T Consensus 211 eFRRG~~~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeCCceeeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecccc
Confidence 44444445556667776 999999999999999999986554
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-17 Score=149.35 Aligned_cols=278 Identities=12% Similarity=0.144 Sum_probs=184.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEE--eecCC-C
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST-K 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~-~ 160 (630)
.+.++++..+|.|++||..+++.+..+ .+|...+..+.|.. .+..+++|+.||+|++||+++...... +..+. .
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 467899999999999999998887555 57888899999976 456699999999999999998754443 44444 4
Q ss_pred CeEEEEEccCCCEEEEeC------CeEEEEECCCCce-eeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 GISCMAVSSDGKMLATAA------GQLKTFNCSDHKK-MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~-~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+..|++.+-.+.++++|. -.+.+||++..+. ++.+ ..|...|+++.|+|...-++.+|+-||.+.+||+...
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 777888777788888886 3899999998876 5544 5799999999999977655555557999999999876
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEe-------eccC---C
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-------SSED---V 302 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~---~ 302 (630)
... -.....+.+...+-.+-|.+ +.-+.|.+.+..+...+|++..+............. .+.. .
T Consensus 199 ~Ee-DaL~~viN~~sSI~~igw~~-----~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~ 272 (376)
T KOG1188|consen 199 NEE-DALLHVINHGSSIHLIGWLS-----KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE 272 (376)
T ss_pred cch-hhHHHhhcccceeeeeeeec-----CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence 422 11223344444454444544 333568888999999999998886433322221110 0000 0
Q ss_pred Ccccccchhhhhhhccc-cccccCCceeEEE-EE---cCccCceeeEEec-cCCCcEEEeecCCcceeeccccceecccc
Q 006808 303 NSKSQKSATAAIFAAKL-QDIVKPASVHTFV-AY---GLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~-~~---g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~ 376 (630)
.+|... ...+.+.. .+ .+.++. .+ ++... ....+.+ |..-|.++.|...+.++ .||++|+.+.+
T Consensus 273 ~~~~~~---~~~~l~g~~~n-----~~~~~~~~~~~s~~~~~-~~a~l~g~~~eiVR~i~~~~~~~~l-~TGGEDG~l~~ 342 (376)
T KOG1188|consen 273 HSPGDK---DTCALAGTDSN-----KGTIFPLVDTSSGSLLT-EPAILQGGHEEIVRDILFDVKNDVL-YTGGEDGLLQA 342 (376)
T ss_pred ccCCCc---ceEEEeccccC-----ceeEEEeeecccccccC-ccccccCCcHHHHHHHhhhccccee-eccCCCceEEE
Confidence 111111 01111111 11 112221 11 11111 1222334 56668888888888888 99999999999
Q ss_pred ceec
Q 006808 377 RYVQ 380 (630)
Q Consensus 377 w~~~ 380 (630)
|..+
T Consensus 343 Wk~~ 346 (376)
T KOG1188|consen 343 WKVE 346 (376)
T ss_pred EecC
Confidence 9864
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=143.32 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=176.0
Q ss_pred CcEEEEEeCC-------CeEEEEEccCCe---------eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 006808 86 SSLLVLGTGG-------GDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 86 ~~~l~~~~~~-------g~v~iwd~~~~~---------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
..+|+++..+ ..+-||.+.... ++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+
T Consensus 76 ~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~es 154 (370)
T KOG1007|consen 76 QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDES 154 (370)
T ss_pred CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccC
Confidence 4556665542 126799886432 23334335667999999999999988875 788999999877
Q ss_pred ce-eEEeec-----CCCCeEEEEEcc--CCCEEEEeC-CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEee
Q 006808 150 SL-LGKFRA-----STKGISCMAVSS--DGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 150 ~~-~~~~~~-----~~~~v~~l~~~p--~~~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.. +..+.. +....++-+|+| +|+.+++.+ +++..||+++.+....+ ..|...|..+.|+|+-+++++++.
T Consensus 155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence 55 333322 344677889998 888999888 89999999987765555 578889999999999887766666
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeec
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (630)
+||.|++||.+..+.. ++.+..+...+.++-|++ ....+|++|+.|..|.+|...+...-... ....
T Consensus 235 DdgyvriWD~R~tk~p----v~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V~Lsca~svSSE~qi-----~~~~ 301 (370)
T KOG1007|consen 235 DDGYVRIWDTRKTKFP----VQELPGHSHWVWAVRFNP----EHDQLILSGGSDSAVNLSCASSVSSEQQI-----EFED 301 (370)
T ss_pred CCccEEEEeccCCCcc----ccccCCCceEEEEEEecC----ccceEEEecCCCceeEEEecccccccccc-----cccc
Confidence 8999999999987644 455555555444454541 34688999999999999986443211100 0000
Q ss_pred cCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
...-.++.. +.. ..+ ......++++..|...|++++||.-...+.+|-|.||.+.+-++
T Consensus 302 dese~e~~d---------see-r~k-----------pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 302 DESESEDED---------SEE-RVK-----------PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccCcchh---------hHH-hcc-----------cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 000000000 000 000 11223456777999999999999999988789999999887655
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=151.08 Aligned_cols=206 Identities=14% Similarity=0.101 Sum_probs=155.3
Q ss_pred CCCCCEEEEEEecCCC--EEEEEeCCCcEEEEeCCC----------------CceeEEeecCCCCeEEEEEccCC-CEEE
Q 006808 115 CHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLT----------------GSLLGKFRASTKGISCMAVSSDG-KMLA 175 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~l~~~p~~-~~l~ 175 (630)
+|.+.++.+.-++-|+ +.++-+..|.|++||+.. .+++.++.+|...=+.++|+|-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 5777788777777554 455567899999999852 35788889999888999999932 2466
Q ss_pred EeC--CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceee
Q 006808 176 TAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (630)
Q Consensus 176 ~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (630)
+|. +.|++|...+|.- ...|.+|+..|-.++|||....++++|+-|++|+|||++.+... .|+..-.|.. -+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--~~~~~kAh~s-DV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--AAVSTKAHNS-DV 305 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--ceeEeeccCC-ce
Confidence 766 8999999988753 23467899999999999987766666667999999999998644 2555544555 56
Q ss_pred eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeE
Q 006808 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 330 (630)
.++.|+ ..-.+|++|+.||+++|||+++.+. .
T Consensus 306 NVISWn-----r~~~lLasG~DdGt~~iwDLR~~~~------~------------------------------------- 337 (440)
T KOG0302|consen 306 NVISWN-----RREPLLASGGDDGTLSIWDLRQFKS------G------------------------------------- 337 (440)
T ss_pred eeEEcc-----CCcceeeecCCCceEEEEEhhhccC------C-------------------------------------
Confidence 667676 5556999999999999999854432 0
Q ss_pred EEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
..+..++.|..+|+++.|+|...-..+.++.|..+.+|++.
T Consensus 338 ---------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 338 ---------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ---------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 11225568999999999999755333667779999999983
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=160.68 Aligned_cols=260 Identities=11% Similarity=0.093 Sum_probs=179.1
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 175 (630)
..+.+||+..|..+.++ ++|...|.+++|+.+|+.|++|+.|..|.+|.-+-. -+-.+ .|...|.|+.|+|-...|+
T Consensus 33 ~rlliyD~ndG~llqtL-KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkY-SH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKY-SHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred CEEEEEeCCCccccccc-ccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeee-ccCCeeeEeecCchHHHhh
Confidence 34667777766666444 589999999999999999999999999999985421 12222 3888999999999999999
Q ss_pred EeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEE
Q 006808 176 TAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254 (630)
Q Consensus 176 ~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (630)
+++ ...-+|........ ..+ ....+.+++|..||++|+.+- .+|+|.+-+-...... .+...+.+...+..++
T Consensus 110 sCsLsdFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~-~nGTIsiRNk~gEek~---~I~Rpgg~Nspiwsi~ 183 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGM-FNGTISIRNKNGEEKV---KIERPGGSNSPIWSIC 183 (1081)
T ss_pred hcchhhccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEec-cCceEEeecCCCCcce---EEeCCCCCCCCceEEE
Confidence 999 88889987554332 221 245788999999999999876 6999998865443322 3444344555555555
Q ss_pred ecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEE
Q 006808 255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY 334 (630)
Q Consensus 255 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 334 (630)
|++..--.....+++.....++.+|.+ +|+.+...+.......|.. +-+.+. +++.|+.++...++. -.
T Consensus 184 ~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Cis-Yf~NGE----y~LiGGsdk~L~~fT-----R~ 252 (1081)
T KOG1538|consen 184 WNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCIS-YFTNGE----YILLGGSDKQLSLFT-----RD 252 (1081)
T ss_pred ecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhhe-eccCCc----EEEEccCCCceEEEe-----ec
Confidence 552211112356788888889998876 5655554333333333322 455666 899999887544432 22
Q ss_pred cCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 335 GLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 335 g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|. .+.++......|+.++..|++++. +.|..||++..+++.
T Consensus 253 Gv----rLGTvg~~D~WIWtV~~~PNsQ~v-~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 253 GV----RLGTVGEQDSWIWTVQAKPNSQYV-VVGCQDGTIACYNLI 293 (1081)
T ss_pred Ce----EEeeccccceeEEEEEEccCCceE-EEEEccCeeehhhhH
Confidence 22 222333455679999999999999 889999999888764
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=147.17 Aligned_cols=207 Identities=16% Similarity=0.226 Sum_probs=161.4
Q ss_pred cccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeee------EEccCCCCCCEEEEEEecCC-CEE
Q 006808 60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFATHG-SCI 132 (630)
Q Consensus 60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~------~~~~~~h~~~v~~~~~s~~g-~~l 132 (630)
.+||.. .+..+.|+|++ ...|++|+.|.+|.||++..+... ...+.+|...|--+.|+|.. +.|
T Consensus 77 v~GHt~-~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 77 VCGHTA-PVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCccc-cccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 457754 67789999997 788999999999999999765432 23346899999999999954 568
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCC-CeEEEEEee
Q 006808 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSD 209 (630)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp 209 (630)
++++.|.+|.+|++.+|+.+-++. |..-|+++.|+.+|.++++++ ..|+|||.++++.+..-.+|.+ .-..+.|-.
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999999988888 999999999999999999998 7999999999999988888875 355677888
Q ss_pred CCcEEEEEee---CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcc
Q 006808 210 NGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (630)
Q Consensus 210 ~~~~l~~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~ 285 (630)
+|. ++++|. .++.+-+||...-... .....+...+. +-.-++. +|...|..++ .|+.|+.|.+.+-.
T Consensus 227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtSnG-vl~PFyD-----~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 227 SGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELDTSNG-VLLPFYD-----PDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCc-eeeeccccccccceeccCcccccCc--ceeEEeccCCc-eEEeeec-----CCCCEEEEEecCCcceEEEEecCCC
Confidence 888 566552 3678999998775533 12333333332 2333443 7878776655 49999999986554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-16 Score=141.03 Aligned_cols=242 Identities=14% Similarity=0.198 Sum_probs=170.1
Q ss_pred cccceeEeEECCCC-----CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 4 SNIRDILTSFSPAL-----DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 4 ~~V~~~~~~fs~dg-----~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
-|++.+ .|.|+. ++||+++ ..+|+|.+.......... ..++.. ...+.....|.+.|+..+
T Consensus 97 YP~tK~--~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~--------~~L~~~-kns~~~aPlTSFDWne~d- 162 (364)
T KOG0290|consen 97 YPVTKL--MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ--------SVLNNN-KNSEFCAPLTSFDWNEVD- 162 (364)
T ss_pred CCccce--EecCCccccCcchhhccc--CeEEEEeccCcCCceehh--------hhhccC-cccccCCcccccccccCC-
Confidence 367455 899976 4777776 479999987322111111 011111 124446688999999988
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
.++|.+++-|-+..|||+.++.. +.+.+.+|...|.+++|...+. .|+++|.||.|++||++...-...+
T Consensus 163 -------p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 163 -------PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred -------cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 56899999999999999999743 4455568999999999998553 5899999999999999876433222
Q ss_pred -ec--CCCCeEEEEEcc-CCCEEEEeC---CeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEE
Q 006808 156 -RA--STKGISCMAVSS-DGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIAL 226 (630)
Q Consensus 156 -~~--~~~~v~~l~~~p-~~~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~v 226 (630)
.. ...+...++|++ |-+++|+-. ..|.+.|++.. .++..+.+|.+.|++++|.|.. ..++++| +|...-+
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qali 314 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALI 314 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEE
Confidence 22 245888999998 455666644 78999999875 4788899999999999999965 4666666 7999999
Q ss_pred EEcCCCcc-ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 227 WRTDGVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 227 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
||+...-. .....++.......+....|.+ ..+.+|+.+..
T Consensus 315 WDl~q~~~~~~~dPilay~a~~EVNqi~Ws~-----~~~Dwiai~~~ 356 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYTAGGEVNQIQWSS-----SQPDWIAICFG 356 (364)
T ss_pred EecccccccCCCCchhhhhccceeeeeeecc-----cCCCEEEEEec
Confidence 99987543 1122233333445555555554 45677777655
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.5e-16 Score=158.15 Aligned_cols=250 Identities=12% Similarity=0.130 Sum_probs=177.5
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEE--EEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| +|++|+| +..++|.|+.+|.|.+||+..+... ..+..+ .......++.+.|.....
T Consensus 242 ~s~v--~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~--------------~~sh~~~v~~vvW~~~~~- 304 (555)
T KOG1587|consen 242 PSEV--TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL--------------EVSHSEPVTAVVWLQNEH- 304 (555)
T ss_pred CCce--eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc--------------cccCCcCeEEEEEeccCC-
Confidence 4567 7779999 5578888889999999999877652 211111 122245777888876432
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEc-----cC------CCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-----SD------CHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~-----~~------~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~ 147 (630)
+.-+++++.||.|+.|+++.-...... .. .-...+++++|.+ +-..|+.|+..|.|.--+-.
T Consensus 305 ------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 305 ------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred ------CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 345888999999999988643321100 00 1224689999988 45569999999988774432
Q ss_pred CC--------ceeEEeecCCCCeEEEEEccCCC-EEEEeC-CeEEEEECC-CCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 148 TG--------SLLGKFRASTKGISCMAVSSDGK-MLATAA-GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 148 ~~--------~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~-g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
.. +....+..|.++|+++.++|-+. .+++++ .+++||... ...++..+..+...+++++|||....+++
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 21 22335667888999999999654 444444 799999987 66677777778888999999998877766
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+...||.|.+||+...... .+..............++ +.|..|++|...|.+++|++..
T Consensus 459 ~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWS-----PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EEcCCCceehhhhhccccC---CcccccccccccceeecC-----CCCcEEEEecCCCcEEEEEcCc
Confidence 6667999999999876644 222222225556666665 7899999999999999999853
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=144.56 Aligned_cols=189 Identities=13% Similarity=0.208 Sum_probs=143.2
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (630)
+.+|++...|.|++||..+|+.+..|+++....+.+.|... +. ...+.+|+.||.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~------------------ds-------~h~v~s~ssDG~ 95 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISC------------------DS-------PHGVISCSSDGT 95 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecC------------------CC-------CCeeEEeccCCe
Confidence 46888888999999999999999999988777665555432 10 567899999999
Q ss_pred EEEEEccCCeeeEEcc-CCCC-CCEEEEEEecCCCEEEEEe----CCCcEEEEeCCCCce-eEE-eecCCCCeEEEEEcc
Q 006808 98 VLALAVSAGQLKWRLS-DCHP-GGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSL-LGK-FRASTKGISCMAVSS 169 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~-~~h~-~~v~~~~~s~~g~~l~s~~----~dg~v~iwd~~~~~~-~~~-~~~~~~~v~~l~~~p 169 (630)
|++||++......++. .+|+ .+..+++.+..++.+++|. .+-.|.+||++..+. ++. +..|...|++++|+|
T Consensus 96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9999999876544433 3344 4667777777777777775 466899999998766 554 456888999999999
Q ss_pred -CCCEEEEeC--CeEEEEECCCCc----eeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCc
Q 006808 170 -DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 170 -~~~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+..+|++|+ |-|.+||+.... ++.++ .|...|.++.|..++ +.+.+-+ ......+|++..+.
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGS 245 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCC
Confidence 567888998 999999987542 23333 367779999998877 3344444 57889999987654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-16 Score=153.82 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=178.3
Q ss_pred EccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCC--EEEEeC-CeEEEEECC
Q 006808 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK--MLATAA-GQLKTFNCS 187 (630)
Q Consensus 111 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~--~l~~~~-g~i~lwd~~ 187 (630)
.++.+|++.|.++...|.|.+|++|+.||+|++|.+.+|+|++++. ..+.|.|++|+|.+. .||++. +.+.+.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 4457999999999999999999999999999999999999999988 456899999999654 444444 334443321
Q ss_pred CC-------------------------------------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeC--CCeEEEEE
Q 006808 188 DH-------------------------------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWR 228 (630)
Q Consensus 188 ~~-------------------------------------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~--d~~i~vwd 228 (630)
-| .-++..-.|...|+.+.|+..|.||++.... ...|.|.+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 11 0012333477889999999999999997632 24788999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
+.....+ + .+......+..+.|. |...+|++++. ..|+|||+.....++...+...-+.+ +...+.+.
T Consensus 553 LSK~~sQ---~--PF~kskG~vq~v~FH-----Ps~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~-msihp~GD 620 (733)
T KOG0650|consen 553 LSKRKSQ---S--PFRKSKGLVQRVKFH-----PSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISS-MSIHPNGD 620 (733)
T ss_pred ccccccc---C--chhhcCCceeEEEec-----CCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeee-eeecCCCC
Confidence 8877643 2 232333445556666 88888888887 68999999887776665554433332 22455555
Q ss_pred chhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 309 ~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.|+.++. +.+++..+-......++++..|...+.+++|++.=.++ +|||.|+++.+..
T Consensus 621 ----nli~gs~-------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf-as~sdDgtv~Vfh 678 (733)
T KOG0650|consen 621 ----NLILGSY-------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF-ASGSDDGTVIVFH 678 (733)
T ss_pred ----eEEEecC-------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee-eeecCCCcEEEEe
Confidence 6777776 44555555556667788999999999999999998888 9999999998764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-14 Score=148.31 Aligned_cols=322 Identities=20% Similarity=0.287 Sum_probs=214.2
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEecccccccccccccccccccccccceeeEEe-cccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-LSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w-~~~~~~~~ 81 (630)
..| .++.|.+.+..++.++.|+.+.+|+...+. ....+..... ..+..+.+ .+.
T Consensus 66 ~~i--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~----- 121 (466)
T COG2319 66 DSI--TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----------------SSVSKLALSSPD----- 121 (466)
T ss_pred ceE--EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----------------CceeeEEEECCC-----
Confidence 456 556999999999999999999999998876 5555543221 11222222 111
Q ss_pred cccCCc-EEEEEeC-CCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeec
Q 006808 82 RKLGSS-LLVLGTG-GGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 82 ~~~~~~-~l~~~~~-~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~~~~ 157 (630)
.. .++..+. ++.+.+|+... ......+ ..|...|.+++|+|++..+++++. |+.+++|++..+..+..+..
T Consensus 122 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 122 ----GNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred ----cceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 22 3444344 88999999998 4444333 479999999999999998888885 99999999999889999999
Q ss_pred CCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|...|.+++|+|++. .+++++ +.|++||...+..+. .+.+|.... -..|+|++.++++++ .|+.+++|++....
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~ 274 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSS 274 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCC
Confidence 999999999999998 555534 899999998888777 688888775 448999997777666 79999999998766
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC--ceeEEeeccCCCcccccchh
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 311 (630)
.. .... ..| ...+....+. |++..+++++.|+.+.+|+..+........ .....+.... +.+...
T Consensus 275 ~~--~~~~-~~~-~~~v~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 341 (466)
T COG2319 275 SL--LRTL-SGH-SSSVLSVAFS-----PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGS--- 341 (466)
T ss_pred cE--EEEE-ecC-CccEEEEEEC-----CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE-ECCCCC---
Confidence 41 1122 234 4444455665 778888889889999999887765443332 1111111111 111101
Q ss_pred hhhhhc-cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeecc-ccceeccccceecc
Q 006808 312 AAIFAA-KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS-QSLLKSKRGRYVQN 381 (630)
Q Consensus 312 ~~i~~~-~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s-~s~d~~~~~w~~~~ 381 (630)
.+..+ ..++ .+.. +.......+.....+. .+..+.+++ .... .+ ++.++.+++|+...
T Consensus 342 -~~~~~~~~d~-------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 401 (466)
T COG2319 342 -LLVSGGSDDG-------TIRL-WDLRTGKPLKTLEGHS-NVLSVSFSP-DGRV-VSSGSTDGTVRLWDLST 401 (466)
T ss_pred -EEEEeecCCC-------cEEe-eecCCCceeEEecCCc-eEEEEEECC-CCCE-EEEecCCCceEEEeccc
Confidence 23333 2322 2222 2211111122221222 278888888 5333 44 67889999998753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-14 Score=148.69 Aligned_cols=319 Identities=21% Similarity=0.322 Sum_probs=213.9
Q ss_pred ccceeEeEECCCCC-EEEEeeC-CCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 5 NIRDILTSFSPALD-YFAICSG-DARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 5 ~V~~~~~~fs~dg~-~las~s~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+..+... ++++. +++.++. |+.+.+|+... ......+..|...+..+.|++.
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 166 (466)
T COG2319 111 SVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD----------------------- 166 (466)
T ss_pred ceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-----------------------
Confidence 45445444 88888 5555455 99999999987 6777777766655554444443
Q ss_pred cccCCcEEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeE-EeecC
Q 006808 82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLG-KFRAS 158 (630)
Q Consensus 82 ~~~~~~~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~ 158 (630)
+..+++++. ++.+++|++..+..+..+ .+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|
T Consensus 167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~ 241 (466)
T COG2319 167 ----GKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241 (466)
T ss_pred ----CCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence 456777775 999999999987776555 45999999999999998 55555899999999998888887 68877
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce-eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.... ...|+|++.++++++ +.+++|++..... +..+.+|...+.++.|+|++..+++++ .|+.+.+|+.......
T Consensus 242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLL 319 (466)
T ss_pred Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CCCcEEEEEcCCCceE
Confidence 7765 448999997877766 8999999987664 444567889999999999888888866 5788999988876543
Q ss_pred cceeeee-ecCCceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCcccccccCcee--EEeeccCCCcccccchh
Q 006808 236 SASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATK--ILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 311 (630)
.... ..+...+....+ . +++..++.+ ..|+.+.+|+.............. ..+. +.+ ..
T Consensus 320 ---~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~--- 382 (466)
T COG2319 320 ---SSLTLKGHEGPVSSLSF-S-----PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS----FSP-DG--- 382 (466)
T ss_pred ---EEeeecccCCceEEEEE-C-----CCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEE----ECC-CC---
Confidence 1111 234332333333 4 444555555 678999999987776222211111 1111 111 11
Q ss_pred hhhhh-ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 312 AAIFA-AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 312 ~~i~~-~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+.. +..++.+..++ ............+...+....+++++.++ ++++.+..++.|+...
T Consensus 383 -~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 383 -RVVSSGSTDGTVRLWD--------LSTGSLLRNLDGHTSRVTSLDFSPDGKSL-ASGSSDNTIRLWDLKT 443 (466)
T ss_pred -CEEEEecCCCceEEEe--------cccCeeeeeccCCCCcEEEEEECCCCcEE-EEecCCCcEEEEeccC
Confidence 1221 23333222221 11111111121222688999999999998 7788899999998753
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.1e-15 Score=129.71 Aligned_cols=226 Identities=13% Similarity=0.218 Sum_probs=157.5
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCc----------EEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
+.-+++|.+++|+.|+.+|+|.++.+.+-. .+-.+++|.+++. .+++.
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy------------------~~~f~---- 71 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIY------------------YLAFH---- 71 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCee------------------eeeee----
Confidence 344899999999999999999999876421 1122233333332 33332
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCee------eEEcc-CCCC-----CCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLS-DCHP-----GGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~------~~~~~-~~h~-----~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.. ++..++||.|+-|..+.-.. .+... ..|. ..|+++-..|..+.++.++.|+.++.||+
T Consensus 72 -------d~-~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl 143 (325)
T KOG0649|consen 72 -------DD-FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL 143 (325)
T ss_pred -------hh-heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence 12 34555669999887653211 11111 1122 35899999998888888889999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec---------C-CCCeEEEEEeeCCcEE
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---------H-PGAVRFMTFSDNGKYV 214 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~---------h-~~~v~~l~~sp~~~~l 214 (630)
++|+..+++++|...|.++.-......+++|+ |++++||.++++.+..+.. | ...|.+++- +..++
T Consensus 144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWl 221 (325)
T KOG0649|consen 144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWL 221 (325)
T ss_pred cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceE
Confidence 99999999999999999999866666788887 9999999999998877632 1 224555554 45677
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+.++ ...+.+|+++..+.. +++.+..+...+ . | ....+++++..+.+.-|.+
T Consensus 222 vCGg--Gp~lslwhLrsse~t---~vfpipa~v~~v--~-F-------~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 222 VCGG--GPKLSLWHLRSSEST---CVFPIPARVHLV--D-F-------VDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EecC--CCceeEEeccCCCce---EEEecccceeEe--e-e-------ecceEEEeccccceeeeee
Confidence 6654 668999999998744 666665544332 2 2 2467888888778888876
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=145.11 Aligned_cols=186 Identities=17% Similarity=0.245 Sum_probs=123.2
Q ss_pred CcEEEEEe-CCCeEEEEEcc-CCee--eEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCC-Cc---eeEEee
Q 006808 86 SSLLVLGT-GGGDVLALAVS-AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLT-GS---LLGKFR 156 (630)
Q Consensus 86 ~~~l~~~~-~~g~v~iwd~~-~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~-~~---~~~~~~ 156 (630)
+++|++++ .++.|.+|++. ++.. .... ...+....++|+|+|+++++++. ++.|.+|++.+ +. .+..+.
T Consensus 46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 46 KRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence 66676665 46779999997 3332 2222 23345678999999999888764 88999999864 32 223332
Q ss_pred cCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceee-------EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~-------~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
+.....+++++|+++++++++ +.|.+||+.+...+. ... .......+.|+|+|++++++...++.|.+
T Consensus 124 -~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v 201 (330)
T PRK11028 124 -GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDV 201 (330)
T ss_pred -CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence 223467889999999987766 799999997633221 111 12345789999999999888756899999
Q ss_pred EEcCCC--ccccceeeeeec---C---CceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCC
Q 006808 227 WRTDGV--KKQSASCVLAME---H---PAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (630)
Q Consensus 227 wd~~~~--~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~ 283 (630)
|++... ... .+.... . .......+.++ |++++++++.. ++.|.+|++..
T Consensus 202 ~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~i~~~-----pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 202 WQLKDPHGEIE---CVQTLDMMPADFSDTRWAADIHIT-----PDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEEeCCCCCEE---EEEEEecCCCcCCCCccceeEEEC-----CCCCEEEEecCCCCeEEEEEEeC
Confidence 999742 211 111111 1 01111224455 99999999865 78999999854
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.7e-17 Score=157.55 Aligned_cols=254 Identities=16% Similarity=0.172 Sum_probs=171.8
Q ss_pred CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--------CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEE
Q 006808 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKT 183 (630)
Q Consensus 114 ~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~l 183 (630)
..|...|+.+.|+|....|++|+.||++++|+++. -+++.+|++|.++|.|+++.+++..+++|+ |+|+.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 45888999999999999999999999999999932 257889999999999999999999999999 99999
Q ss_pred EECCCC----------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeE
Q 006808 184 FNCSDH----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 184 wd~~~~----------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (630)
|++... .....+.||...|+.+++|+...+|++++ .||+++.|......+ |++..........++
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-SDGTVRLWEPTEESP----CTFGEPKEHGYPLSV 445 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec-CCceEEeeccCCcCc----cccCCccccCCcceE
Confidence 966421 12346789999999999999988898888 599999999877654 333332222222233
Q ss_pred EecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee---EEeeccCCCcccccchhhhhhhccccccccCCceeE
Q 006808 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK---ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 330 (630)
.+.. ..-.+.++...-|.-.+++...+..+....... ........+.- ++...+..+++..++.++.++
T Consensus 446 d~~s----s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV-s~~~~~~~~~~hed~~Ir~~d--- 517 (577)
T KOG0642|consen 446 DRTS----SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV-SHPTADITFTAHEDRSIRFFD--- 517 (577)
T ss_pred eecc----chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE-ecCCCCeeEecccCCceeccc---
Confidence 3320 111233333333444444544444333222111 00000000000 001113567777777776654
Q ss_pred EEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccceeec
Q 006808 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTAL 386 (630)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~ 386 (630)
+.....+..+..|...+.++++-|+|.+| ++|++|+++++|.+..+.-++
T Consensus 518 -----n~~~~~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 518 -----NKTGKILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred -----ccccccchheeeccceecceeecCCCceE-EeecCCceeehhhccchheee
Confidence 33344444566899999999999999999 999999999999986544333
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=154.05 Aligned_cols=242 Identities=14% Similarity=0.141 Sum_probs=174.0
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCC--------CcEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK--------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.||++ +|.|....|++|+.||+|++|+++. -+.+.+|.+|.+++.++++...
T Consensus 296 ~ir~l--~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n------------------ 355 (577)
T KOG0642|consen 296 CIRAL--AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN------------------ 355 (577)
T ss_pred hhhhh--hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC------------------
Confidence 46666 8999999999999999999999932 2457788888777776666555
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCC---------eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~---------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+..+++|+.||+|+.|++..+ ..+...+.||...|+.+++|+....|++|+.||+++.|+..
T Consensus 356 ---------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 356 ---------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ---------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 778999999999999966422 12334456999999999999988899999999999999987
Q ss_pred CCceeEEeecCC--CCeEEEEEccCCCEEEEeCCeE---EEEECCCCceeeEeecC-------CCCeEEEEEeeCCcEEE
Q 006808 148 TGSLLGKFRAST--KGISCMAVSSDGKMLATAAGQL---KTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 148 ~~~~~~~~~~~~--~~v~~l~~~p~~~~l~~~~g~i---~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l~ 215 (630)
...+ .+|.... +...++.+......+..++... -+++......+..+... ...+..+.++|.+...+
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 6555 4444322 2335566544332333333333 33444444444444321 13467788999998888
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
++. .|+.|+++|..++... .....+...+++.++. |+|.+|++++.||.+++|.+......
T Consensus 506 ~~h-ed~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~-----~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 506 TAH-EDRSIRFFDNKTGKIL-----HSMVAHKDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecc-cCCceecccccccccc-----hheeeccceecceeec-----CCCceEEeecCCceeehhhccchhee
Confidence 776 7999999999988743 3333445556677776 99999999999999999998655443
|
|
| >PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-17 Score=132.87 Aligned_cols=99 Identities=34% Similarity=0.469 Sum_probs=95.4
Q ss_pred ccccCChhHHHHHHhccChhhHHHHHHHHHHHHh-cCCCCcchHHHHHHHHHHHhcccccCC-CChhHHHHHHHHHHHHH
Q 006808 485 FETNIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQ-ESLTPMLSSLYKITVSR 562 (630)
Q Consensus 485 ~~~~~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~-~~~~~~~~~~~wl~~ll~~h~~~l~~~-~~l~~~l~~L~~~~~~~ 562 (630)
|++.+|.+.|++|+++||+.|+.+||++++.+++ +++.+.+++++|+++||..|+++|++. |++.+.|..|++.+++|
T Consensus 9 vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~ 88 (110)
T PF04003_consen 9 VLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRER 88 (110)
T ss_pred HHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999888 788999999999999999999999999 99999999999999999
Q ss_pred HHhhHhHHhcc-chHHHHHHHH
Q 006808 563 EAAFQSLLRLS-GRLQLTMAQI 583 (630)
Q Consensus 563 ~~~~~~l~~l~-g~l~~~~~~~ 583 (630)
.+.++++++++ |+|+++.+|+
T Consensus 89 ~~~l~~l~~~n~~~L~~l~~q~ 110 (110)
T PF04003_consen 89 LQNLSKLLDLNLGRLDYLLSQI 110 (110)
T ss_pred HHHHHHHHHHhHHHHHHHHHhC
Confidence 99999999999 9999999985
|
This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation. |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=159.61 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=180.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+| .|+.|...|.++++|+.|..++||...++.++....||.+.++....+..
T Consensus 191 naV--yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~------------------------- 243 (1113)
T KOG0644|consen 191 NAV--YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN------------------------- 243 (1113)
T ss_pred hhe--eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-------------------------
Confidence 356 67799999999999999999999999999999999998887776555543
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-C-------------
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-G------------- 149 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~------------- 149 (630)
+.++++++.|..|++|.+..+..+ .++.+|++.|++++|+|-. +.+.||++++||.+- .
T Consensus 244 --n~~iaaaS~D~vIrvWrl~~~~pv-svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~ 316 (1113)
T KOG0644|consen 244 --NTMIAAASNDKVIRVWRLPDGAPV-SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK 316 (1113)
T ss_pred --hhhhhhcccCceEEEEecCCCchH-HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccc
Confidence 667889999999999999999988 5556999999999999954 778999999999861 0
Q ss_pred ceeEEee----------------cCCCCeEEEEEccCCCEEEEeC-------------CeEEEEECCCCceeeEeecCCC
Q 006808 150 SLLGKFR----------------ASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPG 200 (630)
Q Consensus 150 ~~~~~~~----------------~~~~~v~~l~~~p~~~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~ 200 (630)
..+..+. ......-+++|....-.+++.+ ..+.+|++.+|.....+.+|..
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd 396 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD 396 (1113)
T ss_pred cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence 0000000 0001122233333222222222 3577899999998888899999
Q ss_pred CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 201 ~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
.+..+.++|-+..++.+...||...|||+..+.+. ..+..+ +...+.+ .| +++|..++....-|.++|+.
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~y~~g-h~kl~d~-kF-----Sqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KHYFIG-HGKLVDG-KF-----SQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---eeeecc-cceeecc-cc-----CCCCceEecCCCCCceEEec
Confidence 99999999987776665558999999999998765 344444 2333332 33 38999999988899999998
Q ss_pred cCCcccccccCc
Q 006808 281 GQNIEELRNTKA 292 (630)
Q Consensus 281 ~~~~~~~~~~~~ 292 (630)
...++.....+.
T Consensus 467 ~gqs~s~k~ak~ 478 (1113)
T KOG0644|consen 467 TGQSKSQKKAKY 478 (1113)
T ss_pred cCCCcccccccc
Confidence 766655544443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-15 Score=156.39 Aligned_cols=340 Identities=13% Similarity=0.090 Sum_probs=195.2
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccc-cccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
++.|..+ +.++ ++.+|++||.||+|+||++..-. ++. ..-..+.|++. +..+.++..+..
T Consensus 1048 s~~v~k~--a~s~~~~s~FvsgS~DGtVKvW~~~k~~------~~~~s~rS~ltys~~------~sr~~~vt~~~~---- 1109 (1431)
T KOG1240|consen 1048 SSAVIKL--AVSSEHTSLFVSGSDDGTVKVWNLRKLE------GEGGSARSELTYSPE------GSRVEKVTMCGN---- 1109 (1431)
T ss_pred cccccce--eecCCCCceEEEecCCceEEEeeehhhh------cCcceeeeeEEEecc------CCceEEEEeccC----
Confidence 4455333 5555 56999999999999999975321 111 11112333332 233444444433
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeee------EEccCCC-CCCE-EEEEEec-CCC-EEEEEeCCCcEEEEeCCCCc
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCH-PGGV-SAISFAT-HGS-CIYSAGADGMVCEIDPLTGS 150 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~------~~~~~~h-~~~v-~~~~~s~-~g~-~l~s~~~dg~v~iwd~~~~~ 150 (630)
++.+++++.||.|.+.++...... .+....+ .+.+ ..-+|.. .+. .++.+...+.|..||+++..
T Consensus 1110 -----~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1110 -----GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred -----CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 778999999999999998762211 1111122 2333 3334433 333 67788888999999998776
Q ss_pred eeEEee--cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeC---CcEEEEEee-CC
Q 006808 151 LLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDN---GKYVLSSAV-GE 221 (630)
Q Consensus 151 ~~~~~~--~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~---~~~l~~~~~-~d 221 (630)
....++ ...+.|++++.+|.+.++++|. |.+.+||++=+.++..+. ++..+++.+..+|- ....+++++ ..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 555433 3456899999999999999998 999999999888777763 34568888877663 346666665 57
Q ss_pred CeEEEEEcCCCccccceeeeeec-----------C-----Cc-eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 222 RYIALWRTDGVKKQSASCVLAME-----------H-----PA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~-----------~-----~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+.|.+|++.++... .++-.. . +. ......++. ..+.++++|+.|+.|+.||....
T Consensus 1265 nevs~wn~~~g~~~---~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQ---TVLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred CceeeeecccCcce---EEEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCCc
Confidence 78999999988543 111111 0 00 111122222 34678999999999999998665
Q ss_pred ccccccCceeEEeeccCCCcccccchhhhhhhcccc--ccccC----CceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ--DIVKP----ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d--~~~~~----~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
.... ......... ++.........++.++.- ..+.. ..-.............-..-..|...|.++++-
T Consensus 1337 ~~ss-~~~~~~s~~----~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~ 1411 (1431)
T KOG1240|consen 1337 EISS-YAVPGPSTS----YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATL 1411 (1431)
T ss_pred cccc-ccccCcccc----ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhh
Confidence 4431 111110000 000000000011111110 00000 000000000000011111223689999999988
Q ss_pred CCcceeeccccceeccccce
Q 006808 359 QDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~ 378 (630)
....-|.++++.||.+++|.
T Consensus 1412 ~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1412 KSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCccEEEEecCCCeeeecC
Confidence 76654449999999999994
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-16 Score=152.06 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=168.4
Q ss_pred ECCCCCEEEE--eeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 13 FSPALDYFAI--CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 13 fs~dg~~las--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
|..+..++|. .+.-|.|.||++.....+- .+.. +. ......++.+.|.|++ ...|+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLP-----Dgv~------p~---l~Ngt~vtDl~WdPFD--------~~rLA 644 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLP-----DGVM------PG---LFNGTLVTDLHWDPFD--------DERLA 644 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCC-----cccc------cc---cccCceeeecccCCCC--------hHHee
Confidence 4455555553 3446899999986533221 0000 00 1224578999999998 55699
Q ss_pred EEeCCCeEEEEEccCCee------eEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 91 LGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~------~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+++.+|.|++|.+..+.. ....+.+|...|+++.|+| -...|++++.|.+|++||+.+++....+.+|.+.|.
T Consensus 645 Va~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 645 VATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIF 724 (1012)
T ss_pred ecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCcee
Confidence 999999999999976532 2234457999999999999 456799999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEeecCC-CCeEEEEEeeCCcEEEEEeeC---CCeEEEEEcCCCcccc
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHP-GAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVKKQS 236 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~-~~v~~l~~sp~~~~l~~~~~~---d~~i~vwd~~~~~~~~ 236 (630)
.++|+|+|+.+++.+ |+|++|..+++. .+..-++.. ..--.|.|.-+|+++++.|.+ .+.|.+|+..+-....
T Consensus 725 ~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred EEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc
Confidence 999999999999988 999999998765 344333322 234568899999999998842 2468888876643220
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcC
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~ 282 (630)
.....+...... -+-.+ .+|. ..+++|-.|..|++|.+-
T Consensus 805 -l~t~~lDvaps~-LvP~Y-----D~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 805 -LYTQVLDVAPSP-LVPHY-----DYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred -ceeeeecccCcc-ccccc-----cCCCceEEEecCCCceEEEEEec
Confidence 011122111111 11111 2444 456777779999999863
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=150.59 Aligned_cols=287 Identities=14% Similarity=0.155 Sum_probs=195.3
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.|+|=...++++...-.|+|||++.++++..|..+... ...++.+....... ..++++
T Consensus 1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---------------~t~Vs~l~liNe~D-------~aLlLt 1128 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---------------DTRVSDLELINEQD-------DALLLT 1128 (1387)
T ss_pred eecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---------------CCccceeeeecccc-------hhheee
Confidence 89998888999887779999999999998777643321 22444555544332 678999
Q ss_pred EeCCCeEEEEEccCC-----eeeEEc------cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-
Q 006808 92 GTGGGDVLALAVSAG-----QLKWRL------SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~-----~~~~~~------~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~- 159 (630)
|+.||.|+||+-... +.+... ..+-.+.-.-+.|.....+|+++|.-..|+|||...-+....+....
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 999999999975322 122111 11111222446777777778888888999999998877777665433
Q ss_pred CCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCc---eeeEeecCCCC--eEEEEEeeCCcE-EEEEeeCCCeEEEEEcC
Q 006808 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGA--VRFMTFSDNGKY-VLSSAVGERYIALWRTD 230 (630)
Q Consensus 160 ~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~---~~~~~~~h~~~--v~~l~~sp~~~~-l~~~~~~d~~i~vwd~~ 230 (630)
..|+++.-+- .|..+++|. |.|++||.+... .+...+.|... |..+.+.+.|-. |++++ .+|.|++||++
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLR 1287 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecc
Confidence 3666665443 468888876 999999987643 46667788876 999999987755 77776 69999999999
Q ss_pred CCccccceeeeeec-CC--ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccc
Q 006808 231 GVKKQSASCVLAME-HP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307 (630)
Q Consensus 231 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (630)
...... .+... +. +...+++... ++...+|+|+. +.|.||++ .|+++...+.... |.
T Consensus 1288 ~~~~e~---~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~-------F~--- 1347 (1387)
T KOG1517|consen 1288 MSSKET---FLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPG-------FM--- 1347 (1387)
T ss_pred cCcccc---cceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEec-ChhhhcccccCcc-------cc---
Confidence 853221 11111 11 2234555555 77888999988 99999997 4555444431100 00
Q ss_pred cchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+ ...+.+.|++|+|--.+| +.|+.|..+.++.-.
T Consensus 1348 ---------~-----------------------------q~~gs~scL~FHP~~~ll-AaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1348 ---------G-----------------------------QRIGSVSCLAFHPHRLLL-AAGSADSTVSIYSCE 1381 (1387)
T ss_pred ---------c-----------------------------CcCCCcceeeecchhHhh-hhccCCceEEEeecC
Confidence 0 122356899999999999 888999988877553
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=145.66 Aligned_cols=176 Identities=16% Similarity=0.307 Sum_probs=139.9
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+...+++++.||.+.+.+-. ++.. +...+|.+.|.+-.|+|+|.-|++++.||.|++|. ++|-...++.....+|+|
T Consensus 74 ~~d~~~i~s~DGkf~il~k~-~rVE-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNKS-ARVE-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC 150 (737)
T ss_pred CcceEEEEcCCceEEEeccc-chhh-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence 36789999999999887643 3332 33458999999999999999999999999999998 667665566656779999
Q ss_pred EEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 165 MAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 165 l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
++|.|+..-++.+. +.+.+=.+.....+-..+.|.+-|.++.|+|.+..++++| .|-..++||..... .+..
T Consensus 151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~~------Lf~S 223 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGAN------LFTS 223 (737)
T ss_pred EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCcc------cccC
Confidence 99999877666555 8888888877777778899999999999999999999988 79999999977653 4455
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEE
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~ 277 (630)
..+...++.+.|. |+ ..++.++. ..++
T Consensus 224 ~~~ey~ITSva~n-----pd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 224 AAEEYAITSVAFN-----PE-KDYLLWSY-NTAR 250 (737)
T ss_pred Chhccceeeeeec-----cc-cceeeeee-eeee
Confidence 5566777888887 87 55555554 3444
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-15 Score=131.72 Aligned_cols=201 Identities=13% Similarity=0.206 Sum_probs=153.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcE-EEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
-|+.|.|++..+|+-. |..|.+|++..+.. +.++....+.. .....+.-+|.|.. ..
T Consensus 127 ~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-------------~~~~ftsg~WspHH--------dg 184 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-------------MRHSFTSGAWSPHH--------DG 184 (370)
T ss_pred eeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-------------ccceecccccCCCC--------cc
Confidence 5669999999999876 78999999988766 45444322211 12234556787754 22
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCC-CceeEEeecCCCCeEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLT-GSLLGKFRASTKGISCM 165 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l 165 (630)
.-+..+.++++..||+++......+..+|...|..+.|+|+.++ |++|+.||.|++||.+. ..++..+.+|...|.++
T Consensus 185 nqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 185 NQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV 264 (370)
T ss_pred ceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence 34566778999999999998888888899999999999998765 88999999999999985 46788899999999999
Q ss_pred EEccCCC-EEEEeC--CeEEEEECCCC-----------------------------ceeeEeecCCCCeEEEEEeeCCcE
Q 006808 166 AVSSDGK-MLATAA--GQLKTFNCSDH-----------------------------KKMQKFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 166 ~~~p~~~-~l~~~~--g~i~lwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~sp~~~~ 213 (630)
.|+|... ++++++ ..|.+|...+- ..+.++..|...|.+++||.-..+
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 9999654 445555 57777754210 123466779999999999998888
Q ss_pred EEEEeeCCCeEEEEEcCC
Q 006808 214 VLSSAVGERYIALWRTDG 231 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~ 231 (630)
++++-+.||.+.|=.+..
T Consensus 345 iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccCceEEeecCCh
Confidence 887777899988866543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=143.60 Aligned_cols=194 Identities=21% Similarity=0.179 Sum_probs=151.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++|+++|..+|+|+.||++|||++.+...+.....|...+.++.|+|+ +.+|
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---------------------------gk~l 201 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---------------------------GKFL 201 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---------------------------CcEE
Confidence 4599999999999999999999999888888888888888888888887 7889
Q ss_pred EEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCC---CE--EEEEeCCCcEEEEeCCCCce-----eEEeecC
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHG---SC--IYSAGADGMVCEIDPLTGSL-----LGKFRAS 158 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g---~~--l~s~~~dg~v~iwd~~~~~~-----~~~~~~~ 158 (630)
++-+.+ ..+||+..++..+.+.. ..-......+.|+.++ .+ ++....-+.|+.|++...+- .++....
T Consensus 202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 999888 99999999996654443 2233456778888776 23 33334556677777643221 1111222
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
...|++++++++|++++.|+ |.|-+++..+-+.+..+ ..|...|+.+.|+|+.+++++.++ +..+.+..+.-.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs-~~~~~v~~l~vd 356 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS-DNEAAVTKLAVD 356 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc-CCceeEEEEeec
Confidence 34799999999999999998 99999999888877665 478899999999999999999874 888888777653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=139.60 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=149.4
Q ss_pred EeEECCCCCEEEEee-CCCcEEEEECC-CCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICS-GDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.++|+|+|++|++++ .++.|.+|++. ++... ...... .......+.+.+. ++
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~----------------~~~~p~~i~~~~~---------g~ 92 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-FAAESP----------------LPGSPTHISTDHQ---------GR 92 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceE-Eeeeec----------------CCCCceEEEECCC---------CC
Confidence 459999999887765 48899999986 34332 111000 0001223444433 66
Q ss_pred EEEEEe-CCCeEEEEEccCCe----eeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeE-----Eee
Q 006808 88 LLVLGT-GGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-----KFR 156 (630)
Q Consensus 88 ~l~~~~-~~g~v~iwd~~~~~----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~-----~~~ 156 (630)
++++++ .++.|.+|++.+.. ....+ .+...+.+++++|+|+++++++ .++.|.+||+.+...+. ...
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 667665 47889999997432 12111 2334567889999999986655 56899999997633221 111
Q ss_pred c-CCCCeEEEEEccCCCEEEEeC---CeEEEEECCC--Cc--eeeEeecC------CCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 157 A-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HK--KMQKFSGH------PGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 157 ~-~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~--~~--~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
. .......++|+|+|+++++++ ++|.+|++.. ++ .+..+..+ ......+.|+|++++++++...++
T Consensus 171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence 1 233567899999999998876 8999999973 32 23333221 122346889999999999865678
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcC
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~ 282 (630)
.|.+|++....... ..+..... ......+.++ |+|++|++++. ++.|.+|++.
T Consensus 251 ~I~v~~i~~~~~~~-~~~~~~~~-~~~p~~~~~~-----~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 251 LISVFSVSEDGSVL-SFEGHQPT-ETQPRGFNID-----HSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEEEEeCCCCeE-EEeEEEec-cccCCceEEC-----CCCCEEEEEEccCCcEEEEEEc
Confidence 99999996543110 01111111 1112234454 99999998876 8899999864
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=133.36 Aligned_cols=226 Identities=13% Similarity=0.202 Sum_probs=160.2
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
.|+..++|+.+.+.-|++||.-+|+..+.+........ -....++.|.+. +..|+ ++
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-------------~taAhsL~Fs~D---------Geqlf-aG 176 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-------------YTAAHSLQFSPD---------GEQLF-AG 176 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHh-------------hhhheeEEecCC---------CCeEe-ec
Confidence 36778999999999999999999999887764321100 112334555554 45554 45
Q ss_pred CCCeEEEEEc-cCCeee---EEcc---CCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 94 GGGDVLALAV-SAGQLK---WRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 94 ~~g~v~iwd~-~~~~~~---~~~~---~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
....|++||+ +.|... .++. .+..+-|.+++|+|. ...++.++...++-|+.-..+.++..+-+|.+.|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 5678999999 444321 1111 234677899999994 4578999998899999888889999999999999999
Q ss_pred EEccCCCEEEEeC---CeEEEEECCCC-ceeeEeecCCC-CeEEEEE--eeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 166 AVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSGHPG-AVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 166 ~~~p~~~~l~~~~---g~i~lwd~~~~-~~~~~~~~h~~-~v~~l~~--sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
+|.++|+.|.+|. ..|..||++.. .++..+..|.. .-..|.| .|.+++|++++ .||.|++||+......
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG~V~vwdlk~~gn~--- 332 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDGSVRVWDLKDLGNE--- 332 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCccEEEEecCCCCCc---
Confidence 9999999999998 58999999874 45666766765 3345555 58899998887 6999999999884321
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
+.........+..+.++ |-=..+++++.
T Consensus 333 -~sv~~~~sd~vNgvsln-----P~mpilatssG 360 (406)
T KOG2919|consen 333 -VSVTGNYSDTVNGVSLN-----PIMPILATSSG 360 (406)
T ss_pred -ccccccccccccceecC-----cccceeeeccC
Confidence 22333344444445554 65445555443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.7e-15 Score=130.38 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=159.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-------------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL------------- 152 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~------------- 152 (630)
+.+|++|+..|.|++|++++......+...|...|+.+.--|+ ..+.+-+.|+.+.+|++.-+..+
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC 103 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC 103 (323)
T ss_pred chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccc
Confidence 4458999999999999999988775554467788999999887 46888889999999998642111
Q ss_pred -EEee---------------------------------------cCCCCeEEEEEcc-CC-CEEEEeC---CeEEEEECC
Q 006808 153 -GKFR---------------------------------------ASTKGISCMAVSS-DG-KMLATAA---GQLKTFNCS 187 (630)
Q Consensus 153 -~~~~---------------------------------------~~~~~v~~l~~~p-~~-~~l~~~~---g~i~lwd~~ 187 (630)
..+. +..+.++|..+.. .+ ..++.++ |.+.+||+.
T Consensus 104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S 183 (323)
T KOG0322|consen 104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS 183 (323)
T ss_pred cceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence 0000 0113455555432 23 3344444 899999999
Q ss_pred CCcee----------eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc-cceeeeeecCCceeeeeEEec
Q 006808 188 DHKKM----------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCID 256 (630)
Q Consensus 188 ~~~~~----------~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 256 (630)
++..+ .....|..+|.++.|.+.-..=+++| .+..+..|++...... .......+.+++. .-+-+.
T Consensus 184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpGv--~gvrIR 260 (323)
T KOG0322|consen 184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPGV--SGVRIR 260 (323)
T ss_pred CCceeeccccccccccchhhccCcceeeeechhhcCCcCCC-ccccceeeeeccccCcccccceEEecCCCc--cceEEc
Confidence 87432 33356889999999987655556666 4667889988654211 0111222233321 122222
Q ss_pred CCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcC
Q 006808 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (630)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (630)
||++.+|+++.|++|+||+.++++.+..
T Consensus 261 -----pD~KIlATAGWD~RiRVyswrtl~pLAV----------------------------------------------- 288 (323)
T KOG0322|consen 261 -----PDGKILATAGWDHRIRVYSWRTLNPLAV----------------------------------------------- 288 (323)
T ss_pred -----cCCcEEeecccCCcEEEEEeccCCchhh-----------------------------------------------
Confidence 8999999999999999999887766432
Q ss_pred ccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
++.|+..|.+++|+||..++ +.+|.|..|.+|++
T Consensus 289 --------LkyHsagvn~vAfspd~~lm-AaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 --------LKYHSAGVNAVAFSPDCELM-AAASKDARISLWKL 322 (323)
T ss_pred --------hhhhhcceeEEEeCCCCchh-hhccCCceEEeeec
Confidence 23677789999999998888 99999999999975
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-13 Score=141.31 Aligned_cols=167 Identities=12% Similarity=0.136 Sum_probs=128.2
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEe-CC-CC--ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEID-PL-TG--SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd-~~-~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~ 188 (630)
.|...+++.+++|.++++++|..||.|.+|. +. .+ .....+.-|...|.+++|+++|.+|++|+ +.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666789999999999999999999999995 32 11 23345667888999999999999999999 8999999999
Q ss_pred CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec--------CCceeeeeEEecCCcc
Q 006808 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--------HPAVFMDCRCIDNGGV 260 (630)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 260 (630)
++ .+-++.-.++|..+.++||+.+.+... .|+.|.+....+..... .+..+. ........++++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~--tIsgi~~~~~~~k~~~~~l~t~~~id---- 354 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKS--TISGIKPPTPSTKTRPQSLTTGVSID---- 354 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhh--hccCccCCCccccccccccceeEEEc----
Confidence 88 445576788999999999999888877 69999998875543221 111111 123445556665
Q ss_pred CCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 261 DDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 261 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
|..+.++-.+..|.|++||+-+...+...
T Consensus 355 -pr~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 355 -PRTNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred -CCCCceeecCCCceEEEEeccccceeeeE
Confidence 76677888889999999999887766543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-13 Score=141.78 Aligned_cols=296 Identities=14% Similarity=0.140 Sum_probs=197.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.|.++||+++++|+|..||+|.||.--... ..........|..+ .++++.|.+. |.+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------~~~~t~t~lHWH~~--------~V~~L~fS~~---------G~~ 265 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSS------DDSETCTLLHWHHD--------EVNSLSFSSD---------GAY 265 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccc------cccccceEEEeccc--------ccceeEEecC---------Cce
Confidence 456999999999999999999999632100 00000111111111 3445555444 889
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec-----------
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----------- 157 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------- 157 (630)
|++|+..|.+.+|.+.+++ .+++..-.++|..+.++||+.+......|..|.+....+.....++.+
T Consensus 266 LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 266 LLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred EeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccc
Confidence 9999999999999999998 367767789999999999999999888999999987755443333322
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-----c------CCCCeEEEEEeeCCcEEEEEee-----
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-----G------HPGAVRFMTFSDNGKYVLSSAV----- 219 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-----~------h~~~v~~l~~sp~~~~l~~~~~----- 219 (630)
..+-.+.++++|.-+.++..+ |.|.+||+.+.+.+..+. . +.-.+++++.+..|.++++.-.
T Consensus 344 ~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~ 423 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKF 423 (792)
T ss_pred ccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhh
Confidence 133467789999555555544 999999998876655442 1 2235777888888988887532
Q ss_pred --CC--CeEEEEEcCCCcccc-ceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCcccccccCce
Q 006808 220 --GE--RYIALWRTDGVKKQS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 220 --~d--~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.| -.+++|........- .......+|...++..+..+ +... ..++++.||.++||-+...+.+..+.
T Consensus 424 ~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-----~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~-- 496 (792)
T KOG1963|consen 424 NFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-----PTRSVRCVTASVDGDFKIWVFTDDSNIYKKS-- 496 (792)
T ss_pred hccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec-----CcccceeEEeccCCeEEEEEEecccccCcCc--
Confidence 12 357899876654321 11122345666665555554 3333 89999999999999875554432221
Q ss_pred eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceec
Q 006808 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (630)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (630)
..++| .+.+ ..|..++..++||.||.+| +.|.+.+
T Consensus 497 -s~W~c--------------~~i~----------------------------sy~k~~i~a~~fs~dGsll--a~s~~~~ 531 (792)
T KOG1963|consen 497 -SNWTC--------------KAIG----------------------------SYHKTPITALCFSQDGSLL--AVSFDDT 531 (792)
T ss_pred -cceEE--------------eeee----------------------------ccccCcccchhhcCCCcEE--EEecCCE
Confidence 11111 0000 1366789999999999875 5667999
Q ss_pred cccceecc
Q 006808 374 KRGRYVQN 381 (630)
Q Consensus 374 ~~~w~~~~ 381 (630)
+.+|+..+
T Consensus 532 Itiwd~~~ 539 (792)
T KOG1963|consen 532 ITIWDYDT 539 (792)
T ss_pred EEEecCCC
Confidence 99998754
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=122.57 Aligned_cols=190 Identities=19% Similarity=0.285 Sum_probs=144.1
Q ss_pred eEeEECCCCCEEEEeeCC--CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
+-+-||.+ ++|..+.+ +.+++++++.+..++++.-+ ..+.++..+ .
T Consensus 50 vEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp-------------------t~IL~VrmN-----------r 97 (391)
T KOG2110|consen 50 VEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP-------------------TSILAVRMN-----------R 97 (391)
T ss_pred EEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC-------------------CceEEEEEc-----------c
Confidence 33345543 56655543 34888888887777765411 122233322 3
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccC--CCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.|+++-.+. |+|||+.+-+.+.++.. .+..++.++.+++.+.+++.-+ ..|.|.+||+.+-+.+..+..|.+.+
T Consensus 98 ~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~l 176 (391)
T KOG2110|consen 98 KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPL 176 (391)
T ss_pred ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCce
Confidence 3455555544 99999999988766653 3666788888888888877533 56899999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--C-eEEEEECCCCceeeEeecCC--CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 163 SCMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g-~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+++|+|+|.+||+++ | .||||.+.+|+.+..|.... ..|.+++|+|++++|.+++ ..++|++|.+...
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKV 250 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CCCeEEEEEeccc
Confidence 9999999999999999 6 67999999999999986443 3578999999999998887 5889999998654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-15 Score=143.57 Aligned_cols=225 Identities=15% Similarity=0.213 Sum_probs=173.8
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.+.|+.+|.+|+.|+..|.|..+|+.++.+..++... ..+..+.|... .. +
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-------------------Etv~Dv~~LHn---------eq-~ 184 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-------------------ETVRDVTFLHN---------EQ-F 184 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehh-------------------hhhhhhhhhcc---------hH-H
Confidence 4589999999999999999999999999998877521 23334455443 22 3
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
++......++|||-..-+. ..+ ..| ..|..+.|-|..-+|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus 185 ~AVAQK~y~yvYD~~GtEl-HCl-k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNNGTEL-HCL-KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred HHhhhhceEEEecCCCcEE-eeh-hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 4445556689998654443 233 233 5789999999887899999999999999999999999998888999999999
Q ss_pred CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCc
Q 006808 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (630)
-+-.+-+|. |+|.+|......++..+-.|.++|.+|++.++|+|++++| .|+.++|||++..... ......++.
T Consensus 262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql---~t~~tp~~a 337 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQL---HTYRTPHPA 337 (545)
T ss_pred ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeecccccc---ceeecCCCc
Confidence 888888876 8999999999998888888999999999999999999999 5999999999987643 222223333
Q ss_pred eeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
. -+.++ + +-+++++....+.||.
T Consensus 338 ~---~ls~S------q-kglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 S---NLSLS------Q-KGLLALSYGDHVQIWK 360 (545)
T ss_pred c---ccccc------c-ccceeeecCCeeeeeh
Confidence 2 23332 3 3344555556899995
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=130.48 Aligned_cols=242 Identities=19% Similarity=0.225 Sum_probs=164.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCC----------------CcEEEEecccccccccccccccccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK----------------GQVQTEFADIASTETTSLYGNRLEREHLSVD 67 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~----------------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 67 (630)
..| -++.|+|+|++||+|+.+|.|.+|.... ......+.+|.. +
T Consensus 66 ~aV--N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~------------------d 125 (434)
T KOG1009|consen 66 RAV--NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD------------------D 125 (434)
T ss_pred cee--EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc------------------c
Confidence 456 4559999999999999999999997652 111222333333 3
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+-.++|.+. +.++++++.+..+++||+..|...... .+|...|..++|.|-++++++-+.|...+.+.+.
T Consensus 126 iydL~Ws~d---------~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 126 IYDLAWSPD---------SNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred hhhhhccCC---------CceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceeeee
Confidence 445666655 788999999999999999999998555 5799999999999999999999988877777765
Q ss_pred CCceeEEee---------------------cC--CCCeEEEEEccCCCEEEEeCC-----------eEEEEECCC-Ccee
Q 006808 148 TGSLLGKFR---------------------AS--TKGISCMAVSSDGKMLATAAG-----------QLKTFNCSD-HKKM 192 (630)
Q Consensus 148 ~~~~~~~~~---------------------~~--~~~v~~l~~~p~~~~l~~~~g-----------~i~lwd~~~-~~~~ 192 (630)
..+.++... .. ..-...++|+|+|.++++.+| ..++|+-.. .++.
T Consensus 196 ~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~ 275 (434)
T KOG1009|consen 196 LKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA 275 (434)
T ss_pred eeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce
Confidence 433222111 10 123456899999999998752 234554332 2345
Q ss_pred eEeecCCCCeEEEEEeeC------------------CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEE
Q 006808 193 QKFSGHPGAVRFMTFSDN------------------GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254 (630)
Q Consensus 193 ~~~~~h~~~v~~l~~sp~------------------~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (630)
..+++...+...+.|+|- +-.+++++ .+.+.+||..+..+. +....-|-..+.. .+
T Consensus 276 ~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt--~~svyvydtq~~~P~---~~v~nihy~~iTD-ia 349 (434)
T KOG1009|consen 276 ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT--KNSVYVYDTQTLEPL---AVVDNIHYSAITD-IA 349 (434)
T ss_pred eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee--cceEEEeccccccce---EEEeeeeeeeecc-ee
Confidence 566666667777776651 22344443 568999998887654 2222223333444 44
Q ss_pred ecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 255 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
|+ +||..++..+.||...+-.+...+.
T Consensus 350 ws-----~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 350 WS-----DDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ec-----CCCcEEEEeccCCceEEEEEcchhc
Confidence 44 7999999999999888776655544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=142.56 Aligned_cols=244 Identities=18% Similarity=0.210 Sum_probs=165.6
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee-----eEEccCCCCCCEEEEEEecCCC--EEEEEeC
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGS--CIYSAGA 137 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~-----~~~~~~~h~~~v~~~~~s~~g~--~l~s~~~ 137 (630)
...++|+.+++++ ..+++.|+.+|+|.+||+..+.. +......|..+++.+.|..+-. -|++++.
T Consensus 242 ~s~v~~~~f~p~~--------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 242 PSEVTCLKFCPFD--------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CCceeEEEeccCC--------cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 4578899999988 67899999999999999987765 2223346889999999976443 3999999
Q ss_pred CCcEEEEeCCCCce------eEEee------cCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCC---Cc-----eeeE
Q 006808 138 DGMVCEIDPLTGSL------LGKFR------ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSD---HK-----KMQK 194 (630)
Q Consensus 138 dg~v~iwd~~~~~~------~~~~~------~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~---~~-----~~~~ 194 (630)
||.|..|+++.-.. ..... .....+++++|.|. -..+++|+ |.|+--+... .. ....
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 99999998764322 11111 11237889999883 44566666 8776633222 11 1334
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC-CCEEEEEecC
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISET 273 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~d 273 (630)
+..|.++|.++.++|-+..++.++ .|-++++|.-..... .++.+......+..+.|+ |. ...++++..+
T Consensus 394 ~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~----Pl~~~~~~~~~v~~vaWS-----ptrpavF~~~d~~ 463 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIAS----PLLSLDSSPDYVTDVAWS-----PTRPAVFATVDGD 463 (555)
T ss_pred ccccCcceEeeecCCCccceeeee-ccceeEeccccCCCC----cchhhhhccceeeeeEEc-----CcCceEEEEEcCC
Confidence 567889999999999887666666 389999999773322 233334334434445554 44 3567788889
Q ss_pred CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcE
Q 006808 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (630)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (630)
|.|.|||+..... .|.. + .+.+.....
T Consensus 464 G~l~iWDLl~~~~----~Pv~-------------s------------------------------------~~~~~~~l~ 490 (555)
T KOG1587|consen 464 GNLDIWDLLQDDE----EPVL-------------S------------------------------------QKVCSPALT 490 (555)
T ss_pred Cceehhhhhcccc----CCcc-------------c------------------------------------ccccccccc
Confidence 9999999843211 1000 0 001112345
Q ss_pred EEeecCCcceeeccccceeccccceec
Q 006808 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.|+++|+.| +.|...|++.++++.
T Consensus 491 ~~~~s~~g~~l-avGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 491 RVRWSPNGKLL-AVGDANGTTHILKLS 516 (555)
T ss_pred eeecCCCCcEE-EEecCCCcEEEEEcC
Confidence 67788999999 999999999999884
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-13 Score=121.33 Aligned_cols=234 Identities=15% Similarity=0.196 Sum_probs=163.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++++|+.|..-+++|..+| .+||+++.-+....-..+.+ | ..+.-+.+ ..++
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~-------------G---~~~veMLf-----------R~N~ 60 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDG-------------G---FKIVEMLF-----------RSNY 60 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccC-------------c---hhhhhHhh-----------hhce
Confidence 5679999999998887655 79999875332211111110 0 00000100 1344
Q ss_pred EEEEeCCC-------eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCceeEEeecCCC
Q 006808 89 LVLGTGGG-------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTK 160 (630)
Q Consensus 89 l~~~~~~g-------~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~ 160 (630)
++..++.+ .|.|||=...+++.++ ....+|.++.+.++ .|++. ..+.|++|.+. ..+.++.+.....
T Consensus 61 laLVGGg~~pky~pNkviIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~N 135 (346)
T KOG2111|consen 61 LALVGGGSRPKYPPNKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSN 135 (346)
T ss_pred EEEecCCCCCCCCCceEEEEecccCcEEEEE--EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccC
Confidence 44433332 4999997777776666 36689999999765 56665 46789999987 5566666654332
Q ss_pred --CeEEEEEccCCCEEEEeC---CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCC-eEEEEEcCCC
Q 006808 161 --GISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGV 232 (630)
Q Consensus 161 --~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~-~i~vwd~~~~ 232 (630)
.+.+++-+.+..+||.-+ |.|+|.|+...+. ...+..|.+.|.+++.+.+|..+++++. .| -|||||..++
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-kGTLIRIFdt~~g 214 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-KGTLIRIFDTEDG 214 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-CcEEEEEEEcCCC
Confidence 344443333455666655 8999999987654 4677899999999999999999999885 55 5899999999
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+. +.+..+.....+.++.|+ |++.+|+++|..|+++||.++.-
T Consensus 215 ~~l---~E~RRG~d~A~iy~iaFS-----p~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 TLL---QELRRGVDRADIYCIAFS-----PNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cEe---eeeecCCchheEEEEEeC-----CCccEEEEEcCCCeEEEEEeecC
Confidence 866 556666666778888887 99999999999999999998653
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-13 Score=125.94 Aligned_cols=194 Identities=20% Similarity=0.344 Sum_probs=140.9
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.+|.+ +|++.-.-||++..|-+|++|+-.. ++...++ ......++|++|-|-.
T Consensus 100 dlr~~--aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-----------------s~sQrnvtclawRPls------- 152 (445)
T KOG2139|consen 100 DLRGV--AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-----------------SVSQRNVTCLAWRPLS------- 152 (445)
T ss_pred ceeeE--eechhhhhhhhhccCcEEEEeccCC-CCCceec-----------------chhhcceeEEEeccCC-------
Confidence 34445 8999777888999999999999665 4444443 2335678999999886
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEE-----------c--cCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCc
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWR-----------L--SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGS 150 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~-----------~--~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~ 150 (630)
...|++|+..| |++|.....-...+ + ..+| .+|+++.|++||..+++++ .|..|.+||..++.
T Consensus 153 -aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 153 -ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred -cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 55678877765 88997643211101 1 1244 5899999999999999987 46789999999998
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.+.......+.++-+.|+|||.+|+++. +..++|+.....-.....-..+.|...+|+|.|++|+.+++.. -++|.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs--p~lys 307 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS--PRLYS 307 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC--ceEEE
Confidence 7766544566889999999999998887 8999996544322222333455899999999999998887543 45555
Q ss_pred cC
Q 006808 229 TD 230 (630)
Q Consensus 229 ~~ 230 (630)
+.
T Consensus 308 l~ 309 (445)
T KOG2139|consen 308 LT 309 (445)
T ss_pred Ee
Confidence 44
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5e-14 Score=135.88 Aligned_cols=284 Identities=19% Similarity=0.271 Sum_probs=191.2
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+-|..+ .|+..|..|++||.|.+|.+||+.++.....|.+ ||..... .-.|.|+..
T Consensus 143 GcVntV--~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----------------GH~~Nvf-QaKFiP~s~----- 198 (559)
T KOG1334|consen 143 GCVNTV--HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----------------GHCNNVF-QAKFIPFSG----- 198 (559)
T ss_pred Ccccee--eecccCceeeccCccceEEeehhhccCccccccc----------------ccccchh-hhhccCCCC-----
Confidence 556444 9999999999999999999999999988776642 3322111 122444433
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeee--EEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEee---c
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR---A 157 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~---~ 157 (630)
..-+++++.+|.|++=.+.....+ ......|.++|.-++.-|+..+ |++++.|+.+.-+|++.+.+...+. .
T Consensus 199 --d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 199 --DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred --CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 455899999999988766433222 2333469999999999996655 9999999999999999876544433 2
Q ss_pred CCC---CeEEEEEccCCC-EEEEeC--CeEEEEECCCCc------eeeEeecC------CCCeEEEEEeeCCcEEEEEee
Q 006808 158 STK---GISCMAVSSDGK-MLATAA--GQLKTFNCSDHK------KMQKFSGH------PGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 158 ~~~---~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~------~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+.. ..+.++.+|... .+++++ .-+++||.+.-. .+.+|..| ...|++++|+.++.-++++-
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY- 355 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY- 355 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-
Confidence 223 568899999666 666666 578999976532 23344322 34699999997776666654
Q ss_pred CCCeEEEEEcCCCcc----------ccceeeeeecCC--ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 220 GERYIALWRTDGVKK----------QSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.|-.|+++.-..+.- .-..+++. +|. ..+-.+-+|. |...|+++|+.-|.|.||+-++++.+
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK-GHrN~~TVKgVNFfG-----PrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK-GHRNSRTVKGVNFFG-----PRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhc-ccccccccceeeecc-----CccceEEecCccceEEEEecchhHHH
Confidence 577899995433221 00111122 222 2233444555 88999999999999999999999988
Q ss_pred cccCceeEEeeccCCCcccccchhhhhhhccccccccC
Q 006808 288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP 325 (630)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 325 (630)
+-.+.....+.|.. | ....|.+++++.+--|++
T Consensus 430 ~~MegDr~VVNCLE---p--HP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 430 RFMEGDRHVVNCLE---P--HPHLPVLASSGIDHDVKI 462 (559)
T ss_pred HHhhcccceEeccC---C--CCCCchhhccCCccceee
Confidence 87766666666533 2 223446777777764444
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-13 Score=117.19 Aligned_cols=241 Identities=15% Similarity=0.190 Sum_probs=154.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEeccccccccccccccccccccc-ccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL-SVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~w~~~~~~~~ 81 (630)
.+||+.+ +|. ..+|++|+ ||.|+=|.+.....-...+..-. ..++...+.. -..++++.-.|.
T Consensus 62 dgpiy~~--~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe------~~~P~~~~~~evPeINam~ldP~----- 125 (325)
T KOG0649|consen 62 DGPIYYL--AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWE------VKIPMQVDAVEVPEINAMWLDPS----- 125 (325)
T ss_pred CCCeeee--eee--hhheeecc-CceEEEeeehhhhhhccchhhhh------hcCccccCcccCCccceeEeccC-----
Confidence 4688444 887 34677776 59999998764332111110000 0000000111 123333333333
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC--
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-- 159 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-- 159 (630)
.+.++++++|+.++-||+.+|+....+ ++|+..|.++.-......+++|+.||++++||++++++++.+....
T Consensus 126 ----enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 126 ----ENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred ----CCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 445666679999999999999988555 6999999999985556679999999999999999999988865422
Q ss_pred --------CCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 160 --------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 160 --------~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
..|.+++. +..++++|+ -.+.+|++++.++...|+ -..++..+.|..+ .++++| ..+.+.-|.+.
T Consensus 201 ~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l~ 274 (325)
T KOG0649|consen 201 NLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGG-EGNHVQSYTLN 274 (325)
T ss_pred hhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEec-cccceeeeeec
Confidence 24555555 456899988 589999999999888886 4567888888754 566766 57789999876
Q ss_pred CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
.--. .....+++.....+...+ | -++|-+++..+.+.|+.
T Consensus 275 Gvl~----a~ip~~s~~c~s~s~~~~-----p-~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 275 GVLQ----ANIPVESTACYSASWQTS-----P-IKFISIAGFSNKLHILK 314 (325)
T ss_pred cEEE----EeccCCccceeeecccCC-----c-eEEEEecccceeeeeee
Confidence 5321 122233332222221111 3 35566667777888764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=132.11 Aligned_cols=223 Identities=14% Similarity=0.163 Sum_probs=157.3
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
++|||+|+|+|+++.- ++.|=|..+-+..+.|.-. ..+.-+.|...+ ...|.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl-------------------dki~yieW~ads--------~~ilC 65 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL-------------------DKIVYIEWKADS--------CHILC 65 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH-------------------HHhhheeeeccc--------eeeee
Confidence 5899999999999864 8888888776655433210 123345565443 44566
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
....++.|.+|++...+....+.. -..++.+++|+|+|+.|+ +..-+-.|.+|.+.+.+.... +-.+..+..++|+|
T Consensus 66 ~~yk~~~vqvwsl~Qpew~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 66 VAYKDPKVQVWSLVQPEWYCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHP 143 (447)
T ss_pred eeeccceEEEEEeecceeEEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECC
Confidence 677888999999998888777754 567899999999997754 556788999999988766433 33445678999999
Q ss_pred CCCEEEEeCC-----eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC----eEEEEEcCCCccccceee
Q 006808 170 DGKMLATAAG-----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCV 240 (630)
Q Consensus 170 ~~~~l~~~~g-----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~~~~~~~~ 240 (630)
+|++.+.+++ -+.+........++.|.-.+...+.+.|+|||..+++- |. .|..|.
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw---d~~Leykv~aYe------------ 208 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW---DNVLEYKVYAYE------------ 208 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe---cchhhheeeeee------------
Confidence 9999998872 23333334455667777677788999999999887762 32 122221
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
.+.-+....++ |.+++|+.|+.|+.++|.+--+-+.+.
T Consensus 209 -----~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 209 -----RGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred -----eccceeEEEec-----cccceEEeeccchhhhhhceeeeeehh
Confidence 11223344455 889999999999999998765555443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=143.09 Aligned_cols=254 Identities=17% Similarity=0.200 Sum_probs=174.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEEC-CCC----cEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDT-LKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~-~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
..|.++++-=.-|..++++|+.||.||||+- .++ +.+..+.+..+- .. +..+ ....+.|....
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~----~~------~~r~-~~~v~dWqQ~~- 1177 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ----LP------GARG-TGLVVDWQQQS- 1177 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccccc----Cc------cCCC-CCeeeehhhhC-
Confidence 3465553333446678999999999999953 332 334434332211 11 1111 22456787664
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCc---eeEE
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS---LLGK 154 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~---~~~~ 154 (630)
..|++++.-..|+|||.....++..+..+....|+++.-+- .|+.|++|..||.|++||.+... .+..
T Consensus 1178 --------G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1178 --------GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred --------CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 34555555778999999999888888777777888887654 56899999999999999987643 4667
Q ss_pred eecCCCC--eEEEEEccCCCE-EEEeC--CeEEEEECCCCceee--EeecCC--C-CeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 155 FRASTKG--ISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQ--KFSGHP--G-AVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 155 ~~~~~~~--v~~l~~~p~~~~-l~~~~--g~i~lwd~~~~~~~~--~~~~h~--~-~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
++.|... |..+.+.+.|-- |++|+ |.|++||++...... +...|- + ..+++..++....+++++ . +.|
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~i 1327 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLI 1327 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceE
Confidence 7888876 999999987654 88888 999999998752222 222332 3 589999999998888776 3 899
Q ss_pred EEEEcCCCcccccee-eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 225 ALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+||++...+....+. -..++.......++.|. |...++++|+.|..|.||.....
T Consensus 1328 kIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FH-----P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1328 KIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFH-----PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred EEEecChhhhcccccCcccccCcCCCcceeeec-----chhHhhhhccCCceEEEeecCCc
Confidence 999998765431111 01112223334677777 88889999999999999986544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=125.91 Aligned_cols=200 Identities=12% Similarity=0.153 Sum_probs=153.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
..|| .|.+|++|++.+|.+-+...|.||.....+ ..++++.|. ..++++.|.+.
T Consensus 10 ~~pi--tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd------------------~~vtgvdWap~--- 66 (361)
T KOG1523|consen 10 LEPI--TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD------------------KIVTGVDWAPK--- 66 (361)
T ss_pred cCce--eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC------------------cceeEEeecCC---
Confidence 4688 677999999999999999999999877655 455555443 35567777776
Q ss_pred cccccCCcEEEEEeCCCeEEEEEcc-CCeee--EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee----
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVS-AGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---- 152 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~-~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~---- 152 (630)
.+.|++|+.|..-++|... .++-. ..+ ..|+..++++.|+|.++.|++|+....|.+|-++...-.
T Consensus 67 ------snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK 139 (361)
T KOG1523|consen 67 ------SNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK 139 (361)
T ss_pred ------CCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence 5569999999999999984 34322 223 358899999999999999999999999999987643322
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEEC-----CC-------------CceeeEeecCCCCeEEEEEeeCCc
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-----SD-------------HKKMQKFSGHPGAVRFMTFSDNGK 212 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~-----~~-------------~~~~~~~~~h~~~v~~l~~sp~~~ 212 (630)
+.-+.+...|.+++|+|++-++++|+ +.+++|.. +. |+.+..+....+.+..+.|+|+|.
T Consensus 140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 11233456899999999999999988 77777753 11 233344445667899999999999
Q ss_pred EEEEEeeCCCeEEEEEcCCCc
Q 006808 213 YVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.|+-.+ .|..+.+-|.....
T Consensus 220 ~lawv~-Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 220 RLAWVG-HDSTVSFVDAAGPS 239 (361)
T ss_pred EeeEec-CCCceEEeecCCCc
Confidence 999998 69999999987765
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=134.41 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=145.9
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeec--
Q 006808 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG-- 197 (630)
Q Consensus 121 ~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~-- 197 (630)
..++|+++|..+++++.||++|+|+..+...+.....|.+.|.++.|+|||++|++.+ ...+||+..++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS 227 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence 7899999999999999999999999888888878888999999999999999999988 7999999999977666542
Q ss_pred CCCCeEEEEEeeCC---c-EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC
Q 006808 198 HPGAVRFMTFSDNG---K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (630)
Q Consensus 198 h~~~v~~l~~sp~~---~-~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 273 (630)
.......+.|+.++ . ++++.-..-+.|+.|++...+..........-.....++++..+ ++|++++.|+.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~AlGT~d 302 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLALGTMD 302 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-----CCCcEEEEeccC
Confidence 22346678888776 3 33333323456777776543321000111111223345666666 999999999999
Q ss_pred CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcE
Q 006808 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (630)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (630)
|.|-|++..+.+.+.- .|. .|...|+
T Consensus 303 GsVai~~~~~lq~~~~--------------vk~----------------------------------------aH~~~VT 328 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQY--------------VKE----------------------------------------AHLGFVT 328 (398)
T ss_pred CcEEEEEeceeeeeEe--------------ehh----------------------------------------hheeeee
Confidence 9999999865544221 111 5777899
Q ss_pred EEeecCCcceeeccccceecccccee
Q 006808 354 NLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+.|+||.+++ ++-|.|...++..+
T Consensus 329 ~ltF~Pdsr~~-~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 329 GLTFSPDSRYL-ASVSSDNEAAVTKL 353 (398)
T ss_pred eEEEcCCcCcc-cccccCCceeEEEE
Confidence 99999999999 77777777666554
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.5e-14 Score=125.88 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=152.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.| .|+.|..++. |.+|..-|.|++|++.+......+..+. .. ++.|...-+
T Consensus 15 ~~v--~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g-----------------~~---~it~lq~~p----- 66 (323)
T KOG0322|consen 15 SSV--TSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFG-----------------RL---FITNLQSIP----- 66 (323)
T ss_pred chh--eehhhccchh-hhcccccceEEEEEeecCccchhhhhhc-----------------cc---eeeceeecC-----
Confidence 456 3447777664 8889999999999999887766555221 11 112211111
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeee--------------EEcc------------------------------------
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLK--------------WRLS------------------------------------ 113 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~--------------~~~~------------------------------------ 113 (630)
+..+.+-+.|+.+.+|++.-+..+ ..+.
T Consensus 67 --~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 67 --NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred --CcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc
Confidence 233455555666666665442110 0000
Q ss_pred --CCCCCCEEEEEEec-CCCE--EEEEeCCCcEEEEeCCCCc----------eeEEeecCCCCeEEEEEccCCCEEEEeC
Q 006808 114 --DCHPGGVSAISFAT-HGSC--IYSAGADGMVCEIDPLTGS----------LLGKFRASTKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 114 --~~h~~~v~~~~~s~-~g~~--l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 178 (630)
.+..+.+.+..+.. .+.+ +++|-.+|.|.+||+.++. .......|..+|.++.|.+.-..=++|+
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg 224 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG 224 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence 01223455555432 3333 5677789999999999873 3333446888999999987544444555
Q ss_pred --CeEEEEECCCC--ce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeee
Q 006808 179 --GQLKTFNCSDH--KK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 179 --g~i~lwd~~~~--~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (630)
..+..|++... .+ .....-..-.|..+.+-||++.++++| +|+.|+||+.++..+. .++. .+..-+.+
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrtl~pL---AVLk--yHsagvn~ 298 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRTLNPL---AVLK--YHSAGVNA 298 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc-cCCcEEEEEeccCCch---hhhh--hhhcceeE
Confidence 57777876532 21 112222234578889999999999998 8999999999998865 3333 33355677
Q ss_pred EEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 253 RCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
++|+ |+...+|+++.|++|.+|++
T Consensus 299 vAfs-----pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 299 VAFS-----PDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEeC-----CCCchhhhccCCceEEeeec
Confidence 7787 89899999999999999986
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-15 Score=151.38 Aligned_cols=240 Identities=18% Similarity=0.158 Sum_probs=172.0
Q ss_pred CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce
Q 006808 114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK 191 (630)
Q Consensus 114 ~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~ 191 (630)
.+|...|.|+.|...|.++++|+.|..++||.+.++.+.....+|.+.++.++.+.+..++++++ ..|++|-+..+.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 48999999999999999999999999999999999999999999999999999999999999998 5799999999999
Q ss_pred eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 192 ~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
+..+.+|++.|++++|+|-. +++ .||++++||.+-.-.. ......-......+.+..|. ..+..+++++
T Consensus 267 vsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~-y~prp~~~~~~~~~~s~~~~-----~~~~~f~Tgs 335 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRI-YVPRPLKFTEKDLVDSILFE-----NNGDRFLTGS 335 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCC-CCCceEeccccccccc-cCCCCCCcccccceeeeecc-----cccccccccc
Confidence 99999999999999999964 444 7999999998821111 00000011122334444454 5678899999
Q ss_pred cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCC
Q 006808 272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351 (630)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~ 351 (630)
.|+....|....... +.....-+. ++.+.. .+.+++..+-... +|. .........+.+|..+
T Consensus 336 ~d~ea~n~e~~~l~~---~~~~lif~t----~ssd~~---~~~~~ar~~~~~~-----vwn---l~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAW---RSNLLIFVT----RSSDLS---SIVVTARNDHRLC-----VWN---LYTGQLLHNLMGHSDE 397 (1113)
T ss_pred CCcccccchhhHhhh---hccceEEEe----cccccc---ccceeeeeeeEee-----eee---cccchhhhhhcccccc
Confidence 999988887532211 111111111 000110 1333333322111 121 2222233456689999
Q ss_pred cEEEeecCCcceeeccccceeccccceeccc
Q 006808 352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
+..+.++|-+..++++.+.||+..+|++..+
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 9999999999888799999999999998544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-13 Score=139.74 Aligned_cols=235 Identities=11% Similarity=-0.002 Sum_probs=152.4
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
..|.+||....... .+ ..|...+.+++|+|+|+.|+.++.+ ..|++||+.+++.... ....+....++|+|||+
T Consensus 184 ~~i~i~d~dg~~~~-~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 184 YEVRVADYDGFNQF-IV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred EEEEEECCCCCCce-Ee-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 57999998765532 33 3577889999999999998877643 3699999988764322 22223345689999999
Q ss_pred EEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCc
Q 006808 173 MLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247 (630)
Q Consensus 173 ~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 247 (630)
.|+++. | .|++||+.++. ...+..+...+....|+|+|+.++.++..++...||++...... ...+.+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~----~~~l~~~~ 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG----ASLVGGRG 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEecCCC
Confidence 888764 4 45666876665 45566677778899999999988877656778888876543221 11112222
Q ss_pred eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCc
Q 006808 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (630)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 327 (630)
....++ |+|++|+.++.++ +.+||+.++....-..... .....++|+++ .|+.++.++...
T Consensus 336 ---~~~~~S-----pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~---~~~~~~sPdG~----~i~~~s~~g~~~--- 396 (429)
T PRK01742 336 ---YSAQIS-----ADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL---DESPSISPNGI----MIIYSSTQGLGK--- 396 (429)
T ss_pred ---CCccCC-----CCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC---CCCceECCCCC----EEEEEEcCCCce---
Confidence 122344 9999998887754 6669998875432111111 11223688887 788777765332
Q ss_pred eeEEEEEcCccCceeeEEeccCCCcEEEeecCC
Q 006808 328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360 (630)
Q Consensus 328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d 360 (630)
++... .........+..|.+.+...+|||-
T Consensus 397 --~l~~~-~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 397 --VLQLV-SADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --EEEEE-ECCCCceEEccCCCCCCCCcccCCC
Confidence 22221 1123345566678888888999984
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=132.24 Aligned_cols=205 Identities=15% Similarity=0.179 Sum_probs=151.1
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (630)
+.|+.+++||++.|.+ ..++.-..+..|.+.+.+-.|+++ |.-|++++.||.
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~d---------------------------GtgLlt~GEDG~ 127 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPD---------------------------GAGLLTAGEDGV 127 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCC---------------------------CceeeeecCCce
Confidence 5789999999999987 457777777766665554444444 777999999999
Q ss_pred EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEe
Q 006808 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~ 177 (630)
|++|.-. |-...++ .....+|.|++|.|+.+.++-+ ..+.+.|=.+.....+-.++.|.+-|.++.|+|...++++|
T Consensus 128 iKiWSrs-GMLRStl-~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 128 IKIWSRS-GMLRSTV-VQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred EEEEecc-chHHHHH-hhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeec
Confidence 9999843 4333233 2356789999999987776555 33456776777666677899999999999999999999999
Q ss_pred C--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEe
Q 006808 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 178 ~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (630)
+ -..++||. .|+.+..-..|..+|++++|+|+ +.++.++ -+++++=.. ..+.+.... |
T Consensus 205 GED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S--~nt~R~~~p---------------~~GSifnls-W 264 (737)
T KOG1524|consen 205 GEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWS--YNTARFSSP---------------RVGSIFNLS-W 264 (737)
T ss_pred CCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeee--eeeeeecCC---------------CccceEEEE-E
Confidence 9 58899996 56667666779999999999999 5555554 335552111 223333333 4
Q ss_pred cCCccCCCCCEEEEEecCCcEEE
Q 006808 256 DNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
+ +||..++.|+..|.+.+
T Consensus 265 S-----~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 265 S-----ADGTQATCGTSTGQLIV 282 (737)
T ss_pred c-----CCCceeeccccCceEEE
Confidence 3 89999999999887654
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.9e-13 Score=119.28 Aligned_cols=204 Identities=11% Similarity=0.153 Sum_probs=144.6
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC--eeeE-Ec-----cCCCCCCEEEEEEec-CCCEEEEEe
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKW-RL-----SDCHPGGVSAISFAT-HGSCIYSAG 136 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--~~~~-~~-----~~~h~~~v~~~~~s~-~g~~l~s~~ 136 (630)
...+.+.|.|..... ... +.++.+..+++|.+... .... .. ...+.++++++.|+. +-++|.+++
T Consensus 97 YP~tK~~wiPd~~g~----~pd--lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGV----YPD--LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCccceEecCCcccc----Ccc--hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 456677777765210 022 44556677999998742 2110 11 134668999999987 677899999
Q ss_pred CCCcEEEEeCCCCce---eEEeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEe---ecCCCCeEEEEE
Q 006808 137 ADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTF 207 (630)
Q Consensus 137 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~ 207 (630)
-|-+..|||+.++.. ...+-+|...|+.++|..++. .+|+.+ |++++||++...-...+ +....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 999999999998743 445778999999999998654 556665 99999999876543333 222467888999
Q ss_pred eeCC-cEEEEEeeCCCeEEEEEcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 208 SDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 208 sp~~-~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
++.. +++++-..+...|.|.|++..... +..+ .|.+.+..+.|.+ ..+.+|++++.|..+.|||+.+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tp----va~L~~H~a~VNgIaWaP-----hS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTP----VARLRNHQASVNGIAWAP-----HSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcc----eehhhcCcccccceEecC-----CCCceeeecCCcceEEEEecccc
Confidence 8754 677777765668999999987644 3333 4555555555554 45689999999999999998643
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=135.08 Aligned_cols=136 Identities=21% Similarity=0.410 Sum_probs=114.0
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC--------------ee--------------eEEccCCC
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--------------QL--------------KWRLSDCH 116 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--------------~~--------------~~~~~~~h 116 (630)
...++|+.|.+-+ ...++++-.+|.+.+||.... .. +..+. --
T Consensus 219 ktsvT~ikWvpg~--------~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~ 289 (636)
T KOG2394|consen 219 KSSVTCIKWVPGS--------DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH-IG 289 (636)
T ss_pred ccceEEEEEEeCC--------CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE-ec
Confidence 4689999999987 667888899999999975311 00 00000 01
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~ 194 (630)
.+.|..++|+|||++|++.+.||.++|||+.+.+.+..++.--+...|++|+|||++|++|+ .-|.||.+..++.+..
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence 24789999999999999999999999999998888877777777899999999999999999 7999999999999999
Q ss_pred eecCCCCeEEEEEee
Q 006808 195 FSGHPGAVRFMTFSD 209 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp 209 (630)
-.+|..+|+.|+|.|
T Consensus 370 GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 370 GQGHKSWVSVVAFDP 384 (636)
T ss_pred ccccccceeeEeecc
Confidence 999999999999983
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=135.33 Aligned_cols=229 Identities=15% Similarity=0.213 Sum_probs=160.0
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .|++|+.||+.||+|+.|..|.||+-+-...+. + .| ...+.|+.|+|.
T Consensus 54 DtV--ycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y------------------SH-~D~IQCMsFNP~------- 104 (1081)
T KOG1538|consen 54 DTV--YCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y------------------SH-NDAIQCMSFNPI------- 104 (1081)
T ss_pred ceE--EEEEEccCCceeccCCCceeEEEecccccceee-e------------------cc-CCeeeEeecCch-------
Confidence 356 677999999999999999999999865322221 1 22 235667777776
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee---cCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR---ASTK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~ 160 (630)
...+++|+- ...-+|.......... .....|.+++|..||.+|+.|-.+|+|.+-+ .+++....+. +...
T Consensus 105 --~h~LasCsL-sdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 105 --THQLASCSL-SDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNS 177 (1081)
T ss_pred --HHHhhhcch-hhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCC
Confidence 344555554 3467888766544311 2346789999999999999999999999987 3455444443 3556
Q ss_pred CeEEEEEccCC-----CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 161 GISCMAVSSDG-----KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 161 ~v~~l~~~p~~-----~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+|.+++|+|.. ..+++.. .++.+|.+ +|+.+..-..-.-...|+.+-|+|.|++.+|+ |+.+++|.-..-.
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs-dk~L~~fTR~Gvr 255 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGS-DKQLSLFTRDGVR 255 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccC-CCceEEEeecCeE
Confidence 99999999953 3666666 57777776 45544433333345578899999999999995 9999998644322
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.-+.+.....+..+... |++++++.|+.||+|--|++
T Consensus 256 ------LGTvg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 256 ------LGTVGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ------EeeccccceeEEEEEEc-----cCCceEEEEEccCeeehhhh
Confidence 22333344444445554 99999999999999998885
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=128.43 Aligned_cols=164 Identities=20% Similarity=0.329 Sum_probs=121.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccC----CCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC------------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT------------ 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~----~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~------------ 148 (630)
+--+++|-..|.|.+.|+...+.. +++. -....|+|+.|-|.+. .|+.+-.+|.++++|..-
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CcceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 666889999999999998763322 2111 1336899999999544 466677899999997531
Q ss_pred --C--------------ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeC
Q 006808 149 --G--------------SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210 (630)
Q Consensus 149 --~--------------~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~ 210 (630)
+ .++..+....+.|...+|+|||++||+.+ |.++|||..+.+++..++..-+...|++||||
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence 1 11222223345788899999999999999 99999999998888777777788999999999
Q ss_pred CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEec
Q 006808 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256 (630)
Q Consensus 211 ~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (630)
|+|++++| +|.-|.||.+...+. +..-+.+...+..++|.
T Consensus 344 GKyIvtGG-EDDLVtVwSf~erRV-----VARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 344 GKYIVTGG-EDDLVTVWSFEERRV-----VARGQGHKSWVSVVAFD 383 (636)
T ss_pred ccEEEecC-CcceEEEEEeccceE-----EEeccccccceeeEeec
Confidence 99999999 799999999988763 22333444455555554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-12 Score=128.62 Aligned_cols=320 Identities=13% Similarity=0.119 Sum_probs=179.4
Q ss_pred CEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 18 DYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 18 ~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
++++ +-..+|.|.|.|..+.+.+..+...........|+++ ++++++++.+|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------------gr~~yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------------GRYLYVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------------SSEEEEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------------CCEEEEEcCCC
Confidence 4554 4446899999999999999988754332233334444 78899999999
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEeecC-------CCCeEEEEEc
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVS 168 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~~ 168 (630)
.|.++|+.+++.+.++..+ ....++++++||+++++++ ..+.+.++|..+.+.++.+... ...+..+..+
T Consensus 59 ~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 59 TVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp EEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred eEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 9999999999998888644 5678999999999988765 6899999999999998887643 2367788888
Q ss_pred cCCCEEEEe-C--CeEEEEECCCCceee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 169 SDGKMLATA-A--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 169 p~~~~l~~~-~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
|....+++. - +.|.+.|....+.+. +............|+|+++|++++....+.|-++|..+++.. .....+
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v---~~i~~g 213 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV---ALIDTG 213 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE---EEEE-S
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE---EEeecc
Confidence 888855554 3 888888987765432 222234566788999999999887767889999998887643 111111
Q ss_pred CCceeeeeEEecCCc------cCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 245 HPAVFMDCRCIDNGG------VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~------~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
..........+.+-. ....+...++.-..+.+.+|+..+.+.++..+........ ..+|+++ ++.+..
T Consensus 214 ~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi--~thP~s~----~vwvd~ 287 (369)
T PF02239_consen 214 KKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFI--KTHPDSR----YVWVDT 287 (369)
T ss_dssp SSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--E--E--TT-S----EEEEE-
T ss_pred ccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCccee--ecCCCCc----cEEeec
Confidence 111111111110000 0012233323333345667777777666544322111110 0245555 666552
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccC-CCcEEEeecCCcceeecccccee-cccccee
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNS-GEDINLNCSQDGVLLPMSQSLLK-SKRGRYV 379 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~-~~v~~~~~s~dg~~l~~s~s~d~-~~~~w~~ 379 (630)
.-+- ....+.+.+- .......++.... ..+..+.|++||+.+.+|.-..+ .+.+++.
T Consensus 288 ~~~~---~~~~v~viD~-~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 288 FLNP---DADTVQVIDK-KTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp TT-S---SHT-EEEEEC-CGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cCCC---CCceEEEEEC-cCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 2110 0223333332 2222233332222 24889999999998866654444 5666654
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-13 Score=138.30 Aligned_cols=189 Identities=15% Similarity=0.143 Sum_probs=125.4
Q ss_pred cccceeEeEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++ ...+|||||++||+++.+ ..|++||+.++..... .... ++ .....|.|.
T Consensus 204 ~~v--~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~--------------g~----~~~~~wSPD---- 258 (429)
T PRK01742 204 QPL--MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR--------------GH----NGAPAFSPD---- 258 (429)
T ss_pred Ccc--ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC--------------Cc----cCceeECCC----
Confidence 356 556999999999988753 4699999988764321 1111 11 113456554
Q ss_pred ccccCCcEEEEE-eCCCeE--EEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCC-ceeEEe
Q 006808 81 KRKLGSSLLVLG-TGGGDV--LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG-SLLGKF 155 (630)
Q Consensus 81 ~~~~~~~~l~~~-~~~g~v--~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~-~~~~~~ 155 (630)
++.|+++ +.+|.+ ++||+.++... .+. .+...+.+..|+|||+.|+.++ .++...+|++... .....+
T Consensus 259 -----G~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 259 -----GSRLAFASSKDGVLNIYVMGANGGTPS-QLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred -----CCEEEEEEecCCcEEEEEEECCCCCeE-eec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 5556665 467764 55577666543 333 4666788999999999876554 5788888876432 222223
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
.+.. .+..|+|+|++|++++ ..+.+||+.+++.......+ ....+.|+|+|++|++++ .++.+.+|.+.
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~ 401 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLV 401 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEE
Confidence 3333 4678999999998877 66777999888754322222 335678999999999988 47877777753
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=120.03 Aligned_cols=195 Identities=13% Similarity=0.248 Sum_probs=135.1
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEE
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCE 143 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~i 143 (630)
..+..-++|++. -..+++++.|..|++|+-.. .+...+.......|+|++|-|.+. -|+.|+..| |.+
T Consensus 98 ~~dlr~~aWhqH---------~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ici 166 (445)
T KOG2139|consen 98 EIDLRGVAWHQH---------IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICI 166 (445)
T ss_pred hcceeeEeechh---------hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEE
Confidence 345666788874 44578999999999999877 443344434456899999999554 577777665 899
Q ss_pred EeCCC----Cce--------eEEeecC-CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEE
Q 006808 144 IDPLT----GSL--------LGKFRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTF 207 (630)
Q Consensus 144 wd~~~----~~~--------~~~~~~~-~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~ 207 (630)
|.... ++. .+.++.. ..+|+++.|++||..+++++ ..|.|||..++..+....-..+.++-+.|
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW 246 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence 97542 121 1122221 24899999999999999998 69999999998865544444567889999
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
||||.+|+++. -|+..++|+....... ..... ..+ .+...+++ |.|++|+..+. |.-.+|.+.
T Consensus 247 SPdgd~lfaAt-~davfrlw~e~q~wt~---erw~l-gsg-rvqtacWs-----pcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 247 SPDGDVLFAAT-CDAVFRLWQENQSWTK---ERWIL-GSG-RVQTACWS-----PCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred cCCCCEEEEec-ccceeeeehhccccee---cceec-cCC-ceeeeeec-----CCCCEEEEEEc-CCceEEEEe
Confidence 99999999988 5999999965443211 01111 222 45566666 99998876655 445566543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=117.54 Aligned_cols=132 Identities=18% Similarity=0.333 Sum_probs=99.2
Q ss_pred CeEEEEEccCCe-eeEEccCCCCCCEEEEEEecCCCEEEEE--eCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCC
Q 006808 96 GDVLALAVSAGQ-LKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 96 g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~s~~g~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
|...+|.+.... ....+.....++|.+++|+|+|+.|+++ ..++.|.+||++ ++.+..+. ...+..+.|+|+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence 345556553322 2223322345679999999999987654 356799999996 66666664 45778999999999
Q ss_pred EEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC-----CCeEEEEEcCCC
Q 006808 173 MLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----ERYIALWRTDGV 232 (630)
Q Consensus 173 ~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~-----d~~i~vwd~~~~ 232 (630)
+|++++ |.+.+||.++.+.+.++. | ..++.++|+|+|++|+++.+. |+.++||+....
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999986 579999999888887765 3 347899999999999998753 678999998654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-12 Score=121.25 Aligned_cols=190 Identities=15% Similarity=0.209 Sum_probs=144.8
Q ss_pred CEEEEeeCCCcEEEEECCCCcE----EEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 18 DYFAICSGDARIKIWDTLKGQV----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
..|.+|-.+|.+.+|....+.. +..+..+ .....+.-.+.. ..++++|+
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-------------------~g~~~~r~~~~~--------p~Iva~GG 168 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-------------------PGLYDVRQTDTD--------PYIVATGG 168 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecC-------------------CceeeeccCCCC--------CceEecCc
Confidence 3677888899999999875431 1111111 011111111221 45667788
Q ss_pred CC--CeEEEEEccCCeeeEEccCC--------CCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCC
Q 006808 94 GG--GDVLALAVSAGQLKWRLSDC--------HPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG-SLLGKFRASTK 160 (630)
Q Consensus 94 ~~--g~v~iwd~~~~~~~~~~~~~--------h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~ 160 (630)
.. ..+.|||+...+.+++-..- -.-.++++.|-+. ...|++++.-+.+++||.+.+ +++..|.....
T Consensus 169 ke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~ 248 (412)
T KOG3881|consen 169 KENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN 248 (412)
T ss_pred hhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence 77 66999999988665443211 1124678899886 778999999999999999865 57778887888
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+++++...|+++++++|. |.+..||++.++.+.. +.+..+.|+++..+|.+++++++| -|++++|+|+.+.+..
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDIKTRKLL 325 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeecccchhh
Confidence 999999999999999998 8999999999987766 888999999999999999999999 5999999999986533
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-12 Score=125.03 Aligned_cols=185 Identities=18% Similarity=0.279 Sum_probs=139.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec------CC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------ST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~ 159 (630)
..-|++++....|+-+++..|..+..+. -..+.++++..++-..+|++|+.+|.|..||.++...+.++.. |.
T Consensus 145 scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 145 SCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP 223 (703)
T ss_pred CccEEEeecCcceEEEEccccccccccc-cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence 4446777777789999999998875443 4568899999999888999999999999999998776666542 22
Q ss_pred C-----CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeC--CcEEEEEeeCCCeEEEEEc
Q 006808 160 K-----GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 160 ~-----~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~--~~~l~~~~~~d~~i~vwd~ 229 (630)
+ .|+++.|+.+|-.+++|. |.++|||+++.+++..- .+..-+|..+.|.+. +..+++. +.+.++|||-
T Consensus 224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~ 301 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDE 301 (703)
T ss_pred cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhccc
Confidence 2 499999999999999998 99999999998876543 233458999999876 3445543 4678999999
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+++.. ..+..... +.-.|+- |++.+++++..++.+..|=+...
T Consensus 302 ~~Gk~~-----asiEpt~~-lND~C~~-----p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 302 CTGKPM-----ASIEPTSD-LNDFCFV-----PGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ccCCce-----eeccccCC-cCceeee-----cCCceEEEecCCCcceeEEcccc
Confidence 998744 22222333 3334443 88999999999998887766543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-12 Score=117.46 Aligned_cols=252 Identities=15% Similarity=0.189 Sum_probs=163.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCC-c----EEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKG-Q----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~-~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
++.|..+|.+||+|..+|+|.+|.-... + ....++.|...-.-+ ........+..+.|++...
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYL------kSleieEKinkIrw~~~~n------ 97 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYL------KSLEIEEKINKIRWLDDGN------ 97 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchh------hhhhhhhhhhhceecCCCC------
Confidence 4589999999999999999999964322 2 334444443322110 0112244677888988764
Q ss_pred CCcEEEEEeCCCeEEEEEccCCee-----------------------------------eEEccCCCCCCEEEEEEecCC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQL-----------------------------------KWRLSDCHPGGVSAISFATHG 129 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~-----------------------------------~~~~~~~h~~~v~~~~~s~~g 129 (630)
...+++.+.+.+|++|.+..... ...+..+|+.-|.++.++.|+
T Consensus 98 -~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 98 -LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred -ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 66788889999999998854221 112234788889999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCce---eEEeecC-----CCCeEEEEEccCC-CEE-EEeC-CeEEEEECCCCcee----eE
Q 006808 130 SCIYSAGADGMVCEIDPLTGSL---LGKFRAS-----TKGISCMAVSSDG-KML-ATAA-GQLKTFNCSDHKKM----QK 194 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~-----~~~v~~l~~~p~~-~~l-~~~~-g~i~lwd~~~~~~~----~~ 194 (630)
..++++ .|-.|.+|++.--.. +.-++.+ ..-|++..|+|.. ..+ .+.+ |+|++.|++..... +.
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 998887 677899999864322 2223333 2367889999943 333 3444 99999999854211 11
Q ss_pred e------------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-----------CCce---
Q 006808 195 F------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------HPAV--- 248 (630)
Q Consensus 195 ~------------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~--- 248 (630)
| ..--..|..+.|+++|+|+++-. =-+|++||+.....+. ...+.. ....
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~pv--~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKPV--ETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCcc--eEEeehHhHHHHHHHHhhccchhh
Confidence 1 11124578899999999998743 2589999996544320 111110 0011
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
-..| +|+ .++.++++|+..+..++|++..|.
T Consensus 332 KFec-~~s-----g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFEC-SWS-----GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEE-EEc-----CCcceEecccccceEEEecCCCCc
Confidence 1122 232 677899999999999999976654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.9e-11 Score=108.04 Aligned_cols=141 Identities=16% Similarity=0.275 Sum_probs=105.3
Q ss_pred EeCCCeEEEEEccCC-eeeEEccC-CCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCce--eEEeecCCCCeEEEE
Q 006808 92 GTGGGDVLALAVSAG-QLKWRLSD-CHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSL--LGKFRASTKGISCMA 166 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~-~~~~~~~~-~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~l~ 166 (630)
.-..+.|+||..... +.+..+.. ....+..+++-+.+...|+. |-.-|.|++-|+...+. ...+.+|...|.|++
T Consensus 109 vvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~ 188 (346)
T KOG2111|consen 109 VVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVA 188 (346)
T ss_pred EEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEE
Confidence 334567999988743 33322221 22344555544434444444 34568999999986655 467899999999999
Q ss_pred EccCCCEEEEeC--C-eEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 167 VSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 167 ~~p~~~~l~~~~--g-~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+-+|..+|+++ | -|+|||..+|..+..+... ...|.+++|||++.+|++++ +.|+++|+.++...
T Consensus 189 Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 189 LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE 259 (346)
T ss_pred EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence 999999999999 6 6799999999999998633 35799999999999999887 78999999987644
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-12 Score=119.89 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=138.4
Q ss_pred CcEEEEEeCCCeEEEEEccC------CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC-
Q 006808 86 SSLLVLGTGGGDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS- 158 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~- 158 (630)
+.+|++|+.|..+++|++.. .+.+...-..|.+.|.|++|...+.++++|+.+++|...|+.+.+.+..+...
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~ 147 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENN 147 (609)
T ss_pred CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccC
Confidence 78999999999999999853 34443444457789999999998899999999999999999999988887633
Q ss_pred -CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEe--ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 159 -TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 159 -~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~--~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+.|+.+..+|..+.+++.+ +.|.+||.+..+ .+..+ .........+-|+|....|+...+..+-+.+||.+..
T Consensus 148 ~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 148 NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 24899999999877777776 899999998765 22222 2234466788999987666555556778999999886
Q ss_pred ccccc--eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 233 KKQSA--SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 233 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
..... ...+.++.....+....|+ |+|..+.+.-....-.+||+.+.
T Consensus 228 ~~~~~~~~~~~~L~~~~~~~M~~~~~-----~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 228 ARPVYQRSMFKGLPQENTEWMGSLWS-----PSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred cchHHhhhccccCcccchhhhheeeC-----CCCCeehhhhccCCCEEeeeecc
Confidence 54311 1112222222233334454 88888877666555566776443
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=116.29 Aligned_cols=190 Identities=11% Similarity=0.122 Sum_probs=139.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCee----eEEccCCCCCCEEEEEEecCCCE-EEEEeCC--CcEEEEeCCCCceeEEeecC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSC-IYSAGAD--GMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~----~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~d--g~v~iwd~~~~~~~~~~~~~ 158 (630)
...|++|..+|.+.+|....+.. +..+ .-..++..+.-++...+ +++||.. ..+.+||+...+.+..-+..
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 67799999999999999985431 1122 12256777777775555 4558877 78999999887554332211
Q ss_pred C---------CCeEEEEEccC--CCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 159 T---------KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 159 ~---------~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
. -.++.+.|-|. ...|+++. +.+++||.+.++ ++..|.--..+++++...|.+++++++. .-+.+
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l 271 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQL 271 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchh
Confidence 1 24578889887 78888888 899999998764 6788887788999999999999999987 58899
Q ss_pred EEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
..||++.++... | ..-+..+.+..+.+. |.+.++++++-|..++|+|+++.+.+
T Consensus 272 ~~FD~r~~kl~g--~-~~kg~tGsirsih~h------p~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 272 AKFDLRGGKLLG--C-GLKGITGSIRSIHCH------PTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred heecccCceeec--c-ccCCccCCcceEEEc------CCCceEEeeccceeEEEeecccchhh
Confidence 999999987551 1 111222333333333 78899999999999999999885443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-11 Score=125.87 Aligned_cols=235 Identities=9% Similarity=-0.026 Sum_probs=146.1
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe---CCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.+||....... .+. .+...+.+.+|+|||+.|+..+ .+..+.+|++.+++.... ....+.+..++|+|||+.
T Consensus 180 ~l~~~d~dg~~~~-~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCE-Eee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 5889998766543 232 3567899999999999887654 345799999988864332 223334557899999998
Q ss_pred EEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe--EEEEEcCCCccccceeeeeecCC
Q 006808 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+... | .|++||+.+++.. .+..+...+....|+|+|+.|+.++..++. |+++++.++... ... ..
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt--~~ 329 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RIT--WE 329 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----Eee--cC
Confidence 88653 3 6999999887654 344445567889999999998887643444 555566655422 111 11
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecC---CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 323 (630)
........++ |+|++|+..+.+ ..|++||+.++.... ..... ......++|+++ .|+.++.++..
T Consensus 330 ~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG~----~i~~~s~~~~~ 397 (429)
T PRK03629 330 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNGT----MVIYSSSQGMG 397 (429)
T ss_pred CCCccCEEEC-----CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCC--CCCCceECCCCC----EEEEEEcCCCc
Confidence 1222344555 999999887653 358889988775322 11111 011223678887 77777765421
Q ss_pred cCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC
Q 006808 324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (630)
..+.+.. ........+..|.+.+...+|||
T Consensus 398 ----~~l~~~~--~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 398 ----SVLNLVS--TDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ----eEEEEEE--CCCCCeEECccCCCCcCCcccCC
Confidence 1111111 11222334556777788888887
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=127.31 Aligned_cols=206 Identities=19% Similarity=0.354 Sum_probs=146.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++-|+++ .|+.+|.+||+||.|-++.|||.-..+.++.+.. ||+. .+.|+.|.|...
T Consensus 50 ~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T----------------gHta-NIFsvKFvP~tn---- 106 (758)
T KOG1310|consen 50 TGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSIST----------------GHTA-NIFSVKFVPYTN---- 106 (758)
T ss_pred cceecce--eecCCCCEEeecCCcceEEeecchhcceeeeeec----------------cccc-ceeEEeeeccCC----
Confidence 4567444 9999999999999999999999988888877642 5543 455666666553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC---------eeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCcee
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~---------~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
..++++|.+|..|++||+... +........|...|.-++..|++ +.|++++.||+++-+|++....-
T Consensus 107 ---nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 107 ---NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred ---CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 678999999999999999852 22223445788999999999988 67999999999999999863211
Q ss_pred ----------EEeecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCC--------Cc----------eeeEe-ecCC-
Q 006808 153 ----------GKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD--------HK----------KMQKF-SGHP- 199 (630)
Q Consensus 153 ----------~~~~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~--------~~----------~~~~~-~~h~- 199 (630)
..+...--...|+.++|.. .+|++|+ --.++||.+. +. ++.-| ++|.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 1111112356899999954 5667776 4778999431 11 22222 2332
Q ss_pred ---C-------CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 200 ---G-------AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 200 ---~-------~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+ -++-+.|+|+|.-|++.- ..-.|+++|+..++..
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSP 308 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCc
Confidence 1 156678999998777754 3558999999887744
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-12 Score=114.40 Aligned_cols=206 Identities=9% Similarity=0.065 Sum_probs=152.3
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEE
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC 142 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~ 142 (630)
...++|.+|++. ...++++..+..|.||....... ....+..|...|+++.|+|..+.|++|+.|..-+
T Consensus 10 ~~pitchAwn~d---------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 10 LEPITCHAWNSD---------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred cCceeeeeecCC---------CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 346889999886 67799999999999999887762 3344467999999999999999999999999999
Q ss_pred EEeCCCC---ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee---e-EeecCCCCeEEEEEeeCCcE
Q 006808 143 EIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM---Q-KFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 143 iwd~~~~---~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~---~-~~~~h~~~v~~l~~sp~~~~ 213 (630)
+|....+ ++.-.+..+...++++.|+|.++.+|+|+ ..|.||-++...-- + .-+.+...|+++.|+|++-.
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 9998433 34444556788999999999999999998 57777776543211 1 11345678999999999988
Q ss_pred EEEEeeCCCeEEEEEcCCCc------cccce-------eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 214 VLSSAVGERYIALWRTDGVK------KQSAS-------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
|++++ .|+..+|+...-.. ..+.. .+.........+..+.|+ |+|..|+-.+.|..+.+=|
T Consensus 161 laaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 161 LAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEee
Confidence 88877 69999999753211 00000 011121233445556666 9999999999999999988
Q ss_pred cCCcc
Q 006808 281 GQNIE 285 (630)
Q Consensus 281 ~~~~~ 285 (630)
.....
T Consensus 235 a~~p~ 239 (361)
T KOG1523|consen 235 AAGPS 239 (361)
T ss_pred cCCCc
Confidence 65543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-11 Score=123.50 Aligned_cols=214 Identities=17% Similarity=0.169 Sum_probs=138.2
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC---CCeEEEEEc
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---GGDVLALAV 103 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---~g~v~iwd~ 103 (630)
..|.+||... .....+..+...+. ...|.|. ++.|+..+. +..|++||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~------------------~p~wSpD---------G~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVL------------------TPRFSPN---------RQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeE------------------eeEECCC---------CCEEEEEEecCCCCEEEEEEC
Confidence 3688888754 33344443333333 4445543 555665543 356999999
Q ss_pred cCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCc--EEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--
Q 006808 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (630)
Q Consensus 104 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-- 178 (630)
.+++.. .+ ..+.+.+.+.+|+|||+.|+ +.+.++. |++||+.+++.. .+..+........|+|||+.|+.++
T Consensus 234 ~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 234 ETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred CCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECC
Confidence 988764 22 24566788999999999865 5555554 777898877653 4554555667899999999888765
Q ss_pred ---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCCccccceeeeeecCCceeeeeE
Q 006808 179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 179 ---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (630)
..|++||+.++.. ..+..+...+....|+|+|++++..+... ..|.+|++..+... ... ... .....
T Consensus 311 ~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----~lt--~~~-~~~~p 382 (435)
T PRK05137 311 SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----ILT--SGF-LVEGP 382 (435)
T ss_pred CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE----ecc--CCC-CCCCC
Confidence 2789999876654 34443455667789999999998876322 36888887654322 111 111 12334
Q ss_pred EecCCccCCCCCEEEEEecC------CcEEEEEcCCc
Q 006808 254 CIDNGGVDDAGLYVLAISET------GVCYIWYGQNI 284 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~ 284 (630)
.|+ |||++|+..+.+ ..++++++..+
T Consensus 383 ~~s-----pDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 383 TWA-----PNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEC-----CCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 454 999998776543 25777777544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-11 Score=123.22 Aligned_cols=213 Identities=14% Similarity=0.091 Sum_probs=136.2
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC---CeEEEEEc
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV 103 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~v~iwd~ 103 (630)
.+|.+||... .....+..+...+....|+|+ ++.|+..+.. ..|++||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpD---------------------------g~~la~~s~~~~~~~l~~~dl 235 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPD---------------------------GKKLAYVSFERGRSAIYVQDL 235 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCC---------------------------CCEEEEEecCCCCcEEEEEEC
Confidence 3688999854 333444444333444444444 5566666533 45999999
Q ss_pred cCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCC--cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--
Q 006808 104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-- 178 (630)
Q Consensus 104 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-- 178 (630)
.+++... + ..+.+...++.|+|+|+.++ +.+.+| .|++||+.+++.. .+..+.......+|+|+|+.|+.++
T Consensus 236 ~~g~~~~-l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 236 ATGQREL-V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CCCCEEE-e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence 8887642 2 13344556889999999765 455555 5999999888754 4444545556789999999888766
Q ss_pred -C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCCceeeeeE
Q 006808 179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 179 -g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (630)
| .|+++++.+++.. .+..+......++|+|+|++++..+..++ .|.+|++.+++.. . +.+.... ...
T Consensus 313 ~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~----~--Lt~~~~~-~~p 384 (433)
T PRK04922 313 GGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR----T--LTPGSLD-ESP 384 (433)
T ss_pred CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE----E--CCCCCCC-CCc
Confidence 3 5888888776543 33323344557899999999988653332 6999999876532 1 1121111 223
Q ss_pred EecCCccCCCCCEEEEEecC---CcEEEEEcCC
Q 006808 254 CIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~ 283 (630)
.|+ |+|++|+..+.+ +.|++++...
T Consensus 385 ~~s-----pdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 385 SFA-----PNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred eEC-----CCCCEEEEEEecCCceEEEEEECCC
Confidence 454 999988877663 3577777743
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-11 Score=120.87 Aligned_cols=192 Identities=18% Similarity=0.222 Sum_probs=132.2
Q ss_pred CcEEE-EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 86 SSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 86 ~~~l~-~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+++++ +-..+|.|.+.|..+.+.+.++..++ ..-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34454 45567999999999999888875433 234567899999999999999999999999999999998644 4688
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceeeEeecC-------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
++++|||+++++++ +.+.++|.++.+.++.++.. ...+.++..+|....++++-.+-+.|.+.|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999887 89999999999988887533 346778888898886766654457888888776543
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCccccc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELR 288 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~ 288 (630)
. ....+.. .....-..+. |++++++++ ..++.|-++|.++++.+.
T Consensus 163 ~---~~~~i~~-g~~~~D~~~d-----pdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 163 L---KVTTIKV-GRFPHDGGFD-----PDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp E---EEEEEE---TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred c---ceeeecc-cccccccccC-----cccceeeecccccceeEEEeeccceEEE
Confidence 3 1222222 2222234555 899987665 457789999998876654
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.9e-13 Score=127.43 Aligned_cols=274 Identities=11% Similarity=0.086 Sum_probs=189.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCC-Ccee--EEeecCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLT-GSLL--GKFRASTK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~-~~~~--~~~~~~~~ 160 (630)
+..+++|+.+..|.+||...+.....+..+|...|..-.|-| +...+++++.||.|++=.+.. +.+. ..+..|.+
T Consensus 154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g 233 (559)
T KOG1334|consen 154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG 233 (559)
T ss_pred CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence 889999999999999999999998899999999999999988 345699999999999887643 3332 33566889
Q ss_pred CeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEee---cCCC---CeEEEEEeeCCc-EEEEEeeCCCeEEEEEcC
Q 006808 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS---GHPG---AVRFMTFSDNGK-YVLSSAVGERYIALWRTD 230 (630)
Q Consensus 161 ~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~~---~h~~---~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~ 230 (630)
+|+.++.-|+.. -|.+++ +.+.-+|++.+.+-..+. .+.. ....++..|... ++++++ .|..+++||.+
T Consensus 234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R 312 (559)
T KOG1334|consen 234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG-SDQFARVYDQR 312 (559)
T ss_pred ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC-hhhhhhhhccc
Confidence 999999999654 455555 788889998876543332 2223 466788888776 566666 69999999987
Q ss_pred CCcccc------ceee-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc------------ccc-c
Q 006808 231 GVKKQS------ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE------------LRN-T 290 (630)
Q Consensus 231 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------------~~~-~ 290 (630)
.-.... ..|. .........|.++.++ .++.-|++.-.|-.|++|.-.-+.. ++. +
T Consensus 313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY 387 (559)
T KOG1334|consen 313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY 387 (559)
T ss_pred chhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence 644320 0010 0111334456777776 6777777878888999995221111 011 1
Q ss_pred Cce--eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccc
Q 006808 291 KAT--KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ 368 (630)
Q Consensus 291 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~ 368 (630)
+.+ ...+....+|.|... ++++|+-+|+|.+|+. .....+.-+.+...-|.|+.-+|--..| +|+
T Consensus 388 KGHrN~~TVKgVNFfGPrsE----yVvSGSDCGhIFiW~K--------~t~eii~~MegDr~VVNCLEpHP~~PvL-AsS 454 (559)
T KOG1334|consen 388 KGHRNSRTVKGVNFFGPRSE----YVVSGSDCGHIFIWDK--------KTGEIIRFMEGDRHVVNCLEPHPHLPVL-ASS 454 (559)
T ss_pred cccccccccceeeeccCccc----eEEecCccceEEEEec--------chhHHHHHhhcccceEeccCCCCCCchh-hcc
Confidence 111 123444556777766 9999998777766442 1222222333444478999999998999 999
Q ss_pred cceeccccce
Q 006808 369 SLLKSKRGRY 378 (630)
Q Consensus 369 s~d~~~~~w~ 378 (630)
+.|..||+|.
T Consensus 455 Gid~DVKIWT 464 (559)
T KOG1334|consen 455 GIDHDVKIWT 464 (559)
T ss_pred CCccceeeec
Confidence 9999999995
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-11 Score=123.30 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=126.2
Q ss_pred eEeEECCCCCEEEEeeC---CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 9 ILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
.+.+|||||+.||..+. +..|.+|++.+|+.... .... ++ .....|.|.
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~--------------~~----~~~~~~SPD--------- 253 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP--------------RH----NGAPAFSPD--------- 253 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCC--------------CC----cCCeEECCC---------
Confidence 56799999999987653 45799999988764332 1111 11 113455554
Q ss_pred CcEEEE-EeCCC--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-C--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVL-GTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~-~~~~g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~ 159 (630)
+..|+. .+.+| .|++||+.++... .+. .+...+....|+|+|+.|+.++.+ + .|..+|+.+++.. .+....
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~-~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~ 330 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG 330 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEE-Ecc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC
Confidence 554554 34455 4999999988764 333 344567899999999988766643 4 4555577666543 334344
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC---eEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~---~i~vwd~~~ 231 (630)
.......|+|+|++++..+ ..|++||+.++.. ..+.. ........|+|||++++.++. ++ .+.++++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~-~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSS-QGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEc-CCCceEEEEEECCC
Confidence 4566789999999988765 3689999988764 33432 223346789999999998874 54 367777755
Q ss_pred Cc
Q 006808 232 VK 233 (630)
Q Consensus 232 ~~ 233 (630)
..
T Consensus 408 ~~ 409 (429)
T PRK03629 408 RF 409 (429)
T ss_pred CC
Confidence 43
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-11 Score=123.64 Aligned_cols=202 Identities=18% Similarity=0.163 Sum_probs=126.5
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.++|....... .+. .+...+.+.+|+|||+.|+..+.. ..|.+||+.+++... +....+.+.+.+|+|||+.
T Consensus 177 ~L~~~D~dG~~~~-~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 177 QLQISDADGQNAQ-SAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred EEEEECCCCCCce-Eec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4777787543332 333 467789999999999998876642 359999999887643 3333455678999999998
Q ss_pred EEEe-C--C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc--CCCccccceeeeeecCC
Q 006808 174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~-~--g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~ 246 (630)
|+.. + | .|+++|+.++. ...+..+........|+|||++++.++..++...+|.+ .++... .+ ... .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---~l-t~~-g 327 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---RV-TFT-G 327 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE---EE-ecC-C
Confidence 8754 3 4 46666766554 44555565566778999999998877644555666654 343321 11 111 1
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
. ......|+ |+|++|+..+.++ .|++||+.+++...-... . ......++|+++ .|+.++.+
T Consensus 328 ~-~~~~~~~S-----pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~--~~~~p~~spdg~----~l~~~~~~ 391 (427)
T PRK02889 328 S-YNTSPRIS-----PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-T--RDESPSFAPNGR----YILYATQQ 391 (427)
T ss_pred C-CcCceEEC-----CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-C--CccCceECCCCC----EEEEEEec
Confidence 1 11223455 9999998877654 699999887753221111 0 011223677776 56555543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-11 Score=110.30 Aligned_cols=154 Identities=15% Similarity=0.216 Sum_probs=106.5
Q ss_pred EEEEEecCCCEEEEEeC----------CCcEEEEeCCC-CceeEEeec-CCCCeEEEEEccCCCEEEEeC----CeEEEE
Q 006808 121 SAISFATHGSCIYSAGA----------DGMVCEIDPLT-GSLLGKFRA-STKGISCMAVSSDGKMLATAA----GQLKTF 184 (630)
Q Consensus 121 ~~~~~s~~g~~l~s~~~----------dg~v~iwd~~~-~~~~~~~~~-~~~~v~~l~~~p~~~~l~~~~----g~i~lw 184 (630)
..+.|+|+|.+|+.-.. -+...+|-++. +.....+.. ..++|.+++|+|+|..+++.. +.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46778888887554322 12344554422 233444443 345799999999999877653 589999
Q ss_pred ECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC--CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC
Q 006808 185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262 (630)
Q Consensus 185 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (630)
|++ ++.+..+. ...+..+.|+|+|+++++++.. .|.|.+||..+.+. +....+.. ...+.|+ |
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~~~~--~t~~~Ws-----P 153 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFEHSD--ATDVEWS-----P 153 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccccCc--EEEEEEc-----C
Confidence 996 66666664 5677899999999999998743 36799999996653 33444433 3455666 9
Q ss_pred CCCEEEEEec------CCcEEEEEcCCccccccc
Q 006808 263 AGLYVLAISE------TGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 263 ~~~~l~s~s~------dg~i~iwd~~~~~~~~~~ 290 (630)
+|+++++++. |+.++||+. +|+.+...
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 9999999875 788999997 46665443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-11 Score=124.38 Aligned_cols=175 Identities=10% Similarity=0.060 Sum_probs=119.9
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.+||....... .+. .+...+.+.+|+|+|+.|+.++. ...|++||+.+++... +....+...++.|+|+|+.
T Consensus 185 ~l~i~D~~g~~~~-~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQ-TIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCce-Eee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4889998655443 333 46678999999999999887763 3469999998886543 3333445567899999998
Q ss_pred EEEe-C----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe--EEEEEcCCCccccceeeeeecCC
Q 006808 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~-~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+.. + ..|++||+.+++. ..+..+.......+|+|+|++|+.++..++. |+++++.+++.. .+ ... .
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~l-t~~-g 335 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---RL-TFQ-G 335 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---Ee-ecC-C
Confidence 7654 2 3799999988764 4455565556778999999999887644444 666777665422 11 111 1
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcCCccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEE 286 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~ 286 (630)
.......|+ |+|++|+..+.++ .|.+||+.+++.
T Consensus 336 -~~~~~~~~S-----pDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 336 -NYNARASVS-----PDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -CCccCEEEC-----CCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 112234555 9999998876543 699999877754
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=125.66 Aligned_cols=212 Identities=14% Similarity=0.251 Sum_probs=150.6
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCC
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADG 139 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg 139 (630)
||.+ -+.|+.|... |.+|++|+.|-.+.|||+-..+.+..+..+|...|.++.|-| +.+.+++|..|.
T Consensus 48 GH~G-CVN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 48 GHTG-CVNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred cccc-eecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 5543 5668888776 899999999999999999998988888889999999999998 456789999999
Q ss_pred cEEEEeCCCC----------ceeEEeecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCCCceee----------Eee
Q 006808 140 MVCEIDPLTG----------SLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQ----------KFS 196 (630)
Q Consensus 140 ~v~iwd~~~~----------~~~~~~~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~~~~~~----------~~~ 196 (630)
.|+++|+... .....+..|...|..++..|++ ..+.+++ |+|+-+|++...... .+.
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence 9999999842 3445577788899999999988 6677777 999999998643111 111
Q ss_pred cCCCCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCccc-------------cceeeeee--cCC----------ceee
Q 006808 197 GHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQ-------------SASCVLAM--EHP----------AVFM 250 (630)
Q Consensus 197 ~h~~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~-------------~~~~~~~~--~~~----------~~~~ 250 (630)
..--...++.++|... +|++++ .|-..++||.+...+. ...|+..+ .|. ....
T Consensus 198 ~~lielk~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred hhhheeeeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 1123467889999765 566666 5899999995332110 01111111 111 1123
Q ss_pred eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
+.+.|+ |+|.-|+..-..-.|++||+..++....
T Consensus 277 t~vtfn-----pNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 277 TYVTFN-----PNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEEEEC-----CCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 444555 9987777665556899999987765443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-09 Score=109.88 Aligned_cols=242 Identities=15% Similarity=0.209 Sum_probs=150.1
Q ss_pred eEECCCCCEEEEeeC----CCcEEEEECCC--CcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 11 TSFSPALDYFAICSG----DARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 11 ~~fs~dg~~las~s~----dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
++++|++++|.++.. +|.|..|.+.. +.+.. +.... ......+.++..+.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~-~~~~~---------------~~g~~p~~i~~~~~-------- 97 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL-LNSVP---------------SGGSSPCHIAVDPD-------- 97 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE-EEEEE---------------ESSSCEEEEEECTT--------
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE-eeeec---------------cCCCCcEEEEEecC--------
Confidence 489999999988876 57888888765 33322 21100 00111122222222
Q ss_pred CCcEEEEEe-CCCeEEEEEccC-CeeeEE--cc----------CCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCC
Q 006808 85 GSSLLVLGT-GGGDVLALAVSA-GQLKWR--LS----------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG 149 (630)
Q Consensus 85 ~~~~l~~~~-~~g~v~iwd~~~-~~~~~~--~~----------~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~ 149 (630)
+.+|+++. .+|.|.++++.. +..... .. ........++.|+|+|++++++. ....|.+|++...
T Consensus 98 -g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 98 -GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp -SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred -CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 66677766 578899999987 333211 11 11234578999999999988775 3447999998765
Q ss_pred c--e--eEEeec-CCCCeEEEEEccCCCEEEEeC---CeEEEEECC--CCc--eeeEeec----C--CCCeEEEEEeeCC
Q 006808 150 S--L--LGKFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHK--KMQKFSG----H--PGAVRFMTFSDNG 211 (630)
Q Consensus 150 ~--~--~~~~~~-~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~--~~~--~~~~~~~----h--~~~v~~l~~sp~~ 211 (630)
. . ...+.. .......++|+|+++++.+.. ++|.+|++. ++. .+..+.. . ......|.++|+|
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC
Confidence 4 3 222332 344779999999999988876 799999887 443 2222221 1 1257889999999
Q ss_pred cEEEEEeeCCCeEEEEEcCC--CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEc--CCcc
Q 006808 212 KYVLSSAVGERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYG--QNIE 285 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~--~~~~ 285 (630)
++|+++....+.|.+|++.. +... .+..........+.+.++ |+|++|++++. ++.|.+|++ .+|.
T Consensus 257 ~~lyvsnr~~~sI~vf~~d~~~g~l~---~~~~~~~~G~~Pr~~~~s-----~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 257 RFLYVSNRGSNSISVFDLDPATGTLT---LVQTVPTGGKFPRHFAFS-----PDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp SEEEEEECTTTEEEEEEECTTTTTEE---EEEEEEESSSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CEEEEEeccCCEEEEEEEecCCCceE---EEEEEeCCCCCccEEEEe-----CCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 99999887788999999943 3322 222222223334555665 99999998875 668999975 4554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=121.37 Aligned_cols=195 Identities=15% Similarity=0.154 Sum_probs=130.5
Q ss_pred cccceeEeEECCCCCEEEEeeC---CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++ .+.+|||||+.||..+. +..|.+||+.++.... +....+.+. ...|.|.
T Consensus 202 ~~v--~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~------------------~~~~SPD---- 256 (435)
T PRK05137 202 SLV--LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTF------------------APRFSPD---- 256 (435)
T ss_pred CCe--EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCccc------------------CcEECCC----
Confidence 356 56699999999998764 4689999998886532 322222222 3345443
Q ss_pred ccccCCcEE-EEEeCCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CC--cEEEEeCCCCceeEE
Q 006808 81 KRKLGSSLL-VLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGK 154 (630)
Q Consensus 81 ~~~~~~~~l-~~~~~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg--~v~iwd~~~~~~~~~ 154 (630)
+..| ++.+.+|. |++||+.++... .+. .+........|+|||+.|+.++. +| .|++||+..++.. .
T Consensus 257 -----G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~ 328 (435)
T PRK05137 257 -----GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-R 328 (435)
T ss_pred -----CCEEEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-E
Confidence 4444 45555555 888899887764 343 45566778999999998876653 33 6888898766543 3
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC-----CeE
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYI 224 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d-----~~i 224 (630)
+..+...+....|+|+|+.|+... ..|.+||+.++. ...+. ....+..+.|+|||+.++..+... ..|
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L 406 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL 406 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceE
Confidence 433445567789999999998765 268889986554 33333 223467889999999988765322 257
Q ss_pred EEEEcCCCc
Q 006808 225 ALWRTDGVK 233 (630)
Q Consensus 225 ~vwd~~~~~ 233 (630)
.++++..+.
T Consensus 407 ~~~dl~g~~ 415 (435)
T PRK05137 407 YTVDLTGRN 415 (435)
T ss_pred EEEECCCCc
Confidence 777876654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.6e-11 Score=129.56 Aligned_cols=266 Identities=12% Similarity=0.061 Sum_probs=159.4
Q ss_pred EEccCCeeeEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCC-------CceeEEeecCCCCeEEEEEccCCC
Q 006808 101 LAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 101 wd~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
|+++ |..+..+ ..|+..|..++.++. +.+|++||.||+|++|+++. .+...++......+.++...+.+.
T Consensus 1034 W~p~-G~lVAhL-~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPR-GILVAHL-HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCcc-ceEeehh-hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 4443 4455444 468888989988774 48999999999999999863 234445555567899999999999
Q ss_pred EEEEeC--CeEEEEECCCC--c-----eeeEeecC-CCCeEE-EEEeeC-Cc-EEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 173 MLATAA--GQLKTFNCSDH--K-----KMQKFSGH-PGAVRF-MTFSDN-GK-YVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 173 ~l~~~~--g~i~lwd~~~~--~-----~~~~~~~h-~~~v~~-l~~sp~-~~-~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+|+++ |.|++.++... + +.+....+ .+.+.+ -+|... +. .++.+. .-+.|..||++..... .
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T-~~~~iv~~D~r~~~~~---w 1187 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT-DLSRIVSWDTRMRHDA---W 1187 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEE-eccceEEecchhhhhH---H
Confidence 999998 99999988652 1 11111222 223333 344332 23 444444 5788999999987644 3
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee---ccCCCcccccchhhhhhh
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS---SEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~ 316 (630)
..........++..+.+ |.+.+++.|+..|.+.+||++-+..+.....+..+.. +...+.+.. ...+.+
T Consensus 1188 ~lk~~~~hG~vTSi~id-----p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~---S~~vs~ 1259 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVID-----PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQE---SVSVSA 1259 (1431)
T ss_pred hhhcCccccceeEEEec-----CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCC---ceEEEe
Confidence 33444444556677776 8899999999999999999988877765443221111 111122211 113334
Q ss_pred cc-ccccccCCc------eeEEEEE-cCccCceeeEEe----ccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 317 AK-LQDIVKPAS------VHTFVAY-GLLLKPSFQKIL----VNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 317 ~~-~d~~~~~~~------~~~~~~~-g~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
++ ..+-+..|+ ..++.+. +......+.... .+.-....+.+..-+.++ .+|+.|..||.|+...
T Consensus 1260 ~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~-ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFL-LTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCcee-eecCCccceeeccCCC
Confidence 43 333333332 1111111 111111111111 233344445555555566 7888899999999754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-10 Score=118.72 Aligned_cols=173 Identities=14% Similarity=0.113 Sum_probs=109.7
Q ss_pred CcEEEEEeC-C--CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEE--eCCCCceeEEeecCC
Q 006808 86 SSLLVLGTG-G--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEI--DPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~-~--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iw--d~~~~~~~~~~~~~~ 159 (630)
++.|+..+. + ..|.+||+.+++... +. ...+.+.+..|+|||+.|+ +.+.+|...+| |+..+. ...+..+.
T Consensus 207 G~~la~~s~~~~~~~I~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~ 283 (427)
T PRK02889 207 GTKLAYVSFESKKPVVYVHDLATGRRRV-VA-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS 283 (427)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCCEEE-ee-cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence 555666553 2 359999999887642 21 2335567899999999876 56677776665 454444 44555455
Q ss_pred CCeEEEEEccCCCEEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~ 232 (630)
.......|+|||+.|+..+ | .|+.+++.++... .+..+........|+|+|++++.++..++ .|.+||+.++
T Consensus 284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 5567789999999888665 4 4555565555432 22222333456789999999988764332 6999999877
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
... ... .... .....|+ |+|++|+.++.++
T Consensus 363 ~~~----~lt--~~~~-~~~p~~s-----pdg~~l~~~~~~~ 392 (427)
T PRK02889 363 QVT----ALT--DTTR-DESPSFA-----PNGRYILYATQQG 392 (427)
T ss_pred CeE----Ecc--CCCC-ccCceEC-----CCCCEEEEEEecC
Confidence 532 111 1111 1233454 9999988887644
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-13 Score=126.50 Aligned_cols=191 Identities=17% Similarity=0.225 Sum_probs=156.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
|..++.|+..|.|-.+|..++.....+. -...|.++.|-.+..+|+++ ....+++|| ..|..++.++.+ ..|..+
T Consensus 141 GrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~-~~v~rL 215 (545)
T KOG1272|consen 141 GRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRH-IRVARL 215 (545)
T ss_pred ccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhc-Cchhhh
Confidence 8899999999999999999999877764 34678999998777666665 677899999 567777777744 468999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.|-|-.-+|++++ |-++.-|+.+|+.+..+....+.+..++-+|-+..+-++. ..|+|.+|......+. ...+
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh-snGtVSlWSP~skePL----vKiL 290 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH-SNGTVSLWSPNSKEPL----VKIL 290 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC-CCceEEecCCCCcchH----HHHH
Confidence 9999988888887 8999999999999999887888899999999888777777 5999999999887754 2233
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
.|.+ .+..+++. ++|.|++|.+.|..++|||++...++.+...
T Consensus 291 cH~g-~V~siAv~-----~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 291 CHRG-PVSSIAVD-----RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred hcCC-CcceEEEC-----CCCcEEeecccccceeEeeeccccccceeec
Confidence 3444 44556666 8999999999999999999998887665543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-10 Score=103.89 Aligned_cols=234 Identities=14% Similarity=0.214 Sum_probs=148.1
Q ss_pred CCcccceeEeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEeccccccccccccccccccccc----------------
Q 006808 2 GSSNIRDILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL---------------- 64 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---------------- 64 (630)
+++++ .+++|||||+.++ +..-+-+|.||.+.+.+.... +-....+....|.++ |..
T Consensus 90 g~agl--s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~d---g~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 90 GQAGL--SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPD---GQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred CCCcc--eeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCC---CceeeeeecccHHHHHHHH
Confidence 45677 6679999996555 555689999999987665432 111222233344443 211
Q ss_pred --------------ccceeeEEecccccccccccCCcEEEEEeCCCe-EEEEEccCCeeeEEccCCCCCCEEEEEEecCC
Q 006808 65 --------------SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVSAISFATHG 129 (630)
Q Consensus 65 --------------~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~-v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g 129 (630)
..+.+.+.|.| ||. +.+||..-.-.+..+ .-.-++..+.|+|.+
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsP-------------------dg~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSP-------------------DGNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCN 222 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECC-------------------CCcEEEEecchhhheeeee--eeccceeEEEecccc
Confidence 11222233333 233 556764433222222 122578999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEe------------------------------------------------------
Q 006808 130 SCIYSAGADGMVCEIDPLTGSLLGKF------------------------------------------------------ 155 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~~~~~~------------------------------------------------------ 155 (630)
++++.|+.|+.+++.+--+.+....|
T Consensus 223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP 302 (447)
T ss_pred ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence 99999999999888653322211111
Q ss_pred ------e------cCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 156 ------R------ASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 156 ------~------~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+ ...-.+.-++|++|..++++-. +.+.+||+++.+....+. ...+|....|.|....|+.+.
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct- 380 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT- 380 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc-
Confidence 0 0112466789999999999876 689999998876544443 567899999999988888776
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
+...+++|...... ++ ..+.++..+..+.+. .+|.+++.++.|..
T Consensus 381 g~srLY~W~psg~~-----~V-~vP~~GF~i~~l~W~-----~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 381 GKSRLYFWAPSGPR-----VV-GVPKKGFNIQKLQWL-----QPGEFIVLCGKDAF 425 (447)
T ss_pred CCceEEEEcCCCce-----EE-ecCCCCceeeeEEec-----CCCcEEEEEcCCce
Confidence 46679999887643 22 233344455555555 67888888888864
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-09 Score=106.04 Aligned_cols=277 Identities=15% Similarity=0.180 Sum_probs=162.9
Q ss_pred EEEEeCC----CeEEEEEc--cCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----CCcEEEEeCCCC--c--eeEE
Q 006808 89 LVLGTGG----GDVLALAV--SAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTG--S--LLGK 154 (630)
Q Consensus 89 l~~~~~~----g~v~iwd~--~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----dg~v~iwd~~~~--~--~~~~ 154 (630)
+++|+.. +.|.+|++ .+++....-...-......++++|++++|+++.. ++.|..|.+... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556655 56888887 5555421111123345678899999999999876 568988887653 3 3334
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCC-CceeeE---ee--c--------CCCCeEEEEEeeCCcEEEEE
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK---FS--G--------HPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~~~~---~~--~--------h~~~v~~l~~sp~~~~l~~~ 217 (630)
..........++++|++++|+++. |.|.++++.. +..... +. + ......++.|+|++++++++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 443445667899999999999986 8999999987 433221 21 0 12357889999999999998
Q ss_pred eeCCCeEEEEEcCCCccc-cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcC--Ccc--cccccC
Q 006808 218 AVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ--NIE--ELRNTK 291 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~--~~~--~~~~~~ 291 (630)
......|.+|++...... ........ ....-.+.+.|+ |+++++.+.++ ++.|.+|++. ++. .+....
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence 766778999999876521 11112222 233344556676 99998877765 7789999887 332 111110
Q ss_pred ce-----eEEeeccCCCcccccchhhhhhhcccc-ccccCCceeEEEEEcC-ccCceeeEEeccCCCcEEEeecCCccee
Q 006808 292 AT-----KILSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLKPSFQKILVNSGEDINLNCSQDGVLL 364 (630)
Q Consensus 292 ~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~g~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (630)
.. .........++|+++ .++++... +.+. ++..... .....++.+...-..-..++++|+|++|
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~----~lyvsnr~~~sI~-----vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGR----FLYVSNRGSNSIS-----VFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSS----EEEEEECTTTEEE-----EEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred eccccccccCCceeEEEecCCC----EEEEEeccCCEEE-----EEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 00 000112223567776 66655543 1111 1111111 1112223332222335889999999999
Q ss_pred eccccceeccccceec
Q 006808 365 PMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 365 ~~s~s~d~~~~~w~~~ 380 (630)
.+++..++.+.++++.
T Consensus 307 ~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 307 YVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 6677677788887763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=108.07 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=92.9
Q ss_pred cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
++++.++....+...+. ..++|+++.|+|+|+-++++. ..+.+||++ +.++..| ..++=+++-|+|.|++++
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEE
Confidence 45555555222322222 367999999999998887776 589999984 5555555 466778999999999999
Q ss_pred EEeeCC--CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec------CCcEEEEEcCCcccc
Q 006808 216 SSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEEL 287 (630)
Q Consensus 216 ~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~ 287 (630)
.+|.++ |.+-|||+.+.+.. ..+... ..+...|+ |||.++++++. |+.++||+. +|..+
T Consensus 328 lAGFGNL~G~mEvwDv~n~K~i-----~~~~a~--~tt~~eW~-----PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l 394 (566)
T KOG2315|consen 328 LAGFGNLPGDMEVWDVPNRKLI-----AKFKAA--NTTVFEWS-----PDGEYFLTATTAPRLRVDNGIKIWHY-TGSLL 394 (566)
T ss_pred EeecCCCCCceEEEeccchhhc-----cccccC--CceEEEEc-----CCCcEEEEEeccccEEecCCeEEEEe-cCcee
Confidence 998643 68999999986533 222222 23345555 99999999876 678999997 55554
Q ss_pred c
Q 006808 288 R 288 (630)
Q Consensus 288 ~ 288 (630)
.
T Consensus 395 ~ 395 (566)
T KOG2315|consen 395 H 395 (566)
T ss_pred e
Confidence 4
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-09 Score=111.50 Aligned_cols=178 Identities=17% Similarity=0.182 Sum_probs=118.2
Q ss_pred CcEEEEEeCC---CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCC--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~~---g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
++.|+.++.. ..|++||+.+++... + ..+.+.+.+++|+|+|+.|+. .+.++ .|++||+.+++.. .+..+.
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~~~-~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~ 277 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQREK-V-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP 277 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence 5666666543 369999999886542 2 235566778999999987764 44444 5889999877543 344344
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC---eEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~---~i~vwd~~~ 231 (630)
.......|+|+|+.|+.++ ..|+++|+.+++. ..+..+...+..+.|+|+|++++.++. ++ .|.+||+.+
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~-~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDG 355 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEc-cCCceEEEEEeCCC
Confidence 4456779999999887665 2788999887764 344445566778899999999988874 44 788899877
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEE
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWY 280 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd 280 (630)
+... .+ ..... .....|+ |+|++|+..+.++ .+++++
T Consensus 356 ~~~~---~l---~~~~~-~~~p~~s-----pdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 356 GGER---VL---TDTGL-DESPSFA-----PNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCeE---Ec---cCCCC-CCCceEC-----CCCCEEEEEEeCCCcEEEEEEE
Confidence 5422 11 11111 1222444 9999988887754 344444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-09 Score=109.25 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=113.3
Q ss_pred EEEeCCC--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CC----cEEEEeCCCC---ceeEEeecCC
Q 006808 90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG----MVCEIDPLTG---SLLGKFRAST 159 (630)
Q Consensus 90 ~~~~~~g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg----~v~iwd~~~~---~~~~~~~~~~ 159 (630)
++...+| .|.+.++.+++.. .+. ...+.....+|+|||+.|+..+. +| .+..|++..+ +..+......
T Consensus 203 y~S~~~g~~~I~~~~l~~g~~~-~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~ 280 (428)
T PRK01029 203 YVSYKLGVPKIFLGSLENPAGK-KIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280 (428)
T ss_pred EEEccCCCceEEEEECCCCCce-Eee-cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence 3444444 4888899887653 222 23445567899999998776542 22 3444776653 3333333222
Q ss_pred CCeEEEEEccCCCEEEEeC---C--eEEEEECCC-CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g--~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~ 231 (630)
......+|+|||+.|+..+ | .|+++++.. +.....+..+...+....|+|||++|+.++..+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3446789999999888765 4 466666642 233444555556677889999999998876433 3699999988
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec---CCcEEEEEcCCccc
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEE 286 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~ 286 (630)
++.. . +. ..........|+ |||++|+..+. .+.|++||+..++.
T Consensus 361 g~~~---~-Lt--~~~~~~~~p~wS-----pDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 361 GRDY---Q-LT--TSPENKESPSWA-----IDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred CCeE---E-cc--CCCCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 7643 1 11 111122334455 89998876543 34688888876643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-08 Score=95.11 Aligned_cols=240 Identities=14% Similarity=0.181 Sum_probs=152.0
Q ss_pred EeEECCCCCEEEEeeC---CCcEEEEECCC--CcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICSG---DARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
-++|+|+++.|.++.. +|.|..|.+.. |.+...-. .. ..|+ ..+.++ .+.+
T Consensus 44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~--~~-----------~~g~---~p~yvs---vd~~----- 99 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR--QT-----------LPGS---PPCYVS---VDED----- 99 (346)
T ss_pred eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec--cc-----------cCCC---CCeEEE---ECCC-----
Confidence 3499999999988864 57788887764 55432110 00 0011 111222 2222
Q ss_pred CCcEEEEEeCC-CeEEEEEccC-CeeeE--EccCCCCCC----------EEEEEEecCCCEEEEEeC-CCcEEEEeCCCC
Q 006808 85 GSSLLVLGTGG-GDVLALAVSA-GQLKW--RLSDCHPGG----------VSAISFATHGSCIYSAGA-DGMVCEIDPLTG 149 (630)
Q Consensus 85 ~~~~l~~~~~~-g~v~iwd~~~-~~~~~--~~~~~h~~~----------v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~ 149 (630)
+++++++... |.|.++-++. |.... .. ..|.++ +....|.|+++++++++. -..|.+|++..|
T Consensus 100 -g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 100 -GRFVFVANYHSGSVSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred -CCEEEEEEccCceEEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 6777777754 7799999866 33211 11 134444 889999999999988852 336999999977
Q ss_pred ceeEE---eecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCC-ceeeEeec---------CCCCeEEEEEeeCCcE
Q 006808 150 SLLGK---FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSG---------HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 150 ~~~~~---~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~-~~~~~~~~---------h~~~v~~l~~sp~~~~ 213 (630)
+.... .-........|.|+|++++..+.. ++|-+|..... ..+..++. .......|..+|+|++
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence 64332 112345678999999999988887 89999988773 22222211 1345678899999999
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-cEEEEEc
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG 281 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~i~iwd~ 281 (630)
|.++......|.+|.+...... ..............+...++ ++|++|+++.+++ .|.+|..
T Consensus 258 LYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~-----~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 258 LYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN-----PSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC-----CCCCEEEEEccCCCcEEEEEE
Confidence 9998766668888887664321 01111222233334444454 8999999998854 6888864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=120.85 Aligned_cols=192 Identities=11% Similarity=0.150 Sum_probs=147.1
Q ss_pred ECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
+.-+...++.+..++.+.+||...+.....+.... ...-++++.|.... . .-++++|
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e----------------r~~l~~~~~~g~s~-~------~~~i~~g 151 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE----------------RCTLYSSLIIGDSA-E------ELYIASG 151 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCc----------------eEEEEeEEEEeccC-c------EEEEEec
Confidence 33455678888888899999998776655443211 11223333332211 1 5678999
Q ss_pred eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE-EeecCCCCeEEEEEccCC
Q 006808 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDG 171 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~~ 171 (630)
+.-+.|.+|++...+... ...+|.+.|.++.|+-+|.+++++|.|.++++|++.+.+... +.-+|...|..++|.|+
T Consensus 152 sv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred cccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence 999999999998444433 446899999999999999999999999999999999987766 55679999999999998
Q ss_pred CEEEEeC--CeEEEEECCCCceeeEeecCCC-CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+++++ -+.++|+. ++..+..+.+|.+ .|..++..++....++++ .|+.+++|++...
T Consensus 230 -~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 -RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNGR 290 (967)
T ss_pred -eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhcc
Confidence 788887 79999975 4555667888864 688999988888888887 7999999998654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=104.03 Aligned_cols=198 Identities=14% Similarity=0.161 Sum_probs=143.3
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
++++.|++.|..++++-.+|.+.+-+...+.... .++.|........|+.. .
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--------------------------~ 177 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--------------------------E 177 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--------------------------C
Confidence 5788999999999999889999865554454443 67777666555444432 1
Q ss_pred CcEEEEEeCCCeEEEEEcc-CCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCC-CCceeEEeecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~-~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v 162 (630)
.+++++|+.||.+..||++ .++.+++-.+-|..+|.+|.-+| .+.++++|+.|-.|++||.+ -++++..-. -.+.|
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGV 256 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGV 256 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccce
Confidence 6789999999999999999 55666665667999999999887 57789999999999999998 466665433 34789
Q ss_pred EEEEEccCC--CEEEEeC-CeEEEEECCCCc-----eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE-EEEcCCC
Q 006808 163 SCMAVSSDG--KMLATAA-GQLKTFNCSDHK-----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA-LWRTDGV 232 (630)
Q Consensus 163 ~~l~~~p~~--~~l~~~~-g~i~lwd~~~~~-----~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~-vwd~~~~ 232 (630)
..+.++|.- ..|+++. +-.+|.+...+. .....+.|.+-+..-.|......|++++..|+.++ +|-.-++
T Consensus 257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 999999943 3444444 556666665442 23345667776777777555567888887888865 7755443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=112.68 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=140.1
Q ss_pred EECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
+++. ...++..|+. ..|+=+++..|..+..|....+.++.+..++. ..+|+
T Consensus 140 ~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------------------hgLla 191 (703)
T KOG2321|consen 140 KYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------------------HGLLA 191 (703)
T ss_pred cccCCCccEEEeecC-cceEEEEccccccccccccccccceeeeecCc---------------------------cceEE
Confidence 4443 3344444443 46777899999998877654444443333322 67899
Q ss_pred EEeCCCeEEEEEccCCeeeEEcc-----CCCCC-----CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLS-----DCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~-----~~h~~-----~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+|+.+|.|..||+++...+..+. ..|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. |..
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~ 270 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGY 270 (703)
T ss_pred ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc-cCC
Confidence 99999999999999876554432 22333 39999999999899999999999999999988875533 433
Q ss_pred --CeEEEEEccC--CCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 161 --GISCMAVSSD--GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 161 --~v~~l~~~p~--~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+|..+.|.+. +..+++.. ..++|||-.+|+....+. .+..+..+++-|++-.++++- .+..+..|=+...
T Consensus 271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~An-e~~~m~~yyiP~L 345 (703)
T KOG2321|consen 271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIPSL 345 (703)
T ss_pred ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEec-CCCcceeEEcccc
Confidence 8999999875 66788888 899999999999887765 455699999999988888776 5666666655443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-09 Score=112.25 Aligned_cols=174 Identities=11% Similarity=0.104 Sum_probs=118.8
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.++|....... .+. .+...+.+.+|+|+|++|+.++.. ..|++||+.+++... +..+...+.+++|+|+|+.
T Consensus 171 ~l~~~d~~g~~~~-~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGANPQ-TIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCCCCE-Eee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 4888887654432 333 456678999999999998877643 479999999886543 3334556677999999987
Q ss_pred EEEe-C----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCC
Q 006808 174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~-~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+.. + ..|++|++.++.. ..+..+........|+|+|++|+.++..++ .|++|++.+++.. .+...
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~ 320 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFR 320 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecC
Confidence 7654 3 3699999987754 344445555567799999999887664333 5788887765422 11111
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcCCcc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE 285 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~ 285 (630)
........++ |+|.+|+.++.++ .|.+||+.++.
T Consensus 321 ~~~~~~~~~s-----pdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 321 GGYNASPSWS-----PDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCccCeEEC-----CCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 1222333455 8999999888765 78889987653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.7e-09 Score=108.44 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=115.9
Q ss_pred CcEEEEEeCC---CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCC--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~~---g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
++.|+..+.. ..|.+|++.+++.. .+. ...+.+....|+|+|+.|+ +.+.+| .|++||+.+++.. .+..+.
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~-~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~ 286 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRRE-QIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP 286 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEE-Ecc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence 5556554433 35999999988754 222 2334556789999999876 444455 6888899887654 344455
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~ 232 (630)
.......|+|+|+.++..+ ..|+++++.+++... +...........|+|+|++++..+..++ .|.+||+.++
T Consensus 287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 5566789999999887665 268888988776432 2212223345789999999988764343 5888898876
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-C--cEEEEEcC
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQ 282 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-g--~i~iwd~~ 282 (630)
... .+. ...... ...|+ |+|++|+..+.+ | .|++++..
T Consensus 366 ~~~----~lt--~~~~~~-~p~~s-----pdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 366 SVR----ILT--DTSLDE-SPSVA-----PNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CEE----Ecc--CCCCCC-CceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence 532 111 111111 22344 999998877653 3 45666653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-09 Score=110.05 Aligned_cols=191 Identities=13% Similarity=0.171 Sum_probs=120.8
Q ss_pred eEeEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 9 ILTSFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
.+.+|||||++|+..+. ++ .|.+||+.+++... +....+. .....|.|.
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~------------------~~~~~wSPD--------- 272 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGI------------------NGAPRFSPD--------- 272 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCC------------------cCCeeECCC---------
Confidence 45699999999998764 23 58888998876532 2111111 113455544
Q ss_pred CcEE-EEEeCCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCC--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLL-VLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l-~~~~~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
++.| ++.+.+|. |++||+.+++.. .+. .+.......+|+|||+.|+..+ .++ .|.++|+.+++... +....
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g 349 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG 349 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence 4444 44566665 888898887654 333 3555667889999999876554 334 56777887776543 22222
Q ss_pred CCeEEEEEccCCCEEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~ 232 (630)
......+|+|+|++|+..+ + .|.++|+.+++.. .+... .......|+|+|+.++.++..++ .+++++....
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2334578999999988765 3 6777898887643 33322 12234589999999888775444 3667776443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-09 Score=110.25 Aligned_cols=175 Identities=12% Similarity=0.058 Sum_probs=117.7
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.++|...+... .+. .+...+....|+|+|+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~~-~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAV-TLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCce-EEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 3778888765543 332 466789999999999998766533 368999998886543 3333344567899999998
Q ss_pred EEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCC
Q 006808 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+... | .|++||+.+++. ..+..+........|+|+|+.++.++..++ .|+++++.+++.. .+ ....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~l-t~~~- 330 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RV-TFVG- 330 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Ee-ecCC-
Confidence 87543 3 799999988764 345555556677899999998887764333 5777787766532 11 1111
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecC-C--cEEEEEcCCccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQNIEE 286 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~ 286 (630)
.......++ |+|++|+..+.+ | .|.+||+.++..
T Consensus 331 -~~~~~~~~S-----pdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 331 -NYNARPRLS-----ADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred -CCccceEEC-----CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 112233455 999999887653 3 588889887643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-08 Score=106.43 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=112.2
Q ss_pred CcEEEEEeC-CC--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCc--EEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGTG-GG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGM--VCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~-~g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~--v~iwd~~~~~~~~~~~~~~ 159 (630)
++.|+..+. ++ .|++||+.+++... +. ...+......|+|||+.|+. .+.+|. |++||+.+++.. .+..+.
T Consensus 229 G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~ 305 (448)
T PRK04792 229 GRKLAYVSFENRKAEIFVQDIYTQVREK-VT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR 305 (448)
T ss_pred CCEEEEEEecCCCcEEEEEECCCCCeEE-ec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence 555555443 33 48999998876532 21 12233457899999998764 455664 788898877653 344444
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~ 232 (630)
......+|+|||+.|+..+ ..|+++|+.+++... +..+.......+|+|+|++++.++..++ .|.++|+.++
T Consensus 306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5567889999999887765 368888988776433 3222223345789999999988765444 4566777766
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CC--cEEEEEc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYG 281 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg--~i~iwd~ 281 (630)
... ...... .. ....|+ |+|++|+..+. +| .+++++.
T Consensus 385 ~~~----~lt~~~--~d-~~ps~s-----pdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 385 AMQ----VLTSTR--LD-ESPSVA-----PNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CeE----EccCCC--CC-CCceEC-----CCCCEEEEEEecCCceEEEEEEC
Confidence 532 111111 11 112344 99998877665 33 3666676
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-08 Score=94.23 Aligned_cols=274 Identities=13% Similarity=0.134 Sum_probs=164.3
Q ss_pred EEEEeCC----CeEEEEEccCCe--eeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCC--Ccee--EEe
Q 006808 89 LVLGTGG----GDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLT--GSLL--GKF 155 (630)
Q Consensus 89 l~~~~~~----g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~--~~~~--~~~ 155 (630)
+++|+.. .-|++|++.+.. .-......+.+.++-++|+|++++|+++.. +|.|..|.+.. |+.. ...
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 4555543 449999987432 211222356778999999999999998864 46677776653 5432 222
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCC-Cceee--EeecCCCC----------eEEEEEeeCCcEEEEEee
Q 006808 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQ--KFSGHPGA----------VRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~~~--~~~~h~~~----------v~~l~~sp~~~~l~~~~~ 219 (630)
.....+.+.++++++|++++++. |.|.++-++. |.+.. ....|.+. +....|.|++++|++..-
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 33344558899999999999997 8999999865 43211 12234444 788899999999999876
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCc-ccccccCce----
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI-EELRNTKAT---- 293 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~-~~~~~~~~~---- 293 (630)
.-..|.+|++..++......... .++.-.+-+.|. |++++....++ +++|-+|..... ..+...+..
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred CCceEEEEEcccCcccccccccc--CCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 66689999999776542222111 334444556676 99999988887 899999997763 111211110
Q ss_pred ----eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEc-Ccc---CceeeEEeccCCCcEEEeecCCcceee
Q 006808 294 ----KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG-LLL---KPSFQKILVNSGEDINLNCSQDGVLLP 365 (630)
Q Consensus 294 ----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g-~~~---~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (630)
....+..+..+++++ .++++.. +. + .+.++. ... ...++....+-..=..+.|.+.|++|.
T Consensus 238 ~dF~g~~~~aaIhis~dGr----FLYasNR-g~----d--sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGR----FLYASNR-GH----D--SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred cccCCCCceeEEEECCCCC----EEEEecC-CC----C--eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 111122222455554 4444332 10 1 111111 111 111111111222246788999999995
Q ss_pred ccccceeccccceec
Q 006808 366 MSQSLLKSKRGRYVQ 380 (630)
Q Consensus 366 ~s~s~d~~~~~w~~~ 380 (630)
+++-...++.+..+.
T Consensus 307 aa~q~sd~i~vf~~d 321 (346)
T COG2706 307 AANQKSDNITVFERD 321 (346)
T ss_pred EEccCCCcEEEEEEc
Confidence 555555667776664
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-09 Score=102.03 Aligned_cols=307 Identities=11% Similarity=0.067 Sum_probs=182.3
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+.|||-|+||++-..-| |.+|--.+...++.|.. ..+.-+.|||. ..+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~---------------------------EkY 263 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPN---------------------------EKY 263 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCc---------------------------cce
Confidence 4569999999999998754 78997655555554431 11222233333 444
Q ss_pred EEEEeC----------C-CeEEEEEccCCeeeEEccC--CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 89 LVLGTG----------G-GDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 89 l~~~~~----------~-g~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
|++-+. + ..++|||+.+|.....+.. .....-.-+.||.|+++++.-..+ .|.||+..+..++..-
T Consensus 264 LVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~K 342 (698)
T KOG2314|consen 264 LVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKK 342 (698)
T ss_pred EEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccc
Confidence 444332 2 3599999999988766542 222223457899999999877665 5889987764443322
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC--------
Q 006808 156 RASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-------- 220 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~-------- 220 (630)
...-..|....|+|.+..||.=. ..+.+..+.+++.+++-.-|.-.=..+.|-.+|.||+.--..
T Consensus 343 slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 343 SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccc
Confidence 22345788899999998888644 478888888888887766555444456788888888763310
Q ss_pred -CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec---CCcEEEEEcCC-cc---cccccCc
Q 006808 221 -ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN-IE---ELRNTKA 292 (630)
Q Consensus 221 -d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~-~~---~~~~~~~ 292 (630)
-..+.|+.++..... +....-...++...|= |.|..+++.+. ..++.+|...+ .. .+.....
T Consensus 423 ~f~n~eIfrireKdIp----ve~velke~vi~FaWE------P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk 492 (698)
T KOG2314|consen 423 QFSNLEIFRIREKDIP----VEVVELKESVIAFAWE------PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK 492 (698)
T ss_pred eEeeEEEEEeeccCCC----ceeeecchheeeeeec------cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc
Confidence 113556666654432 3334444455554443 78877666544 34788998763 21 1222211
Q ss_pred eeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeecccc
Q 006808 293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (630)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (630)
..+-...++|.|+ .++.+..-+ ..|.+-..+... .....+...-+..-..+-|.|.|+|+ +++|
T Consensus 493 ---~~~N~vfwsPkG~----fvvva~l~s----~~g~l~F~D~~~-a~~k~~~~~eh~~at~veWDPtGRYv-vT~s 556 (698)
T KOG2314|consen 493 ---KFANTVFWSPKGR----FVVVAALVS----RRGDLEFYDTDY-ADLKDTASPEHFAATEVEWDPTGRYV-VTSS 556 (698)
T ss_pred ---cccceEEEcCCCc----EEEEEEecc----cccceEEEecch-hhhhhccCccccccccceECCCCCEE-EEee
Confidence 1122233688887 666666543 123333333221 11111111223445778899999999 7666
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=127.22 Aligned_cols=183 Identities=19% Similarity=0.297 Sum_probs=137.7
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
+.=+|...+.+||+.||.|++|.+..++.+..++... . ..++.+.++.. |+.+.
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g---------------~--s~vtr~~f~~q---------Gnk~~ 2267 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG---------------N--SRVTRSRFNHQ---------GNKFG 2267 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC---------------c--chhhhhhhccc---------CCcee
Confidence 3567778899999999999999999999888776322 1 23334444333 66789
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe---CCCcEEEEeCCCC-ceeEEeecCCCCeEEEE
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTG-SLLGKFRASTKGISCMA 166 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~ 166 (630)
++..||.+.+|.... +.. .-.+.|.....++.|-. ..+++++ .++.+.+||..-. .....-..|.+.+++++
T Consensus 2268 i~d~dg~l~l~q~~p-k~~-~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP-KPY-TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred eeccCCceeecccCC-cce-eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence 999999999999872 222 33357888999999965 5566664 6789999996422 21112277899999999
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+.|....|++|+ |.|++||++..+.+.+++. +. ...+|++++ ..|.|+||++.....
T Consensus 2344 ~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2344 YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEFGL 2402 (2439)
T ss_pred EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEccccch
Confidence 999999999999 9999999998887766653 33 456777777 599999999988653
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-10 Score=117.06 Aligned_cols=203 Identities=12% Similarity=0.153 Sum_probs=139.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++.++ ..+|.|+-+|.++.-| +.+-|+.... ...-+. | .....+....|.+...
T Consensus 25 ~~~~a~--si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h----------------~tpw~vad~qws~h~a---- 80 (1081)
T KOG0309|consen 25 GGFNAV--SINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-H----------------ITPWQVADVQWSPHPA---- 80 (1081)
T ss_pred Ccccce--eeccccchhhhhhhcC-eEEEeccCCCCCceeee-c----------------cCcchhcceecccCCC----
Confidence 455444 8889998888888755 4455654322 111111 0 1123344566665543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC--eeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCC-ceeEEeecC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRAS 158 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~~ 158 (630)
..+-++.+....-.+|++... ..+--+..+|+..|+++.|+|+.. .+++++.|-.+..||+++. .++..+...
T Consensus 81 ---~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 81 ---KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred ---CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 334455566666778887543 334344568999999999999654 5889999999999999976 455566655
Q ss_pred CCCeEEEEEcc-CCCEEEEeC-CeEEEEECCCCc-eeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCcc
Q 006808 159 TKGISCMAVSS-DGKMLATAA-GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 159 ~~~v~~l~~~p-~~~~l~~~~-g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
......++|+. ++..+|+.. +.|++||.+.|. ++..+++|...|..+.|..-- ..+.+++ .|++++.|+......
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKSTT 236 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeeccccccc
Confidence 56678899987 455555555 699999998865 678889999999999987532 3455655 699999999877543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-08 Score=96.71 Aligned_cols=330 Identities=12% Similarity=0.049 Sum_probs=183.2
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
|+ ..++|||.|.+|++.... .|.+|....+..+..+.. ..+....|+|. +. --..|....-..
T Consensus 34 p~--~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~--~~V~~~~fSP~---~k-----YL~tw~~~pi~~---- 96 (561)
T COG5354 34 PV--AYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH--PDVKYLDFSPN---EK-----YLVTWSREPIIE---- 96 (561)
T ss_pred ch--hheeecCcchheehhhcc-ceEEccccchhheeeeec--CCceecccCcc---cc-----eeeeeccCCccC----
Confidence 55 445999999999988764 589998877665554432 22333444443 10 011121110000
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC--EE-EEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEeecC-C
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG--VS-AISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRAS-T 159 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~--v~-~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~-~ 159 (630)
...-+.=-+....+++||+.+|..+..+.. ...+ .. -+.|+.+.++++-. ....++++++ ++... ..+... .
T Consensus 97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 97 PEIEISPFTSKNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred hhhccCCccccCceeEEeccCceeEeeccc-cCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence 000000011223599999999999877753 2223 33 67888887775544 2345889997 33321 122222 2
Q ss_pred CCeEEEEEccCC--CEEEEeC-------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee----------C
Q 006808 160 KGISCMAVSSDG--KMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------G 220 (630)
Q Consensus 160 ~~v~~l~~~p~~--~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~----------~ 220 (630)
..+....|+|.| ..|+.=. +++++|.+..+..+.+-.-....-..+.|.+.|.++++-.. +
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 467888899953 3444322 68999999877766553323333356788898888766331 1
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcCCcccccccCc-eeEEe
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKA-TKILS 297 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~-~~~~~ 297 (630)
...++++++...... +. ....+ .+.-.+|. |.++.+++++ ..-.+.++|++.. ....... .+...
T Consensus 254 esnLyl~~~~e~~i~----V~-~~~~~-pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~ 321 (561)
T COG5354 254 ESNLYLLRITERSIP----VE-KDLKD-PVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTI 321 (561)
T ss_pred cceEEEEeecccccc----ee-ccccc-cceeeeec-----ccCCceeEEecccccceeecccccc-eEEecCCcccccc
Confidence 346788888744322 11 12223 33444554 7776665554 5778899998655 2222222 22222
Q ss_pred eccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccc------cce
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ------SLL 371 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~------s~d 371 (630)
.|+|..+ +|+.+++++. .|.+.+..-.....++..+.+. .-.-+.|||||.++ .+. -.|
T Consensus 322 ----~fsp~~r----~il~agF~nl----~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~-~~~~ts~k~~~D 386 (561)
T COG5354 322 ----FFSPHER----YILFAGFDNL----QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY-DTDTTSEKLRVD 386 (561)
T ss_pred ----cccCccc----EEEEecCCcc----ccceEEeccCCceEEEEEeecC--CceEeeccCCceEE-EecCCCcccccC
Confidence 3788888 9999988763 2333332211111111122121 22456799999987 332 237
Q ss_pred eccccceecc
Q 006808 372 KSKRGRYVQN 381 (630)
Q Consensus 372 ~~~~~w~~~~ 381 (630)
..+++|++..
T Consensus 387 n~i~l~~v~g 396 (561)
T COG5354 387 NSIKLWDVYG 396 (561)
T ss_pred cceEEEEecC
Confidence 8899999853
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=105.73 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=118.7
Q ss_pred eEeEECCCCCE--EEEee-CC--CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDY--FAICS-GD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~--las~s-~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++-+|||||+. ++..+ .+ ..|.+.++.+|+... +....+.... ..|.|.
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~------------------p~wSPD------- 241 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLM------------------PTFSPR------- 241 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccc------------------eEECCC-------
Confidence 55589999975 33233 33 357777888776432 2212222222 344443
Q ss_pred cCCcEEEEEe-CCC--eE--EEEEccCC--eeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEE--eCCC-Ccee
Q 006808 84 LGSSLLVLGT-GGG--DV--LALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEI--DPLT-GSLL 152 (630)
Q Consensus 84 ~~~~~l~~~~-~~g--~v--~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iw--d~~~-~~~~ 152 (630)
++.|+..+ ..| .+ .+|++..+ .....+..++.+.....+|+|||+.|+..+ .+|...+| ++.. +...
T Consensus 242 --G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 242 --KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred --CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 54455444 333 34 34676653 122233323333456789999999877654 46655555 4432 2334
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC--CCeEE
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIA 225 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~--d~~i~ 225 (630)
..+..+...+....|+|||+.|+..+ ..|++||+.+++.. .+......+....|+|||++|+..+.. ...|+
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 44544445677899999999988764 37999999888754 343334456788999999988865532 34688
Q ss_pred EEEcCCCc
Q 006808 226 LWRTDGVK 233 (630)
Q Consensus 226 vwd~~~~~ 233 (630)
+|++..++
T Consensus 399 ~vdl~~g~ 406 (428)
T PRK01029 399 LISLITKK 406 (428)
T ss_pred EEECCCCC
Confidence 88987765
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-08 Score=98.71 Aligned_cols=307 Identities=13% Similarity=0.149 Sum_probs=185.2
Q ss_pred ccceeEeEECCCCCEEEEeeCCC---------------cEEEEECCCCcEEEEeccccccccccccccccccccccccee
Q 006808 5 NIRDILTSFSPALDYFAICSGDA---------------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYT 69 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 69 (630)
.|+.+ .|||+|+||.+=+..+ .+.|||+.+|..+..+.....+ -....
T Consensus 73 ~V~~~--~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---------------~~~Wp 135 (561)
T COG5354 73 DVKYL--DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---------------YLGWP 135 (561)
T ss_pred Cceec--ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---------------ccccc
Confidence 45555 8999999999876444 4899999999999887654322 00122
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCCCE--EEE-----EeCCCcE
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSC--IYS-----AGADGMV 141 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g~~--l~s-----~~~dg~v 141 (630)
.+.|...+. + ++--....+.|+++ ++..... +..-....|..+.|+|.|+. |+. .+..+.+
T Consensus 136 ~~k~s~~D~---------y-~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~ 204 (561)
T COG5354 136 VLKFSIDDK---------Y-VARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMV 204 (561)
T ss_pred eeeeeecch---------h-hhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence 334443321 1 22123456899997 4433211 11111356899999996543 333 3577899
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-------------CeEEEEECCCCceeeEeecCCCCeEEEEEe
Q 006808 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208 (630)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s 208 (630)
++|.+..+..+.+-.-....=..+.|++.|+++++-- .+++++++.... +.....-.++|...+|.
T Consensus 205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~ 283 (561)
T COG5354 205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWE 283 (561)
T ss_pred EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeec
Confidence 9999987776655333233335788999998876531 378888887443 33333568899999999
Q ss_pred eCCcEEEEEe-eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC---CcEEEEEcCCc
Q 006808 209 DNGKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNI 284 (630)
Q Consensus 209 p~~~~l~~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~ 284 (630)
|.++.|++.+ ..+-.+.++|++..- .+.+ +...-....|+ |.+++++.++.+ |.+.+||....
T Consensus 284 p~S~~F~vi~g~~pa~~s~~~lr~Nl------~~~~--Pe~~rNT~~fs-----p~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 284 PLSSRFAVISGYMPASVSVFDLRGNL------RFYF--PEQKRNTIFFS-----PHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred ccCCceeEEecccccceeecccccce------EEec--CCccccccccc-----CcccEEEEecCCccccceEEeccCCc
Confidence 9998777765 567789999988752 1121 22222334455 899999987764 68999997554
Q ss_pred cccc-ccCceeEEeeccCCCcccccchhhhhhhccccccccCCc-eeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc
Q 006808 285 EELR-NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS-VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV 362 (630)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (630)
-.+. .........+ -++|++. .+.++......+..+ ..++..+|... ++.+.+.|.|.|+
T Consensus 351 f~~~~~~~~~n~s~~---~wspd~q----F~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------fel~~~~W~p~~~ 412 (561)
T COG5354 351 FKVAGAFNGLNTSYC---DWSPDGQ----FYDTDTTSEKLRVDNSIKLWDVYGAKV-----------FELTNITWDPSGQ 412 (561)
T ss_pred eEEEEEeecCCceEe---eccCCce----EEEecCCCcccccCcceEEEEecCchh-----------hhhhhccccCCcc
Confidence 3333 2322222222 2566665 444333322222211 23444554322 2567888999999
Q ss_pred eeecccccee
Q 006808 363 LLPMSQSLLK 372 (630)
Q Consensus 363 ~l~~s~s~d~ 372 (630)
+. .+.|.+.
T Consensus 413 ~~-ttsSs~~ 421 (561)
T COG5354 413 YV-TTSSSCP 421 (561)
T ss_pred cc-eeeccCC
Confidence 87 5555444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-07 Score=91.41 Aligned_cols=224 Identities=13% Similarity=0.106 Sum_probs=147.5
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC----------CC
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG----------GG 96 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~----------~g 96 (630)
++|.|.|..+++.+..+.....+.. . ++++ ++.++++.. ++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spD---------------------------g~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASD---------------------------GSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCC---------------------------CCEEEEEeccccccccCCCCC
Confidence 8999999999999888764322221 1 3333 555666655 67
Q ss_pred eEEEEEccCCeeeEEccCCCC------CCEEEEEEecCCCEEEEEe-C-CCcEEEEeCCCCceeEEeecCCC--------
Q 006808 97 DVLALAVSAGQLKWRLSDCHP------GGVSAISFATHGSCIYSAG-A-DGMVCEIDPLTGSLLGKFRASTK-------- 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~------~~v~~~~~s~~g~~l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~~-------- 160 (630)
.|.+||+.+.+.+.++..+-. .....++++|||++++... . +..|.+.|+.+++.+..+.....
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 799999999998877753211 2244889999999998776 3 68999999998876654431110
Q ss_pred -----------------------CeEEE--------------EEcc-CCCEEEEeC-CeEEEEECCCC-----ceeeEee
Q 006808 161 -----------------------GISCM--------------AVSS-DGKMLATAA-GQLKTFNCSDH-----KKMQKFS 196 (630)
Q Consensus 161 -----------------------~v~~l--------------~~~p-~~~~l~~~~-g~i~lwd~~~~-----~~~~~~~ 196 (630)
.+... .|.+ +|+++.+.. |+|++.|+... .....+.
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecc
Confidence 01111 1223 777777666 99999996433 2222221
Q ss_pred c-------CCCCeEEEEEeeCCcEEEEEee---------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCcc
Q 006808 197 G-------HPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV 260 (630)
Q Consensus 197 ~-------h~~~v~~l~~sp~~~~l~~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (630)
. ..+.+.-++++|+++++++... ..+.|.++|..+.+.. .....++ ....+.++
T Consensus 238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi---~~i~vG~---~~~~iavS---- 307 (352)
T TIGR02658 238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL---RKIELGH---EIDSINVS---- 307 (352)
T ss_pred ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE---EEEeCCC---ceeeEEEC----
Confidence 1 2334455999999998887431 1257999999888744 2222232 23334455
Q ss_pred CCCCC-EEEEEe-cCCcEEEEEcCCccccccc
Q 006808 261 DDAGL-YVLAIS-ETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 261 ~~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 290 (630)
||++ +|++.+ .++.|.++|..+++.++..
T Consensus 308 -~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 308 -QDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -CCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999 887776 5788999999999887765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-09 Score=113.60 Aligned_cols=185 Identities=13% Similarity=0.136 Sum_probs=141.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC---EEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~---v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
...+++++.+..+.+||...+.....+....... ..-+.++++.-++++|+.-+.|.+|+....+.-..+.+|.+.+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 5678999999999999999887765553222211 2223345566679999999999999987333333588999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.++.|+-+|+++++.+ .++++|++.+.+... +.-+|+..|..+.|.|+ .+++++ .|.+.++|+.......
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~~~~l~---- 251 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVNGTQLE---- 251 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecccceeh----
Confidence 9999999999999999 899999999988665 66789999999999998 788887 7999999976554422
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
. ..+|...-+.....+ ++...++|++.||.+++|++..
T Consensus 252 ~-y~~h~g~~iw~~~~~-----~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 252 V-YDEHSGKGIWKIAVP-----IGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred h-hhhhhhcceeEEEEc-----CCceEEEeeccCcchhhhhhhc
Confidence 1 223444444444554 6778889999999999999754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-08 Score=99.62 Aligned_cols=299 Identities=14% Similarity=0.137 Sum_probs=176.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
...+||++|++||.+.. ..++|++..++..+.+.... ....+.|+|. +.. -..|-+..
T Consensus 38 ~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~---g~y-----L~T~e~~~----------- 95 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELK--KTYDLLFSPK---GNY-----LLTWEPWA----------- 95 (566)
T ss_pred eeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccc--eeeeeeeccc---ccc-----cccccccc-----------
Confidence 34599999999998764 68999999888644443322 3444555554 111 01121111
Q ss_pred EEEEeC---CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 89 LVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 89 l~~~~~---~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+.+.. .-.+.+|++.++.....+....... ++..|++|..+.+ --..+.+.+|++...+.+.. +-|...|+.+
T Consensus 96 -i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f 171 (566)
T KOG2315|consen 96 -IYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITML 171 (566)
T ss_pred -cccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeE
Confidence 11111 2348899999966554444333333 6788888765422 22345678887765332211 1123344444
Q ss_pred EEccCC--CEEEEe-----C--CeEEE-----------------------------------------------------
Q 006808 166 AVSSDG--KMLATA-----A--GQLKT----------------------------------------------------- 183 (630)
Q Consensus 166 ~~~p~~--~~l~~~-----~--g~i~l----------------------------------------------------- 183 (630)
.++|.+ ..+|+- + +.|+|
T Consensus 172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq 251 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQ 251 (566)
T ss_pred EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccc
Confidence 444431 122221 0 24444
Q ss_pred ----EECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE-eeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCC
Q 006808 184 ----FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS-AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (630)
Q Consensus 184 ----wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (630)
+++....+...+. ..++|.++.|+|+++-|+++ |..--.+.|+|++..- ++.+ +...-..+.|+
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------v~df--~egpRN~~~fn-- 320 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------VFDF--PEGPRNTAFFN-- 320 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------eEeC--CCCCccceEEC--
Confidence 4433212221221 36899999999999876654 3335678999987642 3333 33334566676
Q ss_pred ccCCCCCEEEEEec---CCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCcee-EEEEE
Q 006808 259 GVDDAGLYVLAISE---TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH-TFVAY 334 (630)
Q Consensus 259 ~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~~ 334 (630)
|.|++|+.++. -|.|.|||..+.+.+.........++. ++|++. +++++.-....++.+|- +|..+
T Consensus 321 ---p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~e---W~PdGe----~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 321 ---PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFE---WSPDGE----YFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ---CCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEE---EcCCCc----EEEEEeccccEEecCCeEEEEec
Confidence 99999988876 578999999998888777666555443 789998 99999888777776664 66666
Q ss_pred cCccCceeeEEeccCC-CcEEEeecCC
Q 006808 335 GLLLKPSFQKILVNSG-EDINLNCSQD 360 (630)
Q Consensus 335 g~~~~~~~~~~~~h~~-~v~~~~~s~d 360 (630)
|..... -+.. +.+.+.|-|-
T Consensus 391 G~~l~~------~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 391 GSLLHE------KMFKSELLQVEWRPF 411 (566)
T ss_pred Cceeeh------hhhhHhHhheeeeec
Confidence 655431 1111 5677777753
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-07 Score=93.59 Aligned_cols=263 Identities=14% Similarity=0.060 Sum_probs=148.5
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCceeEEeecCCC-----
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----------DGMVCEIDPLTGSLLGKFRASTK----- 160 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~----- 160 (630)
++|.+.|..+++.+..+..+.... .+ ++|||+.++.+.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 889999999999987776554433 34 9999999877655 78999999999999988774322
Q ss_pred --CeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 --~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
....++++|||+++++.. +.|.++|+.+++.+.++.-.. ...-.. .++..+++.| .|+......+.....
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~-t~e~~~~~~~--~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP-TANDTFFMHC--RDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE-ecCCccEEEe--ecCceEEEEecCCCc
Confidence 234789999999999776 799999999999988876422 111112 2222233222 255444433332211
Q ss_pred ccceeeeeecC--CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc-----ccccc---------CceeEEee
Q 006808 235 QSASCVLAMEH--PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-----ELRNT---------KATKILSS 298 (630)
Q Consensus 235 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~---------~~~~~~~~ 298 (630)
........+.. ...+..-..+. .+|.++.+... |.|++.|+.... .+... .+..+..
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~-----~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~- 252 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSN-----KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ- 252 (352)
T ss_pred eEEeeeeeecCCccccccCCceEc-----CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee-
Confidence 10001111111 00001111121 37888777766 999999953322 11111 1111111
Q ss_pred ccCCCcccccchhhhhhhccccc---cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc-eeeccccceecc
Q 006808 299 SEDVNSKSQKSATAAIFAAKLQD---IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSK 374 (630)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~ 374 (630)
..+.++++ .++.+...+ +-+.....+++.+. ........+.. ...++.+++||||+ +|.++...++.+
T Consensus 253 --ia~~~dg~----~lyV~~~~~~~~thk~~~~~V~ViD~-~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 253 --VAYHRARD----RIYLLADQRAKWTHKTASRFLFVVDA-KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred --EEEcCCCC----EEEEEecCCccccccCCCCEEEEEEC-CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 12455555 444422111 11111234555553 22333333322 34789999999999 774455556777
Q ss_pred ccceec
Q 006808 375 RGRYVQ 380 (630)
Q Consensus 375 ~~w~~~ 380 (630)
.+.+..
T Consensus 325 sViD~~ 330 (352)
T TIGR02658 325 YIFDAE 330 (352)
T ss_pred EEEECc
Confidence 776664
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.6e-08 Score=99.58 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=141.1
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
.+..+++++.+|.|..+|..+|+.+..+........ +| . . .+..+++++.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~p-------------~----v--------~~~~v~v~~~~ 114 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG----GV-------------G----A--------DGGLVFVGTEK 114 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc----ce-------------E----E--------cCCEEEEEcCC
Confidence 466788888899999999999998876653221000 00 0 0 15668889999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE-----EEEEccC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-----CMAVSSD 170 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~l~~~p~ 170 (630)
|.+..+|..+|+.+++.... ..+.+.-.. .+..++.++.++.+..||..+|+.+..+......+. +..+. +
T Consensus 115 g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~ 190 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D 190 (377)
T ss_pred CEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C
Confidence 99999999999998776432 223221111 345777788899999999999998777654332111 11111 3
Q ss_pred CCEEEEeC--CeEEEEECCCCceeeEeecCC--C--C------e-EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHP--G--A------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~--~--~------v-~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+ .++.+. +.+..+|..+|+.+.+..... + . + ....+ .+..+++++ .++.++.||..+++..
T Consensus 191 ~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~~-- 264 (377)
T TIGR03300 191 G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRVL-- 264 (377)
T ss_pred C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcEE--
Confidence 3 445544 899999999998765432110 0 0 0 11112 244666666 5899999999888643
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.... ... . .... ..+..+++++.+|.++.+|..+|+.+-..
T Consensus 265 -W~~~--~~~-~-~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 265 -WKRD--ASS-Y-QGPA-------VDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred -Eeec--cCC-c-cCce-------EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 1111 111 0 0111 24677888889999999999999876544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-07 Score=107.12 Aligned_cols=249 Identities=10% Similarity=0.066 Sum_probs=147.3
Q ss_pred eEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEecccc--cccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 11 TSFSPA-LDYFAICSGDARIKIWDTLKGQVQTEFADIA--STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 11 ~~fs~d-g~~las~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
++++++ |.++++-+..++|++||.. |..+..+.+.. +.... .+. ..... ....+++.+. ++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG-~~~----~a~f~-~P~GIavd~~---------gn 636 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDG-SFE----DATFN-RPQGLAYNAK---------KN 636 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCC-chh----ccccC-CCcEEEEeCC---------CC
Confidence 378875 5566666778899999975 55544443210 00000 000 00000 1123344332 44
Q ss_pred EEEEEeC-CCeEEEEEccCCeeeEEccC-CC---------------CCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 006808 88 LLVLGTG-GGDVLALAVSAGQLKWRLSD-CH---------------PGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 88 ~l~~~~~-~g~v~iwd~~~~~~~~~~~~-~h---------------~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
.|+++.. ++.|+++|+.++... ++.. +. -....+++|+| ++..+++.+.++.|++||..++
T Consensus 637 ~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 637 LLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred EEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 4555554 566999998876542 2210 00 12346899999 4555666677889999998776
Q ss_pred ceeEEeecC---------------CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeec-------------C
Q 006808 150 SLLGKFRAS---------------TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-------------H 198 (630)
Q Consensus 150 ~~~~~~~~~---------------~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~-------------h 198 (630)
... .+.+. -.....++++|++..|+++. +.|++||+.++.......+ +
T Consensus 716 ~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 716 VTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred eEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 542 22211 12346799999998666654 7999999987653211100 0
Q ss_pred --------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC-----------CceeeeeEEecCCc
Q 006808 199 --------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-----------PAVFMDCRCIDNGG 259 (630)
Q Consensus 199 --------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 259 (630)
-....+++|+++|..+++-. .++.|++||..++... .+...+. .-.....++++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~---tiaG~G~~G~~dG~~~~a~l~~P~GIavd--- 867 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVT---TLAGTGKAGFKDGKALKAQLSEPAGLALG--- 867 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEE---EEeccCCcCCCCCcccccccCCceEEEEe---
Confidence 01235889999998665554 6899999999876532 1111000 00122334554
Q ss_pred cCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 260 VDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
++|+.+++-+.++.|++||+.++..
T Consensus 868 --~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 868 --ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred --CCCCEEEEECCCCEEEEEECCCCcc
Confidence 8899888888899999999988754
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-08 Score=88.97 Aligned_cols=261 Identities=11% Similarity=0.058 Sum_probs=160.5
Q ss_pred CCeEEEEEccCCeeeE--EccCCCCCCEEEEEEec---CCC-EEEEEeCCCcEEEEeCCCCceeEEeecCCC------Ce
Q 006808 95 GGDVLALAVSAGQLKW--RLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK------GI 162 (630)
Q Consensus 95 ~g~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~---~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~v 162 (630)
.|.+.+|++...+... .+.....+.+..+.|.- +|. .++-+...|.|.++..........+++-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4667888877655432 22222345677787764 444 356677788899887654443334433221 23
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
.++.|++.+..++++. |.+.+-+...... +++++.|..++..+.|+....-++.+|++|+.+..||++..+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---- 200 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---- 200 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc----
Confidence 5788899888888876 7887666555443 3478899999999999876554544455899999999995442
Q ss_pred eeee--ecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC-cccccccCcee--EEeeccCCCcccccchhhh
Q 006808 239 CVLA--MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTKATK--ILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 239 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 313 (630)
+++. .-|...++.+...+ |.+.+|++|+.|-.|++||.++ ++++...+... +.+. ..|... ..
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~-----~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~----~~p~~~---~~ 268 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSP-----PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIK----HHPEIF---HR 268 (339)
T ss_pred eeeecceeeecceEEEecCC-----CCCceEEEeccccceeeeehhcccCccccCccccceEEEE----ecchhh---hH
Confidence 2332 33556666666665 7889999999999999999884 55655444332 3332 122211 25
Q ss_pred hhhccccccccCCcee-EEEEEcCc--cCceeeEEeccCCCcEEEeecCCcceeecccc-ceeccc-cce
Q 006808 314 IFAAKLQDIVKPASVH-TFVAYGLL--LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS-LLKSKR-GRY 378 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~-~~~~~g~~--~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s-~d~~~~-~w~ 378 (630)
+++++.-+ |- +....... ....+...+.|.+-.+.-.|..-..+| +|+| .|+.++ +|-
T Consensus 269 lL~~CMh~------G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~l-ATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 269 LLAACMHN------GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFL-ATCSFYDKKIRQLWL 331 (339)
T ss_pred HHHHHHhc------CceEEEecccccchheeeeccccccceeecccccccccee-eeeeccccceeeeee
Confidence 55655532 22 22221111 223555666787777777774444456 6665 466655 664
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-09 Score=94.87 Aligned_cols=249 Identities=17% Similarity=0.220 Sum_probs=158.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCc-----EEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.++.|...|.|||+|...|+|.+|.-.... ...+|++|..... |. ........+..+.|+.+..
T Consensus 30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---YL---kSleieEKin~I~w~~~t~----- 98 (460)
T COG5170 30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---YL---KSLEIEEKINAIEWFDDTG----- 98 (460)
T ss_pred eEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---hh---hhccHHHHhhheeeecCCC-----
Confidence 344899999999999999999999765432 2234454432211 10 0112234677888987764
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCee-------------------------------------e----EE-ccCCCCCCEE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQL-------------------------------------K----WR-LSDCHPGGVS 121 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~-------------------------------------~----~~-~~~~h~~~v~ 121 (630)
...+++.+.+.+|++|.+..... + .+ ....|..-|.
T Consensus 99 --r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 99 --RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred --cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 45678888999999998754310 0 01 1145777899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeEEeecCC-----CCeEEEEEccCC--CEEEEeC-CeEEEEECCCCc
Q 006808 122 AISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST-----KGISCMAVSSDG--KMLATAA-GQLKTFNCSDHK 190 (630)
Q Consensus 122 ~~~~s~~g~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~-----~~v~~l~~~p~~--~~l~~~~-g~i~lwd~~~~~ 190 (630)
++.|+.|...++++ .|-.|.+|++.... .+.-++.|. .-|++..|+|.. .++.+.+ |.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999998888877 67789999986432 222334443 357888999953 3445555 999999998432
Q ss_pred e------ee----------EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC--------
Q 006808 191 K------MQ----------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------- 246 (630)
Q Consensus 191 ~------~~----------~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------- 246 (630)
. +. -|.+-...|..+.|+++|+|+++-. =-++++||.+..+.. +.+.+-+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p----ikTi~~h~~l~~~l~ 329 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP----IKTIPMHCDLMDELN 329 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC----ceeechHHHHHHHHH
Confidence 1 10 1112235688899999999998754 358999999887643 3333111
Q ss_pred -----ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 247 -----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 247 -----~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
..+..-.-. .|+.|...+++|+..+..-||-
T Consensus 330 d~YEnDaifdkFei---sfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 330 DVYENDAIFDKFEI---SFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred hhhhccceeeeEEE---EecCCcccccccccccceeeec
Confidence 111111111 1236778888988887777765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=119.62 Aligned_cols=180 Identities=15% Similarity=0.201 Sum_probs=143.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
..+.++|+.||.|++|....++.+..+..+-.+.|+.+.|+.+|+.+..+..||.+.+|... .++...++.|....+..
T Consensus 2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce
Confidence 44678999999999999988887655554445899999999999999999999999999976 67777788898888888
Q ss_pred EEccCCCEEEEeC-----CeEEEEECCCCc---eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 166 AVSSDGKMLATAA-----GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 166 ~~~p~~~~l~~~~-----g~i~lwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.|-. ..+++++ +.+.+||..-.. .+. +.|.+.++++++.|..+.|++|| .+|.|++||++..+..
T Consensus 2299 ~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~-- 2371 (2439)
T KOG1064|consen 2299 RFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLR-- 2371 (2439)
T ss_pred eeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHH--
Confidence 8875 5667665 699999964321 232 78999999999999999999988 7999999999987644
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..+. . + ....++++|+..|.++||++.....+.+.+
T Consensus 2372 -h~~~--~---------~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 -HTFQ--A---------L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred -HHhh--h---------h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence 1111 1 1 134789999999999999998776665543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=94.73 Aligned_cols=248 Identities=13% Similarity=0.095 Sum_probs=150.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCee----eEEccCCCC------------CCEEEEEEecCCC--EEEEEeCCCcEEEEeCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~----~~~~~~~h~------------~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~ 147 (630)
|.+|++|..+|.|.+|.-..... ..+..+.|. ..|..+.|.++++ .++..+.|.+|++|-+.
T Consensus 37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~ 116 (433)
T KOG1354|consen 37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR 116 (433)
T ss_pred cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence 88999999999999986543221 222223343 3588999988665 47788899999999875
Q ss_pred CCce-----------------------------------eEEe-ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCc
Q 006808 148 TGSL-----------------------------------LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (630)
Q Consensus 148 ~~~~-----------------------------------~~~~-~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~ 190 (630)
.... .+.+ .+|.-.|.++.++.|+..++++. =.|.+|++.-..
T Consensus 117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d 196 (433)
T KOG1354|consen 117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID 196 (433)
T ss_pred ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccC
Confidence 3211 1111 14566789999999999999998 589999986432
Q ss_pred e---eeEeecCC-----CCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCccccce-eeeeecC-C---------ceee
Q 006808 191 K---MQKFSGHP-----GAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSAS-CVLAMEH-P---------AVFM 250 (630)
Q Consensus 191 ~---~~~~~~h~-----~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~~-~---------~~~~ 250 (630)
. +.-++.+. .-|++..|+|.. ..|+.++ ..|+|++.|++....-... ..+..+. + -..+
T Consensus 197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI 275 (433)
T KOG1354|consen 197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI 275 (433)
T ss_pred CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence 2 22223232 358889999965 4455555 4899999999854211000 0111110 0 0112
Q ss_pred eeEEecCCccCCCCCEEEEEecCCcEEEEEcCC-cccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCcee
Q 006808 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (630)
.-+.| +++|+++++-+. -+|++||+.- .+++.+.+ +.+ .-+ ..+.+-.....+
T Consensus 276 SDvKF-----s~sGryilsRDy-ltvk~wD~nme~~pv~t~~-----vh~------~lr---~kLc~lYEnD~I------ 329 (433)
T KOG1354|consen 276 SDVKF-----SHSGRYILSRDY-LTVKLWDLNMEAKPVETYP-----VHE------YLR---SKLCSLYENDAI------ 329 (433)
T ss_pred hceEE-----ccCCcEEEEecc-ceeEEEeccccCCcceEEe-----ehH------hHH---HHHHHHhhccch------
Confidence 22334 489999998665 5899999832 22222211 110 000 011111111100
Q ss_pred EEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.....++|+.++.++ +|||.....++.++..
T Consensus 330 --------------------fdKFec~~sg~~~~v-~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 330 --------------------FDKFECSWSGNDSYV-MTGSYNNVFRVFNLAR 360 (433)
T ss_pred --------------------hheeEEEEcCCcceE-ecccccceEEEecCCC
Confidence 123467899999999 9999999999988543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.3e-08 Score=98.82 Aligned_cols=228 Identities=12% Similarity=0.095 Sum_probs=139.0
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..++.++.+|.+..+|..+|+.+........ .++.. .- .+..+++++.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~~~p-----------------~v-------~~~~v~v~~~~ 154 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-----VLSPP-----------------LV-------ANGLVVVRTND 154 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-----eecCC-----------------EE-------ECCEEEEECCC
Confidence 456777888899999999999998766542110 00000 00 04567888899
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCE-----EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC----C---eE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----G---IS 163 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v-----~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~---v~ 163 (630)
|.|..||..+|+.+++..... ..+ .+... .+..++.+..++.+..+|..+|+.+........ . ..
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVT-PALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred CeEEEEEcCCCceeeEEccCC-CceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 999999999999887764211 111 11112 234678888899999999999987654331100 0 00
Q ss_pred EEEEcc--CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 164 CMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 164 ~l~~~p--~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+.-+| .+..+++++ |.++.||..+|+.+..... .. ..... ..+..+++++ .++.+..+|..+++.. .
T Consensus 232 ~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~-~~G~l~~~d~~tG~~~---W 303 (377)
T TIGR03300 232 DVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTD-ADGVVVALDRRSGSEL---W 303 (377)
T ss_pred ccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEEC-CCCeEEEEECCCCcEE---E
Confidence 011111 133444443 8999999999987665541 11 11222 2355666666 5999999999888643 1
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
... ........... ..+..|++++.+|.|++||..+|+.+...+
T Consensus 304 ~~~-~~~~~~~ssp~-------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 304 KND-ELKYRQLTAPA-------VVGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred ccc-cccCCccccCE-------EECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 110 10111111111 135788999999999999999998876544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-07 Score=102.31 Aligned_cols=238 Identities=13% Similarity=0.179 Sum_probs=153.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEE----ECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIW----DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
+.| +++.|-++...+..+..+|.|.+. +..+...- . .|.....+.|++|+|.
T Consensus 76 ~~i--vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E--~-----------------VG~vd~GI~a~~WSPD--- 131 (928)
T PF04762_consen 76 DKI--VSFQYLADSESLCIALASGDIILVREDPDPDEDEIE--I-----------------VGSVDSGILAASWSPD--- 131 (928)
T ss_pred CcE--EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE--E-----------------EEEEcCcEEEEEECCC---
Confidence 345 777899999888888889999988 44333221 1 1445667889999887
Q ss_pred cccccCCcEEEEEeCCCeEEEEEcc----C---------C--eee------E-EccC---------------------C-
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVS----A---------G--QLK------W-RLSD---------------------C- 115 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~----~---------~--~~~------~-~~~~---------------------~- 115 (630)
+.+|++.+++|++.+..-. . | +.+ + +.+. +
T Consensus 132 ------~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 132 ------EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred ------cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 7889999999997765321 0 0 000 0 0000 0
Q ss_pred --CCCCEEEEEEecCCCEEEEEeC---C---CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEE
Q 006808 116 --HPGGVSAISFATHGSCIYSAGA---D---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLK 182 (630)
Q Consensus 116 --h~~~v~~~~~s~~g~~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~ 182 (630)
+...-..++|..||.+|++.+. . ..+++|+- .|....+-..-.+--.+++|.|.|.++|+.. ..|.
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 2234567899999999998764 2 57999994 4765544443333345789999999999876 3566
Q ss_pred EEECCCCceeeEee----cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCC
Q 006808 183 TFNCSDHKKMQKFS----GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258 (630)
Q Consensus 183 lwd~~~~~~~~~~~----~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (630)
+|. ++|-....|. .....|..+.|++++..|++.. .|. |.+|...+..-.. +....+........+.|.+
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWYL-Kqei~~~~~~~~~~~~Wdp-- 358 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWYL-KQEIRFSSSESVNFVKWDP-- 358 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEEE-EEEEEccCCCCCCceEECC--
Confidence 665 5665444443 2356799999999999999876 354 9999988765220 0112222222222333433
Q ss_pred ccCCCCCEEEEEecCCcEEEEEc
Q 006808 259 GVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.+...|...+.+|.+..++.
T Consensus 359 ---e~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 359 ---EKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred ---CCCCEEEEEecCCcEEEEEE
Confidence 34567777787788877664
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.6e-08 Score=96.00 Aligned_cols=189 Identities=14% Similarity=0.179 Sum_probs=143.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCC--CCCCEEEEEEe------c--------------CCCEEEEEeCCCcEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------T--------------HGSCIYSAGADGMVCE 143 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s------~--------------~g~~l~s~~~dg~v~i 143 (630)
..+++..+.+|.+++|+...++....+..- -++..++..|. | +-..++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 678999999999999999999876555421 22344444442 1 1225777888999999
Q ss_pred EeCCCCceeEEee--cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 144 IDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 144 wd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+++..|+....+. .|.+.|.++.++.+-..|.+++ +.+..|+....+.++.+......+.+++.+|||..+++++
T Consensus 85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 9999999888876 4778999999999888888887 7999999999999999998889999999999999998865
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC-CCCEEEEEe-cCCcEEEEEcCC
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS-ETGVCYIWYGQN 283 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s-~dg~i~iwd~~~ 283 (630)
+.|++|++.+.+ .+..+.++...+++..|... ++. -|.+++++. .+..+.+|-...
T Consensus 164 --~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~-~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTL-IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCce-----EEEEecCCCcceEEEEEEEe-ccccccceeeeccccccceeEEEEEc
Confidence 489999999987 44566677777777766511 001 166766654 355677886543
|
|
| >PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-10 Score=94.78 Aligned_cols=92 Identities=25% Similarity=0.296 Sum_probs=87.6
Q ss_pred hHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhc-ccccCCCChhHHHHHHHHHHHHHHHhhHhHH
Q 006808 492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHG-HHLLSQESLTPMLSSLYKITVSREAAFQSLL 570 (630)
Q Consensus 492 ~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~-~~l~~~~~l~~~l~~L~~~~~~~~~~~~~l~ 570 (630)
..|..+|..|+..++..||+++. .|++|++++...+..+.+||..|+ ..|...|++.+.+..|.+|.++|++++.+|+
T Consensus 49 ~~l~~~i~~L~~~~l~~LL~~ir-~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~ 127 (141)
T PF08625_consen 49 EELDEVIKKLDDEQLEKLLRFIR-DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLL 127 (141)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHH
Confidence 57999999999999999999999 899999999999999999999776 6788999999999999999999999999999
Q ss_pred hccchHHHHHHHHH
Q 006808 571 RLSGRLQLTMAQID 584 (630)
Q Consensus 571 ~l~g~l~~~~~~~~ 584 (630)
+-...||+++.+|+
T Consensus 128 q~syllDy~l~~M~ 141 (141)
T PF08625_consen 128 QKSYLLDYTLQQMD 141 (141)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999884
|
This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-08 Score=90.04 Aligned_cols=232 Identities=19% Similarity=0.274 Sum_probs=151.4
Q ss_pred CCCCCEEEEeeCCCcEEEE-ECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 14 SPALDYFAICSGDARIKIW-DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
-|-..-+.+.+.|.++||| +.+.++....+. ......++++.+.+. ...|++|
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-----------------~~mP~~~~~~~y~~e---------~~~L~vg 86 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-----------------HYMPSPCSAMEYVSE---------SRRLYVG 86 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccCchhh-----------------hhCCCCceEeeeecc---------ceEEEEE
Confidence 3445568889999999999 455555443332 112334556665554 5568999
Q ss_pred eCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 93 TGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
-.+|++.-+.+...- ...+....|...|..+.|+-....+++.+.|..+.---.+.+..+..+.-. ..-+++.+.-
T Consensus 87 ~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~ 165 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDA 165 (404)
T ss_pred EecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceee
Confidence 999999888765421 122334579999999999988889999999987765555555544332211 1111112211
Q ss_pred CCCEEEEeC--CeEEEEE--CCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 170 DGKMLATAA--GQLKTFN--CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lwd--~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
. +...|. |.|.+.. ...-.++.++.+|.+.+.+++|.|....|+++. .|..+.+||+...+.. ......|
T Consensus 166 ~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~---~~el~gh 239 (404)
T KOG1409|consen 166 L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGT---AYELQGH 239 (404)
T ss_pred E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcce---eeeeccc
Confidence 1 333443 5444433 344557888999999999999999988888887 5999999999876543 2223334
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
...+- ..+.. +--+.+++++.||.|.+|+.+..
T Consensus 240 ~~kV~-~l~~~-----~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 240 NDKVQ-ALSYA-----QHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhh-hhhhh-----hhheeeeeccCCCeEEEEeccce
Confidence 43333 23322 45688999999999999997654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-09 Score=104.02 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=131.7
Q ss_pred cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-------CceeEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEE
Q 006808 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185 (630)
Q Consensus 113 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd 185 (630)
+.||...|+.++--.+.+.|++++.|++|++|.++. ..|..+++.|+.+|..+.|-.+.++++++.|-|++||
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD 810 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD 810 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence 358998998888777778899999999999999863 3477788999999999999999999999999999999
Q ss_pred CCCCceeeEee--cCCCCeEEEEEee--CCcEEEEEeeCCCeEEEEEcCCCccccceeeeee---cCCceeeeeEEecCC
Q 006808 186 CSDHKKMQKFS--GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM---EHPAVFMDCRCIDNG 258 (630)
Q Consensus 186 ~~~~~~~~~~~--~h~~~v~~l~~sp--~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 258 (630)
.--++++..+. ...+.+..+..-| +...++++++...+++++|.+...-. |.... ..+....++....
T Consensus 811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~---~E~kVcna~~Pna~~R~iaVa-- 885 (1034)
T KOG4190|consen 811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT---CELKVCNAPGPNALTRAIAVA-- 885 (1034)
T ss_pred ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce---eeEEeccCCCCchheeEEEec--
Confidence 98887765432 1122333333333 34455556567889999999987633 33332 3455566777776
Q ss_pred ccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 259 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
+.|++++++-.+|.|.+.|.++|+.+....|.
T Consensus 886 ---~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 886 ---DKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred ---cCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 88999999999999999999999987766654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.3e-07 Score=88.56 Aligned_cols=272 Identities=12% Similarity=0.153 Sum_probs=166.4
Q ss_pred eEECCCCCEEEEeeC-----------CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 11 TSFSPALDYFAICSG-----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 11 ~~fs~dg~~las~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
+.|||+.+||+|-|. ...+.|||+.+|...+.|....+ .......+.|+..+
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~---------------~~~~WP~frWS~Dd-- 317 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS---------------PYLKWPIFRWSHDD-- 317 (698)
T ss_pred eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC---------------CccccceEEeccCC--
Confidence 399999999998763 15799999999999888764211 11234467777653
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-----CCcEEEEeCCCCceeEE
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----dg~v~iwd~~~~~~~~~ 154 (630)
.+++-- ....|.||+..+-..+ .-..-.-.+|..+.|+|.++.|+--.. -..+.+..+.+++.+++
T Consensus 318 -------Ky~Arm-~~~sisIyEtpsf~ll-d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 318 -------KYFARM-TGNSISIYETPSFMLL-DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred -------ceeEEe-ccceEEEEecCceeee-cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 344433 3367999987763332 111113367999999999888775432 13577778888888777
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC-
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d- 221 (630)
-..+.-.=..+-|-.+|.+|++-- ..+.|+.++..........-...|...+|-|.|..+++-+..+
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence 655444345567778888887632 2455666555443222223456788999999998877755333
Q ss_pred -CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe---cCCcEEEEEcCCcccccccCceeEEe
Q 006808 222 -RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILS 297 (630)
Q Consensus 222 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (630)
.++.+|.+.+.... ...+..+ .......+.|+ |.|++++.++ ..|.+.++|...........+....
T Consensus 469 k~tvsfY~~e~~~~~-~~lVk~~--dk~~~N~vfws-----PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~- 539 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKK-PSLVKEL--DKKFANTVFWS-----PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA- 539 (698)
T ss_pred ccceeEEEeecCCCc-hhhhhhh--cccccceEEEc-----CCCcEEEEEEecccccceEEEecchhhhhhccCccccc-
Confidence 47889988742211 1122222 23444556666 9999998874 4689999998743222221111111
Q ss_pred eccCCCcccccchhhhhhhccccc
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
.+..-.-|.|+ |+.+++.-.
T Consensus 540 at~veWDPtGR----YvvT~ss~w 559 (698)
T KOG2314|consen 540 ATEVEWDPTGR----YVVTSSSSW 559 (698)
T ss_pred cccceECCCCC----EEEEeeehh
Confidence 11122456666 777776644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-07 Score=95.51 Aligned_cols=264 Identities=11% Similarity=0.117 Sum_probs=168.0
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.|+--|++|+....|+|+|+.||.++|-.+.+...-...++ -..+..+..+.. ..||. ..+..+.|+...
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQt-LeGH~-~sV~vvTWNe~~------- 83 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQT-LEGHN-ASVMVVTWNENN------- 83 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccccchhhh-hccCc-ceEEEEEecccc-------
Confidence 34446779999999999999999999998876554333333 122333444444 33664 467788898764
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCe
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGI 162 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v 162 (630)
..|-+...+|-|.+|-+-.|....... ....+.|.+++|+.+|..+.....||.|.+=.+...+...+ ++ ....
T Consensus 84 --QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l 159 (1189)
T KOG2041|consen 84 --QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLL 159 (1189)
T ss_pred --ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hhec
Confidence 447788889999999998886543332 34557799999999999999999999988777654333221 22 2244
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCC-------ceeeE----eecCCCCeEEEEEe--------eCCcEEEEEeeCC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDH-------KKMQK----FSGHPGAVRFMTFS--------DNGKYVLSSAVGE 221 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~-------~~~~~----~~~h~~~v~~l~~s--------p~~~~l~~~~~~d 221 (630)
..+.|++|.+.++.+- |.+++||.... .+... +......|..+.|. |+...|+++- ..
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~n 238 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-AN 238 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cC
Confidence 5789999988777765 89999986532 11111 11122335556664 4667777765 67
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC---------cEEEEEcCCcccccccCc
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---------VCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~ 292 (630)
|.+.+..-.....+ .+.. .+-.++. ..|+ ++|..|+.++.+. .|++|. .-|..+++.+.
T Consensus 239 Gr~QiMR~eND~~P---vv~d--tgm~~vg-akWn-----h~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv 306 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEP---VVVD--TGMKIVG-AKWN-----HNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV 306 (1189)
T ss_pred ceehhhhhcCCCCC---eEEe--cccEeec-ceec-----CCCcEEEEccCcccccCccccceEEEec-cchhheEEEec
Confidence 87777654443322 2222 2233333 3444 8999999987642 456554 34555555554
Q ss_pred eeE
Q 006808 293 TKI 295 (630)
Q Consensus 293 ~~~ 295 (630)
+..
T Consensus 307 pg~ 309 (1189)
T KOG2041|consen 307 PGS 309 (1189)
T ss_pred CCc
Confidence 433
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-09 Score=113.67 Aligned_cols=197 Identities=17% Similarity=0.101 Sum_probs=127.6
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC-eEE
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIA 225 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~-~i~ 225 (630)
.+.+++|+.+....+|++|+-+.++|++|+ |.|++|++.+|.......+|..+|+.+.=+.+|..++++++... -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 456677888889999999999999999998 99999999999999999999999999999999998888776554 567
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
+|++.+.-. ..|.-..-.++.|+ .....-+.|+......|||++++..+.+.-........
T Consensus 1171 LW~~~s~~~--------~~Hsf~ed~~vkFs-----n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y------ 1231 (1516)
T KOG1832|consen 1171 LWDASSTGG--------PRHSFDEDKAVKFS-----NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY------ 1231 (1516)
T ss_pred HhccccccC--------ccccccccceeehh-----hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh------
Confidence 899876321 12222222344454 22333445555567899999999888764332221110
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+ ..+.-+.+...-.++|.+|.+.-......|..++. -..=.|+|.|..+ +..| -+|++
T Consensus 1232 -~~----n~a~FsP~D~LIlndGvLWDvR~~~aIh~FD~ft~----~~~G~FHP~g~eV-IINS-----EIwD~ 1290 (1516)
T KOG1832|consen 1232 -SN----NLAHFSPCDTLILNDGVLWDVRIPEAIHRFDQFTD----YGGGGFHPSGNEV-IINS-----EIWDM 1290 (1516)
T ss_pred -hc----cccccCCCcceEeeCceeeeeccHHHHhhhhhhee----cccccccCCCceE-Eeec-----hhhhh
Confidence 00 22222223333445666666654333333433331 1223478888877 4444 46766
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.7e-07 Score=81.87 Aligned_cols=195 Identities=10% Similarity=-0.021 Sum_probs=128.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
...|+.|+..|...+|.+.+.+....+...|...|+-+.=..+.+ -+..++.|.++++.++.-+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 567889999999999999988765555444554443322222222 3677888999999987644332222211123789
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCc--eee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHK--KMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+.++|+++++++.+ ..|..|.+.... .+. .....+..-.+..|+.....++++. .||++.|||++....+-...
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhh
Confidence 99999999999887 788888876532 233 2223334456788999888888887 79999999998865432223
Q ss_pred eeeecCCceeeeeEEecCCccCCCC--CEEEEEecCCcEEEEEcCCccc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAG--LYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
....+++...++.+-|+ +.| .+|+..-.-+.+++.|++++..
T Consensus 243 sstrp~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred cccCCCCCCceEEEEec-----CCCcceEEEEecCcceEEEEEcccCce
Confidence 33445666667777776 443 2333333347899999988754
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-06 Score=82.13 Aligned_cols=217 Identities=18% Similarity=0.208 Sum_probs=133.2
Q ss_pred CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC
Q 006808 26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA 105 (630)
Q Consensus 26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~ 105 (630)
+|+|..||..+|+.+....-.. ... .....+.. .+..+++++.++.|..||..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~------------------~~~~~~~~-------~~~~v~~~~~~~~l~~~d~~t 55 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIG------------------GPVATAVP-------DGGRVYVASGDGNLYALDAKT 55 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCS------------------SEEETEEE-------ETTEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCC------------------CccceEEE-------eCCEEEEEcCCCEEEEEECCC
Confidence 6899999999999988764211 000 00000000 066788889999999999999
Q ss_pred CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe-ecCC---CCeEEEEEccCCCEEEEeC--C
Q 006808 106 GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST---KGISCMAVSSDGKMLATAA--G 179 (630)
Q Consensus 106 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~---~~v~~l~~~p~~~~l~~~~--g 179 (630)
|+.++++... ..+.... ...+..++.++.++.+..+|..+|+.+..+ .... ...........+..++++. +
T Consensus 56 G~~~W~~~~~--~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 56 GKVLWRFDLP--GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp SEEEEEEECS--SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred CCEEEEeecc--cccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 9998777532 2211111 224556777778889999999999998874 3221 1112222222355555554 8
Q ss_pred eEEEEECCCCceeeEeecCCCC----------eEEEEEeeCCcEEEEEeeCCCe-EEEEEcCCCccccceeeeeecCCce
Q 006808 180 QLKTFNCSDHKKMQKFSGHPGA----------VRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQSASCVLAMEHPAV 248 (630)
Q Consensus 180 ~i~lwd~~~~~~~~~~~~h~~~----------v~~l~~sp~~~~l~~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~ 248 (630)
.|..+|+++|+.+.....+... +..-....++ .++.++ .++. +.+ |+.+++.. . ... ...
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~g~~~~~-d~~tg~~~---w--~~~-~~~ 203 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS-GDGRVVAV-DLATGEKL---W--SKP-ISG 203 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-CTSSEEEE-ETTTTEEE---E--EEC-SS-
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-CCCeEEEE-ECCCCCEE---E--Eec-CCC
Confidence 9999999999998877654322 1122222344 555555 4664 555 99998733 1 111 111
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
..... . +.+..|+.++.+|.|..||..+|+.+
T Consensus 204 ~~~~~--~-----~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 204 IYSLP--S-----VDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ECECE--E-----CCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ccCCc--e-----eeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 21111 1 56788888889999999999999764
|
... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-08 Score=95.72 Aligned_cols=158 Identities=12% Similarity=0.160 Sum_probs=108.3
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.++|.|+++|.+..+....++++........+.. ........+.+.+...+ ..+.+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~---------------~~~v~~~~~ai~~~~~~---------~sv~v 124 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD---------------VSCVPKRPTAISFIRED---------TSVLV 124 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeee---------------EeecccCcceeeeeecc---------ceEEE
Confidence 6888999999998888877777654332111100 00011122233333332 23444
Q ss_pred EeCCCe---EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-cCCCCeEEEEE
Q 006808 92 GTGGGD---VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKGISCMAV 167 (630)
Q Consensus 92 ~~~~g~---v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~ 167 (630)
+..-|. +.+|....+.+. ..-||-+.+++++|+||+++|+++..|..|++-....-..+..|. +|..-|..++.
T Consensus 125 ~dkagD~~~~di~s~~~~~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 125 ADKAGDVYSFDILSADSGRCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred EeecCCceeeeeecccccCcc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee
Confidence 554454 555555555553 334899999999999999999999999999998877666666654 59999999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEee
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFS 196 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~ 196 (630)
.++.. |++++ +++++||+.+|+.+.++.
T Consensus 203 ~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 203 TDNYL-LLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccCce-eeecCCCCcEEEEecccCCcccccc
Confidence 88654 66665 799999999999886664
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=86.98 Aligned_cols=197 Identities=10% Similarity=0.182 Sum_probs=130.7
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECC----CCcEEEEecccccccccccccccccccccccceeeEEecccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
+++|++.+ .|.++...|+.|-..|++.-+.+. .....+.+..|...+....|+..
T Consensus 67 mP~~~~~~--~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~------------------- 125 (404)
T KOG1409|consen 67 MPSPCSAM--EYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT------------------- 125 (404)
T ss_pred CCCCceEe--eeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-------------------
Confidence 35677444 999999999999999998887553 33444555556655555555544
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceeEEe
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKF 155 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~--~~~~~~~~~ 155 (630)
..++++.+.|..+.---...+..+..+.. ....+++.|.-. +.+.|...|.|.+-.+ ..-..+.++
T Consensus 126 --------~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~ 193 (404)
T KOG1409|consen 126 --------HEWVLSTGKDKQFAWHCTESGNRLGGYNF--ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTF 193 (404)
T ss_pred --------ceeEEEeccccceEEEeeccCCcccceEe--eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEE
Confidence 45566666665544333333332211110 011111111111 4445555555544433 345677889
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce-eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+|.+.+++++|.|....+.+|. ..+.+||+--++- ...+.+|...|..+...+--+.+++++ .|+.|.+|++...
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~-edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG-EDGGIVVWNMNVK 272 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc-CCCeEEEEeccce
Confidence 99999999999999999999987 7999999976543 345678999999998888888899888 6999999998654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-07 Score=88.34 Aligned_cols=173 Identities=17% Similarity=0.165 Sum_probs=125.0
Q ss_pred ECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 13 FSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 13 fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
|++ +|+++|..|. |...|.+.-.+-.++.- +.+.+ .+.....+ +.-++.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~--~~~~V---------------------rY~r~~~~------~e~~vi 376 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVG--KKGGV---------------------RYRRIQVD------PEGDVI 376 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEcC--CCCce---------------------EEEEEccC------CcceEE
Confidence 555 7889998886 67777766555444321 11111 11111111 446899
Q ss_pred EeCCC-eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccC
Q 006808 92 GTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (630)
Q Consensus 92 ~~~~g-~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (630)
|+.+| .+-|||..+++.. ++. ..-+.|.++..+|+|++++.+.....+.+.|+.+|+....=+...+-|+..+|+|+
T Consensus 377 gt~dgD~l~iyd~~~~e~k-r~e-~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 377 GTNDGDKLGIYDKDGGEVK-RIE-KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred eccCCceEEEEecCCceEE-Eee-CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence 99999 5999999998864 332 45678999999999999999988888999999999876555556678999999999
Q ss_pred CCEEEEeC------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 171 GKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 171 ~~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
++++|-+- ..|+++|+.+++....- ...+.=.+-+|.|++++|..-+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEe
Confidence 99999885 58999999988765432 2333345668999999887755
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-06 Score=79.94 Aligned_cols=198 Identities=16% Similarity=0.193 Sum_probs=111.8
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
++||||+.+||.+...|+|+|||+.. ..+..+....... +.....+..+.|....... .-...|+
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~-----------~d~~~Aiagl~Fl~~~~s~---~ws~ELl 113 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFP-----------GDLSDAIAGLIFLEYKKSA---QWSYELL 113 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccC-----------CccccceeeeEeecccccc---ccceeEE
Confidence 39999999999999999999999864 5555554322111 2223334444444432110 0133567
Q ss_pred EEeCCCeEEEEEccCC-----ee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCc-----------EEEEeCCCCcee
Q 006808 91 LGTGGGDVLALAVSAG-----QL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGM-----------VCEIDPLTGSLL 152 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~-----~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~-----------v~iwd~~~~~~~ 152 (630)
+-...|.++=|-+..+ +. ...+...+...|.++.|+|..+.|+.||.... +..|.+-++.
T Consensus 114 vi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~-- 191 (282)
T PF15492_consen 114 VINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS-- 191 (282)
T ss_pred EEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC--
Confidence 7777888776665322 11 12333445778999999999888887763321 1222211111
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+-.....+. +.-+.....+-.+|.+-+.+...........|..|..||||..|++.. .+|.|.+|++.+-
T Consensus 192 --------Pyyk~v~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPsL 261 (282)
T PF15492_consen 192 --------PYYKQVTSS-EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPSL 261 (282)
T ss_pred --------CcEEEcccc-CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCcc
Confidence 111111111 111111111223333333222222223456799999999999999988 5999999999886
Q ss_pred ccc
Q 006808 233 KKQ 235 (630)
Q Consensus 233 ~~~ 235 (630)
+.+
T Consensus 262 ~~~ 264 (282)
T PF15492_consen 262 RLQ 264 (282)
T ss_pred hhh
Confidence 644
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-06 Score=90.31 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=117.3
Q ss_pred eEeEECCCCCE-EEEeeCC---CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 9 ILTSFSPALDY-FAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 9 ~~~~fs~dg~~-las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+...|||||+. ++..+.+ ..|.++|+.+|+...... ..+ ......|.|..
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g------------------~~~~~~~SPDG------- 244 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG------------------MLVVSDVSKDG------- 244 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC------------------cEEeeEECCCC-------
Confidence 66799999985 6655443 468888998887544322 111 12233455432
Q ss_pred CCcEEEEEeCC--CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CC--cEEEEeCCCCceeEEeecCC
Q 006808 85 GSSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 85 ~~~~l~~~~~~--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
..++++.+.+ ..|.++++.++... .+. .+........|+|||+.|+-.+. .+ .|.++|+.+++..+.... .
T Consensus 245 -~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g 320 (419)
T PRK04043 245 -SKLLLTMAPKGQPDIYLYDTNTKTLT-QIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G 320 (419)
T ss_pred -CEEEEEEccCCCcEEEEEECCCCcEE-Ecc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-C
Confidence 2344444444 45888898887653 332 23333445689999998766543 33 688889887776443321 1
Q ss_pred CCeEEEEEccCCCEEEEeC--C---------eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEE
Q 006808 160 KGISCMAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIAL 226 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g---------~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~v 226 (630)
.. ...|+|+|+.++... . .|++.|+.++.. +.+... .......|+|||+.++......+ .|.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 11 248999999888765 1 578889887764 344432 23345789999998877663333 3666
Q ss_pred EEcCCCc
Q 006808 227 WRTDGVK 233 (630)
Q Consensus 227 wd~~~~~ 233 (630)
.++....
T Consensus 397 ~~l~g~~ 403 (419)
T PRK04043 397 IRLNYNK 403 (419)
T ss_pred EecCCCe
Confidence 6665543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-08 Score=96.54 Aligned_cols=191 Identities=14% Similarity=0.174 Sum_probs=130.8
Q ss_pred CcEEEEEeCCCeEEEEEccC-------CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec-
Q 006808 86 SSLLVLGTGGGDVLALAVSA-------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~-------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~- 157 (630)
.+.+++++.|.+|++|.++. ..+.+++ ..|..+|.++.|-.+.++++++ ||.|.+||.-.++++..+..
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC
Confidence 67789999999999999863 2355555 4799999999999998888776 88899999887776654321
Q ss_pred -CCCCeEEEEEcc--CCCEEEEeC---CeEEEEECCCCceeeEe-----ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 158 -STKGISCMAVSS--DGKMLATAA---GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 158 -~~~~v~~l~~~p--~~~~l~~~~---g~i~lwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
..+.+..+..-| +..++..++ .+|+++|.+.+.-...+ ++....+++++..+.|+.++++-+ .|.|.+
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS-nGci~~ 902 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALS-NGCIAI 902 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhc-CCcEEE
Confidence 122233333333 344555543 79999999988755544 344567899999999999998874 899999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE-EEcCCcccccccC
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI-WYGQNIEELRNTK 291 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~ 291 (630)
.|.++++..+ ... +......... .|..+.++....|-.+.+ |....+......+
T Consensus 903 LDaR~G~vIN---swr-pmecdllqla-------apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 903 LDARNGKVIN---SWR-PMECDLLQLA-------APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred EecCCCceec---cCC-cccchhhhhc-------CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 9999987431 000 0011111111 166778888778888888 8766665443333
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.5e-07 Score=91.84 Aligned_cols=243 Identities=15% Similarity=0.139 Sum_probs=158.4
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc---CC
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL---GS 86 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~ 86 (630)
++.|+|.| ++|.|+. ..|.|-|..+-+.+..+.-|...++.+.|.|. ...+..-. ..
T Consensus 20 A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~------------------~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPA------------------PSPRDLLSPSSSQ 79 (1062)
T ss_pred ccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccC------------------CCchhccCccccc
Confidence 34889888 8888876 47888899988888888766655555555443 21100000 03
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec---CC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~---~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
-+|+++...|.|.+||...+..+..+. .|..++..++|-+ +. ..|++-....++.+|+..+|+...+........
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 457778888999999999988775654 5888999999976 33 346666777899999999999988877777788
Q ss_pred EEEEEcc-CCCEEE-EeC-CeEEEEECCC-------CceeeEeecCCC-------------------------CeEEEEE
Q 006808 163 SCMAVSS-DGKMLA-TAA-GQLKTFNCSD-------HKKMQKFSGHPG-------------------------AVRFMTF 207 (630)
Q Consensus 163 ~~l~~~p-~~~~l~-~~~-g~i~lwd~~~-------~~~~~~~~~h~~-------------------------~v~~l~~ 207 (630)
.|+.+.| |.+.+. .++ |.+.+.+.-. |+..+.-..|.. ....++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 8899998 444444 344 6666654321 222221112211 0123567
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
+|.-+.++... ..+.+.++|+.-.... ....++.. ..++.++.- |....|.++-.||.+.||--+.
T Consensus 239 ~p~~rn~lfi~-~prellv~dle~~~~l---~vvpier~~akfv~vlP~------~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 239 SPHWRNILFIT-FPRELLVFDLEYECCL---AVVPIERGGAKFVDVLPD------PRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ChhhhceEEEE-eccceEEEcchhhcee---EEEEeccCCcceeEeccC------CCcceEEEEecCCeEEEEEeec
Confidence 77665555555 4788999999876533 22222222 224433321 4557899999999999997544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-06 Score=90.49 Aligned_cols=228 Identities=17% Similarity=0.135 Sum_probs=137.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..++.++.+|.+..+|..+|+.+......... ++.+ +. .+..+++++.+|
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----~ssP------------~v------------~~~~v~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----LSRP------------VV------------SDGLVLVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCce-----ecCC------------EE------------ECCEEEEECCCC
Confidence 456677778899999999999988766532110 0000 00 045678888999
Q ss_pred eEEEEEccCCeeeEEccCCCCC----CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-------CeEEE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPG----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-------GISCM 165 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~----~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~l 165 (630)
.+..+|..+|+.+++....... ...+... .+..++.++.+|.+..+|..+|+.+..+..... ....+
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~ 248 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDV 248 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhccccc
Confidence 9999999999998877532110 0011111 234577778899999999999987655432110 01111
Q ss_pred EEcc---CCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 166 AVSS---DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 166 ~~~p---~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
..+| ++..++++. |.++.+|..+|+.+.+..- .....+. ..+..+++++ .++.+..+|..+++.. ...
T Consensus 249 ~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~-~~g~l~ald~~tG~~~---W~~ 320 (394)
T PRK11138 249 DTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVD-QNDRVYALDTRGGVEL---WSQ 320 (394)
T ss_pred CCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEc-CCCeEEEEECCCCcEE---Ecc
Confidence 1223 444444443 8999999999987655431 1111222 2345666666 5899999999887643 111
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
... .......... .+.+|+.++.+|.++++|..+|+.+...+
T Consensus 321 ~~~-~~~~~~sp~v-------~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 321 SDL-LHRLLTAPVL-------YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred ccc-CCCcccCCEE-------ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 100 0111111111 24678889999999999999998765543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-07 Score=84.84 Aligned_cols=144 Identities=12% Similarity=0.216 Sum_probs=91.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee-EEccCCCCCCEEEEEEecCCCEEEEEe-----CCCcEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
++-++++..+|.+.+++...-..+ .++...|.+ -.+.++...++.+.++. .-+..++|+++..+....-....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 566899999999999988752211 111111222 22333334455444432 22345666655333222111123
Q ss_pred CCeEEEEEccCCCEEEE-eC--CeEEEEECCCCce-eeEeecCCCCeEEEEEeeC-CcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~-~~--g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~-~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|.+++-+|....+++ |+ |.+-+||.++... ...+..|..++..+-|+|. +..|++++ .||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCC
Confidence 35999999996655554 44 8999999998753 3445789999999999985 56788877 799999999875
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-06 Score=96.24 Aligned_cols=212 Identities=10% Similarity=0.121 Sum_probs=128.2
Q ss_pred EeEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEeccccccccccccccccc-ccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE-REHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.++|+++++.|+++.. .+.|+++|..++. +.++.+..... ..+..... ....-.....+++.+.+ +.
T Consensus 628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g--~~~~gg~~~~~~~ln~P~gVa~dp~~--------g~ 696 (1057)
T PLN02919 628 GLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKG--SDYQGGKKGTSQVLNSPWDVCFEPVN--------EK 696 (1057)
T ss_pred EEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCccc--CCCCCChhhhHhhcCCCeEEEEecCC--------Ce
Confidence 3489998886666544 5789999987765 33443211000 00000000 00000112245555432 55
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEc-------cCCC------CCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRL-------SDCH------PGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~-------~~~h------~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~ 153 (630)
++++.+.++.|++||..++....-. ..++ -....+++|+|+|+.|+ +-+.++.|++||+.++....
T Consensus 697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~ 776 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL 776 (1057)
T ss_pred EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 6667777888999999877543110 0011 12457899999998655 44567899999998765321
Q ss_pred Eee-------------cC--------CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC------------
Q 006808 154 KFR-------------AS--------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------ 198 (630)
Q Consensus 154 ~~~-------------~~--------~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------ 198 (630)
... .. -.....++++|+|.++++-. +.|++||..++.... +.+.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccc
Confidence 110 00 01236889999998766655 799999998776543 2221
Q ss_pred --CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 199 --PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 199 --~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
-.....++++++|+.+++-+ .++.|++||+.++..
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA 892 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence 12467899999998666554 689999999988753
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.5e-06 Score=80.00 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=125.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCceeEEeecCCCCeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+.+++..+. |+..|.+...+-.+ . .+|.+.|.=..+..+++-++.|..|| .+-++|..+++.. .+...-+.|.+
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~~i-q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~a 406 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGYSI-Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEA 406 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCeeE-E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEE
Confidence 666666654 66777776655543 2 36888899888888888899999999 8999999877654 45556678999
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC----eEEEEEcCCCccccce
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSAS 238 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~~~~~~ 238 (630)
+..+|+|++++++. ..+.++|+.++.....-+...+-|+.+.|+|++++++.+= .+| .|+++|+..++..
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklydm~~~Kiy--- 482 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYDMDGGKIY--- 482 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEecCCCeEE---
Confidence 99999999999988 6888889999986555456677899999999999998864 354 6999999987632
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
....+...--.-+|. |++++|.-.+.
T Consensus 483 ---~vTT~ta~DfsPaFD-----~d~ryLYfLs~ 508 (668)
T COG4946 483 ---DVTTPTAYDFSPAFD-----PDGRYLYFLSA 508 (668)
T ss_pred ---EecCCcccccCcccC-----CCCcEEEEEec
Confidence 222222111122343 88888766554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.5e-06 Score=84.08 Aligned_cols=176 Identities=13% Similarity=0.025 Sum_probs=110.3
Q ss_pred EEEEeCC---CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCC--CcEEEEeCCCCceeEEeecCCCCe
Q 006808 89 LVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGAD--GMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 89 l~~~~~~---g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~d--g~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
++..+.. ..|.++|+.+++...-. ...+......|+|||+.++. .+.+ ..|.++|+.+++.. .+..+....
T Consensus 203 i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d 279 (419)
T PRK04043 203 FYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGID 279 (419)
T ss_pred EEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCcc
Confidence 5544433 45999999988764322 24455677889999987654 4333 46888898877643 344333333
Q ss_pred EEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--------CeEEEEEc
Q 006808 163 SCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--------RYIALWRT 229 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--------~~i~vwd~ 229 (630)
....|+|||+.|+..+ ..|+++|+.+++..+... .... ...|+|+|++++..+... ..|.+.++
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~ 356 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST 356 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence 4568999999888776 279999998877533222 1111 248999999998877433 36888888
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcC
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQ 282 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~ 282 (630)
.++... .++.. .. .....|+ |||++|+..+..+ .+.+.++.
T Consensus 357 ~~g~~~----~LT~~--~~-~~~p~~S-----PDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 357 NSDYIR----RLTAN--GV-NQFPRFS-----SDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCCeE----ECCCC--CC-cCCeEEC-----CCCCEEEEEEccCCcEEEEEEecC
Confidence 777533 11111 11 1123454 9999887776533 35556653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.8e-06 Score=77.94 Aligned_cols=191 Identities=18% Similarity=0.201 Sum_probs=125.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe-cCCCEEEEEeCCCcEEEEeCCCCceeEEeec-----CC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----ST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~ 159 (630)
+.++++-...+.|+.|+..++....... ....++++. ++| .++.+...+ +.++|+.+++....+.. ..
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~----~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVIDL----PGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEES----SSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEEec----CCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence 6677777778999999999987653222 127888888 564 555555544 56669988865444332 23
Q ss_pred CCeEEEEEccCCCEEEEeC----------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 160 KGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
...+.+++.|+|++.++.. |.|+.++.. ++...... .-...+.++|+|+++.|+++.+..+.|..+++
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence 4778999999999777754 247777776 55333333 34567899999999988877767888999998
Q ss_pred CCCcc-c-cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 230 DGVKK-Q-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 230 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..... . ................-+++. .+|+..++....+.|.+++.. |+.+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-----~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-----SDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-----TTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEc-----CCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 65432 1 111222233333345666676 788888887888999999976 7665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-07 Score=89.07 Aligned_cols=160 Identities=11% Similarity=0.112 Sum_probs=106.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc----eeEEeecCCCCeEEEEEccCCCEEEEeC--C---eEEEEECCCC
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDH 189 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g---~i~lwd~~~~ 189 (630)
.+..+.+++.+++++.+..+....++++.... ++..+... ..-+++.|..+...+..+. | .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34455667788888888777776677765432 22222222 2234555555444444443 4 5556665554
Q ss_pred ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEE
Q 006808 190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA 269 (630)
Q Consensus 190 ~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 269 (630)
.+. .+-||-..++.++|+||+++++++. .|..|++-........ ..+-++|...+-+.... ++..|++
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I---esfclGH~eFVS~isl~-------~~~~LlS 210 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI---ESFCLGHKEFVSTISLT-------DNYLLLS 210 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch---hhhccccHhheeeeeec-------cCceeee
Confidence 433 4458999999999999999999987 7999999877665433 23445555544444433 4677999
Q ss_pred EecCCcEEEEEcCCcccccccC
Q 006808 270 ISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
++.|++|++||+.+|+.+.+..
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cCCCCcEEEEecccCCcccccc
Confidence 9999999999999999986544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-05 Score=75.32 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=129.7
Q ss_pred eEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
..|.+ +|.++++-...+.|..|+..++.... +.... ...+..... ...+
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--------------------~~G~~~~~~---------~g~l 54 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--------------------PNGMAFDRP---------DGRL 54 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--------------------EEEEEEECT---------TSEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--------------------CceEEEEcc---------CCEE
Confidence 37888 67777776678999999998776543 21110 111222211 3446
Q ss_pred EEEeCCCeEEEEEccCCeeeEEcc---CC-CCCCEEEEEEecCCCEEEEEeCC--------CcEEEEeCCCCceeEEeec
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLS---DC-HPGGVSAISFATHGSCIYSAGAD--------GMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~---~~-h~~~v~~~~~s~~g~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~ 157 (630)
+++...+ +.++|+.+++...... .. .....+++++.|+|++.++.... |.|..++.. ++......
T Consensus 55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence 6666544 4555999886532221 11 34568899999999976665533 557788876 55444443
Q ss_pred CCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce----eeEe---ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK----MQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~----~~~~---~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
.-.....|+|+|+++.|+++. +.|..|++..... ...+ ....+..-.+++.++|+..++.. ..+.|.++
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~ 210 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF 210 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence 344568999999999887654 7899998853221 1222 22223478899999998766554 58899999
Q ss_pred EcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
+.. ++.. ....++ ....+.++|. -++...|...+
T Consensus 211 ~p~-G~~~---~~i~~p--~~~~t~~~fg----g~~~~~L~vTt 244 (246)
T PF08450_consen 211 DPD-GKLL---REIELP--VPRPTNCAFG----GPDGKTLYVTT 244 (246)
T ss_dssp ETT-SCEE---EEEE-S--SSSEEEEEEE----STTSSEEEEEE
T ss_pred CCC-ccEE---EEEcCC--CCCEEEEEEE----CCCCCEEEEEe
Confidence 987 5433 233333 2244555552 15655555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-06 Score=74.21 Aligned_cols=188 Identities=13% Similarity=0.081 Sum_probs=126.0
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEE-ecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
..+||.|+.-|...+|...+.+.... ...+...+. ... .+ | .. ..-+..++.|
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~---~~~---------r~-c-----d~--------~~~~~i~snd 137 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT---LVK---------RY-C-----DL--------KFPLNIASND 137 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchh---hhh---------hh-c-----cc--------ccceeeccCC
Confidence 35899999999999999886653321 111111000 000 00 0 00 2236788889
Q ss_pred CeEEEEEccCCeeeEEccCCCCC--CEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ce-eEEe-ecCCCCeEEEEEccC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEIDPLTG-SL-LGKF-RASTKGISCMAVSSD 170 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~-~~~~-~~~~~~v~~l~~~p~ 170 (630)
.++++.++..+...... |.. .+.+++++++++++++.+....|..|.+... .. .... ......=.+..|+..
T Consensus 138 ht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred cceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 88888888765443222 322 3889999999999999999999999988643 22 2212 222334467889998
Q ss_pred CCEEEEeC--CeEEEEECCCCceee-----EeecCCCCeEEEEEeeCCc--EEEEEeeCCCeEEEEEcCCCcc
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQ-----KFSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~--~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
...+|++. |++.|||++...... +-+.|.+.++.+.|++-|. .|+.+- .-+.+.+.|+++...
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-HFSRVHVVDTRNYVN 286 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec-CcceEEEEEcccCce
Confidence 88999998 999999998754322 2356889999999998664 344332 467899999998764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-05 Score=83.58 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=138.0
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
.+..+++++.+|.+.-+|..+|+.+......... ..++.. ...... ..... .+..+++++.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~~~~-~~~~~~--~~~~v------------~~~~v~v~~~~ 129 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD---GWFSKN-KSALLS--GGVTV------------AGGKVYIGSEK 129 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc---cccccc-cccccc--cccEE------------ECCEEEEEcCC
Confidence 3557777778899999999999988766432200 000000 000000 00000 15668888999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEE-EEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe-----EEEEEcc
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSS 169 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~-~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p 169 (630)
|.+..+|..+|+.+++.... +.+.+ ... .+..++.++.++.+..+|..+|+.+..+......+ .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~- 204 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA- 204 (394)
T ss_pred CEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-
Confidence 99999999999998776432 22222 112 24567778889999999999999887765431111 111111
Q ss_pred CCCEEEEeC-CeEEEEECCCCceeeEeecCC--C-----CeEEEEEee--CCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHP--G-----AVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 170 ~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~--~-----~v~~l~~sp--~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
++..++..+ |.+..+|..+|+.+....... + ....+..+| .+..+++++ .++.+..+|..+++.. .
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~---W 280 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV---W 280 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE---E
Confidence 233333333 889999999988765543110 0 001111122 234566665 5899999999988744 2
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
........ ... ..+..|+.++.+|.++.+|..+|+.+-
T Consensus 281 ~~~~~~~~---~~~--------~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 281 KREYGSVN---DFA--------VDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred eecCCCcc---CcE--------EECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 22221111 111 245678888899999999999987654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-05 Score=74.04 Aligned_cols=194 Identities=19% Similarity=0.301 Sum_probs=132.2
Q ss_pred CcEEEEEeCCCe-EEEEEccCCeeeEEccCCCCCCE--EEEEEecCCCEEEEEe-----CCCcEEEEeCC-CCceeEEee
Q 006808 86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAG-----ADGMVCEIDPL-TGSLLGKFR 156 (630)
Q Consensus 86 ~~~l~~~~~~g~-v~iwd~~~~~~~~~~~~~h~~~v--~~~~~s~~g~~l~s~~-----~dg~v~iwd~~-~~~~~~~~~ 156 (630)
...++++-.-|+ ..+||+.+++....+.. ..+.- =--.|++||++|++.- ..|.|-+||.. +.+.+..|.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~ 95 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP 95 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence 556777777777 78999999987755532 11111 1247999999999863 45799999998 678888899
Q ss_pred cCCCCeEEEEEccCCCEEEEeC-C-------------------eEEEEECCCCceeeE--e--ecCCCCeEEEEEeeCCc
Q 006808 157 ASTKGISCMAVSSDGKMLATAA-G-------------------QLKTFNCSDHKKMQK--F--SGHPGAVRFMTFSDNGK 212 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~-g-------------------~i~lwd~~~~~~~~~--~--~~h~~~v~~l~~sp~~~ 212 (630)
.+.-....+.+.|||+.|+++. | ++.+.|..+|+.+.. + ..|...|..+++.++|.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence 8887788899999998888875 1 355567788887766 4 23777899999999987
Q ss_pred EEEEEeeCCC-------eEEEEEcCCCccccceeeeeec-----CCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEE
Q 006808 213 YVLSSAVGER-------YIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW 279 (630)
Q Consensus 213 ~l~~~~~~d~-------~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iw 279 (630)
.++..- +.+ -+-+++.... . ..+... .-...+.+++++ +++.++++.|- .|.+.+|
T Consensus 176 V~~a~Q-~qg~~~~~~PLva~~~~g~~--~---~~~~~p~~~~~~l~~Y~gSIa~~-----~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 176 VAFAMQ-YQGDPGDAPPLVALHRRGGA--L---RLLPAPEEQWRRLNGYIGSIAAD-----RDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred EEEEEe-cCCCCCccCCeEEEEcCCCc--c---eeccCChHHHHhhCCceEEEEEe-----CCCCEEEEECCCCCEEEEE
Confidence 655432 333 2333332221 1 111111 122455666666 78887766554 6789999
Q ss_pred EcCCcccccccC
Q 006808 280 YGQNIEELRNTK 291 (630)
Q Consensus 280 d~~~~~~~~~~~ 291 (630)
|..+++.+....
T Consensus 245 d~~tg~~~~~~~ 256 (305)
T PF07433_consen 245 DAATGRLLGSVP 256 (305)
T ss_pred ECCCCCEeeccc
Confidence 999998876554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-05 Score=75.57 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=122.0
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
.+++.++++++.++.|..||..+|+.+..+..... ... . +. . .+..+++++
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~--------------~-------~~-~------~~~~v~v~~ 83 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISG--------------A-------PV-V------DGGRVYVGT 83 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGS--------------G-------EE-E------ETTEEEEEE
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccc--------------e-------ee-e------ccccccccc
Confidence 34667777778999999999999999887763111 100 0 00 0 066678888
Q ss_pred CCCeEEEEEccCCeeeEEc-cCCC--CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC---------
Q 006808 94 GGGDVLALAVSAGQLKWRL-SDCH--PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--------- 161 (630)
Q Consensus 94 ~~g~v~iwd~~~~~~~~~~-~~~h--~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------- 161 (630)
.++.+..+|..+|+.+++. .... ............+..++.+..++.|..+|+.+|+.+..+......
T Consensus 84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 8899999999999998874 2211 111223333334788888888999999999999998887664422
Q ss_pred -eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 162 -ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 162 -v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+..-.+..++..+++.. +.+..+|+.+++.+.... ...+.. ...+.+..+++++ .++.|..||+.+++.
T Consensus 164 ~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 164 DINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred ccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 11222223454444444 543334999998654333 222222 1456677888877 699999999999874
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.3e-05 Score=71.00 Aligned_cols=199 Identities=14% Similarity=0.167 Sum_probs=132.5
Q ss_pred eEeEECC-CCCEEEEeeCCCc-EEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSP-ALDYFAICSGDAR-IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~-dg~~las~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
=.++.+| .+..+|.+-.-|+ ..+||..+++....+....+... .|| -.|.+. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF---------yGH-------g~fs~d---------G 62 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF---------YGH-------GVFSPD---------G 62 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE---------ecC-------EEEcCC---------C
Confidence 3448899 5566777776665 67899999998887764333221 122 112221 5
Q ss_pred cEEEEEe-----CCCeEEEEEcc-CCeeeEEccCCCCCCEEEEEEecCCCEEEEEe------------------CCCcEE
Q 006808 87 SLLVLGT-----GGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------------------ADGMVC 142 (630)
Q Consensus 87 ~~l~~~~-----~~g~v~iwd~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~------------------~dg~v~ 142 (630)
.+|++.- ..|.|-|||.. +-+.+..+. .|.-....+.+.|||+.|+.+. .+..+.
T Consensus 63 ~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 63 RLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred CEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 6666543 34679999999 444454553 4656677889999998877762 123456
Q ss_pred EEeCCCCceeEEeec----CCCCeEEEEEccCCCEEEEeC--C-------eEEEEECCCCceeeEee-------cCCCCe
Q 006808 143 EIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA--G-------QLKTFNCSDHKKMQKFS-------GHPGAV 202 (630)
Q Consensus 143 iwd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~~~~--g-------~i~lwd~~~~~~~~~~~-------~h~~~v 202 (630)
..|..+|+.+..... |...+..+++.++|..++..- | .|-++.. +..+..+. .-.+.+
T Consensus 142 ~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 142 YLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred EEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCce
Confidence 667778887777433 666899999999987665543 2 3444443 33233332 234679
Q ss_pred EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
-+|++++++.++++++-..+.+.+||..++...
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 999999999999888767889999999998743
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00012 Score=66.46 Aligned_cols=143 Identities=21% Similarity=0.271 Sum_probs=98.9
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
.++++.||..+.+.--|..+|....+.. .+..+.|-+... ++++++|+.+|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-------------------lg~RiE~sa~vv----------gdfVV~GCy~g 73 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-------------------LGVRIECSAIVV----------GDFVVLGCYSG 73 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-------------------hCceeeeeeEEE----------CCEEEEEEccC
Confidence 3577888889999999999998876432 111111211111 78899999999
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc-CCCEEE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLA 175 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~ 175 (630)
.+++.+..+|...+.+.....-.+. ....+++..++.++.|++.+..|.++..++.+.+...+...+-++.| ++.+.+
T Consensus 74 ~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 74 GLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred cEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence 9999999999877666533222222 23356889999999999999999999999988776666555666777 555444
Q ss_pred EeC-CeEEEEECCCC
Q 006808 176 TAA-GQLKTFNCSDH 189 (630)
Q Consensus 176 ~~~-g~i~lwd~~~~ 189 (630)
+.. |.+.--....+
T Consensus 153 a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 153 AITAGAVLAVTKNPY 167 (354)
T ss_pred EeccceEEEEccCCC
Confidence 433 66555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-06 Score=87.98 Aligned_cols=280 Identities=12% Similarity=0.142 Sum_probs=167.8
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee--------------eEEccCCCCCCEEEEEEecCCCE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL--------------KWRLSDCHPGGVSAISFATHGSC 131 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~--------------~~~~~~~h~~~v~~~~~s~~g~~ 131 (630)
....|+.|+.. ..+|++|+.+|.+++..+.+... +...+.||.+.|.-+.|+.+.+.
T Consensus 15 vkL~c~~WNke---------~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 15 VKLHCAEWNKE---------SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred ceEEEEEEccc---------CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc
Confidence 45678999876 67899999999999988764321 22334689999999999999889
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEee--cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee-eEeecCCCCeEEEE
Q 006808 132 IYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVRFMT 206 (630)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~-~~~~~h~~~v~~l~ 206 (630)
|-++..+|.|.+|-+-.|.-...+. ..+.-|.+++|+.+|..++... |.|.+=.+...+.. +.+++ .....+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 9999999999999987775322211 1345789999999999887765 76666555443321 11222 2345789
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccc--cceeeee----ecC-CceeeeeEEecC--CccCCCCCEEEEEecCCcEE
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQ--SASCVLA----MEH-PAVFMDCRCIDN--GGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~--~~~~~~~----~~~-~~~~~~~~~~~~--~~~~~~~~~l~s~s~dg~i~ 277 (630)
|++|.+.++.+- ..|.+.+||....-.. ...|... +.. +..+....|++. ..+-|+...++.+-.+|++.
T Consensus 164 ws~D~~~~Lf~~-ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 164 WSEDLEQALFKK-ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred ecccHHHHHhhh-cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 999998877765 5889999997653211 0112111 111 111222222221 11236888999999999998
Q ss_pred EEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccccc-ccCCceeEEEEEcCccCceeeEEeccCCCcEEEe
Q 006808 278 IWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356 (630)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~ 356 (630)
|..-.+...-.-.... ..+. ...+++.+. .++.++.+.- ....+....-.| +.....+.+++.+...|..++
T Consensus 243 iMR~eND~~Pvv~dtg-m~~v-gakWnh~G~----vLAvcG~~~da~~~~d~n~v~Fy-sp~G~i~gtlkvpg~~It~ls 315 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDTG-MKIV-GAKWNHNGA----VLAVCGNDSDADEPTDSNKVHFY-SPYGHIVGTLKVPGSCITGLS 315 (1189)
T ss_pred hhhhcCCCCCeEEecc-cEee-cceecCCCc----EEEEccCcccccCccccceEEEe-ccchhheEEEecCCceeeeeE
Confidence 8754332110000000 1110 111334443 5555555421 111122122222 333445567777888888888
Q ss_pred ecCCccee
Q 006808 357 CSQDGVLL 364 (630)
Q Consensus 357 ~s~dg~~l 364 (630)
|-..|..+
T Consensus 316 WEg~gLri 323 (1189)
T KOG2041|consen 316 WEGTGLRI 323 (1189)
T ss_pred EcCCceEE
Confidence 87777655
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=85.97 Aligned_cols=141 Identities=15% Similarity=0.272 Sum_probs=106.6
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-----ceeEEeecCCCCeEE
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRASTKGISC 164 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~ 164 (630)
++.+.+-.|.+-|+.+|-.. .+ ...+.|.++.|...++.++.|+.+|.|..+|++.+ .+.+.+. |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccccc-cc--ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 44555566888888877553 22 25578999999988999999999999999999865 3444444 7788888
Q ss_pred EEEcc-CCCEEEEeC--CeEEEEECCCCce---eeEeecCCCCeEEE--EEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 165 MAVSS-DGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFM--TFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 165 l~~~p-~~~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l--~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+..-. ++.+|.+.+ |.|++||++--++ ++++.||...-.-+ ...+....++++| +|...+||.++.+...
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEecccCcee
Confidence 88766 566666666 9999999987766 88888886543333 3346666777877 7999999999998865
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-05 Score=81.82 Aligned_cols=193 Identities=16% Similarity=0.204 Sum_probs=127.6
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+|++.+..+|.|+.+|.|.+.+- +-+.++.|+.+...+....+..+ . ..+|++
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~------------------~--------~~~L~s 82 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN------------------K--------QNFLFS 82 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc------------------C--------ceEEEE
Confidence 78999999999999999888773 33444666654433221122111 1 356666
Q ss_pred EeCCCe-----EEEEEccCC---e---ee--EEcc---C-CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC--C--Cc
Q 006808 92 GTGGGD-----VLALAVSAG---Q---LK--WRLS---D-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--T--GS 150 (630)
Q Consensus 92 ~~~~g~-----v~iwd~~~~---~---~~--~~~~---~-~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~--~--~~ 150 (630)
.+.|+. |+||++..- . ++ .++. . ....++.+++.+.+-+.+++|-.+|.|..+.-. . |.
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc
Confidence 665543 899998643 1 22 1111 1 135678999999998889999999999988422 1 11
Q ss_pred eeEEeecCCCCeEEEEEccCCCE--EEEeCCeEEEEECCCCce-eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKM--LATAAGQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~--l~~~~g~i~lwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
...-......+|+.+++..++.. +++....|.+|.+....+ ...+..|...+.|-.|++....|++++ +..+.+|
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY 240 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFY 240 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEE
Confidence 11112234569999999988877 344448999999974442 445677788899999987666566655 5589999
Q ss_pred EcCCCc
Q 006808 228 RTDGVK 233 (630)
Q Consensus 228 d~~~~~ 233 (630)
+....+
T Consensus 241 ~sd~~~ 246 (933)
T KOG2114|consen 241 DSDGRG 246 (933)
T ss_pred cCCCcc
Confidence 987654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.4e-05 Score=68.49 Aligned_cols=198 Identities=13% Similarity=0.120 Sum_probs=118.9
Q ss_pred EEEEeCCCeEEEEEccCCe----eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC------
Q 006808 89 LVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS------ 158 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------ 158 (630)
+++...|..|.|-..+..- ....+.+.....-+-++|+||+..|+.+...|+|++||+.. ..+..+...
T Consensus 11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d 89 (282)
T PF15492_consen 11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGD 89 (282)
T ss_pred EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCc
Confidence 4445555566665544321 11233333333467899999999999999999999999864 333333321
Q ss_pred -CCCeEEEEEccCC-------CEEEEeC-CeEEEEECCC-----CceeeEe--e-cCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 159 -TKGISCMAVSSDG-------KMLATAA-GQLKTFNCSD-----HKKMQKF--S-GHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 159 -~~~v~~l~~~p~~-------~~l~~~~-g~i~lwd~~~-----~~~~~~~--~-~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
...|..+.|.+-. .+|+... |.++-|-+.. .+...+| . .+...|.++.|+|..+.|+++|...
T Consensus 90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 2366777775421 3444444 7666555422 2223333 2 3467899999999999888877533
Q ss_pred C----------eEEEEEcCCCcccc---------------ceeeeee---------cCCceeeeeEEecCCccCCCCCEE
Q 006808 222 R----------YIALWRTDGVKKQS---------------ASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYV 267 (630)
Q Consensus 222 ~----------~i~vwd~~~~~~~~---------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l 267 (630)
. -+..|.+-.+.+.- ....+.+ ......+--+.. +|||..|
T Consensus 170 ~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl-----SPdg~~L 244 (282)
T PF15492_consen 170 NQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL-----SPDGSLL 244 (282)
T ss_pred CCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE-----CCCCCEE
Confidence 2 26677765543210 0000000 011122222333 4999999
Q ss_pred EEEecCCcEEEEEcCCcccccccCc
Q 006808 268 LAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 268 ~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
|+...+|.|.+|++.+.++.+..+.
T Consensus 245 a~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 245 ACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEEcCCeEEEEecCcchhhcccch
Confidence 9999999999999999888766543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-05 Score=87.29 Aligned_cols=198 Identities=12% Similarity=0.193 Sum_probs=126.5
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEE----EccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLAL----AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iw----d~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v 141 (630)
..+..+.+.+. ...++++..+|.|.++ +...... .....-..+|.+++||||+..++.++.++++
T Consensus 76 ~~ivs~~yl~d---------~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 76 DKIVSFQYLAD---------SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred CcEEEEEeccC---------CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECCCcCEEEEEeCCCEE
Confidence 34555666655 5568999999999988 5554433 2222345789999999999999999888888
Q ss_pred EEEeCCCCcee------------------------EEeec------------------------CCCCeEEEEEccCCCE
Q 006808 142 CEIDPLTGSLL------------------------GKFRA------------------------STKGISCMAVSSDGKM 173 (630)
Q Consensus 142 ~iwd~~~~~~~------------------------~~~~~------------------------~~~~v~~l~~~p~~~~ 173 (630)
.+.+- +..++ ..|++ ....-..++|..||.+
T Consensus 145 ~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y 223 (928)
T PF04762_consen 145 LLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY 223 (928)
T ss_pred EEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE
Confidence 77642 11111 11111 1113357889999999
Q ss_pred EEEeC--------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCCccccceeeeee
Q 006808 174 LATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 174 l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
+|+.+ ..++||+-+ |....+-..-.+--.+++|.|.|++++++-... ..|.+|.-...+.. ...+..
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg--eF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG--EFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee--eEecCC
Confidence 99875 378999954 654433332233345789999999988876422 35666664443322 122222
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
......+..+.|+ +++..||....|. |++|-..+.
T Consensus 301 ~~~~~~v~~l~Wn-----~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 301 DPEEEKVIELAWN-----SDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCceeeEEEEC-----CCCCEEEEEecCC-ceEEEeeCC
Confidence 2334445556666 8999998877654 999986654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.6e-07 Score=83.41 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=110.3
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC-----ceeeEeecCCCCeEEE
Q 006808 133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-----KKMQKFSGHPGAVRFM 205 (630)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~-----~~~~~~~~h~~~v~~l 205 (630)
++.+.+..|-+-|+.+|.. +.|. ..+.|.++.|...++++..|. |.|..+|++.+ .+...+. |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 5556777788999888754 3344 567899999999888998888 89999999865 2334444 88899998
Q ss_pred EEee-CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 206 TFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 206 ~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
..-. ++++|++++ .+|+|++||++..+... .+.....+........+ .+.+....|++++.|...+||.++.|
T Consensus 305 q~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l~~---~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 305 QILQFSQQKLMASD-MTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYLPA---HVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhccccceEeecc-CcCceeEeeehhhhccc--ceeeeeccccccccccc---ccccccceEEEccCeeEEEEEecccC
Confidence 7665 678888887 59999999998866421 13333322221111111 12367788999999999999999999
Q ss_pred ccccccCceeE
Q 006808 285 EELRNTKATKI 295 (630)
Q Consensus 285 ~~~~~~~~~~~ 295 (630)
..+.+.+....
T Consensus 379 hLl~tipf~~s 389 (425)
T KOG2695|consen 379 HLLCTIPFPYS 389 (425)
T ss_pred ceeeccCCCCc
Confidence 99888765443
|
|
| >PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15) | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-07 Score=79.34 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=84.8
Q ss_pred CChhHHHHHHhccChhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCChhHHHHHHHHHHHHHHHhhHh
Q 006808 489 IPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKITVSREAAFQS 568 (630)
Q Consensus 489 ~~~~~i~~tv~~l~~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~l~~~l~~L~~~~~~~~~~~~~ 568 (630)
..+..+..++...+...+.+||.|++..+ ++|+....++.++..||.+++..+...|.+.+.+..|+..+.+..+...+
T Consensus 59 ~~R~~L~~AL~~Rde~~L~piL~Fl~k~i-~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~ 137 (148)
T PF09384_consen 59 IRRGALRAALAGRDEESLEPILKFLIKNI-TDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKE 137 (148)
T ss_pred HHccHHHHHHHhCCHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999665 69999999999999999999999999999999999999999999999999
Q ss_pred HHhccchHHHH
Q 006808 569 LLRLSGRLQLT 579 (630)
Q Consensus 569 l~~l~g~l~~~ 579 (630)
|+++.|+|+++
T Consensus 138 l~~l~G~ld~L 148 (148)
T PF09384_consen 138 LLELQGMLDML 148 (148)
T ss_pred HHHHHhHHhhC
Confidence 99999999985
|
This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-06 Score=88.06 Aligned_cols=183 Identities=15% Similarity=0.223 Sum_probs=132.1
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
++..++.|+-...+..+|+.+.+....... ..+.|+-+.. +++.+++|...|+|.+-|.++.+.+++|.+|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 466778888888899999998887644432 2234655554 6789999999999999999999999999999998876
Q ss_pred EEEccCCCEEEEeC-----------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCC
Q 006808 165 MAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 165 l~~~p~~~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+.. .|+.|++++ .-|+|||++.-+.+..+.-+.++ .-+.|+|.- ..+++++ ..|...+.|..+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSGQFQFVDTATL 298 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-cccceeecccccc
Confidence 655 578888887 14789999988776665545444 456788864 3455555 5888898884432
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
.... ..++.....+..+...+++ ++|..++.|..+|.|.+|-
T Consensus 299 sNP~-~~~~~v~p~~s~i~~fDiS-----sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPP-AGVKMVNPNGSGISAFDIS-----SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCc-cceeEEccCCCcceeEEec-----CCCceEEEecccCcEeeec
Confidence 2211 1233333334445666666 8999999999999999997
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.3e-06 Score=76.70 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=120.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCe-eeEEc---cCCCC------------CCEEEEEEecCCC--EEEEEeCCCcEEEEeCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQ-LKWRL---SDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL 147 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~-~~~~~---~~~h~------------~~v~~~~~s~~g~--~l~s~~~dg~v~iwd~~ 147 (630)
|.++++|...|.|.+|.-.... +...+ +++|. ..|..+.|..++. .|+..+.|.+|++|.+.
T Consensus 38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiy 117 (460)
T COG5170 38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIY 117 (460)
T ss_pred cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeee
Confidence 6788888888999999765432 11111 23343 2578888876543 47778899999999875
Q ss_pred CCce------------------------------------------eEEe-ecCCCCeEEEEEccCCCEEEEeC-CeEEE
Q 006808 148 TGSL------------------------------------------LGKF-RASTKGISCMAVSSDGKMLATAA-GQLKT 183 (630)
Q Consensus 148 ~~~~------------------------------------------~~~~-~~~~~~v~~l~~~p~~~~l~~~~-g~i~l 183 (630)
.... .+.+ ..|...+.++.|+.|...++++. =.|.+
T Consensus 118 eknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINL 197 (460)
T COG5170 118 EKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADDLRINL 197 (460)
T ss_pred cccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeeccceeeee
Confidence 3210 0001 23555678899999999999988 68999
Q ss_pred EECCCCce---eeEeecCC-----CCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCccccce-eeee--ec---C---
Q 006808 184 FNCSDHKK---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSAS-CVLA--ME---H--- 245 (630)
Q Consensus 184 wd~~~~~~---~~~~~~h~-----~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~~~~-~~~~--~~---~--- 245 (630)
|++.-... +..++.|. .-|++..|+|... .+..++ ..|.|++-|++....-... ..+. .. +
T Consensus 198 Wnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff 276 (460)
T COG5170 198 WNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFF 276 (460)
T ss_pred ccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhhhhccCchhhhhhccCcccchhH
Confidence 99864322 22334443 3578889999654 344444 4899999999853211000 0111 11 0
Q ss_pred --CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 246 --PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
-...+.-..|+ ++|++|++-+. -+++|||....
T Consensus 277 ~eivsSISD~kFs-----~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 277 EEIVSSISDFKFS-----DNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred HHHhhhhcceEEc-----CCCcEEEEecc-ceEEEEecccc
Confidence 01122333444 89999988766 58999998644
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.6e-07 Score=91.26 Aligned_cols=200 Identities=21% Similarity=0.266 Sum_probs=132.6
Q ss_pred CcccceeEeEECCCC-CEEEEeeCCCcEEEEECCCCcE-EEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
+..|+++ -|.|.. ..+|+|+.|-.+..||+.+... +..+.. .....+.+.|+..+|.
T Consensus 114 sraitd~--n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~------------------w~s~asqVkwnyk~p~- 172 (1081)
T KOG0309|consen 114 SRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS------------------WRSAASQVKWNYKDPN- 172 (1081)
T ss_pred ccceecc--ccCCCCCcceeeccccccceeeeccCCCcceeeeec------------------ccccCceeeecccCcc-
Confidence 3466555 888865 5899999999999999986543 322221 1123456788877654
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEE-eecC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK-FRAS 158 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~ 158 (630)
+++.+....|++||.+.|.......++|...|.++.|+.- -..+++++.||+|+.||......... ....
T Consensus 173 --------vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 173 --------VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred --------hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 4445555569999999887765666789999999999762 33588999999999999865432221 1223
Q ss_pred CCCeEEEEEccCCCEEEEe----CCeEEE---------EECCC-CceeeEeecCCCCeEEEEEeeCC----------cEE
Q 006808 159 TKGISCMAVSSDGKMLATA----AGQLKT---------FNCSD-HKKMQKFSGHPGAVRFMTFSDNG----------KYV 214 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~----~g~i~l---------wd~~~-~~~~~~~~~h~~~v~~l~~sp~~----------~~l 214 (630)
..+|..-++.|-|.-..+- ++.+.+ |+..+ .+++.+|.||...|....|-..+ -.|
T Consensus 245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence 4467777777755433321 133333 33333 35788999999888766664322 146
Q ss_pred EEEeeCCCeEEEEEcCCC
Q 006808 215 LSSAVGERYIALWRTDGV 232 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~ 232 (630)
++=+ .|..+++|-+...
T Consensus 325 VTWS-kD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 325 VTWS-KDQTLRLWPIDSQ 341 (1081)
T ss_pred EEee-cCCceEeeeccHH
Confidence 6655 7999999988653
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.8e-07 Score=57.20 Aligned_cols=39 Identities=23% Similarity=0.604 Sum_probs=35.9
Q ss_pred CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
++++.++.+|..+|++++|+|++.+|++++ .|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 357889999999999999999999999998 699999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-07 Score=97.24 Aligned_cols=193 Identities=16% Similarity=0.274 Sum_probs=135.1
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC--CcEEE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCE 143 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--g~v~i 143 (630)
..++|++|... .+.|++|+..|.|++|++.+|.....+ .+|.++|+-+.-+.+|..+++.+.- ....+
T Consensus 1102 ~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cceeeEEeecC---------CceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHH
Confidence 45777777654 678999999999999999999877555 5899999999999999987765533 25789
Q ss_pred EeCCC-CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ec---CCCCeEEEEEeeCCcEEEE
Q 006808 144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SG---HPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 144 wd~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~---h~~~v~~l~~sp~~~~l~~ 216 (630)
|++.+ +...++|.. -.++.|+.....-+.|. ....+||+.++.++.++ .+ ....-+.+.|+|+...++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99864 455555553 35678877543333443 68899999999877763 21 222346789999988765
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
+|| .+||++..... ..+..-. ....-.| .|+|.-++.-+. |||+++.+.++..+...
T Consensus 1247 ---ndG--vLWDvR~~~aI-----h~FD~ft-~~~~G~F-----HP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAI-----HRFDQFT-DYGGGGF-----HPSGNEVIINSE-----IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred ---eCc--eeeeeccHHHH-----hhhhhhe-ecccccc-----cCCCceEEeech-----hhhhHHHHHHhcCcccc
Confidence 466 57999887532 2222222 1112223 399998888664 89999999887665443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.2e-06 Score=88.14 Aligned_cols=179 Identities=16% Similarity=0.188 Sum_probs=128.6
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..+..|+-...+..+|+.+.+......-.. ..++.+.. +++++++|...
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a------------------~~v~imR~-----------Nnr~lf~G~t~ 196 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA------------------SGVTIMRY-----------NNRNLFCGDTR 196 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC------------------CceEEEEe-----------cCcEEEeeccc
Confidence 34566677766778888988877665432111 12333332 26789999999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---------CCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
|+|.+-|+.+.+.+.++ .+|++.|.++.. .|+.|++||. |.-|++||++..+.+..+.-+.++ .-+.
T Consensus 197 G~V~LrD~~s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr 272 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR 272 (1118)
T ss_pred ceEEeecCCcCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence 99999999999998777 489999998776 6889999874 456899999988877776655554 5678
Q ss_pred EccC-CCEEEEeC--CeEEEEE---CCCCc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 167 VSSD-GKMLATAA--GQLKTFN---CSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 167 ~~p~-~~~l~~~~--g~i~lwd---~~~~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
|+|. ...+++++ |...+.| +.+.. .+..+......+.++.+++++..++.+. .+|.|.+|.
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa 340 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWA 340 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeec
Confidence 8884 23444444 8999888 33332 1222333445699999999999999987 599999998
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-05 Score=83.18 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=116.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
..+++.|+.+|.|++++.+..- . +.. .|+.. .-+|.++++|+.||+|.|..+.+.+...++. ...++.++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~-~~~-~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-K-TNF-DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI 118 (846)
T ss_pred cceeeeccccceEEEEecCCcc-c-ccc-ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence 6789999999999999987553 1 222 35443 5589999999999999999999888877666 45689999
Q ss_pred EEccC-----CCEEEEeC--CeEEEEECCC--CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 166 AVSSD-----GKMLATAA--GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 166 ~~~p~-----~~~l~~~~--g~i~lwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
+++|+ .+.+++|+ | +.++.-+= .+.-..+....++|.++.|. |.+++-+. ++ -|+|||+.+++...
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~-Gv~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DD-GVKVYDTPTRQRLT 193 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CC-CcEEEeccccceee
Confidence 99997 56788887 5 66654221 11111344557899999997 77887775 34 48999998876441
Q ss_pred ceeee-eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 237 ASCVL-AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 237 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..... ....+..+.....| .+...|+.|-. .+|+|..++
T Consensus 194 ~i~~p~~~~R~e~fpphl~W------~~~~~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 194 NIPPPSQSVRPELFPPHLHW------QDEDRLVIGWG-DSVKICSIK 233 (846)
T ss_pred ccCCCCCCCCcccCCCceEe------cCCCeEEEecC-CeEEEEEEe
Confidence 00000 00111222223334 24556666654 478888776
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.4e-07 Score=79.66 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=95.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-eeEEeecCCCCeEEEEEccCCCEEEEeC-C------eEEEEECCCCceeeEeecCC
Q 006808 128 HGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCMAVSSDGKMLATAA-G------QLKTFNCSDHKKMQKFSGHP 199 (630)
Q Consensus 128 ~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g------~i~lwd~~~~~~~~~~~~h~ 199 (630)
-+..+++++.||.+.+++.+.-. ..+.+......-.+.++...+..+.++. | ..+.|+++..+.+..-....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 45678999999999999876421 1111111111223334444566666665 3 45566655433221111112
Q ss_pred CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEE
Q 006808 200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279 (630)
Q Consensus 200 ~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iw 279 (630)
..|++++-+|..+.++.+|.+||.+-+||.+....+ ..+...|...+..+.+.+ .++..|+++++||.+.-|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHp-----k~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHP-----KNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccC-----CCchheeEecCCCcEEEE
Confidence 348899999988888888889999999999987533 223334555555555555 577899999999999999
Q ss_pred EcCC
Q 006808 280 YGQN 283 (630)
Q Consensus 280 d~~~ 283 (630)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00014 Score=74.89 Aligned_cols=216 Identities=12% Similarity=0.125 Sum_probs=115.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
-.+.++|+|++++.++ ||...||.....+.... .....+.|.+. +.
T Consensus 36 ~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----------------------G~g~~~vw~~~----------n~ 81 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----------------------GSGLSFVWSSR----------NR 81 (443)
T ss_dssp SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----------------------EE-SEEEE-TS----------SE
T ss_pred eeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----------------------CceeEEEEecC----------cc
Confidence 3459999999999855 68888887443333221 12345777772 23
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++-..+++|.|+.--.......+... ..+..+-. |..|...+.+ .|.+||+.+++.++.+... +|..+.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 677777888999633222222223222 23444433 7777666554 7999999999999998843 48999999
Q ss_pred cCCCEEEEeC-CeEEEEECCCC-----------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 169 SDGKMLATAA-GQLKTFNCSDH-----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 169 p~~~~l~~~~-g~i~lwd~~~~-----------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
++|.+++..+ .++++++.... .....+..-...|.+..|..+ .|+.+. .. .|+. +..+...
T Consensus 154 ~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~lkY--l~~Ge~~- 226 (443)
T PF04053_consen 154 DDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HLKY--LVNGETG- 226 (443)
T ss_dssp TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EEEE--EETTEEE-
T ss_pred CCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eEEE--EEcCCcc-
Confidence 9999999988 88888875433 023333322567889999866 444443 23 6766 4444422
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.+..+..+-.. +... |....+.....++.+..+.+..
T Consensus 227 --~i~~ld~~~yl---lgy~-----~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 227 --IIAHLDKPLYL---LGYL-----PKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --EEEE-SS--EE---EEEE-----TTTTEEEEE-TT--EEEEE--H
T ss_pred --eEEEcCCceEE---EEEE-----ccCCEEEEEECCCCEEEEEECH
Confidence 23333333333 3332 5557777788888887776643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.5e-05 Score=77.23 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=109.7
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccC------------CCEEEEeC--CeEE
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD------------GKMLATAA--GQLK 182 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~------------~~~l~~~~--g~i~ 182 (630)
...-.++.|+|.| .|+.|+. ..|.+.|..+.+.++.+..|...|+.+.|.|- .-.||++. |.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346778899876 5666654 46899999999999999999999999999873 12456666 9999
Q ss_pred EEECCCCceeeEeecCCCCeEEEEEee---CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCc
Q 006808 183 TFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGG 259 (630)
Q Consensus 183 lwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (630)
+||...+..+..+..|..++..++|-| +.+.++.+-....+|.+|+..+|++. . .......+..+.-+. .
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~---W--k~~ys~~iLs~f~~D--P 165 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF---W--KYDYSHEILSCFRVD--P 165 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee---e--ccccCCcceeeeeeC--C
Confidence 999999988888888899999999976 34344333335779999999998754 2 222233334433333 1
Q ss_pred cCCCCCEEEEEecCCcEEEEEc
Q 006808 260 VDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 260 ~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
-|.+++...+..|.+.+-+.
T Consensus 166 --fd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 166 --FDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred --CCcceEEEEccCceEEEEec
Confidence 13466666666677777653
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00064 Score=61.92 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=117.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
..+++.|+..+.+.-.|.++|+..++..-+ ..|.+-+.- -|.+++.|+..|.+++.+..+|.....|.....-=...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 568899999999999999999998876544 334333322 36789999999999999999998888887654422334
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccceeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLA 242 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~ 242 (630)
...+++..+..++ ++.+..|.++..++...+...+.-.+-++.| ++...++ . ..|.+---........ ....
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~-t~G~vlavt~~~~~~~---~~w~ 174 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-I-TAGAVLAVTKNPYSST---EFWA 174 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-e-ccceEEEEccCCCCcc---eehh
Confidence 5678888999998 8999999999888777654433333445556 4443333 3 2343333333222100 0111
Q ss_pred ecCCceeeee-EEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 243 MEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
......+... ++. +..+..++-||.+.-|+ .+|+++..
T Consensus 175 ~~~~~PiF~splcv--------~~sv~i~~VdG~l~~f~-~sG~qvwr 213 (354)
T KOG4649|consen 175 ATRFGPIFASPLCV--------GSSVIITTVDGVLTSFD-ESGRQVWR 213 (354)
T ss_pred hhcCCccccCceec--------cceEEEEEeccEEEEEc-CCCcEEEe
Confidence 1111111111 222 35666677777777777 56666553
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00069 Score=68.83 Aligned_cols=304 Identities=12% Similarity=0.079 Sum_probs=146.6
Q ss_pred CCCCCEEEEee---------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 14 SPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 14 s~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
||||++++... ..+.+.|||+.+++....... ........|+|.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-------------------~~~~~~~~~sP~-------- 53 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-------------------PPKLQDAKWSPD-------- 53 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-------------------ETTBSEEEE-SS--------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-------------------ccccccceeecC--------
Confidence 68998887742 246788999998765543221 123334556554
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCC----------------CCCEEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----------------PGGVSAISFATHGSCIYSAG-ADGMVCEIDPL 147 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h----------------~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~ 147 (630)
++.++... ++.|.+++..++....-...+- -+.-.++-|||||++|+... .+..|..+.+.
T Consensus 54 -g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 54 -GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp -STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred -CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 44555544 5789999988775543222220 11235688999999987664 34444444321
Q ss_pred CCceeEEeecCCC---CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeE-ee----cCCCCeEEEEEeeCCcEEEEEe-
Q 006808 148 TGSLLGKFRASTK---GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-FS----GHPGAVRFMTFSDNGKYVLSSA- 218 (630)
Q Consensus 148 ~~~~~~~~~~~~~---~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~-~~----~h~~~v~~l~~sp~~~~l~~~~- 218 (630)
.+..... .+..+.+---|.--. .-.+.++|+.+++.... .. .-...+..+.|.+++..|++.-
T Consensus 132 ------~~~~~~~~yp~~~~~~YPk~G~~np--~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 132 ------DYSPPDSQYPEVESIRYPKAGDPNP--RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp ------EESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred ------ccCCccccCCcccccccCCCCCcCC--ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 1111111 233333322221111 02577889988875321 11 2345688999999998444433
Q ss_pred eCCC---eEEEEEcCCCccccceeeeeecCCcee---eeeEEecCCccCCCCCEEEEEecCCcEE--EEEcCCccccccc
Q 006808 219 VGER---YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAISETGVCY--IWYGQNIEELRNT 290 (630)
Q Consensus 219 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~dg~i~--iwd~~~~~~~~~~ 290 (630)
..+. .+.++|..++... .+........+ .....+. ..++.+|.....+|.-+ +++...+.. +..
T Consensus 204 nR~q~~~~l~~~d~~tg~~~---~~~~e~~~~Wv~~~~~~~~~~----~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~l 275 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETR---VVLEETSDGWVDVYDPPHFLG----PDGNEFLWISERDGYRHLYLYDLDGGKP-RQL 275 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCE---EEEEEESSSSSSSSSEEEE-T----TTSSEEEEEEETTSSEEEEEEETTSSEE-EES
T ss_pred ccCCCEEEEEEEECCCCcee---EEEEecCCcceeeeccccccc----CCCCEEEEEEEcCCCcEEEEEcccccce-ecc
Confidence 2222 4677788776533 22222222221 1122221 03445555556778544 455555542 222
Q ss_pred CceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeecccc
Q 006808 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS 369 (630)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s 369 (630)
......+.....+.++.+. ..++|..++ ....++..+... .....+.++........+.|||||++++.+.|
T Consensus 276 T~G~~~V~~i~~~d~~~~~---iyf~a~~~~---p~~r~lY~v~~~-~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNR---IYFTANGDN---PGERHLYRVSLD-SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-SSS-EEEEEEEECTSSE---EEEEESSGG---TTSBEEEEEETT-ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ccCceeecccceEcCCCCE---EEEEecCCC---CCceEEEEEEeC-CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 2222222111112333331 233444422 223334333322 23444555555554579999999999855544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.8e-06 Score=55.03 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=31.2
Q ss_pred cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 113 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 358999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0001 Score=77.11 Aligned_cols=173 Identities=10% Similarity=0.114 Sum_probs=121.7
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+++||.|..+|.|++++.. |.. .+...|... +. .|.++++|+.||
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~---------------------------~~------~Gey~asCS~DG 93 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS---------------------------IL------EGEYVASCSDDG 93 (846)
T ss_pred cceeeeccccceEEEEecC-Ccc-ccccccccc---------------------------cc------CCceEEEecCCC
Confidence 5789999999999999875 332 221111110 11 188999999999
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecC-----CCEEEEEeCCCcEEEEeCC--CCceeEEeecCCCCeEEEEEcc
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATH-----GSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~-----g~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~p 169 (630)
+|.|-.+-+.+....+ ....++.+++++|+ .+.+++||.-| +.++.-+ ..+....+....++|.++.|.
T Consensus 94 kv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 94 KVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR- 169 (846)
T ss_pred cEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec-
Confidence 9999999888765444 34578999999997 56799999888 7776522 111112355567899999996
Q ss_pred CCCEEEEeC-CeEEEEECCCCceeeEeecCCCC------eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGA------VRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 170 ~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~------v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
|+++|-++ --|++||+.+++.+..++..... ...+.|.++.+ |+.| +..+|+|..++.+
T Consensus 170 -g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG--W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 170 -GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG--WGDSVKICSIKKR 235 (846)
T ss_pred -CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe--cCCeEEEEEEecc
Confidence 77999998 57899999998877666433222 34578877664 4443 5668999999843
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00025 Score=77.70 Aligned_cols=194 Identities=13% Similarity=0.157 Sum_probs=125.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+++.|-.++..+..+...|.|.+-|..+..... .|.....+.++.|.+. +.+
T Consensus 72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------------vg~vd~GI~aaswS~D---------ee~ 123 (1265)
T KOG1920|consen 72 VSVQFLADTNSICVITALGDIILVDPETLELEI-------------------VGNVDNGISAASWSPD---------EEL 123 (1265)
T ss_pred EEEEEecccceEEEEecCCcEEEEcccccceee-------------------eeeccCceEEEeecCC---------CcE
Confidence 566788888888888888999988877654321 1455667778888876 678
Q ss_pred EEEEeCCCeEEEEEc----cCCeee----------E--------EccCC---------------------CCCCEEEEEE
Q 006808 89 LVLGTGGGDVLALAV----SAGQLK----------W--------RLSDC---------------------HPGGVSAISF 125 (630)
Q Consensus 89 l~~~~~~g~v~iwd~----~~~~~~----------~--------~~~~~---------------------h~~~v~~~~~ 125 (630)
++..++.+++.+-.- -..+.+ . +-+.| ....=+.|.|
T Consensus 124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW 203 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW 203 (1265)
T ss_pred EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE
Confidence 888888888665432 100000 0 00000 0011245899
Q ss_pred ecCCCEEEEEe----CC-CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceee--
Q 006808 126 ATHGSCIYSAG----AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQ-- 193 (630)
Q Consensus 126 s~~g~~l~s~~----~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~-- 193 (630)
.-||.+|++.. .+ ..|++||-. |..-.+-....+--.+++|-|.|..+++-. +.|.+|.- +|-...
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f 281 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEF 281 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcccccc
Confidence 99999988732 33 789999966 544333222333446899999999998864 56888873 443222
Q ss_pred --EeecCCCCeEEEEEeeCCcEEEE---EeeCCCeEEEEEcCCCc
Q 006808 194 --KFSGHPGAVRFMTFSDNGKYVLS---SAVGERYIALWRTDGVK 233 (630)
Q Consensus 194 --~~~~h~~~v~~l~~sp~~~~l~~---~~~~d~~i~vwd~~~~~ 233 (630)
.++....+|..++|+.++..|++ .. ....|++|-+.+..
T Consensus 282 ~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 282 VLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH 325 (1265)
T ss_pred ccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCeE
Confidence 23334455899999999998887 33 34459999987754
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0003 Score=74.70 Aligned_cols=235 Identities=17% Similarity=0.204 Sum_probs=137.3
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEeccccccccc--ccccccccccccccceeeEEecccccccccccCCcEEEEEe--
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-- 93 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~-- 93 (630)
..++.++.+|.|.-+|..+|+.+..+......... +.-+|. .+ +..+++++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~-------------v~------------~~~v~vg~~~ 165 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPT-------------IV------------KKLVIIGSSG 165 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCE-------------EE------------CCEEEEeccc
Confidence 57777888999999999999998876532211000 000010 00 33455554
Q ss_pred -------CCCeEEEEEccCCeeeEEccCCCCC-------------------CE-EEEEEecCCCEEEEEeCCC-------
Q 006808 94 -------GGGDVLALAVSAGQLKWRLSDCHPG-------------------GV-SAISFATHGSCIYSAGADG------- 139 (630)
Q Consensus 94 -------~~g~v~iwd~~~~~~~~~~~~~h~~-------------------~v-~~~~~s~~g~~l~s~~~dg------- 139 (630)
.+|.|..+|..+|+.++++...+.. .| ...++.+.+..++.++.++
T Consensus 166 ~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~ 245 (488)
T cd00216 166 AEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGG 245 (488)
T ss_pred cccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCC
Confidence 3578899999999988776432111 01 1234455566788777665
Q ss_pred -----------cEEEEeCCCCceeEEeecCCCCeE------EEEEc----cCCC---EEEEeC--CeEEEEECCCCceee
Q 006808 140 -----------MVCEIDPLTGSLLGKFRASTKGIS------CMAVS----SDGK---MLATAA--GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 140 -----------~v~iwd~~~~~~~~~~~~~~~~v~------~l~~~----p~~~---~l~~~~--g~i~lwd~~~~~~~~ 193 (630)
.|..+|..+|+..-.++....... ...+. -++. .+++++ |.++.+|..+|+.+-
T Consensus 246 ~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 246 RRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred ccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 799999999998877653211111 01111 1232 455554 899999999999876
Q ss_pred EeecCCCCeEEEEEeeCCcEEEEEe-----------------eCCCeEEEEEcCCCccccceeeeeecC-C------cee
Q 006808 194 KFSGHPGAVRFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCVLAMEH-P------AVF 249 (630)
Q Consensus 194 ~~~~h~~~v~~l~~sp~~~~l~~~~-----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~-~------~~~ 249 (630)
..... ...++.+| + .++..+ ..++.+...|+.+++.. ....... . ...
T Consensus 326 ~~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~---W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 326 ARPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV---WEKREGTIRDSWNIGFPH 397 (488)
T ss_pred EeEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe---eEeeCCccccccccCCcc
Confidence 65321 01123333 2 222211 13567888888887744 2222210 0 001
Q ss_pred e-eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 250 M-DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 250 ~-~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
. .... ..+..|++++.||.|+.+|..+|+.+-..+.
T Consensus 398 ~~~~~~-------~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 398 WGGSLA-------TAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred cCcceE-------ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 0 1111 2467888999999999999999998876554
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.1e-05 Score=73.01 Aligned_cols=238 Identities=14% Similarity=0.098 Sum_probs=132.7
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..-||++ +|||..+ ++..++.+.+|+|.|+.+..++..+..+ . .+-.++|.-.+
T Consensus 193 g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~------------------~~wSC~wDlde---- 247 (463)
T KOG1645|consen 193 GSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-N------------------QIWSCCWDLDE---- 247 (463)
T ss_pred chhhhhh--ccCccccceeeeeccCceEEEEecccceeeeheecc-C------------------CceeeeeccCC----
Confidence 3467777 9999887 7888999999999999998888766533 1 22345565554
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCC--CCCCEEEEEEe------cCCCEEEEEeCCCcEEEEeCCC--Cce
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------THGSCIYSAGADGMVCEIDPLT--GSL 151 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s------~~g~~l~s~~~dg~v~iwd~~~--~~~ 151 (630)
..+|+.|..+|.|.|||++..+.......+ ...+|..++.- +.|.+++.++.+ ...|.+.- +..
T Consensus 248 ----~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~ 321 (463)
T KOG1645|consen 248 ----RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECL 321 (463)
T ss_pred ----cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCC
Confidence 678999999999999999876532211111 22344444432 234444444443 45565432 112
Q ss_pred eEEeec-CCCCeEEEEEccCCCEEEEeC---------CeEEE-EECCCCceeeEe-ecC-CCC---e---EEEEEeeCCc
Q 006808 152 LGKFRA-STKGISCMAVSSDGKMLATAA---------GQLKT-FNCSDHKKMQKF-SGH-PGA---V---RFMTFSDNGK 212 (630)
Q Consensus 152 ~~~~~~-~~~~v~~l~~~p~~~~l~~~~---------g~i~l-wd~~~~~~~~~~-~~h-~~~---v---~~l~~sp~~~ 212 (630)
...+.. ..+...++.+.+..+.++... ..|.. .|-..|..+... .++ .++ + ..+.-.++.+
T Consensus 322 p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn 401 (463)
T KOG1645|consen 322 PCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNN 401 (463)
T ss_pred CcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecccccc
Confidence 221221 234555666666445444433 11111 122334333222 122 111 0 1122245667
Q ss_pred EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC-CCEEEEEecCCcEEEEEcC
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~ 282 (630)
+++..+..-+.+.+||..+... ...+.-...+.++..+. -+ +.+|++-+ |..++||...
T Consensus 402 ~iv~~gd~tn~lil~D~~s~ev-----vQ~l~~~epv~Dicp~~-----~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 402 YIVVVGDSTNELILQDPHSFEV-----VQTLALSEPVLDICPND-----TNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred EEEEecCCcceeEEeccchhhe-----eeecccCcceeecceee-----cCCcchhhhee-cceEEEEecC
Confidence 7777665567899999998763 33444444455544443 33 45565555 4688888653
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=78.48 Aligned_cols=199 Identities=11% Similarity=0.074 Sum_probs=137.1
Q ss_pred CcEEEEEeCCCeEEEEEccC--CeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
..++..++.||.++.|.... +.........|-+.|.+++.+.+|-.+.|.+. |..++++|+.+...+..++...-+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP- 98 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP- 98 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-
Confidence 67899999999999998764 33333344578889999999999998999777 999999999876655443321111
Q ss_pred EEEEEc-cCC---CEEEEeC---CeEEEEECCCCc-eee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC-
Q 006808 163 SCMAVS-SDG---KMLATAA---GQLKTFNCSDHK-KMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV- 232 (630)
Q Consensus 163 ~~l~~~-p~~---~~l~~~~---g~i~lwd~~~~~-~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~- 232 (630)
..+.|. ..| ..++++. +.+.++|-...- ... .-.-|..+|..+.++|.+..+++.. ..|.|.-|.....
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~ 177 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPF 177 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcc
Confidence 122222 222 1444443 899999976543 222 2346899999999999999888766 5789999998741
Q ss_pred ccccceeeeee---------cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 233 KKQSASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 233 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
+.+.....+.+ ........+..|+ |+|..+.+.+.|..|++++.++|+.++...
T Consensus 178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhh
Confidence 11100011111 2223445566666 999999999999999999999998877654
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.6e-05 Score=72.79 Aligned_cols=244 Identities=12% Similarity=0.072 Sum_probs=150.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCC--C-cEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLK--G-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~--~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.|..-.+++.+++.||.++.|--.. | +.+..+..|.+.+.+++.+-+ +.+
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d---------------------------g~L 67 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD---------------------------GWL 67 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc---------------------------cee
Confidence 4445567999999999999996432 1 223334444444443333333 556
Q ss_pred EEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC--EEE-EEeCCCcEEEEeCCCCc--eeEEeecCCCCe
Q 006808 89 LVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIY-SAGADGMVCEIDPLTGS--LLGKFRASTKGI 162 (630)
Q Consensus 89 l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~-s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v 162 (630)
+.+.+. |..++++|+.+-..+.-+....-....++..++... .++ +.-.++.+.++|-.... ....-.-|..+|
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV 147 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPV 147 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCce
Confidence 666555 888999998765543211111111112222233211 233 23367899999966443 223334578899
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCC-Cc-----ee---------eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSD-HK-----KM---------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~-~~-----~~---------~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.++.++|.+..+++.. |.|..|.... .+ .. ..+.-......++.|+|+|..+.+.+ .|+.|+
T Consensus 148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR 226 (558)
T KOG0882|consen 148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVR 226 (558)
T ss_pred EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEE
Confidence 9999999999998887 8999998762 11 11 11222345678999999999999988 699999
Q ss_pred EEEcCCCccccc------------eeeeee----------------cCCceeeeeEEecCCccCCCCCEEEEEecCCcEE
Q 006808 226 LWRTDGVKKQSA------------SCVLAM----------------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 226 vwd~~~~~~~~~------------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~ 277 (630)
++.+.+++.... ...+.+ .+......-++|. ..|++|+-|+-=| |+
T Consensus 227 ~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fd-----es~~flly~t~~g-ik 300 (558)
T KOG0882|consen 227 GFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFD-----ESGNFLLYGTILG-IK 300 (558)
T ss_pred EEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEc-----CCCCEEEeeccee-EE
Confidence 999998863200 000000 0112222334454 7889999888754 78
Q ss_pred EEEcCCcccccc
Q 006808 278 IWYGQNIEELRN 289 (630)
Q Consensus 278 iwd~~~~~~~~~ 289 (630)
+.++.++...+.
T Consensus 301 vin~~tn~v~ri 312 (558)
T KOG0882|consen 301 VINLDTNTVVRI 312 (558)
T ss_pred EEEeecCeEEEE
Confidence 889888876554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00014 Score=76.22 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=81.3
Q ss_pred eEECCCCCEEEEeeC----CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 11 TSFSPALDYFAICSG----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 11 ~~fs~dg~~las~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
.+|+|...+||+++- .|.|.||- .+|+...... .....+.++|+|. .
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-------------------~P~hatSLCWHpe---------~ 71 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-------------------YPVHATSLCWHPE---------E 71 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-------------------cceehhhhccChH---------H
Confidence 389999999998873 57777773 4555332111 1234556888875 4
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
-.|+.|-.-|.+.+|...+.+.. ++...|..+|..+.||++|..++++..-|.|.+|.+.
T Consensus 72 ~vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 72 FVLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45677778899999998887765 5556799999999999999999999999999999765
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0013 Score=68.95 Aligned_cols=247 Identities=9% Similarity=0.034 Sum_probs=134.3
Q ss_pred EEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccc--c--ccc-------eeeEEecccc-c---cccccc
Q 006808 20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH--L--SVD-------YTCMKWLSVD-R---KKKRKL 84 (630)
Q Consensus 20 las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~--~~~-------~~~~~w~~~~-~---~~~~~~ 84 (630)
|.+|+..|.++|+-+-+++.+..+.- |+++...|. . +.. ...+.|-... + ....+.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipv---------f~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~y 139 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPV---------FNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTY 139 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeee---------ecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCcc
Confidence 66888899999999999988776542 221111000 0 000 0112332110 1 001112
Q ss_pred CCcEEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEE-------------------EecCCCEEEEEe-CCCcEEE
Q 006808 85 GSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAIS-------------------FATHGSCIYSAG-ADGMVCE 143 (630)
Q Consensus 85 ~~~~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~-------------------~s~~g~~l~s~~-~dg~v~i 143 (630)
.++++++-.. +..|-..++..-++-..+.......+.+++ ++|||+.+...+ ..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 3667777664 444555555443332111111222222222 344555443222 3456777
Q ss_pred EeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC------------------------------------------CeE
Q 006808 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA------------------------------------------GQL 181 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~------------------------------------------g~i 181 (630)
.|..+.+...++.... ....++++|+|+++++++ +.|
T Consensus 220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V 298 (635)
T PRK02888 220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKV 298 (635)
T ss_pred EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEE
Confidence 7877776666655333 335566777777666553 346
Q ss_pred EEEECCC-----CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc------cceee-eeecCCcee
Q 006808 182 KTFNCSD-----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------SASCV-LAMEHPAVF 249 (630)
Q Consensus 182 ~lwd~~~-----~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~------~~~~~-~~~~~~~~~ 249 (630)
.++|..+ ...+..++ -......+.++|||+++++++..+.++.|.|+.+.+.. ...++ ....- +.-
T Consensus 299 ~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlG 376 (635)
T PRK02888 299 PVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLG 376 (635)
T ss_pred EEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCC
Confidence 6677666 23333333 33456789999999999999877899999999885521 00011 11111 111
Q ss_pred eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.....|. ++|....+...|..|..||+..
T Consensus 377 PLHTaFD-----g~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFD-----GRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEC-----CCCCEEEeEeecceeEEEehHH
Confidence 1123344 7888888888899999999865
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00054 Score=71.71 Aligned_cols=102 Identities=13% Similarity=0.118 Sum_probs=72.7
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCC-----CceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce-----
Q 006808 125 FATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK----- 191 (630)
Q Consensus 125 ~s~~g~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~----- 191 (630)
+.++|++.+.+ ++.|.+.|..+ .+.+..+.. ......+.++|||+++++++ ++|.|+|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 34578776653 67899999988 355555553 44568999999999999988 7999999987552
Q ss_pred -------eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 192 -------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 192 -------~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+.+..-.. .....+|.++|....+ -.-|..|..|++..
T Consensus 361 ~~~~~~vvaevevGl-GPLHTaFDg~G~ayts-lf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGL-GPLHTAFDGRGNAYTT-LFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCC-CcceEEECCCCCEEEe-EeecceeEEEehHH
Confidence 22332222 2346789999875444 44689999999876
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.9e-05 Score=77.85 Aligned_cols=155 Identities=16% Similarity=0.236 Sum_probs=100.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
-.-+++..+++++.|+.-|.+++|+-..+.... ++.. + ....++....+.. ..+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~---------------~--~~~~~~~~~vs~~--------e~l 90 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE---------------G--ATGITCVRSVSSV--------EYL 90 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhc-cccc---------------C--ccceEEEEEecch--------hHh
Confidence 344788899999999999999999987766432 1110 1 1122233333322 567
Q ss_pred EEEEeCCCeEEEEEccCCee-----eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----ceeEEeecCC
Q 006808 89 LVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----SLLGKFRAST 159 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~-----~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~ 159 (630)
+++|+..|.|.++.++.+.. +......|...|++++|++++..+++|...|+|..-.+.+. -..+.+-...
T Consensus 91 vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 91 VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 88999999999998876432 22222447789999999999999999999999998887762 1122233344
Q ss_pred CCeEEEEEccCCCEEEEeCCeEEEEECCCCc
Q 006808 160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHK 190 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~ 190 (630)
..|-.+.+. ++..|++..-...+++.+.+.
T Consensus 171 s~IVQlD~~-q~~LLVStl~r~~Lc~tE~et 200 (726)
T KOG3621|consen 171 SEIVQLDYL-QSYLLVSTLTRCILCQTEAET 200 (726)
T ss_pred cceEEeecc-cceehHhhhhhhheeecchhH
Confidence 566666554 233333333445566665443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2e-06 Score=87.22 Aligned_cols=196 Identities=11% Similarity=0.134 Sum_probs=125.6
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeee-EEccCCCCCCEEEEEEec-CCCEEEEEe----CCCc
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFAT-HGSCIYSAG----ADGM 140 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~-~g~~l~s~~----~dg~ 140 (630)
-+.|++|+.... ..++++|..+|.|.+-..+...-. +.+..+|..+.++++|++ |.++|++|- .|..
T Consensus 58 y~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 58 YVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 456777766542 467899999999999887654332 455668889999999998 556676662 4568
Q ss_pred EEEEeCCCC--ceeE--Eeec-CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEeecCCCCeEEEEEee-CC
Q 006808 141 VCEIDPLTG--SLLG--KFRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSD-NG 211 (630)
Q Consensus 141 v~iwd~~~~--~~~~--~~~~-~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~~h~~~v~~l~~sp-~~ 211 (630)
+.|||+.++ .+.. .|.+ ......+++|..+.+++.+|. ..++++|++... ....+ .+..+..+...| .+
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP 208 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence 999999876 2222 2333 233566889998888888887 689999987432 12222 234566777888 67
Q ss_pred cEEEEEeeCCCeEEEEEc-CCCccccceeeeeecCC-----ceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcC
Q 006808 212 KYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----AVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ 282 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~ 282 (630)
.|+++. .|+.|.+||. +.-+.. ...+.+. .......+.+ .....+++.+. .++|++|++.
T Consensus 209 nY~cs~--~dg~iAiwD~~rnienp----l~~i~~~~N~~~~~l~~~aycP-----trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 209 NYFCSN--SDGDIAIWDTYRNIENP----LQIILRNENKKPKQLFALAYCP-----TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred Cceecc--ccCceeeccchhhhccH----HHHHhhCCCCcccceeeEEecc-----CCcchhhhhccCcceEEEeccc
Confidence 787664 4999999993 332221 1111111 1233444433 12345555555 5689999864
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00054 Score=74.42 Aligned_cols=148 Identities=15% Similarity=0.123 Sum_probs=97.0
Q ss_pred CCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 17 LDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 17 g~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
.++|+.- .....|+-.|+.+|+.+.++..+.... -..+.|. . +.. .......++|-.+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~------------------~-K~a-qlt~e~tflGls~ 551 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPD------------------S-KFA-QLTNEQTFLGLSD 551 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc-eeEeccc------------------c-ccc-ccCCCceEEEECC
Confidence 3444433 346788889999999999998654321 1111111 0 000 0003346888889
Q ss_pred CeEEEEEccCCe--eeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 96 GDVLALAVSAGQ--LKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 96 g~v~iwd~~~~~--~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
..++.||++-.. ++.... .......+|++-+.+| +|+.|+.+|.|++||-...+....+.+.+.+|.+|..+.||
T Consensus 552 n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 552 NSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADG 630 (794)
T ss_pred CceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCC
Confidence 999999998643 321111 1233457788777666 79999999999999943323333466778899999999999
Q ss_pred CEEEEeC-CeEEEEEC
Q 006808 172 KMLATAA-GQLKTFNC 186 (630)
Q Consensus 172 ~~l~~~~-g~i~lwd~ 186 (630)
++|++.+ .-+.+++.
T Consensus 631 kwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 631 KWILATCKTYLLLIDT 646 (794)
T ss_pred cEEEEeecceEEEEEE
Confidence 9998887 67777765
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0096 Score=61.03 Aligned_cols=189 Identities=14% Similarity=0.154 Sum_probs=128.6
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
..+....++.|.+.|..+.........+. ....++++|+++.++.+.. ++++.+.|-.+++.+.+......+ ..
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~ 164 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG 164 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence 34444456789999988887776665454 6788999999988887765 689999999999888885544445 88
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceee-E----eecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCCcc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-K----FSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKK 234 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~-~----~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~~~ 234 (630)
++++|+|..++.+. +.|.++|..+....+ . ... ......+.++|+|.++.+....+ +.+...|..++..
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 99999999777665 899999976655442 1 111 22346789999999777765333 5788888877653
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCcccccc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRN 289 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~ 289 (630)
.. ........ ........ |+|.++.+... .+.+.+-|..+......
T Consensus 244 ~~--~~~~~~~~--~~~~v~~~-----p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 244 TA--TDLPVGSG--APRGVAVD-----PAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EE--eccccccC--CCCceeEC-----CCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 30 00111111 12223343 89998888744 57888888877655443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00091 Score=72.75 Aligned_cols=141 Identities=17% Similarity=0.327 Sum_probs=96.9
Q ss_pred CcEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCc--eeEE-e-
Q 006808 86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGS--LLGK-F- 155 (630)
Q Consensus 86 ~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-----~g~~l~s~~~dg~v~iwd~~~~~--~~~~-~- 155 (630)
..+|+.-- ....|+-.|+.+|+.+.........+|..++-.. +....+.|-.+..+..||.+-.. ++.. .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 34444433 3456999999999998777544444566664421 12345666677889999988532 2221 1
Q ss_pred -ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 156 -~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.......+|++-+.+| +||+|+ |.||+||--..+....+++-..||.+|..+.||++++++| +.+|.+++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 1234477888888888 556666 9999999533333445677789999999999999999987 678888886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.011 Score=63.17 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=90.7
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC---
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--- 94 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--- 94 (630)
..++.++.|+.|.-.|..+|+.+..+............+++ +.. +..+++++.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP------------~v~------------~g~Vivg~~~~~ 176 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP------------LVV------------KGKVITGISGGE 176 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCc------------EEE------------CCEEEEeecccc
Confidence 45677778999999999999998765421110000000000 000 334566543
Q ss_pred ---CCeEEEEEccCCeeeEEccCCCCC------------------------------CEE-EEEEecCCCEEEEEeCC--
Q 006808 95 ---GGDVLALAVSAGQLKWRLSDCHPG------------------------------GVS-AISFATHGSCIYSAGAD-- 138 (630)
Q Consensus 95 ---~g~v~iwd~~~~~~~~~~~~~h~~------------------------------~v~-~~~~s~~g~~l~s~~~d-- 138 (630)
+|.|.-+|..+|+.++++...... .+. .+++.|...+++.+..+
T Consensus 177 ~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~ 256 (527)
T TIGR03075 177 FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPS 256 (527)
T ss_pred cCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCC
Confidence 678999999999988765422111 111 33566656666655422
Q ss_pred ---C-----------cEEEEeCCCCceeEEeecCCCCe---------EEEEEccCCC---EEEEeC--CeEEEEECCCCc
Q 006808 139 ---G-----------MVCEIDPLTGSLLGKFRASTKGI---------SCMAVSSDGK---MLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 139 ---g-----------~v~iwd~~~~~~~~~~~~~~~~v---------~~l~~~p~~~---~l~~~~--g~i~lwd~~~~~ 190 (630)
+ .|.-.|+++|+..-.|+.....+ .-+.+..+|+ .++.+. |.++++|..+|+
T Consensus 257 p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 257 PWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred CCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 2 57778999999888777533222 1223334665 555666 899999999998
Q ss_pred ee
Q 006808 191 KM 192 (630)
Q Consensus 191 ~~ 192 (630)
.+
T Consensus 337 ~i 338 (527)
T TIGR03075 337 LL 338 (527)
T ss_pred ee
Confidence 75
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0021 Score=62.98 Aligned_cols=196 Identities=18% Similarity=0.179 Sum_probs=115.8
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC-----CC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~ 160 (630)
+.++.+--..+.|.-|+..+++.. .+ .+.+.+.++..-..+..|+++.. -+.+++..++..+..+... ..
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~-~~--~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~ 111 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKR-VF--PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLN 111 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceE-EE--ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcC
Confidence 345556666778999999877553 22 13344555555555556666633 3667777666553333211 13
Q ss_pred CeEEEEEccCCCEEEEeC-------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 161 GISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
..+.+.+.|+|.+.++.. |.++.++. .+..++.+..+-..-+.|+||||++.|+.+-+..+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 556788899998777532 34555554 4566666666556668899999999998887666888888
Q ss_pred EcCC--CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-cEEEEEcCCcccccccCce
Q 006808 228 RTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 228 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~ 293 (630)
++.. +...................-++.. .+|.+-+++...| .|.+|+.+ |+.+....-+
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-----adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-----ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEe-----CCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 8763 1111111111111122222333333 5666665444444 89999987 8777665544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.028 Score=58.69 Aligned_cols=194 Identities=12% Similarity=0.146 Sum_probs=107.2
Q ss_pred EeEECCCCCEEEEe-eCC----CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAIC-SGD----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
..++||||+++|.+ +.. .+|+|+|+.+|+.+...- .......+.|.+.+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~------- 181 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDG------- 181 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTS-------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCC-------
Confidence 35899999999865 333 359999999997764321 01112237777653
Q ss_pred CCcEEEEEeCC----------CeEEEEEccCCeee--EEccCCCCCC-EEEEEEecCCCEEEEEe-C--C-CcEEEEeCC
Q 006808 85 GSSLLVLGTGG----------GDVLALAVSAGQLK--WRLSDCHPGG-VSAISFATHGSCIYSAG-A--D-GMVCEIDPL 147 (630)
Q Consensus 85 ~~~~l~~~~~~----------g~v~iwd~~~~~~~--~~~~~~h~~~-v~~~~~s~~g~~l~s~~-~--d-g~v~iwd~~ 147 (630)
..++++.... ..|+.|.+.++... ..+....... ...+..++++++++..+ . + ..+.+.|+.
T Consensus 182 -~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 182 -KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp -SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred -CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 3344444333 12788888776432 1222222223 67889999999966543 2 2 357888887
Q ss_pred CC----ceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEE
Q 006808 148 TG----SLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 148 ~~----~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
.+ .....+......+....-+..+.+++... +.|...++.+... ...+..|...+.-..+...+.+|+
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 64 23333433344443333333555555443 5777788877652 224555655433344445566677
Q ss_pred EEeeCCC--eEEEEEcC
Q 006808 216 SSAVGER--YIALWRTD 230 (630)
Q Consensus 216 ~~~~~d~--~i~vwd~~ 230 (630)
..-..++ .|+++++.
T Consensus 341 l~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 341 LSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEETTEEEEEEEETT
T ss_pred EEEEECCccEEEEEECC
Confidence 6655455 68889988
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00081 Score=69.11 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=87.7
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCc--EEEEeCCCCceeEEeecCCCCeEEEEEccCCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~ 172 (630)
..+.++++.+++...... ..+.-...+|+|||+.++ +...||. |.+.|+..++..+ +....+.-..-.|+|+|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCC
Confidence 469999999887643332 234445678999999865 4456664 5666777666333 443333334678999999
Q ss_pred EEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCe--EEEEEcCCCc
Q 006808 173 MLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVK 233 (630)
Q Consensus 173 ~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~--i~vwd~~~~~ 233 (630)
.++..+ | .|.+++...+.. ..+....+.-..-.|+|+|++++..+..+|. |.+.++.++.
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 999887 3 788888877654 3343333333367899999999988744454 5555554443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=7e-05 Score=72.07 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=99.6
Q ss_pred EEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEE
Q 006808 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT 176 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~ 176 (630)
|++.+..+-+.. .+..+|...|.+++|+|..+ ++..++.+.+|++.|+++..++..+..+ ..+.+++|.-+...++.
T Consensus 175 v~~l~~~~fkss-q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSS-QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchh-hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 555555444443 35567888999999999766 6888999999999999999999988877 78999999987665555
Q ss_pred eC---CeEEEEECCCCc-eeeEeec--CCCCeEEEEE------eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 177 AA---GQLKTFNCSDHK-KMQKFSG--HPGAVRFMTF------SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 177 ~~---g~i~lwd~~~~~-~~~~~~~--h~~~v~~l~~------sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
++ |.|++||++..+ .+..+.+ ...+|..++. .+.|.+++ +++. .+..|.+.....- ..++...+
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv-~~lt--~l~f~ei~~s~~~-~p~vlele 328 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLV-FALT--VLQFYEIVFSAEC-LPCVLELE 328 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEE-eeeh--hhhhhhhhccccC-CCcccccC
Confidence 55 999999998754 2333322 1234444332 23343443 3322 3567776543321 23555666
Q ss_pred CCceeeeeEEe
Q 006808 245 HPAVFMDCRCI 255 (630)
Q Consensus 245 ~~~~~~~~~~~ 255 (630)
.++.++.....
T Consensus 329 ~pG~cismqy~ 339 (463)
T KOG1645|consen 329 PPGICISMQYH 339 (463)
T ss_pred CCcceeeeeec
Confidence 66666665554
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.7e-06 Score=85.24 Aligned_cols=192 Identities=10% Similarity=0.117 Sum_probs=123.4
Q ss_pred ECCCCCEEEEeeCCCcEEEEECCCCcEE-EEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 13 FSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+..+...++.|..+|.|.+-......-. +++ .| ++ ...+++++|++.+ .+.|++
T Consensus 66 y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~------------tp----~~-ar~Ct~lAwneLD--------tn~LAa 120 (783)
T KOG1008|consen 66 YGNDRCILAVGSATGNISLLSVRHPHDSSAEV------------TP----GY-ARPCTSLAWNELD--------TNHLAA 120 (783)
T ss_pred cCCchhhhhhccccCceEEeecCCccccccee------------cc----cc-ccccccccccccc--------HHHHHh
Confidence 3344458889999999998876543221 111 11 22 4578999999886 456666
Q ss_pred EeC----CCeEEEEEccCC--ee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeecCCCCe
Q 006808 92 GTG----GGDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGI 162 (630)
Q Consensus 92 ~~~----~g~v~iwd~~~~--~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v 162 (630)
|-. +..+.|||+.++ .+ -..+..+.-....+++|-.+.+.+.+|.....+.++|++... ....+ ....+
T Consensus 121 gldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~v 198 (783)
T KOG1008|consen 121 GLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYV 198 (783)
T ss_pred hhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhc
Confidence 643 334999999877 21 122222233456688998888889999999899999987321 11112 23356
Q ss_pred EEEEEcc-CCCEEEEeC-CeEEEEE-CCCCc-eeeEeecCC----CCeEEEEEeeCCcE-EEEEeeCCCeEEEEEcCC
Q 006808 163 SCMAVSS-DGKMLATAA-GQLKTFN-CSDHK-KMQKFSGHP----GAVRFMTFSDNGKY-VLSSAVGERYIALWRTDG 231 (630)
Q Consensus 163 ~~l~~~p-~~~~l~~~~-g~i~lwd-~~~~~-~~~~~~~h~----~~v~~l~~sp~~~~-l~~~~~~d~~i~vwd~~~ 231 (630)
..+.+.| .+.++++-. |.|-+|| ..+-+ ++..+...+ ..+..++|.|...- +++.....++|+++++..
T Consensus 199 qG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6788888 778888877 9999999 43322 222222122 24889999996543 444443457899999864
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.005 Score=68.05 Aligned_cols=200 Identities=13% Similarity=0.207 Sum_probs=122.7
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
..+..+.+... ...+++++..|.|.+.|+.+.... +...-..+|.+++|+||+..++..+..+++.+-+
T Consensus 69 ~~i~s~~fl~d---------~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLAD---------TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred cceEEEEEecc---------cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 34555666554 566899999999999998887652 2223457899999999999998888877776653
Q ss_pred C----CC-------------------CceeEEeecCC---------------------CCeEEEEEccCCCEEEEeC---
Q 006808 146 P----LT-------------------GSLLGKFRAST---------------------KGISCMAVSSDGKMLATAA--- 178 (630)
Q Consensus 146 ~----~~-------------------~~~~~~~~~~~---------------------~~v~~l~~~p~~~~l~~~~--- 178 (630)
- -. |+....|++.. ..=.++.|.-||.++|+..
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 2 11 11111222111 1123589999999999843
Q ss_pred ----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceeeeeecCCceeeee
Q 006808 179 ----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 179 ----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (630)
..|++||-. |..-.+-....+.-.+++|-|.|..+++... .|+.|.+|.-..-... ......+.....+.-
T Consensus 218 ~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg--~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG--EFVLPFPLDEKEVEE 294 (1265)
T ss_pred cCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc--ccccCCcccccchhe
Confidence 589999976 5432211122334467899999998887432 2457888876554322 111222222222444
Q ss_pred EEecCCccCCCCCEEEE---EecCCcEEEEEcCCc
Q 006808 253 RCIDNGGVDDAGLYVLA---ISETGVCYIWYGQNI 284 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s---~s~dg~i~iwd~~~~ 284 (630)
++|+ .++..|++ ......|++|-..+.
T Consensus 295 L~Wn-----s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 295 LAWN-----SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeec-----CCCCceeeeecccccceEEEEEecCe
Confidence 5555 57777776 333335999976543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.015 Score=56.90 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=124.3
Q ss_pred CCCCCEEEEeeCCCcEEEEECC-CCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 14 SPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 14 s~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
...++.|+.|..+| +.+++.. .......... ..+..+.-.+. -+. +..
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--------------------~~I~ql~vl~~---------~~~-llv 52 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--------------------SSITQLSVLPE---------LNL-LLV 52 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeec--------------------ceEEEEEEecc---------cCE-EEE
Confidence 34678999998888 8999983 2222222110 01333333332 222 333
Q ss_pred eCCCeEEEEEccCCeeeEEc-------------cCCCCCCEEEEE--EecCCCEEEEEeCCCcEEEEeCCCC-----cee
Q 006808 93 TGGGDVLALAVSAGQLKWRL-------------SDCHPGGVSAIS--FATHGSCIYSAGADGMVCEIDPLTG-----SLL 152 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~-------------~~~h~~~v~~~~--~s~~g~~l~s~~~dg~v~iwd~~~~-----~~~ 152 (630)
-.|+.+.++++..-...... .......+..++ -...+...+++....+|.+|..... +..
T Consensus 53 Lsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 53 LSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred EcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 34599999998754433210 112334455555 1223444444445558888876542 455
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecC------------CCCeEEEEEeeCCcEEEEEee
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+.+.. ...+.+++|. ++.++.|. +...+.|+.++.....+... ..++..+.. +++.+|++.
T Consensus 133 ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-- 206 (275)
T PF00780_consen 133 KEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-- 206 (275)
T ss_pred EEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence 55664 3677899998 45677765 78999999977654333211 123333333 445666542
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEE
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (630)
+..-.+.+... +.. ......... ........ ..||++.+.+ .|.||++.+++.++........
T Consensus 207 -~~~g~fv~~~G-~~~-r~~~i~W~~--~p~~~~~~--------~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 207 -DNIGVFVNKNG-EPS-RKSTIQWSS--APQSVAYS--------SPYLIAFSSN-SIEVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred -cceEEEEcCCC-CcC-cccEEEcCC--chhEEEEE--------CCEEEEECCC-EEEEEECcCCcEEEEEECCCEE
Confidence 44444444433 222 112223322 22233333 3577777664 5999999999887766544433
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00039 Score=70.94 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=62.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| +|++++|+.+.|+.|+.||.|.+||..++..... + .....+.++|+|.
T Consensus 259 ~s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-------------------a~~~P~~iaWHp~------ 310 (545)
T PF11768_consen 259 PSQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-------------------AEFIPTLIAWHPD------ 310 (545)
T ss_pred CCcc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-------------------ecccceEEEEcCC------
Confidence 3566 7889999999999999999999999877643321 1 1234568889886
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEcc
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS 113 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~ 113 (630)
+.++++|+..|.+.+||+.-+.....+.
T Consensus 311 ---gai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 311 ---GAIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred ---CcEEEEEcCCceEEEEEeecCccceeec
Confidence 7889999999999999998765544443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=74.13 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=68.4
Q ss_pred EEEEEccCCeee--EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEE
Q 006808 98 VLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (630)
Q Consensus 98 v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 175 (630)
-++|++..++.. ........+.|.+++++|+...++.|+.||.|.+||...+... +....-.++.++|+|+|.+++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 346666554321 1111246788999999999999999999999999998766332 222344678999999999999
Q ss_pred EeC--CeEEEEECCCCc
Q 006808 176 TAA--GQLKTFNCSDHK 190 (630)
Q Consensus 176 ~~~--g~i~lwd~~~~~ 190 (630)
+|+ |.+.+||+.-..
T Consensus 316 V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCceEEEEEeecCc
Confidence 998 999999986544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0086 Score=63.67 Aligned_cols=195 Identities=13% Similarity=0.199 Sum_probs=114.3
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC-cEEEEEeCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS-SLLVLGTGG 95 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~l~~~~~~ 95 (630)
+..+..++.++.|.-.|..+|+.+..+......... .+. ..... ...+ + ..+++++.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~---~~~----~~~~g--~~~~------------~~~~V~v~~~~ 119 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRG---CCD----VVNRG--VAYW------------DPRKVFFGTFD 119 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccc---ccc----cccCC--cEEc------------cCCeEEEecCC
Confidence 345666777899999999999988776532210000 000 00000 0000 3 678899999
Q ss_pred CeEEEEEccCCeeeEEccCCCCC----CEE-EEEEecCCCEEEEEe---------CCCcEEEEeCCCCceeEEeecCCCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPG----GVS-AISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~----~v~-~~~~s~~g~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
|.|.-+|..+|+.++++...... .+. +..+. +..++.++ .++.+..+|..+|+.+-.+......
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 99999999999998877532110 011 11222 24455553 3678999999999988776542110
Q ss_pred --------------------e-EEEEEccCCCEEEEeC--C------------------eEEEEECCCCceeeEeec--C
Q 006808 162 --------------------I-SCMAVSSDGKMLATAA--G------------------QLKTFNCSDHKKMQKFSG--H 198 (630)
Q Consensus 162 --------------------v-~~l~~~p~~~~l~~~~--g------------------~i~lwd~~~~~~~~~~~~--h 198 (630)
+ ...++.+.+..+++++ + .|.-+|..+|+.+-.+.. |
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 1 1234454455666654 3 699999999998776542 2
Q ss_pred CC----CeEEEEEe----eCCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 199 PG----AVRFMTFS----DNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 199 ~~----~v~~l~~s----p~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.. ......+. -++. .+++++ .+|.+...|..+++..
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~ 324 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLI 324 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEe
Confidence 11 00111111 1232 455554 6899999999998855
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00072 Score=69.47 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=108.5
Q ss_pred eEeEECCCCCEEEEeeC---C-CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 9 ILTSFSPALDYFAICSG---D-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~---d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+.-+|+|++..++..+- . ..+.++++.+++...... ..+......|+|+ .
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspD------------------G------- 249 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPD------------------G------- 249 (425)
T ss_pred eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCC------------------C-------
Confidence 45589999988776532 2 358899998887654433 1122222333333 1
Q ss_pred CCcEEEEEeCCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCc--EEEEeCCCCceeEEeecCC
Q 006808 85 GSSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGM--VCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 85 ~~~~l~~~~~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~ 159 (630)
..++++...+|. |+++|+.++... ++. .-.+.-+.-.|+|+|+.++-.+ ..|. |.+.++..+.. ..+....
T Consensus 250 -~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~ 325 (425)
T COG0823 250 -SKLAFSSSRDGSPDIYLMDLDGKNLP-RLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG 325 (425)
T ss_pred -CEEEEEECCCCCccEEEEcCCCCcce-ecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC
Confidence 344555666676 788888887743 332 2223334678999999976554 4554 55566665544 3333233
Q ss_pred CCeEEEEEccCCCEEEEeC---Ce--EEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 160 KGISCMAVSSDGKMLATAA---GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
..-..-.|+|+|++++..+ |. |.+.|+.++..++.+. +......-.|.|+++.++..+
T Consensus 326 ~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 326 GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 3223778999999998876 43 6777776665444333 333444557788888777655
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.01 Score=59.50 Aligned_cols=179 Identities=18% Similarity=0.168 Sum_probs=102.7
Q ss_pred CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC---------C-C
Q 006808 27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---------G-G 96 (630)
Q Consensus 27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---------~-g 96 (630)
..|++.|..+.+.+..+.-. ....++++.-........ ....+|++|+. . |
T Consensus 2 s~i~l~d~~~~~~~~~~~l~-----------------~~E~~~s~~~~~l~~~~~--~~~~~ivVGT~~~~~~~~~~~~G 62 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE-----------------PNEHVTSLCSVKLKGDST--GKKEYIVVGTAFNYGEDPEPSSG 62 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE-----------------TTEEEEEEEEEEETTS-----SSEEEEEEEEE--TTSSS-S-E
T ss_pred cEEEEEeCCCCeEEEEEECC-----------------CCceEEEEEEEEEcCccc--cccCEEEEEecccccccccccCc
Confidence 35788888888777655411 122233333222221100 01567888876 2 8
Q ss_pred eEEEEEccCC-----eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeec-CCCCeEEEEEcc
Q 006808 97 DVLALAVSAG-----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA-STKGISCMAVSS 169 (630)
Q Consensus 97 ~v~iwd~~~~-----~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~-~~~~v~~l~~~p 169 (630)
.|.++++... +..........++|++++-- +| +|+++ ..+.|.+|++...+ ....-.. ....+.++...
T Consensus 63 ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~- 138 (321)
T PF03178_consen 63 RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF- 138 (321)
T ss_dssp EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence 8999999884 32222222456889999876 34 44444 35789999998777 4333221 22255555554
Q ss_pred CCCEEEEeC--CeEEEE--ECCCCceeeEee--cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 170 DGKMLATAA--GQLKTF--NCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lw--d~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+.++++|+ ..+.++ +....+ +..+. .....++++.|-+++..++++. .+|.+.++....
T Consensus 139 -~~~I~vgD~~~sv~~~~~~~~~~~-l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 -KNYILVGDAMKSVSLLRYDEENNK-LILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNP 203 (321)
T ss_dssp -TTEEEEEESSSSEEEEEEETTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-S
T ss_pred -ccEEEEEEcccCEEEEEEEccCCE-EEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECC
Confidence 56888887 666655 542222 22222 2345688999987777666665 699999998764
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0016 Score=69.15 Aligned_cols=186 Identities=17% Similarity=0.251 Sum_probs=114.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC-EEEEEEecCCCEEEEEeCCC-----cEEEEeCCC------Ccee-
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAGADG-----MVCEIDPLT------GSLL- 152 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~------~~~~- 152 (630)
+..++.|+.+|.|.+++-.-. ....+ .++... |..+....+.++|++.+.|+ .+++|++.. .+++
T Consensus 35 ~~~vvigt~~G~V~~Ln~s~~-~~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNSSFQ-LIRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CceEEEeeccccEEEecccce-eeehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 678999999999988874322 11222 345555 44444433446788877664 599999863 2344
Q ss_pred --EEee----cCCCCeEEEEEccCCCEEEEeC--CeEEEEEC--CCCceeeEe--ecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 153 --GKFR----ASTKGISCMAVSSDGKMLATAA--GQLKTFNC--SDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 153 --~~~~----~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~--~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
+.+. ....++.+++++.+-+.+|+|- |.|..+.- ...+-.+.- .....+|++++|..+++.++.+. .
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-T 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-T 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-e
Confidence 2222 1245889999999988888886 88887742 111111222 22356999999998887722222 2
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
-..|.+|.+.... + ....+.+++....|..++ +....+++++. ..+.+|+.+..
T Consensus 192 t~~V~~y~l~gr~-p---~~~~ld~~G~~lnCss~~-----~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 192 TEQVMLYSLSGRT-P---SLKVLDNNGISLNCSSFS-----DGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred cceeEEEEecCCC-c---ceeeeccCCccceeeecC-----CCCccEEEecC-ceEEEEcCCCc
Confidence 4479999998443 2 234466777777888776 33332444333 47899987643
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.032 Score=54.36 Aligned_cols=194 Identities=13% Similarity=0.176 Sum_probs=121.3
Q ss_pred eEECCCCCEEEEeeC--CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 11 ~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|.||++++.... -..|.|-|+..++.+.++..+. |..-.|.. +.-
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----------------------C~~iyP~~--------~~~ 149 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----------------------CWLIYPSG--------NRG 149 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----------------------EEEEEEEE--------TTE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----------------------EEEEEecC--------CCc
Confidence 388999998887653 5679999999999888775211 22223332 345
Q ss_pred EEEEeCCCeEEEEEcc-CCeeeE---EccCCCCCCEE-EEEEecCCCEEEEEeCCCcEEEEeCCCCce--eEEeecC---
Q 006808 89 LVLGTGGGDVLALAVS-AGQLKW---RLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFRAS--- 158 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~-~~~~~~---~~~~~h~~~v~-~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~--- 158 (630)
+.+-|.||.+.-..+. .|+... .++.....++. .-++...+..++-.+..|.|+-.|+..... ...+...
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcc
Confidence 8899999998888886 444321 22222223332 334555555666677899999888765432 2222211
Q ss_pred -------CCCeEEEEEccCCCEEEEeC------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCc-EEEEEe
Q 006808 159 -------TKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSA 218 (630)
Q Consensus 159 -------~~~v~~l~~~p~~~~l~~~~------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~~~~ 218 (630)
.+.-.-+++++....|.+.. ..|.+||+.+++.+.++.. ..++.+|..+.+.+ +|++.+
T Consensus 230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~ 308 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALS 308 (342)
T ss_dssp HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEE
T ss_pred ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEc
Confidence 12334577877555554432 2789999999999988873 34678999998776 555544
Q ss_pred eCCCeEEEEEcCCCccc
Q 006808 219 VGERYIALWRTDGVKKQ 235 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~ 235 (630)
..++.|.+||..+++..
T Consensus 309 ~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 309 AGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTTTEEEEEETTT--EE
T ss_pred CCCCeEEEEeCcCCcEE
Confidence 45789999999998754
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.02 Score=56.84 Aligned_cols=191 Identities=12% Similarity=0.038 Sum_probs=100.6
Q ss_pred CcEEEEEeCCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
..+|+.+..+|. +.+.|+.+++.. ++..+-.....+..++|+.+.++-......++..|+.+.+....+......+-
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred CEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 345555555655 888899998876 33332222233566778888876665667899999999887666666666554
Q ss_pred EEEE--ccCCCEEEEeC------------------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 164 CMAV--SSDGKMLATAA------------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 164 ~l~~--~p~~~~l~~~~------------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
...| +.++..++..- ..|.-.|+.+|+....+. -...+..+.|+|....+++-
T Consensus 127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEE
T ss_pred ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEE
Confidence 4555 34666655431 136667888887544443 45678899999987777776
Q ss_pred eeCCC-----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-----CCcEEEEEcCCccc
Q 006808 218 AVGER-----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEE 286 (630)
Q Consensus 218 ~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~ 286 (630)
|- .| .-+||-+++..... ..+... .....+.--+|. |||..|.--+. +..|.-+|..+++.
T Consensus 206 CH-EGpw~~Vd~RiW~i~~dg~~~-~~v~~~-~~~e~~gHEfw~-----~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 206 CH-EGPWDLVDQRIWTINTDGSNV-KKVHRR-MEGESVGHEFWV-----PDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EE--S-TTTSS-SEEEEETTS----EESS----TTEEEEEEEE------TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred ec-cCCcceeceEEEEEEcCCCcc-eeeecC-CCCccccccccc-----CCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 53 33 13667665443221 122221 234555555665 89987765433 22456667777643
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.013 Score=59.84 Aligned_cols=216 Identities=14% Similarity=0.178 Sum_probs=112.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE--Eeccc-------------ccccccc----------cccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADI-------------ASTETTS----------LYGNRLEREH 63 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~-------------~~~~~~~----------~~s~~~~~~~ 63 (630)
..+.|+++.--||+|-..|.|.||.+...+... ..... .+....+ .|.|...-.-
T Consensus 5 ~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~ 84 (395)
T PF08596_consen 5 THVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDA 84 (395)
T ss_dssp EEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE--
T ss_pred EEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheec
Confidence 455999998899999999999999876443221 00000 0000000 0111000000
Q ss_pred cccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEcc-------CCCCCCEEEEEEec-----CC--
Q 006808 64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-------DCHPGGVSAISFAT-----HG-- 129 (630)
Q Consensus 64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-------~~h~~~v~~~~~s~-----~g-- 129 (630)
....+++++-. +-.++++|..+|.+.|.|++....+..-. ......|+++.|.- |+
T Consensus 85 ~~g~vtal~~S----------~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 85 KQGPVTALKNS----------DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp -S-SEEEEEE-----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred cCCcEeEEecC----------CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 02234444432 26789999999999999998887765421 12345688898863 33
Q ss_pred -CEEEEEeCCCcEEEEeCCC---Cce----eEEeecCCCCeEEEE-EccC---------------------CCEEEEeC-
Q 006808 130 -SCIYSAGADGMVCEIDPLT---GSL----LGKFRASTKGISCMA-VSSD---------------------GKMLATAA- 178 (630)
Q Consensus 130 -~~l~s~~~dg~v~iwd~~~---~~~----~~~~~~~~~~v~~l~-~~p~---------------------~~~l~~~~- 178 (630)
-.+++|...|.+.+|.+.- +.- ......+.++|..+. |+.+ ..++++++
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 3588999999999998741 111 111223445555544 3211 12455555
Q ss_pred CeEEEEECCCCceeeEeecCCCCeEEEEEe-----eCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----DNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 179 g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----p~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
..++++...+.+...........+..+.+- ..+..|++-. .+|.|++|.+..-+..
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEI 295 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHh
Confidence 899999998877654443232334445553 2445555555 6999999999987754
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.018 Score=59.01 Aligned_cols=193 Identities=12% Similarity=0.140 Sum_probs=131.0
Q ss_pred EeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++++.+. .+++...++.|.+.|..+........... . ...+++.+. +..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~------------------P~~~~~~~~---------~~~ 129 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-G------------------PVGLAVDPD---------GKY 129 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-C------------------CceEEECCC---------CCE
Confidence 347888887 44455556899999987777666543211 1 122333333 444
Q ss_pred EEEEeC---CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeE-E----eecCC
Q 006808 89 LVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-K----FRAST 159 (630)
Q Consensus 89 l~~~~~---~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~-~----~~~~~ 159 (630)
++++.. ++.+.+.|..++........+. .+ ..+++.|+|+.++.+. .++.|.+.|.......+ . .. ..
T Consensus 130 vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~ 206 (381)
T COG3391 130 VYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VG 206 (381)
T ss_pred EEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cC
Confidence 555554 5779999999998887755443 33 8999999999776665 78899999977665553 1 22 12
Q ss_pred CCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.....+.++|+|.++.+.. +.+...|..++..... ..........+.++|+|.++.+.-+..+.+.+.|..+..
T Consensus 207 ~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 207 TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 2346789999999776664 3788889888876554 221111456789999999988886556788888887765
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.019 Score=57.02 Aligned_cols=194 Identities=11% Similarity=0.124 Sum_probs=92.2
Q ss_pred EECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 12 SFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 12 ~fs~dg~~las~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+|.+||+.|+.++. || .+.+.|+.+++..+--.+..........+++ .+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---------------------------~~~ 94 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---------------------------DRA 94 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT---------------------------SSE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC---------------------------CCe
Confidence 68889987777665 44 5666788888765432221111111222221 344
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEEe---CC-------------------CcEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAG---AD-------------------GMVCEI 144 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~---~d-------------------g~v~iw 144 (630)
++....+..|.-.|+.+.+....+ ......+-...|. .++..++-.- .| +.|...
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 555555667888898887753222 2233444445553 3555543221 11 346666
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccC-CCEEEEeC-C-----eEEEEECCC-CceeeEeecCC--CCeEEEEEeeCCcEE
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSD-GKMLATAA-G-----QLKTFNCSD-HKKMQKFSGHP--GAVRFMTFSDNGKYV 214 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~-~~~l~~~~-g-----~i~lwd~~~-~~~~~~~~~h~--~~v~~l~~sp~~~~l 214 (630)
|+.+|+....+. ....+..+.|+|. ..+|+.|- | .-+||-+++ +...+.+..+. ..+..=-|.|+|..+
T Consensus 174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 888887655555 4557788999994 45555554 2 236665543 33333333232 234455789999877
Q ss_pred EEEee----CCCeEEEEEcCCCcc
Q 006808 215 LSSAV----GERYIALWRTDGVKK 234 (630)
Q Consensus 215 ~~~~~----~d~~i~vwd~~~~~~ 234 (630)
..-+. .+..|.-+++.+++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--E
T ss_pred EEEeecCCCCceEEEeeCCCCCCc
Confidence 66432 244677777877653
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00046 Score=71.52 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=84.2
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE-EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee
Q 006808 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM 192 (630)
Q Consensus 116 h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~ 192 (630)
|...|.=-++...+++++.|+.-|.+++|+-..++... +..+..+.+..+.++++..++|.|+ |.|.++-+..+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34445555566678899999999999999966655432 2223444666777888888888877 88888887764321
Q ss_pred -----eEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 193 -----QKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 193 -----~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..+ ..|...|++++|++++..+++|. ..|+|..-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEech
Confidence 111 24678999999999999999987 488888888777
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00041 Score=72.94 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=81.0
Q ss_pred EEEEEecCCCEEEEEe----CCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE
Q 006808 121 SAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 121 ~~~~~s~~g~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~ 194 (630)
+-..|+|...+|+.++ ..|.|.||- .+|++.+...- .-.+++++|+|..-.|+.|- |.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 4457888888887775 567888885 56665433221 12356799999877777775 8999999877665555
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
...|+.+|..+.|||+|..++++. .-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence 567999999999999999999876 57899999876
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.093 Score=49.65 Aligned_cols=186 Identities=11% Similarity=0.143 Sum_probs=96.5
Q ss_pred eEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++|+|+.. ++|+....+.|..++. +|+.+..+.-. + ..+.-.+++.- +..+
T Consensus 27 LTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~---------------g--~~D~EgI~y~g----------~~~~ 78 (248)
T PF06977_consen 27 LTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD---------------G--FGDYEGITYLG----------NGRY 78 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S---------------S---SSEEEEEE-S----------TTEE
T ss_pred cEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC---------------C--CCCceeEEEEC----------CCEE
Confidence 39999765 5556666788888886 58887776521 1 11333444432 3344
Q ss_pred EEEe-CCCeEEEEEccCCe----e--eE--E--ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC---CceeEE-
Q 006808 90 VLGT-GGGDVLALAVSAGQ----L--KW--R--LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---GSLLGK- 154 (630)
Q Consensus 90 ~~~~-~~g~v~iwd~~~~~----~--~~--~--~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~---~~~~~~- 154 (630)
++.. .++.+.++++.... . .. . +...+...+-+++|.|.++.|+.+-...-..++.+.. ...+..
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 5555 47888888883321 1 11 1 1123556799999999888888776665555665543 111111
Q ss_pred ----e---ecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCCCceeeEeecCC---------CCeEEEEEeeCCcEEE
Q 006808 155 ----F---RASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYVL 215 (630)
Q Consensus 155 ----~---~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~l~ 215 (630)
+ ......+.+++++|.. .+++... ..|..+| .+|+.+..+.-.. ...-.|+|.++|+..+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 1123467899999954 4455544 7888999 6777665553211 2467899999997655
Q ss_pred EEeeCCCeEEEE
Q 006808 216 SSAVGERYIALW 227 (630)
Q Consensus 216 ~~~~~d~~i~vw 227 (630)
+ + +-+..++|
T Consensus 238 v-s-EpNlfy~f 247 (248)
T PF06977_consen 238 V-S-EPNLFYRF 247 (248)
T ss_dssp E-E-TTTEEEEE
T ss_pred E-c-CCceEEEe
Confidence 4 4 45555443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.013 Score=58.74 Aligned_cols=175 Identities=10% Similarity=0.107 Sum_probs=99.4
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEec---C----CCEEEEEeC----------CCcEEEEeCCCC----ceeEEe
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFAT---H----GSCIYSAGA----------DGMVCEIDPLTG----SLLGKF 155 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~---~----g~~l~s~~~----------dg~v~iwd~~~~----~~~~~~ 155 (630)
.|++.|..+.+.+..+.-.....+.+++... + ..+|+.|+. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5778888777765444333334455544432 2 356666642 288999999874 122221
Q ss_pred --ecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCc-eeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 156 --RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHK-KMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 156 --~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~-~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
....++|++++-- ++.++++.++.|++|++...+ ...... .....+.++... +.+++++.. -+.+.++....
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~-~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDA-MKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEES-SSSEEEEEEET
T ss_pred EEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEc-ccCEEEEEEEc
Confidence 2246789888876 555556666899999998877 433322 123355555544 668888774 55567665443
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.... ...+..-..+..+..+... +++..++++..+|.+.++...
T Consensus 159 ~~~~-l~~va~d~~~~~v~~~~~l------~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 159 ENNK-LILVARDYQPRWVTAAEFL------VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTE--EEEEEEESS-BEEEEEEEE-------SSSEEEEEETTSEEEEEEE-
T ss_pred cCCE-EEEEEecCCCccEEEEEEe------cCCcEEEEEcCCCeEEEEEEC
Confidence 2111 0112222223334444444 455699999999999999864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.01 Score=53.52 Aligned_cols=199 Identities=12% Similarity=0.120 Sum_probs=115.0
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC---CEEEEEeCCCcEEEEeCC--CCceeEEee---c
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPL--TGSLLGKFR---A 157 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~~~dg~v~iwd~~--~~~~~~~~~---~ 157 (630)
++++.+--..|.|+-||..+++.......+ .+..++.+--.| .+.+.++.--.|--||.. .....+++. .
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 667777777888888999887765443322 224445553333 233444444456667733 223333311 1
Q ss_pred --CCCCeEEEEEccCCCEEEEeC-----------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 158 --STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 158 --~~~~v~~l~~~p~~~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
.......-..+|+|++++-.. |.++.|-. +..+..+...-+--+.++|+.+.+.+....+.+-.|
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 123556667899999855432 23444432 222222222233346789998888887776667788
Q ss_pred EEEE--cCCCccccceeeeeecC----CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 225 ALWR--TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 225 ~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.-|| ..++.......++.+.. ......-+++. .+|.+.+++-..|+|.-+|..+|+.+.+.+-+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-----~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-----TEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-----cCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 7787 66665443344444433 12222333333 56777777777889999999999998876543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.034 Score=54.18 Aligned_cols=177 Identities=16% Similarity=0.162 Sum_probs=108.5
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCceeEEeecCCC-----
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRASTK----- 160 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~----- 160 (630)
+.+.++|..+++.+..+..+. .-.+..+|+|+.+++++ ....|.+||..+-.+...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 479999999999876665443 34467899999988753 344799999999887775443322
Q ss_pred --CeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 --~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
....++++++|+++++.. .+|.|.|+..++.+.++... .+..+-=+++ +.|.+-| .||.+.-..+....+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC-~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLC-GDGSLLTVTLDADGK 169 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEE-TTSCEEEEEETSTSS
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEe-cCCceEEEEECCCCC
Confidence 223468899999999876 69999999999988877632 2222222333 3455666 599998888874332
Q ss_pred ccceeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 235 QSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
........+.. ......-..+. ..+..++-.+.+|.|+--|+...
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~-----~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYS-----RDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEE-----TTTTEEEEEBTTSEEEEEEETTS
T ss_pred EeEeeccccCCCCcccccccceE-----CCCCeEEEEecCCEEEEEeccCC
Confidence 21111111111 11122122222 34455555788888888776443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.014 Score=60.43 Aligned_cols=131 Identities=11% Similarity=0.182 Sum_probs=75.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
++++++ +++|...||.....+.. ..+....++|.+.+ .+++-...++|.++.--..+....++.. ..+..+
T Consensus 44 gr~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I 114 (443)
T PF04053_consen 44 GRFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI 114 (443)
T ss_dssp SSEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred CCEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence 566666 77888888874443332 12445678898854 5677766888999632222222233322 123333
Q ss_pred EEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 166 ~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
-. |.+|+..+ +.|.+||+.+++.++.+... +|..+.|+++|.+++..+ +..+.+++....
T Consensus 115 f~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~~i~il~~~~~ 175 (443)
T PF04053_consen 115 FG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KDSIYILKYNLE 175 (443)
T ss_dssp E----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-SEEEEEE-HH
T ss_pred Ec---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CCeEEEEEecch
Confidence 22 77777777 77999999999999988733 489999999999999886 456788775543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.022 Score=45.60 Aligned_cols=102 Identities=18% Similarity=0.280 Sum_probs=64.7
Q ss_pred cceeEe-EECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 6 IRDILT-SFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 6 V~~~~~-~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
|+++|+ .|..|| +.|++||.|..||||+- ...+.++.... .++++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-------------------~v~~L~~~~-------- 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-------------------KVTSLCSLG-------- 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-------------------ceEEEEEcC--------
Confidence 445533 355565 58999999999999974 45666665321 233333222
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec---CCC-EEEEEeCCCcEE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVC 142 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~---~g~-~l~s~~~dg~v~ 142 (630)
...++.+..+|+|-+|+-. ..+++.... ..++++.+.. +|. -|++|-.+|.|-
T Consensus 53 --~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 --GGRFAYALANGTVGVYDRS--QRLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --CCEEEEEecCCEEEEEeCc--ceeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4568999999999999763 334455333 3367776654 332 488888888763
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0041 Score=67.81 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=71.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+..+++|+..|.|...|+..+-........-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+.+.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 55689999999999998876522111112345799999999999999999999999999999999999888777655544
Q ss_pred ---EEccCCCEEEEeC
Q 006808 166 ---AVSSDGKMLATAA 178 (630)
Q Consensus 166 ---~~~p~~~~l~~~~ 178 (630)
.+..++..++++.
T Consensus 179 i~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSD 194 (1206)
T ss_pred EEEEEeCCCcEEEEcc
Confidence 4455666777776
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.065 Score=57.80 Aligned_cols=127 Identities=12% Similarity=0.138 Sum_probs=71.1
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------------CcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
.|.+++... .. ..+..+. ..+.-.|+|+|..+++.... +.+.+.++..+.... .....|..
T Consensus 380 ~Lwv~~~gg-~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Iss 452 (591)
T PRK13616 380 SLWVGPLGG-VA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISE 452 (591)
T ss_pred EEEEEeCCC-cc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCe
Confidence 355656432 22 2333332 37888999998887776532 223333443333222 23457999
Q ss_pred EEEccCCCEEEEeC-CeEEE---EECCCCce-e---eEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 165 MAVSSDGKMLATAA-GQLKT---FNCSDHKK-M---QKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 165 l~~~p~~~~l~~~~-g~i~l---wd~~~~~~-~---~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
+.|+|||..++... +.|++ -....|.. + ..+ .+-...+.++.|.+++..++.....+..+...++.
T Consensus 453 l~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 453 LQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred EEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecC
Confidence 99999999888766 77776 44444531 1 112 22233468899999998554433222334444444
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.042 Score=56.06 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=105.3
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..++|+++ +.|.=| ++|.|..+|.+.|.|+.....+..-.-.. .+........++++.|....-...
T Consensus 85 ~~g~vtal--~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~----------~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 85 KQGPVTAL--KNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE----------SFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp -S-SEEEE--EE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG------------T-SS----EEEEEEEEEE-TTS
T ss_pred cCCcEeEE--ecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------cccccccccCeeEEEEEEEecCCC
Confidence 46889444 877555 99999999999999997777665422111 001123344566777753211100
Q ss_pred cccCCcEEEEEeCCCeEEEEEccC---CeeeEE---ccCCCCCCEEEEE-EecCC-C-------------------EEEE
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSA---GQLKWR---LSDCHPGGVSAIS-FATHG-S-------------------CIYS 134 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~---~~~~~~---~~~~h~~~v~~~~-~s~~g-~-------------------~l~s 134 (630)
....-.+++|+..|.+.+|.+.- +..... ....+.++|..+. |+.+. . .++.
T Consensus 152 -~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 152 -GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp -SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred -cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 00034688999999999997741 221111 1124556666665 33221 1 2333
Q ss_pred EeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc-----CCCEEEEeC--CeEEEEECCCCceeeEeecCC----CCeE
Q 006808 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-----DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----GAVR 203 (630)
Q Consensus 135 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-----~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~----~~v~ 203 (630)
...+..++++...+.+..++..........+.+-+ .+..|++-. |.|++|.+..-+.+..+.-+. ..+.
T Consensus 231 vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~ 310 (395)
T PF08596_consen 231 VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS 310 (395)
T ss_dssp EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc
Confidence 34466799999988877666442222333445532 333444333 999999999888877765432 2344
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
...|+++|..++..+ ...+.++.+
T Consensus 311 ~ssis~~Gdi~~~~g--psE~~l~sv 334 (395)
T PF08596_consen 311 SSSISRNGDIFYWTG--PSEIQLFSV 334 (395)
T ss_dssp T-EE-TTS-EEEE-S--SSEEEEEEE
T ss_pred ccEECCCCCEEEEeC--cccEEEEEE
Confidence 566788888766654 334444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.16 Score=51.84 Aligned_cols=73 Identities=11% Similarity=0.231 Sum_probs=49.9
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEe----eC----------------CcEEEEEe
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS----DN----------------GKYVLSSA 218 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s----p~----------------~~~l~~~~ 218 (630)
.+.+++.+|++++.|+.+ |.|.++|+.++..++.++|....- +.|. +. ..+|+.=.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 467899999999888887 999999999998888777654421 1111 00 12344433
Q ss_pred eCCCeEEEEEcCCCccc
Q 006808 219 VGERYIALWRTDGVKKQ 235 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~ 235 (630)
-.-|.|.||.++.+...
T Consensus 387 prRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRV 403 (415)
T ss_pred ccCCeEEEEecCCCCEE
Confidence 35677888888777643
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.19 Score=47.42 Aligned_cols=175 Identities=11% Similarity=0.105 Sum_probs=108.1
Q ss_pred EECCCCCEEEEeeCCC--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.|..+|.++-+.+.-| .|+.+|+.+|+......-.. ...+..++.+ ++.+.
T Consensus 51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------~~FgEGit~~-------------~d~l~ 103 (264)
T PF05096_consen 51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------RYFGEGITIL-------------GDKLY 103 (264)
T ss_dssp EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--------------T--EEEEEEE-------------TTEEE
T ss_pred EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--------------cccceeEEEE-------------CCEEE
Confidence 4556777777766544 79999999998876543111 1111111111 13344
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-----CCeEE
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (630)
..--.++...+||..+-+.+.++. ..+.=.+++ .+|..|+.+.....++++|..+.+..+.+.... ..+.-
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~--y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE 179 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFP--YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE 179 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred EEEecCCeEEEEccccceEEEEEe--cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence 444567889999999988887764 334556666 467788888778889999998888777765432 24555
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceeeEeec------------C---CCCeEEEEEeeCCcEEEEEe
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------H---PGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~------------h---~~~v~~l~~sp~~~~l~~~~ 218 (630)
+.|. +|...|=.- ..|...|..+|++...+.- + ..-.+.|+|.|....|+++|
T Consensus 180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6665 565444433 7888899999988765520 1 23478999999888887777
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.022 Score=57.60 Aligned_cols=137 Identities=16% Similarity=0.319 Sum_probs=93.3
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-------EEEEeCCCcEEEEeCCCC-c-eeEEeecC--
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-------IYSAGADGMVCEIDPLTG-S-LLGKFRAS-- 158 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-------l~s~~~dg~v~iwd~~~~-~-~~~~~~~~-- 158 (630)
..+.....++-.|+..|+.+-.... |.. |+-+.+.|+++. -+.|-.|..|.-||.+-. . .+..-+.|
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 3344455688899999998866643 333 777777776542 234556778999998732 2 12222222
Q ss_pred --CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 159 --TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 159 --~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.....|.+-..+| ++++|+ |.|++||--..+....+++...+|..|..+.+|+++++++ +.++-+.++.-
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~ 501 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI 501 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence 2356677777777 566666 9999999733334445788899999999999999999886 77888877643
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.24 Score=49.87 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=79.5
Q ss_pred CcEEEEEeC--C----CeEEEEEccCCeeeEEccCC--CCCCEEEEEEecCCCEEEEEeC--------------------
Q 006808 86 SSLLVLGTG--G----GDVLALAVSAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGA-------------------- 137 (630)
Q Consensus 86 ~~~l~~~~~--~----g~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~-------------------- 137 (630)
+.+++++-+ + |-+.++|-.+-+...+.... ....-.++-|.|..+.++|...
T Consensus 141 G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y 220 (461)
T PF05694_consen 141 GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY 220 (461)
T ss_dssp --EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence 445555433 2 33778887776666554332 2334567888888888887642
Q ss_pred CCcEEEEeCCCCceeEEeecCCC--CeEEEEEc--cCCCEEEEeC---CeEEEEEC-CCCc----eeeEeecC-------
Q 006808 138 DGMVCEIDPLTGSLLGKFRASTK--GISCMAVS--SDGKMLATAA---GQLKTFNC-SDHK----KMQKFSGH------- 198 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~--~v~~l~~~--p~~~~l~~~~---g~i~lwd~-~~~~----~~~~~~~h------- 198 (630)
..++.+||+.+.+.++++..... ....+.|. |+..+=++++ ++|..|-- ..++ .+-.+...
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 25899999999999999886543 34566664 4455444443 56655543 3332 12122110
Q ss_pred ----------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 199 ----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 199 ----------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
..-|+.|.+|.|.++|.+++-..|.|+.||+......
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 3457899999999999999988999999999886543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=66.03 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=73.6
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEE-EEEEecCCCEEEEEeCCCcEEEE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEI 144 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~-~~~~s~~g~~l~s~~~dg~v~iw 144 (630)
..+..+.|+|. -.+||.++.+|.|.++.+. .+.++++.. |...++ +++|.|||+.|+.|-.||+|++.
T Consensus 21 ~~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 21 INIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred cceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 34556778876 6789999999999999888 666667752 555666 99999999999999999999999
Q ss_pred eCCCCceeEEeec-CCCCeEEEEEcc
Q 006808 145 DPLTGSLLGKFRA-STKGISCMAVSS 169 (630)
Q Consensus 145 d~~~~~~~~~~~~-~~~~v~~l~~~p 169 (630)
|+.++..+..+.. ...+|.++-|.|
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999987776322 344777777764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0077 Score=60.71 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=97.5
Q ss_pred CCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC
Q 006808 16 ALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (630)
Q Consensus 16 dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (630)
+.++|+ ++.....++=.|+..|+.+.+++-+.. ++...+.|+..-..+. ...-++|-.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~--------------------~e~TlvGLs 402 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLT--------------------SEQTLVGLS 402 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccc--------------------ccccEEeec
Confidence 444444 555556778889999999999886655 4444444441111100 222367888
Q ss_pred CCeEEEEEccCCee-eEEccCCCC----CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eEEeecCCCCeEEEEEc
Q 006808 95 GGDVLALAVSAGQL-KWRLSDCHP----GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFRASTKGISCMAVS 168 (630)
Q Consensus 95 ~g~v~iwd~~~~~~-~~~~~~~h~----~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~~ 168 (630)
+..|+-||++-... ......+|. ....|++-..+| +|++||.+|.|++||- .+.. ...+.+...+|..+..+
T Consensus 403 ~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred CCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEee
Confidence 88999999974322 112222332 235566665555 7999999999999996 4443 34478888899999999
Q ss_pred cCCCEEEEeC-CeEEEEEC
Q 006808 169 SDGKMLATAA-GQLKTFNC 186 (630)
Q Consensus 169 p~~~~l~~~~-g~i~lwd~ 186 (630)
.+|++|++.+ ..+.+.++
T Consensus 481 adGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 481 ADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccCcEEEEecccEEEEEEE
Confidence 9999998877 66666664
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.019 Score=53.47 Aligned_cols=125 Identities=18% Similarity=0.342 Sum_probs=84.2
Q ss_pred cEEEEEeCCCe-EEEEEccCCeeeEEcc-------CCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC-cee
Q 006808 87 SLLVLGTGGGD-VLALAVSAGQLKWRLS-------DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTG-SLL 152 (630)
Q Consensus 87 ~~l~~~~~~g~-v~iwd~~~~~~~~~~~-------~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~-~~~ 152 (630)
.-++.+-.-|+ ..++|+...+.+..+. .+|. .|||||.+|+..-.| |.|-+||.+.+ +.+
T Consensus 81 ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv 154 (366)
T COG3490 81 RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV 154 (366)
T ss_pred ceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccccccee
Confidence 34566666676 5788888776554332 2343 699999999876433 68999998754 566
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeCCeEEE--------------------EECCCCceeeE--ee--cCCCCeEEEEEe
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAAGQLKT--------------------FNCSDHKKMQK--FS--GHPGAVRFMTFS 208 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~l--------------------wd~~~~~~~~~--~~--~h~~~v~~l~~s 208 (630)
..|..|.-....+.|.+||+.++.+.|-|.. .|..+|..+.+ ++ .+...|..+...
T Consensus 155 gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g 234 (366)
T COG3490 155 GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG 234 (366)
T ss_pred cccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence 7788888788899999999999998754433 34344444332 22 234457778888
Q ss_pred eCCcEEEEE
Q 006808 209 DNGKYVLSS 217 (630)
Q Consensus 209 p~~~~l~~~ 217 (630)
+||..++.+
T Consensus 235 ~dgtvwfgc 243 (366)
T COG3490 235 RDGTVWFGC 243 (366)
T ss_pred CCCcEEEEE
Confidence 887765443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.3 Score=47.63 Aligned_cols=140 Identities=17% Similarity=0.207 Sum_probs=89.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe----------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF---------- 155 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~---------- 155 (630)
++.|++|+.+| +.+++........... +...|..+...|+-+.+++-+ |+.+.++++.........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 77899999999 9999984333322332 334599999999877766664 599999998754433310
Q ss_pred ----ecCCCCeEEEE---EccCCCEEEEeC-CeEEEEECCCC-----ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 156 ----RASTKGISCMA---VSSDGKMLATAA-GQLKTFNCSDH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 156 ----~~~~~~v~~l~---~~p~~~~l~~~~-g~i~lwd~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
......+...+ -...+..|+++. ..|.+|..... +..+.+. -...+..++|. +..++.+. .+
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~--~~ 157 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT--SK 157 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe--CC
Confidence 01122444444 122345566655 78888776543 3455555 34678899998 45566664 44
Q ss_pred eEEEEEcCCCcc
Q 006808 223 YIALWRTDGVKK 234 (630)
Q Consensus 223 ~i~vwd~~~~~~ 234 (630)
...+.|+.++..
T Consensus 158 ~f~~idl~~~~~ 169 (275)
T PF00780_consen 158 GFYLIDLNTGSP 169 (275)
T ss_pred ceEEEecCCCCc
Confidence 578899987654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.4 Score=48.70 Aligned_cols=163 Identities=12% Similarity=0.168 Sum_probs=89.7
Q ss_pred EEEEEccCCeeeE-Ecc---CCCCCCEEEEEEecCCCEEEEE--eCCC---cEEEEeCCCCceeEEeecC-CC---CeEE
Q 006808 98 VLALAVSAGQLKW-RLS---DCHPGGVSAISFATHGSCIYSA--GADG---MVCEIDPLTGSLLGKFRAS-TK---GISC 164 (630)
Q Consensus 98 v~iwd~~~~~~~~-~~~---~~h~~~v~~~~~s~~g~~l~s~--~~dg---~v~iwd~~~~~~~~~~~~~-~~---~v~~ 164 (630)
+.|+++.+++... ... ..-...+..+.|.+++..|+.. ..+. .+.++|..++.+...+... .. ....
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 5667777776531 111 1234468899999999844443 3332 5677788777654333321 11 2235
Q ss_pred EEEc-cCCCEEEEeC-----CeEEEEECCCCceeeEeecCCCCeEE-EEEeeCCcEEEEEeeCC----CeEEEEEcC-CC
Q 006808 165 MAVS-SDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGE----RYIALWRTD-GV 232 (630)
Q Consensus 165 l~~~-p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h~~~v~~-l~~sp~~~~l~~~~~~d----~~i~vwd~~-~~ 232 (630)
..|. +++..++..+ ..|++++...+. ...+....-.|.. +.|+++++.++..+..+ +.|..-++. .+
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 5554 7666665554 488888987765 3455555666755 67888888776655432 356555666 44
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
... |+ +...... ....|+ |++++++-.+.
T Consensus 319 ~~~---~L-T~~~~~~--~~~~~S-----pdg~y~v~~~s 347 (353)
T PF00930_consen 319 EPK---CL-TCEDGDH--YSASFS-----PDGKYYVDTYS 347 (353)
T ss_dssp EEE---ES-STTSSTT--EEEEE------TTSSEEEEEEE
T ss_pred CeE---ec-cCCCCCc--eEEEEC-----CCCCEEEEEEc
Confidence 322 21 1111111 344555 89888776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0024 Score=65.57 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=76.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE-EEEEccCCCEEEEeC--CeEEEEECCCCceeeE
Q 006808 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~ 194 (630)
..|.-+.|+|.-..||.+..+|.|.+..+. .+.+.++..+...++ +++|.|||+.||+|- |+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999998999999999999999987 888888887777777 999999999999997 9999999999987766
Q ss_pred ee-cCCCCeEEEEEee
Q 006808 195 FS-GHPGAVRFMTFSD 209 (630)
Q Consensus 195 ~~-~h~~~v~~l~~sp 209 (630)
+. ....+|.++.|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 32 2455788888864
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.28 Score=46.50 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=89.5
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
++.++|.+.. +.++++....+.|..++.. |+.+.++...-.+..-+|++..++.++++.-.++.+.++++.
T Consensus 24 ~SGLTy~pd~--------~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 24 LSGLTYNPDT--------GTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ccccEEcCCC--------CeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 5677777764 5677778888889888874 677666543334678899998877766666668999999884
Q ss_pred CCc------eeEEee-----cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC---Cceee--Ee------ecCCCCeE
Q 006808 148 TGS------LLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQ--KF------SGHPGAVR 203 (630)
Q Consensus 148 ~~~------~~~~~~-----~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~---~~~~~--~~------~~h~~~v~ 203 (630)
... ....+. .+...+-.++|+|.+..|+++- .-..+|.+.. ...+. .. ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112222 2344689999999877776665 3334444332 11111 11 12334678
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+++++|....|+.-+...+.|..+| ..++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~ 203 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGR 203 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCC
Confidence 9999998766666665788899998 4444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.17 Score=47.47 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=102.4
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------------------CcEE
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------------GMVC 142 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------------------g~v~ 142 (630)
+.+|+..-.| |.|-|||...+-...--+..|.-....+.|.+||+.++.+... -.+.
T Consensus 125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred CcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEE
Confidence 5555544332 4589999986543323334677778899999999998876320 1233
Q ss_pred EEeCCCCceeEEee----cCCCCeEEEEEccCCCEEEEeC--Ce-----EEEEECCCCceeeEee-------cCCCCeEE
Q 006808 143 EIDPLTGSLLGKFR----ASTKGISCMAVSSDGKMLATAA--GQ-----LKTFNCSDHKKMQKFS-------GHPGAVRF 204 (630)
Q Consensus 143 iwd~~~~~~~~~~~----~~~~~v~~l~~~p~~~~l~~~~--g~-----i~lwd~~~~~~~~~~~-------~h~~~v~~ 204 (630)
+.|..+|+.+.+.. .+.-.|..++..+||+.++.+- |. -.+=-...++.+.-+. .....|-+
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs 284 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS 284 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Confidence 44444555444322 2334688888889887766553 21 1111112333333332 12345777
Q ss_pred EEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 205 l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
|+.+.+...++.++-..+...+||..++... ... ....+.-.. +...-+++.+.+|.+.++.
T Consensus 285 iA~n~~~glV~lTSP~GN~~vi~da~tG~vv------~~a---~l~daaGva-----~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 285 IAANRRDGLVALTSPRGNRAVIWDAATGAVV------SEA---ALPDAAGVA-----AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eeecccCCeEEEecCCCCeEEEEEcCCCcEE------ecc---cccccccce-----eccCceEEecCCceEEecc
Confidence 8887666666666645667899999998743 111 111111111 3344456666778888774
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.31 Score=47.85 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=84.6
Q ss_pred CCEEEEEEecCCCEEEEEeC-----------CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEE
Q 006808 118 GGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT 183 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~l 183 (630)
...+.+...|+|.+-++... -|.++.+|. .+..++.+..+-..-+.|+|+||++.+..+. +.|+-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34677888899876544322 133444443 4666655555455567899999999888876 68887
Q ss_pred EECCC--Cce-----eeEeecCCCCeEEEEEeeCCcEEEEEeeCCC-eEEEEEcCCCccccceeeeeecCCceeeeeEEe
Q 006808 184 FNCSD--HKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 184 wd~~~--~~~-----~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (630)
|++.. +.. ...+..+.+..-.++...+|.+.+++. .++ .|.+|+.. +++. ....-+.....+.+|
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~F 262 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVRFNPD-GKLL-----GEIKLPVKRPTNPAF 262 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEEECCC-CcEE-----EEEECCCCCCccceE
Confidence 77652 211 122233445566777888888775443 343 89999988 5533 223333344455555
Q ss_pred cCCccCCCCCEEEEEec
Q 006808 256 DNGGVDDAGLYVLAISE 272 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s~ 272 (630)
. -|+.+.|.+.+.
T Consensus 263 g----G~~~~~L~iTs~ 275 (307)
T COG3386 263 G----GPDLNTLYITSA 275 (307)
T ss_pred e----CCCcCEEEEEec
Confidence 4 144455544443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.31 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 199 ~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+++..++.||+|++++.-. .+|.+.+.+..-.+
T Consensus 216 ~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSE 249 (410)
T ss_pred CCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccc
Confidence 46899999999999998887 58898888765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.68 Score=48.31 Aligned_cols=188 Identities=13% Similarity=0.121 Sum_probs=101.9
Q ss_pred CcEEEEE-eCCCe----EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-----------CcEEEEeCCCC
Q 006808 86 SSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----------GMVCEIDPLTG 149 (630)
Q Consensus 86 ~~~l~~~-~~~g~----v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----------g~v~iwd~~~~ 149 (630)
+++++.+ +.+|. ++++|+.+|+.+...... .....+.|.++++.|+....+ ..|+.|.+.+.
T Consensus 135 g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 135 GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 5556554 45555 999999999876543321 112349999998887665432 24788888776
Q ss_pred cee--EEeecCCCC--eEEEEEccCCCEEEEeC------CeEEEEECCCC----ceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 150 SLL--GKFRASTKG--ISCMAVSSDGKMLATAA------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 150 ~~~--~~~~~~~~~--v~~l~~~p~~~~l~~~~------g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
..- ..|...... ...+..++++++++... ..+++.++..+ .....+......+....-+..+.+++
T Consensus 213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi 292 (414)
T PF02897_consen 213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYI 292 (414)
T ss_dssp GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEE
T ss_pred hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEE
Confidence 432 445544443 56888999999988654 25888898875 23333333333443333333444444
Q ss_pred EEee--CCCeEEEEEcCCCccccceeeeeecCCc-eeeeeEEecCCccCCCCCEEEEEecCC--cEEEEEcC
Q 006808 216 SSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQ 282 (630)
Q Consensus 216 ~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~ 282 (630)
.+.. ..+.|...++.......... ....+.. ..+..+... .+.+++....++ .|++|++.
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~-~l~~~~~~~~l~~~~~~------~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSPAEWWT-VLIPEDEDVSLEDVSLF------KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSGGGEEE-EEE--SSSEEEEEEEEE------TTEEEEEEEETTEEEEEEEETT
T ss_pred eeCCCCCCcEEEEeccccccccccee-EEcCCCCceeEEEEEEE------CCEEEEEEEECCccEEEEEECC
Confidence 4321 13466667777665321111 2233332 233333321 234455555555 68888887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0047 Score=57.79 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=81.4
Q ss_pred ccccCChhHHHHHHhccC------hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhcccccCCCC---hhHHHHHH
Q 006808 485 FETNIPVKKMRATILSLS------PTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQES---LTPMLSSL 555 (630)
Q Consensus 485 ~~~~~~~~~i~~tv~~l~------~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~~~~~---l~~~l~~L 555 (630)
.+..+.+..|..-|++|. ...+..+|+++..++.++ +..+.++.|+...|++||..|...++ ++..|..|
T Consensus 132 ~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~-~dfElvQa~l~vFLk~Hgd~i~~~~~~~~L~~~l~~l 210 (237)
T PF04192_consen 132 YLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSR-RDFELVQAYLSVFLKVHGDVIMESEEEEELREALEEL 210 (237)
T ss_pred HHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 566778889999999999 577888999999888744 68999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhhHhHHhc-cchHHHH
Q 006808 556 YKITVSREAAFQSLLRL-SGRLQLT 579 (630)
Q Consensus 556 ~~~~~~~~~~~~~l~~l-~g~l~~~ 579 (630)
....++...++..|++. .|.+.++
T Consensus 211 ~~~q~~~w~~L~~l~~~~~cvv~fl 235 (237)
T PF04192_consen 211 REAQESEWKRLDDLFQYCSCVVSFL 235 (237)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 99999999999988854 4455554
|
This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.32 Score=54.06 Aligned_cols=197 Identities=16% Similarity=0.199 Sum_probs=116.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCC-------CEEEEEEec----------------CCCEEEEEeCCCcEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-------GVSAISFAT----------------HGSCIYSAGADGMVC 142 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~-------~v~~~~~s~----------------~g~~l~s~~~dg~v~ 142 (630)
+..+++++.++.|.-.|..+|+.++++...... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 678899999999999999999998887532111 123344421 234788888999999
Q ss_pred EEeCCCCceeEEeecCCCCe-------------EEEEEcc--CCCEEEEe------------CCeEEEEECCCCceeeEe
Q 006808 143 EIDPLTGSLLGKFRASTKGI-------------SCMAVSS--DGKMLATA------------AGQLKTFNCSDHKKMQKF 195 (630)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v-------------~~l~~~p--~~~~l~~~------------~g~i~lwd~~~~~~~~~~ 195 (630)
-.|..+|+.+..|... +.| ..+.-.| .+..++++ +|.|+-+|..+|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988776421 111 1112222 12344444 267999999999987766
Q ss_pred ecC----C-----C--------Ce-EEEEEeeCCcEEEEEe-----------------eCCCeEEEEEcCCCccccceee
Q 006808 196 SGH----P-----G--------AV-RFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 196 ~~h----~-----~--------~v-~~l~~sp~~~~l~~~~-----------------~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
..- . + .+ ...++.|....++... ...+.|.-.|..+++.. ..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~---W~ 429 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER---WV 429 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE---EE
Confidence 310 0 0 01 1233444333332211 01235666777777644 33
Q ss_pred eeecCCc-ee------eeeEEecCCccCCCCC---EEEEEecCCcEEEEEcCCccccccc
Q 006808 241 LAMEHPA-VF------MDCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 241 ~~~~~~~-~~------~~~~~~~~~~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
+...|+. .. .....+. ..+|+ .++.++.+|.++++|-.+|+.+...
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLP----DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ecccCCccccccccCCceEEeee----cCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 3332221 10 1111111 02453 7889999999999999999887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0034 Score=39.32 Aligned_cols=39 Identities=33% Similarity=0.693 Sum_probs=32.8
Q ss_pred CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
+++...+..|...|.++.|++.+.++++++ .|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence 345667778899999999999998888887 699999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.19 Score=54.20 Aligned_cols=182 Identities=15% Similarity=0.121 Sum_probs=92.2
Q ss_pred CcEEEEEeCC-C-----eEEEEEccCCeeeEEccCCCCCCEEEEEEe-cCCCEEEEEeCCC-----cEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGG-G-----DVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADG-----MVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~-g-----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg-----~v~iwd~~~~~~~~ 153 (630)
+.+.++|+.+ | ++..||+.+++... .. .-..+-..+... -+|...++||.|| +|-.||..+.+--
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a-~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~- 409 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VA-PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT- 409 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceec-cC-CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccc-
Confidence 5667778777 3 38889998887432 11 111111111111 2677788888886 4777776654311
Q ss_pred EeecCCCCeEEEEE-ccCCCEEEEeC--------CeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 154 KFRASTKGISCMAV-SSDGKMLATAA--------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 154 ~~~~~~~~v~~l~~-~p~~~~l~~~~--------g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
.............. .-+|.+.++|+ .++..||..+++-. ..+....... .++ .-++...+.+| .|+
T Consensus 410 ~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG-~~~ 486 (571)
T KOG4441|consen 410 PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGG-FDG 486 (571)
T ss_pred ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECC-ccC
Confidence 11111112222222 22677777776 36888998876532 2221111111 122 23455566666 354
Q ss_pred -----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCC
Q 006808 223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQN 283 (630)
Q Consensus 223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~ 283 (630)
++..||..+.+-. .+-.+........+... ++...++|+.|| +|..||..+
T Consensus 487 ~~~~~~VE~ydp~~~~W~---~v~~m~~~rs~~g~~~~-------~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQWT---MVAPMTSPRSAVGVVVL-------GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred CCccceEEEEcCCCCcee---EcccCccccccccEEEE-------CCEEEEEecccCccccceeEEcCCCC
Confidence 3777888776532 22222233333333333 466777777766 344555433
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.44 Score=51.05 Aligned_cols=199 Identities=12% Similarity=0.166 Sum_probs=114.0
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..++.++.++.|.-.|..+|+.+..+.............. ...... ... .+..+++++.++
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~----~~~~rg--~av------------~~~~v~v~t~dg 130 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCC----DVVNRG--VAL------------YDGKVFFGTLDA 130 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccc----cccccc--ceE------------ECCEEEEEcCCC
Confidence 45666777788999999999999887653211000000000 000000 000 045688899999
Q ss_pred eEEEEEccCCeeeEEccCCCCC---CEEEEEEecCCCEEEEEe------CCCcEEEEeCCCCceeEEeecCCC-------
Q 006808 97 DVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTK------- 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~------- 160 (630)
.|.-+|..+|+.+++....... .+++--.-.++ .++.+. .+|.|..+|..+|+.+-.+..-..
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence 9999999999998776432111 12211111134 455543 268999999999988766443111
Q ss_pred ------------------------Ce-EEEEEccCCCEEEEeC------------------CeEEEEECCCCceeeEeec
Q 006808 161 ------------------------GI-SCMAVSSDGKMLATAA------------------GQLKTFNCSDHKKMQKFSG 197 (630)
Q Consensus 161 ------------------------~v-~~l~~~p~~~~l~~~~------------------g~i~lwd~~~~~~~~~~~~ 197 (630)
.+ ..+++.|...++..+. .+|.-.|+++|+..-.|+.
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence 11 1235666555555443 1577788999988776653
Q ss_pred CCCC---------eEEEEEeeCCc--EEEEEeeCCCeEEEEEcCCCcc
Q 006808 198 HPGA---------VRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 198 h~~~---------v~~l~~sp~~~--~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.... ..-+.+..+|+ -++..+..+|.+++.|-.+++.
T Consensus 290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2211 11222334665 3444444799999999998875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.66 Score=48.02 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=50.2
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-CCC
Q 006808 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGA 201 (630)
Q Consensus 125 ~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-~~~ 201 (630)
++.+....+....++.+.+.+-...+. +. ..+++..+++||+|+++|.-. |.+.+.+..-.+.+..+... ...
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 444444445545555565444322211 12 245899999999999998766 88888876655566555433 345
Q ss_pred eEEEEEeeCC
Q 006808 202 VRFMTFSDNG 211 (630)
Q Consensus 202 v~~l~~sp~~ 211 (630)
...+.|.-+.
T Consensus 262 p~~~~WCG~d 271 (410)
T PF04841_consen 262 PKQMAWCGND 271 (410)
T ss_pred CcEEEEECCC
Confidence 5667776443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.13 Score=41.18 Aligned_cols=99 Identities=14% Similarity=0.280 Sum_probs=61.5
Q ss_pred EEEEEEec---CC-CEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeE
Q 006808 120 VSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 120 v~~~~~s~---~g-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~ 194 (630)
|+++++.. +| +.|++|+.|..|++|+ ....+..+.. ...|.+++-...+++.+.-. |+|-+|+-.. .+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeee
Confidence 56777655 33 4599999999999998 3466667764 45678888777655444433 9999998522 2333
Q ss_pred eecCCCCeEEEEEee---CCc-EEEEEeeCCCeEE
Q 006808 195 FSGHPGAVRFMTFSD---NGK-YVLSSAVGERYIA 225 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp---~~~-~l~~~~~~d~~i~ 225 (630)
.+.. ..++++.+.. +|. -|+++- .+|.|-
T Consensus 77 iKSK-~~~~~~~~~D~~gdG~~eLI~Gw-snGkve 109 (111)
T PF14783_consen 77 IKSK-NQVTSMAFYDINGDGVPELIVGW-SNGKVE 109 (111)
T ss_pred eccC-CCeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence 3322 2355555443 232 466655 477664
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.86 Score=50.77 Aligned_cols=206 Identities=15% Similarity=0.211 Sum_probs=116.1
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEE-eccccccc------ccccCCcEE
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMK-WLSVDRKK------KRKLGSSLL 89 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-w~~~~~~~------~~~~~~~~l 89 (630)
+..+..|+.++.|.-.|..+|+.+..+.......... .+. .+.-+. |..+.... .-......|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~--------~~~--~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR--------QHQ--TCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc--------ccc--cccceEEecCCcccccccccccccccCCEE
Confidence 4567778888999999999999998876432211000 000 000011 11100000 000115578
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEE-------------EEEEec--CCCEEEEEeC----------CCcEEEE
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-------------AISFAT--HGSCIYSAGA----------DGMVCEI 144 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~-------------~~~~s~--~g~~l~s~~~----------dg~v~iw 144 (630)
++++.|+.+.-.|..+|+.+..+- ..+.|. .+.-.| .+..++.|+. +|.|+-+
T Consensus 264 ~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 264 ILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 999999999999999999987663 222210 111112 2345666642 6889999
Q ss_pred eCCCCceeEEeecC---------CC--------Ce-EEEEEccCCCEEEEeC--------------------CeEEEEEC
Q 006808 145 DPLTGSLLGKFRAS---------TK--------GI-SCMAVSSDGKMLATAA--------------------GQLKTFNC 186 (630)
Q Consensus 145 d~~~~~~~~~~~~~---------~~--------~v-~~l~~~p~~~~l~~~~--------------------g~i~lwd~ 186 (630)
|..+|+.+-.+... .+ .+ ..+++.|...+++.+. +.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 99999988776521 00 01 2234444433333311 35677788
Q ss_pred CCCceeeEeec-CC--------CCeEEEEEee-CCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 187 SDHKKMQKFSG-HP--------GAVRFMTFSD-NGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 187 ~~~~~~~~~~~-h~--------~~v~~l~~sp-~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
++|+..-.++. |. ....-+.+.. +|+ .++.++ .+|.++++|-++++..
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEE
Confidence 88987766643 21 1111122322 553 455555 7999999999998754
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.23 Score=53.77 Aligned_cols=182 Identities=8% Similarity=0.052 Sum_probs=88.2
Q ss_pred CcEEEEEeCC------CeEEEEEccCCeeeEEccCCC--CCCEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCc--
Q 006808 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGS-- 150 (630)
Q Consensus 86 ~~~l~~~~~~------g~v~iwd~~~~~~~~~~~~~h--~~~v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~~~-- 150 (630)
+.+.++|+.+ ..+..||+.++... ....-. ......+ .-+|+..+.||.++ .+..||..+.+
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 5556666643 23788998887542 111101 1111222 22576777777654 47889977543
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC--C-----------------------eEEEEECCCCce--eeEeecCCCCeE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA--G-----------------------QLKTFNCSDHKK--MQKFSGHPGAVR 203 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g-----------------------~i~lwd~~~~~~--~~~~~~h~~~v~ 203 (630)
.+..+.........+ .-+|.+.+.|+ + .+..||..+.+- +..+. .....
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~ 456 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIR 456 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC--ccccc
Confidence 111112111111122 22577777765 1 366788776542 22221 11111
Q ss_pred EEEEeeCCcEEEEEeeCC-----CeEEEEEcCC-CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC--c
Q 006808 204 FMTFSDNGKYVLSSAVGE-----RYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--V 275 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d-----~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg--~ 275 (630)
.-...-+++..+.||..+ ..+..||..+ .+- .....+..+......+.+ +|...++|+.+| .
T Consensus 457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W---~~~~~m~~~r~~~~~~~~-------~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW---ELITTTESRLSALHTILH-------DNTIMMLHCYESYML 526 (557)
T ss_pred CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCe---eEccccCcccccceeEEE-------CCEEEEEeeecceee
Confidence 112223466656665321 2467788887 442 122333333333333333 577788888887 4
Q ss_pred EEEEEcCCc
Q 006808 276 CYIWYGQNI 284 (630)
Q Consensus 276 i~iwd~~~~ 284 (630)
+..||..+.
T Consensus 527 ~e~yd~~~~ 535 (557)
T PHA02713 527 QDTFNVYTY 535 (557)
T ss_pred hhhcCcccc
Confidence 555555443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0072 Score=37.71 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=28.8
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
.|...|.++.|++.+..+++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.15 Score=55.06 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCEEEEEEecCCCEEEEEe------CCC--cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C---------
Q 006808 118 GGVSAISFATHGSCIYSAG------ADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------- 179 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g--------- 179 (630)
..+.+.+++|+|+.++... .|. .+.+++. .+.. ..+.. ....+.-.|+|+|..+++.. +
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678999999999876554 243 4555564 2333 33322 22478889999988777664 2
Q ss_pred ----eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 180 ----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 180 ----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.+++.++..+.... ...+.|..+.|||||..++... ++.|++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 23333333332221 2346799999999999998876 567777
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.98 Score=42.72 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=90.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEeecCCC-CeEEEEEccCCCEEEEeC-CeEEEEECCCCcee
Q 006808 117 PGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM 192 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~ 192 (630)
..-..++.|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++...+.-+.++=- +...+||..+.+.+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEE
Confidence 34467888877888778887666 799999999988766553332 223445543322222222 89999999999998
Q ss_pred eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 193 ~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
.++.- .+.=..++ .++..|+.+. +...|+++|..+.+......+...+.+-..+.=+-+ -+|...|=.=.
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~------i~G~IyANVW~ 193 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY------INGKIYANVWQ 193 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE------ETTEEEEEETT
T ss_pred EEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEE------EcCEEEEEeCC
Confidence 88863 34445666 5677777765 467899999877654311111111111111111222 13444444444
Q ss_pred CCcEEEEEcCCccccc
Q 006808 273 TGVCYIWYGQNIEELR 288 (630)
Q Consensus 273 dg~i~iwd~~~~~~~~ 288 (630)
...|...|..+|+...
T Consensus 194 td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVG 209 (264)
T ss_dssp SSEEEEEETTT-BEEE
T ss_pred CCeEEEEeCCCCeEEE
Confidence 5566666777776543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.1 Score=45.34 Aligned_cols=193 Identities=12% Similarity=0.078 Sum_probs=92.2
Q ss_pred CcEEEE-EeCCCeEEEEEccCC----eeeEEccC--CCC----CCEEEEEEecCCCEEEEEe--C----CCcEEEEeCCC
Q 006808 86 SSLLVL-GTGGGDVLALAVSAG----QLKWRLSD--CHP----GGVSAISFATHGSCIYSAG--A----DGMVCEIDPLT 148 (630)
Q Consensus 86 ~~~l~~-~~~~g~v~iwd~~~~----~~~~~~~~--~h~----~~v~~~~~s~~g~~l~s~~--~----dg~v~iwd~~~ 148 (630)
.++|++ |-.++.|+|+|+.+. +..+.+.. -+. +....+..-|+|+.++++= . -|-+.+.|-.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 344555 447788999999853 22222210 010 1223344457888888752 2 24688889888
Q ss_pred CceeEEeecCCC---CeEEEEEccCCCEEEEeC----------------------CeEEEEECCCCceeeEeecCC--CC
Q 006808 149 GSLLGKFRASTK---GISCMAVSSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHP--GA 201 (630)
Q Consensus 149 ~~~~~~~~~~~~---~v~~l~~~p~~~~l~~~~----------------------g~i~lwd~~~~~~~~~~~~h~--~~ 201 (630)
.+....+..... .-+.+-|.|..+.+++.. .++++||+.+.+.++++.-.. ..
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 888877765332 346677889888888863 379999999999999886332 23
Q ss_pred eEEEEEe--eCCcEEEEEeeCCCeEEEEEc-CCCccccceeeeeecCC-----------------ceeeeeEEecCCccC
Q 006808 202 VRFMTFS--DNGKYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----------------AVFMDCRCIDNGGVD 261 (630)
Q Consensus 202 v~~l~~s--p~~~~l~~~~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 261 (630)
..-|.|. |+..+=++++.-..+|..|-- ..+.-. ...+..+... ...++-+..+
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS----- 320 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS----- 320 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence 4566775 444444443334555655544 333211 1122222211 1223333344
Q ss_pred CCCCEEEEEec-CCcEEEEEcCCc
Q 006808 262 DAGLYVLAISE-TGVCYIWYGQNI 284 (630)
Q Consensus 262 ~~~~~l~s~s~-dg~i~iwd~~~~ 284 (630)
.|.++|...+. +|.|+.||+...
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCEEEEEcccCCcEEEEecCCC
Confidence 78888877765 999999998653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.021 Score=38.08 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=28.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (630)
.++| -+++|+|..+++|.|+.+|.|.||.+ +++.
T Consensus 11 ~~~v--~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRV--SCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcE--EEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3567 46699999999999999999999998 5554
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.34 Score=51.93 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=70.9
Q ss_pred EEEEeCCC-eEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEEeCCCcEEEEeCC---------CCceeEEe-
Q 006808 89 LVLGTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPL---------TGSLLGKF- 155 (630)
Q Consensus 89 l~~~~~~g-~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~v~iwd~~---------~~~~~~~~- 155 (630)
+++...++ .+.|||...+.....-.....+.|.++.|. |+|+.+++.|..+.|.++.-. +..+++.+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 44445444 499999998876444332457889999995 588999999999999998542 12233332
Q ss_pred -ecCC-CCeEEEEEccCCCEEEEeCCeEEEEEC
Q 006808 156 -RAST-KGISCMAVSSDGKMLATAAGQLKTFNC 186 (630)
Q Consensus 156 -~~~~-~~v~~l~~~p~~~~l~~~~g~i~lwd~ 186 (630)
..+. .+|....|.++|.+++.+++.+.|+|-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 3333 588999999999888888899999974
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.28 Score=44.58 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=62.8
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEE--ccCCee-----eEEccCC---CCCCEEEEEEecCCCEEEEEeCCC
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA--VSAGQL-----KWRLSDC---HPGGVSAISFATHGSCIYSAGADG 139 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd--~~~~~~-----~~~~~~~---h~~~v~~~~~s~~g~~l~s~~~dg 139 (630)
.++|.... ..+.++-+.+-.|.-|| ..+|.. +..+.+. ..--.-.++...+|++.+++-..+
T Consensus 162 gl~Wd~d~--------K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 162 GLAWDSDA--------KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG 233 (310)
T ss_pred cccccccC--------cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence 46777443 44566677777887777 556543 2222110 111223455566788888888888
Q ss_pred cEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
+|...|..+|+.+.+++-....|+|++|--
T Consensus 234 ~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 999999999999999998888999999953
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.71 Score=50.03 Aligned_cols=142 Identities=8% Similarity=0.038 Sum_probs=68.2
Q ss_pred CcEEEEEeCCC------eEEEEEccCCeeeEEccCC-CCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~g------~v~iwd~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~~~~ 153 (630)
+.++++|+.++ .+..||+.++......... .......+. -++..++.||.+ ..+..||..+.+-..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 45556665442 4778998887653211101 111122222 256677777755 357778876553211
Q ss_pred --EeecCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 154 --KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 154 --~~~~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
.+...... .+++ .-++++++.|+ +.+..||+.+.+-. ..++...... + +...++..++.||...
T Consensus 373 ~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 373 EPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGISY 448 (534)
T ss_pred CCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCccC
Confidence 11111111 1222 23566666665 35788998765422 1111111111 1 2233555556555311
Q ss_pred -------CeEEEEEcCCCc
Q 006808 222 -------RYIALWRTDGVK 233 (630)
Q Consensus 222 -------~~i~vwd~~~~~ 233 (630)
..+.+||..+.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCCCcccceEEEecCCCCc
Confidence 137888887764
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.88 Score=41.38 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=81.0
Q ss_pred cEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecCCCEEEEEeCC---C---cEEEE-eCCC----CceeE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGAD---G---MVCEI-DPLT----GSLLG 153 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g---~v~iw-d~~~----~~~~~ 153 (630)
..|++++..+.|.+|++.... ...++ ..-+.|..+.++..|++++|-=.+ . .+++| +.+. .++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 567777888899999998433 33344 344789999999999999986322 1 45665 2221 11211
Q ss_pred -Eeec---------------------CCCCeEEEEEcc-CCCEEEEeCCeEEEEECCCCce-ee-----Eee-----cCC
Q 006808 154 -KFRA---------------------STKGISCMAVSS-DGKMLATAAGQLKTFNCSDHKK-MQ-----KFS-----GHP 199 (630)
Q Consensus 154 -~~~~---------------------~~~~v~~l~~~p-~~~~l~~~~g~i~lwd~~~~~~-~~-----~~~-----~h~ 199 (630)
.+-+ ...++.+++..| .|++++.+.+.+.+|.+..... .. .|. -|.
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1111 123567888888 5666666558999998754432 11 111 111
Q ss_pred -CCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 200 -GAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 200 -~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.....++|. +.|++..+ +..++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS--DLEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence 124455554 55776654 666777654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.50 E-value=5.3 Score=44.39 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=65.2
Q ss_pred cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee--cCCCCeEEEEEeeC--CcE
Q 006808 140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDN--GKY 213 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~--~~~ 213 (630)
.|++++-. ..+..|....+ ++....+.+...++.++ +.+....+..+. ++... .....|.|+.++|- ++.
T Consensus 471 ~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred cEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence 36666633 23334443333 33333344444555444 455555655544 22222 23467999999975 333
Q ss_pred ---EEEEeeCCCeEEEEE-cCCCccccceeeeeecC--CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 214 ---VLSSAVGERYIALWR-TDGVKKQSASCVLAMEH--PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 214 ---l~~~~~~d~~i~vwd-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+++.|.++..+.+.- ....... +...... -...+-...+. .|..+|.++..||.+..|.+
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~---~~~~l~~~~iPRSIl~~~~e-----~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILI---THEQLSGEIIPRSILLTTFE-----GDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCccee---eeeccCCCccchheeeEEee-----ccceEEEEEcCCceEEEEEE
Confidence 455555666554443 3332221 2222221 12222233343 46899999999998876643
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.56 Score=50.79 Aligned_cols=141 Identities=9% Similarity=0.086 Sum_probs=71.3
Q ss_pred CcEEEEEeCCC-----eEEEEEccCCeeeEEccCCCC-CCEEEEEEecCCCEEEEEeCCC--------------------
Q 006808 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGADG-------------------- 139 (630)
Q Consensus 86 ~~~l~~~~~~g-----~v~iwd~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg-------------------- 139 (630)
+.+.++|+.++ ++..||+.++.....-.-.+. .....+. -+|...+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccccc
Confidence 56667777654 388999988754311110111 1111222 2576677777542
Q ss_pred ---cEEEEeCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCC-Cc--eeeEeecCCCCeE
Q 006808 140 ---MVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSD-HK--KMQKFSGHPGAVR 203 (630)
Q Consensus 140 ---~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~-~~--~~~~~~~h~~~v~ 203 (630)
.+..||..+.+ .+..+...... .+++ .-++++.+.|+ ..+..||..+ .+ .+..++.......
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 46677776543 22222111111 1122 22566666665 1367899886 33 3333332222222
Q ss_pred EEEEeeCCcEEEEEeeCCC--eEEEEEcCCCc
Q 006808 204 FMTFSDNGKYVLSSAVGER--YIALWRTDGVK 233 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~ 233 (630)
.+.+ +|+..++|| .++ .+..||+.+.+
T Consensus 508 ~~~~--~~~iyv~Gg-~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH--DNTIMMLHC-YESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE--CCEEEEEee-ecceeehhhcCccccc
Confidence 2232 566667776 576 67777777665
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.071 Score=58.66 Aligned_cols=99 Identities=17% Similarity=0.239 Sum_probs=70.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEE
Q 006808 128 HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF 204 (630)
Q Consensus 128 ~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~ 204 (630)
.+..++.|+..|.+-..|+... .+...=....++|++++|+.+|++++.|- |.|.+||...++.++.+..|..+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557888888899988887643 11111122356999999999999998886 89999999999999888877777666
Q ss_pred EEE---eeCCcEEEEEeeCCCeEEEEEc
Q 006808 205 MTF---SDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 205 l~~---sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
+-+ ..++..++++. ..|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D-~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSD-TGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEcc-CCCc--eEEE
Confidence 544 34555555543 3453 5654
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.41 Score=48.54 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=92.9
Q ss_pred EECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
-...|..++. .|+....++-.|+..|+.+.++..+... -+.|.|.+.-.... ...-+
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt--------------------~eqtl 531 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMT--------------------DEQTL 531 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcC--------------------ccceE
Confidence 4455666555 4555667777899999999888866543 22333331100000 22235
Q ss_pred EEeCCCeEEEEEccCCe-eeEEc-cC--CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 91 LGTGGGDVLALAVSAGQ-LKWRL-SD--CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~-~~~~~-~~--~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
+|-.+..|.-.|++-.. .+... .. .......+..-. ...+++.+|..|.|++||--.-+....+.+.+..|..+.
T Consensus 532 vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id 610 (776)
T COG5167 532 VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID 610 (776)
T ss_pred EeecccceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence 66677777777775332 11111 00 011112222222 345899999999999999544444444677777999999
Q ss_pred EccCCCEEEEeC-CeEEEEECC
Q 006808 167 VSSDGKMLATAA-GQLKTFNCS 187 (630)
Q Consensus 167 ~~p~~~~l~~~~-g~i~lwd~~ 187 (630)
.+.+|+++++.+ ..+.+.|++
T Consensus 611 vta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 611 VTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eecCCcEEEEeecceEEEEecc
Confidence 999999988877 788888864
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.17 E-value=2.3 Score=47.07 Aligned_cols=174 Identities=10% Similarity=0.090 Sum_probs=105.0
Q ss_pred EEEEEccCCeeeEEccCCCCC---CEEEEEEecC-CCEEEEEe----------CCCcEEEEeCCCCceeEEeecC--CCC
Q 006808 98 VLALAVSAGQLKWRLSDCHPG---GVSAISFATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS--TKG 161 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~~---~v~~~~~s~~-g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~--~~~ 161 (630)
++++|..+-+........... .|.++.|..| +.+++.|. ..|.|.+|.+..++.++....+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 667776666554332211112 3555668877 55666663 3467777776664333333222 234
Q ss_pred eEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+.++..- +|+++|.-+..|++|++.+.+.++.-..|..++..+...-.|..++++.. -+.+.+...+..+.. ...+.
T Consensus 832 v~aL~~f-ngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-m~Sitll~y~~~eg~-f~evA 908 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL-MRSITLLQYKGDEGN-FEEVA 908 (1096)
T ss_pred eeehhhh-CCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec-cceEEEEEEeccCCc-eEEee
Confidence 4444322 67788877789999999999877777778899999999999999998874 566666555444311 00112
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.--++.+...+-.. ++..++.+..+|.+++-..
T Consensus 909 rD~~p~Wmtaveil-------~~d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 909 RDYNPNWMTAVEIL-------DDDTYLGAENSGNLFTVRK 941 (1096)
T ss_pred hhhCccceeeEEEe-------cCceEEeecccccEEEEEe
Confidence 22234444443333 4556666677788877654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.7 Score=41.34 Aligned_cols=156 Identities=11% Similarity=0.048 Sum_probs=98.3
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
++.+.|+|. .+.|++......-.||=...|+.+.++.-.--...-++.|..+|.+.++--.++.+.++.+.
T Consensus 88 vS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 88 VSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 667777776 45577777777777777778888776654334456678888777777776678888888766
Q ss_pred CCceeEE----------eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-e--eeEeecCC-------CCeEEE
Q 006808 148 TGSLLGK----------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-K--MQKFSGHP-------GAVRFM 205 (630)
Q Consensus 148 ~~~~~~~----------~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~--~~~~~~h~-------~~v~~l 205 (630)
....... ........-.++|.|....|..+- +-+.||.+.... . +.....+. ..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 4422111 111244778999999888777776 544454443221 1 11111121 246778
Q ss_pred EEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 206 TFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 206 ~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.|++....|++-+.+++.+.-.|....
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCCC
Confidence 888766666666656777777776554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.059 Score=48.78 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=71.9
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEE-
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA- 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~- 166 (630)
+..-+.+|.|.-+++...+...+....|...-.- ..-+..+++|+.+|.|.+|...-. .....+......|.++.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 4445566777777665443322221222222111 123557899999999999987622 11111111222333322
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-CCeEEEEEeeCCcEEEEE--eeCCCeEEEEEcCC
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSS--AVGERYIALWRTDG 231 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~~~--~~~d~~i~vwd~~~ 231 (630)
...++.+..++. |.|+.|++.-++.+.....|. .++.....+..++++..+ + .|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcchhh
Confidence 222344555554 899999998888777666666 344333333334444443 3 344555555443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=1.6 Score=47.19 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=67.6
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCCcee--
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLL-- 152 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~~~~-- 152 (630)
+.+.+.|+.+ ..+..||+.++.....-...+...-.+++ .-+++.++.||.+ ..+..||+.+.+-.
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 5566667654 24778998877543111111111111222 2256666666632 35788888764321
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-C---------eEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-G---------QLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-g---------~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
..+...... .++ ...++.+++.|+ . .+.+||..+++-. ..+.........+. -+++.++.+|..
T Consensus 422 ~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK 497 (534)
T ss_pred CCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence 111111111 122 223566666665 1 3788898776422 11111111111222 256666666532
Q ss_pred ----CCeEEEEEcCCCc
Q 006808 221 ----ERYIALWRTDGVK 233 (630)
Q Consensus 221 ----d~~i~vwd~~~~~ 233 (630)
.+.+.+||..+.+
T Consensus 498 ~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 498 YEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceeEEEeCCCCE
Confidence 1357777776654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.093 Score=47.57 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (630)
..-+++|+.+|.|.+|+...-....... .+.......|.-..++.+.++++.||.|+.|++..++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 5568999999999999886322111111 1111222223333356678899999999999998887776666565 3444
Q ss_pred EEEEccCCCEEEEe--C--CeEEEEECC
Q 006808 164 CMAVSSDGKMLATA--A--GQLKTFNCS 187 (630)
Q Consensus 164 ~l~~~p~~~~l~~~--~--g~i~lwd~~ 187 (630)
.+..+..+.+++.+ + ..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 44444444454444 2 355555554
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.029 Score=60.23 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=76.8
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEE-----------EecCCCEEEEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS-----------FATHGSCIYSA 135 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~-----------~s~~g~~l~s~ 135 (630)
...-+.|++.-.. ..++..+..+|.|++.+..+... .++.+|...++.++ .+|||..|+.+
T Consensus 182 ~~~~V~wcp~~~~------~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVN------KVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred Ccceeeecccccc------cceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 4466788887654 45566677778887766655433 44456776665543 58999999999
Q ss_pred eCCCcEEEEeCC-----CCceeEEeecCCC-CeEEEEEccCC---------CEEEEeC---CeEEEEECCCCcee
Q 006808 136 GADGMVCEIDPL-----TGSLLGKFRASTK-GISCMAVSSDG---------KMLATAA---GQLKTFNCSDHKKM 192 (630)
Q Consensus 136 ~~dg~v~iwd~~-----~~~~~~~~~~~~~-~v~~l~~~p~~---------~~l~~~~---g~i~lwd~~~~~~~ 192 (630)
+.||.++.|.+. ..+|...++.|.+ +-.|.-++... .++++++ ..+++|.....+|+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999999888754 3356677777774 33333343221 2344444 57888988777765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.096 Score=34.92 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=29.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~ 151 (630)
...|.+++|+|...+|+.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 357999999999999999999999999998 5554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=3.2 Score=44.16 Aligned_cols=140 Identities=6% Similarity=-0.103 Sum_probs=65.4
Q ss_pred CcEEEEEeCCC-----eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC--CcEEEEeCCCCceeEEeecC
Q 006808 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 86 ~~~l~~~~~~g-----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~ 158 (630)
+.++++|+.++ .+..||+.++.............-.+++ .-+|...+.||.+ ..+..||..+++- ..+..-
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W-~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAW-VNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeE-EECCCC
Confidence 44556666443 4778998887653211111111111122 2356666677653 3578888765422 111111
Q ss_pred CCCe-EEEEEccCCCEEEEeC-----CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 159 TKGI-SCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 159 ~~~v-~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
..+. ......-+|++.+.|+ ..+..||..+.+-.. .+....... + +..-+++..+.|| ...+||..
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~-~~~~~~~IYv~GG----~~e~ydp~ 423 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-C-ALVFGRRLFLVGR----NAEFYCES 423 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-e-EEEECCEEEEECC----ceEEecCC
Confidence 1111 1112223677777776 357788887654221 111111111 1 1233455444443 46778887
Q ss_pred CCc
Q 006808 231 GVK 233 (630)
Q Consensus 231 ~~~ 233 (630)
+.+
T Consensus 424 ~~~ 426 (480)
T PHA02790 424 SNT 426 (480)
T ss_pred CCc
Confidence 654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=5 Score=39.32 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEE-CCCCcee
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFN-CSDHKKM 192 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd-~~~~~~~ 192 (630)
.-.+.+..+..+++|.+++++..-....-||--...-...-+.....|..|.|.|++.+.+++. |.|+.=+ .......
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW 221 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence 3446788999999999888886666666787432111111222456899999999998877666 7888776 2222211
Q ss_pred eE--ee--cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCEE
Q 006808 193 QK--FS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYV 267 (630)
Q Consensus 193 ~~--~~--~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 267 (630)
.. .+ .....+..++|.+++...++++ .+.+ +.....++.- ...... .-+.....+.++. | ..-
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l-~~S~DgGktW--~~~~~~~~~~~n~~~i~f~~-----~--~~g 289 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTL-LVSTDGGKTW--QKDRVGENVPSNLYRIVFVN-----P--DKG 289 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEES--TT-E-EEESSTTSS---EE-GGGTTSSS---EEEEEE-----T--TEE
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeC--CccE-EEeCCCCccc--eECccccCCCCceEEEEEcC-----C--Cce
Confidence 11 11 1223478999999887777665 5544 3444555421 111111 2244556666664 3 344
Q ss_pred EEEecCCcEEEE
Q 006808 268 LAISETGVCYIW 279 (630)
Q Consensus 268 ~s~s~dg~i~iw 279 (630)
.+.+.+|.|.-|
T Consensus 290 f~lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLGQDGVLLRY 301 (302)
T ss_dssp EEE-STTEEEEE
T ss_pred EEECCCcEEEEe
Confidence 455677877655
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=4.7 Score=38.50 Aligned_cols=116 Identities=7% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeEEEEEccCCCEEEEeC--CeEEEEECCCCce
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK 191 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~ 191 (630)
+-...+.++.|+|+.+.|++......-.+|=...|+.++++.-.. ...-.+.+..+|.++++-- +.++++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 445569999999999999998888877777767899988865322 2345677777776666554 6777776655422
Q ss_pred ee-----Eee----cC-CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 192 MQ-----KFS----GH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 192 ~~-----~~~----~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+. .++ .+ ....-.++|.|....|+++- +-+=+.||.+..
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~ 211 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQ 211 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEec
Confidence 11 111 12 44567899999988888765 444566665553
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.5 Score=45.84 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=90.6
Q ss_pred CcEEEEEeCCC------eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~g------~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~~~~~ 153 (630)
+.++++|+..+ .+..||+.++....-....+...-.++++. +|...++||.| .++..||..+.+ ..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-ee
Confidence 56677777764 388999998855422222233344455554 45677888888 367788877665 11
Q ss_pred EeecCCCCeEEEEE-ccCCCEEEEeC-------CeEEEEECCCCceeeEeecCCCCeEEEEE-eeCCcEEEEEeeCCC--
Q 006808 154 KFRASTKGISCMAV-SSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTF-SDNGKYVLSSAVGER-- 222 (630)
Q Consensus 154 ~~~~~~~~v~~l~~-~p~~~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~-sp~~~~l~~~~~~d~-- 222 (630)
.+..-..+-..... .-+|.+.++|+ .++..||..+.+--.. .....+..+... .-+|...+++| .++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG-~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGG-GDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcC-cCCCc
Confidence 11111111111111 12577777777 3788899877642111 111112222222 23466666655 343
Q ss_pred ----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 223 ----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 223 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
.+..||..+..-. ....+........+... ++...+.|+.||
T Consensus 441 ~~l~sve~YDP~t~~W~---~~~~M~~~R~~~g~a~~-------~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWT---LIAPMNTRRSGFGVAVL-------NGKIYVVGGFDG 486 (571)
T ss_pred cccceEEEEcCCCCcee---ecCCcccccccceEEEE-------CCEEEEECCccC
Confidence 5778888776522 22222222222222322 466777777776
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.42 E-value=5 Score=38.59 Aligned_cols=213 Identities=12% Similarity=0.140 Sum_probs=111.0
Q ss_pred cceeEeEECCCCCEEEEeeCCCcEEEEECC------CC-cEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 6 IRDILTSFSPALDYFAICSGDARIKIWDTL------KG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~------~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
|+.+-++|+|.+.+-++....+...+||.. .. .++-++..... .+.....+-+.|+..+.
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-------------~~~~~~PTGiVfN~~~~ 89 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-------------LAAEGTPTGQVFNGSDT 89 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-------------CCCCCCccEEEEeCCCc
Confidence 344567999999877777777899999986 11 12222221111 00111222233322110
Q ss_pred ---ccccccCCcEEEEEeCCCeEEEEEccCCee-----eEEccCCCCCCE-EEEEEec--CCCEEEEEe-CCCcEEEEeC
Q 006808 79 ---KKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGV-SAISFAT--HGSCIYSAG-ADGMVCEIDP 146 (630)
Q Consensus 79 ---~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~-----~~~~~~~h~~~v-~~~~~s~--~g~~l~s~~-~dg~v~iwd~ 146 (630)
....+.+...++.++.+|+|.-|...-+.. ...+.....+.| ..+++.. .+.+|+.+. ..++|.+||-
T Consensus 90 F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 90 FVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred eEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 000011245579999999999999743322 112211222333 3455543 356777665 6789999984
Q ss_pred CCCceeEE---eecCC-----CC-----------eEEEEEccCCCEEEEe-C-CeEEEEECCCCceeeEee--cCCCCeE
Q 006808 147 LTGSLLGK---FRAST-----KG-----------ISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFS--GHPGAVR 203 (630)
Q Consensus 147 ~~~~~~~~---~~~~~-----~~-----------v~~l~~~p~~~~l~~~-~-g~i~lwd~~~~~~~~~~~--~h~~~v~ 203 (630)
. .+.+.. |.... .+ |+-..-.++++.=+.+ + |-|-+||+ .|+.++++. +.-...+
T Consensus 170 ~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPW 247 (336)
T TIGR03118 170 S-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPW 247 (336)
T ss_pred c-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCc
Confidence 3 222111 11110 00 1111112222111111 2 68999996 677888774 2223445
Q ss_pred EEEEeeC-----CcEEEEEeeCCCeEEEEEcCCCc
Q 006808 204 FMTFSDN-----GKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 204 ~l~~sp~-----~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.|+..|- ...|+++-..||+|..||..+++
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 6666552 23456666789999999998876
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.95 Score=50.61 Aligned_cols=128 Identities=12% Similarity=-0.005 Sum_probs=78.6
Q ss_pred EEEEeCCCe-EEEEEccCCeee----EEcc------CCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCC-ceeEEe
Q 006808 89 LVLGTGGGD-VLALAVSAGQLK----WRLS------DCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTG-SLLGKF 155 (630)
Q Consensus 89 l~~~~~~g~-v~iwd~~~~~~~----~~~~------~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~-~~~~~~ 155 (630)
.++-+.+|. |..||+.+-..- ...+ ......+.++.|+|.-.. .+.+..|+.|++.-+... +.+..+
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~ 195 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF 195 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc
Confidence 344444454 889998653211 0111 112234678888885433 566678888888766432 222222
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC----CCCeEEEEEeeCCcEEEEEe
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~~~~ 218 (630)
. ....++|++|+|.|+.+++|. |++.-|-. .++....+.+. ...|.+|+|-....++++-+
T Consensus 196 p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 196 P-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred C-cccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 3 345789999999999999998 78877764 33333333322 36799999987777766643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.33 E-value=5.7 Score=38.92 Aligned_cols=137 Identities=14% Similarity=0.156 Sum_probs=72.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC-CCCceeEE----eecCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK----FRASTK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~-~~~~~~~~----~~~~~~ 160 (630)
+.+++++....-..-|+.-...-.... ......|.++.|.|++...+.+ ..|.|+.=+. ........ +.....
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~ 233 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY 233 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred CcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence 566666544444567876543222121 2345789999999998765544 8888887762 22222111 111223
Q ss_pred CeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
.+..++|.+++...++|+ |.+ +.....|+.-..-+ .-......|.|.+..+-++.+ .+|.|--|
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~ 301 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY 301 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred eeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence 588999999998888888 544 45556666544432 224568889998777766665 48876544
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=4.7 Score=42.89 Aligned_cols=140 Identities=10% Similarity=-0.029 Sum_probs=64.0
Q ss_pred CcEEEEEeCC--CeEEEEEccCCeeeEEccCCCCC-CEEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceeE--Eeec
Q 006808 86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLG--KFRA 157 (630)
Q Consensus 86 ~~~l~~~~~~--g~v~iwd~~~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~s~~~dg---~v~iwd~~~~~~~~--~~~~ 157 (630)
+.+.++|+.+ ..+..||+.++.......-.+.. ....+. -+|+..+.||.++ .+..||..+.+=.. .+..
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 5555666643 34888998776543111111111 111222 2566667777543 46778876543111 1111
Q ss_pred CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeCC----CeEEEEEcCC
Q 006808 158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDG 231 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~ 231 (630)
..... ++ ..-++++.+. +|.+.+||..+++-. ..++...... +++ .-+|+..++||... ..+..||..+
T Consensus 397 ~r~~~-~~-~~~~~~IYv~-GG~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 397 PHYKS-CA-LVFGRRLFLV-GRNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccccc-eE-EEECCEEEEE-CCceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 11111 22 2234544444 456778888765422 2222111122 222 23566666665311 2455666655
Q ss_pred C
Q 006808 232 V 232 (630)
Q Consensus 232 ~ 232 (630)
.
T Consensus 472 ~ 472 (480)
T PHA02790 472 Y 472 (480)
T ss_pred C
Confidence 4
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.7 Score=45.33 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=72.4
Q ss_pred CCCCEEEEEEecC----CCEEEEEeCCCcEEEEeCC-----CCceeEEeecCC-C--C--eEEEEEccCCCEEEEeC-Ce
Q 006808 116 HPGGVSAISFATH----GSCIYSAGADGMVCEIDPL-----TGSLLGKFRAST-K--G--ISCMAVSSDGKMLATAA-GQ 180 (630)
Q Consensus 116 h~~~v~~~~~s~~----g~~l~s~~~dg~v~iwd~~-----~~~~~~~~~~~~-~--~--v~~l~~~p~~~~l~~~~-g~ 180 (630)
.-..|.++.|.|- -..+++.-....|.+|.+. +++.+.....+- . + -..+.|+|....|++-. ..
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d 134 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD 134 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence 3356899999884 3356666778899999875 222222211111 1 1 24578999988887765 33
Q ss_pred E-EEEECCC--CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 181 L-KTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 181 i-~lwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+ .++++.. .+....+ ...+.|.|.+|.+||+.|+++-...=.-++||-....
T Consensus 135 vSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 135 VSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred eeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 3 3344432 2333334 3567899999999999888765223356888865543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=93.88 E-value=6.3 Score=37.76 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEe-CCCCceeE-EeecC--CCCeEEEEEccCCCEEEEeC-----CeEEEEECC-
Q 006808 118 GGVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLG-KFRAS--TKGISCMAVSSDGKMLATAA-----GQLKTFNCS- 187 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~dg~v~iwd-~~~~~~~~-~~~~~--~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~- 187 (630)
..+....|++++...+....+...+++. ..++.... .+... ...|..+.++|||..++... +.|++--+.
T Consensus 66 ~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 66 GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred CccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 3678889999976655555566666663 33333221 12211 12899999999999887654 566665443
Q ss_pred --CC--c----eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 188 --DH--K----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 188 --~~--~----~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.+ . .+.........++.+.|.+++.+++.+...+..+..
T Consensus 146 ~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 22 1 111122334678999999999887777655554443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=14 Score=41.17 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=58.9
Q ss_pred CcEEEEEe-CCCe----EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCC--cee
Q 006808 86 SSLLVLGT-GGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG--SLL 152 (630)
Q Consensus 86 ~~~l~~~~-~~g~----v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~--~~~ 152 (630)
+++|+.+. .+|. |++.|+.+|..+.....+ .-..++|.+|++.|+.+..+ ..|+.+++.++ +..
T Consensus 138 g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~ 214 (686)
T PRK10115 138 NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE 214 (686)
T ss_pred CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence 55555544 3343 889999888744333221 12569999999876655432 36888888887 334
Q ss_pred EEeecCCCCeE-EEEEccCCCEEEEeC-----CeEEEEEC
Q 006808 153 GKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNC 186 (630)
Q Consensus 153 ~~~~~~~~~v~-~l~~~p~~~~l~~~~-----g~i~lwd~ 186 (630)
..+........ .+..+.++++++..+ +.+.+|+.
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 44554333333 333344787766544 47888884
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.58 E-value=4.3 Score=36.61 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=91.2
Q ss_pred CCCEEEEeeC--CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEE
Q 006808 16 ALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLG 92 (630)
Q Consensus 16 dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~ 92 (630)
+|.++.+.+. ...|++||+.+|+.+.+-+-.. ...|.. .++.+ ++.+ ..-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~FgE---------Git~~--------------gd~~y~LT 107 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFGE---------GITKL--------------GDYFYQLT 107 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC----cccccc---------ceeec--------------cceEEEEE
Confidence 3455555543 4579999999998876543210 011111 11100 3333 334
Q ss_pred eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC--CCC---eEEEEE
Q 006808 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKG---ISCMAV 167 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~---v~~l~~ 167 (630)
-.+|.-..||..+-+++.++. ..+.=.+++ .|+..|+.++...+++.-|..+.....++... ..+ +.-+.|
T Consensus 108 w~egvaf~~d~~t~~~lg~~~--y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~ 183 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFS--YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW 183 (262)
T ss_pred eccceeEEEChHHhhhhcccc--cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee
Confidence 456778899998888775553 333344444 36667777766777877777655443332211 112 222333
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEe------------ecCCCCeEEEEEeeCCcEEEEEe
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKF------------SGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~------------~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
- +|...|-.- ..|...+..+|+.+..+ ..|..-.+.+++.|++..|+.+|
T Consensus 184 V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 184 V-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred e-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2 343333221 34445555666554432 22344567889999886666555
|
|
| >PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.043 Score=54.43 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=5.5
Q ss_pred HHHHHHHHHhcccc
Q 006808 529 QWIYFILVNHGHHL 542 (630)
Q Consensus 529 ~wl~~ll~~h~~~l 542 (630)
-||+.- ..|...|
T Consensus 14 dWi~~~-~~~~~Kl 26 (458)
T PF10446_consen 14 DWIRQD-TDYKRKL 26 (458)
T ss_pred hhhhcc-ccccccc
Confidence 355444 3343333
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.40 E-value=9.5 Score=38.27 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.7
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (630)
.++|.|||++|++ ...|+|++++ ..+..
T Consensus 6 ~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 6 SMAFLPDGRLLVA-ERSGRIWVVD-KDGSL 33 (331)
T ss_dssp EEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred EEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence 5699999988775 4589999999 44544
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.40 E-value=5.1 Score=44.46 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=28.6
Q ss_pred CCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCC
Q 006808 115 CHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 115 ~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~ 149 (630)
.+...|..+.|+|. +.+|+.-..|+++++||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 34567899999985 578888889999999998654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=16 Score=40.82 Aligned_cols=188 Identities=8% Similarity=0.044 Sum_probs=93.2
Q ss_pred eEECCCCCEEEEeeC-----CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 11 TSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 11 ~~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
+.+||||++||.+.. ..+|++-|+.+|..+...- .... ..+.|.+.+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------------------~~~~-~~~~w~~D~-------- 183 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------------------DNVE-PSFVWANDS-------- 183 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------------------cCcc-eEEEEeeCC--------
Confidence 478999999987643 2357788888775322110 0111 236776542
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCe--eeEEccCCCCCCEE-EEEEecCCCEEEEEe---CCCcEEEEeCC--CCcee
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQ--LKWRLSDCHPGGVS-AISFATHGSCIYSAG---ADGMVCEIDPL--TGSLL 152 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~--~~~~~~~~h~~~v~-~~~~s~~g~~l~s~~---~dg~v~iwd~~--~~~~~ 152 (630)
..++++.... ..|+.+++.++. -. .+......... .+..+.++++++..+ .++.+.+++.. ++...
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~ 262 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF 262 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce
Confidence 3344443322 358888988872 22 12222222233 333344788755443 34578888843 34432
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeecC-C-CCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGH-P-GAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~h-~-~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
..+.........+. +..+.+++... ..|...++........+..+ . ..+..+.+. +.+|+.....++.-+
T Consensus 263 ~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~ 339 (686)
T PRK10115 263 VFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTS 339 (686)
T ss_pred EEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEE
Confidence 22332222223332 33334444333 24444455421222334334 3 367777777 445665555677655
Q ss_pred EEEcC
Q 006808 226 LWRTD 230 (630)
Q Consensus 226 vwd~~ 230 (630)
++-+.
T Consensus 340 l~~~~ 344 (686)
T PRK10115 340 LRQIN 344 (686)
T ss_pred EEEEc
Confidence 55443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.5 Score=47.22 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=66.6
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-cCCCCeEEEEEc--cCCCEEEEeC--CeEEEEECC-----C----
Q 006808 123 ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKGISCMAVS--SDGKMLATAA--GQLKTFNCS-----D---- 188 (630)
Q Consensus 123 ~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~l~~~--p~~~~l~~~~--g~i~lwd~~-----~---- 188 (630)
+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|. |+|..+++.+ +.|.+|.-. +
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334444444444445589999999887544322 346789999995 5777666655 788887431 1
Q ss_pred CceeeEe--ecCC-CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 189 HKKMQKF--SGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 189 ~~~~~~~--~~h~-~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
...++.+ ..|+ .+|.+..|.++|..++.+ ++.+.|++-.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk~ 156 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDKW 156 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEe---CCEEEEECCC
Confidence 1233333 3444 579999999999766554 4578888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.48 Score=52.79 Aligned_cols=153 Identities=7% Similarity=-0.034 Sum_probs=93.3
Q ss_pred eEeEECCCCCEEEEeeC--CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
+.+...+|++..++... +-.|..||+.+-..-.... .. -++++.. .-....-..|+.|+|.- .
T Consensus 104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~---~~--pl~~s~t--s~ek~vf~~~~~wnP~v--------p 168 (1405)
T KOG3630|consen 104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET---TV--PLKNSAT--SFEKPVFQLKNVWNPLV--------P 168 (1405)
T ss_pred eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh---cc--ccccccc--hhccccccccccccCCc--------c
Confidence 44477788876665543 3468888886533211000 00 0000000 01113345678898775 3
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec----CCCCe
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI 162 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v 162 (630)
...+++..|+.|++..+........-. .....+++++|+|.|+.++.|-..|++.-|-.. .+....+.. ....|
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrv 246 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRV 246 (1405)
T ss_pred chhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcce
Confidence 346788889999888775443322221 345678999999999999999999999888743 333333322 13589
Q ss_pred EEEEEccCCCEEEEeC
Q 006808 163 SCMAVSSDGKMLATAA 178 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~ 178 (630)
.+++|-....++++-+
T Consensus 247 l~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 247 LSVTWLSTQEFLVVYG 262 (1405)
T ss_pred eEEEEecceeEEEEec
Confidence 9999988777777654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=10 Score=38.06 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=81.1
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEE-EeCCCCceeEEee-cCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceee
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCE-IDPLTGSLLGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~i-wd~~~~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~ 193 (630)
.+.+.++.+.|++.+++++ ..|.+.. +| ..++...... .....++++.+.|+++.++++. |.+++=....|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 4568899999987655554 5565443 22 1223222222 2345789999999999888887 666532344443322
Q ss_pred Eeec----CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeee-ecCCceeeeeEEecCCccCCCCCEEE
Q 006808 194 KFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 194 ~~~~----h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
.... ....+.++.|.|++..+++ + .+|.+. .....++.- ..... ...+......+.. .++. .+
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G-~~G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~~~~------~~~~-~~ 317 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAG-G-GNGTLL-VSKDGGKTW--EKDPVGEEVPSNFYKIVFL------DPEK-GF 317 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEE-c-CCCeEE-EeCCCCCCC--eECCcCCCCCcceEEEEEe------CCCc-eE
Confidence 2211 1235788899998776554 4 366554 344444321 11110 1112233344443 2334 44
Q ss_pred EEecCCcEEEEEc
Q 006808 269 AISETGVCYIWYG 281 (630)
Q Consensus 269 s~s~dg~i~iwd~ 281 (630)
+.+..|.|.-|+.
T Consensus 318 ~~G~~G~il~~~~ 330 (334)
T PRK13684 318 VLGQRGVLLRYVG 330 (334)
T ss_pred EECCCceEEEecC
Confidence 5566688877764
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.98 E-value=2.6 Score=46.70 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.|..+.++|+|.+++..|..| |.|..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 488889999999988888766 444444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.96 E-value=3.9 Score=41.80 Aligned_cols=19 Identities=11% Similarity=0.425 Sum_probs=14.5
Q ss_pred CCEEEEEEecCCCEEEEEe
Q 006808 118 GGVSAISFATHGSCIYSAG 136 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~ 136 (630)
.....++|.|||.+.++.+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccccCceECCCCCEEEecc
Confidence 4578899999998766554
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.89 E-value=9.1 Score=36.66 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=52.9
Q ss_pred CcEEEEEeCCCeEEEEE-ccCCeeeE-Ecc-CCCCCCEEEEEEecCCCEEEEEe---CCCcEEEEeCC---CC------c
Q 006808 86 SSLLVLGTGGGDVLALA-VSAGQLKW-RLS-DCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPL---TG------S 150 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd-~~~~~~~~-~~~-~~h~~~v~~~~~s~~g~~l~s~~---~dg~v~iwd~~---~~------~ 150 (630)
+.+.++...+....++. ...+.... .+. ..-...|+++.++|||..++... .++.|.+--+. .+ .
T Consensus 77 g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 77 GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 44445555555555553 33332211 111 11112899999999999876654 34666665443 22 1
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 178 (630)
...........+..+.|.+++.+++.+.
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeC
Confidence 1122222345889999999998887776
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.79 E-value=4.8 Score=43.92 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCeEEEEEccC-------C----ee-------eEEccCCCCCCEEEEEEe--cCCCEEEEEeCCCcEEEEe
Q 006808 86 SSLLVLGTGGGDVLALAVSA-------G----QL-------KWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEID 145 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~-------~----~~-------~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~v~iwd 145 (630)
...|++|+.+|.|.+|.+.+ . .. ...+.......+++++++ ...++|++++....|.+|-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 67899999999999997631 0 00 001111233578999998 7777788888888888876
Q ss_pred CCCC--ce-eEEeecCCCCeEEEEEccCC-----C-EEEEeC--CeEEEEEC
Q 006808 146 PLTG--SL-LGKFRASTKGISCMAVSSDG-----K-MLATAA--GQLKTFNC 186 (630)
Q Consensus 146 ~~~~--~~-~~~~~~~~~~v~~l~~~p~~-----~-~l~~~~--g~i~lwd~ 186 (630)
+... +. ...-..+...|-+|+|-++. . +|++++ |.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5432 11 11111245578899997643 2 566666 88887776
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=92.22 E-value=15 Score=37.54 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=107.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 163 (630)
...+++++.+|.|.-.|..++..++...... ...+.+-.+..+|+ ++.++.++.+..+|..+|+.+..+.... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 5567888899999999999998776543222 12333333444665 8888889999999998999888877655 1122
Q ss_pred EEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCC---CCeEEEEEeeCCcEEEEEeeC--CCeEEEEEcCCCccccc
Q 006808 164 CMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA 237 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~---~~v~~l~~sp~~~~l~~~~~~--d~~i~vwd~~~~~~~~~ 237 (630)
.-.+..++..++... +.++..|..+|+..-...... ..+..-....++. ++.+. . ++.+.-.+...+...-.
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~-~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGS-DGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEec-CCCcceEEEEEccCCcEeee
Confidence 223333554444433 888888888887755543211 1111111122232 33332 2 34566666666653310
Q ss_pred e-eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 238 S-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
. ........... ....+....+ --+.-+..++.+|.+.-.+..+++.+-....
T Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~v-~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 225 QKVSQTIGRTAIS-TTPAVDGGPV-YVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeecccCccccc-ccccccCceE-EECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 0 00111111000 0000000000 0122345666777788888888877665544
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.14 E-value=16 Score=37.66 Aligned_cols=183 Identities=8% Similarity=0.025 Sum_probs=105.8
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----------------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----------------- 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~----------------- 148 (630)
..+|.+-+.||.+.+|+-..-.....+ .. .--.-.++|.+.-..|++++.+..+..|....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~l-p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~ 222 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFL-PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQD 222 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEc-CC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccc
Confidence 478899999999999987655433222 22 22334577888888899999888888886421
Q ss_pred ---Cce---eEEeecCCCCeEEEE---Ecc-CCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEE-EEe------eCC
Q 006808 149 ---GSL---LGKFRASTKGISCMA---VSS-DGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM-TFS------DNG 211 (630)
Q Consensus 149 ---~~~---~~~~~~~~~~v~~l~---~~p-~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l-~~s------p~~ 211 (630)
++. -.++.. ...+..+. ++. ...+++.|-.++.+.+- +|......+ ......++ .|. |+.
T Consensus 223 ~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 223 ISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPST 299 (418)
T ss_pred ccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCC
Confidence 110 111221 22333333 332 33455555588888885 565433222 23222222 222 221
Q ss_pred c-EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 212 K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 212 ~-~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+ .+++++ .++++.||.=.+-. ......+....+....+. .-...|++-+.+|.+.+--+-|.
T Consensus 300 ~~~llV~t-~t~~LlVy~d~~L~-----WsA~l~~~PVal~v~~~~-----~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 300 RLNLLVGT-HTGTLLVYEDTTLV-----WSAQLPHVPVALSVANFN-----GLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred ceEEEEEe-cCCeEEEEeCCeEE-----EecCCCCCCEEEEecccC-----CCCceEEEEcCCCcEEEEEeCCC
Confidence 1 355555 68999998643322 233344555556656554 44678999999999998765443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.11 E-value=6 Score=40.38 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=60.9
Q ss_pred eEEEEEccCC--ee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----Cce--e-EEeecC----CCC
Q 006808 97 DVLALAVSAG--QL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSL--L-GKFRAS----TKG 161 (630)
Q Consensus 97 ~v~iwd~~~~--~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-----~~~--~-~~~~~~----~~~ 161 (630)
.|.+++-..+ +. ..+.+...-....++++.++| +++++.....++.|... ++. + ..+... ...
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~ 125 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS 125 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc
Confidence 6777765433 21 112222223456889999888 44444444333435431 111 1 123221 234
Q ss_pred eEEEEEccCCCEEEEeC---------------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 162 ISCMAVSSDGKMLATAA---------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~---------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
...++|.|||.+.++.+ |.|.-++..+++. ..+...-.....++|+|+|..+++-
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence 67899999998766443 1244444444332 2222122334678999998877653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=91.73 E-value=20 Score=37.89 Aligned_cols=116 Identities=11% Similarity=0.126 Sum_probs=68.7
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC-----CeeeEEcc--CCCCCC--EEEEEEecCCCEEEEEeC
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-----GQLKWRLS--DCHPGG--VSAISFATHGSCIYSAGA 137 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~-----~~~~~~~~--~~h~~~--v~~~~~s~~g~~l~s~~~ 137 (630)
.+..+.|.|..... .-.+++.-....|.||.+.. ++...... .+..-+ ..++.|+|....|+.-..
T Consensus 58 hV~GlsW~P~~~~~-----~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 58 HVHGLSWAPPCTAD-----TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeeeeeecCcccCC-----CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 35567787765331 22355556667799999862 22221111 011112 357889998887766554
Q ss_pred CCcEEEEeCCCC--ceeEEeecCCCCeEEEEEccCCCEEEEeCC---eEEEEECCC
Q 006808 138 DGMVCEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAAG---QLKTFNCSD 188 (630)
Q Consensus 138 dg~v~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g---~i~lwd~~~ 188 (630)
...-.++++... +....++ ..+.|.|.+|.+||..|+++-| .-++||-..
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 444345555432 2223343 4578999999999998887763 568898543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.62 E-value=11 Score=34.56 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred CEEEEEeCCCcEEEEeCC--CCceeEEeecCCCCeEEEEEccCCCEEEEeC-----C---eEEEE-ECCC----Cceee-
Q 006808 130 SCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSSDGKMLATAA-----G---QLKTF-NCSD----HKKMQ- 193 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g---~i~lw-d~~~----~~~~~- 193 (630)
..|+.+...+.|.+|++. ..+....|..- +.|..+.++..|++|++-- . .+|+| |.+. ..+++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667789999988 34556667744 7899999999999999964 3 56664 2221 12222
Q ss_pred EeecC---------------------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 194 KFSGH---------------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 194 ~~~~h---------------------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+.|| ..++.+++.-|..-.|++++ ++.+.+|.+....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT 166 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence 22232 22445666556444455554 6689999886654
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.54 E-value=7.3 Score=32.57 Aligned_cols=107 Identities=15% Similarity=0.216 Sum_probs=66.9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCC--------ceeEEeecCCCCeEEEEEcc-----CCCEEEEeC-CeEEEEECCC
Q 006808 123 ISFATHGSCIYSAGADGMVCEIDPLTG--------SLLGKFRASTKGISCMAVSS-----DGKMLATAA-GQLKTFNCSD 188 (630)
Q Consensus 123 ~~~s~~g~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~~p-----~~~~l~~~~-g~i~lwd~~~ 188 (630)
-.|......|++++.-|.|.+++.... ..++.+. -...|++++-.| +...|+.|+ .++..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 455555556888888889999986532 2334444 345677775543 356788888 8999999988
Q ss_pred CceeeEeecCCCCeEEEEEee----CCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 189 HKKMQKFSGHPGAVRFMTFSD----NGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 189 ~~~~~~~~~h~~~v~~l~~sp----~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..-+.. +.-...|.++.+-. ....++++| +..|.-||....+
T Consensus 83 N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG--ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG--NCSIQGFDYEGNE 128 (136)
T ss_pred Cchhhh-hhCccceeEEEEEecCCCCCcEEEECc--eEEEEEeCCCCcE
Confidence 764422 22345677776632 233444443 6777777765543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=91.38 E-value=18 Score=36.64 Aligned_cols=191 Identities=15% Similarity=0.250 Sum_probs=104.3
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC-
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (630)
...+++....++-+.+||+. |+.+..+.........+.+. +.+ ..+ ..-|++++.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvryg--------------f~l---~g~------~vDlavas~R 122 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYG--------------FPL---NGK------TVDLAVASDR 122 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEE--------------EEE---TTE------EEEEEEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecc--------------eec---CCc------eEEEEEEecC
Confidence 34566766778889999986 66666553211100011110 111 100 111344443
Q ss_pred C---CeEEEEEcc--CCeeeEEccC-CC-----CCCEEEEEEe--c-CCC-EEEEEeCCCcEEEEeCC---CC----cee
Q 006808 95 G---GDVLALAVS--AGQLKWRLSD-CH-----PGGVSAISFA--T-HGS-CIYSAGADGMVCEIDPL---TG----SLL 152 (630)
Q Consensus 95 ~---g~v~iwd~~--~~~~~~~~~~-~h-----~~~v~~~~~s--~-~g~-~l~s~~~dg~v~iwd~~---~~----~~~ 152 (630)
+ ..|++|.+. ++... .+.. .+ ...+..+|+. + +|. +++..+.+|.+..|-+. .+ +.+
T Consensus 123 ~~g~n~l~~f~id~~~g~L~-~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV 201 (381)
T PF02333_consen 123 SDGRNSLRLFRIDPDTGELT-DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV 201 (381)
T ss_dssp CCCT-EEEEEEEETTTTEEE-E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE
T ss_pred cCCCCeEEEEEecCCCCcce-EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE
Confidence 2 358888765 34332 2211 11 1246777774 3 455 46667788988888764 23 457
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC-----CceeeEeec--CCCCeEEEEEee--CC-cEEEEEeeC
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NG-KYVLSSAVG 220 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-----~~~~~~~~~--h~~~v~~l~~sp--~~-~~l~~~~~~ 220 (630)
+.|.. ...+..|.......+|..+- .-|.-|+... ++.+....+ ....|-.|++.. ++ .||++++..
T Consensus 202 R~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 202 REFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp EEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred EEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 77775 34788888988877888887 3555566542 222322222 345788888754 33 488888877
Q ss_pred CCeEEEEEcCCC
Q 006808 221 ERYIALWRTDGV 232 (630)
Q Consensus 221 d~~i~vwd~~~~ 232 (630)
+++..||+....
T Consensus 281 ~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 281 DNSFAVYDREGP 292 (381)
T ss_dssp GTEEEEEESSTT
T ss_pred CCeEEEEecCCC
Confidence 889999997764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.36 E-value=13 Score=35.16 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=110.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee----cCCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----ASTKG 161 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~~ 161 (630)
+..-+.+...|.|--.|..+|+.. ++..+.......|..-|||..-++-+.. -|.-.|-++.... .|. .....
T Consensus 73 G~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~a~~n 149 (353)
T COG4257 73 GAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLEHADAN 149 (353)
T ss_pred CceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-EeecccccCCCc
Confidence 556677778888888899999876 3333555667788888888765544333 4556665554432 222 22346
Q ss_pred eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecC-CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.....|.+.|.+.+++. |----.|..+ ..+..|... ...-..|+..|+|...+++- .+..|-..|...+...
T Consensus 150 let~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiaridp~~~~ae---- 223 (353)
T COG4257 150 LETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARIDPFAGHAE---- 223 (353)
T ss_pred ccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEcccccCCcc----
Confidence 77889999999988876 2111112211 123344322 23456788899998777654 5778888887776432
Q ss_pred eeeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 240 VLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.+..... ..-.+-++.. |.|+.-++....|.++-||-.+
T Consensus 224 v~p~P~~~~~gsRriwsd-----pig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 224 VVPQPNALKAGSRRIWSD-----PIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eecCCCcccccccccccC-----ccCcEEEeccCCceeeEeCccc
Confidence 1121111 2223334444 7777777777777888777543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.24 E-value=9.2 Score=38.75 Aligned_cols=143 Identities=9% Similarity=0.132 Sum_probs=87.2
Q ss_pred EEEEeCCCeEEEEEccC--CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce----eEEeecCCCCe
Q 006808 89 LVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRASTKGI 162 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~--~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~v 162 (630)
.+.|...|.+.=|-+.. ......+.-...++|.++.|++|++.++.--.+.+|.+++....+. ..+.+.....|
T Consensus 36 qlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~I 115 (657)
T KOG2377|consen 36 QLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANI 115 (657)
T ss_pred eEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCccee
Confidence 45555555555554432 2333344434567999999999999999999999999999743322 22233344568
Q ss_pred EEEEEccCCCEEEEeCCeEEEEECCCC-ceeeEeecCCCCeEEEEEeeCCcEEEEEee-CCCeEEEEEcCC
Q 006808 163 SCMAVSSDGKMLATAAGQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG 231 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~-~d~~i~vwd~~~ 231 (630)
....|+.+....+....-+-+|.+... +.++..+.|...|.--.|.++.+.++-+++ ..+.+.=+.+++
T Consensus 116 lGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 116 LGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 899998764433333333455544332 234555677888888888888776554443 334444444443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.3 Score=41.19 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=23.9
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCcee
Q 006808 125 FATHGSCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 125 ~s~~g~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
+...++++++.+.+|.+++||+.+++.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAV 45 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence 4457889999999999999999988764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.22 Score=56.23 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHH
Q 006808 575 RLQLTMAQIDRA 586 (630)
Q Consensus 575 ~l~~~~~~~~~~ 586 (630)
-|++++..+..+
T Consensus 624 ~l~~ll~vl~~~ 635 (784)
T PF04931_consen 624 GLQLLLDVLDAK 635 (784)
T ss_pred HHHHHHHHhccC
Confidence 566666666643
|
The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=90.77 E-value=2.5 Score=39.84 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=73.6
Q ss_pred EEEEeCCCCceeEEeecC-CCCeEEEEEccCCCEEEEeC-----CeEEEEECCC---CceeeEee---cCCCCeEEEEEe
Q 006808 141 VCEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA-----GQLKTFNCSD---HKKMQKFS---GHPGAVRFMTFS 208 (630)
Q Consensus 141 v~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~---~~~~~~~~---~h~~~v~~l~~s 208 (630)
-.+||+.+++.. .+... .....+-.+.|||++|.+|+ ..+++++..+ ........ ....+--.+..-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 357888776543 22222 22333446778999999987 3688888654 11111111 112223334445
Q ss_pred eCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-----CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
|||+.|+.+|...-+..+|.-....... .....+. ......-.++.- |+|+.++.+..++ .|||..+
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~-~~~~~l~~~~~~~~~nlYP~~~ll-----PdG~lFi~an~~s--~i~d~~~ 198 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGP-VTLPFLSQTSDTLPNNLYPFVHLL-----PDGNLFIFANRGS--IIYDYKT 198 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCc-eeeecchhhhccCccccCceEEEc-----CCCCEEEEEcCCc--EEEeCCC
Confidence 7999999998654455555542221110 0010010 111122223333 8999998887754 4568777
Q ss_pred ccccccc
Q 006808 284 IEELRNT 290 (630)
Q Consensus 284 ~~~~~~~ 290 (630)
.+.++..
T Consensus 199 n~v~~~l 205 (243)
T PF07250_consen 199 NTVVRTL 205 (243)
T ss_pred CeEEeeC
Confidence 6554443
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.64 E-value=3.9 Score=41.84 Aligned_cols=134 Identities=16% Similarity=0.277 Sum_probs=82.7
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-------EEEEEeCCCcEEEEeCCC-CceeEEee--c--CC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLT-GSLLGKFR--A--ST 159 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-------~l~s~~~dg~v~iwd~~~-~~~~~~~~--~--~~ 159 (630)
|.....++-.|+..|+.+-.... |.. | -+.|.|..+ .-+.|-.+..|.-.|.+- |..+.... . ..
T Consensus 486 g~~~~kLykmDIErGkvveeW~~-~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK 562 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDL-KDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK 562 (776)
T ss_pred CCCcccceeeecccceeeeEeec-CCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence 34445577788888888765542 433 2 566776432 123344455566666553 32222211 1 11
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
....|..-..+| ++|+++ |.|++||--.-+....+++....|..+..+.+|++++++| ..+|-+-|++-
T Consensus 563 n~Fss~~tTesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i 633 (776)
T COG5167 563 NKFSSGMTTESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI 633 (776)
T ss_pred ccccccccccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence 233344333344 777777 9999999654444455677888999999999999999887 56788887654
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.45 E-value=6 Score=40.77 Aligned_cols=94 Identities=11% Similarity=0.169 Sum_probs=50.4
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecC
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH 198 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h 198 (630)
.|..+..++.|..++-+|.+|.+.++=.+..-.-..+...+..|.|=.+.-+. .+++.+ .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss-------------------~ 164 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS-------------------T 164 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC-------------------C
Confidence 46778888999998888889866555433222222333322333333332221 111111 1
Q ss_pred CCCeEEEEEeeCC---cEEEEEeeCCCeEEEEEcCCCc
Q 006808 199 PGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 199 ~~~v~~l~~sp~~---~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.-.+..++|+|+. ..|+.-. .|..|++|++...+
T Consensus 165 ~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 165 SLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPT 201 (741)
T ss_pred ceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcc
Confidence 1234556677754 3455544 37888888876654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.37 E-value=19 Score=35.24 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=78.9
Q ss_pred eEEEEEccCCeeeEEccCC-----CCCCEEEEEEecCC-----CEEEEE-eCCCcEEEEeCCCCceeEEeecC-------
Q 006808 97 DVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHG-----SCIYSA-GADGMVCEIDPLTGSLLGKFRAS------- 158 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~-----h~~~v~~~~~s~~g-----~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~------- 158 (630)
+|.+||+.+++.+.++... ..+.+..+.+.... .+++.+ +..+-+.++|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 4778888888876555322 23567888887622 244444 34457999999988765554321
Q ss_pred ------------CCCeEEEEEcc---CCCEEEEeC-CeEEEEECCC-----Cc---------eeeEeecC-CCCeEEEEE
Q 006808 159 ------------TKGISCMAVSS---DGKMLATAA-GQLKTFNCSD-----HK---------KMQKFSGH-PGAVRFMTF 207 (630)
Q Consensus 159 ------------~~~v~~l~~~p---~~~~l~~~~-g~i~lwd~~~-----~~---------~~~~~~~h-~~~v~~l~~ 207 (630)
...+..++.+| ++++|.... ..-++|.+.+ .. .+..+ |. ......+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 12366677765 666776665 3334443322 11 11222 22 235667889
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+++|..+++-- ..+.|..|+..+.
T Consensus 194 D~~G~ly~~~~-~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 194 DPNGNLYFTDV-EQNAIGCWDPDGP 217 (287)
T ss_dssp ETTTEEEEEEC-CCTEEEEEETTTS
T ss_pred CCCCcEEEecC-CCCeEEEEeCCCC
Confidence 99888776665 6889999998873
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.48 Score=51.41 Aligned_cols=161 Identities=12% Similarity=0.149 Sum_probs=79.9
Q ss_pred CeEEEEEcc--CCeee----EEccCCCCCCEEEEEEec---CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 96 GDVLALAVS--AGQLK----WRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 96 g~v~iwd~~--~~~~~----~~~~~~h~~~v~~~~~s~---~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
|.+.||++. .|+.. .+........+.-+.|.| +.-++..+-.++.+++..+.+... ..|.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 567888875 33321 222222334445555554 444555556677777766544322 33555666666555
Q ss_pred EccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-C
Q 006808 167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-H 245 (630)
Q Consensus 167 ~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~ 245 (630)
|-..|-.++. ..||||..|+..+ .||.+++|.+.-.......|..... |
T Consensus 232 ~~~~g~~~l~-----------------------------~lSpDGtv~a~a~-~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 232 FFAEGVLKLA-----------------------------SLSPDGTVFAWAI-SDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred HHhhchhhhe-----------------------------eeCCCCcEEEEee-cCCccceeeeeeeccccHhhhhccCCC
Confidence 5443321111 1678888888877 4888888876533222222322222 2
Q ss_pred Ccee-eeeEEecCCccC---CCCCEEEEEec-CCcEEEEEcCCcccc
Q 006808 246 PAVF-MDCRCIDNGGVD---DAGLYVLAISE-TGVCYIWYGQNIEEL 287 (630)
Q Consensus 246 ~~~~-~~~~~~~~~~~~---~~~~~l~s~s~-dg~i~iwd~~~~~~~ 287 (630)
.... ++..|....-.. +--.++++++. +..+++|.....+++
T Consensus 282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 2111 111111110000 11234555554 457999997776665
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.16 E-value=1.4 Score=28.52 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=25.4
Q ss_pred CCEEEEEEecCCC---EEEEEeCCCcEEEEeCCC
Q 006808 118 GGVSAISFATHGS---CIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 118 ~~v~~~~~s~~g~---~l~s~~~dg~v~iwd~~~ 148 (630)
+.|.++.|+|... +|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998544 777777889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=90.11 E-value=16 Score=41.40 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=73.6
Q ss_pred CCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCc-----eeEEeecCC----------CCeEEEEEccCCCEEEEeC-Ce
Q 006808 118 GGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-----LLGKFRAST----------KGISCMAVSSDGKMLATAA-GQ 180 (630)
Q Consensus 118 ~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~----------~~v~~l~~~p~~~~l~~~~-g~ 180 (630)
.+..+++|+| +...|+.....|...+|++..+. .+....... ..-..+.|.++...|++++ ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~ 225 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK 225 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence 3678999999 45579999999999999992111 111111111 1234788988888888888 89
Q ss_pred EEEEECCCCceeeEe--ecCCCCeEEEEEeeC--CcEEEEEeeCCCeEEEEEcCCC
Q 006808 181 LKTFNCSDHKKMQKF--SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 181 i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~--~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+.++|+.+......+ ......|..+.-+|. +..|+.+ ...|...++...
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~~ 278 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKSS 278 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccCC
Confidence 999999887653212 223457888888776 3333332 346777787773
|
These proteins are found in fungi. |
| >PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.29 Score=55.30 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=6.4
Q ss_pred HHHHHHHHhccccc
Q 006808 530 WIYFILVNHGHHLL 543 (630)
Q Consensus 530 wl~~ll~~h~~~l~ 543 (630)
|+-.|..+--+.|.
T Consensus 586 ~~~vlveiLLslls 599 (784)
T PF04931_consen 586 WSEVLVEILLSLLS 599 (784)
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444443
|
The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=89.54 E-value=5.7 Score=43.14 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=46.3
Q ss_pred CcEEEEEeCCCeEEEEEccC----CeeeEEcc-C--------------------CCCCCEEEEEEec----CCCEEEEEe
Q 006808 86 SSLLVLGTGGGDVLALAVSA----GQLKWRLS-D--------------------CHPGGVSAISFAT----HGSCIYSAG 136 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~----~~~~~~~~-~--------------------~h~~~v~~~~~s~----~g~~l~s~~ 136 (630)
...++++..+|.+....... +....... . .....+.++++++ +..++++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 66788889999987777654 21111110 0 0123456666666 677899999
Q ss_pred CCCcEEEEeCCCCceeEEeecC
Q 006808 137 ADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 137 ~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
.|+++|+||+.+++++.+....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEETT
T ss_pred CCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999998876644
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.3 Score=28.74 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=25.0
Q ss_pred cccceeEeEECCC-C--CEEEEeeCCCcEEEEECCCC
Q 006808 4 SNIRDILTSFSPA-L--DYFAICSGDARIKIWDTLKG 37 (630)
Q Consensus 4 ~~V~~~~~~fs~d-g--~~las~s~dg~i~vwd~~~~ 37 (630)
+.||.+ .|||+ + ++||..-.-|.|.|+|+.++
T Consensus 1 GAvR~~--kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCC--KFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEE--EeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 457555 99984 4 58888888899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=89.29 E-value=19 Score=39.12 Aligned_cols=169 Identities=11% Similarity=0.154 Sum_probs=88.6
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..| +.+.|.++++.+++.-.+|.|.+||...+.... .++.... ....|+ .|.+...
T Consensus 130 ~kv--v~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~--~~v~ys---------------~fv~~~~--- 187 (670)
T PF10395_consen 130 DKV--VGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSS--INVSYS---------------KFVNDFE--- 187 (670)
T ss_pred cce--EEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccc--cceehh---------------hhhcccc---
Confidence 455 677999999999999999999999993332211 1111000 011111 1111100
Q ss_pred cccCCcEEEEEeC-CCe---EEEEEc--cCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 82 RKLGSSLLVLGTG-GGD---VLALAV--SAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 82 ~~~~~~~l~~~~~-~g~---v~iwd~--~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
-..+..++++.+. .+. .+++.+ ...... .+. ..+........|+.+...|+.= .+++|.+|++...+..+
T Consensus 188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~-El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSIF-ELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQK 265 (670)
T ss_pred cccCCceEEEEEEcCCCcEEEEEEEeccCCcceE-EeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEE
Confidence 0001344444444 332 677877 222221 221 1122233344444433344433 67899999998887776
Q ss_pred EeecC-----C-CCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEee
Q 006808 154 KFRAS-----T-KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS 196 (630)
Q Consensus 154 ~~~~~-----~-~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~ 196 (630)
++.-. . ..+.++.--...+.|++..+.|++.|+.-...+.++.
T Consensus 266 tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 266 TISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 65432 1 2333443222445666666999999987666555553
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.077 Score=53.36 Aligned_cols=141 Identities=15% Similarity=0.181 Sum_probs=95.3
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+...|-|.+.-++.++.+..+..||-. |+...... .....-.++|.... ...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-------------------~tg~aldm~wDkeg--------dvl 89 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-------------------PTGKALDMAWDKEG--------DVL 89 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-------------------CchhHhhhhhcccc--------chh
Confidence 456788888778888888889999854 44443322 12233345665521 445
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
++.+-..+.+.+||+.+.... ++..+-+..-.-+.|++.+..++.+...|.+.+++..+.+.+-..-.|...+.+++|.
T Consensus 90 avlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 90 AVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 667778889999999865432 1111222222237788888888888889999999988877666655588899999999
Q ss_pred cCCCEEEEeC
Q 006808 169 SDGKMLATAA 178 (630)
Q Consensus 169 p~~~~l~~~~ 178 (630)
+.+..+..++
T Consensus 169 lEd~vil~dc 178 (615)
T KOG2247|consen 169 LEDYVILCDC 178 (615)
T ss_pred ccceeeecCc
Confidence 9876555444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.88 E-value=27 Score=37.98 Aligned_cols=146 Identities=15% Similarity=0.142 Sum_probs=70.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEE-c-cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec---CCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWR-L-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~-~-~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~ 160 (630)
..-|++...+|++++|++........ . .......|..+.|..+|-.+.+. +|.+.+-+-......++++. ..-
T Consensus 94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~ 171 (829)
T KOG2280|consen 94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNEL 171 (829)
T ss_pred CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccC
Confidence 45688899999999999864433210 1 11122345555555555434433 44444433111111222221 111
Q ss_pred CeEEEEEccCCC---EEEEeC---C-eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 161 GISCMAVSSDGK---MLATAA---G-QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 161 ~v~~l~~~p~~~---~l~~~~---g-~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+-.|-+..+++. .++-.. + .+..-+....+.. .+....+.+..+..||+.++|+--. ..|.|.+-+....+
T Consensus 172 ~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~-~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 172 PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH-ALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQ 249 (829)
T ss_pred CCcceeEecCCCcceeEEeechhhhhcccceeccccccc-ccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhh
Confidence 112222222221 111111 0 1111111122211 1222235677889999999988877 58888888877665
Q ss_pred cc
Q 006808 234 KQ 235 (630)
Q Consensus 234 ~~ 235 (630)
..
T Consensus 250 ~l 251 (829)
T KOG2280|consen 250 IL 251 (829)
T ss_pred hh
Confidence 43
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.7 Score=43.08 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=55.4
Q ss_pred eeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc------
Q 006808 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK------ 81 (630)
Q Consensus 8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~------ 81 (630)
..+++.+|++++.|+..+=|+|.++|+.++..++-+++.... .+.|........
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--------------------qc~wi~~~~~~~~~~~~~ 369 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--------------------QCGWIEVPEEGDRDRSNS 369 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--------------------eEEEEEeecccccccccc
Confidence 356799999999998877899999999999988888754322 223322211100
Q ss_pred ------cccCCcEEEEEeCCCeEEEEEccCCeeeEEc
Q 006808 82 ------RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL 112 (630)
Q Consensus 82 ------~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~ 112 (630)
.+...-+++.+-.-|.|.||.+++|..+..+
T Consensus 370 ~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 370 NSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred cccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 0011223445666788999999877665444
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.23 E-value=2.1 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=22.4
Q ss_pred ecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEE
Q 006808 196 SGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALW 227 (630)
Q Consensus 196 ~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vw 227 (630)
......-....|+|||++|+.++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455677889999999998888666 666555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=33 Score=34.47 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=66.5
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC----CCCeEEEEEccCCCEEEEeC-CeEEEEECCCCc
Q 006808 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK 190 (630)
Q Consensus 116 h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~ 190 (630)
-...++++.+.++++.++++ ..|.+.+=....|........+ ...+..+.+.|++..++++. |.+. .....++
T Consensus 213 ~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGK 290 (334)
T ss_pred CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCC
Confidence 34678999999988866654 5676643233444433322211 23578899999888888777 6554 4445454
Q ss_pred eeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 191 KMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 191 ~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.-.... .-......+.|..+++.++++ ..|.|-.|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEec
Confidence 433332 222357788888777776654 478777665
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=87.45 E-value=48 Score=36.14 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=83.8
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEeec-CCC-CeEEEEEccC------CCEEEEeC------Ce
Q 006808 117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRA-STK-GISCMAVSSD------GKMLATAA------GQ 180 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~~-~~~-~v~~l~~~p~------~~~l~~~~------g~ 180 (630)
...|.++.|.++++.+++.-.+|.|.+||...+. .+..+.. +.. -+++ +|-++ ..++++.+ -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence 4679999999999999999999999999983221 1112221 111 1122 23221 23333322 25
Q ss_pred EEEEECC-CCceeeEee---cCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccceeee-eecCC-ceeeeeE
Q 006808 181 LKTFNCS-DHKKMQKFS---GHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVL-AMEHP-AVFMDCR 253 (630)
Q Consensus 181 i~lwd~~-~~~~~~~~~---~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~-~~~~~~~ 253 (630)
.+++.+. ....+..+. .+........|.. +|..... .++.|.+|++..-+......+. .+... ...+...
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l---~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL---SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE---eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 6777771 122222332 1222223333332 4543332 3779999999877544111111 11111 1233333
Q ss_pred EecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
. |...+++-+ .++.|++.|+.-...+.++.
T Consensus 285 ~-------~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 P-------PSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred c-------CCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 2 444555544 34689999976555554443
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.40 E-value=3.5 Score=38.43 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEc------cC-------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~------~~-------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+.++++.+.+|.+++||+.+++.+... .. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 778999999999999999998765332 11 2345567777776666555543 4566677643
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.17 E-value=41 Score=38.21 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=92.3
Q ss_pred EEEEEccCCeeeEEccCCCC---CCEEEEEEecCCCE-EEEEe------------CCCcEEEEeCC-CCceeEEeecCCC
Q 006808 98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSC-IYSAG------------ADGMVCEIDPL-TGSLLGKFRASTK 160 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~---~~v~~~~~s~~g~~-l~s~~------------~dg~v~iwd~~-~~~~~~~~~~~~~ 160 (630)
|+++|..+++.+..+..+.. -.|.++.|+..... +..++ .+|.++.|++- .|+.+.-+....-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 78888888876554432222 24667777654333 33322 12335555532 3332222221111
Q ss_pred CeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEee--cCCCCeEEEEEeeCCcEEEEEeeCCCe-EEEEEcCCCcccc
Q 006808 161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~~~~~~d~~-i~vwd~~~~~~~~ 236 (630)
+-.-.+..|-+.++++|- ..+++|++.+.+.++... .-...|+.+.+. +..++++...++. ...|+-...+..
T Consensus 935 ~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~- 1011 (1205)
T KOG1898|consen 935 PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLI- 1011 (1205)
T ss_pred CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEE-
Confidence 222345567555665555 799999998877766543 224567777765 5677777765552 334444443322
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
++.-..-...++...+ -|-..++.+..=|.+.+-.+
T Consensus 1012 ---~fadD~~pR~Vt~~~~------lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1012 ---VFADDPVPRHVTALEL------LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred ---EEeCCCccceeeEEEE------ecCCceeeccccCcEEEEEC
Confidence 2222222333444444 35567888888788777654
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.80 E-value=52 Score=38.38 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.5
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECC
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTL 35 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~ 35 (630)
-.++|+|.-.++|.|...|.|++|-..
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred cceeeccccceEEEEEecccEEEeccc
Confidence 345999999999999999999999654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=86.38 E-value=33 Score=33.23 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=99.2
Q ss_pred CcEEEEEeCCCeEEEEEcc------CC-eeeEEccC--C--CCCCEEEEEEecCCC------------EEEEEeCCCcEE
Q 006808 86 SSLLVLGTGGGDVLALAVS------AG-QLKWRLSD--C--HPGGVSAISFATHGS------------CIYSAGADGMVC 142 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~------~~-~~~~~~~~--~--h~~~v~~~~~s~~g~------------~l~s~~~dg~v~ 142 (630)
+.+-++....+...+||.. .. ..+..+.. + ..+..+.+.|+.... .|+.+++||+|.
T Consensus 34 ~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTis 113 (336)
T TIGR03118 34 GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLS 113 (336)
T ss_pred CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEE
Confidence 4445666666778899886 11 22333321 1 234678888875332 367788999999
Q ss_pred EEeCCCCce-----eEEeecC-CC-CeEEEEEcc--CCCEEEEeC---CeEEEEECCCCcee--eEeecCC-----C--C
Q 006808 143 EIDPLTGSL-----LGKFRAS-TK-GISCMAVSS--DGKMLATAA---GQLKTFNCSDHKKM--QKFSGHP-----G--A 201 (630)
Q Consensus 143 iwd~~~~~~-----~~~~~~~-~~-~v~~l~~~p--~~~~l~~~~---g~i~lwd~~~~~~~--~~~~~h~-----~--~ 201 (630)
-|...-+.. ...+... .. -...+++.+ .+.+|..+. ++|.+||-.=.+.. ..|.... . .
T Consensus 114 aW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFn 193 (336)
T TIGR03118 114 GWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFN 193 (336)
T ss_pred eecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcc
Confidence 998532211 1222211 22 234455553 467888877 89999985322211 1111110 0 0
Q ss_pred eEE------EEE---eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC-----ceeeee--EEecCCccCCCCC
Q 006808 202 VRF------MTF---SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-----AVFMDC--RCIDNGGVDDAGL 265 (630)
Q Consensus 202 v~~------l~~---sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~ 265 (630)
|.. +.| .++.+.=+.+. .-|.|.+||+...-.. .+.+. .+-+.. ..|. ...|.
T Consensus 194 Iqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~l~~------r~as~g~LNaPWG~a~APa~FG----~~sg~ 262 (336)
T TIGR03118 194 VQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQLLR------RVASSGRLNAPWGLAIAPESFG----SLSGA 262 (336)
T ss_pred eEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCcEEE------EeccCCcccCCceeeeChhhhC----CCCCC
Confidence 111 111 12222212222 3568999988764322 22211 111111 1111 13466
Q ss_pred EEEEEecCCcEEEEEcCCccccccc
Q 006808 266 YVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 266 ~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
+|+---.||+|..||..+++.+...
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeee
Confidence 6665566999999999888765443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.79 E-value=12 Score=40.43 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=93.7
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE----eecCCCCeEEEEEccCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRASTKGISCMAVSSDG 171 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~~~v~~l~~~p~~ 171 (630)
-.|+||+.. |..+.++.-.| +.+..+.|+.+. .|++...+|++.+|++- |..+.. +......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~-~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKH-GELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcC-CCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 347777765 44443443234 388999999765 56777799999999975 332222 12223345666666678
Q ss_pred CEEEEeCCeEEEEECCCCceeeEeec---CCCCeEEEEEeeCCc--E-EEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 172 KMLATAAGQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGK--Y-VLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 172 ~~l~~~~g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~--~-l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
-.+.+.+|.+.+-+-.....+.+++. ..-+-+|-...+++. . ++-..-..+ ..++........ ...+..
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q----~~~~~~ 214 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQ----LHALSW 214 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccc----ccccCC
Confidence 77777777666554333223333332 111212222222221 1 111110000 122222222211 112222
Q ss_pred C-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 246 P-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
+ ..+.. +..+ |+.++|+--+..|.|.+-+.+..+.+..+.
T Consensus 215 ~~~~~~k-i~VS-----~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVK-ISVS-----PNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEE-EEEc-----CCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 2 22332 2233 889999999999999998887776665543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=85.42 E-value=40 Score=37.17 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=65.8
Q ss_pred EEEEEEec--CCCEEEEEeCCCcEEEEeCCC-------C-------------ceeEEeecCCCCeEEEEEc--cCCCEEE
Q 006808 120 VSAISFAT--HGSCIYSAGADGMVCEIDPLT-------G-------------SLLGKFRASTKGISCMAVS--SDGKMLA 175 (630)
Q Consensus 120 v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~-------~-------------~~~~~~~~~~~~v~~l~~~--p~~~~l~ 175 (630)
|+-|.... +...|+.|..||.|.+|.+.+ . ++...+. ....+.+++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55555443 344688899999999996521 1 0111222 23478899998 7888888
Q ss_pred EeC--CeEEEE--ECCCCcee-eEeecCCCCeEEEEEeeCC-----c-EEEEEeeCCCeEEEEEc
Q 006808 176 TAA--GQLKTF--NCSDHKKM-QKFSGHPGAVRFMTFSDNG-----K-YVLSSAVGERYIALWRT 229 (630)
Q Consensus 176 ~~~--g~i~lw--d~~~~~~~-~~~~~h~~~v~~l~~sp~~-----~-~l~~~~~~d~~i~vwd~ 229 (630)
+++ ..|.|| .+...+.. ..-..|...|.+|+|-++. . .+++++ -.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-I~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-ISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-ccCcEEEEEE
Confidence 888 445554 44322211 1111255678899997643 2 454454 5898888887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.31 E-value=13 Score=42.86 Aligned_cols=145 Identities=17% Similarity=0.277 Sum_probs=78.5
Q ss_pred eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEc
Q 006808 24 SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAV 103 (630)
Q Consensus 24 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~ 103 (630)
+.|+.+.+|+..++.....+.+....+..+..-.+ ..|.....+ ..+|++++ --.|.++-+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP-kpgvFv~~I-----------------qhlLvvaT-~~ei~ilgV 156 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP-KPGVFVPEI-----------------QHLLVVAT-PVEIVILGV 156 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecC-CCCcchhhh-----------------heeEEecc-cceEEEEEE
Confidence 35789999999998777777765555443322111 011111111 22333333 334444433
Q ss_pred cCCee--eEEccC------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC--C---c-e----------------eE
Q 006808 104 SAGQL--KWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--G---S-L----------------LG 153 (630)
Q Consensus 104 ~~~~~--~~~~~~------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~--~---~-~----------------~~ 153 (630)
.-.+. ....+. -....|+|+....+|+.|++| .||.++-.-... + + | +-
T Consensus 157 ~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred EeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 21111 001111 123568899977788766665 666444332221 1 1 1 11
Q ss_pred Eee-cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC
Q 006808 154 KFR-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD 188 (630)
Q Consensus 154 ~~~-~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~ 188 (630)
.+. .+..+|..+++...-..+.+-+ |+|.+|++..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 122 3456899999988777777766 8999999976
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.21 E-value=74 Score=36.18 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=75.4
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC----eeeEEccCCCCC----------CEEEEEEecCCC
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPG----------GVSAISFATHGS 130 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~----~~~~~~~~~h~~----------~v~~~~~s~~g~ 130 (630)
+.....++|+|.+ ...||+....|.-.||++..+ .........+.+ .-..+.|.++-+
T Consensus 145 g~~~aDv~FnP~~--------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 145 GFPHADVAFNPWD--------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CCccceEEeccCc--------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence 3456677777776 557999999999999999211 111122112222 234788888877
Q ss_pred EEEEEeCCCcEEEEeCCCCceeE-Ee-ecCCCCeEEEEEccC--CCEEEEeCCeEEEEECCC
Q 006808 131 CIYSAGADGMVCEIDPLTGSLLG-KF-RASTKGISCMAVSSD--GKMLATAAGQLKTFNCSD 188 (630)
Q Consensus 131 ~l~s~~~dg~v~iwd~~~~~~~~-~~-~~~~~~v~~l~~~p~--~~~l~~~~g~i~lwd~~~ 188 (630)
.|+.++. ..+.++|+.+..... .. ......|..+.-+|. +..++..+..|...++..
T Consensus 217 ~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 217 RLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8888765 458899998775533 22 223347888888886 455555668888888876
|
These proteins are found in fungi. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=84.94 E-value=57 Score=34.62 Aligned_cols=144 Identities=12% Similarity=0.063 Sum_probs=66.1
Q ss_pred CcEEEEEeCC-------CeEEEEEccCCeeeEEccCC-CCC--CEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCc
Q 006808 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDC-HPG--GVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS 150 (630)
Q Consensus 86 ~~~l~~~~~~-------g~v~iwd~~~~~~~~~~~~~-h~~--~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~ 150 (630)
+.+++.|+.+ ..+.+||+.+..-......+ ... ........-++..++.|+.+ ..+..+|+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4455555542 23778888876543211111 001 11111112245555666654 357888887653
Q ss_pred eeEEeecC----CC-CeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeEeec----CCCCeEEEEEeeCCcEE
Q 006808 151 LLGKFRAS----TK-GISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 151 ~~~~~~~~----~~-~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l 214 (630)
-. .+... .. .-.+++. -++++++.|+ ..+..||+.+.+-. .+.. ...........-+++.+
T Consensus 256 W~-~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 256 WK-LLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLEVVQGKVW 332 (470)
T ss_pred EE-EcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEEEECCcEE
Confidence 22 11111 11 1122222 3456666665 25778888765421 1110 00011111112356666
Q ss_pred EEEeeCC----CeEEEEEcCCCc
Q 006808 215 LSSAVGE----RYIALWRTDGVK 233 (630)
Q Consensus 215 ~~~~~~d----~~i~vwd~~~~~ 233 (630)
+.++. + ..+.+||+.+.+
T Consensus 333 viGG~-~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 333 VVYGF-NGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEECC-CCCccCceEEEECCCCE
Confidence 66652 3 458889988765
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=50 Score=33.97 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=66.9
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-----eEEeec--CCCCeEEEEEccCCCEEEEeC-CeEEEEECC
Q 006808 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRA--STKGISCMAVSSDGKMLATAA-GQLKTFNCS 187 (630)
Q Consensus 116 h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~--~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~ 187 (630)
....++++.|.++|..++++ ..|.+ +|....++. ...... ....+..+.|.+++..+++|. |.+... ..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TD 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CC
Confidence 34578999999998876655 55654 344444432 222221 123588999999999998888 666554 34
Q ss_pred CCceeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 188 DHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 188 ~~~~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
.|+.-.... .-......+.|.++++.++++ .+|.|--|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence 454433322 224567899998877766664 47776544
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=83.87 E-value=57 Score=33.74 Aligned_cols=141 Identities=8% Similarity=0.060 Sum_probs=78.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee---EEccCCCCCCEEEEEEec-----CCCEEEEEeCCCcEEEEeCCC--Cc-----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLT--GS----- 150 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~---~~~~~~h~~~v~~~~~s~-----~g~~l~s~~~dg~v~iwd~~~--~~----- 150 (630)
...|++|+..|.++||++..+... .-+...-..+|..+..-+ +...|+. =.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 578999999999999999655421 011112346777776532 1122333 3445667776521 11
Q ss_pred --eeEEeecCC--CCeEEEEEcc----C-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 151 --LLGKFRAST--KGISCMAVSS----D-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 151 --~~~~~~~~~--~~v~~l~~~p----~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.+..+..|. .....+++-| . ..++.+-+ |.+.+|+-+.....+.+++ ---...+.|.|....|+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 111112221 2334444444 2 24555555 9999999765543344443 222234678887778888774
Q ss_pred CCCeEEEEEc
Q 006808 220 GERYIALWRT 229 (630)
Q Consensus 220 ~d~~i~vwd~ 229 (630)
+..+..|..
T Consensus 195 -s~~l~~Yky 203 (418)
T PF14727_consen 195 -SWTLECYKY 203 (418)
T ss_pred -ceeEEEecH
Confidence 777877764
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=83.86 E-value=26 Score=33.95 Aligned_cols=94 Identities=11% Similarity=0.153 Sum_probs=57.5
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe------CCCcEEEEeCCCCceeEEeecC-----CCCeEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAS-----TKGISC 164 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~ 164 (630)
..|++||+.+.+.. .+-.+-.+.|+++.|..+.+.++.|. ....+..||+.+.. ...+... .++|..
T Consensus 16 ~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 44999999887764 34344667899999986666666653 35578889987553 3333331 357877
Q ss_pred EEEcc-CCCEEE-EeC-----CeEEEEECCCCce
Q 006808 165 MAVSS-DGKMLA-TAA-----GQLKTFNCSDHKK 191 (630)
Q Consensus 165 l~~~p-~~~~l~-~~~-----g~i~lwd~~~~~~ 191 (630)
+.+.. ++..+. .|. ..|..||-.+...
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~ 127 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSS 127 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEe
Confidence 77743 443333 332 2456665544443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.52 E-value=35 Score=31.05 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEE--EeC-CeEEEEECCCCceeeEeecCCCCe
Q 006808 128 HGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA--TAA-GQLKTFNCSDHKKMQKFSGHPGAV 202 (630)
Q Consensus 128 ~g~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~--~~~-g~i~lwd~~~~~~~~~~~~h~~~v 202 (630)
+|.++.+.+. ...|+.||+.+|+.+..-+-....+..=-...-|..+. +=. |....+|..+.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4555666654 34799999999988765443211111111111123322 222 677888988888777765 23333
Q ss_pred EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..++ .|+..|+.+. ...+++.-|..+-.
T Consensus 134 WgLt--~d~~~Limsd-GsatL~frdP~tfa 161 (262)
T COG3823 134 WGLT--SDDKNLIMSD-GSATLQFRDPKTFA 161 (262)
T ss_pred eeee--cCCcceEeeC-CceEEEecCHHHhh
Confidence 4443 4555566654 35567766665543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.52 E-value=56 Score=33.44 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=70.6
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
..|+| .++.||+|.+.+|.--.+++|-+++....+....+.. .+......+.-+.|..
T Consensus 65 d~G~I--~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~--------------~ck~k~~~IlGF~W~~------ 122 (657)
T KOG2377|consen 65 DKGEI--KSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ--------------ECKTKNANILGFCWTS------ 122 (657)
T ss_pred CCCce--eEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH--------------HhccCcceeEEEEEec------
Confidence 35789 5559999999999999999999998743322211110 0011122355566755
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTG 149 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~ 149 (630)
.+-++..+..| +-+|.+...+...+....|...|.-..|.++.+.++-++ ...++.=+-++++
T Consensus 123 ----s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 123 ----STEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ----CeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 33456666555 444444333332245567888999999999887744333 3334433444433
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=83.02 E-value=6.6 Score=24.99 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=28.0
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 127 THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 127 ~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
|++++++++. .++.|.++|..+++.+..+..... ...++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 5677766655 578999999999888888776333 344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.86 E-value=5.3 Score=25.47 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=22.9
Q ss_pred cCCCEEEEeC---CeEEEEECCCCceeeEeec
Q 006808 169 SDGKMLATAA---GQLKTFNCSDHKKMQKFSG 197 (630)
Q Consensus 169 p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~ 197 (630)
|++++|+++. ++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777777765 7999999998888777764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=82.47 E-value=63 Score=33.26 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=56.8
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEe-ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCce-----e
Q 006808 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK-----M 192 (630)
Q Consensus 121 ~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~-~~~-~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~-----~ 192 (630)
..+..+++|.+++.+..-..++-|| .|+.. ... ......++.+.+.+++.+++++. |.+. +....++. .
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccce
Confidence 3445567776655554333333344 23221 211 22344788999999999988887 5543 44444431 2
Q ss_pred eEeec--CCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 193 QKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 193 ~~~~~--h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
..... ....+..+.|.+++..++++ ..|.+...
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s 353 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRS 353 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEe
Confidence 22221 12358889999888766654 36765554
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.15 E-value=6.6 Score=39.69 Aligned_cols=145 Identities=20% Similarity=0.323 Sum_probs=78.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeE-EccCCCCC----CEE-EEEEecCCCEEEEEeCCCcEEEE-eCCCC-c----eeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHPG----GVS-AISFATHGSCIYSAGADGMVCEI-DPLTG-S----LLG 153 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~-~~~~~h~~----~v~-~~~~s~~g~~l~s~~~dg~v~iw-d~~~~-~----~~~ 153 (630)
++.+++-+. ..+.++++.+..... ++.....+ .|+ .+..-..|..+..++.||.|.-| |.+.+ + .++
T Consensus 232 g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R 310 (733)
T COG4590 232 GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIR 310 (733)
T ss_pred CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeee
Confidence 666776665 668888876554321 11111111 122 12222345668889999999888 54432 2 222
Q ss_pred EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.++-...++..+.-..+.+-+++-+ |++.++.....+.+- +..--..+..+++||.+.++++- +.+.|+++.+.+
T Consensus 311 ~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~N 387 (733)
T COG4590 311 NFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE--DQGKIRLAQLEN 387 (733)
T ss_pred ccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee--cCCceEEEEecC
Confidence 3332223333332222223344433 677666544433322 11122356678999999999874 467899999887
Q ss_pred Ccc
Q 006808 232 VKK 234 (630)
Q Consensus 232 ~~~ 234 (630)
..+
T Consensus 388 r~P 390 (733)
T COG4590 388 RNP 390 (733)
T ss_pred CCC
Confidence 654
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.56 E-value=0.22 Score=50.19 Aligned_cols=132 Identities=13% Similarity=0.162 Sum_probs=87.7
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeEEeec-CCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRA-STKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~l~ 166 (630)
++.++.+..|..||-...... .. .-++...+++|..+|..+ +.+-..+.+.+||+.+... +++.. ....-.-+.
T Consensus 49 lavaca~tiv~~YD~agq~~l-e~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~ 124 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAGQVIL-EL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLA 124 (615)
T ss_pred eehhhhhhHHHhhhhhcceec-cc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHh
Confidence 788888888888886543332 22 234567788888877764 4556788999999875422 11111 111112268
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
|++.+..++.+. |.+.+++..+.+.+-..-.|...++++++.+.+..+. ++ .|..+.+
T Consensus 125 wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil-~d-cd~~L~v 184 (615)
T KOG2247|consen 125 WSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL-CD-CDNTLSV 184 (615)
T ss_pred hccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee-cC-cHHHHHH
Confidence 899888888887 8999999887765544444889999999999875543 33 3554443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.72 E-value=30 Score=35.22 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=89.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEE-ecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++|..+ -..|||++|..-+. ..+.|+++.+...... +-... . +.....++.-...
T Consensus 221 ~~v~ql--lL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds--p-----------g~~~~~Vte~l~l-------- 276 (733)
T COG4590 221 SDVSQL--LLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDS--P-----------GDSRHQVTEQLYL-------- 276 (733)
T ss_pred cchHhh--EECCCCCEEEEecC-CeEEEEeecccccchhhhhhcC--C-----------CchHHHHHHHHHH--------
Confidence 345444 68899998876665 6889998876543221 11000 0 1000000000000
Q ss_pred ccCCcEEEEEeCCCeEEEE-EccCCeeeEEc-----cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 83 KLGSSLLVLGTGGGDVLAL-AVSAGQLKWRL-----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iw-d~~~~~~~~~~-----~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
..++..++++..||-|.-| |+..+... .+ .+-....+..+.-..+.+-|++-+..|++..+.....+.+- +.
T Consensus 277 L~Gg~SLLv~~~dG~vsQWFdvr~~~~p-~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~ 354 (733)
T COG4590 277 LSGGFSLLVVHEDGLVSQWFDVRRDGQP-HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FE 354 (733)
T ss_pred HhCceeEEEEcCCCceeeeeeeecCCCC-cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hh
Confidence 0135668888999987655 65543321 11 11111223333222233457777888888887654443322 22
Q ss_pred cCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCcee
Q 006808 157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM 192 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~ 192 (630)
..-..+..++++|.+.++++-. |.|+++.+++..+-
T Consensus 355 ~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 355 RAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred hhhcCcceeeeCcccchheeecCCceEEEEecCCCCC
Confidence 2223567789999999999887 89999988776543
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.72 E-value=1.2e+02 Score=35.31 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=74.8
Q ss_pred CcEEEEEeC---------CCeEEEEEccC-----Ce------eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 86 SSLLVLGTG---------GGDVLALAVSA-----GQ------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 86 ~~~l~~~~~---------~g~v~iwd~~~-----~~------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
..+|++|+. .|.+.|||+-. |+ ...-+.....++|..++=- +| +|+++ ....|.+|+
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSS-QGQKIIVRK 1122 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEEc-cCcEEEEEE
Confidence 567888875 47799998732 21 1112223455677766533 45 45555 345799999
Q ss_pred CC-CCceeEE-eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc-eeeEee--cCCCCeEEEEEeeCCc--EEEE
Q 006808 146 PL-TGSLLGK-FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFS--GHPGAVRFMTFSDNGK--YVLS 216 (630)
Q Consensus 146 ~~-~~~~~~~-~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~-~~~~~~--~h~~~v~~l~~sp~~~--~l~~ 216 (630)
+. ....+.. |- .-+++-....--.++|+.|. ..|.+.-..... .+..+. ...-.+.++.|--+|. ++++
T Consensus 1123 l~r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flv 1200 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLV 1200 (1366)
T ss_pred eccCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEE
Confidence 84 3333322 21 11222222223345666666 455544333221 122221 1223578888877765 4555
Q ss_pred EeeCCCeEEEEEcCCC
Q 006808 217 SAVGERYIALWRTDGV 232 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~ 232 (630)
+. .+|+|++|-....
T Consensus 1201 sD-a~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1201 SD-ADRNIHVYMYAPE 1215 (1366)
T ss_pred Ec-CCCcEEEEEeCCC
Confidence 54 6889988865443
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=80.35 E-value=3.9 Score=25.75 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=18.0
Q ss_pred ceeEeEECCCCCEEEEeeC-C--CcEEEE
Q 006808 7 RDILTSFSPALDYFAICSG-D--ARIKIW 32 (630)
Q Consensus 7 ~~~~~~fs~dg~~las~s~-d--g~i~vw 32 (630)
.....+|||||++|+.++. + |...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3466799999999987765 4 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 630 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.98 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.88 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.86 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.84 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.81 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.81 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.81 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.8 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.78 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.76 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.74 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.72 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.71 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.68 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.64 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.64 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.64 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.62 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.61 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.58 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.58 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.57 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.55 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.52 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.51 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.51 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.5 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.5 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.49 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.47 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.46 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.46 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.45 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.45 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.43 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.42 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.4 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.36 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.36 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.35 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.34 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.34 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.33 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.33 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.32 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.31 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.3 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.29 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.29 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.26 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.26 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.23 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.23 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.22 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.21 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.19 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.17 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.14 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.13 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.1 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.09 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.08 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.06 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.05 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.04 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.0 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.98 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.98 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.95 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.93 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.92 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.92 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.92 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.91 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.85 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.84 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.8 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.79 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.78 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.77 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.76 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.75 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.73 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.7 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.68 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.63 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.62 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.6 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.58 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.55 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.51 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.45 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.42 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.4 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.37 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.35 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.32 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.3 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.3 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.28 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.26 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.23 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.22 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.18 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.15 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.12 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.06 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.05 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.04 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.03 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.99 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.9 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.9 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.89 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.87 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.82 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.82 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.79 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.79 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.76 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.76 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.74 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.68 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.67 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.63 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.62 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.58 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.55 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.54 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.53 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.47 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.42 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.4 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.36 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.34 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.28 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.27 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.24 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.2 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.19 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.18 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.18 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.08 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.05 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.93 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.92 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.86 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.83 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.66 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.65 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.58 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.47 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.47 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.44 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.35 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.32 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.3 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.29 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.25 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.98 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.93 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.93 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.88 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.76 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.74 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.67 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.47 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.41 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.1 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.01 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.7 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 94.61 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.53 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.4 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 93.86 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.59 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.58 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.4 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.02 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 92.95 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.62 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 88.92 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 86.49 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 85.82 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.48 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=344.13 Aligned_cols=280 Identities=15% Similarity=0.247 Sum_probs=241.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++.+||+|+.||+|+|||+.+++....+.+|...+. ++.|.+.
T Consensus 108 ~~~V--~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~------------------~v~~~~~------ 161 (410)
T 1vyh_C 108 RSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ------------------DISFDHS------ 161 (410)
T ss_dssp SSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE------------------EEEECTT------
T ss_pred CCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE------------------EEEEcCC------
Confidence 4678 5669999999999999999999999999999988887665554 4455432
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.||.|++||+.+++++..+ .+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|
T Consensus 162 ---~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v 237 (410)
T 1vyh_C 162 ---GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 237 (410)
T ss_dssp ---SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence 778999999999999999998887555 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeC--------------------CcEEEEEeeC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--------------------GKYVLSSAVG 220 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~--------------------~~~l~~~~~~ 220 (630)
.++.|+|++.++++++ ++|++||+.++++...+.+|...|.+++|+|+ +.+|++++ .
T Consensus 238 ~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-~ 316 (410)
T 1vyh_C 238 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-R 316 (410)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-T
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-C
Confidence 9999999999999998 89999999999999999999999999999996 56788877 7
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeecc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (630)
|+.|++||+.++.. ...+..+...+..+.|+ |+|.+|++|+.||.|++||+.+++.+
T Consensus 317 D~~i~iwd~~~~~~-----~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~D~~i~vwd~~~~~~~------------- 373 (410)
T 1vyh_C 317 DKTIKMWDVSTGMC-----LMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCM------------- 373 (410)
T ss_dssp TSEEEEEETTTTEE-----EEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCC-------------
T ss_pred CCeEEEEECCCCce-----EEEEECCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceE-------------
Confidence 99999999998763 33333344455666776 99999999999999999998654321
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..+.+|...|.+++|+|++.+| +|||.|+++++|+.
T Consensus 374 ------------------------------------------~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 374 ------------------------------------------KTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC 409 (410)
T ss_dssp ------------------------------------------EEEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC-
T ss_pred ------------------------------------------EEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeC
Confidence 1234788899999999999999 99999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=330.49 Aligned_cols=281 Identities=14% Similarity=0.177 Sum_probs=237.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.++..+..+..|...+. +++|.+.
T Consensus 55 ~~~v--~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~------------------~~~~s~~------ 108 (340)
T 1got_B 55 LAKI--YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM------------------TCAYAPS------ 108 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE------------------EEEECTT------
T ss_pred CCce--EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE------------------EEEECCC------
Confidence 4678 5569999999999999999999999999999888876655444 4455443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+.+|++|+.++.|++|++.++. .......+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.+|.
T Consensus 109 ---~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 109 ---GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp ---SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred ---CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 7889999999999999998763 22233458999999999998774 8899999999999999999999999999
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
..|.+++|+|++.++++++ +.|++||++++.++..+.+|...|++++|+|++++|++++ .|+.|++||++.++..
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~-- 261 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-- 261 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE--
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEE--
Confidence 9999999999999999998 8999999999999999999999999999999999999988 6999999999887633
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
..+........+..+.|+ |+|.+|++|+.||.|++||..+++.+
T Consensus 262 -~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~------------------------------ 305 (340)
T 1got_B 262 -MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRA------------------------------ 305 (340)
T ss_dssp -EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEE------------------------------
T ss_pred -EEEccCCcccceEEEEEC-----CCCCEEEEECCCCeEEEEEcccCcEe------------------------------
Confidence 222222222345667777 99999999999999999997554321
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
..+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus 306 -------------------------~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd 340 (340)
T 1got_B 306 -------------------------GVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340 (340)
T ss_dssp -------------------------EEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred -------------------------eEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence 1234788899999999999999 9999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=354.24 Aligned_cols=345 Identities=17% Similarity=0.192 Sum_probs=264.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEeccccccccccccccccc--------------------
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLE-------------------- 60 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~-------------------- 60 (630)
..+| .+++|+|+|++||+|+.||+|+|||+.++. ....+.+|...+..+.|+|+-.
T Consensus 59 ~~~v--~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 59 SHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred CCce--EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence 4567 556999999999999999999999987543 4567888888888888887610
Q ss_pred -------ccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE
Q 006808 61 -------REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY 133 (630)
Q Consensus 61 -------~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 133 (630)
.+| ...+.+++|.|.. ...|++|+.|+.|++||..+++....+ .+|...|.+++|+|+|++|+
T Consensus 137 ~~~~~~l~gh-~~~v~~v~f~p~~--------~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 137 GTSNGNLTGQ-ARAMNSVDFKPSR--------PFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp CCBCBCCCCC-SSCEEEEEECSSS--------SCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEEE
T ss_pred CCCcceecCC-CCCceEEEECCCC--------CeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEEE
Confidence 011 1245566666542 346999999999999999988877555 58999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEEee-------cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceee-----------
Q 006808 134 SAGADGMVCEIDPLTGSLLGKFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ----------- 193 (630)
Q Consensus 134 s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~----------- 193 (630)
+++.|++|++||+.+++++..+. +|...|.+++|+|+|++|++++ ++|++||+.+++++.
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 99999999999999999988884 6899999999999999999998 899999998876543
Q ss_pred --------------------------------EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce---
Q 006808 194 --------------------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--- 238 (630)
Q Consensus 194 --------------------------------~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--- 238 (630)
.+.+|...|++++|+|+|++|++++ .|+.|++||+.++......
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~~ 365 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDV 365 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCS
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeecccC
Confidence 3357889999999999999999988 6999999999875421000
Q ss_pred ------ee--------e--------------------------eec---------C------------------------
Q 006808 239 ------CV--------L--------------------------AME---------H------------------------ 245 (630)
Q Consensus 239 ------~~--------~--------------------------~~~---------~------------------------ 245 (630)
.+ . .+. .
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 00 0 000 0
Q ss_pred -CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc--c--cccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 246 -PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE--L--RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 246 -~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
....+.++.|+ |+|++|++|+.||.|++||+.++.. + ..+......+. |+|+++ .+++++.|
T Consensus 446 ~~~~~v~~va~s-----pdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~----fspdg~----~las~s~d 512 (611)
T 1nr0_A 446 PISYNSSCVALS-----NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA----FSNNGA----FLVATDQS 512 (611)
T ss_dssp ECSSCEEEEEEC-----TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEE----ECTTSS----EEEEEETT
T ss_pred ecCCCceEEEEe-----CCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEE----ECCCCC----EEEEEcCC
Confidence 00112344555 9999999999999999999876532 1 12333333333 889988 89999998
Q ss_pred ccccCCceeEEEEEcCccCceeeE--EeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 321 DIVKPASVHTFVAYGLLLKPSFQK--ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
+.+++|+.. .. ...... ..+|...|.+++|+|||++| +|||.|+++++|++..
T Consensus 513 ~~v~~w~~~-----~~--~~~~~~~~~~~H~~~V~~v~fspdg~~l-asgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 513 RKVIPYSVA-----NN--FELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMNK 567 (611)
T ss_dssp SCEEEEEGG-----GT--TEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTC
T ss_pred CCEEEEEcC-----CC--CceeeeeeeeecccceeEEEECCCCCEE-EEEECCCcEEEEECCC
Confidence 877664421 10 111111 23599999999999999999 9999999999999864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=325.21 Aligned_cols=282 Identities=15% Similarity=0.194 Sum_probs=235.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||..++.....+..+...+..+.|+|+
T Consensus 64 ~~~V--~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~------------------------ 117 (354)
T 2pbi_B 64 GNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS------------------------ 117 (354)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT------------------------
T ss_pred CCeE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC------------------------
Confidence 4678 66699999999999999999999999999988887765554444444444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCe-----eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQ-----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+..+++|+.|+.+++|++.... .......+|...|.+++|+|++..|++++.|++|++||+.+++++..+.+
T Consensus 118 ---g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 118 ---GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp ---SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ---CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence 7889999999999999986532 11122246999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcc--CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 158 STKGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 158 ~~~~v~~l~~~p--~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|...|.+++|+| ++.+|++|+ |.|++||+++++++..+.+|...|++++|+|++.+|++++ .|++|++||++...
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRADR 273 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCCCc
Confidence 999999999988 568999988 8999999999999999999999999999999999999988 69999999998875
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
.. ..+........+..+.|+ |++.+|++|+.||.|++||+.+++.+
T Consensus 274 ~~---~~~~~~~~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~-------------------------- 319 (354)
T 2pbi_B 274 EV---AIYSKESIIFGASSVDFS-----LSGRLLFAGYNDYTINVWDVLKGSRV-------------------------- 319 (354)
T ss_dssp EE---EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTCSEE--------------------------
T ss_pred EE---EEEcCCCcccceeEEEEe-----CCCCEEEEEECCCcEEEEECCCCceE--------------------------
Confidence 33 222222222345566676 99999999999999999998655321
Q ss_pred hhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
..+.+|...|.+++|+|||.+| ++|+.|+++++|+
T Consensus 320 -----------------------------~~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 320 -----------------------------SILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------------------EEECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred -----------------------------EEEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence 1233788899999999999999 9999999999995
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=320.33 Aligned_cols=280 Identities=13% Similarity=0.159 Sum_probs=235.6
Q ss_pred CcccceeEeEECCC----CCEEEEeeCCCcEEEEECCCCcEE--EEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+|+ +.+||+|+.|++|+||++.++... ..+.+|... +.++.|.+.
T Consensus 32 ~~~V--~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~------------------v~~~~~~~~ 91 (321)
T 3ow8_A 32 DDAI--WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG------------------VVSVDISHT 91 (321)
T ss_dssp SSCE--EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------------EEEEEECSS
T ss_pred CCcE--EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCC------------------EEEEEECCC
Confidence 4678 55699985 679999999999999999877543 345555443 445555543
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+.++++++.||.|++||+.+++.+..+. .|...+.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 92 ---------~~~l~s~s~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 92 ---------LPIAASSSLDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred ---------CCEEEEEeCCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 6789999999999999999999886664 688889999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.+...|.+++|+|++++|++++ |.|++||+.+++.+..+.+|..+|++++|+|++++|++++ .|+.|++||+..+..
T Consensus 162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~~ 240 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHANL 240 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCCE
T ss_pred CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcce
Confidence 9999999999999999999998 8999999999999999999999999999999999999987 699999999988763
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhh
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 314 (630)
...+..+...+..+.|+ |++.+|++++.||.|+|||+.+++.+.
T Consensus 241 -----~~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------- 284 (321)
T 3ow8_A 241 -----AGTLSGHASWVLNVAFC-----PDDTHFVSSSSDKSVKVWDVGTRTCVH-------------------------- 284 (321)
T ss_dssp -----EEEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEE--------------------------
T ss_pred -----eEEEcCCCCceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCCCEEEE--------------------------
Confidence 23344444455667776 999999999999999999986654321
Q ss_pred hhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
++.+|...|.+++|+|+|.+| ++++.|+.+++|+.
T Consensus 285 -----------------------------~~~~h~~~v~~v~~s~~g~~l-~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 285 -----------------------------TFFDHQDQVWGVKYNGNGSKI-VSVGDDQEIHIYDC 319 (321)
T ss_dssp -----------------------------EECCCSSCEEEEEECTTSSEE-EEEETTCCEEEEEC
T ss_pred -----------------------------EEcCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEeC
Confidence 223677789999999999999 99999999999986
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=347.97 Aligned_cols=322 Identities=16% Similarity=0.181 Sum_probs=254.1
Q ss_pred CcccceeEeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+|++. +|++|+.|++|++||..++++...+.+|...+.++.|+|+
T Consensus 147 ~~~v--~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd----------------------- 201 (611)
T 1nr0_A 147 ARAM--NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD----------------------- 201 (611)
T ss_dssp SSCE--EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred CCCc--eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-----------------------
Confidence 3567 5569999997 5999999999999999999999888877766665555554
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccC------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (630)
+.+|++|+.||.|++||+.+++....+.. +|.+.|.+++|+|+|++|++++.|++|++||+.+++++.+
T Consensus 202 ----g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 202 ----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp ----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ----CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 78899999999999999999988766633 7999999999999999999999999999999998765543
Q ss_pred ------------------------------------------eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc
Q 006808 155 ------------------------------------------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 155 ------------------------------------------~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~ 190 (630)
+.+|...|.+++|+|+|++|++++ ++|++||+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 346888999999999999999998 899999998765
Q ss_pred eeeEe-e-------------------------------------------------------------------------
Q 006808 191 KMQKF-S------------------------------------------------------------------------- 196 (630)
Q Consensus 191 ~~~~~-~------------------------------------------------------------------------- 196 (630)
....+ .
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 43221 0
Q ss_pred --------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEE
Q 006808 197 --------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 197 --------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
.|...+.+++|+|+|++|++++ .|+.|++|++..+... ......|.. .+..+.|+ |+|++|+
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~---~~~~~~h~~-~v~~v~fs-----pdg~~la 507 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTIVHPA-EITSVAFS-----NNGAFLV 507 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEEECSS-CEEEEEEC-----TTSSEEE
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeC-CCCeEEEEEccCCcee---eeeccCCCC-ceEEEEEC-----CCCCEEE
Confidence 1234567899999999999988 6999999999875432 122334444 45667777 9999999
Q ss_pred EEecCCcEEEEEcCC-cccccc-----cCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCcee
Q 006808 269 AISETGVCYIWYGQN-IEELRN-----TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF 342 (630)
Q Consensus 269 s~s~dg~i~iwd~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~ 342 (630)
+++.|+.|++|++.+ ++.+.. |......+. |+|+++ .|++|+.|+.+++|+. ... .....
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~----fspdg~----~lasgs~D~~v~lW~~-----~~~-~~~~~ 573 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS----WSPDNV----RLATGSLDNSVIVWNM-----NKP-SDHPI 573 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE----ECTTSS----EEEEEETTSCEEEEET-----TCT-TSCCE
T ss_pred EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE----ECCCCC----EEEEEECCCcEEEEEC-----CCc-ccccc
Confidence 999999999999987 544332 333334444 889988 9999999997776542 110 01112
Q ss_pred eEEecc-CCCcEEEeecCCcceeeccccceecccccee
Q 006808 343 QKILVN-SGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 343 ~~~~~h-~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..+.+| ...|.+++|+|||. | +|++.|+++++|++
T Consensus 574 ~~~~~h~~~~v~~v~fs~d~~-l-~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 574 IIKGAHAMSSVNSVIWLNETT-I-VSAGQDSNIKFWNV 609 (611)
T ss_dssp EETTSSTTSCEEEEEEEETTE-E-EEEETTSCEEEEEC
T ss_pred hhhccCcccCeeEEEEcCCCE-E-EEecCCCCEEEEec
Confidence 345578 89999999999999 7 99999999999987
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=306.42 Aligned_cols=243 Identities=14% Similarity=0.258 Sum_probs=205.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .+++|+|+|++||+|+.||+|+|||+.++..+..+..|...+..+.|+++
T Consensus 13 ~~~V--~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------ 66 (304)
T 2ynn_A 13 SDRV--KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR------------------------ 66 (304)
T ss_dssp CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG------------------------
T ss_pred CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC------------------------
Confidence 4678 55599999999999999999999999999999888766555544444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (630)
+++|++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...
T Consensus 67 ---~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~ 142 (304)
T 2ynn_A 67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (304)
T ss_dssp ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred ---CCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence 788999999999999999999988666 479999999999999999999999999999999887 455678899999
Q ss_pred eEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEee--CCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 162 v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp--~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|.+++|+| ++.+|++|+ ++|++||+.++.....+. +|...+..+.|+| ++.+|++++ .|+.|++||+.+++
T Consensus 143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~-- 219 (304)
T 2ynn_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS-- 219 (304)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE--
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc--
Confidence 99999999 678899988 899999998887666554 5668899999987 677888887 69999999999876
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
+...+..+...+..+.|+ |++.+|++|+.||.|++||..+++.
T Consensus 220 ---~~~~~~~h~~~v~~~~~~-----p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 220 ---CVATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp ---EEEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ---cceeeCCCCCCEEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCce
Confidence 334444445556667776 9999999999999999999876654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=315.12 Aligned_cols=290 Identities=11% Similarity=0.084 Sum_probs=219.7
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| -+++|+|||++|++++ |+++++||.. +..+.............. .......+.+++|.+.
T Consensus 31 ~~v--~~~~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~d------- 93 (344)
T 4gqb_B 31 RQL--EAARYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAAPNEGFCSA---GVQTEAGVADLTWVGE------- 93 (344)
T ss_dssp SEE--EEEEECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGTTCGGGCSE---EEEESSCEEEEEEETT-------
T ss_pred CCE--EEEEECCCCCEEEEEe-CCceEEeece----eeeeccccccCCcceeee---eeccCCCEEEEEEeCC-------
Confidence 346 4559999999999888 7789999732 122221111000000000 0011235788999873
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEE---ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~---~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
..|++|+.||.|+|||+.+++.... ...+|...|++++|+|+|++|++|+.|++|++||+.+++++..+.+|..
T Consensus 94 ---~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 94 ---RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ---TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ---CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 4588999999999999998875432 2347999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEee--cCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 ~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.|.+++|+|++. +|++++ ++|++||+++++....+. .|...+.+++|+|++ ++|++++ .|+.|++||+++++.
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSC 249 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--C
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcE
Confidence 999999999875 677776 899999999999887764 456679999999965 4556655 799999999998763
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
+..+..+...+..+.|+ |++ .+|++|+.||.|+|||+.+++.+
T Consensus 250 -----~~~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~~-------------------------- 293 (344)
T 4gqb_B 250 -----VLSSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSELF-------------------------- 293 (344)
T ss_dssp -----CEEEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEEE--------------------------
T ss_pred -----EEEEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------
Confidence 33444445556677776 887 57999999999999997654321
Q ss_pred hhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.+|.+.|.+++|+|+|..|.+|+|.|+++++|++.
T Consensus 294 ------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 294 ------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 1237888999999999998654899999999999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=323.48 Aligned_cols=289 Identities=16% Similarity=0.234 Sum_probs=238.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.+++....+..|...+..+.|+|+
T Consensus 66 ~~~V--~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~------------------------ 119 (380)
T 3iz6_a 66 SGKV--YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN------------------------ 119 (380)
T ss_dssp SSCE--EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT------------------------
T ss_pred ccEE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC------------------------
Confidence 4678 56699999999999999999999999999999999888777766666665
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCe------eeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~------~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
+.+|++|+.|+.|++|++.+.. .......+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++++..+
T Consensus 120 ---g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 120 ---GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp ---SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred ---CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence 8889999999999999997532 1224456899999999999964 56999999999999999999998887
Q ss_pred -----ecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECC-CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 156 -----RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 156 -----~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.+|...|.+++|+| ++.++++|+ ++|++||++ .++.+..+.+|...|++++|+|++++|++++ .|++|++
T Consensus 197 ~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~l 275 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCRL 275 (380)
T ss_dssp CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEEE
T ss_pred ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEEE
Confidence 56888999999987 888999988 899999998 4577888999999999999999999999988 6999999
Q ss_pred EEcCCCccccceeeeeec-----CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccC
Q 006808 227 WRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (630)
||+++++.. ..+... .....+..++|+ |+|.+|++|+.||.|++||..+++.+....
T Consensus 276 wd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~---------- 337 (380)
T 3iz6_a 276 FDMRTGHQL---QVYNREPDRNDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWDTLLAEMVLNLG---------- 337 (380)
T ss_dssp EETTTTEEE---EEECCCCSSSCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEETTTCCEEEEEC----------
T ss_pred EECCCCcEE---EEecccccccccccCceEEEEEC-----CCCCEEEEEECCCCEEEEECCCCceEEEEe----------
Confidence 999987643 122111 112235667777 999999999999999999986654322110
Q ss_pred CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
. ...+|.+.|.+++|+|||.+| +|||.|+++++|++..
T Consensus 338 ------~-----------------------------------~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 338 ------T-----------------------------------LQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ------C-----------------------------------SCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECCS
T ss_pred ------c-----------------------------------ccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecCC
Confidence 0 002688899999999999999 9999999999999853
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=310.11 Aligned_cols=298 Identities=14% Similarity=0.162 Sum_probs=228.4
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+| .+++|+|+|++||+|+.|++|+|||+.++........ ..+|. ..+.+++|.|.
T Consensus 18 ~v--~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~--------------~~~h~-~~v~~~~~sp~-------- 72 (345)
T 3fm0_A 18 RC--WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL--------------SEGHQ-RTVRKVAWSPC-------- 72 (345)
T ss_dssp CE--EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE--------------CSSCS-SCEEEEEECTT--------
T ss_pred cE--EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee--------------ccccC-CcEEEEEECCC--------
Confidence 66 5569999999999999999999999988764322110 01332 24667777664
Q ss_pred CCcEEEEEeCCCeEEEEEccCCee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeEEeecCCC
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRASTK 160 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~ 160 (630)
+.+|++|+.|+.|++|++..+.. ....+.+|...|.+++|+|++++|++|+.|++|++||+.++. ++..+..|..
T Consensus 73 -g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 73 -GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp -SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred -CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 78899999999999999987743 223446899999999999999999999999999999998763 4667888999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc-
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ- 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~- 235 (630)
.|.+++|+|++.+|++++ +.|++||..++. +..++.+|...|++++|+|++++|++++ .|++|++|+.......
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~~~ 230 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGNEQ 230 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTCTT
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCCCc
Confidence 999999999999999998 899999998875 4567889999999999999999999988 6999999997433211
Q ss_pred ---------cceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 236 ---------SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 236 ---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
...++..+. .+...+..+.|+ |++..|++++.|+.|++|+.......... . ...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~l~s~~~d~~i~vw~~~~~~~~~~~--~-~~~-------- 294 (345)
T 3fm0_A 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWC-----QLTGALATACGDDAIRVFQEDPNSDPQQP--T-FSL-------- 294 (345)
T ss_dssp CCCCC---CEEEEEEEECSSCSSCEEEEEEC-----TTTCCEEEEETTSCEEEEEECTTSCTTSC--C-EEE--------
T ss_pred cceeeccCCccceeEEecCCCCCcEEEEEEe-----cCCCEEEEEeCCCeEEEEEeCCCCCccee--e-EEE--------
Confidence 011222222 233445556666 89999999999999999997654321100 0 000
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc-eeeccccceeccccceecc
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~~ 381 (630)
......+|...|.+++|+|++. +| +|||.|+++++|++..
T Consensus 295 -----------------------------------~~~~~~~h~~~V~~v~~~p~~~~~l-aS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 295 -----------------------------------TAHLHQAHSQDVNCVAWNPKEPGLL-ASCSDDGEVAFWKYQR 335 (345)
T ss_dssp -----------------------------------EEEETTSSSSCEEEEEECSSSTTEE-EEEETTSCEEEEEECC
T ss_pred -----------------------------------EeeecccccCcEeEeEEeCCCceEE-EEcCCCCcEEEEEecC
Confidence 0001237888999999999985 77 9999999999999854
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=303.36 Aligned_cols=281 Identities=22% Similarity=0.321 Sum_probs=234.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|+||++.+++....+.+|... +.++.|.+.
T Consensus 23 ~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~------------------v~~~~~~~~------ 76 (312)
T 4ery_A 23 TKAV--SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------------------ISDVAWSSD------ 76 (312)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------------EEEEEECTT------
T ss_pred CCcE--EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc------------------eEEEEEcCC------
Confidence 4578 55599999999999999999999999999988888765544 445555553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.+|.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++++..+..|..+|
T Consensus 77 ---~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 77 ---SNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred ---CCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 788999999999999999999887666 4799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
.+++|+|++.++++++ |.|++||+.+++.+..+. .+..++..++|+|++++|++++ .|+.|++||+.+++.. .
T Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~---~ 228 (312)
T 4ery_A 153 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCL---K 228 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEE---E
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE---E
Confidence 9999999999999988 899999999998877764 4567899999999999999988 6999999999987633 1
Q ss_pred eeeecCCc--eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 240 VLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 240 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
.+. .+.. ..+...+.. +++.+|++|+.||.|++||+.+++.+.
T Consensus 229 ~~~-~~~~~~~~~~~~~~~-----~~~~~l~sg~~dg~i~vwd~~~~~~~~----------------------------- 273 (312)
T 4ery_A 229 TYT-GHKNEKYCIFANFSV-----TGGKWIVSGSEDNLVYIWNLQTKEIVQ----------------------------- 273 (312)
T ss_dssp EEC-SSCCSSSCCCEEEEC-----SSSCEEEECCTTSCEEEEETTTCCEEE-----------------------------
T ss_pred EEE-ecCCceEEEEEEEEe-----CCCcEEEEECCCCEEEEEECCCchhhh-----------------------------
Confidence 111 2222 222333333 678999999999999999986553211
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeecccc--ceecccccee
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV 379 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~ 379 (630)
.+.+|...|.+++|+|++.++ ++++ .|+++++|+.
T Consensus 274 --------------------------~~~~h~~~v~~~~~~p~~~~l-~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 --------------------------KLQGHTDVVISTACHPTENII-ASAALENDKTIKLWKS 310 (312)
T ss_dssp --------------------------EECCCSSCEEEEEECSSSSEE-EEEECTTTCCEEEEEC
T ss_pred --------------------------hhhccCCcEEEEeecCcCCce-EEEEccCCccEEEecC
Confidence 233788889999999999999 7775 6999999975
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=304.54 Aligned_cols=286 Identities=15% Similarity=0.142 Sum_probs=230.2
Q ss_pred CcccceeEeEECCCC-CEEEEeeCCCcEEEEECCC-----CcEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...+..+.|+++
T Consensus 17 ~~~V--~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d------------------ 76 (319)
T 3frx_A 17 NGWV--TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD------------------ 76 (319)
T ss_dssp SSCE--EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT------------------
T ss_pred cceE--EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC------------------
Confidence 4678 555999965 8999999999999999864 2345566666555544444443
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|++|++||++ ++++..+.
T Consensus 77 ---------g~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~ 145 (319)
T 3frx_A 77 ---------GAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL 145 (319)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC
T ss_pred ---------CCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Confidence 788999999999999999999988666 4799999999999999999999999999999986 66788889
Q ss_pred cCCCCeEEEEEccC------CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 157 ASTKGISCMAVSSD------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 157 ~~~~~v~~l~~~p~------~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
+|...|.+++|+|. +..+++++ +.|++||+.+++....+.+|...|.+++|+|++++|++++ .|+.|++||
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd 224 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLWN 224 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEE
T ss_pred ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEE
Confidence 99999999999985 44788887 8999999999999999999999999999999999999988 699999999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
+.+++.. ..+.++. .+..+.|+ |++.+|++++.+ .+++|++..+..+....+ ...
T Consensus 225 ~~~~~~~-----~~~~~~~-~v~~~~~s-----p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-------------~~~ 279 (319)
T 3frx_A 225 LAAKKAM-----YTLSAQD-EVFSLAFS-----PNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-------------EFA 279 (319)
T ss_dssp TTTTEEE-----EEEECCS-CEEEEEEC-----SSSSEEEEEETT-EEEEEEETTEEEEEEECC-------------CCT
T ss_pred CCCCcEE-----EEecCCC-cEEEEEEc-----CCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-------------ccc
Confidence 9987633 3333433 35566776 999999888764 599999876544322110 000
Q ss_pred chhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 309 ~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+ ....|...+.+++|+|||++| ++|+.|+.+++|++.
T Consensus 280 ------------~----------------------~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 280 ------------G----------------------YSKAAEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM 316 (319)
T ss_dssp ------------T----------------------CCGGGCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred ------------c----------------------cccCcCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence 0 001455678899999999999 999999999999985
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.05 Aligned_cols=311 Identities=20% Similarity=0.264 Sum_probs=256.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|+|++|++++.|+.|++|+. +++....+.+|...+..+.|+|+
T Consensus 262 ~~~v--~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~------------------------ 314 (577)
T 2ymu_A 262 SSSV--NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------ 314 (577)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC------------------------
Confidence 3567 45599999999999999999999996 56777777766655554444444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++++.+|.|++||....... .+ .+|...|.+++|+|+|+++++++.|+.|++||. +++.+..+..|...|
T Consensus 315 ---~~~l~t~~~d~~i~~w~~~~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v 388 (577)
T 2ymu_A 315 ---GQTIASASDDKTVKLWNRNGQHLQ-TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 388 (577)
T ss_dssp ---SSEEEEEETTSCEEEEETTSCEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEeCCCCeeE-EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence 778999999999999998766543 33 479999999999999999999999999999995 678889999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.+++|+|++++|++++ +.|++||. +++.+..+.+|...|++++|+|++++|++++ .|+.|++|+..... .
T Consensus 389 ~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~~------~ 460 (577)
T 2ymu_A 389 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQL------L 460 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSCE------E
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCCE------E
Confidence 9999999999999987 89999995 6778889999999999999999999999988 69999999975432 2
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc---eeEEeeccCCCcccccchhhhhhhc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
..+..+...+..++|+ |++.+|++++.|+.|++||. +++.++.... ....+. |+|+++ +++++
T Consensus 461 ~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~----~s~dg~----~l~s~ 526 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA----FSPDGQ----TIASA 526 (577)
T ss_dssp EEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE----ECTTSS----CEEEE
T ss_pred EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE----EcCCCC----EEEEE
Confidence 2333344456677777 99999999999999999995 5555544332 223333 788887 89999
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
+.|+.+++|+ .....+..+.+|.+.|.+++|+|||++| +|++.|+++++|+
T Consensus 527 ~~dg~v~lwd---------~~~~~~~~~~~h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 527 SDDKTVKLWN---------RNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN 577 (577)
T ss_dssp ETTSEEEEEC---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred ECcCEEEEEe---------CCCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence 9988777654 1245677888999999999999999999 9999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=314.49 Aligned_cols=284 Identities=12% Similarity=0.106 Sum_probs=215.2
Q ss_pred CcccceeEeEECCCCCEEEEeeC------CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSG------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
...| .+++|||||++||+|+. |+.|++|+..++.....+... ..+| ...+++++|.+.
T Consensus 42 ~~~V--~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-------------~~~~-~~~V~~~~~s~d 105 (357)
T 4g56_B 42 EVQI--GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-------------GVQT-EAGVTDVAWVSE 105 (357)
T ss_dssp CSEE--EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-------------EEEC-SSCEEEEEEETT
T ss_pred cCCE--EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-------------cCCC-CCCEEEEEEcCC
Confidence 3467 45599999999999997 778999988776543222100 0022 235778888874
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEE---ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~---~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
..+++++.+|.|+|||+.+++.... ...+|...|++++|+|+|++|++|+.|++|++||+.+++++.
T Consensus 106 ----------~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 106 ----------KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK 175 (357)
T ss_dssp ----------TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ----------CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 2467889999999999998865322 224799999999999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEe--ecCCCCeEEEEEeeCCc-EEEEEeeCCCeEEEE
Q 006808 154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGK-YVLSSAVGERYIALW 227 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~-~l~~~~~~d~~i~vw 227 (630)
.+.+|...|.+++|+|++. ++++++ +.|++||+++++....+ ..|...+++++|+|++. +|++++ .|+.|++|
T Consensus 176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~w 254 (357)
T 4g56_B 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSLV 254 (357)
T ss_dssp EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEEE
T ss_pred EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeEE
Confidence 9999999999999999875 666666 89999999998876654 35677899999999865 555555 79999999
Q ss_pred EcCCCccccceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCccc
Q 006808 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKS 306 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (630)
|+++++.. ..+..+...+.++.|+ |++ .+|++|+.||.|+|||+.+++.+.
T Consensus 255 d~~~~~~~-----~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~~~------------------ 306 (357)
T 4g56_B 255 NIKNPDSA-----QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEVFR------------------ 306 (357)
T ss_dssp ESSCGGGC-----EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEEEE------------------
T ss_pred ECCCCcEe-----EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcEeE------------------
Confidence 99987643 3344444456667776 776 679999999999999986653211
Q ss_pred ccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC-Ccceeeccccceeccccceec
Q 006808 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 307 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~~~ 380 (630)
..+|.+.|.+++|+| |+.+| +|+|.|+++++|++.
T Consensus 307 --------------------------------------~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 307 --------------------------------------DLSHRDFVTGVAWSPLDHSKF-TTVGWDHKVLHHHLP 342 (357)
T ss_dssp --------------------------------------ECCCSSCEEEEEECSSSTTEE-EEEETTSCEEEEECC
T ss_pred --------------------------------------ECCCCCCEEEEEEeCCCCCEE-EEEcCCCeEEEEECC
Confidence 115777899999998 78998 999999999999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=310.80 Aligned_cols=302 Identities=16% Similarity=0.226 Sum_probs=231.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|||++||+|+ +++++||++.++..+..+..+.....................+.+++|.+.
T Consensus 64 ~~~V--~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d------ 134 (393)
T 1erj_A 64 TSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD------ 134 (393)
T ss_dssp SSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT------
T ss_pred CCEE--EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC------
Confidence 4577 5669999999999987 689999999999998887655322110000000000111234778888775
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++.+|++++.|++|++||++++++...+. +...+
T Consensus 135 ---g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v 209 (393)
T 1erj_A 135 ---GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGV 209 (393)
T ss_dssp ---SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred ---CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCc
Confidence 778999999999999999999887555 5899999999999999999999999999999999999888877 55679
Q ss_pred EEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEe-------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 163 SCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 163 ~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.+++|+| ++.+|++++ +.|++||+.++..+..+ .+|...|.+++|+|++++|++++ .|+.|++||+...
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~~~ 288 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECCCC
Confidence 9999999 899999998 89999999999887766 57999999999999999999988 6999999999765
Q ss_pred ccc-------cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 233 KKQ-------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 233 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
... ...+...+..+...+..++++ |++.+|++|+.||.|++||..+++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~~~----------------- 346 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL----------------- 346 (393)
T ss_dssp ------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE-----------------
T ss_pred CCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeEEE-----------------
Confidence 321 011233333334445566666 899999999999999999986654321
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC------Ccceeeccccceecccccee
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ------DGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+.+|...|.+++|++ ++.+| +|||.|+++++|++
T Consensus 347 --------------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l-~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 347 --------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKY 387 (393)
T ss_dssp --------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEEE
T ss_pred --------------------------------------EECCCCCCEEEEEecCCcCcCCCCCEE-EEECCCCcEEECcc
Confidence 2336777788888765 78888 99999999999998
Q ss_pred c
Q 006808 380 Q 380 (630)
Q Consensus 380 ~ 380 (630)
.
T Consensus 388 ~ 388 (393)
T 1erj_A 388 K 388 (393)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=297.40 Aligned_cols=292 Identities=14% Similarity=0.120 Sum_probs=222.7
Q ss_pred CcccceeEeEE-----CC-CCCEEEEeeCCCcEEEEECCCC-------cEEEEeccccccccccccccccccccccccee
Q 006808 3 SSNIRDILTSF-----SP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYT 69 (630)
Q Consensus 3 s~~V~~~~~~f-----s~-dg~~las~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 69 (630)
.++| .+++| ++ ++++||+|+.|++|+|||+.++ .....+.+|... +.
T Consensus 21 ~~~V--~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~------------------V~ 80 (343)
T 2xzm_R 21 SDWV--TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF------------------VS 80 (343)
T ss_dssp SSCE--EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSC------------------EE
T ss_pred hhhh--hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCc------------------eE
Confidence 4678 45588 66 9999999999999999998753 334455544443 45
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
+++|.+. +.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|++|++||+..
T Consensus 81 ~~~~~~~---------~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~- 149 (343)
T 2xzm_R 81 DLALSQE---------NCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG- 149 (343)
T ss_dssp EEEECSS---------TTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-
T ss_pred EEEECCC---------CCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-
Confidence 5555543 778999999999999999999887666 47999999999999999999999999999999974
Q ss_pred ceeEEee---cCCCCeEEEEEccCC----------CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEE
Q 006808 150 SLLGKFR---ASTKGISCMAVSSDG----------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 150 ~~~~~~~---~~~~~v~~l~~~p~~----------~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
.....+. .|...|.+++|+|++ .++++++ +.|++|| .+++....+.+|...|.+++|+|+|++|
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYI 228 (343)
T ss_dssp CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEE
Confidence 3333333 677899999999987 6888887 8999999 4566777889999999999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
++++ .|+.|++||+...... ...+.+.. .+..+.|+ |++.++++ +.|+.|++|++.++......
T Consensus 229 ~sgs-~dg~v~iwd~~~~~~~----~~~~~~~~-~v~~v~~s-----p~~~~la~-~~d~~v~iw~~~~~~~~~~~---- 292 (343)
T 2xzm_R 229 ATGG-KDKKLLIWDILNLTYP----QREFDAGS-TINQIAFN-----PKLQWVAV-GTDQGVKIFNLMTQSKAPVC---- 292 (343)
T ss_dssp EEEE-TTCEEEEEESSCCSSC----SEEEECSS-CEEEEEEC-----SSSCEEEE-EESSCEEEEESSSCCSCSEE----
T ss_pred EEEc-CCCeEEEEECCCCccc----ceeecCCC-cEEEEEEC-----CCCCEEEE-ECCCCEEEEEeCCCCCCceE----
Confidence 9988 6999999999544322 11222222 35667776 88887764 56788999999776543210
Q ss_pred EEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecc
Q 006808 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (630)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (630)
. +... .+. ......+|...|.+++|+|+|.+| ++|+.|+++
T Consensus 293 -~------~~~~------~~~-------------------------~~~~~~~~~~~v~~~~~sp~g~~l-~sg~~Dg~v 333 (343)
T 2xzm_R 293 -T------IEAE------PIT-------------------------KAEGQKGKNPQCTSLAWNALGKKL-FAGFTDGVI 333 (343)
T ss_dssp -E------CCCC------SGG-------------------------GBTTBCCSCCCEEEEEECSSSCCE-EEEETTSEE
T ss_pred -E------eecC------cch-------------------------hhhhhcCCCCceEEEEECCCCCeE-EEecCCceE
Confidence 0 0000 000 000122677889999999999999 999999999
Q ss_pred ccceecc
Q 006808 375 RGRYVQN 381 (630)
Q Consensus 375 ~~w~~~~ 381 (630)
++|++..
T Consensus 334 ~~w~~~~ 340 (343)
T 2xzm_R 334 RTFSFET 340 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999853
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=310.97 Aligned_cols=335 Identities=15% Similarity=0.244 Sum_probs=253.2
Q ss_pred cccceeEeEECCCCC-EEEEeeCCCcEEEEEC----CCCc------EEEEecccccccccccccccccccccccceeeEE
Q 006808 4 SNIRDILTSFSPALD-YFAICSGDARIKIWDT----LKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMK 72 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~----~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 72 (630)
++| .+++|+|+|+ +||+|+.||.|+||++ .+++ ....+........ ..++....+++++
T Consensus 46 ~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 46 DNI--VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA--------SSGKTTNQVTCLA 115 (425)
T ss_dssp SCC--SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--------------CBCEEEEE
T ss_pred Cce--EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc--------cccCCCCceEEEE
Confidence 678 5569999999 9999999999999999 8887 3433332100000 0011244788888
Q ss_pred ecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee
Q 006808 73 WLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 73 w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
|.+. +.+|++|+.+|.|++|| .++..+..+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 116 ~s~~---------~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 116 WSHD---------GNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp ECTT---------SSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EcCC---------CCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 8874 77899999999999999 556665455 479999999999999999999999999999999999999
Q ss_pred EEeecCCCC---------------eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 153 GKFRASTKG---------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 153 ~~~~~~~~~---------------v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
..+..+... +.+++|+|++.+++.+. |.|++||+.+++.+..+.+|...|.+++|+|++++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 998877766 99999999876444444 89999999999999999999999999999999999999
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc---e
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---T 293 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~ 293 (630)
++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++ ++++++.||.|++||+.+++.+..... .
T Consensus 265 ~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 265 AS-DDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EE-TTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred Ec-CCCEEEEEECCCCccc-----eEecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence 88 6999999999887633 2333334445566666 888 999999999999999998877655433 2
Q ss_pred eEEeeccCCCcccccchhhhhhhccccccccCCceeEEE-----EEc-------CccCceeeEEeccCC--CcEEEeecC
Q 006808 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV-----AYG-------LLLKPSFQKILVNSG--EDINLNCSQ 359 (630)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-----~~g-------~~~~~~~~~~~~h~~--~v~~~~~s~ 359 (630)
...+. ++|+++ .+++++.++.+++|+..-.. .++ ....+.+..+.+|.. .|.+++|+|
T Consensus 333 i~~~~----~s~~~~----~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 404 (425)
T 1r5m_A 333 IFAGR----ISQDGQ----KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC 404 (425)
T ss_dssp EEEEE----ECTTSS----EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred EEEEE----EcCCCC----EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence 22222 677776 89999988876665421000 000 001125677888976 999999999
Q ss_pred Ccceeeccccceeccccceec
Q 006808 360 DGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 360 dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+|.+| ++++.|+.+++|++.
T Consensus 405 ~~~~l-~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 405 AGNKI-SVAYSLQEGSVVAIP 424 (425)
T ss_dssp TSSEE-EEEESSSCCEEEECC
T ss_pred CCceE-EEEecCceEEEEeec
Confidence 99999 999999999999874
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=295.00 Aligned_cols=287 Identities=14% Similarity=0.158 Sum_probs=211.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEe-cccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| .+++|+|+ +||+|+.|++|++||+.++. ....+ .+ +| ...+.+++|.|.
T Consensus 14 ~~~v--~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~----------------~h-~~~v~~v~~sp~--- 69 (330)
T 2hes_X 14 KEKI--WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDET----------------AH-KKAIRSVAWRPH--- 69 (330)
T ss_dssp SSCE--EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTT----------------CC-CSCEEEEEECTT---
T ss_pred CCce--eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecC----------------Cc-cCCEEEEEECCC---
Confidence 4678 55599988 99999999999999998753 34434 21 12 224666777664
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCC-------eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC----
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---- 148 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~-------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~---- 148 (630)
+.+|++|+.|+.|++|++... ... ..+.+|...|.+++|+|+|++|++|+.|++|++||+..
T Consensus 70 ------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 70 ------TSLLAAGSFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp ------SSEEEEEETTSCEEEEEC-------CCCEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred ------CCEEEEEeCCCcEEEEEcccCcCccccceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 778999999999999998532 333 33468999999999999999999999999999999943
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC--ceeeEeecCCCCeEEEEEeeC--CcEEEEEeeCCC
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGER 222 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~--~~~l~~~~~~d~ 222 (630)
.+++..+.+|...|.+++|+|++.+|++++ ++|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ .|+
T Consensus 143 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~D~ 221 (330)
T 2hes_X 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-DDS 221 (330)
T ss_dssp CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-TTS
T ss_pred eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-CCC
Confidence 256778899999999999999999999998 89999998776 578889999999999999998 66788877 799
Q ss_pred eEEEEEcCCCccc---cceeeeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee
Q 006808 223 YIALWRTDGVKKQ---SASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298 (630)
Q Consensus 223 ~i~vwd~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 298 (630)
+|++|++..+... ...+...+.. +...+..+.|+ ++ .+|++++.||.|+||+..++.. ....
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~-~~l~s~~~dg~v~iw~~~~~~~--------~~~~ 287 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-----FN-GLIASVGADGVLAVYEEVDGEW--------KVFA 287 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-----TT-SCEEEEETTSCEEEEEEETTEE--------EEEE
T ss_pred eEEEEEecCCCccccceeEEeeecccccccceEEEEEc-----CC-CEEEEEeCCCEEEEEEcCCCce--------EEEe
Confidence 9999998764211 0012222221 33445566665 55 4899999999999999743311 0000
Q ss_pred ccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCC-CcEEEeecC--Ccceeeccccceeccc
Q 006808 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQ--DGVLLPMSQSLLKSKR 375 (630)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~~~~s~--dg~~l~~s~s~d~~~~ 375 (630)
....+|.. .|.+++|+| ++.+| +|||.|++++
T Consensus 288 --------------------------------------------~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg~v~ 322 (330)
T 2hes_X 288 --------------------------------------------KRALCHGVYEINVVKWLELNGKTIL-ATGGDDGIVN 322 (330)
T ss_dssp --------------------------------------------EESCTTTTSCEEEEEEC-----CCE-EEEETTSEEE
T ss_pred --------------------------------------------ccccccccceEEEEEEecCCCceEE-EEecCCCcEE
Confidence 00125655 789999999 78888 9999999999
Q ss_pred cceec
Q 006808 376 GRYVQ 380 (630)
Q Consensus 376 ~w~~~ 380 (630)
+|++.
T Consensus 323 ~W~~~ 327 (330)
T 2hes_X 323 FWSLE 327 (330)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 99975
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=317.20 Aligned_cols=313 Identities=20% Similarity=0.246 Sum_probs=252.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++|++++.|+.|++||. +++.+..+.+|...+..+.|+|+
T Consensus 221 ~~~v--~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d------------------------ 273 (577)
T 2ymu_A 221 SSSV--RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPD------------------------ 273 (577)
T ss_dssp SSCE--EEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred CCCE--EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCC------------------------
Confidence 4567 45599999999999999999999996 57777777766555544444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++++.++.|++|+... +....+ .+|...|.+++|+|+++.|++++.|+.|++||+. ++.+..+..|...+
T Consensus 274 ---~~~l~~~~~d~~i~~w~~~~-~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v 347 (577)
T 2ymu_A 274 ---GQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSV 347 (577)
T ss_dssp ---SSEEEEEETTSCEEEEETTS-CEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred ---CCEEEEEeCCCEEEEEeCCC-cEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCE
Confidence 77899999999999999754 444343 5899999999999999999999999999999975 55667788899999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.+++|+|++++|++++ +.|++||. +++.+..+.+|...|++++|+|++++|++++ .|+.|++|+..... .
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~~------~ 419 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQL------L 419 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCCE------E
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCCE------E
Confidence 9999999999999988 89999995 6778889999999999999999999999988 69999999964322 2
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc---cCceeEEeeccCCCcccccchhhhhhhc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN---TKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
..+..+...+..+.|+ |++.+|++++.|+.|++||.. ++.+.. +......+. |+|+++ .++++
T Consensus 420 ~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~----~spd~~----~las~ 485 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA----FSPDGQ----TIASA 485 (577)
T ss_dssp EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEE----ECTTSC----EEEEE
T ss_pred EEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEE----EcCCCC----EEEEE
Confidence 2333334445566776 999999999999999999964 444433 222333333 788887 89999
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+.|+.+++|+ .....+..+.+|...|.+++|+|||++| ++++.|+.+++|+..
T Consensus 486 ~~d~~i~iw~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 486 SDDKTVKLWN---------RNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN 538 (577)
T ss_dssp ETTSEEEEEE---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT
T ss_pred eCCCEEEEEc---------CCCCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEEEEeCC
Confidence 9988766543 2245567888999999999999999999 999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=288.59 Aligned_cols=238 Identities=21% Similarity=0.291 Sum_probs=208.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+| .+++|+|++.++++|+.|++|++||+.+++.+..+..+...+..+.|+|+
T Consensus 81 ~~v--~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd------------------------- 133 (321)
T 3ow8_A 81 LGV--VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD------------------------- 133 (321)
T ss_dssp SCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT-------------------------
T ss_pred CCE--EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC-------------------------
Confidence 467 56699999999999999999999999999999888765554444444443
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.+|++|+.+|.|++|++.+++....+. .|...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|..+|.
T Consensus 134 --g~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 210 (321)
T 3ow8_A 134 --SQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210 (321)
T ss_dssp --SSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCC
T ss_pred --CCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCcee
Confidence 7889999999999999999998876654 6888999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+++|+|++++|++++ +.|++||++++.....+.+|...|.+++|+|++++|++++ .|+.|++||+.+++. +.
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~~-----~~ 284 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRTC-----VH 284 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEE-----EE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCEE-----EE
Confidence 999999999999998 8999999999999999999999999999999999999988 699999999988763 33
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.+..+...+..+.|+ |++.+|++++.||.|+|||..
T Consensus 285 ~~~~h~~~v~~v~~s-----~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 285 TFFDHQDQVWGVKYN-----GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECCCSSCEEEEEEC-----TTSSEEEEEETTCCEEEEECC
T ss_pred EEcCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEeCC
Confidence 444444455666776 999999999999999999963
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=291.63 Aligned_cols=318 Identities=11% Similarity=0.072 Sum_probs=247.0
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+.++| .+++|+|||++++++..++.+.+|............+|... ++++.|.+.
T Consensus 8 ~~~~v--~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~----- 62 (337)
T 1gxr_A 8 GSKPA--YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEV------------------VCAVTISNP----- 62 (337)
T ss_dssp EEEEC--CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSC------------------CCEEEECSS-----
T ss_pred cCCce--eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCc------------------eEEEEEecC-----
Confidence 35678 55599999999999888777777765544443333344443 455555543
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEcc----CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEe
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKF 155 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~----~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~ 155 (630)
+.++++++ +|.|++|++.++.....+. .+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+
T Consensus 63 ----~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 137 (337)
T 1gxr_A 63 ----TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp ----SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred ----CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence 77788888 9999999998775322221 2688999999999999999999999999999999887 56678
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..|...|.+++|+|+++++++++ |.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++||+.+++
T Consensus 138 ~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGR 216 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTE
T ss_pred ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCc
Confidence 88889999999999999999987 8999999999999999999999999999999999999988 69999999999876
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc--cCceeEEeeccCCCcccccchh
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--TKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
.. ....+... +..+.++ |++.+|++++.+|.|++||+.+++.... +......+. ++++++
T Consensus 217 ~~-----~~~~~~~~-v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~--- 278 (337)
T 1gxr_A 217 QL-----QQHDFTSQ-IFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK----FAYCGK--- 278 (337)
T ss_dssp EE-----EEEECSSC-EEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEE----ECTTSS---
T ss_pred eE-----eeecCCCc-eEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEE----ECCCCC---
Confidence 43 23334333 4556666 8999999999999999999988765332 222222333 677776
Q ss_pred hhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+++++.++.+++++. ...... ....|...+.+++|+|+|.+| ++++.|+.+++|++
T Consensus 279 -~l~~~~~dg~i~~~~~--------~~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 279 -WFVSTGKDNLLNAWRT--------PYGASI-FQSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp -EEEEEETTSEEEEEET--------TTCCEE-EEEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred -EEEEecCCCcEEEEEC--------CCCeEE-EEecCCCcEEEEEECCCCCEE-EEecCCCeEEEEEE
Confidence 8889988876655431 111111 234688899999999999999 99999999999986
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-36 Score=312.00 Aligned_cols=332 Identities=11% Similarity=0.100 Sum_probs=246.8
Q ss_pred ccceeEeEECCCCC-EEEEe----------eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEe
Q 006808 5 NIRDILTSFSPALD-YFAIC----------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 5 ~V~~~~~~fs~dg~-~las~----------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
+| .+++|+|+|+ +||+| +.|+.|+|||+.++.....+. ...| ...+.+++|
T Consensus 14 ~v--~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---------------~~~~-~~~v~~~~~ 75 (416)
T 2pm9_A 14 RT--ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---------------SLQV-DSKFNDLDW 75 (416)
T ss_dssp ES--CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---------------CCCC-SSCEEEEEE
T ss_pred hc--ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---------------EEec-CCceEEEEE
Confidence 56 4559999997 99999 889999999998875321110 0012 335778888
Q ss_pred cccccccccccCCcEEEEEeCCCeEEEEEccC----CeeeEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCC
Q 006808 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~----~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~ 148 (630)
.+. +.+|++|+.+|.|++|++.+ ...+ ....+|...|.+++|+|+ +++|++++.|+.|++||+.+
T Consensus 76 s~~---------~~~l~~~~~dg~v~vw~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 145 (416)
T 2pm9_A 76 SHN---------NKIIAGALDNGSLELYSTNEANNAINSM-ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145 (416)
T ss_dssp CSS---------SSCEEEEESSSCEEEECCSSTTSCCCEE-EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred CCC---------CCeEEEEccCCeEEEeecccccccccch-hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence 664 67899999999999999988 2344 444579999999999998 88999999999999999998
Q ss_pred Cc------eeEE---eecCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecC------CCCeEEEEEeeC
Q 006808 149 GS------LLGK---FRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDN 210 (630)
Q Consensus 149 ~~------~~~~---~~~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~ 210 (630)
++ .... +..|...|.+++|+|+ +.++++++ +.|++||+++++.+..+..| ...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225 (416)
T ss_dssp TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence 86 3322 3568889999999998 78888887 89999999999998888766 789999999999
Q ss_pred C-cEEEEEeeCCC---eEEEEEcCCCccccceeeeeec-CCceeeeeEEecCCccCC-CCCEEEEEecCCcEEEEEcCCc
Q 006808 211 G-KYVLSSAVGER---YIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 211 ~-~~l~~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+ .++++++ .|+ .|++||+++.... ...+. .+...+..+.|+ | ++.+|++++.||.|++||+.++
T Consensus 226 ~~~~l~~~~-~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 226 NSTRVATAT-GSDNDPSILIWDLRNANTP----LQTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp CTTEEEEEE-CCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECSSSC
T ss_pred CCCEEEEEE-CCCCCceEEEEeCCCCCCC----cEEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeCCCC
Confidence 8 4666666 688 9999999986422 22333 233445566665 7 8999999999999999999998
Q ss_pred ccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCc---------------------------
Q 006808 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL--------------------------- 337 (630)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~--------------------------- 337 (630)
+.+.........+.+ ..++|++. ..+++++.|+.+++|+..-.......
T Consensus 296 ~~~~~~~~~~~~v~~-~~~s~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (416)
T 2pm9_A 296 EQLSQFPARGNWCFK-TKFAPEAP---DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP 371 (416)
T ss_dssp CEEEEEECSSSCCCC-EEECTTCT---TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred ccceeecCCCCceEE-EEECCCCC---CEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence 876654433222221 12677762 18899999887776543211000000
Q ss_pred -cCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 338 -LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 338 -~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
...+ .....|...+.+++|+|||++| ++++.|+++++|++.
T Consensus 372 ~~~~~-~~~~~~~~~~~~~~~s~dg~~l-a~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 372 SVFHL-QAPTWYGEPSPAAHWAFGGKLV-QITPDGKGVSITNPK 413 (416)
T ss_dssp CSSCC-CCCSTTCCCSCCCEEETTTEEE-CBCTTSSCBCCBCCC
T ss_pred ccccc-cCCccccCCccceEEeeCCeEE-EEeCCCCeEEEEEec
Confidence 0001 1122367788899999999999 999999999999984
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=307.52 Aligned_cols=319 Identities=14% Similarity=0.145 Sum_probs=242.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++|+|+|++|++|+.||.|++||+.++.....+. .+ .+.++.+.+++ +.+|
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-----------------~~---~~~~~~~~~~~--------~~~l 112 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-----------------RA---DYTAVDTAKLQ--------MRRF 112 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-----------------SC---CEEEEEEECSS--------SCEE
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-----------------cC---CceEEEEEecC--------CCEE
Confidence 34999999999999999999999998766543322 11 23344343333 7789
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
++|+.+|.|++||+.++.....+ .+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred EEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 99999999999999988887444 58999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeC--CeEEEEECCCCceeeEeec---CCCCeEEEE---------------------EeeCCcEEEEEeeCCCe
Q 006808 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMT---------------------FSDNGKYVLSSAVGERY 223 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lwd~~~~~~~~~~~~---h~~~v~~l~---------------------~sp~~~~l~~~~~~d~~ 223 (630)
++.+|++++ +.|++||+++++.+..+.. |...+.+++ |+|++++|++++ .|+.
T Consensus 192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~ 270 (420)
T 3vl1_A 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGV 270 (420)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSC
T ss_pred CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCe
Confidence 999999988 8999999999998888874 344455555 467888998887 6999
Q ss_pred EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCccc-ccccC---ceeEEee
Q 006808 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEE-LRNTK---ATKILSS 298 (630)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~---~~~~~~~ 298 (630)
|++||+++++.. .... ..+...+..+.|+ |++. +|++|+.||.|++||+.+++. +.... .......
T Consensus 271 i~i~d~~~~~~~---~~~~-~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 271 ITVHNVFSKEQT---IQLP-SKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV 341 (420)
T ss_dssp EEEEETTTCCEE---EEEC-CTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred EEEEECCCCcee---EEcc-cccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence 999999887643 2222 2334455666676 8888 999999999999999988754 33221 1111111
Q ss_pred ccCCCcccccchhhhhhhccccccccCCceeEEEEEcCc------cCceeeEEeccCCCcEEEeecCCcc---eeecccc
Q 006808 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGV---LLPMSQS 369 (630)
Q Consensus 299 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s 369 (630)
+.++++ .+++++.|+.+++|+ ..... ....-..+..|...|.+++|+|+|. .+ ++.+
T Consensus 342 ----~~~~~~----~l~s~~~d~~v~iw~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g 407 (420)
T 3vl1_A 342 ----YFAAGA----LFVSSGFDTSIKLDI-----ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVG 407 (420)
T ss_dssp ----EEETTE----EEEEETTTEEEEEEE-----ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE-EEEE
T ss_pred ----EeCCCC----EEEEecCCccEEEEe-----ccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE-EEEc
Confidence 233444 889999988766654 22110 0112223557899999999999999 56 4444
Q ss_pred ceeccccceecc
Q 006808 370 LLKSKRGRYVQN 381 (630)
Q Consensus 370 ~d~~~~~w~~~~ 381 (630)
.++.+++|++++
T Consensus 408 ~~g~~~~~~~~~ 419 (420)
T 3vl1_A 408 KNNFCALYNLSN 419 (420)
T ss_dssp TTTEEEEEESCC
T ss_pred CCceEEEEeccC
Confidence 588999998864
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=297.84 Aligned_cols=238 Identities=18% Similarity=0.265 Sum_probs=208.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.+++++..+.+|...+. ++.|.|.
T Consensus 150 ~~~V--~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~------------------~v~~~p~------ 203 (410)
T 1vyh_C 150 TDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS------------------SVSIMPN------ 203 (410)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE------------------EEEECSS------
T ss_pred CCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE------------------EEEEeCC------
Confidence 4678 5569999999999999999999999999999888876655444 4555443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.||.|++||+.++.++..+ .+|...|.++.|+|+|.+|++|+.|++|++||+.++++...+..|...|
T Consensus 204 ---~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v 279 (410)
T 1vyh_C 204 ---GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279 (410)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE
Confidence 778999999999999999999988666 4799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccC--------------------CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 163 SCMAVSSD--------------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 163 ~~l~~~p~--------------------~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
.+++|+|+ |.+|++|+ +.|++||+.++.++..+.+|...|++++|+|++++|++++ .
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~ 358 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-D 358 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-T
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-C
Confidence 99999996 66889888 8999999999999999999999999999999999999988 6
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|+.|++||+.+++.. ..+..+...+.++.|+ |++.+|++|+.||.|+||+.
T Consensus 359 D~~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~-----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 359 DKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp TTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC-
T ss_pred CCeEEEEECCCCceE-----EEEcCCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEeC
Confidence 999999999877633 3334444456677776 99999999999999999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=287.18 Aligned_cols=294 Identities=14% Similarity=0.146 Sum_probs=229.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+ .++.|.+.
T Consensus 32 ~~~v--~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v------------------~~~~~~~~------ 85 (369)
T 3zwl_B 32 ERPL--TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI------------------WSIDVDCF------ 85 (369)
T ss_dssp SSCE--EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCE------------------EEEEECTT------
T ss_pred eceE--EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcE------------------EEEEEcCC------
Confidence 4678 556999999999999999999999999999999887665544 45555543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCc-------
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS------- 150 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~------- 150 (630)
+.+|++++.+|.|++||+.+++.+..+. |...|.+++|+|+++++++++.+ +.|++||+..+.
T Consensus 86 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 160 (369)
T 3zwl_B 86 ---TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK 160 (369)
T ss_dssp ---SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc
Confidence 7789999999999999999999887764 88899999999999999999998 999999987653
Q ss_pred ----eeEEeecCCC--CeEEEEEccCCCEEEEeC--CeEEEEECCC-CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 151 ----LLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 151 ----~~~~~~~~~~--~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
....+..+.. .+.+++|+|++++|++++ |.|++||+.+ ++.+..+..|...|.+++|+|++++|++++ .|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 239 (369)
T 3zwl_B 161 VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-RD 239 (369)
T ss_dssp ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-CC
Confidence 3444555666 899999999999999987 8999999998 788888999999999999999999999988 69
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccC
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (630)
+.|++||+.+++.. ..+.+.. .+..+.++ |++.++++++.++...+|........ ..
T Consensus 240 ~~i~v~d~~~~~~~-----~~~~~~~-~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~------- 296 (369)
T 3zwl_B 240 TNSFLVDVSTLQVL-----KKYETDC-PLNTAVIT-----PLKEFIILGGGQEAKDVTTTSANEGK-----FE------- 296 (369)
T ss_dssp SEEEEEETTTCCEE-----EEEECSS-CEEEEEEC-----SSSSEEEEEECCC------------------CE-------
T ss_pred ceEEEEECCCCcee-----eeecCCC-CceeEEec-----CCCceEEEeecCCCceEEEEecCCCc-----ce-------
Confidence 99999999987643 2333333 34555666 99999999999986555543221100 00
Q ss_pred CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
+..+.......+..+.+|...|.+++|+|+|.+| ++++.|+.+++|++..
T Consensus 297 -----------------------------i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 297 -----------------------------ARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -----------------------------EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEEECH
T ss_pred -----------------------------eEEEecCCCcchhheecccCcEEEEEECCCCCEE-EEEcCCCeEEEEECcc
Confidence 0011111122334556888999999999999999 9999999999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=282.66 Aligned_cols=289 Identities=17% Similarity=0.202 Sum_probs=226.9
Q ss_pred CcccceeEeEECCC-CCEEEEeeCCCcEEEEECCCCc-----EEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+|+ +++|||||.||+|+|||+.+++ +...+.+|... +.++.|.+.
T Consensus 38 ~~~V--~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~------------------V~~~~~s~d 97 (340)
T 4aow_A 38 NGWV--TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF------------------VSDVVISSD 97 (340)
T ss_dssp SSCE--EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC------------------EEEEEECTT
T ss_pred cCCE--EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC------------------EEEEEECCC
Confidence 4688 55599997 6899999999999999987654 34455544443 455555543
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEe
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKF 155 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~-~~~ 155 (630)
+.+|++|+.||.|++|+........... .+...+..+.+++++.+|++++.|+.+++||+...... ..+
T Consensus 98 ---------g~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 98 ---------GQFALSGSWDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred ---------CCEEEEEcccccceEEeecccceeeeec-CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence 7889999999999999999988775554 57788999999999999999999999999998766443 345
Q ss_pred ecCCCCeEEEEEccCC--CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 156 RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|...+.+++|++++ .++++++ +.|++||+.+++.+..+.+|..+|++++|+|++++|++++ .|+.|++||+.+
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~~ 246 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNE 246 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEecc
Confidence 6788899999999865 4566666 8999999999999999999999999999999999999988 699999999998
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchh
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
.+.. ..+.+.. .+..++++ |++. +++++.|+.|++||+.++..+...+....
T Consensus 247 ~~~~-----~~~~~~~-~v~~~~~~-----~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------- 298 (340)
T 4aow_A 247 GKHL-----YTLDGGD-IINALCFS-----PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI---------------- 298 (340)
T ss_dssp TEEE-----EEEECSS-CEEEEEEC-----SSSS-EEEEEETTEEEEEETTTTEEEEEECCC------------------
T ss_pred Ccee-----eeecCCc-eEEeeecC-----CCCc-eeeccCCCEEEEEECCCCeEEEeccccce----------------
Confidence 7633 3333433 45566665 7665 55667799999999977655433221100
Q ss_pred hhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.....+|...|.+++|+|||++| ++|+.|+.+++|++..
T Consensus 299 ------------------------------~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 299 ------------------------------STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVTI 337 (340)
T ss_dssp -----------------------------------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEEC
T ss_pred ------------------------------eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCCC
Confidence 00123678899999999999999 9999999999999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=281.77 Aligned_cols=231 Identities=14% Similarity=0.079 Sum_probs=195.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+.+|++|+.||.|++||+.++..+..+. .|..+|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.++
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 103 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 7889999999999999999998876664 799999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCC-ceeeEeecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~-~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+|+|++.+|++++ ++|++||++++ .....+.+|...|.+++|+| ++.+|++++ .|++|++||+...... ...
T Consensus 104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~---~~~ 179 (304)
T 2ynn_A 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPN---FTL 179 (304)
T ss_dssp EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCS---EEE
T ss_pred EEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcc---cee
Confidence 9999999999998 89999999887 45567889999999999999 567888887 6999999999876543 222
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
...+.. .+..+.+.+ .+++.+|++|+.||.|++||+.+++.+
T Consensus 180 ~~~~~~-~v~~~~~~~---~~~~~~l~s~s~D~~i~iWd~~~~~~~---------------------------------- 221 (304)
T 2ynn_A 180 TTGQER-GVNYVDYYP---LPDKPYMITASDDLTIKIWDYQTKSCV---------------------------------- 221 (304)
T ss_dssp ECCCTT-CEEEEEECC---STTCCEEEEEETTSEEEEEETTTTEEE----------------------------------
T ss_pred ccCCcC-cEEEEEEEE---cCCCCEEEEEcCCCeEEEEeCCCCccc----------------------------------
Confidence 222323 334444431 157889999999999999998654321
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
..+.+|...|.+++|+|++.+| +||+.|+++++|+...
T Consensus 222 ---------------------~~~~~h~~~v~~~~~~p~~~~l-~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 222 ---------------------ATLEGHMSNVSFAVFHPTLPII-ISGSEDGTLKIWNSST 259 (304)
T ss_dssp ---------------------EEEECCSSCEEEEEECSSSSEE-EEEETTSCEEEEETTT
T ss_pred ---------------------eeeCCCCCCEEEEEECCCCCEE-EEEcCCCeEEEEECCC
Confidence 1334788899999999999999 9999999999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=334.67 Aligned_cols=322 Identities=14% Similarity=0.175 Sum_probs=259.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...+.++.|+|+
T Consensus 615 ~~~v--~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------ 668 (1249)
T 3sfz_A 615 TDAV--YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD------------------------ 668 (1249)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred cccE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecC------------------------
Confidence 4577 56699999999999999999999999999999998877665554444444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.++++|+.+|.|++||+.+++.+..+. +|...|.+++|+| ++..+++|+.|+.|++||+.+++++..+.+|..
T Consensus 669 ---~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~ 744 (1249)
T 3sfz_A 669 ---DSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN 744 (1249)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS
T ss_pred ---CCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC
Confidence 7889999999999999999999886664 7999999999999 556899999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-------------------------------------------
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------------------------------------------- 195 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~------------------------------------------- 195 (630)
.|.+++|+|++.++++++ |.|++||+.+++....+
T Consensus 745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 999999999999999998 89999998776543322
Q ss_pred ------------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC
Q 006808 196 ------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA 263 (630)
Q Consensus 196 ------------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (630)
.+|...|.+++|+|+++++++++ .|+.|++|++.++.. ...+..+...+..+.|+ |+
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~v~~s-----pd 893 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLK-----VADCRGHLSWVHGVMFS-----PD 893 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-----TT
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-----eeecCCCccceEEEEEC-----CC
Confidence 16778899999999999999887 699999999988753 33344445556677776 99
Q ss_pred CCEEEEEecCCcEEEEEcCCcccccccC----------------------------------------ceeEEeeccCCC
Q 006808 264 GLYVLAISETGVCYIWYGQNIEELRNTK----------------------------------------ATKILSSSEDVN 303 (630)
Q Consensus 264 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~ 303 (630)
|.+|++++.||.|++|++.++....... ..... ..+
T Consensus 894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~ 969 (1249)
T 3sfz_A 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC----CCL 969 (1249)
T ss_dssp SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE----EEE
T ss_pred CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE----EEE
Confidence 9999999999999999975432111000 00111 125
Q ss_pred cccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 304 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
+|+++ .+++|+.+|.+++++ ......+..+.+|...|.+++|+|+|.+| ++++.|+.+++|++.++
T Consensus 970 sp~g~----~l~~g~~~g~i~i~d--------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 970 SPHLE----YVAFGDEDGAIKIIE--------LPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp CTTSS----EEEEEETTSCCEEEE--------TTTTSCEEECCCCSSCCCCEEECSSSSCE-EEECSSSBEEEEETTTT
T ss_pred cCCCC----EEEEEcCCCCEEEEE--------cCCCceeeecccCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCCC
Confidence 66666 788888877655433 23344566777899999999999999999 99999999999998654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=283.69 Aligned_cols=242 Identities=10% Similarity=0.058 Sum_probs=191.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++| .+++|+|++ .|++|+.||+|+|||+.+++.+..+... ..+|. ..+++++|.+.
T Consensus 83 ~~v--~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~-------------~~~H~-~~V~~v~~spd------- 138 (344)
T 4gqb_B 83 AGV--ADLTWVGER-GILVASDSGAVELWELDENETLIVSKFC-------------KYEHD-DIVSTVSVLSS------- 138 (344)
T ss_dssp SCE--EEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEE-------------EECCS-SCEEEEEECTT-------
T ss_pred CCE--EEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeecc-------------ccCCC-CCEEEEEECCC-------
Confidence 467 555999986 6889999999999999998765443210 01232 24556666654
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEeec--CCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA--STK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~ 160 (630)
+.+|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++. +|++++.|++|++||++++++...+.. +..
T Consensus 139 --g~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 215 (344)
T 4gqb_B 139 --GTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215 (344)
T ss_dssp --SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC
T ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeec
Confidence 788999999999999999999988666 58999999999999875 689999999999999999998887653 455
Q ss_pred CeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.+.+++|+|+ +.+|++|+ |+|++||+++++++.++.+|...|++++|+|++. +|++++ .|++|++||+.+++..
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~~~~- 293 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLSELF- 293 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCCEEE-
T ss_pred cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCcEE-
Confidence 7899999995 56778877 8999999999999999999999999999999985 566666 7999999999887532
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~ 284 (630)
....|.. .+..+.|+ |++. +|++++.||+|++|++.+.
T Consensus 294 ----~~~~H~~-~V~~v~~s-----p~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 294 ----RSQAHRD-FVRDATWS-----PLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ----EECCCSS-CEEEEEEC-----SSSTTEEEEEETTSCEEEEECCC-
T ss_pred ----EEcCCCC-CEEEEEEe-----CCCCeEEEEEcCCCeEEEEECCCC
Confidence 2334444 45666776 8875 5778999999999998764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=288.04 Aligned_cols=319 Identities=11% Similarity=0.047 Sum_probs=233.5
Q ss_pred CCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 2 ~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
..++| .+++|+|+|++||+|+.||.|+|||+.+++ .+..+.+|... +.++.|.+.
T Consensus 7 ~~~~i--~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~--- 63 (372)
T 1k8k_C 7 LVEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ------------------VTGVDWAPD--- 63 (372)
T ss_dssp CSSCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC------------------EEEEEEETT---
T ss_pred cCCCe--EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCc------------------ccEEEEeCC---
Confidence 35788 555999999999999999999999999887 77777655444 455666553
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEc-cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---eEE-
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGK- 154 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~-~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~---~~~- 154 (630)
+.+|++++.+|.|++||+.+++..... ...|...|.+++|+|++++|++++.|+.|++||+..++. ...
T Consensus 64 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~ 137 (372)
T 1k8k_C 64 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 137 (372)
T ss_dssp ------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred ------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence 778999999999999999988754332 356899999999999999999999999999999988763 333
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEEEEC------------------CCCceeeEeecCCCCeEEEEEeeCCcEE
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNC------------------SDHKKMQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~------------------~~~~~~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
...|...|.+++|+|++.+|++++ |.|++||+ ..++.+..+.+|...|.+++|+|++++|
T Consensus 138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence 356788999999999999999987 89999995 4677888888999999999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC--cc--ccccc
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN--IE--ELRNT 290 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~--~~~~~ 290 (630)
++++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++.+|+++ .||.|++|++.+ +. .+...
T Consensus 218 ~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~v~~~~~~-----~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 218 AWVS-HDSTVCLADADKKMAV-----ATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEE-TTTEEEEEEGGGTTEE-----EEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred EEEe-CCCEEEEEECCCCcee-----EEEccCCCCeEEEEEe-----cCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 9988 6999999999887633 3333444455666666 888888877 899999999977 42 22211
Q ss_pred CceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEE-eccCCCcEEEeec-CCc---ceee
Q 006808 291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI-LVNSGEDINLNCS-QDG---VLLP 365 (630)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~-~~h~~~v~~~~~s-~dg---~~l~ 365 (630)
......... ..... .++- ..+. .+... +. ..+. ..+ .+|...|.+++|. ++| .+|
T Consensus 286 ~~~~~~~~~-------~~~~~-~~~~-~~~~-----~~~~~---~~-~~~~-~~~~~~h~~~v~~~~~~~~~g~~~~~l- 345 (372)
T 1k8k_C 286 DVPKQSSQR-------GLTAR-ERFQ-NLDK-----KASSE---GS-AAAG-AGLDSLHKNSVSQISVLSGGKAKCSQF- 345 (372)
T ss_dssp CCC---------------CHH-HHHH-HCCC-----CC--------------CCCSSSSSSCEEEEEEEESTTTSCSEE-
T ss_pred Cccccchhh-------hcchh-hhhh-hccc-----ccccc---cC-cccc-ccccccccCCcceeEEecCCCcceeeE-
Confidence 111100000 00000 0000 0000 00000 00 0000 112 3899999999966 777 898
Q ss_pred ccccceeccccceecc
Q 006808 366 MSQSLLKSKRGRYVQN 381 (630)
Q Consensus 366 ~s~s~d~~~~~w~~~~ 381 (630)
+||+.|+.+++|++.+
T Consensus 346 ~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 346 CTTGMDGGMSIWDVRS 361 (372)
T ss_dssp EEEETTSEEEEEEHHH
T ss_pred EEecCCCceEEEEecC
Confidence 9999999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=311.77 Aligned_cols=298 Identities=18% Similarity=0.195 Sum_probs=226.2
Q ss_pred CcccceeEeEECCCC-CEEEEeeCCCcEEEEECCCC-----cEEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKG-----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+|++ ++|++|+.|++|+||++.+. .....+.+|...+ .+++|.+.
T Consensus 382 ~~~V--~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v------------------~~v~~s~~ 441 (694)
T 3dm0_A 382 TDMV--TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV------------------EDVVLSSD 441 (694)
T ss_dssp SSCE--EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCE------------------EEEEECTT
T ss_pred Ccee--EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcE------------------EEEEECCC
Confidence 4678 555999875 79999999999999998763 3445566555444 45555443
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe-
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF- 155 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~- 155 (630)
+.+|++|+.||.|++||+.++.....+ .+|...|.+++|+|++++|++|+.|++|++||+.........
T Consensus 442 ---------g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 442 ---------GQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp ---------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred ---------CCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence 788999999999999999999887666 479999999999999999999999999999998654333222
Q ss_pred --ecCCCCeEEEEEccCC--CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 156 --RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 156 --~~~~~~v~~l~~~p~~--~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.+|...|.+++|+|++ ..+++++ ++|++||+++++....+.+|.+.|++++|+|++++|++++ .|+.|++||+
T Consensus 512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd~ 590 (694)
T 3dm0_A 512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDL 590 (694)
T ss_dssp STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEET
T ss_pred CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC
Confidence 3577889999999986 5788887 8999999999999999999999999999999999999988 6999999999
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccc
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS 309 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (630)
.+++. +..+.+. ..+..++|+ |++.++++++ ++.|+|||+.++..+........... .
T Consensus 591 ~~~~~-----~~~~~~~-~~v~~~~~s-----p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~---------~- 648 (694)
T 3dm0_A 591 AEGKK-----LYSLEAN-SVIHALCFS-----PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA---------E- 648 (694)
T ss_dssp TTTEE-----EECCBCS-SCEEEEEEC-----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred CCCce-----EEEecCC-CcEEEEEEc-----CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc---------c-
Confidence 98763 3333333 346667776 8888877765 56699999998876654332110000 0
Q ss_pred hhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 310 ~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.....+ . .....+...+.+++|||||.+| +||+.|+++++|++.
T Consensus 649 ------~~~~~~--------------~------~~~~~~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 649 ------KADNSG--------------P------AATKRKVIYCTSLNWSADGSTL-FSGYTDGVIRVWGIG 692 (694)
T ss_dssp --------------------------------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred ------cccccc--------------c------ccCCceeEEeeeEEEcCCCCEE-EEEcCCCeEEEEecc
Confidence 000000 0 0001223346889999999999 999999999999974
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=289.80 Aligned_cols=283 Identities=10% Similarity=0.046 Sum_probs=211.8
Q ss_pred cccceeEeEECCCCCEEEEeeCCC-------cEEEEECCCCcEE----------EEeccccccccccccccccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDA-------RIKIWDTLKGQVQ----------TEFADIASTETTSLYGNRLEREHLSV 66 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg-------~i~vwd~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~~~~~~ 66 (630)
-|| .|++|+|||++||+|+.+. .|++|++..+... ..+.++..
T Consensus 15 ~PV--~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~------------------ 74 (365)
T 4h5i_A 15 YPA--YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDD------------------ 74 (365)
T ss_dssp SCE--EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSC------------------
T ss_pred CCE--EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCC------------------
Confidence 489 6679999999999997543 5999998765321 11222221
Q ss_pred ceeeEEecccccccccccCCcEEEE-----------EeCCCeEEEEEccCCeeeEEc--------cCCCCCCEEEEEEec
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVL-----------GTGGGDVLALAVSAGQLKWRL--------SDCHPGGVSAISFAT 127 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~-----------~~~~g~v~iwd~~~~~~~~~~--------~~~h~~~v~~~~~s~ 127 (630)
.+.++.|. +..+++ ++.++.+++|++......... ...+...+.+++|+|
T Consensus 75 ~v~s~~~~-----------~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp 143 (365)
T 4h5i_A 75 SPTAIDAS-----------KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR 143 (365)
T ss_dssp CCCEEEEE-----------TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred ceEEEEeC-----------CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence 23344432 233444 445778999998765322111 123445699999999
Q ss_pred CCCEEEEE--eCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeE--eecCCCCe
Q 006808 128 HGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK--FSGHPGAV 202 (630)
Q Consensus 128 ~g~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~--~~~h~~~v 202 (630)
||++++++ +.|++|++||+.+++++..+. |...|.+++|+|+|+++++++ +.+.+|+..+++.+.. ..+|...|
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence 99997654 478999999999999998887 677899999999999999998 7888888888876543 35688899
Q ss_pred EEEEEeeCCcEEEEEeeCCC----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 203 RFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
.+++|+|+++++++++. |+ .+++|++....... .....+..+...+.++.|+ |+|++||+|+.||.|+|
T Consensus 223 ~~v~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 223 SKINFIADDTVLIAASL-KKGKGIVLTKISIKSGNTSV-LRSKQVTNRFKGITSMDVD-----MKGELAVLASNDNSIAL 295 (365)
T ss_dssp EEEEEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEEE-EEEEEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEE
T ss_pred EEEEEcCCCCEEEEEec-CCcceeEEeecccccceecc-eeeeeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEE
Confidence 99999999999999884 55 68899987765321 1122333444456677787 99999999999999999
Q ss_pred EEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
||+.+++.+... +.+|...|++++||
T Consensus 296 wd~~~~~~~~~~------------------------------------------------------~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 296 VKLKDLSMSKIF------------------------------------------------------KQAHSFAITEVTIS 321 (365)
T ss_dssp EETTTTEEEEEE------------------------------------------------------TTSSSSCEEEEEEC
T ss_pred EECCCCcEEEEe------------------------------------------------------cCcccCCEEEEEEC
Confidence 999776543211 12788899999999
Q ss_pred CCcceeeccccceeccccceec
Q 006808 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|||++| +|||.|+++|+|++.
T Consensus 322 pdg~~l-aS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 322 PDSTYV-ASVSAANTIHIIKLP 342 (365)
T ss_dssp TTSCEE-EEEETTSEEEEEECC
T ss_pred CCCCEE-EEEeCCCeEEEEEcC
Confidence 999999 999999999999984
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=306.07 Aligned_cols=309 Identities=12% Similarity=-0.000 Sum_probs=211.8
Q ss_pred EeeCCCcEEEEECCCCcEEE----EecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCe
Q 006808 22 ICSGDARIKIWDTLKGQVQT----EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD 97 (630)
Q Consensus 22 s~s~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~ 97 (630)
+++.|++|+||++.++++.. .+..+ ...+.+++|.|.... ...+.+|++|+.||+
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~------------------~~~V~~v~wsp~~~~---~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHS------------------FGEVWDLKWHEGCHA---PHLVGCLSFVSQEGT 236 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEEC------------------CCSEEEEEECSSCCC---SSSSCEEEEEETTSC
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEec------------------CCcEEEEEECCCCCC---CCCCceEEEEecCCe
Confidence 35578899999998776422 22222 224667777764100 001578999999999
Q ss_pred EEEEEccCCeee----------EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEeecCCCCeEEE-
Q 006808 98 VLALAVSAGQLK----------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCM- 165 (630)
Q Consensus 98 v~iwd~~~~~~~----------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l- 165 (630)
|++||+.++... ...+.+|...|++++|++++ .|++|+.||+|++||+.++. +...+.+|...|.++
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 999999876421 11235799999999999864 89999999999999999774 456688999999999
Q ss_pred -EEccCC-CEEEEeC--CeEEEEECCCCceeeEeecCCC--CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 166 -AVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 166 -~~~p~~-~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+|+|++ .+|++++ ++|++||+++++++.++.+|.. .|.+++|+|+++.+++++ .|++|++||++.+... .
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~---~ 391 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAV---H 391 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCC---E
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccc---e
Confidence 578887 8899988 8999999999888888877753 588999999999988877 6999999999987632 1
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee-----EEeeccCCCcccccchhhhh
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-----ILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i 314 (630)
.+ ..|.. .+..+.|+ |+|.+|++|+.||+|++||.... .+..++... ..+. ...|+|+++ .+
T Consensus 392 ~l-~gH~~-~V~sva~S-----p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~-~v~~sp~g~----~~ 458 (524)
T 2j04_B 392 PL-VSRET-TITAIGVS-----RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLW-KWDYSIKDD----KY 458 (524)
T ss_dssp EE-EECSS-CEEEEECC-----SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEE-ECBCCSSSC----EE
T ss_pred ee-ecCCC-ceEEEEeC-----CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEE-EeccCCCCC----eE
Confidence 11 23444 45566676 99999999999999999998654 333322111 0111 112566554 12
Q ss_pred hhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc---eeeccccceeccccceec
Q 006808 315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 315 ~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~~~~w~~~ 380 (630)
.. .+..+++. +. ........+.+|...|.+++|+|++. .| ++|+.|+++|+|++.
T Consensus 459 -~~--~~~~~~~~---~~----~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l-Asg~~~g~vrlw~l~ 516 (524)
T 2j04_B 459 -RI--DSSYEVYP---LT----VNDVSKAKIDAHGINITCTKWNETSAGGKCY-AFSNSAGLLTLEYLS 516 (524)
T ss_dssp -EE--CCCCCCCC--------------------CCCSCCCEEECCSTTTTTEE-EEECTTSEEEEEECS
T ss_pred -Ec--cCCceecc---cc----cCCcceeeecCCCceEEEEECCCCCCccHHH-HhhccCceEEEEEcc
Confidence 11 11111110 00 01234556778999999999999964 77 999999999999984
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=284.57 Aligned_cols=297 Identities=11% Similarity=0.125 Sum_probs=232.1
Q ss_pred CcccceeEeEECCC----CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|+ ...+++++.++.|+|||+.+++.+..+..+.. ......+.+++|.+...
T Consensus 18 ~~~v--~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 18 NQPL--FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-------------ADADENFYTCAWTYDSN 82 (366)
T ss_dssp CSCE--EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-------------SCTTCCEEEEEEEECTT
T ss_pred CCce--EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-------------cCCCCcEEEEEeccCCC
Confidence 4688 56699984 34566666677999999998888777664322 11234678888887642
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEe--
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~-- 155 (630)
. ++.+|++|+.+|.|++||+.+++.+..+. +|...|.+++|+| ++.+|++++.||.|++||+.+++.+..+
T Consensus 83 ~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 83 T-----SHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp T-----CCEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred C-----CCCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 1 15689999999999999999998886664 7999999999999 9999999999999999999999998888
Q ss_pred -ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee----------------------------cCCCCeEE
Q 006808 156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------------------------GHPGAVRF 204 (630)
Q Consensus 156 -~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~----------------------------~h~~~v~~ 204 (630)
..|...|.+++|+|++.+|++++ |.|++||+++++....+. +|...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 67899999999999999999988 899999999876554433 39999999
Q ss_pred EEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc---------ceeeeeecCCceeeeeEEecCCccCCC--CCEEEEEecC
Q 006808 205 MTFSDNGKYVLSSAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDA--GLYVLAISET 273 (630)
Q Consensus 205 l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d 273 (630)
++|+ +.++++++ .|+.|++||+.+..... ......+..+...+..+.|+ |+ +.+|++|+.|
T Consensus 237 ~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~d 308 (366)
T 3k26_A 237 VRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MDFWQKMLALGNQV 308 (366)
T ss_dssp EEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----ECTTSSEEEEECTT
T ss_pred EEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CCCCCcEEEEEecC
Confidence 9999 67888887 69999999998765310 01122333333344555555 77 9999999999
Q ss_pred CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEecc--CCC
Q 006808 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN--SGE 351 (630)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h--~~~ 351 (630)
|.|++||+.+++..... ...+.+| ...
T Consensus 309 g~i~vwd~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~ 337 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAK---------------------------------------------------CTTLTHHKCGAA 337 (366)
T ss_dssp SCEEEEECCSSSGGGCE---------------------------------------------------EEEECCTTCCSC
T ss_pred CcEEEEECCCCCCcccc---------------------------------------------------ceEEcccccCCc
Confidence 99999999776542210 0122234 678
Q ss_pred cEEEeecCCcceeeccccceeccccceec
Q 006808 352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|.+++|+|+|.+| ++++.|+.+++|++.
T Consensus 338 v~~~~~s~~~~~l-~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 338 IRQTSFSRDSSIL-IAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred eEEEEeCCCCCeE-EEEeCCCEEEEEEec
Confidence 9999999999999 999999999999974
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=282.82 Aligned_cols=310 Identities=12% Similarity=0.113 Sum_probs=231.1
Q ss_pred CcccceeEeEECCCCCEE-EEeeC---CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPALDYF-AICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~l-as~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|++..+ ++|+. ||.|+|||+.+++....... +| ...+.++.|.+..+
T Consensus 18 ~~~v--~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~----------------~~-~~~v~~~~~~~~~~ 78 (357)
T 3i2n_A 18 NYTV--FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI----------------EK-AKPIKCGTFGATSL 78 (357)
T ss_dssp SSCE--EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE----------------EE-SSCEEEEECTTCCT
T ss_pred CCce--EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee----------------cc-cCcEEEEEEcCCCC
Confidence 4578 566999999655 56665 89999999998886544320 12 23567788877643
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCe-eeEEccCCCCCCEEEEEE------ecCCCEEEEEeCCCcEEEEeCCCCc-
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF------ATHGSCIYSAGADGMVCEIDPLTGS- 150 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~-~~~~~~~~h~~~v~~~~~------s~~g~~l~s~~~dg~v~iwd~~~~~- 150 (630)
+ +.+|++|+.+|.|++||+.+++ .+..+ .+|...|.++.| +|++++|++++.||.|++||+.+++
T Consensus 79 ~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 79 Q------QRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp T------TCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred C------CceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence 2 5789999999999999999988 55444 589999999955 6789999999999999999999887
Q ss_pred eeEEeecCCC----CeEEEE----EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEee---CCcEEEEE
Q 006808 151 LLGKFRASTK----GISCMA----VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVLSS 217 (630)
Q Consensus 151 ~~~~~~~~~~----~v~~l~----~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~~~ 217 (630)
.+..+..+.+ .+.+++ |+|++.++++++ |.|++||+++++.... ..|...|.+++|+| ++.+++++
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~ 230 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVAT 230 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEE
T ss_pred cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEE
Confidence 7777776554 888998 788999999987 8999999999887544 56889999999999 89999998
Q ss_pred eeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCcccccccCceeEE
Q 006808 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKATKIL 296 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (630)
+ .|+.|++||+.+++............+...+..+.|+ |++. +|++++.||.|++||+.++.......
T Consensus 231 ~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----- 299 (357)
T 3i2n_A 231 S-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKD----- 299 (357)
T ss_dssp E-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CC-----
T ss_pred C-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCccccccc-----
Confidence 7 6999999999887644111111222334455566666 8888 89999999999999987665422111
Q ss_pred eeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccc
Q 006808 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG 376 (630)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~ 376 (630)
..+. .. ...+ ....+..+.+|...|.+++|+|+|.+|+++++.|+.+++
T Consensus 300 --------~~g~----~~----------~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 300 --------SEGI----EM----------GVAG---------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp --------TTSC----CC----------CCCC---------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred --------CCCC----cc----------cccc---------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 1111 00 0000 112344667899999999999999999338999999999
Q ss_pred ceecc
Q 006808 377 RYVQN 381 (630)
Q Consensus 377 w~~~~ 381 (630)
|++.+
T Consensus 349 w~~~~ 353 (357)
T 3i2n_A 349 LIVTK 353 (357)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99853
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=276.90 Aligned_cols=236 Identities=19% Similarity=0.296 Sum_probs=198.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc----EEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|+|++||+|+.|+.|++|++.++. ....+.+|.. .+.++.|.+
T Consensus 97 ~~~v--~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~--- 153 (340)
T 1got_B 97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG------------------YLSCCRFLD--- 153 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS------------------CEEEEEEEE---
T ss_pred CccE--EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc------------------cEEEEEECC---
Confidence 3457 667999999999999999999999998753 3344443332 455666654
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
...+++++.||.|++||+.+++.+..+ .+|.+.|.+++|+|++++|++|+.|++|++||+++++++..+.+|
T Consensus 154 -------~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 154 -------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp -------TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred -------CCcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 335899999999999999999988665 479999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec--CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
...|.+++|+|++.+|++++ |+|++||+++++.+..+.. +...|++++|+|++++|++++ .|+.|++||+.++..
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR 304 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEcccCcE
Confidence 99999999999999999998 8999999999988777652 335799999999999999988 699999999988763
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
. ..+..+...+.++.|+ |+|.+|++|+.||.|+|||
T Consensus 305 ~-----~~~~~h~~~v~~~~~s-----~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 305 A-----GVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp E-----EEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred e-----eEeecCCCcEEEEEEc-----CCCCEEEEEcCCccEEecC
Confidence 3 2333444456677777 9999999999999999996
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=314.48 Aligned_cols=248 Identities=13% Similarity=0.225 Sum_probs=211.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .+++|+|+|++||+|+.||.|+|||+.++..+..+.+|... ++++.|.+.
T Consensus 13 ~~~v--~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~------------------v~~~~~s~~------ 66 (814)
T 3mkq_A 13 SDRV--KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP------------------VRAGKFIAR------ 66 (814)
T ss_dssp CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------------EEEEEEEGG------
T ss_pred CCce--EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCc------------------EEEEEEeCC------
Confidence 4678 55699999999999999999999999999999888766554 445555553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (630)
+.+|++|+.+|.|++||+.+++.+..+ .+|...|++++|+|++++|++++.||.|++||+.++ .....+..|...
T Consensus 67 ---~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 142 (814)
T 3mkq_A 67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF 142 (814)
T ss_dssp ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred ---CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence 778999999999999999999988666 479999999999999999999999999999999987 677788899999
Q ss_pred eEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCC-CCeEEEEEee--CCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 162 v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-~~v~~l~~sp--~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|.+++|+| ++..+++++ |.|++||+.++.....+..+. ..+.+++|+| ++.++++++ .|+.|++||+.+++.
T Consensus 143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~- 220 (814)
T 3mkq_A 143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSC- 220 (814)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEE-
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE-
Confidence 99999999 888898887 899999999888877776555 8899999999 999999988 699999999988763
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
...+..+...+.++.|+ |++.+|++++.||.|++||..+++.+....
T Consensus 221 ----~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 267 (814)
T 3mkq_A 221 ----VATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267 (814)
T ss_dssp ----EEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred ----EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence 33333344456666776 999999999999999999999887665543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=284.47 Aligned_cols=286 Identities=11% Similarity=0.088 Sum_probs=218.7
Q ss_pred CcccceeEeEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+|+| ++||+|+.||.|+|||+.++.....+.. .+| ...+.++.|.+.+
T Consensus 73 ~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~h-~~~v~~~~~~~~~---- 130 (383)
T 3ei3_B 73 DRRV--TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG---------------MGP-GDAITGMKFNQFN---- 130 (383)
T ss_dssp SSCE--EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC---------------CST-TCBEEEEEEETTE----
T ss_pred CCCE--EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec---------------CCc-CCceeEEEeCCCC----
Confidence 3577 566999999 9999999999999999998887766541 022 2356677777643
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+.+|++++.+|.|++||+.+.... .+. .+|...|.+++|+|++++|++++.|+.|++||+ +++++..+..|.
T Consensus 131 ----~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~ 204 (383)
T 3ei3_B 131 ----TNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK 204 (383)
T ss_dssp ----EEEEEEEETTTEEEEEETTSCEEE-EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS
T ss_pred ----CCEEEEEeCCCEEEEEECCCCceE-EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC
Confidence 678999999999999999964432 332 235588999999999999999999999999999 688889999999
Q ss_pred CCeEEEEEccCCC-EEEEeC--CeEEEEECCC----CceeeEeecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGK-MLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~----~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|.+++|+|++. ++++++ +.|++||+++ +..+..+ +|...|.+++|+| ++.+|++++ .|+.|++||+.+
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~ 282 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYD 282 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEETTB
T ss_pred CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEECCC
Confidence 9999999999998 888887 8999999988 5566666 6999999999999 999999988 699999999988
Q ss_pred Cccccceeeee---ecCCc---------eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeec
Q 006808 232 VKKQSASCVLA---MEHPA---------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (630)
Q Consensus 232 ~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (630)
+.......... ..+.. .....+.++ |++.+ +++.||.|+|||+.+++.+....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-----~dg~~--s~s~d~~i~iwd~~~~~~~~~l~-------- 347 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-----PDDQL--LLNDKRTIDIYDANSGGLVHQLR-------- 347 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB-----CCTTT--CTTCCCCEEEEETTTCCEEEEEC--------
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEec-----CCccc--ccCCCCeEEEEecCCCceeeeec--------
Confidence 76431100000 00111 111123333 66665 67789999999987765432211
Q ss_pred cCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+ ..|...+..++|+|+|.+| ++|+ |+.+++|++
T Consensus 348 -------~--------------------------------------~~~~~~~~~~~~s~~g~~l-~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 348 -------D--------------------------------------PNAAGIISLNKFSPTGDVL-ASGM-GFNILIWNR 380 (383)
T ss_dssp -------B--------------------------------------TTBCSCCCEEEECTTSSEE-EEEE-TTEEEEEEC
T ss_pred -------C--------------------------------------CCCCceEEEEEEecCccEE-EEec-CCcEEEEec
Confidence 0 0133456677999999999 8887 999999998
Q ss_pred c
Q 006808 380 Q 380 (630)
Q Consensus 380 ~ 380 (630)
.
T Consensus 381 ~ 381 (383)
T 3ei3_B 381 E 381 (383)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=330.92 Aligned_cols=339 Identities=18% Similarity=0.230 Sum_probs=263.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...+ .++.|.+...
T Consensus 657 ~~~v--~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~---- 712 (1249)
T 3sfz_A 657 EDEV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV------------------NCCHFTNKSN---- 712 (1249)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE------------------EEEEECSSSS----
T ss_pred CCCE--EEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE------------------EEEEEecCCC----
Confidence 4678 666999999999999999999999999999999888665544 4555554321
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee------
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR------ 156 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~------ 156 (630)
..++++|+.+|.|++||+.++.....+. +|...|++++|+|+++++++++.||.|++||+.+++....+.
T Consensus 713 ---~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~ 788 (1249)
T 3sfz_A 713 ---HLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788 (1249)
T ss_dssp ---CCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred ---ceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence 5689999999999999999999886664 799999999999999999999999999999987765443321
Q ss_pred -------------------------------------------------cCCCCeEEEEEccCCCEEEEeC--CeEEEEE
Q 006808 157 -------------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFN 185 (630)
Q Consensus 157 -------------------------------------------------~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd 185 (630)
+|...|.+++|+|++.++++++ |.|++||
T Consensus 789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868 (1249)
T ss_dssp -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 5667889999999999999998 8999999
Q ss_pred CCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce--------------------------e
Q 006808 186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------------------C 239 (630)
Q Consensus 186 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--------------------------~ 239 (630)
+.++..+..+.+|...|++++|+|++++|++++ .|+.|++|++......... .
T Consensus 869 ~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred cCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence 999999999999999999999999999999988 6999999997642110000 0
Q ss_pred eee------ecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 240 VLA------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 240 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
... .......+.+++++ |++.++++|+.+|.|++|++.++..+.........+.+. .++++++ .
T Consensus 948 ~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l-~~s~dg~----~ 1017 (1249)
T 3sfz_A 948 LIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI-QFTADGK----T 1017 (1249)
T ss_dssp EEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE-EECSSSS----C
T ss_pred EEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEE-EECCCCC----E
Confidence 000 00112235566666 999999999999999999999887765543332222221 2677777 8
Q ss_pred hhhccccccccCCce------------------------eE--------EEEEcCccCceeeEEeccCCCcEEEeecCCc
Q 006808 314 IFAAKLQDIVKPASV------------------------HT--------FVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (630)
Q Consensus 314 i~~~~~d~~~~~~~~------------------------~~--------~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (630)
+++++.|+.+++|+. .+ +..+..........+.+|...|.+++|+|||
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 1097 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1097 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSS
T ss_pred EEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCC
Confidence 888888887766531 11 1112222334556777899999999999999
Q ss_pred ceeeccccceeccccceecc
Q 006808 362 VLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 362 ~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+| ++++.|+++++|++..
T Consensus 1098 ~~l-~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A 1098 TKF-SSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp SSC-EEECCSSCCCEECSSS
T ss_pred CEE-EEEcCCCcEEEEECCC
Confidence 999 9999999999999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=294.37 Aligned_cols=241 Identities=9% Similarity=0.110 Sum_probs=185.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.||.|+|||+.++ +.+..+.+|... +.+++|.+.
T Consensus 11 ~~~v--~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~------------------v~~~~~s~~---- 66 (377)
T 3dwl_C 11 PKPS--YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI------------------VTCVDWAPK---- 66 (377)
T ss_dssp SSCC--SCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC------------------EEEEEECTT----
T ss_pred CCcE--EEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce------------------EEEEEEeCC----
Confidence 4688 45599999999999999999999999988 566666655444 455566553
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc---eeEE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGK 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~---~~~~ 154 (630)
+.+|++|+.||.|++||+.++. ....+ .+|...|.+++|+|++++|++++.|+.|++||+.+++ ....
T Consensus 67 -----~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 140 (377)
T 3dwl_C 67 -----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH 140 (377)
T ss_dssp -----TCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred -----CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence 6789999999999999999887 34333 4799999999999999999999999999999999887 4677
Q ss_pred eec-CCCCeEEEEEccCCCEEEEeC--CeEEEEECC------------------CCceeeEeecCCCCeEEEEEeeCCcE
Q 006808 155 FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCS------------------DHKKMQKFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 155 ~~~-~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~------------------~~~~~~~~~~h~~~v~~l~~sp~~~~ 213 (630)
+.. |...|.+++|+|++++|++++ +.|++||+. .++++..+ +|...|++++|+|++++
T Consensus 141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence 877 899999999999999999988 899999985 34556666 89999999999999999
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
|++++ .|+.|++||+.+++... ..+..+..+...+..+.|+ |++.+|++++.++.+ +|+..
T Consensus 220 l~~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 220 LAYAG-HDSSVTIAYPSAPEQPP-RALITVKLSQLPLRSLLWA-----NESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEE-TTTEEC-CEECSTTSCE-EECCCEECSSSCEEEEEEE-----ETTEEEEEESSSSEE-EECCC
T ss_pred EEEEe-CCCcEEEEECCCCCCcc-eeeEeecCCCCceEEEEEc-----CCCCEEEEEcCCcEE-EEEeC
Confidence 99988 69999999999887420 1123333444455666676 899999888766655 66654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=288.04 Aligned_cols=304 Identities=13% Similarity=0.144 Sum_probs=242.8
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+++++|++|++|+.||+|++||+.+++.+..+.+|...+ .++.|. +.++++
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v------------------~~~~~~-----------~~~l~s 174 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV------------------WSSQMR-----------DNIIIS 174 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCE------------------EEEEEE-----------TTEEEE
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCE------------------EEEEec-----------CCEEEE
Confidence 567789999999999999999999999998887665443 445443 457999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
|+.||.|++||+.+++.+..+ .+|...|.++.|+ ++.+++|+.||.|++||+.+++++..+.+|...|.+++| ++
T Consensus 175 ~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG 249 (445)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred EeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence 999999999999999988666 4799999999995 568999999999999999999999999999999999999 67
Q ss_pred CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCcee
Q 006808 172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249 (630)
Q Consensus 172 ~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 249 (630)
.++++++ |.|++||+.+++.+..+.+|...|.++.| ++.++++++ .|+.|++||+.+++.. ..+..+...
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~ 321 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNCI-----HTLTGHQSL 321 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCEE-----EEECCCCSC
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCEE-----EEEcCCccc
Confidence 7888887 89999999999999999999999999999 788998888 6999999999987633 233333333
Q ss_pred eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc---eeEEeeccCCCcccccchhhhhhhccccccccCC
Q 006808 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 326 (630)
+.... +++.++++|+.||.|++||+.+++.+..... ....+.+.. + +++ .+++++.||.+++|
T Consensus 322 v~~~~-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~----~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 322 TSGME-------LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKN----FVITSSDDGTVKLW 387 (445)
T ss_dssp EEEEE-------EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSS----EEEEEETTSEEEEE
T ss_pred EEEEE-------EeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCC----EEEEEeCCCeEEEE
Confidence 33333 3578999999999999999998877655432 111111111 2 233 88999998876665
Q ss_pred ceeEEEEEcCccCceeeEE-----eccCCCcEEEeecCCcceeeccccceec----cccceec
Q 006808 327 SVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ 380 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~ 380 (630)
+ ......+..+ ..|.+.|.+++|+|+|.++ ++|+.|++ +.+|++.
T Consensus 388 d--------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-a~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 388 D--------LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp E--------TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred E--------CCCCceeeeeeccccCCCCceEEEEEecCCEEEE-EEcccCCCCccEEEEEECC
Confidence 4 2222333344 3688899999999999999 99999998 8888885
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=280.19 Aligned_cols=241 Identities=18% Similarity=0.287 Sum_probs=199.3
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|+|+|++||+|+.|++|+|||+.+++.+..+.+|...+. ++.|.+. +..
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~------------------~~~~~p~---------~~~ 179 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY------------------SLDYFPS---------GDK 179 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEECTT---------SSE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE------------------EEEEcCC---------CCE
Confidence 4569999999999999999999999999999888886665444 4555443 778
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEe-------ecCCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-------RASTK 160 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~ 160 (630)
|++|+.||.|++||+.+++....+ .+...+.+++|+| ++++|++|+.|+.|++||+.+++.+..+ .+|..
T Consensus 180 l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~ 257 (393)
T 1erj_A 180 LVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257 (393)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred EEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC
Confidence 999999999999999999887665 3667899999999 8999999999999999999999888776 56888
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCC------------ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~------------~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.|.+++|+|++.+|++++ +.|++||+.+. .+...+.+|...|.+++|+|++.+|++++ .|+.|++
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~i 336 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLF 336 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEE
Confidence 999999999999999998 89999999753 34567789999999999999999999988 6999999
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
||+.+++.. .. ...|...+..+.+.+...+.|++.+|++|+.||.|+||++..
T Consensus 337 wd~~~~~~~---~~-l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 337 WDKKSGNPL---LM-LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EETTTCCEE---EE-EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EECCCCeEE---EE-ECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999987643 12 223555554444443334557899999999999999999754
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-32 Score=297.82 Aligned_cols=338 Identities=14% Similarity=0.100 Sum_probs=252.0
Q ss_pred cc-cceeEeEECC--CCCEEEEeeCCCcEEEEECCCC--------cEEEEeccccccccccccccccccccc--------
Q 006808 4 SN-IRDILTSFSP--ALDYFAICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHL-------- 64 (630)
Q Consensus 4 ~~-V~~~~~~fs~--dg~~las~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~-------- 64 (630)
++ | .+++|+| +|++||+|+.||.|+|||+.++ .....+..|...+..+.|+++ +..
T Consensus 64 ~~~v--~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~~~ 138 (615)
T 1pgu_A 64 SSVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE---GRRLCVVGEGR 138 (615)
T ss_dssp TSCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT---SSEEEEEECCS
T ss_pred CceE--EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC---CCEEEEeccCC
Confidence 45 7 5669999 9999999999999999999755 677788888888888888876 211
Q ss_pred ---------------------ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCC---CE
Q 006808 65 ---------------------SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GV 120 (630)
Q Consensus 65 ---------------------~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~---~v 120 (630)
...+.++.|.+.. ...+++++.+|.|++||+.+++.+..+. +|.. .|
T Consensus 139 ~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~--------~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v 209 (615)
T 1pgu_A 139 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR--------PMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFV 209 (615)
T ss_dssp SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS--------SCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCE
T ss_pred CCccEEEEEECCCcceeeecCCccEEEEEECCCC--------CcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCCceE
Confidence 1245666666542 3379999999999999999998886664 6888 99
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEEe-e---cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceee
Q 006808 121 SAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKF-R---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 121 ~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~~-~---~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~ 193 (630)
.+++|+|+ +++|++++.||.|++||+.+++.+..+ . .|...|.+++|+ ++.+|++++ +.|++||+.+++.+.
T Consensus 210 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 210 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQ 288 (615)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 99999999 999999999999999999999999998 6 799999999999 999999988 899999998776554
Q ss_pred Eeec---------------------------------------------CCCCeE-------------------------
Q 006808 194 KFSG---------------------------------------------HPGAVR------------------------- 203 (630)
Q Consensus 194 ~~~~---------------------------------------------h~~~v~------------------------- 203 (630)
.+.. |...|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~ 368 (615)
T 1pgu_A 289 KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH 368 (615)
T ss_dssp EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE
T ss_pred EEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc
Confidence 4432 222333
Q ss_pred --------EEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc-----------------------------------------
Q 006808 204 --------FMTFSDNGKYVLSSAVGERYIALWRTDGVKK----------------------------------------- 234 (630)
Q Consensus 204 --------~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~----------------------------------------- 234 (630)
+++| +++..+++++ .|+.|++|++...+.
T Consensus 369 ~~~~~~v~~~~~-~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (615)
T 1pgu_A 369 QDHSNLIVSLDN-SKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 446 (615)
T ss_dssp CCCCSCEEEEEC-CSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CcccCceEEEEE-CCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccC
Confidence 3333 2234444444 344555444432100
Q ss_pred -------------------ccce---------ee-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 235 -------------------QSAS---------CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 235 -------------------~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.... .. ..+..+...+..+.|+ |++.+|++++.||.|++||+.+++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEeeCCCCc
Confidence 0000 00 2222334455666776 999999999999999999999998
Q ss_pred cccccCc----eeEEeeccCCCcc----------cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCC
Q 006808 286 ELRNTKA----TKILSSSEDVNSK----------SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351 (630)
Q Consensus 286 ~~~~~~~----~~~~~~~~~~~~~----------~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~ 351 (630)
.+..... ....+. |+| +++ .+++++.|+.+++|+. . .....+..+.+|...
T Consensus 522 ~~~~~~~~h~~~v~~~~----~sp~~~~~~~~~~~~~----~l~~~~~dg~i~iw~~-----~--~~~~~~~~~~~h~~~ 586 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAIS----WKPAEKGANEEEIEED----LVATGSLDTNIFIYSV-----K--RPMKIIKALNAHKDG 586 (615)
T ss_dssp EEECCSCCCSSCEEEEE----ECCCC------CCSCC----EEEEEETTSCEEEEES-----S--CTTCCEEETTSSTTC
T ss_pred ceeEeecCCCCceeEEE----EcCccccccccccCCC----EEEEEcCCCcEEEEEC-----C--CCceechhhhcCccc
Confidence 8766443 223333 677 666 8999999887666442 1 111456677789999
Q ss_pred cEEEeecCCcceeeccccceeccccceec
Q 006808 352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|.+++|+|||. | ++++.|+.+++|++.
T Consensus 587 v~~l~~s~~~~-l-~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 587 VNNLLWETPST-L-VSSGADACIKRWNVV 613 (615)
T ss_dssp EEEEEEEETTE-E-EEEETTSCEEEEEEC
T ss_pred eEEEEEcCCCC-e-EEecCCceEEEEeee
Confidence 99999999999 8 999999999999985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=269.97 Aligned_cols=246 Identities=16% Similarity=0.211 Sum_probs=193.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCC--CcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.|++|+|||+.+ ++++..+.+|... +.+++|.++..
T Consensus 9 ~~~V--~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~------------------V~~v~~s~~~~-- 66 (297)
T 2pm7_B 9 NEMI--HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP------------------VWRVDWAHPKF-- 66 (297)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC------------------EEEEEECCGGG--
T ss_pred cCce--EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC------------------eEEEEecCCCc--
Confidence 4678 4559999999999999999999999974 3566677655544 45666654311
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCce--eEE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL--LGK 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~~--~~~ 154 (630)
+.+|++|+.||+|++||+.++. .+.. ..+|...|.+++|+|+ |.+|++++.|++|++||++++.. ...
T Consensus 67 -----g~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 67 -----GTILASCSYDGKVMIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp -----CSEEEEEETTTEEEEEEBSSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred -----CCEEEEEcCCCEEEEEEcCCCceEEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee
Confidence 6789999999999999999874 2323 3579999999999997 88999999999999999987632 456
Q ss_pred eecCCCCeEEEEEccC-------------CCEEEEeC--CeEEEEECCCCc----eeeEeecCCCCeEEEEEeeCC---c
Q 006808 155 FRASTKGISCMAVSSD-------------GKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG---K 212 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~-------------~~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~---~ 212 (630)
+.+|...|.+++|+|+ +++|++|+ ++|++||++++. ....+.+|...|.+++|+|++ .
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 7889999999999997 46899887 899999998765 566788999999999999985 7
Q ss_pred EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
+|++++ .|++|++||+...........+........+..+.|+ |+|.+|++++.||.|+||+..
T Consensus 221 ~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence 888877 7999999999875321001111112223345566676 999999999999999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=289.83 Aligned_cols=281 Identities=14% Similarity=0.084 Sum_probs=206.1
Q ss_pred ccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEE--ecccccccccccccccccccccccceeeEEecccccccc
Q 006808 5 NIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 5 ~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.| .|++|+| ++++||+|+.||+|+|||+.++..... +.+|.. .+++++|.|.+
T Consensus 121 ~V--~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~------------------~V~~l~f~p~~---- 176 (435)
T 4e54_B 121 RA--TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG------------------SITGLKFNPLN---- 176 (435)
T ss_dssp CE--EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC------------------CCCEEEECSSC----
T ss_pred CE--EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC------------------CEEEEEEeCCC----
Confidence 47 5669999 567999999999999999987764433 333333 46677777654
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEc-cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~-~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.+|++|+.||+|++||+.++...... ...+...+.+++|+|++.+|++|+.||.|++||+. ++.+..+.+|..
T Consensus 177 ----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~ 251 (435)
T 4e54_B 177 ----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKK 251 (435)
T ss_dssp ----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSS
T ss_pred ----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccc
Confidence 678999999999999999877553222 12344568899999999999999999999999986 566778899999
Q ss_pred CeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeE---eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK---FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 ~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~---~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.|.+++|+|++. ++++++ +.|++||+++++.... ..+|..+|++++|+|+|.+|++++ .|+.|++||+.++..
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWDC 330 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSSS
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCcc
Confidence 999999999876 666776 8999999988765433 357999999999999999999988 699999999988764
Q ss_pred ccceeeeeecCC------ceeeeeEEecCCccCCCCCEEEEEec------------CCcEEEEEcCCcccccccCceeEE
Q 006808 235 QSASCVLAMEHP------AVFMDCRCIDNGGVDDAGLYVLAISE------------TGVCYIWYGQNIEELRNTKATKIL 296 (630)
Q Consensus 235 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~~~~~ 296 (630)
. .....|. ...+.. .+. |++.++++++. ++.|++||..+++.+...
T Consensus 331 ~----~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l------ 394 (435)
T 4e54_B 331 P----LGLIPHPHRHFQHLTPIKA-AWH-----PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL------ 394 (435)
T ss_dssp E----EEECCCCCCCCSSSCCCBC-EEC-----SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE------
T ss_pred c----eEEecccccccccceeEEE-EEc-----CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE------
Confidence 3 1111111 111222 222 55555555532 235666666555432111
Q ss_pred eeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE-eecCCcceeeccccceeccc
Q 006808 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLKSKR 375 (630)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~~~~ 375 (630)
..+|...|.++ +|+|||.+| ++|+ |+.++
T Consensus 395 ------------------------------------------------~~~~~~~v~s~~~fspdg~~l-asg~-d~~i~ 424 (435)
T 4e54_B 395 ------------------------------------------------YDPESSGISSLNEFNPMGDTL-ASAM-GYHIL 424 (435)
T ss_dssp ------------------------------------------------CCSSCCCCCCEEEECTTSSCE-EEEC-SSEEE
T ss_pred ------------------------------------------------eCCCCCcEEEEEEECCCCCEE-EEEc-CCcEE
Confidence 11455667776 699999999 8887 78999
Q ss_pred cceecc
Q 006808 376 GRYVQN 381 (630)
Q Consensus 376 ~w~~~~ 381 (630)
+|++++
T Consensus 425 iW~~~~ 430 (435)
T 4e54_B 425 IWSQQE 430 (435)
T ss_dssp ECCCC-
T ss_pred EEECCc
Confidence 999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=281.25 Aligned_cols=304 Identities=15% Similarity=0.161 Sum_probs=231.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc------EEEEecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .+++|+| ++||+|+.||.|+||++.++. ....+.+|.. .+.++.|.+.
T Consensus 16 ~~~i--~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~ 73 (397)
T 1sq9_A 16 DADI--FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS------------------GLHHVDVLQA 73 (397)
T ss_dssp SSCE--EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT------------------CEEEEEEEEE
T ss_pred hcCe--EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC------------------cEEEEEEecc
Confidence 4688 5669999 799999999999999999887 5666654433 4667777764
Q ss_pred ccccccccCC---cEEEEEeCCCeEEEEEccCCee-----eEEccCCC-----CCCEEEEEEe----cCCCE-EEEEeCC
Q 006808 77 DRKKKRKLGS---SLLVLGTGGGDVLALAVSAGQL-----KWRLSDCH-----PGGVSAISFA----THGSC-IYSAGAD 138 (630)
Q Consensus 77 ~~~~~~~~~~---~~l~~~~~~g~v~iwd~~~~~~-----~~~~~~~h-----~~~v~~~~~s----~~g~~-l~s~~~d 138 (630)
... .+ .+|++++.+|.|++|++.+++. ...+ ..| ...|.+++|+ |++++ |++++.|
T Consensus 74 ~~~-----~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 74 IER-----DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp EET-----TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred ccc-----CCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 100 04 6899999999999999998875 5444 467 5899999999 99999 9999999
Q ss_pred CcEEEEeCCC------CceeE-----Eee-------cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec-
Q 006808 139 GMVCEIDPLT------GSLLG-----KFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG- 197 (630)
Q Consensus 139 g~v~iwd~~~------~~~~~-----~~~-------~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~- 197 (630)
|.|++||+.+ ++.+. .+. .|...|.+++|+|++ ++++++ |.|++||+++++.+..+..
T Consensus 148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 226 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ 226 (397)
T ss_dssp SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc
Confidence 9999999998 76666 774 478899999999999 999888 8999999999999999998
Q ss_pred --C---CCCeEEEEEeeCCcEEEEEeeCC---CeEEEEEcCCCccccceeeeeecC-------------CceeeeeEEec
Q 006808 198 --H---PGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEH-------------PAVFMDCRCID 256 (630)
Q Consensus 198 --h---~~~v~~l~~sp~~~~l~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 256 (630)
| ...|.+++|+|++++|++++ .| +.|++||+.+++.. ..+.. +...+..+.|+
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEE-----EEECBC--------CCBSBSSCEEEEEEC
T ss_pred ccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCccc-----ceeccCcccccccccccccCCcEEEEEEC
Confidence 9 99999999999999999988 58 99999999987633 22322 34455666676
Q ss_pred CCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcC
Q 006808 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL 336 (630)
Q Consensus 257 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~ 336 (630)
|++.+|++++.||.|++||+.+++.+....... ...... .- ...| .
T Consensus 301 -----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~--~~----~~~g--------------~ 346 (397)
T 1sq9_A 301 -----DSGETLCSAGWDGKLRFWDVKTKERITTLNMHC---------DDIEIE--ED----ILAV--------------D 346 (397)
T ss_dssp -----SSSSEEEEEETTSEEEEEETTTTEEEEEEECCG---------GGCSSG--GG----CCCB--------------C
T ss_pred -----CCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc---------Ccccch--hh----hhcc--------------c
Confidence 899999999999999999998876644332100 000000 00 0000 0
Q ss_pred ccCceeeEEeccCCCcEEEeecCCc----------ceeeccccceeccccceecc
Q 006808 337 LLKPSFQKILVNSGEDINLNCSQDG----------VLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 337 ~~~~~~~~~~~h~~~v~~~~~s~dg----------~~l~~s~s~d~~~~~w~~~~ 381 (630)
. .....|...|.+++|+|+| .+| ++++.|+.+++|++.+
T Consensus 347 ~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l-~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 347 E-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESL-CCVCLDRSIRWFREAG 395 (397)
T ss_dssp T-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE-EEEETTTEEEEEEEEC
T ss_pred c-----ccccccCCceeEEEeccccccccccccccceE-EEecCCCcEEEEEcCC
Confidence 0 0112578899999999999 688 9999999999999854
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=309.18 Aligned_cols=337 Identities=9% Similarity=0.005 Sum_probs=238.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+| |++||+++.|++|+|||+.+++++..+. +.. .+++++|.+.
T Consensus 58 ~~~V--~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~------------------~V~~v~~sp~------ 109 (902)
T 2oaj_A 58 RSAI--KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPG------------------KITSIDTDAS------ 109 (902)
T ss_dssp CCCE--EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSS------------------CEEEEECCTT------
T ss_pred CCCE--EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCC------------------CEEEEEECCC------
Confidence 3578 5559999 8899999999999999999999887774 222 3556666554
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeE----------EccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCce
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKW----------RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSL 151 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~----------~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~ 151 (630)
+.++++|+.+|.|++||+.++.... ....+|.++|++++|+|+ +..+++|+.||.| +||++++++
T Consensus 110 ---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~ 185 (902)
T 2oaj_A 110 ---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI 185 (902)
T ss_dssp ---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE
T ss_pred ---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce
Confidence 7889999999999999999887531 123579999999999996 4689999999999 999999999
Q ss_pred eEEeecC------------------CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE--e---ec---------
Q 006808 152 LGKFRAS------------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--F---SG--------- 197 (630)
Q Consensus 152 ~~~~~~~------------------~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~--~---~~--------- 197 (630)
+..+..| ...|.+++|+|+|.+|++++ |.|++||+++++++.. + .+
T Consensus 186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR 265 (902)
T ss_dssp EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence 8888765 46799999999999999998 8999999999887653 2 12
Q ss_pred ----CCCCeEEEEEee----CCcEEEEEeeCC-----CeEEEEEcCC------------------C--cc-c--------
Q 006808 198 ----HPGAVRFMTFSD----NGKYVLSSAVGE-----RYIALWRTDG------------------V--KK-Q-------- 235 (630)
Q Consensus 198 ----h~~~v~~l~~sp----~~~~l~~~~~~d-----~~i~vwd~~~------------------~--~~-~-------- 235 (630)
|..+|++++|++ ++..++++++.+ ..+++|++.. . .. .
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v 345 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPI 345 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCE
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCce
Confidence 345799999965 333444433234 2677776310 0 00 0
Q ss_pred ----------------------------cceeeeee-----------------cCCceeeeeEEec--------------
Q 006808 236 ----------------------------SASCVLAM-----------------EHPAVFMDCRCID-------------- 256 (630)
Q Consensus 236 ----------------------------~~~~~~~~-----------------~~~~~~~~~~~~~-------------- 256 (630)
.....+.+ .+.. .+.++.++
T Consensus 346 ~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~-~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 346 VNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP-LATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT-BEEEEEEEEEEHHHHHHHHHTT
T ss_pred EEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC-CeeEEEEEEcCHHHHHHHHhcc
Confidence 00000000 0000 11111110
Q ss_pred ---------------CCccCCCCCEEEEEecCCcEEEEEcCCccccc--------------ccCceeEEeeccCCCcccc
Q 006808 257 ---------------NGGVDDAGLYVLAISETGVCYIWYGQNIEELR--------------NTKATKILSSSEDVNSKSQ 307 (630)
Q Consensus 257 ---------------~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 307 (630)
...|+|++++|++|+.||+|++||+.++.... .+......+. |+|++
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva----fspdg 500 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS----FAAET 500 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE----EETTT
T ss_pred cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE----ecCCC
Confidence 01235899999999999999999998874311 1122233333 78998
Q ss_pred cchhhhhhhccccccccCCceeEEEEEcC-----------------c--------------------cCceeeEEeccCC
Q 006808 308 KSATAAIFAAKLQDIVKPASVHTFVAYGL-----------------L--------------------LKPSFQKILVNSG 350 (630)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~-----------------~--------------------~~~~~~~~~~h~~ 350 (630)
+ .+++|+.|+.+++|+..-...++. . -...+..+.+|.+
T Consensus 501 ~----~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~ 576 (902)
T 2oaj_A 501 L----ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG 576 (902)
T ss_dssp T----EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC
T ss_pred C----eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC
Confidence 8 999999999888876432100000 0 0023567778999
Q ss_pred CcEEEeecCCcceeeccccceeccccceeccc
Q 006808 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.|++++||||| +| ++|+.|+++++|++...
T Consensus 577 ~V~svafSpdG-~l-Asgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 577 KTSAINNSNIG-FV-GIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp SEEEEEECBTS-EE-EEEETTSEEEEEETTTT
T ss_pred cEEEEEecCCc-EE-EEEeCCCcEEEEECCCC
Confidence 99999999999 88 99999999999998653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=279.63 Aligned_cols=277 Identities=15% Similarity=0.188 Sum_probs=227.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|++ ..+++++.||.|++||+.+++....+.. .....+++++|.+. +.+
T Consensus 97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-----------------~~~~~v~~v~~s~~---------~~~ 148 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET-----------------DESTYVASVKWSHD---------GSF 148 (401)
T ss_dssp BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC-----------------CTTCCEEEEEECTT---------SSE
T ss_pred EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec-----------------CCCCCEEEEEECCC---------CCE
Confidence 4456665 5688888999999999999998776653 11335677888774 778
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~ 167 (630)
|++|+.+|.|++||+.+++.+..+. +|...|.+++|+ ++.|++++.||.|++||++ .+..+..+..|...|.+++|
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 225 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred EEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE
Confidence 9999999999999999998886664 799999999994 5799999999999999998 56778889999999999999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceeeeee
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
+|++.+|++++ +.|++||+.+++.+..+.+|...|.+++|+|++..++++++ .|+.|++||+.+++.. ..+
T Consensus 226 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----~~~ 300 (401)
T 4aez_A 226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----NTV 300 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----EEE
T ss_pred cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----EEE
Confidence 99999999998 89999999999999999999999999999998876666543 5999999999987633 333
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
.+.. .+..+.|+ |++.++++++ .||.|++|++.++....
T Consensus 301 ~~~~-~v~~~~~s-----~~~~~l~~~~g~~dg~i~v~~~~~~~~~~--------------------------------- 341 (401)
T 4aez_A 301 DAGS-QVTSLIWS-----PHSKEIMSTHGFPDNNLSIWSYSSSGLTK--------------------------------- 341 (401)
T ss_dssp ECSS-CEEEEEEC-----SSSSEEEEEECTTTCEEEEEEEETTEEEE---------------------------------
T ss_pred eCCC-cEEEEEEC-----CCCCeEEEEeecCCCcEEEEecCCcccee---------------------------------
Confidence 3443 35566666 8999999954 89999999975542110
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
...+.+|...|.+++|+|||.+| ++++.|+.+++|++.+
T Consensus 342 --------------------~~~~~~h~~~v~~~~~s~dg~~l-~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 342 --------------------QVDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRVYD 380 (401)
T ss_dssp --------------------EEEEECCSSCCCEEEECTTSSEE-EEECTTSEEEEEECCC
T ss_pred --------------------EEEecCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEECCC
Confidence 00234678899999999999999 9999999999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=266.87 Aligned_cols=240 Identities=19% Similarity=0.219 Sum_probs=198.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|+|++|++|+.|++|+|||+.+++.+..+.+|...+.++.|+++
T Consensus 65 ~~~v--~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~------------------------ 118 (319)
T 3frx_A 65 SHIV--QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK------------------------ 118 (319)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred cccE--EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC------------------------
Confidence 3567 55699999999999999999999999999999988877655554444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC------CCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH------GSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~------g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+.+|++|+.||.|++||+... .+..+ .+|...|.++.|+|. +..+++++.|+.|++||+.+++....+.
T Consensus 119 ---~~~l~s~s~D~~i~vwd~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 193 (319)
T 3frx_A 119 ---ASMIISGSRDKTIKVWTIKGQ-CLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193 (319)
T ss_dssp ---SCEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ---CCEEEEEeCCCeEEEEECCCC-eEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence 778999999999999999754 44344 479999999999985 4489999999999999999999999999
Q ss_pred cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+|...|.+++|+|++++|++++ |.|++||+.+++.+..+.. ...|.+++|+|++.++++++ ++.+++|++.....
T Consensus 194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~~ 270 (319)
T 3frx_A 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQYL 270 (319)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCee
Confidence 9999999999999999999998 8999999999999888875 46899999999999988765 55699999987643
Q ss_pred ccceeeeee------cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 235 QSASCVLAM------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 235 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
. ..+.. ......+..++|+ |+|++|++|+.||.|+|||+.++
T Consensus 271 ~---~~~~~~~~~~~~~~~~~v~~~~~s-----pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 271 V---DDLRPEFAGYSKAAEPHAVSLAWS-----ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp E---EEECCCCTTCCGGGCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEEC
T ss_pred e---eccCccccccccCcCcceeEEEEC-----CCCCEEEEeecCceEEEEEEeec
Confidence 2 11110 0112234456676 99999999999999999998764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=285.01 Aligned_cols=257 Identities=12% Similarity=0.166 Sum_probs=194.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc-----------EEEEecccccccccccccccccccccccceeeE
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (630)
.++| .+++|+|+|++||+|+.||.|+||++.++. ....+.+|........ .......++++
T Consensus 28 ~~~V--~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~------~~~~~~~V~~l 99 (447)
T 3dw8_B 28 ADII--STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLK------SLEIEEKINKI 99 (447)
T ss_dssp GGSE--EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGG------TEEECCCCCEE
T ss_pred cCcE--EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccc------cccccCceEEE
Confidence 3678 566999999999999999999999998877 4666665541110000 00002457788
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCCeee---------------------------------------EEc
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---------------------------------------WRL 112 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~---------------------------------------~~~ 112 (630)
.|.+... ...|++++.||.|++||+.++... ..+
T Consensus 100 ~~~~~~~-------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 100 RWLPQKN-------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp EECCCCS-------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred EEcCCCC-------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 8877631 268999999999999999875432 133
Q ss_pred cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeE-------EeecCCCCeEEEEEccCC-CEEEEeC--CeE
Q 006808 113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLG-------KFRASTKGISCMAVSSDG-KMLATAA--GQL 181 (630)
Q Consensus 113 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~p~~-~~l~~~~--g~i 181 (630)
..+|...|.+++|+|++++|++| .|+.|++||+.+ ++.+. .+..|...|.+++|+|++ .+|++++ |.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 46899999999999999999998 799999999984 44444 255788899999999998 8999988 899
Q ss_pred EEEECCCCce----eeEeecCCC------------CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC-Cccccceeeeeec
Q 006808 182 KTFNCSDHKK----MQKFSGHPG------------AVRFMTFSDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAME 244 (630)
Q Consensus 182 ~lwd~~~~~~----~~~~~~h~~------------~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~ 244 (630)
++||+++++. +..+.+|.. .|.+++|+|++++|++++ . +.|++||+.. ++.. ..+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~-----~~~~ 324 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPV-----ETYQ 324 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCS-----CCEE
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccc-----ceee
Confidence 9999999886 778888876 899999999999999877 5 9999999987 4422 1222
Q ss_pred CCceee---------------eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 245 HPAVFM---------------DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 245 ~~~~~~---------------~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.+.... ..++|+ |++.+|++|+.||.|++||+.+++.+
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s-----~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWN-----GSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEEC-----TTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccccccceEEEEC-----CCCCEEEEeccCCEEEEEEcCCCcce
Confidence 222111 125665 99999999999999999999888654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=308.94 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=166.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|+||+..+++....+. | ...+.+++|.+
T Consensus 17 ~~~V--~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~------------------~-~~~V~~l~fsp------- 68 (902)
T 2oaj_A 17 SSKP--IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE------------------D-RSAIKEMRFVK------- 68 (902)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS------------------S-CCCEEEEEEET-------
T ss_pred CCCc--EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC------------------C-CCCEEEEEEcC-------
Confidence 4578 566999999999999999999999998776654432 1 23577888876
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee----------
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---------- 152 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~---------- 152 (630)
+.+|++++.|+.|++||+.+++.+..+. |...|++++|+|++++|++|+.||+|++||+.++++.
T Consensus 69 ---g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~ 143 (902)
T 2oaj_A 69 ---GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS 143 (902)
T ss_dssp ---TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred ---CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence 3379999999999999999998876663 7789999999999999999999999999999988764
Q ss_pred -EEeecCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecC------------------CCCeEEEEEeeC
Q 006808 153 -GKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------------------PGAVRFMTFSDN 210 (630)
Q Consensus 153 -~~~~~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------------~~~v~~l~~sp~ 210 (630)
..+.+|..+|.+++|+|+ +..+++|+ |.| +||+++++.+..+.+| ...|++++|+|+
T Consensus 144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 234568889999999996 46788877 899 9999999988888765 467999999999
Q ss_pred CcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 211 GKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 211 ~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
|.+|++++ .|+.|++||+.+++.
T Consensus 223 g~~lasgs-~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 223 SLHIITIH-EDNSLVFWDANSGHM 245 (902)
T ss_dssp SSEEEEEE-TTCCEEEEETTTCCE
T ss_pred CCEEEEEE-CCCeEEEEECCCCcE
Confidence 99999988 699999999987653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=276.01 Aligned_cols=274 Identities=15% Similarity=0.252 Sum_probs=221.2
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++||++ ++||+|. |++|+|||..+|++...+..+ +| ...+++++|.+. +.+|
T Consensus 110 ~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~---------------~~-~~~V~sv~fspd---------g~~l 162 (420)
T 4gga_A 110 LVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQME---------------QP-GEYISSVAWIKE---------GNYL 162 (420)
T ss_dssp CEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECC---------------ST-TCCEEEEEECTT---------SSEE
T ss_pred eEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEec---------------CC-CCcEEEEEECCC---------CCEE
Confidence 3599976 4888776 899999999999988776522 11 235677888764 7889
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEEEc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~ 168 (630)
++|+.||.|++||+.+++.+..+ .+|...+.++.++ +..+++|+.|+.+++||.... ..+..+.+|...+..+.|+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999999999988666 5799999998875 679999999999999998864 5567789999999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCc----eeeEeecCCCCeEEEEEeeCCcEEEE--EeeCCCeEEEEEcCCCccccceee
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGKYVLS--SAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~~l~~--~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
|++.++++++ +.+++|+..+++ .+..+..|...|.+++|+|.+..+++ +++.|++|++||+.++...
T Consensus 240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----- 314 (420)
T 4gga_A 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----- 314 (420)
T ss_dssp TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-----
T ss_pred CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-----
Confidence 9999999988 899999998765 35567789999999999997765443 2346899999999988633
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
..+.....+..+. +. |++..+++++ .||.|+|||+.+++.+.
T Consensus 315 ~~~~~~~~v~~~~-~~-----~~~~~lv~~sg~~d~~I~iwd~~~~~~v~------------------------------ 358 (420)
T 4gga_A 315 SAVDAHSQVCSIL-WS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA------------------------------ 358 (420)
T ss_dssp EEEECSSCEEEEE-EE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE------------------------------
T ss_pred eeeccccceeeee-ec-----CCCCeEEEEEecCCCEEEEEECCCCcEEE------------------------------
Confidence 3344444454444 44 7888887765 68999999987654321
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.+|.+.|++++|+|||.+| +|||.|+++++|++.
T Consensus 359 -------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 359 -------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 394 (420)
T ss_dssp -------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred -------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 334788999999999999999 999999999999984
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=277.08 Aligned_cols=300 Identities=12% Similarity=0.064 Sum_probs=228.1
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+| +|++||+|+.||.|+|||+.++.....+........ .... ..+| ...+.++.|.+.+
T Consensus 43 ~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~---~~~~-~~~v~~~~~~~~~---- 111 (408)
T 4a11_B 43 GGGI--NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSI-GRDH---PDVH-RYSVETVQWYPHD---- 111 (408)
T ss_dssp SSCE--EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEE-CTTC---TTCC-SSCEEEEEECTTC----
T ss_pred CCcE--EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccc-cccc---cccC-CCcEEEEEEccCC----
Confidence 5688 5669999 999999999999999999998765543321100000 0000 0123 3467888888754
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
+.+|++++.+|.|++||+.+++....+. +...+.++.|+|. +.++++++.|+.|++||+.+++.+..+..|
T Consensus 112 ----~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 185 (408)
T 4a11_B 112 ----TGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH 185 (408)
T ss_dssp ----TTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC
T ss_pred ----CcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC
Confidence 6789999999999999999998876663 7788999999984 448999999999999999999999999999
Q ss_pred CCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCc-eeeEe---------------ecCCCCeEEEEEeeCCcEEEEEee
Q 006808 159 TKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHK-KMQKF---------------SGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 159 ~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~-~~~~~---------------~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
...|.+++|+|++. ++++++ |.|++||++++. .+..+ .+|...|.+++|+|++++|++++
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 264 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG- 264 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec-
Confidence 99999999999998 477776 899999998765 33333 57889999999999999999988
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeec
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS 299 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 299 (630)
.|+.|++||+.+++....................... ..+..+++++.+|.|++||+.+++.+.
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~----------- 328 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-----GCSSEFVFVPYGSTIAVYTVYSGEQIT----------- 328 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-----SSSSCEEEEEETTEEEEEETTTCCEEE-----------
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEec-----CCCceEEEEecCCEEEEEECcCCccee-----------
Confidence 6999999999987643111101111111122222222 345667778889999999987654321
Q ss_pred cCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 300 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.+.+|...|.+++|+|+|.+| ++++.|+.+++|++
T Consensus 329 --------------------------------------------~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~ 363 (408)
T 4a11_B 329 --------------------------------------------MLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWVP 363 (408)
T ss_dssp --------------------------------------------EECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEEE
T ss_pred --------------------------------------------eeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEeC
Confidence 223677889999999999999 99999999999998
Q ss_pred cc
Q 006808 380 QN 381 (630)
Q Consensus 380 ~~ 381 (630)
..
T Consensus 364 ~~ 365 (408)
T 4a11_B 364 SL 365 (408)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=269.16 Aligned_cols=236 Identities=13% Similarity=0.187 Sum_probs=196.5
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc------EEEEecccccccccccccccccccccccceeeEEecccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
..| .+++|+|+|.+||+|+.|+.+++|++.... ....+.+|.. .+.++.|.+.
T Consensus 107 ~~v--~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~- 165 (354)
T 2pbi_B 107 TWV--MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN------------------YLSACSFTNS- 165 (354)
T ss_dssp SCC--CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS------------------CEEEEEECSS-
T ss_pred CCE--EEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC------------------cEEEEEEeCC-
Confidence 456 566999999999999999999999986432 2223332322 4556666654
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
+..|++|+.||.|++||+.+++.+..+ .+|...|.+++|+| +|++|++|+.||+|++||+++++++..+
T Consensus 166 --------~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~ 236 (354)
T 2pbi_B 166 --------DMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236 (354)
T ss_dssp --------SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred --------CCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 667999999999999999999988666 47999999999987 5789999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|...|.+++|+|++.+|++++ ++|++||+++++.+..+..+ ...+.+++|+|++++|++++ .|+.|++||+.+
T Consensus 237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~ 315 (354)
T 2pbi_B 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK 315 (354)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Confidence 99999999999999999999998 89999999998877766543 35789999999999999988 699999999988
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
+... ..+..+...+.++.|+ |+|.+|++|+.||.|+||+
T Consensus 316 ~~~~-----~~l~~h~~~v~~l~~s-----pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 316 GSRV-----SILFGHENRVSTLRVS-----PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSEE-----EEECCCSSCEEEEEEC-----TTSSCEEEEETTSEEEEEC
T ss_pred CceE-----EEEECCCCcEEEEEEC-----CCCCEEEEEcCCCCEEecC
Confidence 7633 2333344456667777 9999999999999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=275.06 Aligned_cols=248 Identities=16% Similarity=0.197 Sum_probs=198.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc-------EEEEecccccccccccccccccccccccceeeEEecc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
...| .+++|+|+|++||+|+.|+.++||++.+.. ....+.+|.+. +.++.|.+
T Consensus 108 ~~~v--~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~------------------v~~~~~~~ 167 (380)
T 3iz6_a 108 CPWV--MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY------------------ASSCQYVP 167 (380)
T ss_dssp CTTC--CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC------------------CCCCBCCS
T ss_pred CCCE--EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc------------------eEEEEEec
Confidence 3467 556999999999999999999999987542 12223333333 33445554
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEc----cCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCC-CC
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TG 149 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~----~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~-~~ 149 (630)
.+ +..|++|+.|+.|++||+.+++.+..+ ..+|...|.+++|++ ++++|++|+.|++|++||++ .+
T Consensus 168 ~~--------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 168 DQ--------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp SS--------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred CC--------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 43 556999999999999999999877544 257999999999987 88999999999999999998 55
Q ss_pred ceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-------CCeEEEEEeeCCcEEEEEeeC
Q 006808 150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-------~~v~~l~~sp~~~~l~~~~~~ 220 (630)
+++..+.+|...|.+++|+|++.+|++++ |+|++||+++++.+..+..+. ..|++++|+|+|++|++++ .
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~ 318 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-S 318 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-T
T ss_pred cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-C
Confidence 78889999999999999999999999998 899999999999888776543 2489999999999999987 6
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
|+.|++||+..++....... ....+...+.++.|+ |+|.+|++|+.||.|+||++...+
T Consensus 319 dg~i~vwd~~~~~~~~~~~~-~~~~h~~~v~~l~~s-----~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 319 NGDCYVWDTLLAEMVLNLGT-LQNSHEGRISCLGLS-----SDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TSCEEEEETTTCCEEEEECC-SCSSCCCCCCEEEEC-----SSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCEEEEECCCCceEEEEec-ccCCCCCceEEEEEC-----CCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999987763310000 112344556777777 999999999999999999987654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=293.97 Aligned_cols=313 Identities=15% Similarity=0.148 Sum_probs=237.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC----cEEEEecccccccccccccccccccccccceeeEEeccc-c
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-D 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~-~ 77 (630)
.+.| .+++|+|+|++||+++ ++.|+||++.++ +....+.+|... .+++++|.|. +
T Consensus 18 ~~~v--~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~-----------------~v~~~~~sp~~~ 77 (615)
T 1pgu_A 18 RNFT--THLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSS-----------------VVTTVKFSPIKG 77 (615)
T ss_dssp TTCC--CCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTS-----------------CEEEEEECSSTT
T ss_pred cCce--eEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCc-----------------eEEEEEECcCCC
Confidence 4667 4559999999999998 789999999998 788888755544 1455666551 1
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCC--------eeeEEccCCCCCCEEEEEEecCCCEEEEEeCC----CcEEEEe
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAG--------QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEID 145 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--------~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----g~v~iwd 145 (630)
+.+|++|+.+|.|++||+.++ .....+ .+|..+|.+++|+|++++|++++.+ +.|++||
T Consensus 78 --------~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d 148 (615)
T 1pgu_A 78 --------SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 148 (615)
T ss_dssp --------CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT
T ss_pred --------CCEEEEecCCCEEEEEeCCCCcccccccccccchh-hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE
Confidence 788999999999999999755 444343 4699999999999999999999987 6888888
Q ss_pred CCCCceeEEeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeEeecCCC---CeEEEEEeeC-CcEEEEEe
Q 006808 146 PLTGSLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPG---AVRFMTFSDN-GKYVLSSA 218 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~~~~h~~---~v~~l~~sp~-~~~l~~~~ 218 (630)
.++.+..+..|...|.+++|+|++. ++++++ +.|++||+.+++.+..+.+|.. .|++++|+|+ +++|++++
T Consensus 149 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 149 --SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp --TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred --CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence 6788889999999999999999997 677777 8999999999999999999999 9999999999 99999988
Q ss_pred eCCCeEEEEEcCCCccccceeeeee-----cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAM-----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.|+.|++||+.+++.. ..+ .|.. .+..+.| + ++.+|++++.||.|++||+.+++.+......
T Consensus 227 -~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~-~v~~~~~-----~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 227 -SDRKISCFDGKSGEFL-----KYIEDDQEPVQG-GIFALSW-----L-DSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp -TTCCEEEEETTTCCEE-----EECCBTTBCCCS-CEEEEEE-----S-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred -CCCeEEEEECCCCCEe-----EEecccccccCC-ceEEEEE-----c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 6999999999887643 233 3443 3445555 2 6899999999999999999988766544322
Q ss_pred -----eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccc
Q 006808 294 -----KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ 368 (630)
Q Consensus 294 -----~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~ 368 (630)
...... .+ +++. .+++++.++.+++++.. ....+..+.+|...|.+++| |+ + +++
T Consensus 294 ~~~~~~~~~~~--~~-~~~~----~l~~~~~~g~i~~~d~~--------~~~~~~~~~~~~~~v~~~~~-~~---l-~~~ 353 (615)
T 1pgu_A 294 KQQLGNQQVGV--VA-TGNG----RIISLSLDGTLNFYELG--------HDEVLKTISGHNKGITALTV-NP---L-ISG 353 (615)
T ss_dssp TTCGGGCEEEE--EE-EETT----EEEEEETTSCEEEEETT--------EEEEEEEECCCSSCEEEEET-TT---T-EEE
T ss_pred CCcccCceeEE--Ee-CCCC----eEEEEECCCCEEEEECC--------CCcEEEEEeCCCCCEEEEEe-cC---c-EEE
Confidence 111111 02 2333 78888888876665422 12333455566666666666 55 3 555
Q ss_pred cceecccccee
Q 006808 369 SLLKSKRGRYV 379 (630)
Q Consensus 369 s~d~~~~~w~~ 379 (630)
+.|+.+++|++
T Consensus 354 ~~dg~i~~w~~ 364 (615)
T 1pgu_A 354 SYDGRIMEWSS 364 (615)
T ss_dssp ETTSCEEETTT
T ss_pred CCCCeEEEEEc
Confidence 55666666654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=262.68 Aligned_cols=272 Identities=19% Similarity=0.219 Sum_probs=220.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++| |++++||+|+.||.|+|||+.++.....+..|... +.++.|.+.
T Consensus 18 ~~~v--~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~------------------v~~~~~~~~------ 70 (313)
T 3odt_A 18 DQDV--RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF------------------LNSVCYDSE------ 70 (313)
T ss_dssp SSCE--EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSC------------------EEEEEEETT------
T ss_pred CCCc--EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCcc------------------EEEEEECCC------
Confidence 4678 55599 99999999999999999999999888877755444 445555553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCC---eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+.++++|+.+|.|++|++... +....+ .+|...|.++.| +++++++++.||.|++|| .++....+..|.
T Consensus 71 ---~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~ 142 (313)
T 3odt_A 71 ---KELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN 142 (313)
T ss_dssp ---TTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS
T ss_pred ---CCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC
Confidence 788999999999999998765 333333 579999999999 577999999999999999 778888899999
Q ss_pred CCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeec-CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 160 ~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
..+.+++|.| ++.++++++ |.|++|| .++....+.. |...+.+++|+|++. +++++ .|+.|++||+.+++..
T Consensus 143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 143 ASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDVL 218 (313)
T ss_dssp SCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCEE
T ss_pred CceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhhh
Confidence 9999999998 889999888 8999999 4566777776 899999999999998 77776 6999999999987633
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhh
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (630)
..+..+...+..+.|+ |++ .|++++.||.|++||+.+++.+.
T Consensus 219 -----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~dg~v~iwd~~~~~~~~--------------------------- 260 (313)
T 3odt_A 219 -----RTYEGHESFVYCIKLL-----PNG-DIVSCGEDRTVRIWSKENGSLKQ--------------------------- 260 (313)
T ss_dssp -----EEEECCSSCEEEEEEC-----TTS-CEEEEETTSEEEEECTTTCCEEE---------------------------
T ss_pred -----hhhhcCCceEEEEEEe-----cCC-CEEEEecCCEEEEEECCCCceeE---------------------------
Confidence 3333344456667776 888 68999999999999986653211
Q ss_pred hccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+..|...|.+++|+|+|.+ ++++.|+.+++|++.+
T Consensus 261 ----------------------------~~~~~~~~i~~~~~~~~~~~--~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 261 ----------------------------VITLPAISIWSVDCMSNGDI--IVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ----------------------------EEECSSSCEEEEEECTTSCE--EEEETTSCEEEEESCG
T ss_pred ----------------------------EEeccCceEEEEEEccCCCE--EEEeCCCcEEEEeCCC
Confidence 22356668999999999995 5688899999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=286.75 Aligned_cols=316 Identities=12% Similarity=0.129 Sum_probs=221.9
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCC---CcE---EEEecccccccccccccccccccccccceeeEEecc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK---GQV---QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~---~~~---~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
.++| .+++|+| +|++||+|+.||+|+|||+.+ +.. ...+ +| ...+.+++|.+
T Consensus 63 ~~~V--~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~------------------~h-~~~v~~~~~~~ 121 (437)
T 3gre_A 63 PNSI--TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY------------------DC-SSTVTQITMIP 121 (437)
T ss_dssp TSCE--EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE------------------EC-SSCEEEEEECT
T ss_pred CCce--EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec------------------cC-CCCEEEEEEeC
Confidence 4688 5569999 999999999999999999876 331 1111 11 33577888876
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEcc---CCeeeEEc--------c-CC--CCCCEEEEE--EecCCCEEEEEeCCC
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVS---AGQLKWRL--------S-DC--HPGGVSAIS--FATHGSCIYSAGADG 139 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~---~~~~~~~~--------~-~~--h~~~v~~~~--~s~~g~~l~s~~~dg 139 (630)
. +.+|++|+.||.|++||+. +++..... . .. +...+.++. +++++.+|++++.|+
T Consensus 122 ~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 122 N---------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192 (437)
T ss_dssp T---------SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred C---------CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence 4 7789999999999999994 44333211 1 11 566777777 557899999999999
Q ss_pred cEEEEeCCCCceeEEeec--CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEee----C
Q 006808 140 MVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSD----N 210 (630)
Q Consensus 140 ~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp----~ 210 (630)
.|++||+++++++..+.. |...|++++|+|++.+|++++ |.|++||+++++++..+. .|..+|++++|+| +
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence 999999999999999998 788999999999999999998 899999999999988886 7888999996654 6
Q ss_pred CcEEEEEeeCCCeEEEEEcCCCccccceeeeeec------------------------CCceeeeeEEecCCccCCCCCE
Q 006808 211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAME------------------------HPAVFMDCRCIDNGGVDDAGLY 266 (630)
Q Consensus 211 ~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
+.+|++++ .|+.|++||+.+++.. ..+... .+...+.+++|+ ++.+
T Consensus 273 ~~~l~s~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------~~~~ 342 (437)
T 3gre_A 273 SVIVVGGS-SKTFLTIWNFVKGHCQ---YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------NDKI 342 (437)
T ss_dssp EEEEEEES-TTEEEEEEETTTTEEE---EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------TTEE
T ss_pred ccEEEEEc-CCCcEEEEEcCCCcEE---EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------CceE
Confidence 77888877 6999999999887633 111100 022234445553 5689
Q ss_pred EEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEE-cCccCceeeEE
Q 006808 267 VLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSFQKI 345 (630)
Q Consensus 267 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~-g~~~~~~~~~~ 345 (630)
|++|+.||.|++||+.+++.+............ +.+. .... ........ .......+...
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDV---FIPT-----------QVTA-----NLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCE---EEEE-----------EEET-----TEEEEEEECC----------
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCce---EEEE-----------Eeec-----ceEEEEEecccccccccCcc
Confidence 999999999999999998776544322100000 0000 0000 00110000 01111222344
Q ss_pred eccCCCcEEEeecCC--cceeeccccceeccccce
Q 006808 346 LVNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 346 ~~h~~~v~~~~~s~d--g~~l~~s~s~d~~~~~w~ 378 (630)
..|...|.+++|+++ +.+| +||+.||.+++|+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l-~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLL-VACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEE-EEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEE-EEEcCCceEEEeC
Confidence 569999999999998 7788 9999999999995
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-31 Score=264.54 Aligned_cols=279 Identities=12% Similarity=0.179 Sum_probs=220.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++|++++ ||.|++||+.++.....+.... .......+.++.|.+.
T Consensus 51 ~~~v--~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~------ 108 (337)
T 1gxr_A 51 GEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD-------------CLNRDNYIRSCKLLPD------ 108 (337)
T ss_dssp SSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE-------------CSCTTSBEEEEEECTT------
T ss_pred CCce--EEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc-------------ccCCCCcEEEEEEcCC------
Confidence 4678 5559999999999999 9999999998776432221000 0011335677777764
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.+|++++.+|.|++||+.+++. .......|...|.+++|+|+++++++++.||.|++||+.+++.+..+..|...
T Consensus 109 ---~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~ 185 (337)
T 1gxr_A 109 ---GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185 (337)
T ss_dssp ---SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred ---CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCc
Confidence 77899999999999999998873 12333478899999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
+.+++|+|++.+|++++ |.|++||+++++.+..+. |...+.+++|+|+++++++++ .++.|++|++.+.+..
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~---- 259 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKY---- 259 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEE----
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeE----
Confidence 99999999999999987 899999999998887775 788999999999999999987 6999999999887532
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc--CceeEEeeccCCCcccccchhhhhhhc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT--KATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
....+...+..+.|+ |++.+|++++.||.|++|++.+++.+... ......+. ++++++ .++++
T Consensus 260 --~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~----~l~~~ 324 (337)
T 1gxr_A 260 --QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD----ISVDDK----YIVTG 324 (337)
T ss_dssp --EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE----ECTTSC----EEEEE
T ss_pred --EEcCCccceeEEEEC-----CCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEE----ECCCCC----EEEEe
Confidence 233334445666666 89999999999999999999988766432 22222222 577776 88888
Q ss_pred cccccccCCc
Q 006808 318 KLQDIVKPAS 327 (630)
Q Consensus 318 ~~d~~~~~~~ 327 (630)
+.++.+++|+
T Consensus 325 ~~dg~i~iw~ 334 (337)
T 1gxr_A 325 SGDKKATVYE 334 (337)
T ss_dssp ETTSCEEEEE
T ss_pred cCCCeEEEEE
Confidence 8888666543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=267.84 Aligned_cols=243 Identities=11% Similarity=0.113 Sum_probs=184.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCC-------CcEEEEecccccccccccccccccccccccceeeEEecc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
.++| .+++|+|+|++||+|+.|++|+|||+.. ...+..+.+|... +.+++|.|
T Consensus 58 ~~~v--~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~------------------V~~v~~sp 117 (330)
T 2hes_X 58 KKAI--RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE------------------VKGVAWSN 117 (330)
T ss_dssp CSCE--EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C------------------EEEEEECT
T ss_pred cCCE--EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc------------------EEEEEECC
Confidence 3568 5559999999999999999999999853 3445555555443 45566655
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCC----eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-- 149 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-- 149 (630)
. +.+|++|+.||.|++||+... +++ ....+|...|.+++|+|++.+|++++.|++|++||+.++
T Consensus 118 ~---------g~~las~s~D~~v~iwd~~~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 118 D---------GYYLATCSRDKSVWIWETDESGEEYECI-SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp T---------SCEEEEEETTSCEEEEECCTTCCCCEEE-EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE
T ss_pred C---------CCEEEEEeCCCEEEEEeccCCCCCeEEE-EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe
Confidence 3 788999999999999999532 333 334589999999999999999999999999999998776
Q ss_pred ceeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCC--------ceeeEeec-CCCCeEEEEEeeCCcEEEE
Q 006808 150 SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--------KKMQKFSG-HPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 150 ~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~--------~~~~~~~~-h~~~v~~l~~sp~~~~l~~ 216 (630)
+++..+.+|...|.+++|+|+ +.+|++++ ++|++||+.++ .+...+.+ |...|.+++|++++ +|++
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s 266 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS 266 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEE
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEE
Confidence 678889999999999999998 67888887 89999998764 34445554 89999999999765 7777
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC--CCCEEEEEecCCcEEEEEcCC
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD--AGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~ 283 (630)
++ .|+.|++|+...+... ........|....+.++.|+ | ++.+|++|+.||.|+||++..
T Consensus 267 ~~-~dg~v~iw~~~~~~~~-~~~~~~~~h~~~~v~~v~~~-----~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 267 VG-ADGVLAVYEEVDGEWK-VFAKRALCHGVYEINVVKWL-----ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EE-TTSCEEEEEEETTEEE-EEEEESCTTTTSCEEEEEEC----------CCEEEEETTSEEEEEEC--
T ss_pred Ee-CCCEEEEEEcCCCceE-EEeccccccccceEEEEEEe-----cCCCceEEEEecCCCcEEEEEecc
Confidence 77 6999999998766321 00111223444355666666 6 688999999999999999754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=267.27 Aligned_cols=252 Identities=15% Similarity=0.206 Sum_probs=194.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.|++|+||+..++. ++..+.+|... +.+++|.|.
T Consensus 61 ~~~v--~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~------------------v~~v~~sp~---- 116 (345)
T 3fm0_A 61 QRTV--RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE------------------VKSVAWAPS---- 116 (345)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC------------------EEEEEECTT----
T ss_pred CCcE--EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC------------------ceEEEEeCC----
Confidence 3567 555999999999999999999999988764 45666655544 445555553
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEee
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR 156 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~ 156 (630)
+.+|++|+.||.|++||+.++.. ......+|...|.+++|+|++++|++++.|++|++||+.+++ +...+.
T Consensus 117 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 117 -----GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp -----SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred -----CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence 78899999999999999987642 224446899999999999999999999999999999998775 456788
Q ss_pred cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC---------------ceeeEeec-CCCCeEEEEEeeCCcEEEEEe
Q 006808 157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---------------KKMQKFSG-HPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~---------------~~~~~~~~-h~~~v~~l~~sp~~~~l~~~~ 218 (630)
+|...|.+++|+|+|++|++++ ++|++|+.... +++..+.+ |...|.+++|+|++..|++++
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 9999999999999999999998 89999996321 23444544 888999999999999999988
Q ss_pred eCCCeEEEEEcCCCccccc-ee---eeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccccc
Q 006808 219 VGERYIALWRTDGVKKQSA-SC---VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
.|+.|++|+......... .. ......+...+.++.|+ |++ .+|++|+.||.|++|+..+.+.+..
T Consensus 272 -~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~-----p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 272 -GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-----PKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp -TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEEECC------
T ss_pred -CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe-----CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 699999999876532110 00 11112334456666776 877 5999999999999999988776543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=279.77 Aligned_cols=304 Identities=12% Similarity=0.190 Sum_probs=232.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
++++++++|++|+.||+|++||+.+++.+..+.+|...+ .++.|.+ ...+++
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V------------------~~l~~~~----------~~~l~s 178 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV------------------WALKYAH----------GGILVS 178 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------------------EEEEECS----------TTEEEE
T ss_pred EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCE------------------EEEEEcC----------CCEEEE
Confidence 345577899999999999999999999999888665544 4555543 237999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEEeCCCcEEEEeCCCCce------------------
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLTGSL------------------ 151 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~v~iwd~~~~~~------------------ 151 (630)
|+.||.|++||+.+++.+..+ .+|...|.+++|+ +++.++++++.||+|++||+.++..
T Consensus 179 ~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 257 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257 (464)
T ss_dssp EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred EeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence 999999999999999988665 4799999999998 4778999999999999999987653
Q ss_pred -----eEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 152 -----LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 152 -----~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
+..+.+|...+.++ +|++.++++++ |.|++||+.+++.+..+.+|...|.+++|+|+++++++++ .|+.|
T Consensus 258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i 334 (464)
T 3v7d_B 258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTI 334 (464)
T ss_dssp GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcE
Confidence 45667788888776 67788999988 8999999999999999999999999999999999999988 69999
Q ss_pred EEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc--eeEEeeccCC
Q 006808 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA--TKILSSSEDV 302 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~ 302 (630)
++||+.+++. ...+..+...+..+.++ +.+|++++.||.|++||+.++........ ......
T Consensus 335 ~vwd~~~~~~-----~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---- 398 (464)
T 3v7d_B 335 RIWDLENGEL-----MYTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT---- 398 (464)
T ss_dssp EEEETTTTEE-----EEEECCCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEE----
T ss_pred EEEECCCCcE-----EEEEeCCCCcEEEEEEc-------CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEE----
Confidence 9999998763 33444444455566653 68999999999999999988765433211 111111
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeE-EeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK-ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
++++++ .+++++ ++.+++|+ ......+.. +..|...|.+++|+ +..++++++.|+.+.+|-
T Consensus 399 ~~~~~~----~l~~~~-dg~i~iwd--------~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 399 FYVSDN----ILVSGS-ENQFNIYN--------LRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEECSS----EEEEEE-TTEEEEEE--------TTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEeCCC----EEEEec-CCeEEEEE--------CCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEE
Confidence 455555 666666 77655543 222222322 44688899999997 444436667676665554
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=264.96 Aligned_cols=243 Identities=13% Similarity=0.170 Sum_probs=192.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...+.++.|+|+
T Consensus 76 ~~~V--~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~------------------------ 129 (343)
T 2xzm_R 76 NHFV--SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD------------------------ 129 (343)
T ss_dssp SSCE--EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS------------------------
T ss_pred CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC------------------------
Confidence 3567 55599999999999999999999999999999988877665554444444
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEc--cCCCCCCEEEEEEecCC----------CEEEEEeCCCcEEEEeCCCCc
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG----------SCIYSAGADGMVCEIDPLTGS 150 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~--~~~h~~~v~~~~~s~~g----------~~l~s~~~dg~v~iwd~~~~~ 150 (630)
+.+|++|+.||.|++||+...... .. ..+|...|.+++|+|++ .+|++++.|+.|++|| ..++
T Consensus 130 ---~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~ 204 (343)
T 2xzm_R 130 ---NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQ 204 (343)
T ss_dssp ---TTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTE
T ss_pred ---CCEEEEEcCCCEEEEEeccCCcee-eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCc
Confidence 778999999999999999854332 22 23688999999999987 7899999999999999 4577
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC-CceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
....+.+|...|.+++|+|+|++|++++ |.|++||+.+ ......+. +...|.+++|+|++.++++ + .|+.|++|
T Consensus 205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~-~-~d~~v~iw 281 (343)
T 2xzm_R 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAV-G-TDQGVKIF 281 (343)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEE-E-ESSCEEEE
T ss_pred eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEE-E-CCCCEEEE
Confidence 7788999999999999999999999998 8999999954 44444443 5667999999999987764 4 38889999
Q ss_pred EcCCCccccceeeeee---------cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 228 RTDGVKKQSASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
++.+.+... .+.+.. ..+...+..+.|+ |+|.+|++|+.||.|++|++.++.
T Consensus 282 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 282 NLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWN-----ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp ESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEEC-----SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEEC-----CCCCeEEEecCCceEEEEEEEccC
Confidence 998765431 011110 0223345666776 999999999999999999987653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=270.69 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=186.9
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
+.| .+++|+|++.+ ++++.||+|+|||+.+++........ ..+| ...+.+++|.+.
T Consensus 95 ~~V--~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~-------------~~~h-~~~V~~v~~spd------- 150 (357)
T 4g56_B 95 AGV--TDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFA-------------KYEH-DDIVKTLSVFSD------- 150 (357)
T ss_dssp SCE--EEEEEETTTEE-EEEETTSCEEEC--------CCCCEE-------------ECCC-SSCEEEEEECSS-------
T ss_pred CCE--EEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeec-------------cCCC-CCCEEEEEECCC-------
Confidence 457 56699999865 46778999999999888754322100 0123 235667777664
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEee--cCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR--ASTK 160 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~ 160 (630)
+.+|++|+.+|.|++||+.+++.+..+ .+|...|++++|+|++. ++++++.||+|++||++++++...+. .+..
T Consensus 151 --g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~ 227 (357)
T 4g56_B 151 --GTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227 (357)
T ss_dssp --SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred --CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence 778999999999999999999988666 47999999999999875 68999999999999999998776654 4566
Q ss_pred CeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCc-EEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.+.+++|+|+ +.+|++|+ +.|++||+++++.+.++.+|...|++++|+|++. +|++++ .|++|+|||+.+++.
T Consensus 228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~~-- 304 (357)
T 4g56_B 228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFSEV-- 304 (357)
T ss_dssp CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSCEE--
T ss_pred cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCCcE--
Confidence 8999999997 46777776 8999999999999999999999999999999985 566666 799999999988763
Q ss_pred ceeeeeecCCceeeeeEEecCCccCC-CCCEEEEEecCCcEEEEEcCCc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
...+.|... +..++|+ | ++.+|++++.||.|++|++.+.
T Consensus 305 ---~~~~~H~~~-V~~vafs-----P~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 305 ---FRDLSHRDF-VTGVAWS-----PLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ---EEECCCSSC-EEEEEEC-----SSSTTEEEEEETTSCEEEEECC--
T ss_pred ---eEECCCCCC-EEEEEEe-----CCCCCEEEEEcCCCeEEEEECCCC
Confidence 334455554 5566666 7 7899999999999999998654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-30 Score=256.74 Aligned_cols=274 Identities=15% Similarity=0.242 Sum_probs=216.3
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++||+++ +||+|. |++|+|||+.+|+++..+..+ +| ...+++++|.+. +.+|
T Consensus 30 ~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~---------------~~-~~~V~~v~~~~~---------~~~l 82 (318)
T 4ggc_A 30 LVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQME---------------QP-GEYISSVAWIKE---------GNYL 82 (318)
T ss_dssp CEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECC---------------ST-TCCEEEEEECTT---------SSEE
T ss_pred EEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEec---------------CC-CCeEEEEEECCC---------CCEE
Confidence 35999986 777765 899999999999998877532 11 234667777665 7889
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCCeEEEEEc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~ 168 (630)
++|+.||.|++|++.+++.+..+ .+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+.++.++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 99999999999999999988666 479888887665 5679999999999999998865 5566788899999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCce----eeEeecCCCCeEEEEEeeCCcEEE--EEeeCCCeEEEEEcCCCccccceee
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVL--SSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~--~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
+++.++++++ +.|++||+.+++. ......|.+.|.++.++|++..++ .+++.++.|++|+.......
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----- 234 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----- 234 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----
Confidence 9999999988 8999999988753 344567888999999999876544 23446889999999887633
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
....+...+ ....+. |++..+++++ .||.|+|||+.+++.+.
T Consensus 235 ~~~~~~~~v-~~~~~~-----~~~~~~~~~sg~~d~~i~iwd~~~~~~~~------------------------------ 278 (318)
T 4ggc_A 235 SAVDAHSQV-CSILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA------------------------------ 278 (318)
T ss_dssp EEEECSSCE-EEEEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE------------------------------
T ss_pred ccccceeee-eeeeec-----ccccceEEEEEcCCCEEEEEECCCCcEEE------------------------------
Confidence 223333333 344454 7777777654 69999999987654321
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.+|.+.|.+++|+|||.+| +|||.|+++++|++.
T Consensus 279 -------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 279 -------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF 314 (318)
T ss_dssp -------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred -------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence 334788899999999999999 999999999999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=298.88 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=247.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+ +++.|.+.
T Consensus 55 ~~~v--~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v------------------~~~~~s~~------ 108 (814)
T 3mkq_A 55 ETPV--RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI------------------RSIAVHPT------ 108 (814)
T ss_dssp SSCE--EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE------------------EEEEECSS------
T ss_pred CCcE--EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCE------------------EEEEEeCC------
Confidence 4678 555999999999999999999999999999998887665544 45555543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-C
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-K 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~ 160 (630)
+.+|++++.+|.|++||+.++........+|...|.+++|+| ++..|++++.||.|++||+.+++....+..+. .
T Consensus 109 ---~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 185 (814)
T 3mkq_A 109 ---KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185 (814)
T ss_dssp ---SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTT
T ss_pred ---CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCC
Confidence 678999999999999999988544455568999999999999 88899999999999999999988888877665 7
Q ss_pred CeEEEEEcc--CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 161 GISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 161 ~v~~l~~~p--~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
.+.+++|+| ++.++++++ |.|++||+.+++.+..+.+|...|++++|+|+++++++++ .||.|++||+.+++..
T Consensus 186 ~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~~- 263 (814)
T 3mkq_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKVE- 263 (814)
T ss_dssp CCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSEE-
T ss_pred CEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcEE-
Confidence 899999999 999999998 8999999999999999999999999999999999999988 6999999999887633
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCE-EEEEecCCcEEEEEcCCcccccccCceeEEe------------------
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISETGVCYIWYGQNIEELRNTKATKILS------------------ 297 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------------------ 297 (630)
..+..+...+..+.++ |++.. +++++.++.+.+|++..........+....+
T Consensus 264 ----~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 264 ----KTLNVGLERSWCIATH-----PTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp ----EEECCSSSSEEEEEEC-----TTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECC
T ss_pred ----EEeecCCCcEEEEEEc-----cCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecc
Confidence 3333344455566665 78763 3455556778888876543222111110000
Q ss_pred ------------------------eccCCCcccccchhhhhhhccccccccCCc--------------------eeEEEE
Q 006808 298 ------------------------SSEDVNSKSQKSATAAIFAAKLQDIVKPAS--------------------VHTFVA 333 (630)
Q Consensus 298 ------------------------~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--------------------~~~~~~ 333 (630)
.....++|+++ .+++++ ++.+.+++ +..+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR----FVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS----EEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEE
T ss_pred cccccccCccceeeeecCCCCccCCceeEECCCCC----EEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEE
Confidence 01122455555 555555 55444322 111111
Q ss_pred E-cCccCceeeEEeccCCCcEEEeecCCc---ceeeccccceeccccceeccc
Q 006808 334 Y-GLLLKPSFQKILVNSGEDINLNCSQDG---VLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 334 ~-g~~~~~~~~~~~~h~~~v~~~~~s~dg---~~l~~s~s~d~~~~~w~~~~~ 382 (630)
. .......+..+.+|...+.++.|+||| .+| ++++.|+.+++|++.++
T Consensus 410 ~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l-~~~~~d~~v~~~d~~~~ 461 (814)
T 3mkq_A 410 IDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGAL-LGVKSDGFVYFFDWDNG 461 (814)
T ss_dssp ECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSS-EEEEETTEEEEECTTTC
T ss_pred EeCCCcEEEEECCCCccceEEcCCcCccceecceE-EEEecCCEEEEEECCcC
Confidence 1 111122334556788888889999998 466 77788899999987643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=267.49 Aligned_cols=245 Identities=16% Similarity=0.177 Sum_probs=191.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.. .+.+++|.++..
T Consensus 13 ~~~V--~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~------------------~V~~v~~~~~~~-- 70 (316)
T 3bg1_A 13 EDMI--HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG------------------PVWQVAWAHPMY-- 70 (316)
T ss_dssp -CCE--EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS------------------CEEEEEECCGGG--
T ss_pred cCeE--EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc------------------cEEEEEeCCCCC--
Confidence 4678 555999999999999999999999998775 3556665544 355666654311
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCce---eE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL---LG 153 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~~---~~ 153 (630)
+.+|++|+.|++|++||+.++. .... ..+|...|.+++|+|+ |.+|++|+.|++|++||+..+.. ..
T Consensus 71 -----~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~ 144 (316)
T 3bg1_A 71 -----GNILASCSYDRKVIIWREENGTWEKSHE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144 (316)
T ss_dssp -----SSCEEEEETTSCEEEECCSSSCCCEEEE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred -----CCEEEEEECCCEEEEEECCCCcceEEEE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee
Confidence 6789999999999999999874 3333 3579999999999997 78999999999999999987632 34
Q ss_pred EeecCCCCeEEEEEccC-----------------CCEEEEeC--CeEEEEECCCC---ceeeEeecCCCCeEEEEEeeCC
Q 006808 154 KFRASTKGISCMAVSSD-----------------GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~-----------------~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~v~~l~~sp~~ 211 (630)
.+.+|...|.+++|+|+ +.+|++++ +.|++||+..+ +.+..+.+|..+|.+++|+|++
T Consensus 145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence 56678889999999997 46888887 89999999755 4667788999999999999986
Q ss_pred ----cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 212 ----KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 212 ----~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.+|++++ .|++|++|++...............|. ..+..+.|+ |++.+|++++.||.|+||+..
T Consensus 225 ~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~~~~~-~~v~~v~~s-----p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 GLPTSTIASCS-QDGRVFIWTCDDASSNTWSPKLLHKFN-DVVWHVSWS-----ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SCSCCEEEEEE-TTCEEEEEECSSTTCCCCBCCEEEECS-SCEEEEEEC-----TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCceEEEEc-CCCeEEEEEccCccccchhhhhhhcCC-CcEEEEEEc-----CCCCEEEEEcCCCeEEEEEEC
Confidence 7788877 799999999876321100011112233 345566676 999999999999999999974
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=275.51 Aligned_cols=246 Identities=13% Similarity=0.156 Sum_probs=201.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCC----CcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|+|++||+|+.||.|++|++.+ ......+.+|.. .+.++.|.+.+
T Consensus 67 ~~~v--~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~- 125 (416)
T 2pm9_A 67 DSKF--NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS------------------SVKTVKFNAKQ- 125 (416)
T ss_dssp SSCE--EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS------------------CCCEEEECSSS-
T ss_pred CCce--EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc------------------ceEEEEEcCCC-
Confidence 3567 5669999999999999999999999987 346666665544 45566666543
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCe------eeEEc--cCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCC
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRL--SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~------~~~~~--~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~ 149 (630)
+.+|++++.+|.|++||+.++. ....+ ..+|...|.+++|+|+ +.+|++++.||.|++||+.++
T Consensus 126 -------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 198 (416)
T 2pm9_A 126 -------DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK 198 (416)
T ss_dssp -------TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred -------CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence 5689999999999999999886 32222 3478899999999998 789999999999999999999
Q ss_pred ceeEEeecC------CCCeEEEEEccCC-CEEEEeC--C---eEEEEECCCC-ceeeEee-cCCCCeEEEEEee-CCcEE
Q 006808 150 SLLGKFRAS------TKGISCMAVSSDG-KMLATAA--G---QLKTFNCSDH-KKMQKFS-GHPGAVRFMTFSD-NGKYV 214 (630)
Q Consensus 150 ~~~~~~~~~------~~~v~~l~~~p~~-~~l~~~~--g---~i~lwd~~~~-~~~~~~~-~h~~~v~~l~~sp-~~~~l 214 (630)
+.+..+..+ ...|.+++|+|++ .++++++ + .|++||++++ ..+..+. +|...|++++|+| ++.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l 278 (416)
T 2pm9_A 199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278 (416)
T ss_dssp EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence 999988876 6799999999997 5777777 5 9999999986 5677787 8999999999999 89999
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEEEcCCcccc
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
++++ .|+.|++||+.+++.. ..+..+...+..+.|+ |++ .+|++++.||.|++|++.++...
T Consensus 279 ~s~~-~dg~v~~wd~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 279 LSSG-RDNTVLLWNPESAEQL-----SQFPARGNWCFKTKFA-----PEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEE-SSSEEEEECSSSCCEE-----EEEECSSSCCCCEEEC-----TTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEEe-CCCCEEEeeCCCCccc-----eeecCCCCceEEEEEC-----CCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 9888 6999999999887633 3333344455566676 888 89999999999999999877643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-31 Score=273.00 Aligned_cols=236 Identities=14% Similarity=0.175 Sum_probs=194.9
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
..|+|+|++||+|+.||.|+|||+.++.....+.+|... +++++|.+. +.+|+
T Consensus 103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~------------------v~~~~~~~~---------~~~l~ 155 (420)
T 3vl1_A 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE------------------ITKLKFFPS---------GEALI 155 (420)
T ss_dssp EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSC------------------EEEEEECTT---------SSEEE
T ss_pred EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCc------------------cEEEEECCC---------CCEEE
Confidence 378999999999999999999999999888777655544 445555553 77899
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC---CCCeEE---
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGISC--- 164 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~~--- 164 (630)
+|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++++..+..+ ...+.+
T Consensus 156 s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp EEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred EEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 9999999999999999887666 479999999999999999999999999999999999999888753 334444
Q ss_pred ------------------EEEccCCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCc-EEEEEeeCCC
Q 006808 165 ------------------MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGK-YVLSSAVGER 222 (630)
Q Consensus 165 ------------------l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~-~l~~~~~~d~ 222 (630)
++|+|++++|++++ |.|++||+++++.+..+. +|...|++++|+|++. +|++++ .|+
T Consensus 235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg 313 (420)
T 3vl1_A 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENG 313 (420)
T ss_dssp EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTS
T ss_pred ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCC
Confidence 45578999999988 899999999998777664 5788999999999999 888877 699
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.|++||+.+++.. ...+ ..++...+.++++ +++.+|++++.||.|++|++...
T Consensus 314 ~i~vwd~~~~~~~--~~~~-~~~~~~~v~~~~~------~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 314 MLAQWDLRSPECP--VGEF-LINEGTPINNVYF------AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEEEETTCTTSC--SEEE-EESTTSCEEEEEE------ETTEEEEEETTTEEEEEEEECCT
T ss_pred eEEEEEcCCCcCc--hhhh-hccCCCCceEEEe------CCCCEEEEecCCccEEEEeccCC
Confidence 9999999987542 1122 2334555666666 56789999999999999998764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.3e-30 Score=267.66 Aligned_cols=272 Identities=16% Similarity=0.251 Sum_probs=219.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+++++|++|++|+.||.|++||+.+++....+.+|.. .+.++.| + +.+|++
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~---~--------~~~l~s 188 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG------------------SVLCLQY---D--------ERVIIT 188 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSS------------------CEEEEEC---C--------SSEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC------------------cEEEEEE---C--------CCEEEE
Confidence 4455899999999999999999999999988876544 3456666 1 678999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee---EEeecCCCCeEEEEEc
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---GKFRASTKGISCMAVS 168 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~l~~~ 168 (630)
|+.||.|++||+.+++.+..+. +|...|.+++|+ +..+++|+.||.|++||+.+++.. ..+.+|...|.+++|
T Consensus 189 g~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 189 GSSDSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EETTSCEEEEESSSCCEEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EcCCCeEEEEECCCCcEEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999999999999999886664 799999999996 459999999999999999988765 667889999999999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
++.++++++ |.|++||+.+++.+..+.+|...|.++.|+ +.++++++ .|+.|++||+.+++. ...+..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~~~~-----~~~~~~h 335 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC-----LRVLEGH 335 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCE-----EEEECCC
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCCCCE-----EEEEeCC
Confidence 677888887 899999999999999999999999999985 67888887 699999999998763 3334434
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCC
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 326 (630)
...+.++.+ ++.+|++|+.||.|++||+.++...... ..
T Consensus 336 ~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------------~~------------------- 374 (435)
T 1p22_A 336 EELVRCIRF-------DNKRIVSGAYDGKIKVWDLVAALDPRAP---------------AG------------------- 374 (435)
T ss_dssp SSCEEEEEC-------CSSEEEEEETTSCEEEEEHHHHTSTTSC---------------TT-------------------
T ss_pred cCcEEEEEe-------cCCEEEEEeCCCcEEEEECCCCCCcccc---------------cc-------------------
Confidence 444444544 5789999999999999998655421100 00
Q ss_pred ceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
...+..+.+|.+.|.+++| ++.+| ++++.|+++++|++.+
T Consensus 375 ------------~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 375 ------------TLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWDFLN 414 (435)
T ss_dssp ------------TTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC---
T ss_pred ------------chheeeccCCCCCeEEEEe--CCCEE-EEEeCCCEEEEEECCC
Confidence 0123345588899999999 78888 9999999999999864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=253.24 Aligned_cols=239 Identities=21% Similarity=0.339 Sum_probs=196.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|+|++|++|+.||.|++||+.+++++..+.+|...+ .++.|.+.
T Consensus 65 ~~~v--~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~------ 118 (312)
T 4ery_A 65 KLGI--SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV------------------FCCNFNPQ------ 118 (312)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE------------------EEEEECSS------
T ss_pred CCce--EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCE------------------EEEEEcCC------
Confidence 3567 556999999999999999999999999999998887665444 45555443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-cCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~ 161 (630)
+.+|++|+.+|.|++||+.+++.+..+ ..|..+|.+++|+|++++|++++.||.|++||+.+++.+..+. .+...
T Consensus 119 ---~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 194 (312)
T 4ery_A 119 ---SNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194 (312)
T ss_dssp ---SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred ---CCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence 778999999999999999999887666 4799999999999999999999999999999999999887764 34568
Q ss_pred eEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEE--EEEe-eCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF--MTFS-DNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~--l~~s-p~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
+.+++|+|++++|++++ +.|++||+.+++.+..+.+|...+.. ..|+ +++.+|++++ .|+.|++||+.+++.
T Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~-- 271 (312)
T 4ery_A 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEI-- 271 (312)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCE--
T ss_pred eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchh--
Confidence 99999999999999988 89999999999999999888765332 3444 5677888777 799999999988763
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe--cCCcEEEEEcC
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ 282 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~ 282 (630)
...+..+...+..+.++ |++.++++++ .||.|++|+..
T Consensus 272 ---~~~~~~h~~~v~~~~~~-----p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 ---VQKLQGHTDVVISTACH-----PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ---EEEECCCSSCEEEEEEC-----SSSSEEEEEECTTTCCEEEEECC
T ss_pred ---hhhhhccCCcEEEEeec-----CcCCceEEEEccCCccEEEecCC
Confidence 33344344445556666 8999999987 59999999864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=264.43 Aligned_cols=247 Identities=13% Similarity=0.206 Sum_probs=201.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|++||+.+++.+..+.+|.. .+.++.|.
T Consensus 134 ~~~v--~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~-------- 185 (401)
T 4aez_A 134 STYV--ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA------------------RVGCLSWN-------- 185 (401)
T ss_dssp TCCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS------------------CEEEEEEE--------
T ss_pred CCCE--EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC------------------ceEEEEEC--------
Confidence 4577 5669999999999999999999999999999888875443 45567772
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++|+.+|.|++||+...........+|...|.+++|+|++++|++++.|+.|++||+.+++++..+..|...|
T Consensus 186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v 262 (401)
T 4aez_A 186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262 (401)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence 56899999999999999995444334445799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCC-EEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe-eCCCeEEEEEcCCCcccc
Q 006808 163 SCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVKKQS 236 (630)
Q Consensus 163 ~~l~~~p~~~-~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~-~~d~~i~vwd~~~~~~~~ 236 (630)
.+++|+|++. ++++++ +.|++||+.+++.+..+. +...|.+++|+|+++++++++ ..|+.|++|++.++...
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~- 340 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT- 340 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-
Confidence 9999999764 555542 799999999999888886 667899999999999998853 35999999999886543
Q ss_pred ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
....+..+...+..+.|+ |++.+|++++.||.|++|++.+++.+..
T Consensus 341 --~~~~~~~h~~~v~~~~~s-----~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 341 --KQVDIPAHDTRVLYSALS-----PDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp --EEEEEECCSSCCCEEEEC-----TTSSEEEEECTTSEEEEEECCC------
T ss_pred --eEEEecCCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 233333344455566676 9999999999999999999998877654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=269.89 Aligned_cols=295 Identities=11% Similarity=0.008 Sum_probs=221.4
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccc-------c--------c-cccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-------E--------R-EHLSVD 67 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~-------~--------~-~~~~~~ 67 (630)
..| .+++|||||+++|+++.|++|+ |...++ .+.+|...+..+.|+|+- . . +| ...
T Consensus 16 ~~v--~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~ 87 (588)
T 2j04_A 16 DWK--NNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCY 87 (588)
T ss_dssp SSS--CCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCC
T ss_pred ccE--EEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCc
Confidence 456 4559999999999999999999 755554 447888888888777641 0 0 22 456
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCC-----CEEEEEEecCCCEEEEEeCCCcEE
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGADGMVC 142 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~-----~v~~~~~s~~g~~l~s~~~dg~v~ 142 (630)
+.+++|.|. +..|++++.+|.|++||..+ ++..+ . |.. .|.+++|||+|++|++|+.||+|+
T Consensus 88 V~~vawSPd---------G~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 88 PRVCKPSPI---------DDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp EEEEEECSS---------SSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred EEEEEECCC---------CCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 889999986 78899999999999999544 44343 3 554 599999999999999999999999
Q ss_pred EEeCCCCce-------eEEe----ecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCce---eeEe-ecCCCCeEEEE
Q 006808 143 EIDPLTGSL-------LGKF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF-SGHPGAVRFMT 206 (630)
Q Consensus 143 iwd~~~~~~-------~~~~----~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~---~~~~-~~h~~~v~~l~ 206 (630)
+||+.++.. +.++ .+|...|.+++|+|+| ++++++ ++|++||+.++.. ..++ .+|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 999998853 5676 5667899999999999 555554 8999999988773 3466 47889999999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEe--cCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI--DNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
|+ |+++++++ ++.|++||+.+++.. ....+|...+.. +.+ + |++..|++++.||. ++|....
T Consensus 234 Fs--g~~LASa~--~~tIkLWd~~~~~~~----~~~~gh~~~V~~-va~~~s-----~d~~~La~a~edG~-klw~~d~- 297 (588)
T 2j04_A 234 IV--DYKVVLTC--PGYVHKIDLKNYSIS----SLKTGSLENFHI-IPLNHE-----KESTILLMSNKTSY-KVLLEDE- 297 (588)
T ss_dssp EE--TTEEEEEC--SSEEEEEETTTTEEE----EEECSCCSCCCE-EEETTC-----SSCEEEEECSSCEE-EEEESSS-
T ss_pred EE--CCEEEEEe--CCeEEEEECCCCeEE----EEEcCCCceEEE-EEeeeC-----CCCCEEEEEcCCCC-EEEeecc-
Confidence 99 68888875 689999999987642 444455555444 556 5 89999999999999 9999861
Q ss_pred ccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCccee
Q 006808 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (630)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (630)
+. ++|++. .+++ .++.++.|+. .|.. +..+ .+...|.+++|||||..+
T Consensus 298 ------------~~----~spd~~----l~a~--~d~~v~lW~~-----~g~~----l~~~-~~~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 298 ------------LH----VTADNI----IAPY--LEKKFKKWST-----IWNE----FNNY-ETTLVIHGISLSPDGYSI 345 (588)
T ss_dssp ------------EE----EECCCS----SHHH--HHHHHHHTTT-----TTTS----SSSS-CCEEEEEEEEECTTSSEE
T ss_pred ------------EE----ECCCce----EEEE--cCCEEEEEEC-----CCCc----eeee-ccceEEEEEEECCCCCEE
Confidence 11 455544 3333 3777777552 1111 1122 225568999999999998
Q ss_pred ecccc
Q 006808 365 PMSQS 369 (630)
Q Consensus 365 ~~s~s 369 (630)
++++
T Consensus 346 -A~~~ 349 (588)
T 2j04_A 346 -AIVY 349 (588)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 6665
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=262.65 Aligned_cols=274 Identities=14% Similarity=0.135 Sum_probs=215.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| .+++|+|+|++|++|+.||.|+||++.++. ....+..|. ..+++++|.+.
T Consensus 11 ~~~v--~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~--- 67 (342)
T 1yfq_A 11 KDYI--SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK------------------HPLLCCNFIDN--- 67 (342)
T ss_dssp SSCE--EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS------------------SCEEEEEEEES---
T ss_pred CCcE--EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC------------------CceEEEEECCC---
Confidence 4578 566999999999999999999999998877 223333332 34667777664
Q ss_pred cccccCCc-EEEEEeCCCeEEEEEc-cCCeeeEEccCC--CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-------
Q 006808 80 KKRKLGSS-LLVLGTGGGDVLALAV-SAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------- 148 (630)
Q Consensus 80 ~~~~~~~~-~l~~~~~~g~v~iwd~-~~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~------- 148 (630)
+. +|++|+.+|.|++||+ .++.. ....+ |...|.+++|+| ++.|++++.|+.|++||+.+
T Consensus 68 ------~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 68 ------TDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp ------SSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred ------CCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence 67 8999999999999999 88766 33357 999999999999 99999999999999999988
Q ss_pred --CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC-Cce--eeEeecCCCCeEEEEEee-CCcEEEEEeeC
Q 006808 149 --GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLSSAVG 220 (630)
Q Consensus 149 --~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~ 220 (630)
++++..+. |...|.+++|+|++ +++++ +.|++||+++ +.. ......|...+.+++|+| +++++++++ .
T Consensus 139 ~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~ 214 (342)
T 1yfq_A 139 VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-I 214 (342)
T ss_dssp EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-T
T ss_pred ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-c
Confidence 77777777 78899999999987 55555 8999999988 543 334456888999999999 999999988 6
Q ss_pred CCeEEEEEcCCC------ccccceeeeeecCC--------ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 221 ERYIALWRTDGV------KKQSASCVLAMEHP--------AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 221 d~~i~vwd~~~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
|+.|++|++... +.. ..+. .|. ...+..+.|+ |++.+|++++.||.|++||+.+++.
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKR---FAFR-CHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTC---EEEE-CCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEE
T ss_pred CCcEEEEEEcCCCcccccccc---eeee-cccccccccccceeEEEEEEc-----CCCCEEEEecCCceEEEEcCccHhH
Confidence 999999999876 221 2222 121 2256667776 9999999999999999999876644
Q ss_pred ccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEecc-CCCcEEEeecCCcceee
Q 006808 287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLP 365 (630)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~ 365 (630)
+.. +..| ...|.+++ |+|.+|
T Consensus 286 ~~~-------------------------------------------------------~~~~h~~~v~~~~--~~~~~l- 307 (342)
T 1yfq_A 286 IKN-------------------------------------------------------FAKFNEDSVVKIA--CSDNIL- 307 (342)
T ss_dssp EEE-------------------------------------------------------CCCCSSSEEEEEE--ECSSEE-
T ss_pred hhh-------------------------------------------------------hhcccCCCceEec--CCCCeE-
Confidence 221 1144 66788888 999999
Q ss_pred ccccceec-ccccee
Q 006808 366 MSQSLLKS-KRGRYV 379 (630)
Q Consensus 366 ~s~s~d~~-~~~w~~ 379 (630)
++++.|+. .+.+..
T Consensus 308 ~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 308 CLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEECTHHHHCSSS
T ss_pred EEEecCCcccccccc
Confidence 99999998 666653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=269.21 Aligned_cols=276 Identities=12% Similarity=0.135 Sum_probs=220.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||.|++|| .++..+..+..|... +.++.|.+.
T Consensus 108 ~~~v--~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~------------------v~~~~~~~~------ 160 (425)
T 1r5m_A 108 TNQV--TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAP------------------IVSVKWNKD------ 160 (425)
T ss_dssp CBCE--EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSC------------------EEEEEECTT------
T ss_pred CCce--EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCcc------------------EEEEEECCC------
Confidence 3478 5669999999999999999999999 678888877755544 445555543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC---------------EEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---------------VSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~---------------v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+.+|++++.+|.|++||+.+++.+..+. .|... +.+++|+|++ .+++++.+|.|++||+.
T Consensus 161 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 161 ---GTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp ---SSEEEEEETTCCEEEEETTTTEEEEEEC-CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred ---CCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence 7789999999999999999998876664 45555 9999999975 68899999999999999
Q ss_pred CCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
+++.+..+..|...|.+++|+|++++|++++ +.|++||+.+++.+..+.+|...|.+++|+|++ ++++++ .|+.|+
T Consensus 236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~ 313 (425)
T 1r5m_A 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVR 313 (425)
T ss_dssp CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEE
T ss_pred CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEE
Confidence 9999999999999999999999999999988 899999999999999999999999999999999 778777 699999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc--------------------
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-------------------- 285 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------------------- 285 (630)
+||+.+++.. ..+..+...+..+.|+ |++.+|++++.||.|++||+.++.
T Consensus 314 i~d~~~~~~~-----~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (425)
T 1r5m_A 314 LWSLKQNTLL-----ALSIVDGVPIFAGRIS-----QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP 383 (425)
T ss_dssp EEETTTTEEE-----EEEECTTCCEEEEEEC-----TTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred EEECCCCcEe-----EecccCCccEEEEEEc-----CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence 9999887633 2333334455666776 999999999999999999998877
Q ss_pred cccccCceeE--EeeccCCCcccccchhhhhhhccccccccCCc
Q 006808 286 ELRNTKATKI--LSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS 327 (630)
Q Consensus 286 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 327 (630)
.+........ .+.+ ..++++++ .+++++.++.+++|+
T Consensus 384 ~~~~~~~~~~~~~v~~-~~~s~~~~----~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 384 LYASYQSSQDNDYIFD-LSWNCAGN----KISVAYSLQEGSVVA 422 (425)
T ss_dssp EEEEECCTTCCCCEEE-EEECTTSS----EEEEEESSSCCEEEE
T ss_pred hhhhhcCcccCCceEE-EEccCCCc----eEEEEecCceEEEEe
Confidence 4443332211 1111 12677776 788888887666543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=258.30 Aligned_cols=252 Identities=15% Similarity=0.199 Sum_probs=200.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc----EEEEecccccccccccccccccccccccceeeEEeccc-c
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-D 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~-~ 77 (630)
.++| .+++|+|+|++||+|+.||.|+|||+.++. ....+.+|.. .+++++|.+. +
T Consensus 11 ~~~v--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~d 70 (351)
T 3f3f_A 11 DDLV--HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS------------------SIVAIDWASPEY 70 (351)
T ss_dssp SSCE--EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS------------------CEEEEEECCGGG
T ss_pred ccce--eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC------------------cEEEEEEcCCCC
Confidence 4678 566999999999999999999999998763 4555554433 4667777664 2
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCC---------eeeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeC
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~---------~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~ 146 (630)
+.+|++|+.||.|++||+.++ +.+..+ .+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 71 --------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 71 --------GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp --------CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred --------CCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 678999999999999999887 334343 579999999999999 999999999999999999
Q ss_pred CCCceeEEee-------------cCCCCeEEEEEccC---CCEEEEeC--CeEEEEECCCCce--eeEeecCCCCeEEEE
Q 006808 147 LTGSLLGKFR-------------ASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMT 206 (630)
Q Consensus 147 ~~~~~~~~~~-------------~~~~~v~~l~~~p~---~~~l~~~~--g~i~lwd~~~~~~--~~~~~~h~~~v~~l~ 206 (630)
.+++.+..+. .+...+.+++|+|+ +.++++++ +.+.+|+...++. +..+.+|...|++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 221 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS 221 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence 9887655443 46778999999997 88888887 7887788777764 677789999999999
Q ss_pred EeeCC----cEEEEEeeCCCeEEEEEcCCCccc-----------------------------------------cceeee
Q 006808 207 FSDNG----KYVLSSAVGERYIALWRTDGVKKQ-----------------------------------------SASCVL 241 (630)
Q Consensus 207 ~sp~~----~~l~~~~~~d~~i~vwd~~~~~~~-----------------------------------------~~~~~~ 241 (630)
|+|++ .+|++++ .|+.|++||+..+... ......
T Consensus 222 ~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp ECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred ECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 99998 7888877 6999999999864210 012333
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
.+..+...+..+.|+ |++.+|++++.||.|+||++.+++.+..
T Consensus 301 ~~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWN-----LTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp EECTTSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEecccccEEEEEEc-----CCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 344444556667776 9999999999999999999988766543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=261.21 Aligned_cols=249 Identities=16% Similarity=0.208 Sum_probs=200.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECC--CCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++||+|+.||.|+|||+. ++.....+.+|.. .++++.|.+...
T Consensus 11 ~~~v--~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~-- 68 (379)
T 3jrp_A 11 NELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG------------------PVWRVDWAHPKF-- 68 (379)
T ss_dssp CCCE--EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS------------------CEEEEEECCGGG--
T ss_pred cccE--EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC------------------cEEEEEeCCCCC--
Confidence 4678 556999999999999999999999997 5556666665443 455667754421
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCc--eeEE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGK 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~--~~~~ 154 (630)
+.+|++|+.||.|++||+.+++ .... ..+|...|.+++|+|+ +.+|++++.|+.|++||+.++. ....
T Consensus 69 -----~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 69 -----GTILASCSYDGKVLIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp -----CSEEEEEETTSCEEEEEEETTEEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred -----CCEEEEeccCCEEEEEEcCCCceeEeee-ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence 6789999999999999999987 4433 3579999999999999 9999999999999999998873 3445
Q ss_pred eecCCCCeEEEEEcc-------------CCCEEEEeC--CeEEEEECCCCc----eeeEeecCCCCeEEEEEeeC---Cc
Q 006808 155 FRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDN---GK 212 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p-------------~~~~l~~~~--g~i~lwd~~~~~----~~~~~~~h~~~v~~l~~sp~---~~ 212 (630)
+..|...|.+++|+| ++.++++++ |.|++||++++. ....+.+|...|.+++|+|+ +.
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 778899999999999 689999987 899999998764 44667889999999999999 88
Q ss_pred EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
+|++++ .|+.|++||+..+.................+..+.|+ |++.+|++++.||.|++|++....
T Consensus 223 ~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 223 YLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEETT
T ss_pred eEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCCC
Confidence 888887 6999999999987532111222222244456667776 999999999999999999987543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=264.85 Aligned_cols=280 Identities=14% Similarity=0.189 Sum_probs=217.5
Q ss_pred eEECCCCCEE-EEeeCCCcEEEEECCCCcEE----EEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 11 ~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
++++|+...+ ++|+.||.|+||++...... ..+. +| ...+++++|.+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-----------------~h-~~~V~~~~~~p~~-------- 93 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-----------------GH-TAPVLDIAWCPHN-------- 93 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-----------------CC-SSCEEEEEECTTC--------
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-----------------cC-CCCEEEEEeCCCC--------
Confidence 5788877544 45788999999998654321 1222 33 2357788887743
Q ss_pred CcEEEEEeCCCeEEEEEccCC-------eeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceeEEe--
Q 006808 86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF-- 155 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~-------~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~~~~-- 155 (630)
+.+|++|+.||.|++||+.++ ..+..+ .+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+
T Consensus 94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP 172 (402)
T ss_dssp TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence 778999999999999999987 334343 4799999999999998 69999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ecCCCC-eEEEEEeeCCcEEEEEe--eCCCeEEEEEc
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGA-VRFMTFSDNGKYVLSSA--VGERYIALWRT 229 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~-v~~l~~sp~~~~l~~~~--~~d~~i~vwd~ 229 (630)
..|...|.+++|+|++.+|++++ |.|++||+++++.+..+ .+|.+. +.++.|+|++.+|+++. +.|+.|++||+
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 78999999999999999999988 89999999999999888 788776 89999999999888872 26999999999
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEE-EecCCcEEEEEcCCccc-ccccCceeEEeeccCCCcccc
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNIEE-LRNTKATKILSSSEDVNSKSQ 307 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 307 (630)
.+.... .......+... +..+.|+ |++.+|++ |+.||.|++|++.+++. +..
T Consensus 253 ~~~~~~--~~~~~~~~~~~-v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~------------------ 306 (402)
T 2aq5_A 253 KHLEEP--LSLQELDTSSG-VLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPFLHY------------------ 306 (402)
T ss_dssp TBCSSC--SEEEECCCCSS-CEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTCEEE------------------
T ss_pred ccccCC--ceEEeccCCCc-eeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcceEe------------------
Confidence 886642 12333344443 4455666 89998865 55799999999876542 100
Q ss_pred cchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 308 ~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
+... .|...|.+++|+|+|.++ +++ ++.+++|++..
T Consensus 307 ----------------------------------l~~~-~~~~~v~~~~~sp~~~~~-~s~--~~~~~~~~l~~ 342 (402)
T 2aq5_A 307 ----------------------------------LSMF-SSKESQRGMGYMPKRGLE-VNK--CEIARFYKLHE 342 (402)
T ss_dssp ----------------------------------EEEE-CCSSCCSEEEECCGGGSC-GGG--TEEEEEEEEET
T ss_pred ----------------------------------eccc-ccCCcccceEEecccccc-eec--ceeEEEEEcCC
Confidence 0011 245689999999999988 654 56899999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=261.76 Aligned_cols=242 Identities=12% Similarity=0.203 Sum_probs=200.0
Q ss_pred cccceeEeEECCC----CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 4 ~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.+| .+++|+|+ |++|++|+.||.|+|||+.+++.+..+.+|... +.++.|.+.+
T Consensus 70 ~~v--~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------------i~~~~~~~~~-- 127 (366)
T 3k26_A 70 ENF--YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA------------------INELKFHPRD-- 127 (366)
T ss_dssp CCE--EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSC------------------EEEEEECSSC--
T ss_pred CcE--EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCc------------------EEEEEECCCC--
Confidence 457 56699999 679999999999999999999999888765544 4556665532
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+.+|++|+.+|.|++||+.+++.+..+. .+|...|.+++|+|++++|++++.||.|++||+.+++....+..
T Consensus 128 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 128 ------PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp ------TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred ------CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence 7789999999999999999998876652 57999999999999999999999999999999998765544433
Q ss_pred ----------------------------CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce--------------ee
Q 006808 158 ----------------------------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--------------MQ 193 (630)
Q Consensus 158 ----------------------------~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~--------------~~ 193 (630)
|...|.+++|+ +.++++++ +.|++||+.++.. +.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 279 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG 279 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence 88899999999 67888887 8999999987644 77
Q ss_pred EeecCCCCeEEEEEeeC--CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC--ceeeeeEEecCCccCCCCCEEEE
Q 006808 194 KFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLA 269 (630)
Q Consensus 194 ~~~~h~~~v~~l~~sp~--~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s 269 (630)
.+.+|...|++++|+|+ +++|++++ .|+.|++||+.+++.... ....+..+ ...+..+.|+ |++.+|++
T Consensus 280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s 352 (366)
T 3k26_A 280 RFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHKA-KCTTLTHHKCGAAIRQTSFS-----RDSSILIA 352 (366)
T ss_dssp EEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGGC-EEEEECCTTCCSCEEEEEEC-----TTSSEEEE
T ss_pred cccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCccc-cceEEcccccCCceEEEEeC-----CCCCeEEE
Confidence 78899999999999999 99999887 699999999998764421 12223332 4566677777 99999999
Q ss_pred EecCCcEEEEEcC
Q 006808 270 ISETGVCYIWYGQ 282 (630)
Q Consensus 270 ~s~dg~i~iwd~~ 282 (630)
++.||.|++||+.
T Consensus 353 ~~~dg~i~iwd~~ 365 (366)
T 3k26_A 353 VCDDASIWRWDRL 365 (366)
T ss_dssp EETTSEEEEEEC-
T ss_pred EeCCCEEEEEEec
Confidence 9999999999985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=251.05 Aligned_cols=246 Identities=13% Similarity=0.124 Sum_probs=190.7
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC--eeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVC 142 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~ 142 (630)
.+.+++|.+. +.+|++|+.||.|+|||+..+ +.+.. +.+|.++|.+++|++ ++++|++|+.|++|+
T Consensus 11 ~V~~~~~s~~---------g~~las~s~D~~v~iw~~~~~~~~~~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 11 MIHDAVMDYY---------GKRMATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEEEEEECTT---------SSEEEEEETTSCEEEEEBCSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceEEEEECCC---------CCEEEEEeCCCEEEEEecCCCCcEEEEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4556666544 788999999999999999754 34434 458999999999986 488999999999999
Q ss_pred EEeCCCCc--eeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeC----
Q 006808 143 EIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDN---- 210 (630)
Q Consensus 143 iwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~---- 210 (630)
+||+.+++ .+..+..|...|.+++|+|+ +.+|++++ +.|++||++++. ....+.+|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99998874 56678889999999999997 88999988 899999998763 24567899999999999997
Q ss_pred ---------CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC---CCEEEEEecCCcEEE
Q 006808 211 ---------GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYI 278 (630)
Q Consensus 211 ---------~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~dg~i~i 278 (630)
+++|++++ .|+.|++||+.++... ......+..+...+..+.|+ |+ +.+|++++.||.|+|
T Consensus 161 ~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~i 233 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCII 233 (297)
T ss_dssp ---------CCEEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEE
T ss_pred cccCCCCCCcceEEEEc-CCCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEE
Confidence 46888887 6999999999876422 11233344444556667776 77 489999999999999
Q ss_pred EEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
||+.+..... ..... ....|...|.+++|+
T Consensus 234 Wd~~~~~~~~-----~~~~~---------------------------------------------~~~~~~~~v~~~~~s 263 (297)
T 2pm7_B 234 WTQDNEQGPW-----KKTLL---------------------------------------------KEEKFPDVLWRASWS 263 (297)
T ss_dssp EEESSTTSCC-----EEEES---------------------------------------------SSSCCSSCEEEEEEC
T ss_pred EEeCCCCCcc-----ceeee---------------------------------------------ecccCCCcEEEEEEC
Confidence 9986532100 00000 001455679999999
Q ss_pred CCcceeeccccceeccccceec
Q 006808 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|+|.+| ++++.|+++++|+..
T Consensus 264 ~~g~~l-as~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 264 LSGNVL-ALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSSCCE-EEEETTSCEEEEEEC
T ss_pred CCCCEE-EEEcCCCcEEEEEEC
Confidence 999999 999999999999863
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=257.77 Aligned_cols=251 Identities=12% Similarity=0.150 Sum_probs=203.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++|++|+.||.|++||+.+++....+.. .+| ...+.++.|.+.
T Consensus 52 ~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~-~~~v~~~~~~~~------ 107 (372)
T 1k8k_C 52 NGQV--TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI---------------LRI-NRAARCVRWAPN------ 107 (372)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC---------------CCC-SSCEEEEEECTT------
T ss_pred CCcc--cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe---------------ecC-CCceeEEEECCC------
Confidence 4577 5569999999999999999999999988876544321 012 235667777664
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee---eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC-------------
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------------- 146 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~------------- 146 (630)
+.+|++++.+|.|++||+..+.. ...+..+|...|.+++|+|++++|++++.||.|++||+
T Consensus 108 ---~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 184 (372)
T 1k8k_C 108 ---EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 184 (372)
T ss_dssp ---SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBT
T ss_pred ---CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccc
Confidence 77899999999999999998762 34555679999999999999999999999999999995
Q ss_pred -----CCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 147 -----LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 147 -----~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
..++++..+..|...|.+++|+|++.+|++++ +.|++||+.+++.+..+..|..+|.+++|+|++.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-- 262 (372)
T 1k8k_C 185 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-- 262 (372)
T ss_dssp TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--
T ss_pred cccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--
Confidence 46788888989999999999999999999988 899999999999999999999999999999999877665
Q ss_pred CCCeEEEEEcCC--Cccc----------------------------cce-------eeeeecCCceeeeeEEecCCccCC
Q 006808 220 GERYIALWRTDG--VKKQ----------------------------SAS-------CVLAMEHPAVFMDCRCIDNGGVDD 262 (630)
Q Consensus 220 ~d~~i~vwd~~~--~~~~----------------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 262 (630)
.|+.|++|++.. +... ... ......|...+..+.+++ +
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~ 337 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLS-----G 337 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEE-----S
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEec-----C
Confidence 599999999987 3200 000 111124556565555676 7
Q ss_pred CC---CEEEEEecCCcEEEEEcCCcccc
Q 006808 263 AG---LYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 263 ~~---~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
+| .+|++|+.||.|++|++.+++.+
T Consensus 338 ~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 338 GKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp TTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred CCcceeeEEEecCCCceEEEEecChhHh
Confidence 77 99999999999999999887654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=252.91 Aligned_cols=279 Identities=13% Similarity=0.101 Sum_probs=212.4
Q ss_pred CcccceeEeEECCC---CCEEEEeeCCCcEEEEECCC-CcEE-EEecccccccccccccccccccccccceeeEEecccc
Q 006808 3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLK-GQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 3 s~~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
.++| .+++|+|+ |++||+|+.||.|+|||+.+ +..+ ..+.+|.. .++++.|.+.
T Consensus 39 ~~~v--~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~- 97 (368)
T 3mmy_A 39 DDSI--GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG------------------PVLDVCWSDD- 97 (368)
T ss_dssp SSCE--EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSS------------------CEEEEEECTT-
T ss_pred CCce--EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccC------------------CEEEEEECcC-
Confidence 4678 56699999 69999999999999999987 5554 55655544 3556666553
Q ss_pred cccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEE--ecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~--s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
+.+|++++.+|.|++||+.+++.... .+|...|.+++| +|++.+|++++.||.|++||+++++++..+
T Consensus 98 --------~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 98 --------GSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp --------SSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred --------CCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 77899999999999999999987753 369999999999 889999999999999999999999999998
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe--ecCCCCeEEEEEeeCCcE----EEEEeeCCCeEEEE
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKY----VLSSAVGERYIALW 227 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~----l~~~~~~d~~i~vw 227 (630)
..+. .+.++.+.++ .+++++ +.+++|++......... ..+...+.++.+.++... +++++ .|+.|++|
T Consensus 168 ~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i~ 243 (368)
T 3mmy_A 168 QLPE-RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAIH 243 (368)
T ss_dssp ECSS-CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEEE
T ss_pred ecCC-CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEEE
Confidence 8654 6677777654 444443 89999999876543322 234456677777766654 77777 69999999
Q ss_pred EcCCCccccceeeeeecCCce------------eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeE
Q 006808 228 RTDGVKKQSASCVLAMEHPAV------------FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 295 (630)
++....... ....+..+.. .+..+.|+ |++.+|++++.||.|++||+.+++.+.
T Consensus 244 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~------- 309 (368)
T 3mmy_A 244 YINPPNPAK--DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-----PVHGTLATVGSDGRFSFWDKDARTKLK------- 309 (368)
T ss_dssp ESSCSCHHH--HSEEEECSEEC----CCCEEECCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE-------
T ss_pred ecCCCCccc--cceeeeeeecccccccccccccceEEEEEe-----cCCCEEEEEccCCeEEEEECCCCcEEE-------
Confidence 998874311 1222222222 46667776 999999999999999999987654322
Q ss_pred EeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccc
Q 006808 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR 375 (630)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~ 375 (630)
.+..|...|.+++|+|||.+| ++++.|+..+
T Consensus 310 ------------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~s~d~~~~ 340 (368)
T 3mmy_A 310 ------------------------------------------------TSEQLDQPISACCFNHNGNIF-AYASSYDWSK 340 (368)
T ss_dssp ------------------------------------------------ECCCCSSCEEEEEECTTSSCE-EEEECCCSTT
T ss_pred ------------------------------------------------EecCCCCCceEEEECCCCCeE-EEEecccccc
Confidence 122566789999999999999 8888887666
Q ss_pred ccee
Q 006808 376 GRYV 379 (630)
Q Consensus 376 ~w~~ 379 (630)
.|++
T Consensus 341 ~~~~ 344 (368)
T 3mmy_A 341 GHEF 344 (368)
T ss_dssp CGGG
T ss_pred cccc
Confidence 6654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-29 Score=277.50 Aligned_cols=240 Identities=17% Similarity=0.195 Sum_probs=195.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.+| .+++|+|+|++|++|+.||+|+|||+.++.....+.+|...+.++.|+++
T Consensus 430 ~~~v--~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~------------------------ 483 (694)
T 3dm0_A 430 SHFV--EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD------------------------ 483 (694)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCC------------------------
Confidence 3567 55699999999999999999999999999999888877655554444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEE--ccCCCCCCEEEEEEecCC--CEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWR--LSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~--~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
+..|++|+.|+.|++||......... ...+|...|.+++|+|++ ..+++++.|++|++||+.++++...+.+|
T Consensus 484 ---~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h 560 (694)
T 3dm0_A 484 ---NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGH 560 (694)
T ss_dssp ---SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred ---CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 77899999999999999876544322 124688999999999986 57999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
...|++++|+|++++|++++ |.|++||+.+++.+..+. +...|.+++|+|++.++++++ ++.|++||+.++...
T Consensus 561 ~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~- 636 (694)
T 3dm0_A 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV- 636 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE-
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh-
Confidence 99999999999999999998 899999999999887776 456899999999998877654 777999999987643
Q ss_pred ceeeeeecC-----------------CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 237 ASCVLAMEH-----------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 237 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..+.... ....+..+.|+ |+|.+|++|+.||.|+||++.
T Consensus 637 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-----pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 637 --EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS-----ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --EEECCCCC----------------CCCCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-
T ss_pred --hhhccccccccccccccccccCCceeEEeeeEEEc-----CCCCEEEEEcCCCeEEEEecc
Confidence 1111000 01123456666 999999999999999999974
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=271.29 Aligned_cols=299 Identities=12% Similarity=0.093 Sum_probs=219.5
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEe-cccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
.|+|+++.+++++ .|+ .+++.+..+ .+|.. .+++++|.+.+ +.+|+
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~------------------~V~~~~~s~~~--------~~~l~ 80 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPN------------------SITSSAVSPGE--------TPYLI 80 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTS------------------CEEEEEEECSS--------SCEEE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCC------------------ceEEEEECCCC--------CCEEE
Confidence 6889998888775 388 467888877 55444 45566665522 77899
Q ss_pred EEeCCCeEEEEEccC---CeeeE-EccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC---CCceeEEeec------
Q 006808 91 LGTGGGDVLALAVSA---GQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFRA------ 157 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~---~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~---~~~~~~~~~~------ 157 (630)
+|+.||.|++||+.+ +.... ....+|...|.+++|+|++++|++++.||.|++||+. +++....+..
T Consensus 81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~ 160 (437)
T 3gre_A 81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI 160 (437)
T ss_dssp EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence 999999999999977 43211 1112589999999999999999999999999999994 5555444332
Q ss_pred ------CCCCeEEEE--EccCCCEEEEeC--CeEEEEECCCCceeeEeec--CCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 158 ------STKGISCMA--VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 158 ------~~~~v~~l~--~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
+...+.++. ++|++.++++++ +.|++||+++++.+..+.+ |...|++++|+|++++|++++ .|+.|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~ 239 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIID 239 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEE
T ss_pred EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEE
Confidence 344666666 567899999988 8999999999999999988 889999999999999999988 699999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
+||+++++.. ..+...+.. .+..+++.+ .++|++.+|++|+.||.|++||+.+++.+.........+.. ..+++
T Consensus 240 iwd~~~~~~~---~~~~~~~~~-~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~ 313 (437)
T 3gre_A 240 IWDIRFNVLI---RSWSFGDHA-PITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM-EHFLP 313 (437)
T ss_dssp EEETTTTEEE---EEEBCTTCE-EEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG-GGGSC
T ss_pred EEEcCCccEE---EEEecCCCC-ceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc-ceecc
Confidence 9999986633 222334444 444443331 23478889999999999999999988765544322211111 11333
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEec--cCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.++ .+... .+.+ |...|.+++|+ ++.+| ++|+.|+.+++|++.+.
T Consensus 314 ~~~----~l~~~--------------------------~~~~~~~~~~v~~l~~~-~~~~l-~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 314 IEK----GLEEL--------------------------NFCGIRSLNALSTISVS-NDKIL-LTDEATSSIVMFSLNEL 360 (437)
T ss_dssp BCS----SGGGC--------------------------CCCCCCSGGGGCCEEEE-TTEEE-EEEGGGTEEEEEETTCG
T ss_pred ccc----ccccc--------------------------eecccccCCceEEEEEC-CceEE-EecCCCCeEEEEECCCc
Confidence 322 11000 1223 88899999999 88888 99999999999998653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-29 Score=253.00 Aligned_cols=290 Identities=13% Similarity=0.043 Sum_probs=205.5
Q ss_pred cccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe----eeEEccCCCCCCEEEEEEec--CCCEEEEE
Q 006808 62 EHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSA 135 (630)
Q Consensus 62 ~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~----~~~~~~~~h~~~v~~~~~s~--~g~~l~s~ 135 (630)
+|. ..++++.|.+. +.+|++|+.+|.|++||+.++. .. ....+|...|++++|+| ++++|+++
T Consensus 9 gH~-~~v~~~~~~~~---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 9 GHD-DLVHDVVYDFY---------GRHVATCSSDQHIKVFKLDKDTSNWELS-DSWRAHDSSIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp CCS-SCEEEEEECSS---------SSEEEEEETTSEEEEEEECSSSCCEEEE-EEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred ccc-cceeEEEEcCC---------CCEEEEeeCCCeEEEEECCCCCCcceec-ceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence 453 35778888764 7789999999999999998763 33 33357999999999999 69999999
Q ss_pred eCCCcEEEEeCCCC---------ceeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCceeeEee------
Q 006808 136 GADGMVCEIDPLTG---------SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFS------ 196 (630)
Q Consensus 136 ~~dg~v~iwd~~~~---------~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~~~~~~~------ 196 (630)
+.||.|++||+.++ +.+..+..|...|.+++|+|+ +.++++++ |.|++||+++++.+..+.
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 99999999999887 567788889999999999999 99999987 899999999887654433
Q ss_pred -------cCCCCeEEEEEeeC---CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC--
Q 006808 197 -------GHPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-- 264 (630)
Q Consensus 197 -------~h~~~v~~l~~sp~---~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 264 (630)
+|...+.++.|+|+ +.++++++ .++.+.+|+...+... ....+..+...+..+.|+ |++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~-----p~~~~ 228 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLH---VAAKLPGHKSLIRSISWA-----PSIGR 228 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEE---EEEECCCCCSCEEEEEEC-----CCSSC
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCcee---eeeecCCCCcceeEEEEC-----CCCCC
Confidence 57789999999997 88888887 6999988887766533 344444445556677776 887
Q ss_pred --CEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCcee
Q 006808 265 --LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF 342 (630)
Q Consensus 265 --~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~ 342 (630)
.+|++++.||.|++||+.++................ ...+... .+..+..++. .......+.......+
T Consensus 229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~ 299 (351)
T 3f3f_A 229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMF-DNSADVD----MDAQGRSDSN----TEEKAELQSNLQVELL 299 (351)
T ss_dssp SSEEEEEEETTSCEEEEEEEECC------------------------------------------------CCSEEEEEE
T ss_pred cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceecc-CCCcccc----cccccccccc----cceeeeecccccccEE
Confidence 899999999999999998764433221111111100 0111111 1222221110 0111112222334556
Q ss_pred eEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 343 QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
..+.+|...|.+++|+|+|.+| ++++.|+.+++|++..
T Consensus 300 ~~~~~h~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 300 SEHDDHNGEVWSVSWNLTGTIL-SSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEECTTSSCEEEEEECSSSCCE-EEEETTSCEEEEEECT
T ss_pred EEEecccccEEEEEEcCCCCEE-EEecCCCcEEEEecCc
Confidence 6777899999999999999999 9999999999999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=284.41 Aligned_cols=250 Identities=16% Similarity=0.204 Sum_probs=201.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECC--CCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++|++|+.||+|+|||+. ++.....+.+|.. .++++.|.+...
T Consensus 9 ~~~V--~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~------------------~V~~l~~s~~~~-- 66 (753)
T 3jro_A 9 NELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG------------------PVWRVDWAHPKF-- 66 (753)
T ss_dssp CCCE--EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS------------------CEEEEEECCTTS--
T ss_pred ccee--EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcC------------------ceEEEEecCCCC--
Confidence 4688 556999999999999999999999987 4556666665544 455666655421
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCc--eeEE
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGK 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~iwd~~~~~--~~~~ 154 (630)
+.+|++|+.||.|++||+.++. ....+ .+|...|++++|+|+ ++.+++|+.||.|++||+.++. ....
T Consensus 67 -----~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 67 -----GTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp -----CSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred -----CCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE
Confidence 6789999999999999999986 44333 579999999999999 9999999999999999998873 4456
Q ss_pred eecCCCCeEEEEEcc-------------CCCEEEEeC--CeEEEEECCCC----ceeeEeecCCCCeEEEEEeeC---Cc
Q 006808 155 FRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDN---GK 212 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p-------------~~~~l~~~~--g~i~lwd~~~~----~~~~~~~~h~~~v~~l~~sp~---~~ 212 (630)
+..|...|.+++|+| ++.++++|+ |.|++||++++ .....+.+|..+|++++|+|+ +.
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 778899999999999 588888887 89999999887 456678899999999999999 88
Q ss_pred EEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 213 YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
+|++++ .||.|++||+.++.................+..+.|+ |+|.+|++|+.||.|++|++.++..
T Consensus 221 ~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 221 YLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-----TTTCCEEEECSSSCEECCBCCSSSC
T ss_pred EEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCCCC
Confidence 998888 6999999999887432111222222344456667776 9999999999999999999986543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=258.90 Aligned_cols=252 Identities=15% Similarity=0.127 Sum_probs=202.1
Q ss_pred CcccceeEeEECCC----C---CEEEEeeCCCcEEEEECCCCcE-----EEEecccccccccccccccccccccccceee
Q 006808 3 SSNIRDILTSFSPA----L---DYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTC 70 (630)
Q Consensus 3 s~~V~~~~~~fs~d----g---~~las~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 70 (630)
.++| .+++|+|+ | ++|++|+.||.|++|++.++.. ...+..+.... ....+.+
T Consensus 62 ~~~v--~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~ 126 (397)
T 1sq9_A 62 KSGL--HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------KKHSFWA 126 (397)
T ss_dssp TTCE--EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-------------GGSCEEE
T ss_pred CCcE--EEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc-------------CCCcEEE
Confidence 4577 56699999 9 9999999999999999988876 66665432000 0245677
Q ss_pred EEecccc-cccccccCCcE-EEEEeCCCeEEEEEccC------CeeeE-----Ecc------CCCCCCEEEEEEecCCCE
Q 006808 71 MKWLSVD-RKKKRKLGSSL-LVLGTGGGDVLALAVSA------GQLKW-----RLS------DCHPGGVSAISFATHGSC 131 (630)
Q Consensus 71 ~~w~~~~-~~~~~~~~~~~-l~~~~~~g~v~iwd~~~------~~~~~-----~~~------~~h~~~v~~~~~s~~g~~ 131 (630)
+.|.+.. +. +.. |++++.+|.|++||+.+ +..+. .+. ..|...|.+++|+|++ +
T Consensus 127 ~~~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 199 (397)
T 1sq9_A 127 LKWGASNDRL------LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 199 (397)
T ss_dssp EEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred EEEeeccCCC------CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence 8887211 11 677 99999999999999998 55443 332 3588999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEeec---C---CCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEeec---
Q 006808 132 IYSAGADGMVCEIDPLTGSLLGKFRA---S---TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSG--- 197 (630)
Q Consensus 132 l~s~~~dg~v~iwd~~~~~~~~~~~~---~---~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~~--- 197 (630)
|++++.||.|++||+++++.+..+.. | ...|.+++|+|++.+|++++ +.|++||+.+++.+..+.+
T Consensus 200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~ 279 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH 279 (397)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence 99999999999999999999999998 8 89999999999999999986 4899999999999999988
Q ss_pred ----------CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee-----cC--------------Cce
Q 006808 198 ----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-----EH--------------PAV 248 (630)
Q Consensus 198 ----------h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~~--------------~~~ 248 (630)
|...|.+++|+|++++|++++ .|+.|++||+.+++.. ..+.. .| +..
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (397)
T 1sq9_A 280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI---TTLNMHCDDIEIEEDILAVDEHGDSLAEP 355 (397)
T ss_dssp ------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE---EEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred cccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee---EEEecccCcccchhhhhccccccccccCC
Confidence 999999999999999999988 6999999999987643 22220 12 044
Q ss_pred eeeeEEecCCccCCCC----------CEEEEEecCCcEEEEEcCCcc
Q 006808 249 FMDCRCIDNGGVDDAG----------LYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~----------~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+..+.|+ |++ .+|++++.||.|++|++.+|+
T Consensus 356 ~v~~~~~~-----~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 356 GVFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEEEEE-----CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEec-----cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 55666666 887 799999999999999997763
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=253.45 Aligned_cols=245 Identities=12% Similarity=0.074 Sum_probs=191.3
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCee-eEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCE 143 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~i 143 (630)
.+.+++|.+. +.+|++|+.|+.|++||+.++.. ....+.+|..+|.+++|++ ++++|++|+.|++|++
T Consensus 15 ~V~~v~~s~~---------g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 15 MIHDAQMDYY---------GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp CEEEEEECGG---------GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eEEEeeEcCC---------CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 4566666654 77899999999999999988753 2233458999999999975 4889999999999999
Q ss_pred EeCCCC--ceeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCce---eeEeecCCCCeEEEEEeeC----
Q 006808 144 IDPLTG--SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDN---- 210 (630)
Q Consensus 144 wd~~~~--~~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~---- 210 (630)
||+.++ +....+.+|...|.+++|+|+ +.+|++++ ++|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 999887 456678889999999999997 78999998 8999999987632 3456789999999999997
Q ss_pred -------------CcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC----CEEEEEecC
Q 006808 211 -------------GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISET 273 (630)
Q Consensus 211 -------------~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~s~s~d 273 (630)
+++|++++ .|+.|++||+...... .+...+..+...+..+.|+ |++ .+|++++.|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s~D 237 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCSQD 237 (316)
T ss_dssp -----CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEETT
T ss_pred cccccccccCccccceEEEec-CCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEec-----CCCCCCCceEEEEcCC
Confidence 36788777 6999999999754211 1233344444556667776 775 899999999
Q ss_pred CcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcE
Q 006808 274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI 353 (630)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~ 353 (630)
|.|+||++.+...-. .. ...+..|...|+
T Consensus 238 ~~v~iw~~~~~~~~~------------------~~---------------------------------~~~~~~~~~~v~ 266 (316)
T 3bg1_A 238 GRVFIWTCDDASSNT------------------WS---------------------------------PKLLHKFNDVVW 266 (316)
T ss_dssp CEEEEEECSSTTCCC------------------CB---------------------------------CCEEEECSSCEE
T ss_pred CeEEEEEccCccccc------------------hh---------------------------------hhhhhcCCCcEE
Confidence 999999986531100 00 001225667899
Q ss_pred EEeecCCcceeeccccceeccccceec
Q 006808 354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
+++|+|+|.+| ++++.|+++++|+..
T Consensus 267 ~v~~sp~g~~l-as~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSITANIL-AVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECTTTCCE-EEEESSSCEEEEEEC
T ss_pred EEEEcCCCCEE-EEEcCCCeEEEEEEC
Confidence 99999999999 999999999999863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-28 Score=244.22 Aligned_cols=246 Identities=17% Similarity=0.189 Sum_probs=196.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+| .+++|+|+|++|++|+.|+.|++|+...+........+... ..+..+.+.
T Consensus 86 ~~~V--~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~------ 139 (340)
T 4aow_A 86 SHFV--SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD------------------VLSVAFSSD------ 139 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------------EEEEEECTT------
T ss_pred CCCE--EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc------------------eeEEEEeec------
Confidence 4577 55699999999999999999999999988877666543322 223333332
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC--CEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..|++|+.||.+++||+...........+|...+..++|++++ .++++++.|+.|++||+.+++++..+.+|..
T Consensus 140 ---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~ 216 (340)
T 4aow_A 140 ---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216 (340)
T ss_dssp ---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence 67799999999999999988877666667899999999998864 5688999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc-
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA- 237 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~- 237 (630)
.|++++|+|++++|++++ +.|++||+.+++.+..+.. ...|.++.|+|++.++ +++ .|+.|++||+.+......
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~~~~~~ 293 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAA-TGPSIKIWDLEGKIIVDEL 293 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEE-ETTEEEEEETTTTEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-ecc-CCCEEEEEECCCCeEEEec
Confidence 999999999999999998 8999999999999888874 4689999999987655 555 499999999987653210
Q ss_pred ---eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 238 ---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 238 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
........+...+..+.|+ |+|++|++|+.||.|+|||+.+|.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CCC-------CCCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred cccceeeeccCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 0011112233445666776 999999999999999999999885
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=249.28 Aligned_cols=236 Identities=14% Similarity=0.081 Sum_probs=184.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+...+.+++.+|++|+.||+|++||+.+++.+..+. ...+..+ .|.+ .
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~------------------~~~~----------~-- 87 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTG------------------GEHP----------A-- 87 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTT------------------CCCC----------S--
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceee------------------eeCC----------c--
Confidence 334566788999999999999999999999887765 1222222 2221 2
Q ss_pred EEEEeCCCeEEEEEcc---------CCeeeEEccCCCCCCEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 89 LVLGTGGGDVLALAVS---------AGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~---------~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+++++.|+.|++|+.. +++.+.....+|..+|.+++|+| +++++++++.||+|++||+.+++++..+..
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~ 167 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA 167 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence 7888889998888655 55555555557888999999999 999999999999999999999998776644
Q ss_pred -CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee-eEeec-CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 158 -STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 158 -~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~-~~~~~-h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
+...+.+++|+|++.+|++|+ |.|++||+++++.+ ..+.+ |..+|++++|+|++.+|++++ ++.|++||+++.
T Consensus 168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~ 245 (343)
T 3lrv_A 168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKD 245 (343)
T ss_dssp CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSS
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCC
Confidence 445899999999999999988 89999999999887 78887 999999999999999999887 449999999987
Q ss_pred ccccceeeeeecCCceee--eeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCcc
Q 006808 233 KKQSASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE 285 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~ 285 (630)
+... .+..+..+...+ .+++|+ |+|.+|++++. |+.++||++....
T Consensus 246 ~~~~--~~~~~~~~~~~~~~~~~~~~-----~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 246 VGTL--AYPTYTIPEFKTGTVTYDID-----DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TTCB--SSCCCBC-----CCEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred Ccce--eecccccccccccceEEEEC-----CCCCEEEEecCCCCcEEEEEEcccc
Confidence 6431 111111111111 346676 99999999998 9999999986654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=253.28 Aligned_cols=250 Identities=11% Similarity=0.143 Sum_probs=194.7
Q ss_pred CcccceeEeEECCC---CCEEEEeeCCCcEEEEECCCCc-EEEEecccccccccccccccccccccccceeeEEecc---
Q 006808 3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS--- 75 (630)
Q Consensus 3 s~~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~--- 75 (630)
.++| .+++|+|+ |++|++|+.||.|++||+.+++ .+..+.+|...+ .++.|.+
T Consensus 65 ~~~v--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~ 124 (357)
T 3i2n_A 65 AKPI--KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEII------------------NAIDGIGGLG 124 (357)
T ss_dssp SSCE--EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCE------------------EEEEEESGGG
T ss_pred cCcE--EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccce------------------EEEeeccccc
Confidence 3577 56699999 7999999999999999999887 777777655444 4454432
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCe-eeEEccCCCC----CCEEEEE----EecCCCEEEEEeCCCcEEEEeC
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHP----GGVSAIS----FATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~-~~~~~~~~h~----~~v~~~~----~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
.++. +.+|++++.+|.|++||+.++. .+..+ ..|. ..|.+++ |+|+++++++++.||.|++||+
T Consensus 125 ~s~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 125 IGEG------APEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp CC-C------CCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred cCCC------ccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 1222 7789999999999999999887 44333 2333 3899998 6789999999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEcc---CCCEEEEeC--CeEEEEECCCCceeeEee-----cCCCCeEEEEEeeCCc-EEE
Q 006808 147 LTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGK-YVL 215 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p---~~~~l~~~~--g~i~lwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~-~l~ 215 (630)
++++.... ..|...|.+++|+| ++.++++++ |.|++||+++++.+..+. +|...|++++|+|+++ +|+
T Consensus 198 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 198 RNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp TTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred ccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence 99887554 55788999999999 899999988 899999999887665554 8999999999999998 677
Q ss_pred EEeeCCCeEEEEEcCCCcccc--------------ceeeeeecCCceeeeeEEecCCccCCCCCEEE-EEecCCcEEEEE
Q 006808 216 SSAVGERYIALWRTDGVKKQS--------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL-AISETGVCYIWY 280 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~dg~i~iwd 280 (630)
+++ .|+.|++||+..+.... ...+..+..+...+..+.|+ |++.+|+ +++.||.|+|||
T Consensus 277 ~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 277 TAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-----PDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEE
T ss_pred EEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc-----CCCCeEEEEecCCCcEEEEE
Confidence 766 79999999998654220 01333444445556667776 8999888 899999999999
Q ss_pred cCCccc
Q 006808 281 GQNIEE 286 (630)
Q Consensus 281 ~~~~~~ 286 (630)
+.+++.
T Consensus 351 ~~~~~~ 356 (357)
T 3i2n_A 351 VTKLNK 356 (357)
T ss_dssp ECC---
T ss_pred CCCccc
Confidence 987654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=269.71 Aligned_cols=252 Identities=8% Similarity=0.093 Sum_probs=188.6
Q ss_pred cccceeEeEECCC------CCEEEEeeCCCcEEEEECCCCcEEE--EecccccccccccccccccccccccceeeEEecc
Q 006808 4 SNIRDILTSFSPA------LDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 4 ~~V~~~~~~fs~d------g~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
+.| .+++|+|+ +.+||+|+.||+|+|||+.++.... .+. .. ..... ..+| ...+++++|.+
T Consensus 208 ~~V--~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~----~p~~~---l~~h-~~~v~sv~~s~ 276 (524)
T 2j04_B 208 GEV--WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CE----KPSLT---LSLA-DSLITTFDFLS 276 (524)
T ss_dssp CSE--EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CC----SCSEE---ECCT-TTCEEEEEESS
T ss_pred CcE--EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ec----CceEE---EEcC-CCCEEEEEecC
Confidence 567 44599997 5799999999999999998764320 000 00 00000 1133 24678899975
Q ss_pred cccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEE--EEecCC-CEEEEEeCCCcEEEEeCCCCcee
Q 006808 76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAI--SFATHG-SCIYSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~--~~s~~g-~~l~s~~~dg~v~iwd~~~~~~~ 152 (630)
+..|++|+.||+|++||+.++........+|...|+++ +|+|+| .+|++|+.|++|++||++++++.
T Consensus 277 ----------~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 277 ----------PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp ----------SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred ----------CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 33699999999999999998754434446899999999 578887 89999999999999999998887
Q ss_pred EEeecCCC--CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 153 GKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 153 ~~~~~~~~--~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.++.+|.. .|.+++|+|++..+++++ ++|++||++++.++.++.+|.+.|++++|+|+|++|++++ .|++|++|+
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dgtv~lwd 425 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADGSLIITN 425 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTTEEECCB
T ss_pred cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCCEEEEEe
Confidence 77776653 588999999999999887 7999999999998888999999999999999999999987 699999999
Q ss_pred cCCCccccce---------ee------------------------------eeecCCceeeeeEEecCCccCCCC---CE
Q 006808 229 TDGVKKQSAS---------CV------------------------------LAMEHPAVFMDCRCIDNGGVDDAG---LY 266 (630)
Q Consensus 229 ~~~~~~~~~~---------~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~ 266 (630)
+......... .+ ..+..+...+..+.|+ |++ .+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs-----p~~~~~~~ 500 (524)
T 2j04_B 426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN-----ETSAGGKC 500 (524)
T ss_dssp SCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC-----CSTTTTTE
T ss_pred chHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC-----CCCCccHH
Confidence 7543111000 00 0111112233444555 875 59
Q ss_pred EEEEecCCcEEEEEcC
Q 006808 267 VLAISETGVCYIWYGQ 282 (630)
Q Consensus 267 l~s~s~dg~i~iwd~~ 282 (630)
+++|+.+|.|+||++.
T Consensus 501 lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLS 516 (524)
T ss_dssp EEEECTTSEEEEEECS
T ss_pred HHhhccCceEEEEEcc
Confidence 9999999999999974
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=258.66 Aligned_cols=255 Identities=14% Similarity=0.035 Sum_probs=195.6
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEeccccccccccccc------------------------
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYG------------------------ 56 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s------------------------ 56 (630)
.|+ -+++|+|+|++|+++ .++.|++||+.+|+ .+..+..+........+.
T Consensus 5 ~p~--~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPL--QNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCC--CEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccE--EEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 477 445999999977666 46899999999999 777776443210000000
Q ss_pred ------------ccc-cccccccceeeEEecccccccccccCCcEE-EEEeCCCeEEEEEcc--CCeeeEEcc-CCCCCC
Q 006808 57 ------------NRL-EREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGGDVLALAVS--AGQLKWRLS-DCHPGG 119 (630)
Q Consensus 57 ------------~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g~v~iwd~~--~~~~~~~~~-~~h~~~ 119 (630)
+.. ..+| ...+.+++|.+. +.+| ++|+.+|.|++||+. ++..+..+. ..|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d---------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 151 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPI-YSYIRNLRLTSD---------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKR 151 (450)
T ss_dssp ------------------CC-CCCEEEEEECTT---------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSC
T ss_pred ccccccCccccCCCCCCCcc-CCceEEEEEcCC---------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCC
Confidence 000 0011 225889999886 5554 889999999999999 777665543 257789
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE----EeecCCCCeEEEEEccC---CCEEEEeC--CeEEEEECCCCc
Q 006808 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----KFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 120 v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~l~~~p~---~~~l~~~~--g~i~lwd~~~~~ 190 (630)
|++++|+|+|++|++++.+|.|++|++.+++... .+.+|...|.+++|+|+ +++|++++ +.|++||+.+++
T Consensus 152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~ 231 (450)
T 2vdu_B 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF 231 (450)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence 9999999999999999999999999998887554 77889999999999999 99999988 899999999998
Q ss_pred eeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-----------------------CC
Q 006808 191 KMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------------------HP 246 (630)
Q Consensus 191 ~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------~~ 246 (630)
.+.. +.+|...|++++|+ ++++|++++ .|+.|++||+.+++.. ..+... ..
T Consensus 232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL---STFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE---EEEECHHHHGGGCCTTSBC----------CB
T ss_pred eeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe---eeecchhhhhhhhhhcccccccccccccccc
Confidence 8877 56899999999999 999999988 6999999999987643 112111 11
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG 281 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~ 281 (630)
...+..+.+. |++.+|++++ .++.|+||++
T Consensus 307 ~~~v~~i~~~-----~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 307 EFAVSKIIKS-----KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCCEEEEEEC-----SSSSEEEEEETTCSEEEEEEE
T ss_pred eEEEEEEEEe-----CCCCEEEEEECCCCeEEEEEe
Confidence 2234455665 8999999998 8999999998
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=258.36 Aligned_cols=196 Identities=11% Similarity=0.152 Sum_probs=153.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| .+++|+|+|++||+|+.||+|+|||+.++. ....+.+|.. .+.++.|.+.
T Consensus 55 ~~~v--~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~--- 111 (377)
T 3dwl_C 55 DKIV--TCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR------------------AATFVRWSPN--- 111 (377)
T ss_dssp SSCE--EEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS------------------CEEEEECCTT---
T ss_pred CceE--EEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC------------------ceEEEEECCC---
Confidence 4577 566999999999999999999999999877 4444444433 4556666653
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCee---eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC---------
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------- 147 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~--------- 147 (630)
+.+|++|+.+|.|++||+.++.. ...+...|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 112 ------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 112 ------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred ------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 67899999999999999998873 445543499999999999999999999999999999985
Q ss_pred ---------CCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce----eeEeecCCCCeEEEEEeeCCc
Q 006808 148 ---------TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGK 212 (630)
Q Consensus 148 ---------~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~ 212 (630)
.++++..+ .|...|.+++|+|++++|++++ |.|++||+.+++. +..+.+|..+|.+++|+|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 264 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA 264 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC
Confidence 35566667 8889999999999999999988 8999999999987 788899999999999999999
Q ss_pred EEEEEeeCCCeEEEEEcC
Q 006808 213 YVLSSAVGERYIALWRTD 230 (630)
Q Consensus 213 ~l~~~~~~d~~i~vwd~~ 230 (630)
+|++++ .++ +.+|+..
T Consensus 265 ~l~~~~-~~~-~~~~~~~ 280 (377)
T 3dwl_C 265 IVAAGY-NYS-PILLQGN 280 (377)
T ss_dssp EEEEES-SSS-EEEECCC
T ss_pred EEEEEc-CCc-EEEEEeC
Confidence 887765 455 5577765
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=260.05 Aligned_cols=242 Identities=15% Similarity=0.216 Sum_probs=202.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++ +|++|+.||+|++||+.+++.+..+.+|... +.++.|.+...
T Consensus 162 ~~~V--~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~------------------v~~l~~~~~~~---- 216 (464)
T 3v7d_B 162 DGGV--WALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST------------------VRCLDIVEYKN---- 216 (464)
T ss_dssp SSCE--EEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC------------------EEEEEEEESSS----
T ss_pred CcCE--EEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc------------------cEEEEEecCCC----
Confidence 4678 556999998 9999999999999999999999888765543 44566654221
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeee----------------------EEccCCCCCCEEEEEEecCCCEEEEEeCCCc
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLK----------------------WRLSDCHPGGVSAISFATHGSCIYSAGADGM 140 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~----------------------~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 140 (630)
+.++++|+.+|.|++||+.++... .....+|...|.++ +++++++++++.||.
T Consensus 217 ---~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~ 291 (464)
T 3v7d_B 217 ---IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNT 291 (464)
T ss_dssp ---CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSC
T ss_pred ---CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCe
Confidence 678999999999999999877532 23445788888887 567889999999999
Q ss_pred EEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
|++||+.+++++..+.+|...|.+++|+|++.++++++ |.|++||+.+++++..+.+|...|.++.|+ +.++++++
T Consensus 292 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 369 (464)
T 3v7d_B 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 369 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe
Confidence 99999999999999999999999999999999999998 899999999999999999999999999997 57888887
Q ss_pred eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
.|+.|++||+.+.... .... ........+++ |++.+|++|+ ||.|++||+.+++.+..
T Consensus 370 -~dg~v~vwd~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 370 -ADGSIRGWDANDYSRK-----FSYH-HTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp -TTSEEEEEETTTCCEE-----EEEE-CTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred -CCCcEEEEECCCCcee-----eeec-CCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 6999999999986532 2222 33344555665 8899999988 89999999999988764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-27 Score=250.05 Aligned_cols=243 Identities=16% Similarity=0.278 Sum_probs=199.5
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .+++|+|+|++||+|+.||+|+|||+.+++++..+.+|.. .+.++.|.
T Consensus 148 ~~V--~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~------------------~v~~~s~~--------- 198 (420)
T 4gga_A 148 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA------------------RVGSLSWN--------- 198 (420)
T ss_dssp CCE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS------------------CEEEEEEE---------
T ss_pred CcE--EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC------------------ceEEEeeC---------
Confidence 457 5669999999999999999999999999999988875543 34455553
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc----eeEEeecCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAST 159 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~ 159 (630)
+.++++|+.++.+++||............+|...+..+.|+|+|.++++++.|+.+++|+..+++ .+..+..|.
T Consensus 199 --~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 199 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred --CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence 56799999999999999988766555556899999999999999999999999999999998765 355677788
Q ss_pred CCeEEEEEccCCC-EEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe-eCCCeEEEEEcCCCc
Q 006808 160 KGISCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK 233 (630)
Q Consensus 160 ~~v~~l~~~p~~~-~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~-~~d~~i~vwd~~~~~ 233 (630)
..|.+++|+|.+. ++++++ ++|++||+.+++++..+..| ..+.++.|+|++..+++++ ..|+.|++||+.+++
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 9999999999654 555543 79999999999998888754 5788999999999888764 358999999999876
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
. +..+..+...+..++|+ |+|.+|++|+.||+|+|||+......+
T Consensus 356 ~-----v~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 356 K-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred E-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCCccc
Confidence 3 33444444556677777 999999999999999999987665443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=252.65 Aligned_cols=246 Identities=13% Similarity=0.130 Sum_probs=196.9
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEcc--CCeeeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVC 142 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~--~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~ 142 (630)
.+++++|.+. +.+|++|+.+|.|++|++. ++..+..+ .+|...|++++|+++ +++|++++.||.|+
T Consensus 13 ~v~~~~~s~~---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 13 LIHDAVLDYY---------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp CEEEEEECSS---------SSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEEEEEcCC---------CCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 4556666554 7789999999999999998 44444344 579999999999976 89999999999999
Q ss_pred EEeCCCCc--eeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEee-----
Q 006808 143 EIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD----- 209 (630)
Q Consensus 143 iwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp----- 209 (630)
+||+.+++ .+..+..|...|.+++|+|+ +.++++++ +.|++||+.++. ....+.+|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999987 77778889999999999999 89999988 899999998874 3445678999999999999
Q ss_pred --------CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC---CCEEEEEecCCcEEE
Q 006808 210 --------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYI 278 (630)
Q Consensus 210 --------~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~dg~i~i 278 (630)
++.+|++++ .|+.|++||++.+... ......+..+...+..+.|+ |+ +.+|++++.||.|++
T Consensus 163 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~~~~s-----p~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp -------CTTCEEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEE
T ss_pred cccccCCCCCCEEEEEe-CCCeEEEEEecCCCcc-eeeEEEEecccCcEeEEEEC-----CCCCCCCeEEEEeCCCEEEE
Confidence 688998887 6999999999876532 12233444445556677776 88 899999999999999
Q ss_pred EEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
||+.++.... ..... ....|...|.+++|+
T Consensus 236 wd~~~~~~~~-----~~~~~---------------------------------------------~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 236 WTQDNEQGPW-----KKTLL---------------------------------------------KEEKFPDVLWRASWS 265 (379)
T ss_dssp EEESSTTSCC-----EEEES---------------------------------------------SSSCCSSCEEEEEEC
T ss_pred EeCCCCCccc-----eeeee---------------------------------------------ccccCCCcEEEEEEc
Confidence 9987653210 00000 001466689999999
Q ss_pred CCcceeeccccceeccccceec
Q 006808 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|+|.+| ++++.|+.+++|++.
T Consensus 266 ~~g~~l-~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 266 LSGNVL-ALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSCCE-EEEESSSSEEEEEEE
T ss_pred CCCCEE-EEecCCCcEEEEeCC
Confidence 999999 899899999999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=244.57 Aligned_cols=242 Identities=14% Similarity=0.152 Sum_probs=202.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++++|++++.||.|++||+.+++.+..+. +.. .+.++.|.+.
T Consensus 74 ~~~v--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~------------------~v~~~~~~~~------ 126 (369)
T 3zwl_B 74 TGTI--WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPV------------------PVKRVEFSPC------ 126 (369)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSS------------------CEEEEEECTT------
T ss_pred CCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCC------------------CeEEEEEccC------
Confidence 4577 556999999999999999999999999999888775 322 4556666654
Q ss_pred ccCCcEEEEEeCC-----CeEEEEEccCCee-----------eEEccCCCCC--CEEEEEEecCCCEEEEEeCCCcEEEE
Q 006808 83 KLGSSLLVLGTGG-----GDVLALAVSAGQL-----------KWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEI 144 (630)
Q Consensus 83 ~~~~~~l~~~~~~-----g~v~iwd~~~~~~-----------~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~v~iw 144 (630)
+.++++++.+ |.|.+||+..+.. ...+ ..|.. .+.+++|+|++++|++++.||.|++|
T Consensus 127 ---~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 127 ---GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp ---SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred ---CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 7789999998 9999999987642 1111 24555 89999999999999999999999999
Q ss_pred eCCC-CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 145 DPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 145 d~~~-~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
|+.+ ++.+..+..|...|.+++|+|++.+|++++ +.|++||+.+++.+..+. +...+.+++|+|+++++++++ .+
T Consensus 203 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~ 280 (369)
T 3zwl_B 203 DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-GQ 280 (369)
T ss_dssp ETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-CC
T ss_pred ECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-cC
Confidence 9998 788889999999999999999999999987 899999999999888887 788999999999999999988 46
Q ss_pred C--------------eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 222 R--------------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 222 ~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
+ .+++||+.+++.. ..+..+...+..+.|+ |++.+|++++.||.|++|++..+...
T Consensus 281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 281 EAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAIS-----PQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp C-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred CCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEEC-----CCCCEEEEEcCCCeEEEEECccccch
Confidence 6 8999999887643 2333344456667776 99999999999999999999876543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=254.69 Aligned_cols=248 Identities=13% Similarity=0.196 Sum_probs=194.3
Q ss_pred CcccceeEeEECCC-CCEEEEeeCCCcEEEEECCC----------CcEEEEecccccccccccccccccccccccceeeE
Q 006808 3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLK----------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (630)
Q Consensus 3 s~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (630)
.++| .+++|+|+ +.+||+|+.||.|+||++.+ ......+.+|.. .++++
T Consensus 128 ~~~v--~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l 187 (430)
T 2xyi_A 128 EGEV--NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK------------------EGYGL 187 (430)
T ss_dssp SSCC--SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS------------------CCCCE
T ss_pred CCcE--EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC------------------CeEEE
Confidence 4578 45599997 68999999999999999976 344555544433 45667
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCCeee------EEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEE
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEI 144 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~------~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iw 144 (630)
.|.+.. ..+|++|+.+|.|++|++.++... .....+|...|.+++|+| ++..|++++.||.|++|
T Consensus 188 ~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 188 SWNPNL--------NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp EECTTS--------TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EeCCCC--------CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 776653 338999999999999999874321 123357999999999999 67889999999999999
Q ss_pred eCCCC---ceeEEeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCC-CceeeEeecCCCCeEEEEEeeCCcE-EEE
Q 006808 145 DPLTG---SLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKY-VLS 216 (630)
Q Consensus 145 d~~~~---~~~~~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~-l~~ 216 (630)
|++++ +.+..+..|...|++++|+|++. ++++|+ |.|++||+++ +.++..+.+|...|++++|+|++++ |++
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 99987 57778888999999999999887 577776 8999999998 5678889999999999999999975 555
Q ss_pred EeeCCCeEEEEEcCCCcccc---------ceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEecCCcEEEEEcCCc
Q 006808 217 SAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~ 284 (630)
++ .|+.|++||+....... ....+....+...+..+.|+ |++. +|++++.||.|+||++...
T Consensus 340 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 340 SG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECHH
T ss_pred Ee-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeEcccc
Confidence 55 79999999998732110 01334444444455666666 8888 8999999999999998654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=242.80 Aligned_cols=295 Identities=9% Similarity=-0.018 Sum_probs=204.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|||++||+|+.++ ++||++.++........+ .+..+.|.+..
T Consensus 19 ~~~V--~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----- 70 (355)
T 3vu4_A 19 SNPV--TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--------------------HLSKVRMLHRT----- 70 (355)
T ss_dssp CCCC--CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--------------------CCCEEEECTTS-----
T ss_pred CCce--EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--------------------CeEEEEEcCCC-----
Confidence 4678 5669999999999998775 789999887765443211 13344444332
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-ceeEEeecCCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG 161 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~ 161 (630)
..++++++.++.|++||+.+++.+..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. +
T Consensus 71 ---~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~ 139 (355)
T 3vu4_A 71 ---NYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F 139 (355)
T ss_dssp ---SEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred ---CEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence 3344667788999999999999887663 67799999998763 4444 4789999999988 77776665 4
Q ss_pred eEEEEEccCCCEEEEe--C--CeEEEEECCCCc----------------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 162 ISCMAVSSDGKMLATA--A--GQLKTFNCSDHK----------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~--~--g~i~lwd~~~~~----------------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
...++++| .+++++ + |.|++||+.++. .+..+.+|..+|++++|+|+|++|++++ .|
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~d 216 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-QD 216 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-CC
Confidence 45667777 566664 3 899999999865 2678899999999999999999999988 69
Q ss_pred Ce-EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeecc
Q 006808 222 RY-IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (630)
Q Consensus 222 ~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (630)
++ |++||+.+++.. ..+..+.+...+..+.|+ |++.+|++++.||.|+|||+..+...+... ...
T Consensus 217 ~~~v~iwd~~~~~~~---~~~~~g~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~-----~~~- 282 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLV---REFRRGLDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDNKRHA-----LKG- 282 (355)
T ss_dssp CSEEEEEETTTCCEE---EEEECTTCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCCCSEE-----TTT-
T ss_pred CCEEEEEECCCCcEE---EEEEcCCCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCccccc-----ccc-
Confidence 98 999999987643 222223134456667777 999999999999999999997653211110 000
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.+.+. .++. .+. ...+.-...+......++|++||.+| ++++.|+.+++|++.
T Consensus 283 -~~~~~-----------~~~~---~~~-----------~~~~~~~~~~~~~~~~~a~~~d~~~l-~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 283 -WINMK-----------YFQS---EWS-----------LCNFKLSVDKHVRGCKIAWISESSLV-VVWPHTRMIETFKVV 335 (355)
T ss_dssp -TEECC-----------CCCC---SSC-----------SEEEECCCCTTCCCCEEEESSSSEEE-EEETTTTEEEEEEEE
T ss_pred -eeecc-----------cccc---ccc-----------eeEEEeccCCCCCceEEEEeCCCCEE-EEEeCCCeEEEEEEE
Confidence 00000 0000 000 00000001122334679999999999 888889999999874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=249.16 Aligned_cols=239 Identities=15% Similarity=0.180 Sum_probs=188.1
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+| ++++|++|+.|+.|++||+.+ .....+..+. + ....+.+++|.+.
T Consensus 118 ~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--------------~-~~~~v~~~~~~~~----- 174 (383)
T 3ei3_B 118 GDAI--TGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD--------------S-WDYWYCCVDVSVS----- 174 (383)
T ss_dssp TCBE--EEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC--------------C-SSCCEEEEEEETT-----
T ss_pred CCce--eEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC--------------C-CCCCeEEEEECCC-----
Confidence 4577 5669999 789999999999999999985 5555554321 1 1235677888765
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC----CceeEEee
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT----GSLLGKFR 156 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~----~~~~~~~~ 156 (630)
+.+|++|+.+|.|++||+. ++.+..+ .+|...|.+++|+|+++ +|++++.|+.|++||+++ +.++..+
T Consensus 175 ----~~~l~~~~~d~~i~i~d~~-~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 247 (383)
T 3ei3_B 175 ----RQMLATGDSTGRLLLLGLD-GHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM- 247 (383)
T ss_dssp ----TTEEEEEETTSEEEEEETT-SCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-
T ss_pred ----CCEEEEECCCCCEEEEECC-CCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-
Confidence 7789999999999999994 5555455 47999999999999999 899999999999999987 6666666
Q ss_pred cCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEeecCC-----------------CCeEEEEEeeCCcEEEE
Q 006808 157 ASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----------------GAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 157 ~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----------------~~v~~l~~sp~~~~l~~ 216 (630)
.|...|.+++|+| ++.+|++++ +.|++||+++++.+..+.+|. ..+..++|+|++++ +
T Consensus 248 ~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s 325 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--L 325 (383)
T ss_dssp ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--C
T ss_pred cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--c
Confidence 5889999999999 999999988 899999999988877776553 23444666777766 4
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
++ .|+.|++||+.+++.. ..+...+....+.++.|+ |++.+|++|+ ||.|+|||+.+
T Consensus 326 ~s-~d~~i~iwd~~~~~~~---~~l~~~~~~~~~~~~~~s-----~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 326 LN-DKRTIDIYDANSGGLV---HQLRDPNAAGIISLNKFS-----PTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TT-CCCCEEEEETTTCCEE---EEECBTTBCSCCCEEEEC-----TTSSEEEEEE-TTEEEEEECC-
T ss_pred cC-CCCeEEEEecCCCcee---eeecCCCCCceEEEEEEe-----cCccEEEEec-CCcEEEEecCC
Confidence 44 6999999999987743 233322345566676777 9999999997 99999999864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=250.17 Aligned_cols=246 Identities=14% Similarity=0.210 Sum_probs=197.3
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCC-------cEEEEecccccccccccccccccccccccceeeEEec
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~ 74 (630)
.++| .+++|+| ++++||+|+.||+|+|||+.++ ..+..+.+|.. .+.++.|.
T Consensus 81 ~~~V--~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~ 140 (402)
T 2aq5_A 81 TAPV--LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK------------------RVGIVAWH 140 (402)
T ss_dssp SSCE--EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS------------------CEEEEEEC
T ss_pred CCCE--EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC------------------eEEEEEEC
Confidence 4678 5569999 9999999999999999999987 44555554433 45667776
Q ss_pred ccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
+.. ..+|++|+.||.|++||+.+++.+..+. .+|...|.+++|+|++++|++++.||.|++||+++++.+.
T Consensus 141 p~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 141 PTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA 212 (402)
T ss_dssp SSB--------TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred cCC--------CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence 653 3689999999999999999999887764 5799999999999999999999999999999999999999
Q ss_pred Ee-ecCCCC-eEEEEEccCCCEEEEe---C--CeEEEEECCCCce-eeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 154 KF-RASTKG-ISCMAVSSDGKMLATA---A--GQLKTFNCSDHKK-MQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 154 ~~-~~~~~~-v~~l~~~p~~~~l~~~---~--g~i~lwd~~~~~~-~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
.+ ..|... +.++.|+|++.+|+++ + +.|++||++++.. +.... .|...+.+++|+|++++|+++++.|+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 88 677765 8999999999999998 4 8999999998764 33333 5778899999999999998777579999
Q ss_pred EEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
++|++.+++.. ........+ ...+..+.|+ |++.++++ .++.+++|++.++.
T Consensus 293 ~i~d~~~~~~~-~~~l~~~~~-~~~v~~~~~s-----p~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 293 RYFEITSEAPF-LHYLSMFSS-KESQRGMGYM-----PKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEECSSTTC-EEEEEEECC-SSCCSEEEEC-----CGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEecCCCcc-eEeeccccc-CCcccceEEe-----ccccccee--cceeEEEEEcCCCc
Confidence 99999987631 011222222 3445566666 88888764 56799999987653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-27 Score=232.93 Aligned_cols=237 Identities=13% Similarity=0.204 Sum_probs=191.1
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC---cEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++| .+++|+|++++|++|+.||.|++|++... +....+.+|. ..+.++.|.
T Consensus 59 ~~~v--~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~------------------~~i~~~~~~----- 113 (313)
T 3odt_A 59 QGFL--NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQ------------------GNVCSLSFQ----- 113 (313)
T ss_dssp SSCE--EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCS------------------SCEEEEEEE-----
T ss_pred CccE--EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcc------------------cCEEEEEec-----
Confidence 4567 55699999999999999999999998754 3344444332 245667761
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeec-
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA- 157 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~- 157 (630)
+..+++++.+|.|++|| .+.....+ ..|...|.++.|+| +++++++++.||.|++|| .++....+..
T Consensus 114 ------~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~ 182 (313)
T 3odt_A 114 ------DGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI 182 (313)
T ss_dssp ------TTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred ------CCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence 66899999999999999 55555444 46999999999998 999999999999999999 5667777777
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|...+.+++|+|++. +++++ |.|++||+++++.+..+.+|..+|++++|+|++ .+++++ .|+.|++||+.+++..
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~ 259 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKENGSLK 259 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence 888999999999998 65655 899999999999999999999999999999999 577777 6999999999988643
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
..+..+...+..+.|+ |++. +++++.||.|++|++.+++.+..
T Consensus 260 -----~~~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 260 -----QVITLPAISIWSVDCM-----SNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp -----EEEECSSSCEEEEEEC-----TTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred -----EEEeccCceEEEEEEc-----cCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 2333344455666676 8888 66799999999999988766543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=255.27 Aligned_cols=246 Identities=15% Similarity=0.178 Sum_probs=184.0
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+| ++++|++|+.||+|+|||+.++........+. ....+.++.|.+.
T Consensus 164 ~~~V--~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~----- 220 (435)
T 4e54_B 164 GGSI--TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT----------------INIWFCSLDVSAS----- 220 (435)
T ss_dssp SCCC--CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS----------------CSCCCCCEEEETT-----
T ss_pred CCCE--EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC----------------CCccEEEEEECCC-----
Confidence 4688 5559998 78999999999999999998655433222111 1223456666654
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEe---ec
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF---RA 157 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~---~~ 157 (630)
+.+|++|+.+|.|++||+.... +.. +.+|...|++++|+|++. +|++|+.|++|++||+++++....+ .+
T Consensus 221 ----~~~l~~g~~dg~i~~wd~~~~~-~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~ 294 (435)
T 4e54_B 221 ----SRMVVTGDNVGNVILLNMDGKE-LWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP 294 (435)
T ss_dssp ----TTEEEEECSSSBEEEEESSSCB-CCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCB
T ss_pred ----CCEEEEEeCCCcEeeeccCcce-eEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeee
Confidence 7789999999999999997543 333 358999999999999876 6889999999999999887654443 56
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCC------CeEEEEEeeCCcEEEEEee----------
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG------AVRFMTFSDNGKYVLSSAV---------- 219 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~------~v~~l~~sp~~~~l~~~~~---------- 219 (630)
|...|++++|+|+|.+|++++ |.|++||+.++.....+..|.. .+..+.|+|++.+++++++
T Consensus 295 h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 374 (435)
T 4e54_B 295 HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTP 374 (435)
T ss_dssp CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSST
T ss_pred ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEe
Confidence 888999999999999999998 8999999999988777765542 2334567777766666543
Q ss_pred -CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 220 -GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 220 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
.++.|++||..+++.. ..+...|...+..+..|+ |+|.+|++|+ |+.|+||++++++.
T Consensus 375 ~~~~~i~iwd~~~g~~~---~~l~~~~~~~v~s~~~fs-----pdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 375 YELRTIDVFDGNSGKMM---CQLYDPESSGISSLNEFN-----PMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp TCCCCEEEECSSSCCEE---EEECCSSCCCCCCEEEEC-----TTSSCEEEEC-SSEEEECCCC----
T ss_pred cCCCEEEEEECCCCcEE---EEEeCCCCCcEEEEEEEC-----CCCCEEEEEc-CCcEEEEECCcCee
Confidence 3457999999988744 333334555555555677 9999998876 78999999988865
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=248.05 Aligned_cols=255 Identities=13% Similarity=0.151 Sum_probs=195.8
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC----------CeeeEEccCCCCCCEEEEEEecCCC-EEEE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------GQLKWRLSDCHPGGVSAISFATHGS-CIYS 134 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~----------~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s 134 (630)
..+++++|.+.+ +.+|++++.+|.|++|++.+ ......+ .+|...|++++|+|++. +|++
T Consensus 129 ~~v~~l~~~p~~--------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 129 GEVNRARYMPQN--------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp SCCSEEEEETTE--------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEE
T ss_pred CcEEEEEECCCC--------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEE
Confidence 467788888754 56899999999999999986 3444444 47999999999999988 9999
Q ss_pred EeCCCcEEEEeCCCCce-------eEEeecCCCCeEEEEEcc-CCCEEEEeC--CeEEEEECCCC---ceeeEeecCCCC
Q 006808 135 AGADGMVCEIDPLTGSL-------LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA 201 (630)
Q Consensus 135 ~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~---~~~~~~~~h~~~ 201 (630)
|+.||.|++||+.++.. ...+..|...|.+++|+| ++.+|++++ |.|++||++++ +.+..+..|...
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 99999999999987432 456778999999999999 677888876 89999999987 567778899999
Q ss_pred eEEEEEeeCCcE-EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC-CEEEEEecCCcEEEE
Q 006808 202 VRFMTFSDNGKY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIW 279 (630)
Q Consensus 202 v~~l~~sp~~~~-l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~iw 279 (630)
|++++|+|++.+ +++++ .|+.|++||++..... +..+..+...+..+.|+ |++ .+|++++.||.|+||
T Consensus 280 v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~----~~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLK----LHSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHVW 349 (430)
T ss_dssp EEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSC----SEEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEEE
T ss_pred eEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCC----eEEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEEE
Confidence 999999999985 55555 7999999999885422 23333334445566666 877 578999999999999
Q ss_pred EcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC
Q 006808 280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (630)
|+......... . . ..++ ....+....+|...|.+++|+|
T Consensus 350 d~~~~~~~~~~---------------~------~----~~~~----------------~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 350 DLSKIGEEQST---------------E------D----AEDG----------------PPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp EGGGTTCCCCH---------------H------H----HHHC----------------CTTEEEECCCCSSCEEEEEECS
T ss_pred eCCCCccccCc---------------c------c----cccC----------------CcceEEEcCCCCCCceEEEECC
Confidence 98653221100 0 0 0000 0112223457888999999999
Q ss_pred Ccc-eeeccccceeccccceecc
Q 006808 360 DGV-LLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 360 dg~-~l~~s~s~d~~~~~w~~~~ 381 (630)
++. +| ++++.|+.+++|++..
T Consensus 389 ~~~~~l-~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 NEPWII-CSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSTTEE-EEEETTSEEEEEEECH
T ss_pred CCCCEE-EEEECCCCEEEeEccc
Confidence 999 66 9999999999999854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=246.05 Aligned_cols=264 Identities=16% Similarity=0.241 Sum_probs=209.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+ +++|++|+.||+|++||+.+++.+..+.+|.. .+.++.|.
T Consensus 159 ~~~v--~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~------------------~v~~~~~~-------- 208 (445)
T 2ovr_B 159 TGGV--WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTS------------------TVRCMHLH-------- 208 (445)
T ss_dssp SSCE--EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSS------------------CEEEEEEE--------
T ss_pred CCCE--EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC------------------cEEEEEec--------
Confidence 4567 555786 67999999999999999999999988875543 34455552
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++|+.+|.|++||+.+++.+..+ .+|...|.++.| +++++++++.||.|++||+.+++++..+.+|...|
T Consensus 209 ---~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 209 ---EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp ---TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred ---CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 556999999999999999999887666 479999999999 78899999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
.+++| ++.++++++ |.|++||+.+++.+..+.+|...+.++.++ +.++++++ .|+.|++||+.+++.. ..
T Consensus 283 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~---~~ 354 (445)
T 2ovr_B 283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL---QT 354 (445)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE---EE
T ss_pred EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEE---EE
Confidence 99999 778888887 899999999999999999999999988775 66888887 6999999999887633 12
Q ss_pred eee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC-----ceeEEeeccCCCcccccchhhhh
Q 006808 241 LAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK-----ATKILSSSEDVNSKSQKSATAAI 314 (630)
Q Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i 314 (630)
+.. ..+...+.++.+ ++.+|++|+.||.|++||+.+++.+.... .....+.+ ..++|++. .+
T Consensus 355 ~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~----~l 422 (445)
T 2ovr_B 355 LQGPNKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR-IRASNTKL----VC 422 (445)
T ss_dssp ECSTTSCSSCEEEEEE-------CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE-EEECSSEE----EE
T ss_pred EccCCCCCCCEEEEEE-------CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE-EEecCCEE----EE
Confidence 211 113334445554 36899999999999999999998766541 11111111 11567666 77
Q ss_pred hhcccccc
Q 006808 315 FAAKLQDI 322 (630)
Q Consensus 315 ~~~~~d~~ 322 (630)
++|+.||.
T Consensus 423 a~~~~dg~ 430 (445)
T 2ovr_B 423 AVGSRNGT 430 (445)
T ss_dssp EEECSSSS
T ss_pred EEcccCCC
Confidence 88888764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=241.84 Aligned_cols=193 Identities=18% Similarity=0.182 Sum_probs=158.8
Q ss_pred EeEECCCCCEEEEee--CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+++|||||+++|+++ .|++|+|||+.+++++..+. |...+. +++|.|. +.
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~------------------~v~fspd---------g~ 189 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVK------------------DLHFSTD---------GK 189 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCC------------------EEEECTT---------SS
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceE------------------EEEEccC---------Cc
Confidence 459999999987554 68999999999999988775 333444 4555443 77
Q ss_pred EEEEEeCCCeEEEEEccCCeee-EEccCCCCCCEEEEEEecCCCEEEEEeCCC----cEEEEeCCCCce----eEEeecC
Q 006808 88 LLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCEIDPLTGSL----LGKFRAS 158 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg----~v~iwd~~~~~~----~~~~~~~ 158 (630)
++++++. +.+.+|+..++..+ .....+|...|.+++|+|+|+++++++.|+ .++.|++..+.. ...+..|
T Consensus 190 ~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T 4h5i_A 190 VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR 268 (365)
T ss_dssp EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence 7888874 45667776666654 344567889999999999999999999887 688899876643 3457788
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
...|++++|+|+|++||+|+ ++|+|||+.+++++.++ .+|..+|++++|+|||++|++++ .|++|+||++...
T Consensus 269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AANTIHIIKLPLN 344 (365)
T ss_dssp CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTSEEEEEECCTT
T ss_pred CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence 89999999999999999998 89999999999998886 78999999999999999999988 6999999999754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=242.29 Aligned_cols=280 Identities=15% Similarity=0.080 Sum_probs=213.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|+|++.++++++.++.|++||+.+++....+.... ..+| ...+.++.|.+. +.+
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~-~~~v~~~~~~~~---------~~~ 183 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK------------YKKK-LGFVETISIPEH---------NEL 183 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH------------HHTT-CCEEEEEEEGGG---------TEE
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc------------cccc-CCceeEEEEcCC---------CEE
Confidence 456999988888888889999999999998876432100 0122 224667777443 678
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
+++++.++.|++||+.+++.+..+. .|...+.+++|+|+++.+++ ++.|+.|++||+.+++.+..+..+ ..+.+++|
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~ 261 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLL 261 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEE
T ss_pred EEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEE
Confidence 9999999999999999988876664 68889999999999998854 457999999999999988887754 46899999
Q ss_pred ccCCCEEEEeC----------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 168 SSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 168 ~p~~~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+|+++++++++ +.|++||+.+++.+..+ .|...+.+++|+|+++++++++..++.|++||+.+++..
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-- 338 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-- 338 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--
Confidence 99999888765 38999999999877665 366688999999999887776667999999999976533
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEec---------------CCcEEEEEcCCcccccccCceeEEeeccCC
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------------TGVCYIWYGQNIEELRNTKATKILSSSEDV 302 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 302 (630)
..+.+... +..+.++ |+|.+|++++. ||.|++||..+++.+...
T Consensus 339 ---~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~------------ 397 (433)
T 3bws_A 339 ---KSIPVFDK-PNTIALS-----PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW------------ 397 (433)
T ss_dssp ---EEEECSSS-EEEEEEC-----TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE------------
T ss_pred ---EEecCCCC-CCeEEEc-----CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe------------
Confidence 23333333 4456666 89999888876 467888887655432211
Q ss_pred CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
.. ...+.+++|+|||++|.++++.|+.+++|++.
T Consensus 398 -------------------------------------------~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 398 -------------------------------------------EA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp -------------------------------------------EC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred -------------------------------------------cC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 11 22467899999999984445569999999874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-26 Score=228.21 Aligned_cols=240 Identities=15% Similarity=0.243 Sum_probs=193.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .+++|+|+|++||+|+.||+|+||++.+++++..+.+|...+. ++.+.
T Consensus 68 ~~V--~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~------------------~~~~~--------- 118 (318)
T 4ggc_A 68 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG------------------SLSWN--------- 118 (318)
T ss_dssp CCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE------------------EEEEE---------
T ss_pred CeE--EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE------------------EeecC---------
Confidence 457 5669999999999999999999999999999988876543222 22221
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce----eEEeecCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRAST 159 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~ 159 (630)
+..+++++.++.+.+|+...+........+|...+..+.|+++++++++++.|++|++||+.+++. ......+.
T Consensus 119 --~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 119 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred --CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence 667999999999999999887665555668999999999999999999999999999999987753 34456677
Q ss_pred CCeEEEEEccCCCEEE---EeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe-eCCCeEEEEEcCCCc
Q 006808 160 KGISCMAVSSDGKMLA---TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK 233 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~---~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~-~~d~~i~vwd~~~~~ 233 (630)
..|.+++++|++..++ +++ +.|++||........... +...+..+.|+|++..+++++ +.|+.|++||+.+++
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 8999999999765433 333 799999998887665544 777899999999999887754 358999999999876
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
. +..+..+...+.++.|+ |+|.+|++|+.||+|+|||+....
T Consensus 276 ~-----~~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 276 K-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCCC
T ss_pred E-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCC
Confidence 4 33444445556677777 999999999999999999986543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-27 Score=242.61 Aligned_cols=232 Identities=12% Similarity=0.025 Sum_probs=170.3
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeE----EccCCCCCCEEEEEEec--------CCCEEEEEeCCCcEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKW----RLSDCHPGGVSAISFAT--------HGSCIYSAGADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~----~~~~~h~~~v~~~~~s~--------~g~~l~s~~~dg~v~iwd~~~~~~~~ 153 (630)
+.++++|+.|++|+|||..++.... ..+.+|.+.|++++|+| ++++|++|+.|++|++||+.++.++.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 5689999999999999999886532 34578999999999998 78899999999999999999998888
Q ss_pred EeecCCCCeEEEEEccCCC-EEEEeC--CeEEEEECCCCceeeE-------------------------eecCCCCeEEE
Q 006808 154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK-------------------------FSGHPGAVRFM 205 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~-~l~~~~--g~i~lwd~~~~~~~~~-------------------------~~~h~~~v~~l 205 (630)
.+..|..+|.+++|+|++. +|++++ ++|++||+++++.... ..+|...+.++
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 8888999999999999875 788877 8999999988754322 23577788999
Q ss_pred EEe-eCCcEEEEEeeCCCeEEEEEcCCCccccce--------------eeeeecCCceeeeeEEecCCccCCCCCEEEEE
Q 006808 206 TFS-DNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI 270 (630)
Q Consensus 206 ~~s-p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 270 (630)
.|+ |+++.+++++ .|+.+++||+..++..... ...........+...+++ .+++.++++|
T Consensus 261 ~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sg 335 (393)
T 4gq1_A 261 RWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----RYMDYFATAH 335 (393)
T ss_dssp EEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----SCTTEEEEEE
T ss_pred eeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----CCCCEEEEEE
Confidence 987 7999999887 6999999999876532100 001111122223334443 1345677788
Q ss_pred ecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCC
Q 006808 271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG 350 (630)
Q Consensus 271 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~ 350 (630)
+.||.|+|||..++..+. ....|..
T Consensus 336 s~Dg~V~lwd~~~~~~~~-------------------------------------------------------~~~~~~~ 360 (393)
T 4gq1_A 336 SQHGLIQLINTYEKDSNS-------------------------------------------------------IPIQLGM 360 (393)
T ss_dssp TTTTEEEEEETTCTTCCE-------------------------------------------------------EEEECSS
T ss_pred CCCCEEEEEECCCCcEEE-------------------------------------------------------EecCCCC
Confidence 889999999987664321 1125666
Q ss_pred CcEEEeecCCcceeeccccceecccccee
Q 006808 351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
.|.+++|||||++| ++++.++. .+|.+
T Consensus 361 ~V~svafspdG~~L-A~as~~Gv-~lvrL 387 (393)
T 4gq1_A 361 PIVDFCWHQDGSHL-AIATEGSV-LLTRL 387 (393)
T ss_dssp CEEEEEECTTSSEE-EEEESSEE-EEEEE
T ss_pred cEEEEEEcCCCCEE-EEEeCCCe-EEEEE
Confidence 89999999999999 88987665 34433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=240.76 Aligned_cols=238 Identities=14% Similarity=0.263 Sum_probs=188.4
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++| ++++|++|+.||+|++||+.+++.+..+.+|.. .+.++.|.
T Consensus 173 ~~~v--~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~------------------~v~~l~~~-------- 222 (435)
T 1p22_A 173 TGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE------------------AVLHLRFN-------- 222 (435)
T ss_dssp SSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCS------------------CEEEEECC--------
T ss_pred CCcE--EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC------------------cEEEEEEc--------
Confidence 4567 54466 889999999999999999999999988875544 34455553
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeE--EccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..+++|+.+|.|++||+.++.... ....+|...|.+++| +++++++|+.||.|++||+.+++++..+.+|..
T Consensus 223 ---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (435)
T 1p22_A 223 ---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 297 (435)
T ss_dssp ---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence 4579999999999999999876542 445689999999999 678999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc--
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-- 236 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~-- 236 (630)
.|.++.|+ +.++++|+ |.|++||+++++++..+.+|...|.+++| ++.+|++++ .||.|++||+.++....
T Consensus 298 ~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~~ 372 (435)
T 1p22_A 298 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPRAP 372 (435)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTTSC
T ss_pred cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCcccc
Confidence 99999994 57888887 89999999999999999999999999999 688888888 69999999987654210
Q ss_pred --ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 237 --ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
..+...+..+...+..+.+ ++.+|++++.||.|++||+.+....
T Consensus 373 ~~~~~~~~~~~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 373 AGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp TTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC-------
T ss_pred ccchheeeccCCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 0123333333334444444 4688999999999999999776543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=241.63 Aligned_cols=257 Identities=11% Similarity=0.115 Sum_probs=186.5
Q ss_pred cccceeEeEECCCC--CEEEEeeCCCcEEEEECCCCcEEEEec---cccc------cccccccc--------------cc
Q 006808 4 SNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFA---DIAS------TETTSLYG--------------NR 58 (630)
Q Consensus 4 ~~V~~~~~~fs~dg--~~las~s~dg~i~vwd~~~~~~~~~~~---~~~~------~~~~~~~s--------------~~ 58 (630)
++| .+++|+|++ .+|++|+.||+|++||+.++....... .+.+ .+....+. ..
T Consensus 94 ~~V--~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 94 EKI--NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp CCC--CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred Cce--EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 678 555999998 899999999999999998755432110 0000 00000000 00
Q ss_pred ccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe-eeEE------ccCCCCCCEEEEEEecCC-C
Q 006808 59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWR------LSDCHPGGVSAISFATHG-S 130 (630)
Q Consensus 59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~-~~~~------~~~~h~~~v~~~~~s~~g-~ 130 (630)
+..+| ...+.+++|.+. +.+|++| .||.|++||+.++. .... ...+|...|.+++|+|++ .
T Consensus 172 ~~~~h-~~~v~~~~~~~~---------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 172 FANAH-TYHINSISINSD---------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp ECSCC-SSCCCEEEECTT---------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred eccCC-CcceEEEEEcCC---------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 01133 346778888874 6778888 79999999999543 3322 245799999999999998 9
Q ss_pred EEEEEeCCCcEEEEeCCCCce----eEEeecCCC------------CeEEEEEccCCCEEEEeC-CeEEEEECCC-Ccee
Q 006808 131 CIYSAGADGMVCEIDPLTGSL----LGKFRASTK------------GISCMAVSSDGKMLATAA-GQLKTFNCSD-HKKM 192 (630)
Q Consensus 131 ~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~------------~v~~l~~~p~~~~l~~~~-g~i~lwd~~~-~~~~ 192 (630)
+|++|+.||.|++||+++++. +..+..|.. .|.+++|+|+|++|++++ +.|++||+++ ++++
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc
Confidence 999999999999999999887 788888876 899999999999999988 9999999997 8888
Q ss_pred eEeecCCCC---------------eEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceee-----------------
Q 006808 193 QKFSGHPGA---------------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV----------------- 240 (630)
Q Consensus 193 ~~~~~h~~~---------------v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~----------------- 240 (630)
..+.+|... +..++|+|++++|++++ .|+.|++||+.+++.......
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA 399 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence 889888642 33489999999998887 699999999988764210000
Q ss_pred -----------eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 241 -----------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
....... .+..+.|+ |++.+|++++.++ +++|..
T Consensus 400 ~~~~~~~~~~~~~~~~~~-~i~~~~~~-----p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 400 SGKRKKDEISVDSLDFNK-KILHTAWH-----PKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp SSCCCTTCEEGGGCCTTS-CCCEEEEC-----SSSSEEEEECSSC-EEEEEC
T ss_pred cCCcccccccccccccCC-ceeEEEEC-----CCCCEEEEEecce-eeeecc
Confidence 0001111 23345565 9999999988865 788864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=260.21 Aligned_cols=246 Identities=13% Similarity=0.138 Sum_probs=197.5
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCC--eeeEEccCCCCCCEEEEEEecC--CCEEEEEeCCCcEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVC 142 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~--~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg~v~ 142 (630)
.+++++|.+. +.+|++|+.+|.|++||+..+ .....+ .+|.++|++++|+|+ +++|++|+.||.|+
T Consensus 11 ~V~~l~~s~d---------g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYY---------GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSS---------SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCC---------CCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4556666554 678999999999999999843 444344 589999999999987 99999999999999
Q ss_pred EEeCCCCc--eeEEeecCCCCeEEEEEccC--CCEEEEeC--CeEEEEECCCCc--eeeEeecCCCCeEEEEEee-----
Q 006808 143 EIDPLTGS--LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD----- 209 (630)
Q Consensus 143 iwd~~~~~--~~~~~~~~~~~v~~l~~~p~--~~~l~~~~--g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp----- 209 (630)
+||+.+++ .+..+..|...|.+++|+|+ +.++++++ |.|++||+.++. ....+.+|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999887 67778889999999999999 99999988 899999998873 3456678999999999999
Q ss_pred --------CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCC---CCEEEEEecCCcEEE
Q 006808 210 --------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYI 278 (630)
Q Consensus 210 --------~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~dg~i~i 278 (630)
++.++++++ .||.|++||++++... ......+..+...+.++.|+ |+ +.+|++++.||.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~s-----p~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEE-TTSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEE-CCCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEec-----cCCCCCCEEEEEecCCEEEE
Confidence 588888888 6999999999876532 12333444445556677776 88 899999999999999
Q ss_pred EEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeec
Q 006808 279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358 (630)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s 358 (630)
||+.++....... +.....|...|.+++|+
T Consensus 234 wd~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~v~~l~~s 263 (753)
T 3jro_A 234 WTQDNEQGPWKKT--------------------------------------------------LLKEEKFPDVLWRASWS 263 (753)
T ss_dssp EEESSSSSCCBCC--------------------------------------------------BSSSSCCSSCCCCEEEC
T ss_pred ecCCCCCCcceeE--------------------------------------------------EeccCCCCCceEEEEEc
Confidence 9987653210000 00011466789999999
Q ss_pred CCcceeeccccceeccccceec
Q 006808 359 QDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 359 ~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
|+|.++ ++++.|+.+++|++.
T Consensus 264 pdg~~l-~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 264 LSGNVL-ALSGGDNKVTLWKEN 284 (753)
T ss_dssp TTTCCE-EEECSSSCEECCBCC
T ss_pred CCCCEE-EEEcCCCEEEEEecC
Confidence 999999 999999999999986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-25 Score=229.61 Aligned_cols=266 Identities=12% Similarity=0.091 Sum_probs=206.5
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEEeCCC
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG 96 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g 96 (630)
.++++++.|+.|++||+.+++++..+..+. .+.+++|.+. +..+ ++++.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-------------------~~~~~~~s~d---------g~~l~~~~~~d~ 54 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-------------------NPMGAVISPD---------GTKVYVANAHSN 54 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTT---------SSEEEEEEGGGT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-------------------CcceEEECCC---------CCEEEEECCCCC
Confidence 367888899999999999999888776432 2456666654 5544 6677899
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE-
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML- 174 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l- 174 (630)
.|++||+.+++.+..+.. ...+.+++|+|+|++++. ++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+
T Consensus 55 ~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred eEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 999999999998876643 348999999999998754 556799999999999998888754 568999999999977
Q ss_pred EEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeee
Q 006808 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 252 (630)
++++ +.|++||+.+++.+..+..| ..+.+++|+|+++++++++..++.|++||+.+++.. ..+.+.. .+..
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~-~~~~ 204 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEA-APSG 204 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSS-EEEE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEecCC-Cccc
Confidence 5555 89999999999988888765 456999999999988666657899999999887633 2333333 3455
Q ss_pred EEecCCccCCCCCEEEEEe---cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCcee
Q 006808 253 RCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH 329 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 329 (630)
+.++ |++.+|++++ .++.|++||+.+++.+...
T Consensus 205 ~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--------------------------------------- 240 (391)
T 1l0q_A 205 IAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--------------------------------------- 240 (391)
T ss_dssp EEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEEE---------------------------------------
T ss_pred eEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeEEEEE---------------------------------------
Confidence 6666 9999999888 6899999998766432110
Q ss_pred EEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
..| ..+.+++|+|||++|.++++.|+.+++|++...
T Consensus 241 ----------------~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 241 ----------------PVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp ----------------ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ----------------ecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 011 135678999999877578888999999998653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=233.03 Aligned_cols=251 Identities=18% Similarity=0.195 Sum_probs=189.5
Q ss_pred CcccceeEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++| .+++|+| ++.+|++|+.||.|++||+.+++....+.. ...+.++.|.+..++
T Consensus 99 ~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~-- 155 (408)
T 4a11_B 99 RYSV--ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-------------------EETVYSHHMSPVSTK-- 155 (408)
T ss_dssp SSCE--EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-------------------SSCEEEEEECSSCSS--
T ss_pred CCcE--EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-------------------CCceeeeEeecCCCC--
Confidence 4578 5669999 778999999999999999999988776641 224556777766544
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCc-eeEEe----
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS-LLGKF---- 155 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~-~~~~~---- 155 (630)
+.++++++.+|.|++||+.+++.+..+ .+|...|.+++|+|++. .|++++.||.|++||++++. ++..+
T Consensus 156 ----~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 156 ----HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp ----CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred ----CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 678999999999999999999887665 47999999999999998 58899999999999998765 44444
Q ss_pred -----------ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCC-----CCeEEEEEeeCCcEEEEE
Q 006808 156 -----------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 156 -----------~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l~~~ 217 (630)
..|...|.+++|+|++.+|++++ |.|++||+.+++....+.++. ..+........+..++++
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV 310 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE
Confidence 56788999999999999999987 899999999987665543321 112222222334455666
Q ss_pred eeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
+ .++.|++||+.+++. +..+..+...+..+.|+ |++.+|++++.||.|++|++.+++.+.....
T Consensus 311 ~-~~~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 311 P-YGSTIAVYTVYSGEQ-----ITMLKGHYKTVDCCVFQ-----SNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp E-ETTEEEEEETTTCCE-----EEEECCCSSCEEEEEEE-----TTTTEEEEEETTSCEEEEEECC---------
T ss_pred e-cCCEEEEEECcCCcc-----eeeeccCCCeEEEEEEc-----CCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 6 599999999998763 33444444556667776 9999999999999999999999887765443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=228.15 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=178.6
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++|+.+ .|+|+ +++|+.|++|++|+......+..+.. ..... ....+| ...+.++.|.+...
T Consensus 77 ~~v~~~--~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~--~~~~~-----~~~~~~-~~~v~~~~~~~~~~----- 138 (343)
T 3lrv_A 77 PNPRTG--GEHPA---IISRGPCNRLLLLYPGNQITILDSKT--NKVLR-----EIEVDS-ANEIIYMYGHNEVN----- 138 (343)
T ss_dssp ECCCTT--CCCCS---EEEECSTTEEEEEETTTEEEEEETTT--CCEEE-----EEECCC-SSCEEEEECCC--------
T ss_pred CCceee--eeCCc---eEEecCCCeEEEEEccCceEEeecCC--cceeE-----EeecCC-CCCEEEEEcCCCCC-----
Confidence 456444 88888 99999999999998764222211110 00000 000022 23577777776210
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCcee-EEeec-CCCC
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRA-STKG 161 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~-~~~~~-~~~~ 161 (630)
+.++++|+.||.|++||+.+++........|...|.+++|+|+|.+|++|+.||.|++||+++++.+ ..+.. |..+
T Consensus 139 --~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 139 --TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred --CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 7789999999999999999998865554556778999999999999999999999999999999988 78888 9999
Q ss_pred eEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeec---CCCCeE--EEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---HPGAVR--FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~---h~~~v~--~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|.+++|+|++.+|++++ +.|++||+++++.+..+.. |...+. +++|+|+|++|++++..|+.|++|++......
T Consensus 217 v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred EEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 99999999999999998 8999999999877655443 444444 69999999999998744999999999765432
Q ss_pred cceeeeeecCCceeeeeEEecCCccCC---CCCEEEEEecCCcEEEEE
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDD---AGLYVLAISETGVCYIWY 280 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~dg~i~iwd 280 (630)
. .. .......|. + +...+++++.||.+.++-
T Consensus 297 ---~--~~----~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 297 ---W--TK----DEESALCLQ-----SDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ---E--EE----EEEEECCC---------CCCCEEEEEEETTEEEEEE
T ss_pred ---e--Ee----cCceeEecC-----ccccccceeEEEecCCceEEEE
Confidence 1 11 223344444 5 778999999999998875
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=229.21 Aligned_cols=250 Identities=10% Similarity=0.015 Sum_probs=192.8
Q ss_pred cceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMV 141 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v 141 (630)
..+++++|.+. +.+|++++.+|.|++|++.++. ..... .+|...|.+++|+|+++ +|++++.||.|
T Consensus 12 ~~v~~~~~s~~---------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 12 DYISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp SCEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CcEEEEEEcCC---------CCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 35778888774 6789999999999999998877 22233 37999999999999999 99999999999
Q ss_pred EEEeC-CCCceeEEeec--CCCCeEEEEEccCCCEEEEeC--CeEEEEECCC---------CceeeEeecCCCCeEEEEE
Q 006808 142 CEIDP-LTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTF 207 (630)
Q Consensus 142 ~iwd~-~~~~~~~~~~~--~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~---------~~~~~~~~~h~~~v~~l~~ 207 (630)
++||+ .+++. ..+.. |...|.+++|+| +.++++++ +.|++||+++ ++++..+. |...|.+++|
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 99999 77755 67788 999999999999 88999887 8999999988 77777776 8899999999
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCC-CccccceeeeeecCCceeeeeEEecCCccCC-CCCEEEEEecCCcEEEEEcCCc-
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI- 284 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~- 284 (630)
+|++ +++++ .|+.|++||+.. .... ...... .....+.++.++ | ++.++++++.||.|++|++...
T Consensus 159 ~~~~--l~~~~-~d~~i~i~d~~~~~~~~--~~~~~~-~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 159 NSSR--LIVGM-NNSQVQWFRLPLCEDDN--GTIEES-GLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp CSSE--EEEEE-STTEEEEEESSCCTTCC--CEEEEC-SCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTC
T ss_pred cCCc--EEEEe-CCCeEEEEECCcccccc--ceeeec-CCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCC
Confidence 9987 77776 699999999988 5432 112222 333345666676 8 9999999999999999998765
Q ss_pred -ccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcce
Q 006808 285 -EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL 363 (630)
Q Consensus 285 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (630)
...... . ..... ... .. .-..|...|.+++|+|+|.+
T Consensus 228 ~~~~~~~--~-~~~~~------~~~-----~~----------------------------~~~~~~~~i~~~~~s~~~~~ 265 (342)
T 1yfq_A 228 DDYNSSK--R-FAFRC------HRL-----NL----------------------------KDTNLAYPVNSIEFSPRHKF 265 (342)
T ss_dssp CSTTCTT--C-EEEEC------CCC-----CT----------------------------TCCSSCCCEEEEEECTTTCC
T ss_pred ccccccc--c-eeeec------ccc-----cc----------------------------cccccceeEEEEEEcCCCCE
Confidence 110000 0 00000 000 00 00146678999999999999
Q ss_pred eeccccceeccccceeccc
Q 006808 364 LPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 364 l~~s~s~d~~~~~w~~~~~ 382 (630)
| ++++.|+.+++|++.+.
T Consensus 266 l-~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 266 L-YTAGSDGIISCWNLQTR 283 (342)
T ss_dssp E-EEEETTSCEEEEETTTT
T ss_pred E-EEecCCceEEEEcCccH
Confidence 9 99999999999998654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=239.97 Aligned_cols=249 Identities=14% Similarity=0.173 Sum_probs=188.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
...| .+++|||+|++||+++.||.|+|||..+ ++..+. |...+. ...+.+++|+|.
T Consensus 85 ~~~V--~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------------~~sv~svafSPD------ 140 (588)
T 2j04_A 85 VCYP--RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------------SRTYHCFEWNPI------ 140 (588)
T ss_dssp SCCE--EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST-------------TTCEEEEEECSS------
T ss_pred CCcE--EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc-------------cccEEEEEEcCC------
Confidence 3567 6779999999999999999999999644 555554 332211 224667777665
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee-------eEEc---cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL-------KWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL- 151 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~-------~~~~---~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~- 151 (630)
+++|++|+.||+|++||+.++.. +..+ ..+|...|.+++|+|+| +++++.|++|++||+..+..
T Consensus 141 ---G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 141 ---ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ---SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred ---CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence 88899999999999999998853 3343 25788999999999999 88889999999999988774
Q ss_pred --eEEee-cCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEE--eeCCcEEEEEeeCCCeEE
Q 006808 152 --LGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTF--SDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 152 --~~~~~-~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~--sp~~~~l~~~~~~d~~i~ 225 (630)
.+++. +|...|.+++|+ |..||+++ ++|++||+.+++......+|...|..++| +|++..+++++ .+|+ +
T Consensus 216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~-k 291 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSY-K 291 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEE-E
T ss_pred cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCC-E
Confidence 35664 677899999999 58888888 99999999988764444489999999999 99998888877 6999 9
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
+|.... ..++ |++..+++. |+++++|+.... .+..... ...+.+ ..++|
T Consensus 292 lw~~d~---------------------~~~s-----pd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~-va~SP 340 (588)
T 2j04_A 292 VLLEDE---------------------LHVT-----ADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHG-ISLSP 340 (588)
T ss_dssp EEESSS---------------------EEEE-----CCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEE-EEECT
T ss_pred EEeecc---------------------EEEC-----CCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEE-EEECC
Confidence 998761 2244 888777664 899999987433 3443333 221111 22788
Q ss_pred cccchhhhhhhccc
Q 006808 306 SQKSATAAIFAAKL 319 (630)
Q Consensus 306 ~~~~~~~~i~~~~~ 319 (630)
+++ .+++++.
T Consensus 341 dG~----~lA~~~~ 350 (588)
T 2j04_A 341 DGY----SIAIVYD 350 (588)
T ss_dssp TSS----EEEEEEE
T ss_pred CCC----EEEEEEe
Confidence 887 5665554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-25 Score=232.45 Aligned_cols=242 Identities=11% Similarity=0.054 Sum_probs=188.0
Q ss_pred ccceeEeEECCCCCEE-EEeeCCCcEEEEECC--CCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 5 NIRDILTSFSPALDYF-AICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~l-as~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
+| .+++|+|+|++| |+|+.||.|+|||+. ++..+..+..+. ....+++++|.+.
T Consensus 104 ~v--~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------~~~~v~~~~~sp~----- 160 (450)
T 2vdu_B 104 YI--RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC----------------FSKRPNAISIAED----- 160 (450)
T ss_dssp CE--EEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE----------------CSSCEEEEEECTT-----
T ss_pred ce--EEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc----------------CCCCceEEEEcCC-----
Confidence 57 566999999996 899999999999999 888887765211 1234667777664
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeE---EccCCCCCCEEEEEEecC---CCEEEEEeCCCcEEEEeCCCCceeEE-
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGK- 154 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~---~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (630)
+.+|++|+.+|.|++|++.++.... ....+|...|++++|+|+ +++|++++.|+.|++||+.+++++..
T Consensus 161 ----~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 ----DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp ----SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred ----CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence 7789999999999999998876532 233579999999999999 99999999999999999999998887
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------------------------CCCeEEEEE
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------------------PGAVRFMTF 207 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------------------~~~v~~l~~ 207 (630)
+.+|...|.+++|+ ++.+|++++ +.|++||+.+++++..+..+ ...|.+++|
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 55899999999999 999999998 89999999999988877632 356899999
Q ss_pred eeCCcEEEEEeeCCCeEEEEEc--CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec------CCcEEEE
Q 006808 208 SDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIW 279 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~------dg~i~iw 279 (630)
+|+++++++++..++.|++|++ ..+... .....+..+. .+..+.|. |++.++++++. +..|.+|
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l--~~~~~~~~~~-~v~~~~~~-----~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDL--ALKQIITFPY-NVISLSAH-----NDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCE--EEEEEEECSS-CEEEEEEE-----TTEEEEEECCTTCCSSCCCSEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCce--eeccEeccCC-ceEEEEec-----CCcEEEEEecccCCCCCCcceEEE
Confidence 9999999998756999999999 443211 1233333333 34555565 75443433343 4558888
Q ss_pred EcC
Q 006808 280 YGQ 282 (630)
Q Consensus 280 d~~ 282 (630)
.+.
T Consensus 388 ~~~ 390 (450)
T 2vdu_B 388 EYN 390 (450)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=211.13 Aligned_cols=248 Identities=14% Similarity=0.090 Sum_probs=176.8
Q ss_pred EEEEeeCCCcEEEEECCCC---cEEEEeccccccccccccccccc------cccc-ccceeeEEecccccccccc-----
Q 006808 19 YFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLE------REHL-SVDYTCMKWLSVDRKKKRK----- 83 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~s~~~~------~~~~-~~~~~~~~w~~~~~~~~~~----- 83 (630)
-+++++ ...|++|+..++ +.++++..+..++..+.+.|+.. -|++ ...+..+++.|.+...+..
T Consensus 56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence 345555 469999999998 88999999999999998888411 1222 1245555665552211000
Q ss_pred -------cCCcEEEEEe---CCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEec---CCCEEEEEeCCCcEEEEeCCCC
Q 006808 84 -------LGSSLLVLGT---GGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 84 -------~~~~~l~~~~---~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~---~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
.....++..+ .++.|++|++.. ++.+... .+|...++.++|++ ++..|++++.|++|++||+.+|
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG 213 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG 213 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence 0122233333 378899999844 6665444 36888888999988 7789999999999999999999
Q ss_pred ceeEEeecCCC---CeEEEEEccCCCEEE------------EeC--CeEEEEECCCCceeeEe-----ecCCCCeEEEEE
Q 006808 150 SLLGKFRASTK---GISCMAVSSDGKMLA------------TAA--GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTF 207 (630)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~~p~~~~l~------------~~~--g~i~lwd~~~~~~~~~~-----~~h~~~v~~l~~ 207 (630)
++++++.+|.. .+.+++|+|+|.+++ +|+ ++|++||..+++.+..+ .+|...+.+..+
T Consensus 214 k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 214 QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 99999987543 677889999999874 344 69999999999887665 367666544444
Q ss_pred eeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 208 sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+ +.++++++ .|++|+|||+.+++. +..+. |....+.++.|+ |+|++|++|+.|++|+|||+
T Consensus 294 s--g~~lASgS-~DgTIkIWDl~tGk~-----l~tL~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 K--DHCAAAIL-TSGTIAIWDLLLGQC-----TALLPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp E--TTEEEEEE-TTSCEEEEETTTCSE-----EEEECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred C--CCEEEEEc-CCCcEEEEECCCCcE-----EEEecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence 4 77777776 799999999999873 33443 444555567787 99999999999999999985
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=231.98 Aligned_cols=244 Identities=10% Similarity=0.013 Sum_probs=159.7
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.+++++.+||+|+.|++|+|||+.++......... ...||.. .+.+++|.|..... ....+.+|++
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~------------~~~gH~~-~v~~v~~~p~~~~~-~~~d~~~las 161 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLG------------GKSGHHN-FVNDIDIADVYSAD-NRLAEQVIAS 161 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEEC------------TTTSCSS-CEEEEEEEEEECTT-CSEEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeec------------ccCCCCC-ceEEEEEccccccc-cCCCCCEEEE
Confidence 45567789999999999999999988654321100 0114432 45566665521100 0001678999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEe---------------
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF--------------- 155 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~--------------- 155 (630)
|+.|++|+|||+.++..+..+. +|..+|.+++|+|++. +|++++.|++|++||+.+++.....
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp EETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred EECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 9999999999999888776665 6889999999999875 7999999999999999887643322
Q ss_pred ----------ecCCCCeEEEEEc-cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEee-------------
Q 006808 156 ----------RASTKGISCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD------------- 209 (630)
Q Consensus 156 ----------~~~~~~v~~l~~~-p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp------------- 209 (630)
.+|...+.++.|. |++..+++++ +++++||+..++....+..|...+..+.+.|
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC
T ss_pred cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee
Confidence 2466678899986 7999999998 8999999988877666665554444433332
Q ss_pred ------CCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 210 ------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 210 ------~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.+..++++++.|+.|++||+.++... .....+.. .+..++|+ |+|++||+++.+| +.+|.+
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~----~~~~~~~~-~V~svafs-----pdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSN----SIPIQLGM-PIVDFCWH-----QDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCC----EEEEECSS-CEEEEEEC-----TTSSEEEEEESSE-EEEEEE
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEE----EEecCCCC-cEEEEEEc-----CCCCEEEEEeCCC-eEEEEE
Confidence 34455555557999999999987644 22233444 45667777 9999999998766 556654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-25 Score=223.06 Aligned_cols=260 Identities=11% Similarity=0.048 Sum_probs=185.3
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
.+++++|.+.... +.+|++|+.+|.|++||+.+ +..+.....+|...|++++|+|++++|++++.||.|++||
T Consensus 41 ~v~~~~~~~~~~~------g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 41 SIGCLSFSPPTLP------GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp CEEEEEECCTTSS------SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEEEcCCCCC------ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 4566777665321 47899999999999999998 5555455568999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEE--ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 146 PLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~--~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
+.+++.+. +..|...|.+++| +|++.+|++++ |.|++||+++++.+..+..|. .+.++.+.+ ..+++++ .+
T Consensus 115 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~ 189 (368)
T 3mmy_A 115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVAT-AE 189 (368)
T ss_dssp TTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEE-GG
T ss_pred cCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEe-CC
Confidence 99998776 4558999999999 89999999987 899999999999988888664 566666664 4667766 59
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccC
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (630)
+.+++|++...............+....+...... . .....+++++.||.|++|++.......... ....
T Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~----~~~~-- 259 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK--Q--NKPTGFALGSIEGRVAIHYINPPNPAKDNF----TFKC-- 259 (368)
T ss_dssp GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT--T--SCEEEEEEEETTSEEEEEESSCSCHHHHSE----EEEC--
T ss_pred CcEEEEEeccccchhhhccccccCCCceEEEcccC--C--CCCCeEEEecCCCcEEEEecCCCCccccce----eeee--
Confidence 99999999876533111111111222222222111 0 012339999999999999997663211000 0000
Q ss_pred CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
. .. .........|...|.+++|+|+|.+| ++++.|+.+++|++.+
T Consensus 260 ----~------------~~------------------~~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 260 ----H------------RS------------------NGTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA 304 (368)
T ss_dssp ----S------------EE------------------C----CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred ----e------------ec------------------ccccccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence 0 00 00000112566689999999999999 9999999999999875
Q ss_pred c
Q 006808 382 R 382 (630)
Q Consensus 382 ~ 382 (630)
.
T Consensus 305 ~ 305 (368)
T 3mmy_A 305 R 305 (368)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=214.11 Aligned_cols=210 Identities=11% Similarity=0.065 Sum_probs=159.6
Q ss_pred cccceeEeEECCC----CCEEEEeeCCCcEEEEECCCCcEEEE-eccccccccccccccccccccc-------ccceeeE
Q 006808 4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHL-------SVDYTCM 71 (630)
Q Consensus 4 ~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~ 71 (630)
..|+.+ +|+|| ++++++++. .++||++.+++.+.. ..+|...+....++++ |.. +..++++
T Consensus 112 ~~v~sl--a~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d---G~~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 112 REIRAL--FCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED---GGGKENQFLMPPEETIL 184 (356)
T ss_dssp EEEEEE--CC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTT---SCEEEEEEECCCSSCEE
T ss_pred cceEEE--EECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCC---CceeeeeccCCCceeeE
Confidence 467555 99999 999999884 478899888888777 5678888887777775 211 3355667
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCC--CCCEEEEEEecCCCEE------------EEEeC
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCI------------YSAGA 137 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h--~~~v~~~~~s~~g~~l------------~s~~~ 137 (630)
+|.+.+.. +.+|++|+.|++|+|||+.+++++.++..+| ...+.+++|+|+|.++ ++|+.
T Consensus 185 ~fs~~~g~------~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 185 TFAEVQGM------QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp EEEEEETS------TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred EeeccCCC------CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 77764433 7899999999999999999999987775333 3468888999999876 56788
Q ss_pred CCcEEEEeCCCCceeEEe-----ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeE-EEEEee
Q 006808 138 DGMVCEIDPLTGSLLGKF-----RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR-FMTFSD 209 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~-~l~~sp 209 (630)
|++|++||..+++.+..+ .+|...+.+..+ ++.++++++ ++|+|||+.+++++.++.+|...+. .++|+|
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred CcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence 999999999999988765 245555444444 377888887 8999999999999999999987655 689999
Q ss_pred CCcEEEEEeeCCCeEEEEEc
Q 006808 210 NGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 210 ~~~~l~~~~~~d~~i~vwd~ 229 (630)
+|++|++++ .|++|+|||+
T Consensus 337 DG~~LaSGS-~D~TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQ-KDGNIFVYHY 355 (356)
T ss_dssp SSSEEEEEC-TTSCEEEEEE
T ss_pred CCCEEEEEE-CCCcEEEecC
Confidence 999999987 7999999996
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=229.62 Aligned_cols=324 Identities=7% Similarity=-0.019 Sum_probs=226.8
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+|+|++.++++++.|++|.+||..+++++.++..... +..+.|+|+ ++++++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd---------------------------g~~l~v 195 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS---------------------------GRYLLV 195 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT---------------------------SCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC---------------------------CCEEEE
Confidence 6899999999999999999999999999988863221 333333333 888999
Q ss_pred EeCCCeEEEEEc--cCCeeeEEccCCCCCCEEEEEEec----CCCEEEEEe-CCCcEEEEeCCCCceeEEeecC------
Q 006808 92 GTGGGDVLALAV--SAGQLKWRLSDCHPGGVSAISFAT----HGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------ 158 (630)
Q Consensus 92 ~~~~g~v~iwd~--~~~~~~~~~~~~h~~~v~~~~~s~----~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------ 158 (630)
++.++.|.+||+ .+++.+.++. +...+..++|+| +|+++++++ .+++|.+||..+++++..+..+
T Consensus 196 ~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 196 IGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred ECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 999999999999 8888876664 456789999999 999999888 4899999999999999888752
Q ss_pred -----CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 159 -----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 159 -----~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
...+.++.++|++..++++. +.|.+||+.+.+.+. .+. +...+..+.|+|+|++|++++..+++|.+||
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 22788999999877665553 899999998876544 343 5667889999999999888876789999999
Q ss_pred cCCCccccceeeeee---cCCceeeeeEEecCCccCCC-CCEEEEEe-cCCcEEEEEcCC-------cccccccCceeEE
Q 006808 229 TDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDA-GLYVLAIS-ETGVCYIWYGQN-------IEELRNTKATKIL 296 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~ 296 (630)
+.+++.. ..... .|+..... ++. |+ +..++++. .|++|.+||..+ ++.++..+.....
T Consensus 353 ~~tg~l~---~~i~~g~~ph~g~g~~--~~~-----p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 353 SKDRRLS---ALVDVGKTPHPGRGAN--FVH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG 422 (543)
T ss_dssp TTTTEEE---EEEECSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred CCCCeEE---EeeccCCCCCCCCCcc--cCC-----CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence 9998744 22222 24332222 233 66 55566665 579999999988 5555544332111
Q ss_pred eeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEE--------eccCCCcEEEeecCCcceeeccc
Q 006808 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI--------LVNSGEDINLNCSQDGVLLPMSQ 368 (630)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~--------~~h~~~v~~~~~s~dg~~l~~s~ 368 (630)
.....++|+++ .+++++.-+--.-.+..+.+.+-......++.+ ..|...+..+.|+|||+.|.++.
T Consensus 423 -~~~v~~~pdg~----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 497 (543)
T 1nir_A 423 -SLFIKTHPKSS----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV 497 (543)
T ss_dssp -CCCEECCTTCC----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred -ceEEEcCCCCC----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence 01122678877 777765211000001222332222112222333 34567899999999999985542
Q ss_pred ----cceeccccceecc
Q 006808 369 ----SLLKSKRGRYVQN 381 (630)
Q Consensus 369 ----s~d~~~~~w~~~~ 381 (630)
+.|+.|.+|+.+.
T Consensus 498 ~~~~~~~~~i~v~D~~t 514 (543)
T 1nir_A 498 WNGKNDSSALVVVDDKT 514 (543)
T ss_dssp ECCTTSCCEEEEEETTT
T ss_pred ecCCCCCCeEEEEECCC
Confidence 3579999999764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=216.27 Aligned_cols=239 Identities=10% Similarity=0.060 Sum_probs=188.7
Q ss_pred eEeEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.+++|+|+|+++ ++++.|++|++||+.+++.+..+..+. .+.+++|.+. +.
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------~v~~~~~spd---------g~ 86 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------------------SPQGVAVSPD---------GK 86 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTT---------SS
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------------------CccceEECCC---------CC
Confidence 566999999977 667789999999999999888775322 4556677664 55
Q ss_pred EEE-EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 88 LLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 88 ~l~-~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
.|+ ++..++.|++||+.+++.+..+. +...+.+++|+|+|+.+ ++++.++.|++||+.+++.+..+..+ ..+.++
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI 163 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence 554 45567999999999998876653 44578999999999987 67888999999999999998888865 457999
Q ss_pred EEccCCCEEE-EeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceee
Q 006808 166 AVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 166 ~~~p~~~~l~-~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~ 240 (630)
+|+|++++++ +++ +.|++||+.+++.+..+. +...+.+++|+|+++++++++. .++.|++||+.+++..
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~----- 237 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT----- 237 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----
Confidence 9999998874 444 799999999998877776 5567899999999999998875 5899999999887633
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEE-EEEecCCcEEEEEcCCccccccc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..+..... +..+.++ |++++| ++++.|+.|++||+.+++.+...
T Consensus 238 ~~~~~~~~-~~~~~~s-----~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 238 ARIPVGPD-PAGIAVT-----PDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEecCCC-ccEEEEc-----cCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 22222222 3455665 899887 56678999999999988766544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=217.26 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=174.9
Q ss_pred EeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|.+++++++ +|+.|++|+|||+.+++.+..+.. .. .+.++.|.+ ..
T Consensus 63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-~~------------------~v~~v~~~~-----------~~ 112 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-DA------------------PVKDLFLSR-----------EF 112 (355)
T ss_dssp EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC-SS------------------CEEEEEECS-----------SE
T ss_pred EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC-CC------------------ceEEEEEcC-----------CE
Confidence 348888888875 677789999999999998887752 11 344555543 22
Q ss_pred EEEEeCCCeEEEEEccCC-eeeEEccCCCCCCEEEEEEecCCCEEEE--EeCCCcEEEEeCCCCc---------------
Q 006808 89 LVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYS--AGADGMVCEIDPLTGS--------------- 150 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s--~~~dg~v~iwd~~~~~--------------- 150 (630)
++++ .++.|++||+.++ +.+..+.. +...+++++ .+++. |+.||.|++||+.+++
T Consensus 113 ~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 113 IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL 185 (355)
T ss_dssp EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------
T ss_pred EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccC
Confidence 3443 5789999999988 55433321 455566777 56665 5789999999999865
Q ss_pred -eeEEeecCCCCeEEEEEccCCCEEEEeC--Ce-EEEEECCCCceeeEee-c-CCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 151 -LLGKFRASTKGISCMAVSSDGKMLATAA--GQ-LKTFNCSDHKKMQKFS-G-HPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 151 -~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~-i~lwd~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
++..+.+|...|.+++|+|+|++|++++ ++ |++||+.+++++.++. + |...|.+++|+|++++|++++ .|++|
T Consensus 186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v 264 (355)
T 3vu4_A 186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTL 264 (355)
T ss_dssp -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEE
T ss_pred cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEE
Confidence 2678999999999999999999999998 87 9999999999999998 6 999999999999999999988 69999
Q ss_pred EEEEcCCCcccccee-----------------eeeecC-CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 225 ALWRTDGVKKQSASC-----------------VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 225 ~vwd~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
++||+.......... .+.+.. .......++|+ +++.+|++++.||.+++|++..+..
T Consensus 265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-----SESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-----SSSEEEEEETTTTEEEEEEEEEETT
T ss_pred EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-----CCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 999997754221000 000110 01111345565 8999999999999999999866543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-23 Score=215.23 Aligned_cols=305 Identities=8% Similarity=-0.043 Sum_probs=212.1
Q ss_pred EECCCCC-EEEEee----CCC----cEEEEEC--CCCcEE--EEecccccccccccccccc-----cccccccceeeEEe
Q 006808 12 SFSPALD-YFAICS----GDA----RIKIWDT--LKGQVQ--TEFADIASTETTSLYGNRL-----EREHLSVDYTCMKW 73 (630)
Q Consensus 12 ~fs~dg~-~las~s----~dg----~i~vwd~--~~~~~~--~~~~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~w 73 (630)
+|++.|. ++++|+ .|| +|++||+ .+++++ ..+.++...+..+.+.+.- ..++..
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~-------- 140 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG-------- 140 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC--------
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC--------
Confidence 7888874 666876 467 8999999 999877 4477666555444333210 001000
Q ss_pred cccccccccccCCcEEEEEeCC------CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC---cEEEE
Q 006808 74 LSVDRKKKRKLGSSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEI 144 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~------g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~v~iw 144 (630)
++ +..++.++.+ +.|++||+..+.. ..+ .+|...|.+++|+|+|++|++++.++ .|++|
T Consensus 141 -~~---------~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 141 -AF---------RTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp -CT---------TCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred -cC---------CCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEE
Confidence 00 3345555443 6899999985543 233 36888999999999999999998875 99999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccCCCEEE-EeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLA-TAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~-~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
|+.++++. .+..+...+.+++|+|+|+.|+ +++ ..|++||+.+++. ..+..|...+.+++|+|+|++|++++.
T Consensus 209 d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 209 TLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred ECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC
Confidence 99998875 4666778999999999999888 444 3699999988875 567778889999999999999998874
Q ss_pred CCC--eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC---CcEEEEEcCCcccccccCc-e
Q 006808 220 GER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKA-T 293 (630)
Q Consensus 220 ~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~-~ 293 (630)
.++ .|++||+.+++.. .+......+....|+ |+|++|++++.+ +.|++||+.+++...-... .
T Consensus 287 ~~g~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 355 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGAPQ------RITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFL 355 (415)
T ss_dssp TTSSCEEEEEETTSSCCE------ECCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSS
T ss_pred CCCCcEEEEEECCCCCEE------EEecCCCcccCeEEC-----CCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCC
Confidence 345 6888898876532 122222344456666 999999988874 5899999988765321111 1
Q ss_pred eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcce
Q 006808 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL 363 (630)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~ 363 (630)
...+ .++|+++ .|++++.++. ...++... ........+..|.+.|.+++|+|--.+
T Consensus 356 ~~~~----~~spdg~----~l~~~s~~~~----~~~l~~~d--~~g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 356 DETP----SLAPNGT----MVIYSSSQGM----GSVLNLVS--TDGRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp CEEE----EECTTSS----EEEEEEEETT----EEEEEEEE--TTSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred cCCe----EEcCCCC----EEEEEEcCCC----ccEEEEEE--CCCCcEEEeeCCCCCCcCCcccccccc
Confidence 1222 2688887 7777776541 11233332 124456677889999999999996543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-23 Score=213.33 Aligned_cols=236 Identities=8% Similarity=0.051 Sum_probs=186.0
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++| .+++|+|+|.++++++.|+.|++||+.+++.+..+..+... +.+++|.+.
T Consensus 170 ~~v--~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~------------------~~~~~~~~~------- 222 (433)
T 3bws_A 170 GFV--ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW------------------SKILLYDPI------- 222 (433)
T ss_dssp CEE--EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS------------------EEEEEEETT-------
T ss_pred Cce--eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC------------------eeEEEEcCC-------
Confidence 356 45599999999999999999999999999988877644433 445566554
Q ss_pred cCCcEE-EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--------CCCcEEEEeCCCCceeEE
Q 006808 84 LGSSLL-VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--------ADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 84 ~~~~~l-~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--------~dg~v~iwd~~~~~~~~~ 154 (630)
+..+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+|+++++++ .|+.|++||+.+++.+..
T Consensus 223 --~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 223 --RDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp --TTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred --CCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 4555 455578999999999998876653 345699999999999999887 488999999999988776
Q ss_pred eecCCCCeEEEEEccCCCEEEEe-C--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC-----------
Q 006808 155 FRASTKGISCMAVSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG----------- 220 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~-~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~----------- 220 (630)
+. +...+.+++|+|+++.++++ + +.|++||+.+++.+..+. +...+.+++|+|+++++++++..
T Consensus 299 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 299 IG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp EE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred cc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 64 45578999999999766444 4 899999999998887776 67789999999999998887743
Q ss_pred ---CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCC
Q 006808 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN 283 (630)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~ 283 (630)
||.|++||+.+++.. ..+.... .+..+.|+ |+|.+|++++. |+.|++|++..
T Consensus 377 g~~dg~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 377 GLVLGKVYVIDTTTDTVK-----EFWEAGN-QPTGLDVS-----PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CSSCCEEEEEETTTTEEE-----EEEECSS-SEEEEEEC-----TTSCEEEEEETTTTEEEEEEETT
T ss_pred cccceEEEEEECCCCcEE-----EEecCCC-CCceEEEc-----CCCCEEEEEECCCCeEEEEEecC
Confidence 469999999887643 2222322 34556666 99999988875 99999999753
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-22 Score=225.60 Aligned_cols=342 Identities=9% Similarity=0.029 Sum_probs=216.9
Q ss_pred cccceeEeEECCCCCEEEEeeC-CC-----cEEEEECCCCcEEEEecccccccccccccccc--c--cccc--ccceeeE
Q 006808 4 SNIRDILTSFSPALDYFAICSG-DA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRL--E--REHL--SVDYTCM 71 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~--~--~~~~--~~~~~~~ 71 (630)
.+| .+++|||||++||+++. |+ .|++||+.+++....+..+........++... . ..+. ...+.++
T Consensus 37 ~~~--~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 37 PTL--MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCC--EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCC--CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456 45599999999999998 88 89999999998776665432210000000000 0 0000 0124566
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCC---eeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
.|.|. ++.|++++. +.|++||+.++ ... .+ ..|...+.+++|+|||++|+.++ ++.|++||+.+
T Consensus 115 ~~SpD---------g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 115 QWSPD---------AQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp EECTT---------SSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred EECCC---------CCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence 66664 677888776 99999999988 443 33 35778899999999999998887 46899999998
Q ss_pred CceeEEeecCCCC----------------eEEEEEccCCCEEEEeC--C-------------------------------
Q 006808 149 GSLLGKFRASTKG----------------ISCMAVSSDGKMLATAA--G------------------------------- 179 (630)
Q Consensus 149 ~~~~~~~~~~~~~----------------v~~l~~~p~~~~l~~~~--g------------------------------- 179 (630)
++.......+... +.+++|+|||++|++++ +
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 8776554443332 47899999999998875 3
Q ss_pred --eEEEEECCC-CceeeEee--cCCCCeEEEEEeeCCcEEEEEee----CCCeEEEEEcCCCccccceeeeeecCCce--
Q 006808 180 --QLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAV-- 248 (630)
Q Consensus 180 --~i~lwd~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~l~~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-- 248 (630)
.|++||+.+ ++...... .|...+..++| |||++|++++. .+..|++||+.+++.. .+........
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~ 337 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSPTWVP 337 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECSSCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCCCcCC
Confidence 789999988 77554432 47788999999 99999998763 2467999999987643 2222211111
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC-CcccccccCceeEEeeccCCCcccccchhhhhhhccc-cccccCC
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL-QDIVKPA 326 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~ 326 (630)
.+....|+ |||+++++++.+|.++||.+. .+. ..........+.....++++++ .|++.+. ++ ..
T Consensus 338 ~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~----~l~~~~~~~~---~~ 404 (741)
T 2ecf_A 338 LHNSLRFL-----DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG----LAYFRAGIES---AR 404 (741)
T ss_dssp CCSCCEEC-----TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT----EEEEEECSSC---TT
T ss_pred cCCceEEC-----CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC----EEEEEEeCCC---Cc
Confidence 22345565 999988999999988888764 232 3322222111111112577776 5544333 32 00
Q ss_pred ceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccce---eccccceec
Q 006808 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQ 380 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~~ 380 (630)
..+++..... ......+.. ...+.+++|||||++|+++.+.. ..+.+++..
T Consensus 405 ~~~l~~~~~~--g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 405 ESQIYAVPLQ--GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CBEEEEEETT--CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred eEEEEEEEcC--CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 1233443311 112233333 55678999999999885554432 445666553
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=196.22 Aligned_cols=287 Identities=9% Similarity=0.045 Sum_probs=193.2
Q ss_pred EECCCCCE-EEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~dg~~-las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
.|++++.+ +++++.++.|++||..+++....+..+...+ +++|.+. ++.++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~~~~s~d---------g~~l~ 55 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-------------------DTAITSD---------CSNVV 55 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-------------------EEEECSS---------SCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-------------------eEEEcCC---------CCEEE
Confidence 56776665 6677789999999999999887765332222 4444443 55555
Q ss_pred EEeC-CCeEEEEEccCCee-eEEccCCCCCCEEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 91 LGTG-GGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 91 ~~~~-~g~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....++
T Consensus 56 ~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 56 VTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI 133 (331)
T ss_dssp EEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred EEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence 5555 78999999999887 4343 34555555599999999998555553 8999999999988887754 456899
Q ss_pred EEccCCCEEEEeC---Ce-EEEEECCCCcee----eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 166 AVSSDGKMLATAA---GQ-LKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 166 ~~~p~~~~l~~~~---g~-i~lwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+|+|+|+++++++ +. |.+|++.....+ .....+...+..++|+|+|+++++++..++.|.+||+.+++...
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~- 212 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT- 212 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-
Confidence 9999998766654 57 999998764332 12223345689999999999887777678999999998876410
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhh
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA 316 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 316 (630)
....+... .....+.|+ |+|+++++++ .++.|.+||..+++..... ..... +....
T Consensus 213 -~~~~~~~~-~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~~--~~~~~--------- 269 (331)
T 3u4y_A 213 -LLNAVGTN-NLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVK-----SFGHG--LLIDP--------- 269 (331)
T ss_dssp -EEEEEECS-SCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEE-----EEECC--CCCCC---------
T ss_pred -eeeeccCC-CCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeec-----ccccc--cccCC---------
Confidence 12222222 223445565 9999877665 4778999999877541100 00000 00000
Q ss_pred ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 317 ~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
.+......++|+|||++|.+++..++.+++|++...
T Consensus 270 ------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 270 ------------------------------RPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp ------------------------------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred ------------------------------CCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 000112568899999988567777789999998653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=225.13 Aligned_cols=321 Identities=9% Similarity=0.043 Sum_probs=207.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|+|||+++++ +.||+|++||+.+++....+..+... ...+..++|.|. ++.
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~---------------~~~v~~~~~SpD---------g~~ 74 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REY 74 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSE
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc---------------ccccceEEECCC---------CCE
Confidence 45699999998776 68999999999999887766544321 012344555543 777
Q ss_pred EEEEeCC---------CeEEEEEccCCeeeEEcc--CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 89 LVLGTGG---------GDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 89 l~~~~~~---------g~v~iwd~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
|++++.+ +.|.+||+.+++.. .+. .+|...+..++|+|||+.|+.++. +.|++||+.+++..+....
T Consensus 75 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence 8888764 77899999998762 222 245556899999999999998876 7899999999887766554
Q ss_pred CCCCe------------------EEEEEccCCCEEEEeC--C----------------------------------eEEE
Q 006808 158 STKGI------------------SCMAVSSDGKMLATAA--G----------------------------------QLKT 183 (630)
Q Consensus 158 ~~~~v------------------~~l~~~p~~~~l~~~~--g----------------------------------~i~l 183 (630)
+...+ .+++|+|||++|++++ + .|++
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~ 232 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV 232 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence 44333 7899999999998875 2 7999
Q ss_pred EECCCCceeeEeecC------CCCeEEEEEeeCCcEEEEEeeC---CCeEEEEEcCCCccccceeeeeecCCceee---e
Q 006808 184 FNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFM---D 251 (630)
Q Consensus 184 wd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~ 251 (630)
||+.+++....+..+ ...+.+++|+|||+++++.+.. +..|++||+.+++.. .+....+...+. .
T Consensus 233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDESEAWLHRQNE 309 (723)
T ss_dssp EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEECSSCCCCCCC
T ss_pred EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---EEEEeccCCEEeccCC
Confidence 999988765666544 5678999999999988776532 357999999887643 222222222211 2
Q ss_pred eEEecCCccCCCCCEEEEE--ecCC------cEEEEE-cCCccc--ccccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 252 CRCIDNGGVDDAGLYVLAI--SETG------VCYIWY-GQNIEE--LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~--s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
...|+ |||++|+.. ..+| .|++|| ...+.. ..........+.....++|+++ .|+..+.+
T Consensus 310 ~~~~s-----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~----~l~~~~~~ 380 (723)
T 1xfd_A 310 EPVFS-----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN----KIYFLSTE 380 (723)
T ss_dssp CCEEC-----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT----EEEEEESS
T ss_pred CceEc-----CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC----EEEEEEcC
Confidence 44565 999977754 4566 577777 344430 2222211111111112678877 66554443
Q ss_pred ccccCCceeEEEEEcCccCceeeEEec---cCCCcEEEeecCCcceeeccccce
Q 006808 321 DIVKPASVHTFVAYGLLLKPSFQKILV---NSGEDINLNCSQDGVLLPMSQSLL 371 (630)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~~s~s~d 371 (630)
+. ....+++...-.. ......+.. |...+..++|||||++|+++.+..
T Consensus 381 ~~--~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 381 DL--PRRRQLYSANTVG-NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp SC--TTCCEEEEECSST-TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CC--CcceEEEEEeCCC-CCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence 10 0122344432110 001112222 566788999999999885555433
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-20 Score=188.84 Aligned_cols=265 Identities=13% Similarity=0.087 Sum_probs=193.0
Q ss_pred EeEECCCCCEEEEeeC-------CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 10 LTSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 10 ~~~fs~dg~~las~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++|+|+|+++++++. ++.|.+||..+++.+..+.... . ...+.|.+.
T Consensus 45 ~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~------------------~~~~~~s~d------ 99 (353)
T 3vgz_A 45 EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-K------------------PFGATINNT------ 99 (353)
T ss_dssp EEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-C------------------CCSEEEETT------
T ss_pred ceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-C------------------cceEEECCC------
Confidence 4599999998888774 5689999999999887775321 1 223444443
Q ss_pred ccCCc-EEEEEeCCCeEEEEEccCCeeeEEccCCCCC--------CEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCce
Q 006808 83 KLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPG--------GVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSL 151 (630)
Q Consensus 83 ~~~~~-~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~--------~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~ 151 (630)
++ +++++..++.|.+||+.+++.+..+..++.. .+.+++|+|+|+++++++ .++.|.+||+.+++.
T Consensus 100 ---g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~ 176 (353)
T 3vgz_A 100 ---TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL 176 (353)
T ss_dssp ---TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred ---CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence 45 4445555789999999999887666533222 278999999999877776 478899999999999
Q ss_pred eEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec----CCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
+..+..+...+.+++|+|+|+++++++ +.|.+||+.+++.+..+.. +...+.+++|+|+++++++++..++.|.
T Consensus 177 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 177 KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEE
Confidence 888875666688999999999988887 8999999999988877753 4556888999999998888876669999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEeeccCCCc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (630)
+||+.+++.. ........ ..+.++ |+|+++++++ .++.|.+||..+++.+.......... ...++
T Consensus 257 ~~d~~~~~~~---~~~~~~~~----~~~~~s-----~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~s 322 (353)
T 3vgz_A 257 VVDTRNGNIL---AKVAAPES----LAVLFN-----PARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPN--SLALS 322 (353)
T ss_dssp EEETTTCCEE---EEEECSSC----CCEEEE-----TTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEE--EEEEC
T ss_pred EEECCCCcEE---EEEEcCCC----ceEEEC-----CCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCC--eEEEc
Confidence 9999887643 22222222 235555 8998766665 68999999999887765543322111 11256
Q ss_pred ccccchhhhhhhcccc
Q 006808 305 KSQKSATAAIFAAKLQ 320 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d 320 (630)
++++ .++++...
T Consensus 323 ~dg~----~l~v~~~~ 334 (353)
T 3vgz_A 323 ADGK----TLYVSVKQ 334 (353)
T ss_dssp TTSC----EEEEEEEC
T ss_pred CCCC----EEEEEEcc
Confidence 6665 45555443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-21 Score=203.03 Aligned_cols=273 Identities=10% Similarity=0.062 Sum_probs=201.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~ 163 (630)
+.++++++.++.|.+||..+++++.++..+|. +.+++|+|+|+++++++.|++|.+||+ .+++++.++.. ...+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~ 225 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEAR 225 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcc
Confidence 66788888999999999999999877765554 899999999999999999999999999 88999888884 55679
Q ss_pred EEEEcc----CCCEEEEeC---CeEEEEECCCCceeeEeec----------CCC-CeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 164 CMAVSS----DGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HPG-AVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 164 ~l~~~p----~~~~l~~~~---g~i~lwd~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.++|+| +|+++++++ ++|.+||..+++++.++.. |.. .+.++.++|++..++++...++.|.
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~ 305 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 305 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence 999999 999999887 8999999999998888764 223 7889999999888877777899999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEee--ccCC
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSS--SEDV 302 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~ 302 (630)
+||+.+.+.. .+..+.+ ........|+ |+|+++++++ .++.|.+||..+++.+........... ....
T Consensus 306 vvd~~~~~~l---~~~~i~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 306 LVNYKDIDNL---TVTSIGA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp EEECTTSSSC---EEEEEEC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred EEEecCCCcc---eeEEecc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 9999886533 1222332 2234445666 9999877665 588999999999987654332110000 0000
Q ss_pred Ccccccchhhhhhhcc-ccccccCCceeEEEEEcCc------cCceeeEEeccCCCcEEEeecCCcceeecccc------
Q 006808 303 NSKSQKSATAAIFAAK-LQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS------ 369 (630)
Q Consensus 303 ~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s------ 369 (630)
+.|++. +.+++++ .++.+. +..-.. ....++++.+|...+..+.++|||++| .+++
T Consensus 377 ~~p~~g---~~~~s~~~~d~~V~-------v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l-~v~~~~~~~~ 445 (543)
T 1nir_A 377 VHPKYG---PVWSTSHLGDGSIS-------LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL-YVDTTFNPDA 445 (543)
T ss_dssp EETTTE---EEEEEEBSSSSEEE-------EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE-EECCTTCSSH
T ss_pred CCCCCc---cEEEeccCCCceEE-------EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE-EEecCCCCCc
Confidence 233322 1333433 233322 222111 156788999999999999999999999 6554
Q ss_pred -ceeccccceecc
Q 006808 370 -LLKSKRGRYVQN 381 (630)
Q Consensus 370 -~d~~~~~w~~~~ 381 (630)
.++++.+|++.+
T Consensus 446 ~~~~~v~v~d~~~ 458 (543)
T 1nir_A 446 RISQSVAVFDLKN 458 (543)
T ss_dssp HHHTCEEEEETTC
T ss_pred ccCceEEEEECCC
Confidence 378999999864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-20 Score=192.99 Aligned_cols=224 Identities=15% Similarity=0.136 Sum_probs=170.3
Q ss_pred CCEEEEeeCC------CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 17 LDYFAICSGD------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 17 g~~las~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
+..+++++.+ ++|++||+.. .....+.+|... +.+++|.|. +..|+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~------------------v~~~~~Spd---------g~~la 194 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQP------------------LMSPAWSPD---------GSKLA 194 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSC------------------EEEEEECTT---------SSEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCc------------------ceeeEEcCC---------CCEEE
Confidence 6677777654 7999999974 445555544443 445555554 77788
Q ss_pred EEeCCC---eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCc--EEEEeCCCCceeEEeecCCCCeEE
Q 006808 91 LGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 91 ~~~~~g---~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+++.++ .|++||+.+++.. .+ ..|...+.+++|+|+|+.|+ +++.++. |++||+.+++. ..+..|...+.+
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred EEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 888775 8999999998875 33 35778999999999999877 6666654 99999998876 566778889999
Q ss_pred EEEccCCCEEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCCccccc
Q 006808 165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSA 237 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~~~~~~ 237 (630)
++|+|+|++|++++ + .|++||+.+++. ..+..|...+.+++|+|+|++|++++..+ ..|++||+.+++..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-- 348 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-- 348 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--
Confidence 99999999888776 2 788999988764 44556777899999999999999887542 58999999887632
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC---cEEEEEcCCc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNI 284 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~ 284 (630)
.+.... .+....|+ |+|++|++++.++ .|++||+..+
T Consensus 349 ----~l~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 349 ----VLSSTF-LDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp ----ECCCSS-SCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ----EecCCC-CcCCeEEc-----CCCCEEEEEEcCCCccEEEEEECCCC
Confidence 122222 44556666 9999999998877 7999998644
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=189.55 Aligned_cols=269 Identities=12% Similarity=0.038 Sum_probs=192.1
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEEeCCC
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG 96 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g 96 (630)
++|++++.++.|++||..+++.+..+..... ......++|.+. +..+ +++..++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~s~d---------g~~l~v~~~~~~ 56 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADA----------------GPTPMVPMVAPG---------GRIAYATVNKSE 56 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTC----------------TTCCCCEEECTT---------SSEEEEEETTTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCC----------------CCCccceEEcCC---------CCEEEEEeCCCC
Confidence 4789999999999999999998877652211 001223444443 4444 5556678
Q ss_pred eEEEEEccCCeeeEEccCCCC----CCEEEEEEecCCCEEEEEe------------CCCcEEEEeCCCCceeEEeecCCC
Q 006808 97 DVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~----~~v~~~~~s~~g~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
.|.+||+.+++.+..+..++. ..+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.. ..
T Consensus 57 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 57 SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred eEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 999999999988765543331 2577899999999988886 579999999999988887775 45
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC------------------
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER------------------ 222 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~------------------ 222 (630)
.+.+++|+|+|++++++++.|++||+.+++.+..+..+... ..+.|+|++.++++++..++
T Consensus 136 ~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 136 QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp SCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred CcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence 67889999999999888999999999999887777644311 12378999987766553333
Q ss_pred -----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEe
Q 006808 223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297 (630)
Q Consensus 223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (630)
.|.+||+.+++.. .............+.++ |+|++++++ ++.|++||+.+++.+....
T Consensus 215 ~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~~~~~~~------ 277 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRVP------ 277 (337)
T ss_dssp GGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEEE------
T ss_pred cccccceEEEeCCCCCce----EeecCCCCCceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCcCcceec------
Confidence 4689999887643 11222222233445666 999999888 6899999987664322110
Q ss_pred eccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccc
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR 377 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w 377 (630)
....+.+++|+|||++| ++++.++.+++|
T Consensus 278 --------------------------------------------------~~~~~~~~~~s~dg~~l-~~~~~~~~i~v~ 306 (337)
T 1pby_B 278 --------------------------------------------------LPHSYYSVNVSTDGSTV-WLGGALGDLAAY 306 (337)
T ss_dssp --------------------------------------------------CSSCCCEEEECTTSCEE-EEESBSSEEEEE
T ss_pred --------------------------------------------------CCCceeeEEECCCCCEE-EEEcCCCcEEEE
Confidence 00135678999999988 666779999999
Q ss_pred eecc
Q 006808 378 YVQN 381 (630)
Q Consensus 378 ~~~~ 381 (630)
++..
T Consensus 307 d~~~ 310 (337)
T 1pby_B 307 DAET 310 (337)
T ss_dssp ETTT
T ss_pred ECcC
Confidence 9854
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-21 Score=213.03 Aligned_cols=334 Identities=9% Similarity=0.033 Sum_probs=205.4
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEE-EEecccccccccccccccc-cccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.|. |+.+++++.|+ | +||+.+|+.+ ..+..+..... .++..- ........+.+++|.+. . .+
T Consensus 32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~spd-~---------~~ 95 (706)
T 2z3z_A 32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--LMPEGCKFQTTDAFPSFRTLDAGR-G---------LV 95 (706)
T ss_dssp EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--TC-----------CCCEEEEETTT-T---------EE
T ss_pred cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--hccchhccccccccCceeEEECCC-C---------eE
Confidence 777 67778888888 8 9999999873 33332221000 000000 00000134677788764 2 23
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-----CceeEEeecCCCC---
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKG--- 161 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~--- 161 (630)
+.+ .++.|++||+.+++..... .+...+.+++|+|+|+.|+++ .++.|++||+.+ ++.......+...
T Consensus 96 ~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 333 4699999999998765333 466778999999999999885 689999999998 7766544433332
Q ss_pred -----------eEEEEEccCCCEEEEeC-----------------------------------CeEEEEECCCCceeeEe
Q 006808 162 -----------ISCMAVSSDGKMLATAA-----------------------------------GQLKTFNCSDHKKMQKF 195 (630)
Q Consensus 162 -----------v~~l~~~p~~~~l~~~~-----------------------------------g~i~lwd~~~~~~~~~~ 195 (630)
+.+++|+|||++|++++ ..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 48899999999998874 57999999988754433
Q ss_pred e--cCCCCeEEEEEeeCCcEEEEEeeCCC-----eEEEEEcCCCccccceeeeeecCCce--eeeeEEecCCccCC--CC
Q 006808 196 S--GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGVDD--AG 264 (630)
Q Consensus 196 ~--~h~~~v~~l~~sp~~~~l~~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~ 264 (630)
. .|...+.+++|+|+|++|++++. ++ .|++||+.+++.. ..+....+... .+....|+ | +|
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~v~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~s-----p~~dg 323 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEV-NRAQNECKVNAYDAETGRFV--RTLFVETDKHYVEPLHPLTFL-----PGSNN 323 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEE-CTTSCEEEEEEEETTTCCEE--EEEEEEECSSCCCCCSCCEEC-----TTCSS
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEe-CCCCCeeEEEEEECCCCcee--eEEEEccCCCeECccCCceee-----cCCCC
Confidence 2 46678999999999999988774 54 8999999987321 11221112211 12344565 9 99
Q ss_pred CEEEEEecCCcEEEEEcC-CcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceee
Q 006808 265 LYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQ 343 (630)
Q Consensus 265 ~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~ 343 (630)
+++++++.+|.++||.+. ++..+.........+.....++++++ .|+.++.+.. .....++...-.. ....
T Consensus 324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~----~l~~~~~~~~--~~~~~l~~~d~~~--~~~~ 395 (706)
T 2z3z_A 324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT----RLYFESTEAS--PLERHFYCIDIKG--GKTK 395 (706)
T ss_dssp EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS----EEEEEESSSC--TTCBEEEEEETTC--CCCE
T ss_pred EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC----EEEEEecCCC--CceEEEEEEEcCC--CCce
Confidence 999999999999999875 44433333222211111112677776 5655444321 0012344433111 1122
Q ss_pred EEeccCCCcEEEeecCCcceeeccccce---eccccceeccc
Q 006808 344 KILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQNR 382 (630)
Q Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~~~~ 382 (630)
.+ .|...+.+++|||||++++++++.+ ..+++|++..+
T Consensus 396 ~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 396 DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 22 3667789999999999884444433 45888987544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-20 Score=181.52 Aligned_cols=221 Identities=11% Similarity=0.063 Sum_probs=154.8
Q ss_pred EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEE
Q 006808 22 ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLAL 101 (630)
Q Consensus 22 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iw 101 (630)
.++.|++|++||+.+++... +..+.. .+.++.|.|. +.+|++++ ++.|++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~------------------~v~~~~~spd---------g~~l~~~~-~~~i~~~ 67 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPE------------------LFEAPNWSPD---------GKYLLLNS-EGLLYRL 67 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESS------------------CCEEEEECTT---------SSEEEEEE-TTEEEEE
T ss_pred CCCcceeEEEEeCCCCceee-eccCCc------------------ceEeeEECCC---------CCEEEEEc-CCeEEEE
Confidence 34568999999999887664 333333 3445666554 66777765 7899999
Q ss_pred EccC-CeeeEEccCCC-CCCEEEEEEecCCCEEEEEe--CCCcEEE--EeCCCCceeEEeecCCCCeEEEEEccCCCEEE
Q 006808 102 AVSA-GQLKWRLSDCH-PGGVSAISFATHGSCIYSAG--ADGMVCE--IDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (630)
Q Consensus 102 d~~~-~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~--~dg~v~i--wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 175 (630)
|+.+ ++..... ..| ...+.+++|+|+|++|++++ .++...+ |++.+++ ...+..+ ..+.+++|+|++++|+
T Consensus 68 d~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 68 SLAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFT 144 (297)
T ss_dssp ESSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEE
T ss_pred eCCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEE
Confidence 9999 7765333 344 47789999999999999988 3344444 5555554 3444433 3589999999999887
Q ss_pred E-eC--CeEEEEEC--CCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceee
Q 006808 176 T-AA--GQLKTFNC--SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (630)
Q Consensus 176 ~-~~--g~i~lwd~--~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (630)
. ++ +.+++|++ .++ ....+..|...+.++.|+|+++++++++..++.+++|++...... ...+......+
T Consensus 145 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~ 219 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS----VERITDSAYGD 219 (297)
T ss_dssp EEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----EEECCCCSEEE
T ss_pred EEECCCCceEEEEEECCCC-cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC----cEEEecCCccc
Confidence 4 43 77888875 344 345666788899999999999998887755888999988632211 22333334455
Q ss_pred eeEEecCCccCCCCCEEEEEecC-----------CcEEEEEcCCc
Q 006808 251 DCRCIDNGGVDDAGLYVLAISET-----------GVCYIWYGQNI 284 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~d-----------g~i~iwd~~~~ 284 (630)
....|+ |+|++|++++.+ +.|++||+.++
T Consensus 220 ~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 220 WFPHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp EEEEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCeEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 566676 999999988876 45888887654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=182.82 Aligned_cols=274 Identities=14% Similarity=0.160 Sum_probs=177.0
Q ss_pred EEEEeeCCCcEEEEECC-CCcE--EEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 19 YFAICSGDARIKIWDTL-KGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~-~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++++++.|+.|++|++. ++.. +..+. +.. .+.+++|.+. +.+|++++.+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~spd---------g~~l~~~~~~ 58 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPG------------------QVQPMVVSPD---------KRYLYVGVRP 58 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS------------------CCCCEEECTT---------SSEEEEEETT
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCC------------------CCceEEECCC---------CCEEEEeecC
Confidence 44455779999999985 3432 22221 222 2345556554 6667777776
Q ss_pred -CeEEEEEcc--CCee--eEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCC---CCceeEEeecCCCCeEEEE
Q 006808 96 -GDVLALAVS--AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL---TGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 96 -g~v~iwd~~--~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~ 166 (630)
+.|.+|++. ++.. +..+. .+ ..+.+++|+|+|+++++++. ++.|.+||+. .++.+..+.. ...+.+++
T Consensus 59 ~~~v~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~ 135 (343)
T 1ri6_A 59 EFRVLAYRIAPDDGALTFAAESA-LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSAN 135 (343)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEE-CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCE
T ss_pred CCeEEEEEecCCCCceeeccccc-cC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEE
Confidence 899999997 5553 22332 22 37899999999998876664 8899999994 3445555553 34688999
Q ss_pred EccCCCEEEEeC---CeEEEEECCC-Cceee----Eeec-CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC--Cccc
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQ----KFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--VKKQ 235 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~-~~~~~----~~~~-h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~--~~~~ 235 (630)
|+|+|+++++++ +.|++||+.+ ++... .+.. ....+.+++|+|+++++++++..++.|.+|++.. +...
T Consensus 136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 999999877765 8999999987 65432 2332 3347889999999998877765689999999964 3221
Q ss_pred cceeeeeecCC---ceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchh
Q 006808 236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT 311 (630)
Q Consensus 236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (630)
........... ......+.|+ |+|++|++++ .++.|.+|++..... . .. ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s-----~dg~~l~v~~~~~~~i~v~d~~~~~~----~-~~-~~-------------- 270 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGS----V-LS-KE-------------- 270 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSC----C-EE-EE--------------
T ss_pred EEeeccccCccccccCCccceEEC-----CCCCEEEEEecCCCEEEEEEEcCCCC----c-eE-Ee--------------
Confidence 00011111111 1223345666 9998887554 689999999852100 0 00 00
Q ss_pred hhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 312 ~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
..+..+. .+..++|+|||++|.+++..++.+++|++.
T Consensus 271 -------------------------------~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 271 -------------------------------GFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp -------------------------------EEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred -------------------------------eeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 0011111 266789999999884555578999999764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-19 Score=180.34 Aligned_cols=237 Identities=9% Similarity=0.046 Sum_probs=167.1
Q ss_pred EeEECCCCCEEEEeeC-CCcEEEEECCCCcE-EEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+++|+|+|+++++++. ++.|.+||..+++. ...+..+..... +++|.+. +.
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~------------------~~~~s~d---------g~ 96 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA------------------DVDITPD---------DQ 96 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC------------------CEEECTT---------SS
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc------------------ceEECCC---------CC
Confidence 5699999997776665 89999999999887 555543322221 2444443 66
Q ss_pred EEEEEeCCC---eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCc-EEEEeCCCCcee----EEeecC
Q 006808 88 LLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM-VCEIDPLTGSLL----GKFRAS 158 (630)
Q Consensus 88 ~l~~~~~~g---~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~-v~iwd~~~~~~~----~~~~~~ 158 (630)
+++++..++ .|.+||+.+++.+..+. +...+.+++|+|+|++++++ ..++. |.+|++.....+ ......
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 174 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG 174 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence 677555553 89999999998876653 34567999999999866555 55578 999998754332 122233
Q ss_pred CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
...+.+++|+|+|+++++++ +.|++||+.+++. +..+..+ ..+..++|+|+|+++++++..++.|.+||+.++
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 45689999999999665554 7999999999988 7777643 567899999999988877656788999999887
Q ss_pred ccccceeeeeecCC----ce---eeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCc
Q 006808 233 KKQSASCVLAMEHP----AV---FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI 284 (630)
Q Consensus 233 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~ 284 (630)
+.. .+...... .. ....+.|+ |+|++|++++. ++.|.+||+...
T Consensus 254 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 254 TLS---FVKSFGHGLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEE---EEEEEECCCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSC
T ss_pred cee---eecccccccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCC
Confidence 642 11111111 11 11234665 99998876655 669999998654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-19 Score=178.57 Aligned_cols=235 Identities=11% Similarity=0.132 Sum_probs=161.2
Q ss_pred eEeEECCCCCEEEEeeCC-CcEEEEECC--CCcEE--EEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGD-ARIKIWDTL--KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d-g~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+++|+|+|++|++++.+ +.|.+|++. ++... ..+..+. .+..++|.+.
T Consensus 41 ~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~s~d------- 94 (343)
T 1ri6_A 41 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-------------------SLTHISTDHQ------- 94 (343)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-------------------CCSEEEECTT-------
T ss_pred ceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-------------------CCcEEEEcCC-------
Confidence 345999999999988876 999999987 55532 3332111 3345666554
Q ss_pred cCCcEEEEEe-CCCeEEEEEcc---CCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCC-CceeE----
Q 006808 84 LGSSLLVLGT-GGGDVLALAVS---AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GSLLG---- 153 (630)
Q Consensus 84 ~~~~~l~~~~-~~g~v~iwd~~---~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~-~~~~~---- 153 (630)
+..+++++ .++.|.+||+. .......+. ....+.+++|+|+|+++++++ .++.|.+||+.+ ++...
T Consensus 95 --g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 170 (343)
T 1ri6_A 95 --GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 170 (343)
T ss_dssp --SSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred --CCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence 56566655 47889999994 333443332 334689999999999888877 899999999987 65432
Q ss_pred Eeec-CCCCeEEEEEccCCCEEEEeC---CeEEEEECCC--Cce--eeEee----cC--CCCeEEEEEeeCCcEEEEEee
Q 006808 154 KFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFS----GH--PGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 154 ~~~~-~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~--~~~--~~~~~----~h--~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.+.. ....+.+++|+|+++++++++ +.|++|++.. ++. ...+. ++ ...+..++|+|+|++|++++.
T Consensus 171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence 2232 334788999999999776554 7999999953 432 22222 11 235678999999999887765
Q ss_pred CCCeEEEEEcCC--CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcC
Q 006808 220 GERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQ 282 (630)
Q Consensus 220 ~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~ 282 (630)
.++.|.+|++.. +... ....+..... ...+.|+ |+|++|++++ .++.|.+|++.
T Consensus 251 ~~~~i~v~d~~~~~~~~~---~~~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLS---KEGFQPTETQ-PRGFNVD-----HSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTTEEEEEEECTTSCCEE---EEEEEECSSS-CCCEEEC-----TTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCceE---EeeeecCCCc-cceEEEC-----CCCCEEEEecCCCCeEEEEEEc
Confidence 689999999983 2211 2222222222 4556666 9999988887 58999999543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-20 Score=211.39 Aligned_cols=267 Identities=11% Similarity=-0.022 Sum_probs=182.9
Q ss_pred cEEEEEeCCCeEEEEEccC-CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec--------
Q 006808 87 SLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-------- 157 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------- 157 (630)
.+++++..+|.+.||.+.. +.....+ ..|. .+..++|+|+|++++.+ .++.|++||+... .+..+..
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~ 290 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPED 290 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCS
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccc
Confidence 4555666778888887653 3233233 2344 46677999999988887 5899999999544 3335544
Q ss_pred ---CCCCeEEEEEc-cCCCEEEEeC-CeEEEEECCCCceeeEeecCCC-CeEEEEEeeCCcEEEEEeeCCCeEE-EEEcC
Q 006808 158 ---STKGISCMAVS-SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIA-LWRTD 230 (630)
Q Consensus 158 ---~~~~v~~l~~~-p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l~~~~~~d~~i~-vwd~~ 230 (630)
|...+.+++|+ |+|++|++++ +.|++|++.++... .+..|.. .+..++|+ +|+.|++++ .+..+. +|++.
T Consensus 291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~ 367 (1045)
T 1k32_A 291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYR 367 (1045)
T ss_dssp EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETT
T ss_pred ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECC
Confidence 23368999999 9999998887 89999999877644 4666777 89999999 999999887 477888 99988
Q ss_pred CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccch
Q 006808 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA 310 (630)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (630)
.+... .+. .+...+....|+ |+|++|++++.++.|++||+.+++...........+ ....|+|+++
T Consensus 368 ~~~~~----~l~--~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v-~~~~~SpDG~-- 433 (1045)
T 1k32_A 368 TGKAE----KFE--ENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI-TDFTISDNSR-- 433 (1045)
T ss_dssp TCCEE----ECC--CCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC-CCEEECTTSC--
T ss_pred CCCce----Eec--CCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc-cceEECCCCC--
Confidence 76532 112 233344556676 999999999999999999999886543321111111 1122788888
Q ss_pred hhhhhhccccc--cc-cCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 311 TAAIFAAKLQD--IV-KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 311 ~~~i~~~~~d~--~~-~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+|++++.++ .. ...+..+.+.. ... .....+..|...+..++|+|||++| +.++.++..+.|+.
T Consensus 434 --~la~~~~~~~~~~~~~~~~~i~l~d-~~~-g~~~~l~~~~~~~~~~~~spdG~~l-~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 434 --FIAYGFPLKHGETDGYVMQAIHVYD-MEG-RKIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDR 500 (1045)
T ss_dssp --EEEEEEEECSSTTCSCCEEEEEEEE-TTT-TEEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECS
T ss_pred --eEEEEecCccccccCCCCCeEEEEE-CCC-CcEEEeeCCCcccCCceEcCCCCEE-EEEecccCCcCcch
Confidence 777766532 00 00112333332 211 2255667788889999999999999 77777777777764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-19 Score=205.10 Aligned_cols=241 Identities=12% Similarity=0.014 Sum_probs=178.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEec-ccccccccccCCcE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL-SVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~ 88 (630)
+.+|||||++||++. ++.|++|++..+. +..+..+..... ..+ ......+..+.|. |. +..
T Consensus 249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~-~~~------~~~~~~v~~~~~S~pd---------G~~ 310 (1045)
T 1k32_A 249 PRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESP-EDR------IISIPSKFAEDFSPLD---------GDL 310 (1045)
T ss_dssp EEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBC-CSE------EEECGGGGEEEEEECG---------GGC
T ss_pred eeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccccc-ccc------cccccccceeeecCCC---------CCE
Confidence 459999999999885 8999999995443 334443211000 000 0011235677787 54 556
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCC-CEEEEEEecCCCEEEEEeCCCcEE-EEeCCCCceeEEeecCCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADGMVC-EIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
|++++ ++.|.+|++.++... .+ ..|.. .+.+++|+ +|+.|++++.++.+. +||+.+++... +..+...+.+++
T Consensus 311 la~~~-~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~ 385 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVL-KV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMG 385 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEE-EC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEE
T ss_pred EEEEE-cCEEEEEcCCCCceE-Ec-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeE
Confidence 77766 889999999888764 33 35777 89999999 999999998888888 99998776543 446778899999
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC---------CeEEEEEcCCCccc
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------RYIALWRTDGVKKQ 235 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d---------~~i~vwd~~~~~~~ 235 (630)
|+|+|++|++++ +.|++||+.+++....+.+|...+.+++|+|+|++|++++..+ +.|++||+.+++..
T Consensus 386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~ 465 (1045)
T 1k32_A 386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 465 (1045)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE
Confidence 999999999887 7999999999988777778999999999999999998887422 48999999886522
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+..+........|+ |+|++|++++.++...+|+....
T Consensus 466 ------~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 466 ------AATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp ------ECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSS
T ss_pred ------EeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhcc
Confidence 222222233445566 99999999999888888876543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-19 Score=175.52 Aligned_cols=231 Identities=11% Similarity=0.058 Sum_probs=162.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.| .+++|+|+|++|++++ ++.|++||+.+ ++.......+ ....+.++.|.+.
T Consensus 42 ~~v--~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-----------------~~~~~~~~~~spd------ 95 (297)
T 2ojh_A 42 ELF--EAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-----------------ATICNNDHGISPD------ 95 (297)
T ss_dssp SCC--EEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-----------------CCCBCSCCEECTT------
T ss_pred cce--EeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-----------------ccccccceEECCC------
Confidence 456 4569999999999987 78999999998 7766544322 1223445666554
Q ss_pred ccCCcEEEEEeC--CCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCC-CceeEEee
Q 006808 83 KLGSSLLVLGTG--GGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLT-GSLLGKFR 156 (630)
Q Consensus 83 ~~~~~~l~~~~~--~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~-~~~~~~~~ 156 (630)
+..|++++. ++. |.+|+..++... .+. +...+.+++|+|+|+.|+ +++.++.+++|++.. +.....+.
T Consensus 96 ---g~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 96 ---GALYAISDKVEFGKSAIYLLPSTGGTPR-LMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp ---SSEEEEEECTTTSSCEEEEEETTCCCCE-ECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred ---CCEEEEEEeCCCCcceEEEEECCCCceE-Eee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 677888883 334 555555555532 332 233599999999999876 777899999998532 23345566
Q ss_pred cCCCCeEEEEEccCCCEEEEeC---CeEEEEECC-CCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC----------C
Q 006808 157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------R 222 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d----------~ 222 (630)
.+...+.+++|+|+|++|++++ +.+++|++. .+..+..+..|...+.+++|+|+|++|++++..+ +
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 6778899999999999877654 678888775 4556677777888899999999999998887421 5
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
.|++||+.+++.. .+.....+...+..+.|+ |++.+|++++.+.
T Consensus 250 ~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWS-----PDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCE---EEEEEEESTTTSCSCCBC-----TTSSEEEEEEECC
T ss_pred EEEEEecCCCCce---eeeccCCCCcccccceEC-----CCCCEEEEEEecc
Confidence 6999999887643 233222222233444555 9999998887754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-19 Score=180.60 Aligned_cols=238 Identities=11% Similarity=0.108 Sum_probs=173.7
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL- 89 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l- 89 (630)
+++++++.++++++.+++|++||..+++.+..+..+.. .....++|.+. +..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~s~d---------g~~~~ 58 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-----------------FGPGTAMMAPD---------NRTAY 58 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-----------------CSSCEEEECTT---------SSEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-----------------CCCceeEECCC---------CCEEE
Confidence 48899999999999999999999999998877653220 01224445443 4444
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCC-----CCCEEEEEEecCCCEEEEEeCC------------CcEEEEeCCCCce-
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSL- 151 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h-----~~~v~~~~~s~~g~~l~s~~~d------------g~v~iwd~~~~~~- 151 (630)
+++..++.|.+||+.+++....+...+ ...+.+++|+|+|+++++++.+ +.|.+||+.+++.
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 455568899999999998876654333 2237889999999999988865 8999999988543
Q ss_pred --eEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCC------------------------------
Q 006808 152 --LGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP------------------------------ 199 (630)
Q Consensus 152 --~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~------------------------------ 199 (630)
+..+.. ...+.+++|+|+|+ ++++++.|++||+.+++.+..+..+.
T Consensus 139 ~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T 1jmx_B 139 KPVRTFPM-PRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 216 (349)
T ss_dssp CCSEEEEC-CSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred ceeeeccC-CCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence 344443 34688999999999 66677779999999988766654321
Q ss_pred --------------------------------------CCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCCCccccceee
Q 006808 200 --------------------------------------GAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCV 240 (630)
Q Consensus 200 --------------------------------------~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~ 240 (630)
..+..++|+| ++++++++ ++.|.+||+.+++.. ..
T Consensus 217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~---~~ 290 (349)
T 1jmx_B 217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI---KA 290 (349)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE---EE
T ss_pred eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE---EE
Confidence 1345677789 99988876 679999999887643 22
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
....+ . ...+.++ |+|++|++++.++.|.+||..+++.+...
T Consensus 291 ~~~~~--~-~~~~~~s-----~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 291 ANLDH--T-YYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EECSS--C-CCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EcCCC--C-ccceEEC-----CCCCEEEEecCCCeEEEEeccccceeeee
Confidence 22222 2 2345565 89998888888999999999888765543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=188.88 Aligned_cols=210 Identities=13% Similarity=0.048 Sum_probs=152.5
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++++++++.++++++.++ ++||+............+.. ....+.+. ..-+....+.+++|.+. +.+|
T Consensus 41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~v~~l~~spd---------g~~l 107 (434)
T 2oit_A 41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPN--KIVDKVQG-LLVPMKFPIHHLALSCD---------NLTL 107 (434)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTT--CEEECCCC-EEECCSSCEEEEEECTT---------SCEE
T ss_pred EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcc--cccccCcc-ccccCCCcccEEEEcCC---------CCEE
Confidence 449999999999999887 89987642111000000000 00000000 00112346888999876 5667
Q ss_pred E----EEeCCCeEEEEEccCC--------ee--eEEccCCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEE
Q 006808 90 V----LGTGGGDVLALAVSAG--------QL--KWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 90 ~----~~~~~g~v~iwd~~~~--------~~--~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (630)
+ +|+.++.|+|||+.++ +. ......+|...|.+++|+|+ +.+|++++.||+|++||++++..+..
T Consensus 108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence 7 6777899999998765 11 13455679999999999997 78999999999999999999977777
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------CCCeEEEEEeeCCcEEEEEeeCCC---
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGER--- 222 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~l~~~~~~d~--- 222 (630)
...|...|.+++|+|+|++|++|+ |.|++||++ ++....+..| ...|.++.|++++.++++.+..+|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 777888999999999999999998 899999998 5555555433 337999999999988877665553
Q ss_pred ---eEEEEEcCCCc
Q 006808 223 ---YIALWRTDGVK 233 (630)
Q Consensus 223 ---~i~vwd~~~~~ 233 (630)
.+++|++....
T Consensus 267 ~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 267 TSPDVVMALLPKKE 280 (434)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCCceEEEEeccCC
Confidence 38999998653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-18 Score=172.84 Aligned_cols=242 Identities=11% Similarity=0.109 Sum_probs=158.4
Q ss_pred EeEECCCCCEEEEeeC---CCcEEEEECCCCcE--EEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICSG---DARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.++|+|||+ |++++. ++.|++|++.++.. +..+..+... ...++|.+.
T Consensus 44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~------------------p~~~a~spd-------- 96 (347)
T 3hfq_A 44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP------------------PAYVAVDEA-------- 96 (347)
T ss_dssp CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC------------------CSEEEEETT--------
T ss_pred eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC------------------CEEEEECCC--------
Confidence 459999999 554443 68999999977663 3332222222 234444443
Q ss_pred CCcEEEEEe-CCCeEEEEEccC-Ce--eeEEccC-C-------CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCce
Q 006808 85 GSSLLVLGT-GGGDVLALAVSA-GQ--LKWRLSD-C-------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSL 151 (630)
Q Consensus 85 ~~~~l~~~~-~~g~v~iwd~~~-~~--~~~~~~~-~-------h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~-~~~~ 151 (630)
+++|++++ .++.|.+|++.. +. .+..+.. + +...+.+++|+|+|+.+++...++.|.+|++. +++.
T Consensus 97 -g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 97 -RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp -TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred -CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence 66677777 678999999963 32 2222211 1 12348899999999966666678899999998 5543
Q ss_pred eE--EeecC-CCCeEEEEEccCCCEEEEeC---CeEEEEECCC--Cce--eeEeecCC------CCeEEEEEeeCCcEEE
Q 006808 152 LG--KFRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFSGHP------GAVRFMTFSDNGKYVL 215 (630)
Q Consensus 152 ~~--~~~~~-~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~--~~~--~~~~~~h~------~~v~~l~~sp~~~~l~ 215 (630)
.. .+..+ ...+..++|+|+|+++++++ +.|.+|++.. ++. +..+.... ..+..++|+|+|++|+
T Consensus 176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~ 255 (347)
T 3hfq_A 176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY 255 (347)
T ss_dssp EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence 32 22332 33678899999999777654 7999999874 442 22333222 3488899999999987
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEE--EcCCccc
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW--YGQNIEE 286 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iw--d~~~~~~ 286 (630)
+++..++.|.+|++...... ..+............+.|+ |+|++|++++. ++.|.+| |..+++.
T Consensus 256 v~~~~~~~v~v~~~~~~g~~--~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 256 VSNRGYNTLAVFAVTADGHL--TLIQQISTEGDFPRDFDLD-----PTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEETTTEEEEEEECGGGCE--EEEEEEECSSSCCCEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEeCCCCEEEEEEECCCCcE--EEeEEEecCCCCcCeEEEC-----CCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 76657899999999743211 1222222222334456666 99999988876 4899999 4455544
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=199.95 Aligned_cols=280 Identities=8% Similarity=-0.012 Sum_probs=194.4
Q ss_pred ceeeEEecccccccccccCCcEEEEEeC-CC-----eEEEEEccCCeeeEEccCCCC-----------------------
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG-----DVLALAVSAGQLKWRLSDCHP----------------------- 117 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g-----~v~iwd~~~~~~~~~~~~~h~----------------------- 117 (630)
.+..++|.+. ++.|++++. +| .|++||+.+++....+. .+.
T Consensus 38 ~~~~~~~Spd---------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 38 TLMKPKVAPD---------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCEEEEECTT---------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGTC--------------------C
T ss_pred CCCCceEecC---------CCEEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhcc
Confidence 4667778765 777888887 87 89999999988654432 222
Q ss_pred -CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceee
Q 006808 118 -GGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 118 -~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~ 193 (630)
..|.+++|+|||++|++++. +.|++||+.++. ....+..+...+.+++|+|||++|++++ +.|++||+.+++...
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence 23789999999999998876 899999999883 3445666778899999999999999888 899999999887655
Q ss_pred EeecCCCC----------------eEEEEEeeCCcEEEEEeeCCC---------------------------------eE
Q 006808 194 KFSGHPGA----------------VRFMTFSDNGKYVLSSAVGER---------------------------------YI 224 (630)
Q Consensus 194 ~~~~h~~~----------------v~~l~~sp~~~~l~~~~~~d~---------------------------------~i 224 (630)
....+... +.+++|||||++|++++. |+ .|
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 44433332 478999999999998874 43 78
Q ss_pred EEEEcCC-Cccccceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEec-----CCcEEEEEcCCcccccccCceeEE-
Q 006808 225 ALWRTDG-VKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEELRNTKATKIL- 296 (630)
Q Consensus 225 ~vwd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~- 296 (630)
++||+.+ ++.. .+... .+...+..+.+ |||++|++++. ++.|++||+.+++...........
T Consensus 266 ~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~-------pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 266 GVISPAEQAQTQ---WIDLGKEQDIYLARVNW-------RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp EEECSSTTCCCE---EECCCSCSSEEEEEEEE-------EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCceE---EecCCCCcceEEEEEEe-------CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 8999887 6532 11111 23333333333 48898887764 568999999888654322111100
Q ss_pred --eeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE-eecCCcceeecccccee-
Q 006808 297 --SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLK- 372 (630)
Q Consensus 297 --~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~- 372 (630)
......|+|+++ .+++++.++.. +++...- ... ...+..|...+..+ .|+|||+.|.++++.++
T Consensus 336 ~~~~~~~~~spdg~----~~~~~~~~g~~-----~l~~~~~--~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~ 403 (741)
T 2ecf_A 336 VPLHNSLRFLDDGS----ILWSSERTGFQ-----HLYRIDS--KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA 403 (741)
T ss_dssp CCCCSCCEECTTSC----EEEEECTTSSC-----EEEEECS--SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT
T ss_pred CCcCCceEECCCCe----EEEEecCCCcc-----EEEEEcC--CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC
Confidence 011233677776 67777666532 3333321 112 55667788888887 59999997756676666
Q ss_pred -ccccceec
Q 006808 373 -SKRGRYVQ 380 (630)
Q Consensus 373 -~~~~w~~~ 380 (630)
.+++|.+.
T Consensus 404 ~~~~l~~~~ 412 (741)
T 2ecf_A 404 RESQIYAVP 412 (741)
T ss_dssp TCBEEEEEE
T ss_pred ceEEEEEEE
Confidence 78899874
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=199.91 Aligned_cols=328 Identities=9% Similarity=0.013 Sum_probs=195.7
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++|+|||++++++ .|++|++||+.+++....+..+... ...+.++.|.|. ++.|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~SpD---------g~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK---------------SVNASNYGLSPD---------RQFV 74 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH---------------TTTCSEEEECTT---------SSEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc---------------ccceeeEEECCC---------CCeE
Confidence 45999999766554 6999999999999887665533221 012345555554 7778
Q ss_pred EEEeC---------CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe-ecCC
Q 006808 90 VLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST 159 (630)
Q Consensus 90 ~~~~~---------~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~ 159 (630)
++++. ++.|++||+.+++.+... .....+.+++|+|||+.|+.+. ++.|++||+.+++..+.. .++.
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 88776 688999999998873111 1125688999999999998885 789999999888765432 2222
Q ss_pred CCe-----------------EEEEEccCCCEEEEeC-C-----------------------------------eEEEEEC
Q 006808 160 KGI-----------------SCMAVSSDGKMLATAA-G-----------------------------------QLKTFNC 186 (630)
Q Consensus 160 ~~v-----------------~~l~~~p~~~~l~~~~-g-----------------------------------~i~lwd~ 186 (630)
..| .+++|+|||++|++++ . .|++||+
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~ 231 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT 231 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence 222 4899999999999876 1 7889999
Q ss_pred CCCcee--------eEeecCCCCeEEEEEeeCCcEEEEEeeC-C--CeEEEEE----cCCCccccceeeee---ecCCce
Q 006808 187 SDHKKM--------QKFSGHPGAVRFMTFSDNGKYVLSSAVG-E--RYIALWR----TDGVKKQSASCVLA---MEHPAV 248 (630)
Q Consensus 187 ~~~~~~--------~~~~~h~~~v~~l~~sp~~~~l~~~~~~-d--~~i~vwd----~~~~~~~~~~~~~~---~~~~~~ 248 (630)
.+++.. ..+.+|...+.+++|+||++.+++.... + ..|.+|| +.+++.. .+.. ..+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~---~~~~~~~~~~~~~ 308 (719)
T 1z68_A 232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP---KTQEHIEESRTGW 308 (719)
T ss_dssp SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC---GGGEEEEECSSSC
T ss_pred CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE---EEEecccccCCce
Confidence 888753 1234678889999999998766664321 1 2488899 7666533 1221 123322
Q ss_pred ee----eeEEecCCccCCCCCEEEE--EecCC--cEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcccc
Q 006808 249 FM----DCRCIDNGGVDDAGLYVLA--ISETG--VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ 320 (630)
Q Consensus 249 ~~----~~~~~~~~~~~~~~~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d 320 (630)
+. ....|+ |||+.|+. ...+| .|++|++.+++. .........+.... +. +++ .|+..+.+
T Consensus 309 ~~~~~~~~~~~s-----pdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~-~~-d~~----~i~~~~~~ 376 (719)
T 1z68_A 309 AGGFFVSTPVFS-----YDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIF-RV-TQD----SLFYSSNE 376 (719)
T ss_dssp SSSSSCCCCEEC-----TTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEE-EE-CSS----EEEEEESC
T ss_pred EccccCCccEEC-----CCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEE-EE-eCC----EEEEEEec
Confidence 22 144565 89986554 44556 566677766542 21111111011000 12 333 44433332
Q ss_pred ccccCCceeEEEEEcCccCceeeEEe----ccCCCcEEEeecCCcceeeccccce--eccccceec
Q 006808 321 DIVKPASVHTFVAYGLLLKPSFQKIL----VNSGEDINLNCSQDGVLLPMSQSLL--KSKRGRYVQ 380 (630)
Q Consensus 321 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~~s~s~d--~~~~~w~~~ 380 (630)
+.......+++......-....+.+. +|...+..+.|||||.+++++++.+ -.+.+|++.
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 00000122333333100000012222 2556788999999999885555544 345566664
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=167.30 Aligned_cols=233 Identities=12% Similarity=0.081 Sum_probs=152.1
Q ss_pred CcEEEEEeC---CCeEEEEEccCCeeeE-EccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCC-CC--ceeEEeec
Q 006808 86 SSLLVLGTG---GGDVLALAVSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL-TG--SLLGKFRA 157 (630)
Q Consensus 86 ~~~l~~~~~---~g~v~iwd~~~~~~~~-~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~-~~--~~~~~~~~ 157 (630)
+. +++++. ++.|.+|++.++.... .....+...+..++|+|+|++|++++ .++.|.+|++. ++ +.+..+..
T Consensus 51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~ 129 (347)
T 3hfq_A 51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH 129 (347)
T ss_dssp CE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred Ce-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec
Confidence 55 555544 5789999998776421 11124567789999999999988887 78999999996 33 23333332
Q ss_pred C---------CCCeEEEEEccCCCEEEEeC--CeEEEEECC-CCcee--eEeecC-CCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 158 S---------TKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKKM--QKFSGH-PGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 158 ~---------~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~-~~~~~--~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
. ...+.+++|+|+|+++++.. +.|++|++. +++.. ..+..+ ...+..++|+|+|+++++++..++
T Consensus 130 ~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~ 209 (347)
T 3hfq_A 130 SGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS 209 (347)
T ss_dssp CCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC
Confidence 1 12488999999999555544 799999998 45432 222322 236788999999998888776788
Q ss_pred eEEEEEcCC--Cccccceeeeeec-CC-----ceeeeeEEecCCccCCCCCEEEE-EecCCcEEEEEcCCcccccccCce
Q 006808 223 YIALWRTDG--VKKQSASCVLAME-HP-----AVFMDCRCIDNGGVDDAGLYVLA-ISETGVCYIWYGQNIEELRNTKAT 293 (630)
Q Consensus 223 ~i~vwd~~~--~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~ 293 (630)
.|.+|++.. ++.. ...... .. ......+.|+ |+|++|++ ...++.|.+|++.....+.
T Consensus 210 ~v~v~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~----- 276 (347)
T 3hfq_A 210 QIASLKYDTQTGAFT---QLGIVKTIPADYTAHNGAAAIRLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLT----- 276 (347)
T ss_dssp EEEEEEEETTTTEEE---EEEEEESSCTTCCSCCEEEEEEEC-----TTSCEEEEEEETTTEEEEEEECGGGCEE-----
T ss_pred EEEEEEecCCCCceE---EeeeeeecCCCCCCCCcceeEEEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEE-----
Confidence 999999875 3321 111111 11 1234556666 99998854 5568999999985211100
Q ss_pred eEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceec
Q 006808 294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS 373 (630)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~ 373 (630)
.+ ..+..+...+..++|+|||++|.+++..++.
T Consensus 277 --~~---------------------------------------------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 277 --LI---------------------------------------------QQISTEGDFPRDFDLDPTEAFVVVVNQNTDN 309 (347)
T ss_dssp --EE---------------------------------------------EEEECSSSCCCEEEECTTSSEEEEEETTTTE
T ss_pred --Ee---------------------------------------------EEEecCCCCcCeEEECCCCCEEEEEEcCCCc
Confidence 00 0111222345689999999988455555688
Q ss_pred ccccee
Q 006808 374 KRGRYV 379 (630)
Q Consensus 374 ~~~w~~ 379 (630)
+.+|.+
T Consensus 310 v~v~~~ 315 (347)
T 3hfq_A 310 ATLYAR 315 (347)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999965
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=167.93 Aligned_cols=233 Identities=9% Similarity=0.092 Sum_probs=172.5
Q ss_pred EeEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|+|+|++++++ ..++.|.+||..+++.+..+..+..... . ........++.|.+. ++.
T Consensus 93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~s~d---------g~~ 154 (353)
T 3vgz_A 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT------E---EVRPLQPRELVADDA---------TNT 154 (353)
T ss_dssp SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC------S---SCCCCEEEEEEEETT---------TTE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc------c---ccCCCCCceEEECCC---------CCE
Confidence 45999999966555 4579999999999998877764321100 0 000112445666654 555
Q ss_pred EEEEe--CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec----CCCCe
Q 006808 89 LVLGT--GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI 162 (630)
Q Consensus 89 l~~~~--~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v 162 (630)
+++++ .++.|.+||+.+++....+. .+...+.+++|+|+|+++++++.++.|.+||+.+++.+..+.. +...+
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 66665 47889999999999876664 3455688999999999999999999999999999998887765 34467
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
..++|+|+++++++++ +.|.+||+.+++.+..+..+. ...++|+|+++++++++..++.|.+||+.+++..
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---- 307 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---- 307 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----
Confidence 8899999999877765 799999999999888776443 2579999999988777756899999999887643
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
..+.... ....+.|+ |+|++|+++..++
T Consensus 308 -~~~~~~~-~~~~~~~s-----~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 -KTFDTPT-HPNSLALS-----ADGKTLYVSVKQK 335 (353)
T ss_dssp -EEEECCS-EEEEEEEC-----TTSCEEEEEEECC
T ss_pred -EEEecCC-CCCeEEEc-----CCCCEEEEEEccc
Confidence 2222222 33555666 8999887776654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-18 Score=170.45 Aligned_cols=241 Identities=10% Similarity=0.041 Sum_probs=172.8
Q ss_pred eEeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
..++|+|+|++++ +++.++.|.+||+.+++.+..+....... ......++.|.+. +.
T Consensus 37 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~d---------g~ 94 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------------RVKSLFGAALSPD---------GK 94 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------------EEECTTCEEECTT---------SS
T ss_pred cceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------------ccccccceEECCC---------CC
Confidence 3459999998765 55567899999999998877665211000 0001224455443 66
Q ss_pred EEEEEe------------CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 88 LLVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 88 ~l~~~~------------~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
.++++. .++.|.+||+.+++....+.. ...+.+++|+|+|++++++ ++.|.+||+.+++.+..+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeee
Confidence 677775 578999999999887766542 3567889999999988888 688999999999988777
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC---C-----------------------eEEEEECCCCcee-eEeecCCCCeEEEEEe
Q 006808 156 RASTKGISCMAVSSDGKMLATAA---G-----------------------QLKTFNCSDHKKM-QKFSGHPGAVRFMTFS 208 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~---g-----------------------~i~lwd~~~~~~~-~~~~~h~~~v~~l~~s 208 (630)
..+... ..+.|+|++..++.++ + .|.+||+.+++.. ..+..+...+.+++|+
T Consensus 171 ~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 171 PIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp CSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred eccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEEC
Confidence 654411 1237899988766544 2 4789999998764 2344566778899999
Q ss_pred eCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
|++++++++ ++.|.+||+.+++.. ..... .. ....+.|+ |+|++|++++.++.|++||+.+++.+.
T Consensus 250 ~dg~~l~~~---~~~v~~~d~~~~~~~---~~~~~--~~-~~~~~~~s-----~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 250 PAKTRAFGA---YNVLESFDLEKNASI---KRVPL--PH-SYYSVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp TTSSEEEEE---ESEEEEEETTTTEEE---EEEEC--SS-CCCEEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCCCEEEEe---CCeEEEEECCCCcCc---ceecC--CC-ceeeEEEC-----CCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 999998876 579999999887643 22222 22 23345565 999999999999999999999887654
Q ss_pred cc
Q 006808 289 NT 290 (630)
Q Consensus 289 ~~ 290 (630)
..
T Consensus 316 ~~ 317 (337)
T 1pby_B 316 QV 317 (337)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-17 Score=165.89 Aligned_cols=239 Identities=15% Similarity=0.138 Sum_probs=156.5
Q ss_pred EeEECCCCCEEEEeeCC----CcEEEEECCC--CcEEE--EecccccccccccccccccccccccceeeEEecccccccc
Q 006808 10 LTSFSPALDYFAICSGD----ARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 10 ~~~fs~dg~~las~s~d----g~i~vwd~~~--~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.++|+|||++|++++.+ +.|.+|++.. |.... ....+ ......+++ +
T Consensus 54 ~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~------------------~~~p~~~~~---d---- 108 (361)
T 3scy_A 54 YLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM------------------GADPCYLTT---N---- 108 (361)
T ss_dssp SEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS------------------SSCEEEEEE---C----
T ss_pred eEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC------------------CCCcEEEEE---C----
Confidence 34999999999998875 7999998765 44322 11111 112233343 2
Q ss_pred cccCCcEEEEEe-CCCeEEEEEccCCeeeEEcc-------------CCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 006808 82 RKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLS-------------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDP 146 (630)
Q Consensus 82 ~~~~~~~l~~~~-~~g~v~iwd~~~~~~~~~~~-------------~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~ 146 (630)
+..+++++ .++.|.+|++.....+.... ..+...+.+++|+|+|+++++++ .++.|.+|++
T Consensus 109 ----g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 109 ----GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp ----SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ----CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 55566665 57889999997543321110 11233468899999999776655 5889999988
Q ss_pred CCCce------e------EE-eecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce--eeEee---cCCCCeEEE
Q 006808 147 LTGSL------L------GK-FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFS---GHPGAVRFM 205 (630)
Q Consensus 147 ~~~~~------~------~~-~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~--~~~~~---~h~~~v~~l 205 (630)
..... + .. .......+.+++|+|+|+++++++ +.|.+|++.+++. +..+. .+......+
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i 264 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI 264 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE
Confidence 75431 1 12 222345678999999999877665 7999999987754 23332 233457899
Q ss_pred EEeeCCcEEEEEeeC-CCeEEEEEcC--CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEE-
Q 006808 206 TFSDNGKYVLSSAVG-ERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWY- 280 (630)
Q Consensus 206 ~~sp~~~~l~~~~~~-d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd- 280 (630)
+|+|+|++|+++... ++.|.+|++. +++.. .+..... ......+.|+ |+|++|++++ .++.|.+|.
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---~~~~~~~-g~~~~~~~~s-----pdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKVDETNGTLT---KVGYQLT-GIHPRNFIIT-----PNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---EEEEEEC-SSCCCEEEEC-----TTSCEEEEEETTTTEEEEEEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---EeeEecC-CCCCceEEEC-----CCCCEEEEEECCCCCEEEEEE
Confidence 999999999887755 5899999996 33321 1222222 2334455666 9999998887 578999965
Q ss_pred -cCCccc
Q 006808 281 -GQNIEE 286 (630)
Q Consensus 281 -~~~~~~ 286 (630)
..+++.
T Consensus 336 d~~~g~~ 342 (361)
T 3scy_A 336 DQATGLL 342 (361)
T ss_dssp CTTTCCE
T ss_pred ECCCCcE
Confidence 445544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-18 Score=185.59 Aligned_cols=235 Identities=11% Similarity=0.030 Sum_probs=159.3
Q ss_pred cccceeEeEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.|| .+++|+|||++||+++. ||+++||++.++.... +..+. ...+..+.|.|
T Consensus 22 ~~~--~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~-----------------~~~~~~~~~sp------- 74 (582)
T 3o4h_A 22 VEK--YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREP-----------------INSVLDPHYGV------- 74 (582)
T ss_dssp SCE--EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSC-----------------CSEECEECTTC-------
T ss_pred cch--heeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eeccc-----------------ccccccccCCC-------
Confidence 467 55699999999999887 9999999986665443 33222 12334455553
Q ss_pred ccCCcEEEEEeC---CCeEEEEEccC---CeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEe
Q 006808 83 KLGSSLLVLGTG---GGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 83 ~~~~~~l~~~~~---~g~v~iwd~~~---~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
..+++++.. +....+|.+.. +... .+.. ...+...+|+|+|+. +++++.++.+.+||+.+++.....
T Consensus 75 ---d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~ 148 (582)
T 3o4h_A 75 ---GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA 148 (582)
T ss_dssp ---SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred ---CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee
Confidence 234565554 34455655433 2222 3332 224556788888864 344444455669999988766555
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEE
Q 006808 156 RASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALW 227 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vw 227 (630)
..+. .+++|+|||++|++++ +.|++||+.+++.. .+..|...+..++|+|||++|+++. .++ .|++|
T Consensus 149 ~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~~ 223 (582)
T 3o4h_A 149 RLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVTV 223 (582)
T ss_dssp EESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEEE
T ss_pred cCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEEE
Confidence 4333 7899999999999765 37999999888754 6778888999999999999999655 677 89999
Q ss_pred EcCCCccccceeeeeecCCceeeee-------EEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 228 RTDGVKKQSASCVLAMEHPAVFMDC-------RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
|+.+++.. ....+...+... .+|+ |||..+++++.+|.+++|++ ++.+.
T Consensus 224 d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 224 DPRDGSVE-----DLELPSKDFSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp CTTTCCEE-----ECCCSCSHHHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred cCCCCcEE-----EccCCCcChhhhhhccccceeEc-----CCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 99887532 111222221111 1255 99988899999999999999 65544
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-18 Score=189.42 Aligned_cols=239 Identities=12% Similarity=0.050 Sum_probs=163.8
Q ss_pred eEeEECCCCCEEEEeeCC---------CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 9 ILTSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.+++|||||++||+++.+ +.|.+||+.+++. ..+...... ...+..+.|.|.
T Consensus 64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~---------------~~~~~~~~~SPd--- 124 (723)
T 1xfd_A 64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS---------------NAKLQYAGWGPK--- 124 (723)
T ss_dssp SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC---------------SCCCSBCCBCSS---
T ss_pred ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc---------------cccccccEECCC---
Confidence 455999999999999864 7788999998876 333321110 011223344443
Q ss_pred cccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC------------------EEEEEEecCCCEEEEEeCCC--
Q 006808 80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------------------VSAISFATHGSCIYSAGADG-- 139 (630)
Q Consensus 80 ~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~------------------v~~~~~s~~g~~l~s~~~dg-- 139 (630)
++.|+.++. +.|++||+.+++...... .+... +.+++|+|||++|++++.++
T Consensus 125 ------G~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~ 196 (723)
T 1xfd_A 125 ------GQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR 196 (723)
T ss_dssp ------TTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred ------CCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCc
Confidence 667777776 799999999887754333 33332 37899999999999887543
Q ss_pred --------------------------------cEEEEeCCCCceeEEeecC------CCCeEEEEEccCCCEEEEeC---
Q 006808 140 --------------------------------MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDGKMLATAA--- 178 (630)
Q Consensus 140 --------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~~~~l~~~~--- 178 (630)
.|++||+.+++....+..+ ...+.+++|+|||+++++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 276 (723)
T 1xfd_A 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (723)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred cceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC
Confidence 7999999988866666654 45789999999999887653
Q ss_pred ---CeEEEEECCCCceeeEeec-CCCCe----EEEEEeeCCcEEEEE-eeCCC------eEEEEE-cCCCcc--ccceee
Q 006808 179 ---GQLKTFNCSDHKKMQKFSG-HPGAV----RFMTFSDNGKYVLSS-AVGER------YIALWR-TDGVKK--QSASCV 240 (630)
Q Consensus 179 ---g~i~lwd~~~~~~~~~~~~-h~~~v----~~l~~sp~~~~l~~~-~~~d~------~i~vwd-~~~~~~--~~~~~~ 240 (630)
..|++||+.+++....+.. +...+ ..++|+|+|+.|+.. +..++ .|++|| ...+.. . ..
T Consensus 277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~~ 353 (723)
T 1xfd_A 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNI---QS 353 (723)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCC---CB
T ss_pred CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccce---eE
Confidence 4799999999987666543 33444 378999999987765 44566 566677 333330 1 11
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecC---CcEEEEEcCC
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQN 283 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~ 283 (630)
+. .+.........|+ |+|++|+..+.+ +.++||++..
T Consensus 354 l~-~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 354 IT-SGDWDVTKILAYD-----EKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SC-CSSSCEEEEEEEE-----TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred ee-cCCeEEEeeeEEc-----CCCCEEEEEEcCCCCcceEEEEEeC
Confidence 11 1223333445666 999999876655 7899999764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-17 Score=186.64 Aligned_cols=254 Identities=13% Similarity=0.098 Sum_probs=173.4
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCC-----CcEEEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
+.+. +++|||||++||++ .++.|++|++.+ ++.......+...+. ........+ ...+.++.|.|.
T Consensus 121 ~~~~--~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~---~g~~~~~ee-~~~~~~~~~SpD-- 191 (706)
T 2z3z_A 121 EETA--SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV---YGQAVHQRE-FGIEKGTFWSPK-- 191 (706)
T ss_dssp TCCT--TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE---ESSCCGGGC-TTCCCSEEECTT--
T ss_pred cccc--CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE---cccchhhhh-cCCCceEEECCC--
Confidence 3453 44999999999995 579999999988 776543332221110 000000000 112356677665
Q ss_pred ccccccCCcEEEEEe---------------------------------CCCeEEEEEccCCeeeEEcc-CCCCCCEEEEE
Q 006808 79 KKKRKLGSSLLVLGT---------------------------------GGGDVLALAVSAGQLKWRLS-DCHPGGVSAIS 124 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~---------------------------------~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~ 124 (630)
++.|++++ .++.|++||+.+++...... ..|...+.+++
T Consensus 192 -------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (706)
T 2z3z_A 192 -------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS 264 (706)
T ss_dssp -------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred -------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence 66777776 34569999999988653332 24677899999
Q ss_pred EecCCCEEEEEeCCC-----cEEEEeCCCCceeEEee-c-CCC---CeEEEEEcc--CCCEEEEeC--CeEEEEECC-CC
Q 006808 125 FATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR-A-STK---GISCMAVSS--DGKMLATAA--GQLKTFNCS-DH 189 (630)
Q Consensus 125 ~s~~g~~l~s~~~dg-----~v~iwd~~~~~~~~~~~-~-~~~---~v~~l~~~p--~~~~l~~~~--g~i~lwd~~-~~ 189 (630)
|+|+|++|++++.++ .|++||+.+++....+. . +.. .+.+++|+| +|+++++++ +.+++|.+. ++
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~ 344 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG 344 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence 999999999887775 89999999984443332 2 222 246789999 999888886 677777765 56
Q ss_pred ceeeEeecCCCCeEE-EEEeeCCcEEEEEeeCCC----eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCC
Q 006808 190 KKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG 264 (630)
Q Consensus 190 ~~~~~~~~h~~~v~~-l~~sp~~~~l~~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (630)
..+..+..|...+.. ++|+|+++.|++++..++ .|+.|++.++... .+.+... +....|+ |+|
T Consensus 345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~l~~~~~-~~~~~~s-----pdg 412 (706)
T 2z3z_A 345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPESG-MHRTQLS-----PDG 412 (706)
T ss_dssp CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE------ESCCSSS-EEEEEEC-----TTS
T ss_pred CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce------eccCCCc-eEEEEEC-----CCC
Confidence 677778888888877 799999998888775554 6777777765422 2223333 3456666 999
Q ss_pred CEEEEEecC----CcEEEEEcCCcc
Q 006808 265 LYVLAISET----GVCYIWYGQNIE 285 (630)
Q Consensus 265 ~~l~s~s~d----g~i~iwd~~~~~ 285 (630)
++|+..+.+ +.|++||..+++
T Consensus 413 ~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 413 SAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CEEEEEecCCCCCcEEEEEECCCCe
Confidence 988877554 469999998775
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-17 Score=163.55 Aligned_cols=240 Identities=13% Similarity=0.159 Sum_probs=159.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECC-CCcEEEEeccc-ccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
..++|+|+|++|++++.+ .|.+|++. +|+........ .+.+..+.++|+ +
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd---------------------------g 94 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN---------------------------T 94 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC---------------------------C
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC---------------------------C
Confidence 456999999999998887 99999997 77765433211 012233344443 5
Q ss_pred cE--EEEEe-------------CCCeEEEEEcc-CCeeeEEcc---CCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 006808 87 SL--LVLGT-------------GGGDVLALAVS-AGQLKWRLS---DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDP 146 (630)
Q Consensus 87 ~~--l~~~~-------------~~g~v~iwd~~-~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~ 146 (630)
+. ++++. .+|.+.+|++. .++....+. ..+...+.+++|+|+|+++++++ .++.|++||+
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence 53 34442 68899999997 455432221 12456799999999999888775 3679999999
Q ss_pred C-CCcee--EEee--cCCCCeEEEEEccCCCEEEEeC---CeEEEEECC--CCcee---eEee-------cCCC------
Q 006808 147 L-TGSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKKM---QKFS-------GHPG------ 200 (630)
Q Consensus 147 ~-~~~~~--~~~~--~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~--~~~~~---~~~~-------~h~~------ 200 (630)
. +++.. ..+. .+...+..++|+|+|+++++++ +.|.+|++. +++.. ..+. +|..
T Consensus 175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 254 (365)
T 1jof_A 175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL 254 (365)
T ss_dssp CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence 8 67653 3343 2356789999999999887765 789999765 45532 1221 1222
Q ss_pred CeEEEE-EeeCCcEEEEEeeCCC-----eEEEEEcC-CCccccceeee-eecCCceeeeeEEecCCccCC---CCCEEEE
Q 006808 201 AVRFMT-FSDNGKYVLSSAVGER-----YIALWRTD-GVKKQSASCVL-AMEHPAVFMDCRCIDNGGVDD---AGLYVLA 269 (630)
Q Consensus 201 ~v~~l~-~sp~~~~l~~~~~~d~-----~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~s 269 (630)
.+..++ |+|+|++|+++...+. .|.+|++. +++.. ... ...........+.++ | +|++|++
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---~~~~~~~~~~~~~~~~a~s-----p~~~dg~~l~v 326 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVS-----PCPWSDEWMAI 326 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEE-----ECTTCTTEEEE
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE---EeeeeeecCCCCcccceec-----CCCcCCCEEEE
Confidence 478999 9999999887764333 89999996 44321 111 121111122233444 7 8999999
Q ss_pred EecC-CcEEEEEcCCc
Q 006808 270 ISET-GVCYIWYGQNI 284 (630)
Q Consensus 270 ~s~d-g~i~iwd~~~~ 284 (630)
++.+ +.|.+|++...
T Consensus 327 ~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 327 TDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECSSSCEEEEEEEETT
T ss_pred EEcCCCeEEEEEEchh
Confidence 8874 89999998654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-17 Score=182.09 Aligned_cols=246 Identities=11% Similarity=0.016 Sum_probs=167.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++|+|||++++++ ||+|++||+.++++...+.++....... ....+.|.|. ++.
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~Spd---------g~~ 75 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGH-------------SINDYSISPD---------GQF 75 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCS-------------CCCEEEECTT---------SSE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcc-------------cccceEECCC---------CCE
Confidence 456999999999986 8999999999999877776554322111 1112444443 677
Q ss_pred EEEEeCC---------CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecC
Q 006808 89 LVLGTGG---------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRAS 158 (630)
Q Consensus 89 l~~~~~~---------g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~ 158 (630)
|++++.+ +.+.+||+.+++.. .+ ..|...+..++|||||+.|+.+ .++.|++|++.+++..+. ..++
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~ 152 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK 152 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence 8887775 66789999999875 33 4577889999999999999888 468999999988875542 2222
Q ss_pred CCCe-----------------EEEEEccCCCEEEEeC---C-----------------------------------eEEE
Q 006808 159 TKGI-----------------SCMAVSSDGKMLATAA---G-----------------------------------QLKT 183 (630)
Q Consensus 159 ~~~v-----------------~~l~~~p~~~~l~~~~---g-----------------------------------~i~l 183 (630)
...+ ..+.|+|||+.|+.++ + +|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 2222 3589999999998863 1 5888
Q ss_pred EECCC---Cc--eeeEee------cCCCCeEEEEEeeCCcEEEEEeeC---CCeEEEEEcCCCc----cccceeeeeecC
Q 006808 184 FNCSD---HK--KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVK----KQSASCVLAMEH 245 (630)
Q Consensus 184 wd~~~---~~--~~~~~~------~h~~~v~~l~~sp~~~~l~~~~~~---d~~i~vwd~~~~~----~~~~~~~~~~~~ 245 (630)
||+.+ +. ....+. +|...+..++|+|||+.++..... +..|++||+.+++ ......+....+
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 99988 73 223333 377789999999999976655422 2379999998876 110111111223
Q ss_pred Cceee----eeEEecCCccCCCCCEEE-EEec-CC--cEEEEEcCCccc
Q 006808 246 PAVFM----DCRCIDNGGVDDAGLYVL-AISE-TG--VCYIWYGQNIEE 286 (630)
Q Consensus 246 ~~~~~----~~~~~~~~~~~~~~~~l~-s~s~-dg--~i~iwd~~~~~~ 286 (630)
...+. ....|+ |||+.|+ ..+. +| .|++|+..++..
T Consensus 313 ~~~v~~~~~~~p~fs-----pDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 313 TGWVGRFRPSEPHFT-----LDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp SSCSSSSSCCCCEEC-----TTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred CceEccCcCCCceEc-----CCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 32221 134455 9999877 6654 44 578888876654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-16 Score=158.16 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=148.8
Q ss_pred EECCCCCEEEEeeC----CCcEEEEEC--CCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 12 SFSPALDYFAICSG----DARIKIWDT--LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 12 ~fs~dg~~las~s~----dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
+..+...+++.|+. ++.|.+|.+ .+++.......+...+. .++|.+.
T Consensus 8 ~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~------------------~l~~spd--------- 60 (361)
T 3scy_A 8 STTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPS------------------YLIPSAD--------- 60 (361)
T ss_dssp CGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCC------------------SEEECTT---------
T ss_pred hhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCc------------------eEEECCC---------
Confidence 34455556777753 568999865 55654432221222222 3444433
Q ss_pred CcEEEEEeCC----CeEEEEEccC--Cee--eEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEe-
Q 006808 86 SSLLVLGTGG----GDVLALAVSA--GQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKF- 155 (630)
Q Consensus 86 ~~~l~~~~~~----g~v~iwd~~~--~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~- 155 (630)
+++|++++.+ |.|.+|++.. +.. +... ..+...+..+++ +++++++++ .++.|.+|++.....+..+
T Consensus 61 g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 137 (361)
T 3scy_A 61 GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS 137 (361)
T ss_dssp SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS
T ss_pred CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc
Confidence 6778888875 7899998875 443 2222 224456778888 788877766 6889999999754332211
Q ss_pred ---e--c--------CCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce------e------eE-eecCCCCeEEEE
Q 006808 156 ---R--A--------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------M------QK-FSGHPGAVRFMT 206 (630)
Q Consensus 156 ---~--~--------~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~------~------~~-~~~h~~~v~~l~ 206 (630)
. + +...+.+++|+|+|+++++++ +.|++|++..... + .. ...+...+.+++
T Consensus 138 ~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 217 (361)
T 3scy_A 138 DVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLI 217 (361)
T ss_dssp EEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEE
T ss_pred eeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEE
Confidence 1 1 122358899999999776655 7999998875431 1 11 223445678999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC--CcEEEEEcC
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET--GVCYIWYGQ 282 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~ 282 (630)
|+|+|+++++++..++.|.+|++.++....................+.|+ |+|++|++++.+ +.|.+|++.
T Consensus 218 ~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 218 FNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp ECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEEC
T ss_pred EcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEEc
Confidence 99999998888756899999999866432111111111111223456666 999999777664 899999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-16 Score=161.32 Aligned_cols=306 Identities=11% Similarity=0.050 Sum_probs=190.6
Q ss_pred EEEECCCCcEEEEeccccccccc-----ccccccccccccccceeeEEecccccccccccCCcEEEEEeC-CC--eEEEE
Q 006808 30 KIWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG--DVLAL 101 (630)
Q Consensus 30 ~vwd~~~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g--~v~iw 101 (630)
..++..+|.....+..+...... ..|+|+ ++.|+.++. +| .|.+|
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD---------------------------g~~l~~~~~~~g~~~l~~~ 65 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRD---------------------------GSKLLFGGAFDGPWNYYLL 65 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTT---------------------------SCEEEEEECTTSSCEEEEE
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCC---------------------------CCEEEEEEcCCCCceEEEE
Confidence 34577788887777655433322 334433 666777776 66 48899
Q ss_pred EccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEE--EccCCCEEEEe--
Q 006808 102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA--VSSDGKMLATA-- 177 (630)
Q Consensus 102 d~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~--~~p~~~~l~~~-- 177 (630)
|+.+++.. .+..++...+.++.|+|+|+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++..
T Consensus 66 d~~~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~ 144 (388)
T 3pe7_A 66 DLNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEI 144 (388)
T ss_dssp ETTTCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE
T ss_pred eCCCCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccc
Confidence 99988876 44445655555778999999999999999999999999988777776665554444 48999988742
Q ss_pred --------------------C--CeEEEEECCCCceeeEeecCCCCeEEEEEee-CCcEEEEEeeC-----CCeEEEEEc
Q 006808 178 --------------------A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVG-----ERYIALWRT 229 (630)
Q Consensus 178 --------------------~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~~-----d~~i~vwd~ 229 (630)
. +.|++||+.+++.. .+..+...+..+.|+| +|+.|+.++.. ...|.++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 145 RREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp EGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred cCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 1 57999999988644 4445677899999999 99988877632 237888887
Q ss_pred CCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CC----cEEEEEcCCccc--ccccCceeEEe--ecc
Q 006808 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG----VCYIWYGQNIEE--LRNTKATKILS--SSE 300 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg----~i~iwd~~~~~~--~~~~~~~~~~~--~~~ 300 (630)
..+... .+ ........+....|+ |||+.|+..+. ++ .|++||+.+++. +.......... ...
T Consensus 224 ~~~~~~---~l-~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 294 (388)
T 3pe7_A 224 DGTNMR---KV-KTHAEGESCTHEFWV-----PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG 294 (388)
T ss_dssp TSCCCE---ES-CCCCTTEEEEEEEEC-----TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred CCCceE---Ee-eeCCCCcccccceEC-----CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence 765422 11 111222334445566 99998766544 22 399999988863 22222111111 111
Q ss_pred CCCcccccchhhhhhhcccccc--ccCCceeEEEEEcCccCceeeEEeccCC-----------CcEEEeecCCcceeecc
Q 006808 301 DVNSKSQKSATAAIFAAKLQDI--VKPASVHTFVAYGLLLKPSFQKILVNSG-----------EDINLNCSQDGVLLPMS 367 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~--~~~~~~~~~~~~g~~~~~~~~~~~~h~~-----------~v~~~~~s~dg~~l~~s 367 (630)
..++|+++ .|+....++. ....+..+.+..- .......+..|.. .+.+++|||||+.|+++
T Consensus 295 ~~~spdg~----~l~~~~~~~~~~~~~~~~~i~~~d~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~ 368 (388)
T 3pe7_A 295 SLMVGDGS----DAPVDVQDDSGYKIENDPFLYVFNM--KNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT 368 (388)
T ss_dssp SEEEEEEC----CC------------CCCCEEEEEET--TTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred CeEccCCC----cceeEeeeccccccCCCCEEEEEec--cCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence 23677777 5554332110 0001223333321 1123345666665 57889999999988455
Q ss_pred ccceecccccee
Q 006808 368 QSLLKSKRGRYV 379 (630)
Q Consensus 368 ~s~d~~~~~w~~ 379 (630)
+..++...+|.+
T Consensus 369 s~~~g~~~l~~~ 380 (388)
T 3pe7_A 369 SDVHGKPALYLA 380 (388)
T ss_dssp ECTTSSCEEEEE
T ss_pred ecCCCceeEEEE
Confidence 555666666654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-17 Score=167.64 Aligned_cols=199 Identities=11% Similarity=0.053 Sum_probs=141.7
Q ss_pred cccceeEeEECCCCCEEE----EeeCCCcEEEEECCCC--------cEEEEecccccccccccccccccccccccceeeE
Q 006808 4 SNIRDILTSFSPALDYFA----ICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~la----s~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 71 (630)
++| .+++|+|+|++|| +|+.|++|+|||+.++ +.+..+.. ..+| ...+.++
T Consensus 93 ~~v--~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~--------------~~~h-~~~V~~v 155 (434)
T 2oit_A 93 FPI--HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL--------------LKDA-GGMVIDM 155 (434)
T ss_dssp SCE--EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC--------------CCSG-GGSEEEE
T ss_pred Ccc--cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec--------------cCCC-CCceEEE
Confidence 357 5669999999999 7888999999998754 11111110 1133 2367788
Q ss_pred EecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q 006808 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151 (630)
Q Consensus 72 ~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~ 151 (630)
+|+|.. +.+|++++.||.|++||+.++...... .+|...|++++|+|+|++|++|+.||+|++||++ ++.
T Consensus 156 ~~~p~~--------~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~ 225 (434)
T 2oit_A 156 KWNPTV--------PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE 225 (434)
T ss_dssp EECSSC--------TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred EECCCC--------CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence 888764 678999999999999999998765444 3588899999999999999999999999999998 666
Q ss_pred eEEeecCC-------CCeEEEEEccCCCEEEEeC---C------eEEEEECCCCce-----eeEee-------cCCCCeE
Q 006808 152 LGKFRAST-------KGISCMAVSSDGKMLATAA---G------QLKTFNCSDHKK-----MQKFS-------GHPGAVR 203 (630)
Q Consensus 152 ~~~~~~~~-------~~v~~l~~~p~~~~l~~~~---g------~i~lwd~~~~~~-----~~~~~-------~h~~~v~ 203 (630)
...+..+. ..|.+++|++++.++++.+ | .+++|++.+... ...+. +...+..
T Consensus 226 ~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 305 (434)
T 2oit_A 226 KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHY 305 (434)
T ss_dssp EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCE
T ss_pred cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcce
Confidence 66655432 2789999999988876543 2 399999986521 11111 1222323
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.+.+-++.++++++++....|.++..
T Consensus 306 ~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 306 YLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred eeehhccCCEEEEecCCCCceeEEEe
Confidence 34444777777777655555666554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=158.42 Aligned_cols=257 Identities=13% Similarity=0.076 Sum_probs=164.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCC-----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRAST----- 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~----- 159 (630)
+.++++++.++.|.+||+.+++.+..+..+....+..++|+|+|++++ ++..++.|.+||+.+++.+..+....
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 677889999999999999999887666533333678999999998765 55578999999999998887776433
Q ss_pred -CCeEEEEEccCCCEEEEeC--------------CeEEEEECCCCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 160 -KGISCMAVSSDGKMLATAA--------------GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 160 -~~v~~l~~~p~~~~l~~~~--------------g~i~lwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
..+.+++|+|+|+++++++ +.|.+||+.+++. +..+. +...+.+++|+|+|+ +++++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--- 165 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--- 165 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES---
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc---
Confidence 2378899999999998876 7999999988543 33444 344688999999999 55543
Q ss_pred CeEEEEEcCCCccccceeeeeecCC--------------------ce--eeeeEEecCCccCCCC-----------CEEE
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHP--------------------AV--FMDCRCIDNGGVDDAG-----------LYVL 268 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~~~~~~~~~~~-----------~~l~ 268 (630)
+.|.+||+.+++.. ........ .. ......+. +++ .++.
T Consensus 166 ~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 166 PDIYKMDVKTGKYT---VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-----KDDKQDPATADLLYGYLS 237 (349)
T ss_dssp SSEEEECTTTCCEE---EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------------CCCEEEEEEEE
T ss_pred CcEEEEeCCCCcee---ccccccccCCccccCccceeeecCCCcceeEEeeeeeeec-----CCCcCCccccccceeEEE
Confidence 24999999887643 11111110 00 11112221 221 1222
Q ss_pred EEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc-cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEec
Q 006808 269 AISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK-SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347 (630)
Q Consensus 269 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~ 347 (630)
....++.+.+|+.... ......+. ++| +++ .++++ ++.+..++ .........+.
T Consensus 238 ~~~~~~~~~~~~~~~~------~~~~~~~~----~sp~dg~----~l~~~--~~~v~~~d--------~~~~~~~~~~~- 292 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADL------TELYFTGL----RSPKDPN----QIYGV--LNRLAKYD--------LKQRKLIKAAN- 292 (349)
T ss_dssp EETTTCCEEEEEEEEC------SSCEEEEE----ECSSCTT----EEEEE--ESEEEEEE--------TTTTEEEEEEE-
T ss_pred EeccCCcEEecccccC------CCcceeeE----ecCCCCC----EEEEE--cCeEEEEE--------CccCeEEEEEc-
Confidence 3344677777776321 11111122 456 655 55555 33322221 11222222332
Q ss_pred cCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 348 h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
....+.+++|+|||.+| ++++.++.+++|+...
T Consensus 293 ~~~~~~~~~~s~dg~~l-~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 293 LDHTYYCVAFDKKGDKL-YLGGTFNDLAVFNPDT 325 (349)
T ss_dssp CSSCCCEEEECSSSSCE-EEESBSSEEEEEETTT
T ss_pred CCCCccceEECCCCCEE-EEecCCCeEEEEeccc
Confidence 23346789999999988 5567789999999864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=154.89 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=129.3
Q ss_pred CcEEEEEeCCCeEEEEEcc-CCeeeEEccCCCCCCEEEEEEecCCCE--EEEEe-------------CCCcEEEEeCC-C
Q 006808 86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSC--IYSAG-------------ADGMVCEIDPL-T 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~-~~~~~~~~~~~h~~~v~~~~~s~~g~~--l~s~~-------------~dg~v~iwd~~-~ 148 (630)
+.+|++++.+ .|.+|++. +++..........+.+.+++|+|+|++ +++++ .++.+.+|++. .
T Consensus 51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~ 129 (365)
T 1jof_A 51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET 129 (365)
T ss_dssp SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence 6778888877 99999997 776543221101123566899999994 44553 68999999997 4
Q ss_pred CceeEEee----cCCCCeEEEEEccCCCEEEEeC---CeEEEEECC-CCcee--eEee--cCCCCeEEEEEeeCCcEEEE
Q 006808 149 GSLLGKFR----ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKM--QKFS--GHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 149 ~~~~~~~~----~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~-~~~~~--~~~~--~h~~~v~~l~~sp~~~~l~~ 216 (630)
++....+. .+...+.+++|+|+|+++++++ +.|++|++. +++.. ..+. .|...+..++|+|+|+++++
T Consensus 130 g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v 209 (365)
T 1jof_A 130 GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA 209 (365)
T ss_dssp CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence 66554443 2455789999999999888764 699999998 67643 3333 24567899999999999988
Q ss_pred EeeCCCeEEEEEcCC--Ccccc-ceeeeeecCC--c-e-------eeeeEE-ecCCccCCCCCEEEEEecCC------cE
Q 006808 217 SAVGERYIALWRTDG--VKKQS-ASCVLAMEHP--A-V-------FMDCRC-IDNGGVDDAGLYVLAISETG------VC 276 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~--~~~~~-~~~~~~~~~~--~-~-------~~~~~~-~~~~~~~~~~~~l~s~s~dg------~i 276 (630)
++..++.|.+|++.. ++... ...+..+... . . ....+. ++ |||++|++++.+. .|
T Consensus 210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEE
T ss_pred EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeE
Confidence 875578999998763 33210 0011111111 1 1 244555 76 9999988776532 79
Q ss_pred EEEEcC
Q 006808 277 YIWYGQ 282 (630)
Q Consensus 277 ~iwd~~ 282 (630)
.+|++.
T Consensus 285 ~v~~~~ 290 (365)
T 1jof_A 285 AGFKLR 290 (365)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999985
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-14 Score=142.29 Aligned_cols=241 Identities=15% Similarity=0.190 Sum_probs=164.0
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++++|+|+++++.+.++.|.+||.. +..+..+...... .++. .....+++.+.+ +.+
T Consensus 33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~-----------~~~~-~~p~~i~~~~~~--------g~l 91 (286)
T 1q7f_A 33 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------DSQL-LYPNRVAVVRNS--------GDI 91 (286)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------TTCB-SSEEEEEEETTT--------TEE
T ss_pred ceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC-----------cccc-cCceEEEEEcCC--------CeE
Confidence 455999999988888889999999986 6666555321100 0111 123455553222 444
Q ss_pred EEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee--cCCCCeEEE
Q 006808 89 LVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCM 165 (630)
Q Consensus 89 l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l 165 (630)
+++... ++.|.+|+ .+++.+..+...+...+.+++++|+|+.+++...++.|.+||. .++.+..+. .+...+.++
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEE
Confidence 444433 78899999 5566665554445567999999999998777778899999995 466666664 234568999
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCC-eEEEEEcCCCccccceee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCV 240 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~-~i~vwd~~~~~~~~~~~~ 240 (630)
+++|+|+++++.. +.|++||. +++.+..+..+ ...+..++++|+|+.+++.. .++ .|.+|+..... . ..
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~g~~-~---~~ 243 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQDGQL-I---SA 243 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTTSCE-E---EE
T ss_pred EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCCCCE-E---EE
Confidence 9999998777765 79999997 55566666533 35789999999998777665 465 99999964332 1 12
Q ss_pred eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+...........+++. |+|.++++ +.++.|++|+....
T Consensus 244 ~~~~~~~~~~~~i~~~-----~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 244 LESKVKHAQCFDVALM-----DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEESSCCSCEEEEEEE-----TTTEEEEE-ETTTEEEEEECSCC
T ss_pred EcccCCCCcceeEEEC-----CCCcEEEE-CCCCeEEEEEcccc
Confidence 2222222223445565 88887666 67899999997554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-16 Score=158.37 Aligned_cols=238 Identities=9% Similarity=0.038 Sum_probs=158.9
Q ss_pred eEECCCCCEEEEeeC-CCc--EEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 11 TSFSPALDYFAICSG-DAR--IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 11 ~~fs~dg~~las~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.+|||||++||+++. +|. |.+||+.+++......++........|+|+ +.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---------------------------g~ 93 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---------------------------DD 93 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---------------------------SS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---------------------------CC
Confidence 489999999999987 664 888899988876654433332223334443 77
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEE--EecCCCEEEEE----------------------eCCCcEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS--FATHGSCIYSA----------------------GADGMVCE 143 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~--~s~~g~~l~s~----------------------~~dg~v~i 143 (630)
.|+.++.++.|++||+.+++..... ..+...+.... ++|++..++.. +.+..|.+
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 8999999999999999998865333 23444454444 48999987743 23468999
Q ss_pred EeCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEeC-C-------eEEEEECCCCceeeEeecCC--CCeEEEEEeeCCc
Q 006808 144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA-G-------QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGK 212 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~-g-------~i~lwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~ 212 (630)
||+.+++.... ..+...+..++|+| +|+.|+.+. + .|.++|+..+.. ..+..+. ..+..+.|+|+|+
T Consensus 173 ~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCC
Confidence 99998875444 44566789999999 999887765 2 688888766543 3444444 3578899999999
Q ss_pred EEEEEeeCCC----eEEEEEcCCCccccceeeeeecCCcee---eeeEEecCCccCCCCCEEEEE---------ecCCcE
Q 006808 213 YVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAI---------SETGVC 276 (630)
Q Consensus 213 ~l~~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~---------s~dg~i 276 (630)
.|+..+..++ .|++||+.+++.. .+......... .....|+ |||++|+.. ..+..|
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENR---QLTSMPACSHLMSNYDGSLMV-----GDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEE---EEEEECCEEEEEECTTSSEEE-----EEECCC------------CCCCEE
T ss_pred EEEEEecCCCCCcceEEEEecCCCceE---EEEcCCCceeeeecCCCCeEc-----cCCCcceeEeeeccccccCCCCEE
Confidence 8866553322 3999999987643 22222210000 1111344 899888754 445689
Q ss_pred EEEEcCCccc
Q 006808 277 YIWYGQNIEE 286 (630)
Q Consensus 277 ~iwd~~~~~~ 286 (630)
++||+.+++.
T Consensus 323 ~~~d~~~~~~ 332 (388)
T 3pe7_A 323 YVFNMKNGTQ 332 (388)
T ss_dssp EEEETTTTEE
T ss_pred EEEeccCCce
Confidence 9999987654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=174.95 Aligned_cols=282 Identities=13% Similarity=0.060 Sum_probs=177.6
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCC---CEEEEEEecCCCEEEEEeC---------
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAGA--------- 137 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~---~v~~~~~s~~g~~l~s~~~--------- 137 (630)
.+.|.+. +. ++..+.+|.|++||+.+++....+ .+|.. .+.+++|||||++|++++.
T Consensus 20 ~~~~s~d---------g~-~~~~~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 20 FPNWISG---------QE-YLHQSADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCEESSS---------SE-EEEECTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccEECCC---------Ce-EEEEcCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 4566664 43 455567999999999999876433 33332 4899999999999988876
Q ss_pred CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEe-ecCCCCe-------------
Q 006808 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAV------------- 202 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~-~~h~~~v------------- 202 (630)
++.|++||+.+++.+.... ....+..++|+|||+.|+++. +.|++|++.+++..... .++...|
T Consensus 89 ~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred ceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 7899999999887631111 124688999999999999888 89999999888764322 2332222
Q ss_pred ----EEEEEeeCCcEEEEEeeCCC---------------------------------eEEEEEcCCCccccceee---ee
Q 006808 203 ----RFMTFSDNGKYVLSSAVGER---------------------------------YIALWRTDGVKKQSASCV---LA 242 (630)
Q Consensus 203 ----~~l~~sp~~~~l~~~~~~d~---------------------------------~i~vwd~~~~~~~~~~~~---~~ 242 (630)
.+++|||||++|++++..++ .|++||+.+++......+ ..
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 48999999999999874221 788999988753100000 11
Q ss_pred ecCCceeeeeEEecCCccCCCCCEEEEEecCC----cEEEEE----cCCcccccccC----ceeEEee----ccCCCccc
Q 006808 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETG----VCYIWY----GQNIEELRNTK----ATKILSS----SEDVNSKS 306 (630)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg----~i~iwd----~~~~~~~~~~~----~~~~~~~----~~~~~~~~ 306 (630)
+..+...+....|+ ||++++++....+ .|.+|| ..+++...... .....+. ....|+|+
T Consensus 248 ~~~~~~~~~~~~~S-----pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 248 IASSDYYFSWLTWV-----TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp HHTSCEEEEEEEES-----SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCCCcceEEEeEEe-----CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 12234455566676 9987777654332 488899 77776543321 1111011 02236777
Q ss_pred ccchhhhhhh--ccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccc----eeccccceec
Q 006808 307 QKSATAAIFA--AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL----LKSKRGRYVQ 380 (630)
Q Consensus 307 ~~~~~~~i~~--~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~----d~~~~~w~~~ 380 (630)
++ .++. +..++ ..+++... . .......+..+...+..+.++ ||..|.+++.. ++..++|.+.
T Consensus 323 g~----~l~~~~~~~~g-----~~~l~~~~-~-~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 323 AI----SYYKIFSDKDG-----YKHIHYIK-D-TVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp SS----CEEEEEECTTS-----CEEEEEES-S-CSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CC----eEEEEEEccCC-----ceEEEEEE-C-CCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 76 4443 22333 22333322 1 111134555566677888888 88777455554 4778888764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=145.21 Aligned_cols=242 Identities=9% Similarity=0.076 Sum_probs=166.6
Q ss_pred cccceeEeEECCCCCEEEEeeCC------------------------CcEEEEECCCCcEEEEecccccccccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGD------------------------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRL 59 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~ 59 (630)
+.| ..++|+|+|+++++.+.+ ++|.+||..+++.+..+...
T Consensus 24 ~~v--~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 88 (329)
T 3fvz_A 24 GQV--SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN------------- 88 (329)
T ss_dssp SCE--EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-------------
T ss_pred CCc--eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-------------
Confidence 356 445999999999888777 47999999889887654311
Q ss_pred cccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe-eeEEcc--------CCCCCCEEEEEEec-CC
Q 006808 60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLS--------DCHPGGVSAISFAT-HG 129 (630)
Q Consensus 60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~-~~~~~~--------~~h~~~v~~~~~s~-~g 129 (630)
+ -.....+++.+. +.++++...++.|++|+..... .+..+. .++-..+.+++|+| +|
T Consensus 89 ---~-~~~p~gia~d~~---------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 89 ---L-FYLPHGLSIDTD---------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp ---T-CSSEEEEEECTT---------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred ---c-cCCceEEEECCC---------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 1 012234444432 6677777788999999986552 333332 24455799999999 78
Q ss_pred CEEEEEe-CCCcEEEEeCCCCceeEEeecCC----------CCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEe
Q 006808 130 SCIYSAG-ADGMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF 195 (630)
Q Consensus 130 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~ 195 (630)
..+++.+ .++.|++|| .+++.+..+.... .....++++|+ +.++++.. +.|++|+..+++.+..+
T Consensus 156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 8777776 689999999 5677777764322 23789999998 66555554 79999999889888887
Q ss_pred e--cCCCCeEEEEEeeCCcEEEEEe------eCCCeEEEEEcCCCccccceeeee-ecCCceeeeeEEecCCccCCCCCE
Q 006808 196 S--GHPGAVRFMTFSDNGKYVLSSA------VGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLY 266 (630)
Q Consensus 196 ~--~h~~~v~~l~~sp~~~~l~~~~------~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
. .+...+.+++|+| +..+.+.+ ..+..|++|+..+++.. ..+. ..........++++ |+|..
T Consensus 235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~---~~~~~~~~~~~~p~~ia~~-----~dG~l 305 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII---DVFKPVRKHFDMPHDIVAS-----EDGTV 305 (329)
T ss_dssp CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE---EEECCSSSCCSSEEEEEEC-----TTSEE
T ss_pred eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE---EEEcCCCCccCCeeEEEEC-----CCCCE
Confidence 4 4566788999999 43333322 12458999999887643 1111 01222234455666 89988
Q ss_pred EEEEecCCcEEEEEcCC
Q 006808 267 VLAISETGVCYIWYGQN 283 (630)
Q Consensus 267 l~s~s~dg~i~iwd~~~ 283 (630)
+++...++.|++|++..
T Consensus 306 yvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEESSSCCEEEEEEEE
T ss_pred EEEECCCCEEEEEeCCc
Confidence 88888899999999753
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=157.12 Aligned_cols=233 Identities=9% Similarity=0.003 Sum_probs=151.7
Q ss_pred EeEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 10 LTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 10 ~~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
.++|||||++||.++.. ..|.+||+.+++......+.. .. .....|.|. +
T Consensus 40 ~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~-~~-----------------~~~~~~spd---------g 92 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG-DN-----------------TFGGFISTD---------E 92 (396)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC-BC-----------------TTTCEECTT---------S
T ss_pred cCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC-Cc-----------------cccceECCC---------C
Confidence 34899999998877643 468888998887544322111 11 111334433 7
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEE-------------------EEEecCCCEEEEE-----eCCCcEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-------------------ISFATHGSCIYSA-----GADGMVC 142 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~-------------------~~~s~~g~~l~s~-----~~dg~v~ 142 (630)
+.|+.++.++.|++||+.+++..... ..+...... +.|+|+++.++.+ ..+..|+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI 171 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence 78889999999999999988764332 223332222 3456677665543 3566899
Q ss_pred EEeCCCCceeEEeecCCCCeEEEEEcc-CCCEEEEeC--------CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCC
Q 006808 143 EIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--------GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNG 211 (630)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~--------g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~ 211 (630)
+||+.+++..... .+...+..+.|+| ++..|+.++ ..|++||+..++.. .+..+ ...+..+.|+|+|
T Consensus 172 ~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 172 KVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTS
T ss_pred EEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCC
Confidence 9999988765554 3566789999999 788776654 26888998765433 33323 2357889999999
Q ss_pred cEEEEEeeCC----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCC-CCCEEEEEe---------------
Q 006808 212 KYVLSSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS--------------- 271 (630)
Q Consensus 212 ~~l~~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s--------------- 271 (630)
++|+.++..+ +.|++||+.+++.. .+... +.. . ..|+ | +|+++++++
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~--~~~--~-~~~s-----~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENE---EVMVM--PPC--S-HLMS-----NFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEE---EEEEC--CSE--E-EEEE-----CSSSSEEEEEECCC----------CC
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeE---EeeeC--CCC--C-CCcc-----CCCCceEEEecCCcceeecccccccc
Confidence 9887775322 45999999877533 22221 121 2 4455 7 999888765
Q ss_pred -cCCcEEEEEcCCcc
Q 006808 272 -ETGVCYIWYGQNIE 285 (630)
Q Consensus 272 -~dg~i~iwd~~~~~ 285 (630)
.++.|++||+.+++
T Consensus 317 ~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKS 331 (396)
T ss_dssp CCCCEEEEEETTTTB
T ss_pred CCCCcEEEEecccCc
Confidence 24679999987664
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-16 Score=167.12 Aligned_cols=265 Identities=10% Similarity=-0.010 Sum_probs=170.6
Q ss_pred cceeeEEecccccccccccCCcEEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcE
Q 006808 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMV 141 (630)
Q Consensus 66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v 141 (630)
..+.++.+.+. ++.|++++. +|++.||++.+++.. .+...+...+.+++|+|+ +.+++++. +...
T Consensus 22 ~~~~~~~~~~D---------G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~ 90 (582)
T 3o4h_A 22 VEKYSLQGVVD---------GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH 90 (582)
T ss_dssp SCEEEEEEEET---------TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred cchheeecCCC---------CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence 34556666554 677887776 999999999777654 454434468999999999 77777765 4545
Q ss_pred EEEeCCC---CceeEEeecCCCCeEEEEEccCCCE--EEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 142 CEIDPLT---GSLLGKFRASTKGISCMAVSSDGKM--LATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 142 ~iwd~~~---~~~~~~~~~~~~~v~~l~~~p~~~~--l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
.+|.+.. +... .+... ..+...+|+|+|+. +++++ +.+.+||+.+++...... +.. .+++|+|||++++
T Consensus 91 ~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 91 ALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp EEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEE
T ss_pred EEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEE
Confidence 6654432 3222 33322 23456788888864 44444 667799999887654444 333 7899999999999
Q ss_pred EEeeCC----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC--cEEEEEcCCcccccc
Q 006808 216 SSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRN 289 (630)
Q Consensus 216 ~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~ 289 (630)
+++. + +.|++||+.+++.. .+...........|+ |||++|+++..+| .|++||+.+++.. .
T Consensus 166 ~~~~-~~~~~~~i~~~d~~~g~~~------~l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 166 GLGF-FGGGRVSLFTSNLSSGGLR------VFDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EEEE-EETTEEEEEEEETTTCCCE------EECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred EEEE-cCCCCeEEEEEcCCCCCce------EeecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence 8774 5 67999999887633 222333344566676 9999999888888 8999999887654 2
Q ss_pred cCceeEEeeccCC--------CcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCc
Q 006808 290 TKATKILSSSEDV--------NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG 361 (630)
Q Consensus 290 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (630)
.......+. ... ++|++. .+++++.++.++++. . |.. .. .+.+.+.+++|+ ||
T Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~spdg~----~~~~~~~~g~~~l~~-----~-g~~----~~---~~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 233 LELPSKDFS-SYRPTAITWLGYLPDGR----LAVVARREGRSAVFI-----D-GER----VE---APQGNHGRVVLW-RG 293 (582)
T ss_dssp CCCSCSHHH-HHCCSEEEEEEECTTSC----EEEEEEETTEEEEEE-----T-TEE----EC---CCSSEEEEEEEE-TT
T ss_pred ccCCCcChh-hhhhccccceeEcCCCc----EEEEEEcCCcEEEEE-----E-CCe----ec---cCCCceEEEEec-CC
Confidence 211111111 112 567764 677777776544432 2 211 11 344668899999 99
Q ss_pred ceeeccccceec---ccccee
Q 006808 362 VLLPMSQSLLKS---KRGRYV 379 (630)
Q Consensus 362 ~~l~~s~s~d~~---~~~w~~ 379 (630)
+++ ++++.+.+ +.+|+.
T Consensus 294 ~~l-~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 294 KLV-TSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEE-EEEEETTEEEEEEEETT
T ss_pred EEE-EEEcCCCCCCeEEEEcC
Confidence 988 66665533 444444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-14 Score=156.14 Aligned_cols=249 Identities=9% Similarity=0.040 Sum_probs=159.1
Q ss_pred cccceeEeEECCCCCEEEEe--eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecc-ccccc
Q 006808 4 SNIRDILTSFSPALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKK 80 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~-~~~~~ 80 (630)
..|+ .++|++++-+++.. +.+++..||....+.....+..+...+..... ......+.|.. ++
T Consensus 24 ~~~~--~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~SPD--- 89 (662)
T 3azo_A 24 GRPA--CVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVF---------EYSGFPWAGVPRPA--- 89 (662)
T ss_dssp SCCE--EEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGG---------GTCCCCEEEECCSS---
T ss_pred Cccc--eeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCcccccccc---------ccCCccceeeeecC---
Confidence 3453 44899887777776 55888999986545545555544322221000 00111334541 33
Q ss_pred ccccCCcE-EEEEeC-CCeEEEEEcc--C-CeeeEEccCC----CCCCEEEEEEecCCCEEEEEeCC----------CcE
Q 006808 81 KRKLGSSL-LVLGTG-GGDVLALAVS--A-GQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD----------GMV 141 (630)
Q Consensus 81 ~~~~~~~~-l~~~~~-~g~v~iwd~~--~-~~~~~~~~~~----h~~~v~~~~~s~~g~~l~s~~~d----------g~v 141 (630)
++. |+.++. +..|.+|++. + +... .+... |...+.+++|+|||+.|++++.+ ..|
T Consensus 90 -----g~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 90 -----GGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL 163 (662)
T ss_dssp -----SSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred -----CCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence 555 554443 5667777776 3 4432 33321 56778999999999999988876 589
Q ss_pred EEEeCCC------CceeEEee-cCCCCeEEEEEccCCCEEEEeC----------CeEEEEECC-CC---ceeeEeecCCC
Q 006808 142 CEIDPLT------GSLLGKFR-ASTKGISCMAVSSDGKMLATAA----------GQLKTFNCS-DH---KKMQKFSGHPG 200 (630)
Q Consensus 142 ~iwd~~~------~~~~~~~~-~~~~~v~~l~~~p~~~~l~~~~----------g~i~lwd~~-~~---~~~~~~~~h~~ 200 (630)
++||+.+ ++. ..+. .+...+..++|+|||++|+.++ ..|++||+. ++ +......+|..
T Consensus 164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp EEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred EEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 9999987 544 4444 5556788899999999998765 279999998 56 44444455678
Q ss_pred CeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCCcee--------eeeEEecCCccCCCCCEEEEE
Q 006808 201 AVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVF--------MDCRCIDNGGVDDAGLYVLAI 270 (630)
Q Consensus 201 ~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~s~ 270 (630)
.+..+.|+|||++++++. .++ .|++|++.+++.. .+. .+.... .....++ |++.+++++
T Consensus 243 ~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~---~l~--~~~~~~~~p~w~~~~~~~~~~-----~~~~~~~~~ 311 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT---QLC--RREEEFAGPLWTPGMRWFAPL-----ANGLIAVVH 311 (662)
T ss_dssp CEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE---ESS--CCSSBSSCCCCSTTCCSEEEC-----TTSCEEEEE
T ss_pred eEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee---ecc--cccccccCccccccCceEeEe-----CCCEEEEEE
Confidence 899999999999555554 677 5666666555422 111 111111 2334454 789999999
Q ss_pred ecCCcEEEE--EcCCcc
Q 006808 271 SETGVCYIW--YGQNIE 285 (630)
Q Consensus 271 s~dg~i~iw--d~~~~~ 285 (630)
+. |.++|| |..+++
T Consensus 312 ~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 312 GK-GAAVLGILDPESGE 327 (662)
T ss_dssp BS-SSCEEEEEETTTTE
T ss_pred Ec-CccEEEEEECCCCc
Confidence 88 999999 555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-14 Score=140.84 Aligned_cols=241 Identities=12% Similarity=0.099 Sum_probs=161.9
Q ss_pred CCCcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 1 ~~s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
|.+..|. +++|+|++..++..+.++.++.| .+.....+..+.. ...+++|.+.
T Consensus 3 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------------------~~~~~~~~~~---- 55 (333)
T 2dg1_A 3 MSQQDLP--TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGL------------------QLEGLNFDRQ---- 55 (333)
T ss_dssp ---CCCC--BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCC------------------CEEEEEECTT----
T ss_pred ccccccc--eeeecCCccceeEEeecccCccc---ccceeEEEeccCc------------------cccCcEECCC----
Confidence 3566774 44999999888888888999999 3444444432221 2245566532
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC----CcEEEEeCCCCceeEEee
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----g~v~iwd~~~~~~~~~~~ 156 (630)
+.+++++..++.|.+||+.+++..... ..+...+.+++|+|+|+++++...+ +.|.+||..+++....+.
T Consensus 56 -----g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 56 -----GQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp -----SCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred -----CCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 666677888899999999988765332 2356789999999999887777666 689999998776543333
Q ss_pred --cCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 157 --ASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 157 --~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.....+..++++|+|+++++.. +.|+.|+..+++.. .+..+...+..++|+|++++++++...++.|.+
T Consensus 130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 2345789999999998888765 35666666555433 333334457899999999877766555789999
Q ss_pred EEcCC-Cccccc---eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 227 WRTDG-VKKQSA---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 227 wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|++.+ +..... ........ ......+++. ++|.++++...++.|.+||.
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d-----~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCID-----SDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEB-----TTCCEEEEEETTTEEEEECT
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEEC-----CCCCEEEEEcCCCEEEEECC
Confidence 99964 221100 00111111 1234556665 88888877777889999987
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-13 Score=145.40 Aligned_cols=233 Identities=9% Similarity=-0.009 Sum_probs=164.0
Q ss_pred ECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE
Q 006808 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~ 92 (630)
.+|.+.++++...+++|.++|..+++.+..+.... .+..+.++++ +++++++
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpD---------------------------Gr~lyv~ 214 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVI 214 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCC---------------------------CCEEEEE
Confidence 34444566677779999999999999988775322 1223333333 7889999
Q ss_pred eCCCeEEEEEcc--CCeeeEEccCCCCCCEEEEEEe----cCCCEEEEEe-CCCcEEEEeCCCCceeEEeecC-------
Q 006808 93 TGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFA----THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------- 158 (630)
Q Consensus 93 ~~~g~v~iwd~~--~~~~~~~~~~~h~~~v~~~~~s----~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------- 158 (630)
+.++.|.+||+. +++.+.++..+ .....++|+ |+|+++++++ .++.|.++|..+.+.+..+...
T Consensus 215 ~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~ 292 (567)
T 1qks_A 215 GRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ 292 (567)
T ss_dssp ETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred cCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence 999999999996 77777666543 357899999 6999988776 4589999999999988876532
Q ss_pred ----CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 159 ----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 159 ----~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
...+..+.+++++..+++.. |.|.++|..+.+.+. .+. .......+.|+|+|+++++++..++.|.++|+
T Consensus 293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 12678888999877655543 899999987764322 222 33456788999999999888867889999999
Q ss_pred CCCccccceee-eeecCCceeeeeEEecCCccCCCCCEEE-EEe-cCCcEEEEEcCC
Q 006808 230 DGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVL-AIS-ETGVCYIWYGQN 283 (630)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~s-~dg~i~iwd~~~ 283 (630)
.+++......+ ....|+..... ++. |++..+. ++. .++.|.++|..+
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~--~~~-----p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGAN--FVH-----PTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCcEEEEEeccCcCCCCcccee--eEC-----CCCCcEEEeCCCCCCeEEEecCCC
Confidence 98875421111 12234332222 244 7755554 443 468999999887
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=4.5e-14 Score=143.14 Aligned_cols=293 Identities=10% Similarity=0.025 Sum_probs=182.9
Q ss_pred CCCCEEEEee------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 15 PALDYFAICS------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 15 ~dg~~las~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++++++++.. .|+.|.+||..+++.+..+.....+ .+.++|+ +++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd---------------------------g~~ 63 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND---------------------------GKK 63 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTT---------------------------SSE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCC---------------------------CCE
Confidence 3667666553 3789999999999988777643222 3344443 677
Q ss_pred EEEEeC----------CCeEEEEEccCCeeeEEccCC-----CCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCce
Q 006808 89 LVLGTG----------GGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL 151 (630)
Q Consensus 89 l~~~~~----------~g~v~iwd~~~~~~~~~~~~~-----h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~ 151 (630)
++++.. ++.|.+||+.+++.+.++... +......++|+|+|++++++.. ++.|.+||+.+++.
T Consensus 64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY 143 (361)
T ss_dssp EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence 888763 566999999998877665321 2245678999999999998864 57999999999988
Q ss_pred eEE-eecCCCCeEEEEEccCC-CEEEEeC--CeEEEEECCC-Cceee------EeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 152 LGK-FRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD-HKKMQ------KFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 152 ~~~-~~~~~~~v~~l~~~p~~-~~l~~~~--g~i~lwd~~~-~~~~~------~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
+.. +.... ...+.+.|++ ..+++.+ |.+.+|+... ++... .+..+..++ .+.++|++..++..+ .
T Consensus 144 ~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~ 219 (361)
T 2oiz_A 144 VEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-Y 219 (361)
T ss_dssp EEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-T
T ss_pred EEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-C
Confidence 877 55322 2335677765 3444333 8888888765 54431 122222232 344578887777776 5
Q ss_pred CCeEEEEEcCCCccccceeeeeec-----CCc---eeeeeEEecCCccCCCCCEEEEEec-----------CCcEEEEEc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAME-----HPA---VFMDCRCIDNGGVDDAGLYVLAISE-----------TGVCYIWYG 281 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~l~s~s~-----------dg~i~iwd~ 281 (630)
++.+.++|+........ ...... ... .-...+.++ |++.+++++.. .+.|.+||+
T Consensus 220 ~~~v~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 220 YGNVYSADFSGDEVKVD-GPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp TSEEEEEECSSSSCEEE-EEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred CCeEEEEEecCCCceec-ccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 88999999876542200 000000 000 001123455 88888777654 347999999
Q ss_pred CCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccC--ceeeEEeccCCCcEEEeecC
Q 006808 282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK--PSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~--~~~~~~~~h~~~v~~~~~s~ 359 (630)
.+++.+....... .....++|+++ .+++++. +.+.++ ..... ..+..+..+-..-..++++|
T Consensus 294 ~t~~~v~~i~~~~---p~~ia~spdg~----~l~v~n~-~~v~v~--------D~~t~~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 294 KTKQRVARIPGRD---ALSMTIDQQRN----LMLTLDG-GNVNVY--------DISQPEPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp TTTEEEEEEECTT---CCEEEEETTTT----EEEEECS-SCEEEE--------ECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred CCCcEEEEEecCC---eeEEEECCCCC----EEEEeCC-CeEEEE--------ECCCCcceeeEEeccCCCCcEEEEecC
Confidence 9998876654333 22233688887 7776664 433332 22223 44445444555567899999
Q ss_pred Ccc
Q 006808 360 DGV 362 (630)
Q Consensus 360 dg~ 362 (630)
||.
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 986
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-14 Score=158.18 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=134.2
Q ss_pred eEECCCCCEEEEeeCC---------CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 11 TSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 11 ~~fs~dg~~las~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+|||||++||+++.+ +.+.+||+.+++... +..+... .....|+|.
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~------------------~~~~~~SPd----- 122 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNN------------------TQWVTWSPV----- 122 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTT------------------EEEEEECSS-----
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCc------------------ceeeEECCC-----
Confidence 4889999999998876 566799999987543 3333332 334455544
Q ss_pred cccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCE-----------------EEEEEecCCCEEEEEeCCC-----
Q 006808 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGADG----- 139 (630)
Q Consensus 82 ~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~g~~l~s~~~dg----- 139 (630)
++.|+.+ .++.|++|++.++........++...+ .++.|||||+.|+.++.|.
T Consensus 123 ----G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 123 ----GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL 197 (740)
T ss_dssp ----TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred ----CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence 6667776 468999999998876533333443333 3589999999988875321
Q ss_pred -------------------------------cEEEEeCCC---Cc--eeEEee------cCCCCeEEEEEccCCCEEEEe
Q 006808 140 -------------------------------MVCEIDPLT---GS--LLGKFR------ASTKGISCMAVSSDGKMLATA 177 (630)
Q Consensus 140 -------------------------------~v~iwd~~~---~~--~~~~~~------~~~~~v~~l~~~p~~~~l~~~ 177 (630)
.|++||+.+ ++ ....+. ++...+..++|+|||+.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 488899988 73 222333 266678999999999976655
Q ss_pred C------CeEEEEECCCCc----e--eeEe--ecCCCCeE-----EEEEeeCCcEEE-EEeeCCC--eEEEEEcCCCc
Q 006808 178 A------GQLKTFNCSDHK----K--MQKF--SGHPGAVR-----FMTFSDNGKYVL-SSAVGER--YIALWRTDGVK 233 (630)
Q Consensus 178 ~------g~i~lwd~~~~~----~--~~~~--~~h~~~v~-----~l~~sp~~~~l~-~~~~~d~--~i~vwd~~~~~ 233 (630)
. ..|++||+.+++ + +..+ .+|...+. .+.|+|||+.++ ..+..+| .|++|++.++.
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 3 379999999887 2 2222 45665554 789999999877 5553444 68888888765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-13 Score=133.28 Aligned_cols=222 Identities=11% Similarity=0.035 Sum_probs=150.7
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc-eeEEee---------cCCCCeEEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFR---------ASTKGISCM 165 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~-~~~~~~---------~~~~~v~~l 165 (630)
+.|.+||..+++....+..++-..+.+++++|+|+++++...++.|++||..... .+..+. .+-.....+
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i 148 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV 148 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence 4799999999988766655566689999999999988888889999999975432 455552 333468899
Q ss_pred EEcc-CCCEEEEeC---CeEEEEECCCCceeeEeecC----------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 166 AVSS-DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 166 ~~~p-~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h----------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+++| ++.++++.+ +.|++|+ .+++.+..+... -.....++++|++..++++...++.|++|+..+
T Consensus 149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence 9999 888888873 7999999 567777666422 234789999999445555555788999999986
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEE-------EecCCcEEEEEcCCcccccccCceeEEeeccCCCc
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA-------ISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS 304 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 304 (630)
++.. ..+...........+.+. | +..+++ ...++.|++|+..+++.+....+
T Consensus 228 G~~~---~~~~~~~~~~~~~~~~~~-----p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------ 286 (329)
T 3fvz_A 228 KEFV---REIKHASFGRNVFAISYI-----P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------ 286 (329)
T ss_dssp CCEE---EEECCTTTTTCEEEEEEE-----T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------
T ss_pred CcEE---EEEeccccCCCcceeeec-----C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------
Confidence 6533 122112222223344454 6 333332 23344788888766654322110
Q ss_pred ccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
...+......++++|||.++ ++.+.++.+++|++.
T Consensus 287 ----------------------------------------~~~~~~~p~~ia~~~dG~ly-vad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 287 ----------------------------------------VRKHFDMPHDIVASEDGTVY-IGDAHTNTVWKFTLT 321 (329)
T ss_dssp ----------------------------------------SSSCCSSEEEEEECTTSEEE-EEESSSCCEEEEEEE
T ss_pred ----------------------------------------CCCccCCeeEEEECCCCCEE-EEECCCCEEEEEeCC
Confidence 00233456789999999777 888888999999874
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-12 Score=145.89 Aligned_cols=237 Identities=12% Similarity=0.068 Sum_probs=157.1
Q ss_pred eEeEECCCCCEEEEeeCCC-----cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGDA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..++|||||++||.++.++ +|++||+.+|+......... .+..+.|.+.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-------------------~~~~~~wspD------- 181 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-------------------KFSCMAWTHD------- 181 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-------------------CSCCEEECTT-------
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-------------------ccceEEEEeC-------
Confidence 3459999999999876533 89999999998765322110 1234566654
Q ss_pred cCCcEEEEEeCCCe----------------EEEEEccCCeee--EEc-cCCCCCCEEEEEEecCCCEEEEEeC-----CC
Q 006808 84 LGSSLLVLGTGGGD----------------VLALAVSAGQLK--WRL-SDCHPGGVSAISFATHGSCIYSAGA-----DG 139 (630)
Q Consensus 84 ~~~~~l~~~~~~g~----------------v~iwd~~~~~~~--~~~-~~~h~~~v~~~~~s~~g~~l~s~~~-----dg 139 (630)
++.|+.++.++. |++|++.++... ..+ ...|...+.++.|+|+|++|+.++. +.
T Consensus 182 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 --GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp --SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred --CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 666777776654 999999887621 111 1235566889999999999887664 56
Q ss_pred cEEEEeCCC------Cc-eeEEeecCCCCeEEEEEccCCCEEEEeC------CeEEEEECCCCc--eeeEeecCCC--Ce
Q 006808 140 MVCEIDPLT------GS-LLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK--KMQKFSGHPG--AV 202 (630)
Q Consensus 140 ~v~iwd~~~------~~-~~~~~~~~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~--~~~~~~~h~~--~v 202 (630)
.|++||+.+ +. ....+..+...+.. .|+|+|..|+..+ +.|.+||+.++. ....+..|.. .+
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 338 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL 338 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence 899999976 43 45566666665554 4889888777654 379999998774 2345555544 67
Q ss_pred EEEEEeeCCcEEEEEeeCCCe--EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec----CCcE
Q 006808 203 RFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----TGVC 276 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----dg~i 276 (630)
..+.|++++..+++.. .++. |++|++.+++.. ..+..+...+..+.++ |++..++.... .+.+
T Consensus 339 ~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i 407 (710)
T 2xdw_A 339 EWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGII 407 (710)
T ss_dssp EEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEE
T ss_pred EEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecC-----CCCCEEEEEEeCCCCCCEE
Confidence 8899987666666655 5774 666777555422 1222223334444554 78876654422 4689
Q ss_pred EEEEcCCcc
Q 006808 277 YIWYGQNIE 285 (630)
Q Consensus 277 ~iwd~~~~~ 285 (630)
++||+.+++
T Consensus 408 ~~~d~~tg~ 416 (710)
T 2xdw_A 408 YHCDLTKEE 416 (710)
T ss_dssp EEEETTSSS
T ss_pred EEEECCCCc
Confidence 999998776
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.8e-13 Score=127.59 Aligned_cols=216 Identities=11% Similarity=0.112 Sum_probs=155.2
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC
Q 006808 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (630)
Q Consensus 15 ~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (630)
..+++|++++.++.|.+||.++|+.+.++..+.. ....++.+.+. +++++ +.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-----------------~~~~~~~~~pd---------G~ilv--s~ 54 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-----------------WECNSVAATKA---------GEILF--SY 54 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-----------------CCCCEEEECTT---------SCEEE--EC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-----------------CCCcCeEECCC---------CCEEE--eC
Confidence 3467899999999999999999999998875431 01122333221 66666 56
Q ss_pred CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeecCC------CCeEEEEE
Q 006808 95 GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAST------KGISCMAV 167 (630)
Q Consensus 95 ~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~------~~v~~l~~ 167 (630)
++.|..||. +++.++++..++...+.++.+.++|+++++.+. ++.|..+|. +|+.+..+.... .....+++
T Consensus 55 ~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 55 SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE
Confidence 778999999 899888886544457889999999999999887 788888885 788777765321 23456778
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
.++|.++++.. +.|..||.. |+.+.++..+ ..+.++.+.++|..+++++ .++.|..+|..+++.. ..+....
T Consensus 133 ~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~---w~~~~~~ 206 (276)
T 3no2_A 133 NKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV---RRVNAND 206 (276)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE---EEEEGGG
T ss_pred CCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE---EEecCCC
Confidence 99999999886 899999987 9998888754 3456678889999888776 5778999999887743 2221110
Q ss_pred ----CceeeeeEEecCCccCCCCCEEEEEe
Q 006808 246 ----PAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 246 ----~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
.-......... ++|..+++..
T Consensus 207 ~~~~~l~~~~~~~~~-----~~G~i~v~~~ 231 (276)
T 3no2_A 207 IEGVQLFFVAQLFPL-----QNGGLYICNW 231 (276)
T ss_dssp SBSCCCSEEEEEEEC-----TTSCEEEEEE
T ss_pred CCCccccccccceEc-----CCCCEEEEec
Confidence 11223334443 7788777764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-12 Score=127.23 Aligned_cols=238 Identities=8% Similarity=-0.029 Sum_probs=154.1
Q ss_pred eEeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
..++++++|++++ +.+.++.|.+|+..++.......... ....++++.+. +.
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------~~p~~i~~~~~---------g~ 79 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL------------------YQPQGLAVDGA---------GT 79 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC------------------CSCCCEEECTT---------CC
T ss_pred cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc------------------CCcceeEECCC---------CC
Confidence 3559999999777 54678899999976544321111000 11234444432 45
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
++++..++.|.+||...+... .+.......+.++++.++|+.+++...++.|.+|+..+.............+.++++
T Consensus 80 -l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 80 -VYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp -EEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred -EEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 444444888999998766543 332233357899999999987777777889999986655443222222346788999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
+|+|+++++.. +.|.+||............+...+.+++++++|..+++.. .++.|.+|+....... .....+
T Consensus 158 ~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~----~~~~~~ 232 (270)
T 1rwi_B 158 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST----VLPFTG 232 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCE----ECCCCS
T ss_pred eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcce----eeccCC
Confidence 99998777665 7999999877654433333336788999999996555544 5788999998764322 111111
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
. .....+++. ++|..+++...++.|++|+....+.
T Consensus 233 ~-~~p~~i~~~-----~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 233 L-NTPLAVAVD-----SDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp C-SCEEEEEEC-----TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C-CCceeEEEC-----CCCCEEEEECCCCEEEEEcCCCccc
Confidence 1 234455665 8899888888899999999865543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=9.8e-13 Score=133.25 Aligned_cols=237 Identities=13% Similarity=0.109 Sum_probs=158.9
Q ss_pred EeEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccc------cccccccccccccccccccceeeEEe
Q 006808 10 LTSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA------STETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 10 ~~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
.++|+|||+++++++ .++.|.+||..+++.+.++.... ..+..+.++|+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd--------------- 118 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD--------------- 118 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT---------------
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC---------------
Confidence 459999999999886 26789999999999888775321 12222333333
Q ss_pred cccccccccccCCcEEEEEeC--CCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCC-
Q 006808 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT- 148 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~- 148 (630)
+++|+++.. ++.|.+||+.+++.+.. +.. .....+.+.|++ ..+++.+.||.+.+|++..
T Consensus 119 ------------g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 119 ------------GKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp ------------SSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred ------------CCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 777888764 57899999999988766 532 223446677865 5688888999999999865
Q ss_pred CceeE------EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce--eeEeec------C----CCCeEEEEEe
Q 006808 149 GSLLG------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG------H----PGAVRFMTFS 208 (630)
Q Consensus 149 ~~~~~------~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~--~~~~~~------h----~~~v~~l~~s 208 (630)
++... .+.....++ .+.++|++..++..+ +.|+++|+..... ...+.- + ......++|+
T Consensus 184 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 55442 222222222 334467776666555 8999999875532 222211 0 0112237899
Q ss_pred eCCcEEEEEee----------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 209 DNGKYVLSSAV----------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 209 p~~~~l~~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
|+++.++++.. ..+.|.+||+.+.+.. ..+.... ...+.++ |+|++|++++. +.|.+
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-----~~i~~~~--p~~ia~s-----pdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-----ARIPGRD--ALSMTID-----QQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-----EEEECTT--CCEEEEE-----TTTTEEEEECS-SCEEE
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-----EEEecCC--eeEEEEC-----CCCCEEEEeCC-CeEEE
Confidence 99888887653 1348999999988643 2233233 4556666 99999998887 99999
Q ss_pred EEcCCc--cccccc
Q 006808 279 WYGQNI--EELRNT 290 (630)
Q Consensus 279 wd~~~~--~~~~~~ 290 (630)
||..++ +.+...
T Consensus 330 ~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 330 YDISQPEPKLLRTI 343 (361)
T ss_dssp EECSSSSCEEEEEE
T ss_pred EECCCCcceeeEEe
Confidence 999999 776653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-13 Score=137.58 Aligned_cols=248 Identities=10% Similarity=0.062 Sum_probs=149.4
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEeccccccccc---ccccccccccccccceeeEEecccccccccccCCc
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT---SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+.|||||++||+++.++.|++||+.+++....+..+...... +.|... ............|.|. +.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~~~~spd---------g~ 154 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--TKLVGIEILKRDWQPL---------TS 154 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCC---------CS
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--CccccccccccccCCC---------Cc
Confidence 489999999999999999999999988765544422221000 111000 0000000000122221 33
Q ss_pred EEEEE-----eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCC------CcEEEEeCCCCceeEEe
Q 006808 88 LLVLG-----TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 88 ~l~~~-----~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~d------g~v~iwd~~~~~~~~~~ 155 (630)
.++.+ ..+..|.+||+.+++..... .+...+..+.|+| +++.|+.++.+ ..|.+||+..++.....
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (396)
T 3c5m_A 155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK 232 (396)
T ss_dssp HHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred ceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence 33333 34557999999988765333 4667899999999 78877665543 36889998766543322
Q ss_pred ecC-CCCeEEEEEccCCCEEEEeC-----Ce--EEEEECCCCceeeEeecCCCCeEEEEEee-CCcEEEEEee-------
Q 006808 156 RAS-TKGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAV------- 219 (630)
Q Consensus 156 ~~~-~~~v~~l~~~p~~~~l~~~~-----g~--i~lwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~~~~~------- 219 (630)
... ...+..++|+|+|++|+.++ .. |++||+.+++...... ... .. +.|+| +|+++++++.
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeec
Confidence 311 23578899999999877764 24 9999998886543222 222 33 89999 9998877542
Q ss_pred --------CCCeEEEEEcCCCccccceeeeeecCCce----------eeeeEEecCCccCCCCCEEEEEec-CCcEEEE-
Q 006808 220 --------GERYIALWRTDGVKKQSASCVLAMEHPAV----------FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW- 279 (630)
Q Consensus 220 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iw- 279 (630)
.+..|++||+.+++.. .+ . .+... ......|+ |+|++|+.++. ++...||
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~~~~---~l-~-~~~~~~~~~~~~~~~~~~~~~~s-----~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAKSAQ---KL-C-KHSTSWDVLDGDRQITHPHPSFT-----PNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp -----CCCCCCEEEEEETTTTBCC---EE-E-ECCCCCCCBTTBSSTTCCCCEEC-----TTSSEEEEEECTTSSCEEEE
T ss_pred cccccccCCCCcEEEEecccCceE---Ec-c-CCCCccccccccccCCCCCceEc-----cCCCeEEEEecCCCCceEEE
Confidence 2468999999877533 11 1 11111 12233455 99998887765 5555555
Q ss_pred -EcCCc
Q 006808 280 -YGQNI 284 (630)
Q Consensus 280 -d~~~~ 284 (630)
++.++
T Consensus 380 ~~~~~~ 385 (396)
T 3c5m_A 380 ADVPES 385 (396)
T ss_dssp EECCTT
T ss_pred EEEccc
Confidence 44444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=128.62 Aligned_cols=231 Identities=12% Similarity=0.080 Sum_probs=151.1
Q ss_pred EeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
+++|+|+|+ +++++..++.|..|+..++ ...+..+.. .+.++++.+. +.+
T Consensus 32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~------------------~~~~l~~~~d---------g~l 82 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH------------------HQNGHCLNKQ---------GHL 82 (296)
T ss_dssp EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS------------------SEEEEEECTT---------CCE
T ss_pred CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC------------------CcceeeECCC---------CcE
Confidence 459999998 7778888999999999877 444443222 2334555442 566
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEcc--C-CCCCCEEEEEEecCCCEEEEE----e-------------CCCcEEEEeCCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLS--D-CHPGGVSAISFATHGSCIYSA----G-------------ADGMVCEIDPLT 148 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~--~-~h~~~v~~~~~s~~g~~l~s~----~-------------~dg~v~iwd~~~ 148 (630)
+++...++.|.+||..+++...... . .....+.+++++|+|+++++. + ..+.|..++..
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 6555566889999998887542221 1 112356789999999988773 2 13456666654
Q ss_pred CceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECC-CCce---eeEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 149 ~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~-~~~~---~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
++ ...+..+......++|+|+|+.+++.+ +.|++|++. ++.. ...+..+...+.+++++++|+.+++. ++
T Consensus 162 g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~ 237 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD 237 (296)
T ss_dssp SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence 44 344455566778999999999885555 799999987 4544 23343345567789999999865544 67
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
.|.+|+.. ++. ...+..+.. +..++|. .|+++.|++++.+ .+.-++..+...
T Consensus 238 ~v~~~~~~-g~~-----~~~~~~~~~-~~~~~f~----~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 238 GVHVLTPD-GDE-----LGRVLTPQT-TSNLCFG----GPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp EEEEECTT-SCE-----EEEEECSSC-CCEEEEE----STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred eEEEECCC-CCE-----EEEEECCCC-ceeEEEE----CCCCCEEEEEcCC-eEEEEEcccccc
Confidence 89999986 332 222222222 4445552 1788888888875 455556665544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-12 Score=128.68 Aligned_cols=235 Identities=9% Similarity=0.035 Sum_probs=160.1
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
++. ++.++++...++.|.+||..+++.+.++... . ....+++.+. + .+++
T Consensus 50 ~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~------------------~p~~i~~~~~---------g-~lyv 99 (328)
T 3dsm_A 50 VIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-T------------------SPRYIHFLSD---------E-KAYV 99 (328)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-S------------------SEEEEEEEET---------T-EEEE
T ss_pred EEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-C------------------CCcEEEEeCC---------C-eEEE
Confidence 453 3445555556799999999999998877421 1 1223333221 4 4555
Q ss_pred Ee-CCCeEEEEEccCCeeeEEccCCC----CCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 92 GT-GGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 92 ~~-~~g~v~iwd~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+. .++.|.+||+.+++....+..+. ......+++ ++..++.++ .++.|.+||+.+++.+..+... .....
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~ 176 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTS 176 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCC
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccc
Confidence 55 78999999999998876554332 114566777 345555554 4889999999999988887753 34578
Q ss_pred EEEccCCCEEEEeCC------------eEEEEECCCCceeeEeecC-CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 165 MAVSSDGKMLATAAG------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 165 l~~~p~~~~l~~~~g------------~i~lwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
++++|+|++++++.+ .|.+||..+++....+... ......++|+|++++++++. . .|.+||..+
T Consensus 177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~--~v~~~d~~t 253 (328)
T 3dsm_A 177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N--DIWRMPVEA 253 (328)
T ss_dssp CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S--SEEEEETTC
T ss_pred eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c--EEEEEECCC
Confidence 999999998777653 6999999999877776532 23678999999999988865 2 899999988
Q ss_pred CccccceeeeeecCCceeeeeEEecCCccCC-CCCEEEEE----ecCCcEEEEEcCCcccccccC
Q 006808 232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAI----SETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~ 291 (630)
++... .............++++ | ++...++. ..++.|.+||.. ++.+....
T Consensus 254 ~~~~~---~~~~~~~~~~p~gi~vd-----p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 254 DRVPV---RPFLEFRDTKYYGLTVN-----PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SSCCS---SCSBCCCSSCEEEEEEC-----TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred Cceee---eeeecCCCCceEEEEEc-----CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 76421 11111112334455665 7 45555555 568899999987 87766543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-12 Score=128.47 Aligned_cols=213 Identities=10% Similarity=0.068 Sum_probs=136.5
Q ss_pred EECCCCCEEEEee---------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 12 SFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 12 ~fs~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+| ||+++|... .++.|.+||+.+++... + ..+ ..+.|.|.
T Consensus 21 ~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~------------------~~~~~SpD------ 69 (347)
T 2gop_A 21 RT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENA------------------TMPRISPD------ 69 (347)
T ss_dssp EE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESC------------------EEEEECTT------
T ss_pred eE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccC------------------CCeEECCC------
Confidence 56 899888653 25679999998876532 2 122 23445443
Q ss_pred ccCCcEEEEEeCC---C--eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-------------------
Q 006808 83 KLGSSLLVLGTGG---G--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------------- 138 (630)
Q Consensus 83 ~~~~~~l~~~~~~---g--~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------------------- 138 (630)
+..|+.++.+ + .|.+|++.+++...... +.. +.+++|+|+|+.|+.++.+
T Consensus 70 ---g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g 143 (347)
T 2gop_A 70 ---GKKIAFMRANEEKKVSEIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD 143 (347)
T ss_dssp ---SSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred ---CCEEEEEEeccCCCcceEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence 6666666543 3 38888998887653332 223 9999999999998877632
Q ss_pred --------CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C--------eEEEEECCCCceeeEeecCCCC
Q 006808 139 --------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------QLKTFNCSDHKKMQKFSGHPGA 201 (630)
Q Consensus 139 --------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g--------~i~lwd~~~~~~~~~~~~h~~~ 201 (630)
..|++||+.+++.+..+.. . .+..++|+|+| +++++. . ...+|.+.+++ ...+..+ ..
T Consensus 144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~ 218 (347)
T 2gop_A 144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VS 218 (347)
T ss_dssp ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ES
T ss_pred cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cc
Confidence 5799999998887455554 3 78899999999 777663 1 23444333554 3444444 55
Q ss_pred eEEEEEeeCCcEEEEEeeCC-------CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 202 VRFMTFSDNGKYVLSSAVGE-------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 202 v~~l~~sp~~~~l~~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
+..+ +|+|++|+.++..+ ..|.+|| +++.. .....+...+.....| + ++ ++++++.+|
T Consensus 219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~----~l~~~~~~~~~~~~~~-----s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM----GILDEVDRGVGQAKIK-----D-GK-VYFTLFEEG 283 (347)
T ss_dssp EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE----ESSTTCCSEEEEEEEE-----T-TE-EEEEEEETT
T ss_pred eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE----eccccCCcccCCccEE-----c-Cc-EEEEEecCC
Confidence 5554 99999988876322 3678887 33311 1111222333222445 2 56 888889999
Q ss_pred cEEEEEcC
Q 006808 275 VCYIWYGQ 282 (630)
Q Consensus 275 ~i~iwd~~ 282 (630)
.++|| +.
T Consensus 284 ~~~l~-~~ 290 (347)
T 2gop_A 284 SVNLY-IW 290 (347)
T ss_dssp EEEEE-EE
T ss_pred cEEEE-Ec
Confidence 99999 85
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-11 Score=122.75 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=145.6
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++|+|+|++++++..++.|.+||..+++.......+. ..+.+++|.+. +.++
T Consensus 49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------------~~~~~i~~~~d---------g~l~ 101 (333)
T 2dg1_A 49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK------------------ANPAAIKIHKD---------GRLF 101 (333)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS------------------SSEEEEEECTT---------SCEE
T ss_pred CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC------------------CCcceEEECCC---------CcEE
Confidence 45899999988888889999999998887654332111 13445555443 5555
Q ss_pred EEEeCC----CeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecC
Q 006808 90 VLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 90 ~~~~~~----g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~ 158 (630)
++...+ +.|.+||..++.....+. ..+...+.+++++|+|+.+++... .+.|..||..+++... +...
T Consensus 102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 180 (333)
T 2dg1_A 102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN 180 (333)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence 555555 589999998876542221 234467999999999987776653 3567777766555433 2223
Q ss_pred CCCeEEEEEccCCCEEEEeC---CeEEEEECCC-CceeeE--------eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~~~~--------~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
...+..++|+|+|+.++++. +.|++|++.+ +..+.. +.++ ..+..++++++|+.+++.. .++.|.+
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-~~~~v~~ 258 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-GQGRVLV 258 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-TTTEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-CCCEEEE
Confidence 34578999999998665543 7999999864 333221 1222 3678899999998776655 5789999
Q ss_pred EEcCCCccccceeeeeecCC----ceeeeeEEecCCccCCCCCEEEEEecCC
Q 006808 227 WRTDGVKKQSASCVLAMEHP----AVFMDCRCIDNGGVDDAGLYVLAISETG 274 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~s~dg 274 (630)
|+.. ++.. ..+..... ......++|+ |++..|+.++.+|
T Consensus 259 ~d~~-g~~~---~~~~~~~~~~g~~~~~~~~~~~-----~dg~~L~v~~~~g 301 (333)
T 2dg1_A 259 FNKR-GYPI---GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSNDI 301 (333)
T ss_dssp ECTT-SCEE---EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEECG
T ss_pred ECCC-CCEE---EEEEcCCCccccccCcceEEEC-----CCCCEEEEEeCcc
Confidence 9984 3321 12221111 0134455665 8887777666653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-13 Score=145.50 Aligned_cols=196 Identities=12% Similarity=0.064 Sum_probs=131.0
Q ss_pred EEC--CCCCE-EEEeeC-CCcEEEEECC--C-CcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 12 SFS--PALDY-FAICSG-DARIKIWDTL--K-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 12 ~fs--~dg~~-las~s~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.|+ |||++ ||.++. +..|.+|++. + +. ...+..... ......+..++|.|.
T Consensus 83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------~~~~~~~~~~~~spD-------- 140 (662)
T 3azo_A 83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------VGGGLRWADPVLLPE-------- 140 (662)
T ss_dssp EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------STTCEEEEEEEEETT--------
T ss_pred eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------CCCCccccCcEECCC--------
Confidence 454 99998 877664 5677777765 2 33 333332100 001223456667665
Q ss_pred CCcEEEEEeCC----------CeEEEEEccC------CeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC--------Cc
Q 006808 85 GSSLLVLGTGG----------GDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--------GM 140 (630)
Q Consensus 85 ~~~~l~~~~~~----------g~v~iwd~~~------~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--------g~ 140 (630)
++.|++++.+ ..|++||+.+ +... .+...+...+..++|+|||++|+.++.+ ..
T Consensus 141 -g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 141 -RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp -TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred -CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 6677777765 4799999988 5543 4431355678889999999999877754 37
Q ss_pred EEEEeCC-CC---ceeEEeecCCCCeEEEEEccCCCEEEEeC--C--eEEEEECCCCceeeEeecCCCC--------eEE
Q 006808 141 VCEIDPL-TG---SLLGKFRASTKGISCMAVSSDGKMLATAA--G--QLKTFNCSDHKKMQKFSGHPGA--------VRF 204 (630)
Q Consensus 141 v~iwd~~-~~---~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g--~i~lwd~~~~~~~~~~~~h~~~--------v~~ 204 (630)
|++||+. ++ +.......+...+..++|+|||+++++++ + .|++||+.+++......++... +..
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 9999998 56 44444444567899999999999777766 4 7888888777654333333222 567
Q ss_pred EEEeeCCcEEEEEeeCCCeEEEE--EcCCCc
Q 006808 205 MTFSDNGKYVLSSAVGERYIALW--RTDGVK 233 (630)
Q Consensus 205 l~~sp~~~~l~~~~~~d~~i~vw--d~~~~~ 233 (630)
++|+|+++.++++. . +.+++| ++.++.
T Consensus 299 ~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 299 FAPLANGLIAVVHG-K-GAAVLGILDPESGE 327 (662)
T ss_dssp EEECTTSCEEEEEB-S-SSCEEEEEETTTTE
T ss_pred EeEeCCCEEEEEEE-c-CccEEEEEECCCCc
Confidence 89999999887776 5 888888 554443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-12 Score=139.47 Aligned_cols=201 Identities=8% Similarity=-0.026 Sum_probs=135.7
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCC-C----eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCc-
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM- 140 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~-g----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~- 140 (630)
.+..+.|+|. +++|+.+... | .|++||+.+++....... + ..+.+++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPD---------g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 126 ALRGYAFSED---------GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp EEEEEEECTT---------SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCS
T ss_pred EEEEEEECCC---------CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCCEEEEEEECCcc
Confidence 4556777755 6667665543 3 799999999987643322 2 23678999999999998887766
Q ss_pred ---------------EEEEeCCCCcee--EEeec--CCCCeEEEEEccCCCEEEEeC-------CeEEEEECCC------
Q 006808 141 ---------------VCEIDPLTGSLL--GKFRA--STKGISCMAVSSDGKMLATAA-------GQLKTFNCSD------ 188 (630)
Q Consensus 141 ---------------v~iwd~~~~~~~--~~~~~--~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~------ 188 (630)
|++|++.+++.. ..+.. +...+..+.|+|||++|+.++ ..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 999999887632 22332 344578999999999988764 3799999976
Q ss_pred Cc-eeeEeecCCCCeEEEEEeeCCcEEEEEeeCC---CeEEEEEcCCCccccceeeeeecCCc-eeeeeEEecCCccCCC
Q 006808 189 HK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDA 263 (630)
Q Consensus 189 ~~-~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 263 (630)
+. ....+..+...+.. .|+|+|..|+..+..+ ..|.+|++.++.... ......+.. ..+..+.+. ++
T Consensus 275 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~-----~~ 346 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK--WKVLVPEHEKDVLEWVACV-----RS 346 (710)
T ss_dssp SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG--CEEEECCCSSCEEEEEEEE-----TT
T ss_pred CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc--ceeccCCCCCCeEEEEEEE-----cC
Confidence 43 45666667666655 5889999888776433 369999998764211 111223322 344444554 67
Q ss_pred CCEEEEEecCCc--EEEEEcCCccc
Q 006808 264 GLYVLAISETGV--CYIWYGQNIEE 286 (630)
Q Consensus 264 ~~~l~s~s~dg~--i~iwd~~~~~~ 286 (630)
+.++++...+|. |++|++.+++.
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CEEEEEEEECCEEEEEEEECCCCCE
Confidence 778888888884 56667655543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-11 Score=131.49 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=147.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC--CCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~ 163 (630)
+.++++...++.|.++|..+++.+.++..+ ..+..+.|+|+|+++++++.|+.|.+||+. +++.+..+.... ...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~ 243 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR 243 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence 445666667889999999999988777533 457799999999999999999999999996 888888887543 467
Q ss_pred EEEEc----cCCCEEEEeC---CeEEEEECCCCceeeEeec----------CCC-CeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 164 CMAVS----SDGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HPG-AVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 164 ~l~~~----p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~----------h~~-~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.++|+ |+|+++++++ ++|.++|..+.+.+.++.. |.. .+..+.+++++..+++.....|.|.
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 99999 7999999887 8999999999988877642 222 5788899998877776666779999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~ 289 (630)
++|....+.. .+..+... .......|+ |+|+++++++ .++.|.++|..+++.+..
T Consensus 324 ~vd~~~~~~~---~v~~i~~~-~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 324 LVDYTDLNNL---KTTEISAE-RFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EEETTCSSEE---EEEEEECC-SSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEecCCCccc---eeeeeecc-ccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence 9998775432 12222222 223344565 9999887766 578999999999876543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-12 Score=129.52 Aligned_cols=218 Identities=10% Similarity=0.025 Sum_probs=138.8
Q ss_pred eEeEECCCCCEEEEeeCC---C--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGD---A--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..++|||||++||+++.+ + .|.+|++.+++........ . +..+.|.|.
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~------------------~--~~~~~wspd------- 114 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK------------------N--IRSLEWNED------- 114 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES------------------E--EEEEEECTT-------
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC------------------C--ccceeECCC-------
Confidence 345999999999988754 3 3888898887765433211 1 445566554
Q ss_pred cCCcEEEEEeC---------------------------CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe
Q 006808 84 LGSSLLVLGTG---------------------------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG 136 (630)
Q Consensus 84 ~~~~~l~~~~~---------------------------~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 136 (630)
++.|+.++. ...|.+||+.+++.+..+.. . .+..+.|+|+| .+++++
T Consensus 115 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 115 --SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp --SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEE
T ss_pred --CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEe
Confidence 555665542 24699999998887334432 2 78899999999 777775
Q ss_pred CCC-------cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC----------CeEEEEECCCCceeeEeecCC
Q 006808 137 ADG-------MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHP 199 (630)
Q Consensus 137 ~dg-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----------g~i~lwd~~~~~~~~~~~~h~ 199 (630)
.++ ...+|.+.+++. ..+..+ ..+..+ +|+|++|+.++ ..|++|| +++......+|.
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~ 262 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD 262 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred cccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence 542 334444335544 334334 445444 99999887654 2688888 555444445566
Q ss_pred CCeEE-EEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcE-E
Q 006808 200 GAVRF-MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC-Y 277 (630)
Q Consensus 200 ~~v~~-l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i-~ 277 (630)
..+.. +.|+ ++ .+++++ .++.+++| +.+++. .....+ ...+....++ | .++++++.++.. .
T Consensus 263 ~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~~-----~~~~~~-~~~v~~~~~s-----~--~~~~~~~~~~~~~~ 325 (347)
T 2gop_A 263 RGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGEI-----KPIAKG-RHWIMGFDVD-----E--IVVYLKETATRLRE 325 (347)
T ss_dssp SEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSSE-----EEEECS-SSEEEEEEES-----S--SEEEEEECSSSCCE
T ss_pred cccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCce-----EEEecC-CCeEEeeeee-----C--cEEEEEcCCCChHH
Confidence 77886 8999 88 666665 68999999 874331 122233 3344455565 6 677777776654 7
Q ss_pred EEEcC
Q 006808 278 IWYGQ 282 (630)
Q Consensus 278 iwd~~ 282 (630)
||.+.
T Consensus 326 l~~~~ 330 (347)
T 2gop_A 326 LFTWD 330 (347)
T ss_dssp EEEES
T ss_pred heEeC
Confidence 77665
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-11 Score=118.94 Aligned_cols=192 Identities=13% Similarity=0.147 Sum_probs=136.5
Q ss_pred eEeEE-CCCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 9 ILTSF-SPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 9 ~~~~f-s~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
..+++ .++|.++++... ++.|.+|+ .+++.+..+.... ......+++.+. +
T Consensus 80 ~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~-----------------~~~~~~i~~~~~---------g 132 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATI-----------------LQHPRGVTVDNK---------G 132 (286)
T ss_dssp EEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTT-----------------CSCEEEEEECTT---------S
T ss_pred eEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCcc-----------------CCCceEEEEeCC---------C
Confidence 34588 578877776643 78999999 5677766553210 112334444442 6
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC--CCeE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST--KGIS 163 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~v~ 163 (630)
.++++...++.|.+|+.. ++....+. .++...+.+++++++|+.+++...++.|++||. .++.+..+..+. ..+.
T Consensus 133 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~ 210 (286)
T 1q7f_A 133 RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPI 210 (286)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEE
T ss_pred CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCc
Confidence 666666678899999965 44443432 134567899999999987777778899999997 566666665432 5789
Q ss_pred EEEEccCCCEEEEeC--C-eEEEEECCCCceeeEeecCCC--CeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 164 CMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g-~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.++++|+|.++++.. + .|.+|+. +++.+..+..+.. .+.+++++|+|+.+++ + .++.|++|++...
T Consensus 211 ~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~-~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 211 GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-S-KDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-E-TTTEEEEEECSCC
T ss_pred EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-C-CCCeEEEEEcccc
Confidence 999999998888875 4 8999995 5667777765433 4789999999986655 5 5899999998654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-12 Score=122.47 Aligned_cols=188 Identities=12% Similarity=0.135 Sum_probs=143.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISC 164 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~ 164 (630)
+++|++++.++.|.+||..+|+.++++..+....+.++.++|+|++++ +.++.|..||. +++.+..+..+. ..+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 678999999999999999999999888643324688999999999888 35778999998 899999988753 47889
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceeeEee------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+.+.|+|+++++.+ +.|..+|. +|+.+.++. ++......+++.++|.++++.. .++.|.+||.. ++..
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCEE
Confidence 99999999998875 36666675 677776664 2223455677899999988776 68999999987 6643
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..+... ..... .... ++|..+++++.+++|..||..+|+.+...
T Consensus 159 ---w~~~~~--~~~~~-~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 159 ---NSVKLS--GTPFS-SAFL-----DNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp ---EEEECS--SCCCE-EEEC-----TTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred ---EEEECC--CCccc-eeEc-----CCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 233322 22222 2333 78999999888889999999989876554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.2e-12 Score=138.33 Aligned_cols=237 Identities=10% Similarity=0.007 Sum_probs=145.6
Q ss_pred ECCCCCEEEEeeCCC---cEEEE--ECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 13 FSPALDYFAICSGDA---RIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 13 fs~dg~~las~s~dg---~i~vw--d~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.+|+|++++....++ .-.+| +...+....-+.. . .+..+|. ..+..+.|+|. ++
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~-~----------~~a~~~~-~~~~~~~~SPD---------G~ 133 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDP-N----------GWSKDGT-VSLGTWAVSWD---------GK 133 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECG-G----------GSSSSSC-EEEEEEEECTT---------SS
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEch-H----------HhccCCC-EEEEEEEECCC---------CC
Confidence 458999988777643 34444 4434432221111 0 0011232 34566677754 55
Q ss_pred EEEEEe-----CCCeEEEEEccCCeee-EEccCCCCCCEEEEEEecCCCEEEEEeCCCc-------------EEEEeCCC
Q 006808 88 LLVLGT-----GGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPLT 148 (630)
Q Consensus 88 ~l~~~~-----~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~-------------v~iwd~~~ 148 (630)
+|+.+. .+..|++||+.+++.+ ...... ....+++|+|||+.|+.++.|.. |++|++.+
T Consensus 134 ~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t 211 (695)
T 2bkl_A 134 KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT 211 (695)
T ss_dssp EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS
T ss_pred EEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCC
Confidence 566332 2346999999998864 221111 11268999999999999888776 99999998
Q ss_pred Cce----eEEeecCCCCeEEEEEccCCCEEEEeC--C----eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 149 GSL----LGKFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 149 ~~~----~~~~~~~~~~v~~l~~~p~~~~l~~~~--g----~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
++. +.....+...+..+.|+|+|++|+.++ + .|++|+..++. ...+..+...+....| ++|. ++..+
T Consensus 212 ~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 212 EPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp CGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred CchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEE
Confidence 762 222333445788999999999888765 4 67888765554 4455556666666666 6777 55555
Q ss_pred eC---CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 219 VG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 219 ~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
.. ++.|.+|++.++.......+. ..+....+..+.+. ++.++++...||..+||.+.
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 289 DEGAPRQRVFEVDPAKPARASWKEIV-PEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CTTCTTCEEEEEBTTBCSGGGCEEEE-CCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCEEEEEeCCCCCccCCeEEe-cCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence 32 478999999776431111121 12223344444443 46778888889988888654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-12 Score=139.43 Aligned_cols=237 Identities=8% Similarity=-0.035 Sum_probs=148.3
Q ss_pred eEeEECCCCCEEEE-----eeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAI-----CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..++|||||++||. |+.+.+|++||+.+|+.+. ..+... .....+.|.+.
T Consensus 124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~----------------~~~~~~~wspD------- 178 (695)
T 2bkl_A 124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEG----------------GKYATPKWTPD------- 178 (695)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSC----------------CTTCCCEECTT-------
T ss_pred EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCc----------------ccccceEEecC-------
Confidence 45599999999994 3445789999999987641 000000 01134566654
Q ss_pred cCCcEEEEEeCCCe-------------EEEEEccCCee---eEEccCCCCCCEEEEEEecCCCEEEEEeCCC----cEEE
Q 006808 84 LGSSLLVLGTGGGD-------------VLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCE 143 (630)
Q Consensus 84 ~~~~~l~~~~~~g~-------------v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg----~v~i 143 (630)
++.|+.++.+.. |++|++.++.. +..-...|...+.++.|+|+|++|+.++.++ .|++
T Consensus 179 --g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 --SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp --SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred --CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 667888777654 99999988762 1112234556889999999999988777665 6777
Q ss_pred EeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCce--eeEeecC--CCCeEEEEEeeCCcEE
Q 006808 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKFSGH--PGAVRFMTFSDNGKYV 214 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~--~~~~~~h--~~~v~~l~~sp~~~~l 214 (630)
|+..+++ ...+..+...+....+ |+|.+++.+. +.|.+||+.++.. ...+..| ...+..++|+ ++..+
T Consensus 257 ~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 257 KRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp ECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred EcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 7765554 3445555555666666 5666545443 5899999987653 2344333 4457888888 55555
Q ss_pred EEEeeCCCeEEEEEcCC-CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec----CCcEEEEEcCCcc
Q 006808 215 LSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----TGVCYIWYGQNIE 285 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~ 285 (630)
++.. .|+..++|.+.. +... ....+.. ...+....++ |++..++.... .+.|++||+.+++
T Consensus 334 ~~~~-~dg~~~l~~~~~~g~~~---~~l~~~~-~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 334 LEYL-KDATSEVRVATLKGKPV---RTVQLPG-VGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEE-ETTEEEEEEEETTCCEE---EECCCSS-SSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEE-ECCEEEEEEEeCCCCee---EEecCCC-CeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 5554 688888776542 2211 1112221 2233334444 78877664332 4689999998765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-11 Score=120.05 Aligned_cols=190 Identities=8% Similarity=-0.028 Sum_probs=130.9
Q ss_pred eeeEEecccccccccccCCc-EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~-~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
...++|.+. ++ +++++..++.|..|+..++ ...+ ..+...+.+++++|+|+++++...++.|.+||.
T Consensus 30 ~eg~~~d~~---------g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 30 TEGPVYVPA---------RSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEEEEEGG---------GTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred ccCCeEeCC---------CCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 345667654 44 7888888999999999988 3233 246678999999999998777777789999999
Q ss_pred CCCceeEEeecC----CCCeEEEEEccCCCEEEEeC-------------------CeEEEEECCCCceeeEeecCCCCeE
Q 006808 147 LTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVR 203 (630)
Q Consensus 147 ~~~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v~ 203 (630)
.+++........ ...+..++++|+|+++++.+ +.|+.++.. ++ +..+..+.....
T Consensus 98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~ 175 (296)
T 3e5z_A 98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPN 175 (296)
T ss_dssp TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEE
T ss_pred CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCc
Confidence 888764433221 12457899999999888621 356666654 44 444555667789
Q ss_pred EEEEeeCCcEEEEEeeCCCeEEEEEcC-CCcc-ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 204 FMTFSDNGKYVLSSAVGERYIALWRTD-GVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.++|+|+++.+ .+...++.|++|++. .+.. . ....+ .........+++. ++|.+.++. ++.|.+|+.
T Consensus 176 gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~-~~~~~--~~~~~~p~~i~~d-----~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 176 GLAFLPSGNLL-VSDTGDNATHRYCLNARGETEY-QGVHF--TVEPGKTDGLRVD-----AGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEECTTSCEE-EEETTTTEEEEEEECSSSCEEE-EEEEE--CCSSSCCCSEEEB-----TTSCEEEEE--TTEEEEECT
T ss_pred cEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcC-CCeEe--eCCCCCCCeEEEC-----CCCCEEEEc--CCeEEEECC
Confidence 99999999998 444468899999997 3332 1 01122 1122233455665 888866655 788999986
Q ss_pred C
Q 006808 282 Q 282 (630)
Q Consensus 282 ~ 282 (630)
.
T Consensus 245 ~ 245 (296)
T 3e5z_A 245 D 245 (296)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-11 Score=119.01 Aligned_cols=223 Identities=10% Similarity=0.025 Sum_probs=150.8
Q ss_pred CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEcc
Q 006808 25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS 104 (630)
Q Consensus 25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~ 104 (630)
.++.|.+||..+++....+.... .. ...+.....+.+. + +.+.++...++.|.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~---n~---------~~lg~~~~~i~~~--~--------~~lyv~~~~~~~v~viD~~ 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRA---NG---------FKLGDVAQSMVIR--D--------GIGWIVVNNSHVIFAIDIN 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHH---HS---------SCCBSCEEEEEEE--T--------TEEEEEEGGGTEEEEEETT
T ss_pred CCceEEEEECCCCEEhhhhHhhh---cC---------cccCccceEEEEE--C--------CEEEEEEcCCCEEEEEECc
Confidence 37899999999998765442100 00 0011112223321 1 4455555567899999999
Q ss_pred CCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEeecCC-----CCeEEEEEccCCCEEEEe-
Q 006808 105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST-----KGISCMAVSSDGKMLATA- 177 (630)
Q Consensus 105 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~~~~l~~~- 177 (630)
+++.+.++. ....+..+++++++ .++.+. .++.|.+||..+++....+.... .....+++ .++..+++.
T Consensus 73 t~~~~~~i~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~ 148 (328)
T 3dsm_A 73 TFKEVGRIT--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW 148 (328)
T ss_dssp TCCEEEEEE--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred ccEEEEEcC--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence 999887773 34678999999998 455554 88999999999999887776543 14566777 455555553
Q ss_pred --CCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC----------CeEEEEEcCCCccccceeeeeecC
Q 006808 178 --AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 178 --~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
++.|.+||+.+++.+.++... .....+.++|+|++++++. .+ +.|.+||..+++.. .......
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~ 223 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL 223 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT
T ss_pred CCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCeEE---EEEecCC
Confidence 278999999999988877643 3456889999998766654 34 68999999887633 1222221
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
......++++ |++++|.++.. .|.+||..+++.
T Consensus 224 -g~~p~~la~~-----~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 224 -GDWPSEVQLN-----GTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp -TCCCEEEEEC-----TTSCEEEEESS--SEEEEETTCSSC
T ss_pred -CCCceeEEEe-----cCCCEEEEEcc--EEEEEECCCCce
Confidence 1234456665 88998888765 899999877654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-11 Score=117.00 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=151.7
Q ss_pred EeEECCCCCEEEE-------eeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 10 LTSFSPALDYFAI-------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 10 ~~~fs~dg~~las-------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++|+++|.++++ +..++.|.+||..+++... +.... ..++ ...+..+.+.+.
T Consensus 22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~------------~~~~-~~~~~~i~~~~~------ 81 (314)
T 1pjx_A 22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPE------------VNGY-GGIPAGCQCDRD------ 81 (314)
T ss_dssp EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCE------------ETTE-ECCEEEEEECSS------
T ss_pred CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecc------------cCCC-CCCCceEEEecC------
Confidence 4589999988888 6778999999988877643 21100 0011 112345555443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEc-cC---C-CCCCEEEEEEecCCCEEEEEeCC---------------CcEE
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SD---C-HPGGVSAISFATHGSCIYSAGAD---------------GMVC 142 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~-~~---~-h~~~v~~~~~s~~g~~l~s~~~d---------------g~v~ 142 (630)
+..+++++..+.|.+||.. ++.. .+ .. + ....+.++++.++|+.+++...+ +.|.
T Consensus 82 ---~g~l~v~~~~~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 82 ---ANQLFVADMRLGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ---SSEEEEEETTTEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred ---CCcEEEEECCCCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 1346666666689999998 6654 22 21 1 12358899999999877776655 5688
Q ss_pred EEeCCCCceeEEeecCCCCeEEEEEc----cCCCEEEEe-C--CeEEEEECC-CCc-----eeeEeecCC-CCeEEEEEe
Q 006808 143 EIDPLTGSLLGKFRASTKGISCMAVS----SDGKMLATA-A--GQLKTFNCS-DHK-----KMQKFSGHP-GAVRFMTFS 208 (630)
Q Consensus 143 iwd~~~~~~~~~~~~~~~~v~~l~~~----p~~~~l~~~-~--g~i~lwd~~-~~~-----~~~~~~~h~-~~v~~l~~s 208 (630)
.||.. ++...... +......++|+ |+++.++++ . +.|++|++. +++ ....+.++. ..+..++++
T Consensus 157 ~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 157 CFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 88865 55433322 33456889999 999765554 3 789999976 443 222334443 567889999
Q ss_pred eCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCC
Q 006808 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQN 283 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~ 283 (630)
++|+.+++.. .++.|.+|+..+++.. ... ..+...+..+++. |++.+|.++ ..++.|..|+...
T Consensus 235 ~~G~l~v~~~-~~~~i~~~d~~~g~~~---~~~--~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANW-GSSHIEVFGPDGGQPK---MRI--RCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEE-TTTEEEEECTTCBSCS---EEE--ECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEc-CCCEEEEEcCCCCcEe---EEE--eCCCCCceeEEEC-----CCCCEEEEEeCCCCeEEEEeCCC
Confidence 9998777665 5789999998765532 122 2222344555666 899855554 4568899998754
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-10 Score=109.70 Aligned_cols=232 Identities=8% Similarity=-0.017 Sum_probs=153.1
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++++++|+++++...++.|.+||.. +.... +.... . ...+..+++.+. +.+
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~---------------~-~~~~~~i~~~~~---------g~l 70 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPT---------------P-DAKVMCLTISSD---------GEV 70 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCc---------------c-cCceeeEEECCC---------CCE
Confidence 455999999987776667899999987 55432 22100 0 112334444432 555
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (630)
.++...++.|..|+.. +.............+.++++.++|..+++...++.|..||. +++.... .......+.++++
T Consensus 71 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 71 WFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 5555557889999987 33321111224567899999999988777777889999998 5554332 2223457899999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
.|+|.++++.. +.|..||. +++.... +..+...+.+++++++|..+++.. .++.|.+|+. ++... .....
T Consensus 149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~ 221 (299)
T 2z2n_A 149 GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEIT----EFKIP 221 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEE----EEECC
Confidence 99998887765 78999998 6654432 233445688999999998665544 5788999998 55422 12222
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.....+..+.+. ++|...++...++.|.+||.
T Consensus 222 ~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 TPNARPHAITAG-----AGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp STTCCEEEEEEC-----STTCEEEEETTTTEEEEEET
T ss_pred CCCCCceeEEEC-----CCCCEEEeccCCceEEEECC
Confidence 222334455665 78886666657789999987
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-10 Score=110.58 Aligned_cols=200 Identities=17% Similarity=0.154 Sum_probs=131.5
Q ss_pred eeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
....|.+.+ +.++++...++.|+.||..++... .+ .+...+.+++++++|+++++ . ++.|.+||..+
T Consensus 16 Egp~w~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 16 ESPVWEEVS--------NSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp EEEEEETTT--------TEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred cCCeEECCC--------CEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 356676653 566777777889999999987653 22 24467999999999995444 4 56799999988
Q ss_pred CceeEEeecC----CCCeEEEEEccCCCEEEEeC-------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC
Q 006808 149 GSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 149 ~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~-------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 211 (630)
++........ ...+..++++|+|+++++.. +.|+.++.. ++.. .+..+......++|+|++
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg 160 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDH 160 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTS
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCC
Confidence 7654333221 23578899999999777652 244444442 3332 233344456899999999
Q ss_pred cEEEEEeeCCCeEEEEEcC--CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 212 KYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
+.|+.+.+.++.|.+|++. ++..........+.........+++. ++|.+.++....+.|..||..+++.+.
T Consensus 161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-----AEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-----TTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-----CCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 9887776667899999974 44321111122222222344556665 888877777777889999987776543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-09 Score=106.78 Aligned_cols=233 Identities=8% Similarity=0.022 Sum_probs=147.4
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..++++++|.++++...++.|..|+.. +.. ..+.... .......+++.+. +.+
T Consensus 60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~----------------~~~~~~~i~~~~~---------g~l 112 (299)
T 2z2n_A 60 MCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN----------------PDSAPYGITEGPN---------GDI 112 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS----------------TTCCEEEEEECTT---------SCE
T ss_pred eeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC----------------cCCCceeeEECCC---------CCE
Confidence 455899999988877768889999976 443 2222100 0112334444332 555
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (630)
+++...++.|.+||. ++.........+...+.++++.++|..+++...++.|..||. +++.... +......+.++++
T Consensus 113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 190 (299)
T 2z2n_A 113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK 190 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE
Confidence 555556788999998 555443322334567899999999987777767789999998 6665432 2333456889999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
+++|.++++.. +.|.+||. +++.... ...+...+.+++++++|+.+++.. .++.|..|+.. +... .+...
T Consensus 191 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~~-g~~~----~~~~~ 263 (299)
T 2z2n_A 191 GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTSN-NIIE----EYPIQ 263 (299)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEETT-TEEE----EEECS
T ss_pred CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECCC-CceE----EEeCC
Confidence 99998777764 78999998 6654322 233456789999999998655543 47889999983 3311 22222
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
........+.+ ++|.+.++.+ .+.+..++..+.
T Consensus 264 ~~~~~~~~i~~------~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 264 IKSAEPHGICF------DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSSCCEEEEEE------CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCccceEEe------cCCCEEEEec-CCcEEEEEcCcc
Confidence 21222233333 3566555544 567777776554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-09 Score=109.43 Aligned_cols=186 Identities=8% Similarity=-0.104 Sum_probs=123.3
Q ss_pred EECCCCCEEEEeeC--CC---cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 12 SFSPALDYFAICSG--DA---RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 12 ~fs~dg~~las~s~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
...|+++++.++.. .+ +|.+||..+++.+..+..... . .+.++|+ +
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spD---------------------------g 77 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-P-NPVAAHS---------------------------G 77 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC-C-CeEECCC---------------------------C
Confidence 45688887776653 22 889999999998877764322 1 4555554 6
Q ss_pred cEEEEEe----------CCCeEEEEEccCCeeeEEccCC------CCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCC
Q 006808 87 SLLVLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLT 148 (630)
Q Consensus 87 ~~l~~~~----------~~g~v~iwd~~~~~~~~~~~~~------h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~ 148 (630)
+.++++. .++.|.+||+.+.+.+.++..+ +......+.|+|+|++|+++.. ++.|.++| .+
T Consensus 78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t 156 (373)
T 2mad_H 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG 156 (373)
T ss_pred CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence 6777775 3567999999988876655322 0123568999999999998874 57899999 99
Q ss_pred CceeEE-eecCCCCeEEEEEccCCCE-EEEeC--CeEEEEECCCCceeeEee-----cCCCC-eEEEEEeeCCcEEEEEe
Q 006808 149 GSLLGK-FRASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFS-----GHPGA-VRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 149 ~~~~~~-~~~~~~~v~~l~~~p~~~~-l~~~~--g~i~lwd~~~~~~~~~~~-----~h~~~-v~~l~~sp~~~~l~~~~ 218 (630)
++.+.. +.... ++.+.|++.. +++.+ |.+.++|. +++...... ....+ .....|.+++..++..+
T Consensus 157 ~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 231 (373)
T 2mad_H 157 GSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV 231 (373)
T ss_pred CCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence 998877 65322 2445565532 23322 89999999 877653321 11122 23356777766555555
Q ss_pred eCCCeEEEEEcCCCc
Q 006808 219 VGERYIALWRTDGVK 233 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~ 233 (630)
..+.+.+.|+....
T Consensus 232 -~~~~v~vid~~~~~ 245 (373)
T 2mad_H 232 -YSGKILQADISAAG 245 (373)
T ss_pred -CCceEEEEeccCCc
Confidence 47889999987653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-10 Score=128.84 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=144.5
Q ss_pred eEeEECCCCCEEEEeeCC-----CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSGD-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
...+|||||++||.++.+ .+|++||+.+|+.+.... .. .....+.|.+. .
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~------------------~~~~~~~wspD-~----- 220 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KW------------------VKFSGLAWLGN-D----- 220 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EE------------------EESCCCEESTT-S-----
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CC------------------ceeccEEEECC-C-----
Confidence 345999999999987653 469999999998754311 00 01124556553 2
Q ss_pred cCCcEEEEEeCCC--------------eEEEEEccCCee--eEEc-cCCCCCCEEEEEEecCCCEEEEEeCCC-----cE
Q 006808 84 LGSSLLVLGTGGG--------------DVLALAVSAGQL--KWRL-SDCHPGGVSAISFATHGSCIYSAGADG-----MV 141 (630)
Q Consensus 84 ~~~~~l~~~~~~g--------------~v~iwd~~~~~~--~~~~-~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~v 141 (630)
.|+.++.++ .|++|++.++.. ...+ ...+...+.++.|+|||++|+..+.++ .|
T Consensus 221 ----~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 221 ----ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTV 296 (741)
T ss_dssp ----EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred ----EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence 245554433 389999987752 1111 123444689999999999988776543 89
Q ss_pred EEEeCCCC--ceeEEeecCCCCeEEEEEccCCCEEEEeC------CeEEEEECCCC--ceeeEeecCCCCeEEEEEeeCC
Q 006808 142 CEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNG 211 (630)
Q Consensus 142 ~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~--~~~~~~~~h~~~v~~l~~sp~~ 211 (630)
++||+.++ ++...+..+...+.... +|+|..|+..+ +.|.+||+.++ .....+..+...+..+.|+ ++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred EEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence 99999877 42455555555555543 48888777664 46999999875 3333344455556677777 44
Q ss_pred cEEEEEeeCCCeEEEEEcC-CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEE-e---cCCcEEEEEcCCcc
Q 006808 212 KYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCYIWYGQNIE 285 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s---~dg~i~iwd~~~~~ 285 (630)
..+++.. .|+..++|.+. .+... ....+.. ...+....++ |++..|+.. + ..+.|++||+.+++
T Consensus 375 ~lv~~~~-~dg~~~l~~~~~~g~~~---~~l~~~~-~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 375 RLFASYI-HDAKSQVLAFDLDGKPA---GAVSLPG-IGSASGLSGR-----PGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSCEE---EECBCSS-SCEEEEEECC-----BTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEE-ECCEEEEEEEeCCCCce---eeccCCC-CeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4444444 68877777554 22211 1122222 2234444454 777655533 2 24789999998775
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-10 Score=114.27 Aligned_cols=233 Identities=11% Similarity=0.021 Sum_probs=148.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..++|+|+|+++++...++.|++||..++......... . ... ++|.+. +..
T Consensus 134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~------------------~~~-ia~~~~---------g~~ 184 (409)
T 3hrp_A 134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-K------------------GGK-PAVTKD---------KQR 184 (409)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-C------------------BCB-CEECTT---------SSE
T ss_pred eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-C------------------CCc-eeEecC---------CCc
Confidence 45699999998888777899999999887765543321 0 111 444443 667
Q ss_pred EEEEeCCC--eEEEEEccCCeeeEEc---cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE----eecCC
Q 006808 89 LVLGTGGG--DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRAST 159 (630)
Q Consensus 89 l~~~~~~g--~v~iwd~~~~~~~~~~---~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~ 159 (630)
|+++..++ .|.+|+...+.....+ ...+...+.+++++|++..|+.+..++.|+.||..++..... ..+..
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence 77777765 7999998776543222 111445678999999656666677888999999987753322 12222
Q ss_pred CCe-E-EEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCC---------------CCeEEEEEeeCCcEEEEEee
Q 006808 160 KGI-S-CMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHP---------------GAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 160 ~~v-~-~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~---------------~~v~~l~~sp~~~~l~~~~~ 219 (630)
..- . .++|+|+ +.++++-. +.|+.|+.... +..+.++. .....++|+|+|+ |+++..
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~ 341 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG 341 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence 222 3 9999995 54444444 79999987543 33343332 3478999999998 445554
Q ss_pred -CCCeEEEEEcCCCccccceeeeeecC------------CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 220 -GERYIALWRTDGVKKQSASCVLAMEH------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 220 -~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.++.|+.|++..+... .+..... .-.....+++. ++|.++++-..+++|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence 5789999997666532 1111000 01123445554 77777777777778877654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-09 Score=109.29 Aligned_cols=241 Identities=12% Similarity=0.089 Sum_probs=151.7
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
++|||||++++++. .++.|.+||..+++.+.++........ ........+.|.|.
T Consensus 71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~-----------~~g~~p~~~~~spD---- 135 (373)
T 2mad_H 71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-----------DVGPYSWMNANTPN---- 135 (373)
T ss_pred eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc-----------ccCCCccceEECCC----
Confidence 49999999998875 367899999999888877653200000 00001113344443
Q ss_pred ccccCCcEEEEEeC--CCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 81 ~~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+++|+++.. ++.|.++| .+++.+.. +.. .. ++.+.|+++ .+++.+.||.+.+||. +++......
T Consensus 136 -----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~ 203 (373)
T 2mad_H 136 -----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL 203 (373)
T ss_pred -----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence 777888774 47799999 99988766 532 12 245556553 4667778999999999 887764322
Q ss_pred -----cCCCCe-EEEEEccCCCEE-EEeC-CeEEEEECCCCc--eeeEeec----------CCCCeEEEEEeeCCcEEEE
Q 006808 157 -----ASTKGI-SCMAVSSDGKML-ATAA-GQLKTFNCSDHK--KMQKFSG----------HPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 157 -----~~~~~v-~~l~~~p~~~~l-~~~~-g~i~lwd~~~~~--~~~~~~~----------h~~~v~~l~~sp~~~~l~~ 216 (630)
....++ ....+.+++..+ ++.. +.+.+.|+.++. .+..+.- .......+.++|+++.+++
T Consensus 204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV 283 (373)
T 2mad_H 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence 112221 234566655443 3333 899999987653 2233221 1123445788999998887
Q ss_pred Eee---------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEe-cCCcEEEEEcCCcc
Q 006808 217 SAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIE 285 (630)
Q Consensus 217 ~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~dg~i~iwd~~~~~ 285 (630)
+.. ..+.|.++|+.+.+.. .....+. ....+.++ |||+ +++++. .++.|.+||..+++
T Consensus 284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv---~~i~~g~---~p~~i~~s-----~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS---SQISLGH---DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EeccCCcccccCCCCeEEEEECCCCEEE---EEEECCC---CcCeEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 652 1357999999887643 1222222 23344555 9999 777777 48999999999988
Q ss_pred cccc
Q 006808 286 ELRN 289 (630)
Q Consensus 286 ~~~~ 289 (630)
.++.
T Consensus 353 vv~~ 356 (373)
T 2mad_H 353 QDQS 356 (373)
T ss_pred EEee
Confidence 7655
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-10 Score=126.18 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=148.7
Q ss_pred EeEECCCCCEEEEee-----CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.++|||||++||.+. ...+|+|||+.+|+.+.... . ......+.|. .
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~-----------------~~k~~~~~Ws-D-------- 184 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--K-----------------DVKFSGISWL-G-------- 184 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--E-----------------EEESCCCEEE-T--------
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--C-----------------CceeccEEEe-C--------
Confidence 348999999999543 23579999999998654211 0 0011244566 3
Q ss_pred CCcEEEEEeCCC-------------eEEEEEccCCee---eEEccCC-CCCCEEEEEEecCCCEEEEEeC----CCcEEE
Q 006808 85 GSSLLVLGTGGG-------------DVLALAVSAGQL---KWRLSDC-HPGGVSAISFATHGSCIYSAGA----DGMVCE 143 (630)
Q Consensus 85 ~~~~l~~~~~~g-------------~v~iwd~~~~~~---~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~----dg~v~i 143 (630)
++.|+.++.+. .|++|++.++.. ...-... |...+.++.|+|||++|+.... ...|++
T Consensus 185 -g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 -NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp -TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred -CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 55566666653 399999987653 1111123 4556889999999998754432 248999
Q ss_pred EeCCCCc-eeEEeecCCCCeEEEEEccCCCEEE-EeC-----CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEE
Q 006808 144 IDPLTGS-LLGKFRASTKGISCMAVSSDGKMLA-TAA-----GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 144 wd~~~~~-~~~~~~~~~~~v~~l~~~p~~~~l~-~~~-----g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l 214 (630)
||+.++. ....+..+....... |+++|..|+ .+. +.|..+++.++.. ...+..|...+. .|++++++|
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9998764 445566565555554 666665554 433 4799999988754 355666666655 899999998
Q ss_pred EEEeeCCC--eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC----CcEEEEEcCCcc
Q 006808 215 LSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET----GVCYIWYGQNIE 285 (630)
Q Consensus 215 ~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~ 285 (630)
+.+...++ .|++|++..+... ...+..... +....++ +++..|+....+ +.++.||+.+++
T Consensus 341 v~~~~~~g~~~l~~~d~~g~~~~----~l~~p~~~~-~~~~~~~-----~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 341 FAEYMVDATARVEQFDYEGKRVR----EVALPGLGS-VSGFNGK-----HDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEEETTEEEEEEECTTSCEEE----EECCSSSSE-EEECCCC-----TTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCeeEEEEEECCCCeeE----EeecCCCce-EEeeecC-----CCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 88775555 6888988754321 222223222 2222233 677766655544 789999987764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-10 Score=112.60 Aligned_cols=239 Identities=13% Similarity=0.135 Sum_probs=156.9
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccc-------cccccccccccccccccccceeeEEe
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
+++||||+++++++ .++.|.+||..+++.+.++.-.. .....+.++++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD--------------- 147 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD--------------- 147 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT---------------
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC---------------
Confidence 49999999887765 36789999999999988875321 12333444444
Q ss_pred cccccccccccCCcEEEEEeC--CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-Cc
Q 006808 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GS 150 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~ 150 (630)
+++++++.. ++.|.++|+.+++.+.++... + . ...+....+.+++.+.||.+.+.++.+ ++
T Consensus 148 ------------Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 148 ------------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECC--S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred ------------CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--C-c-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 777787764 578999999999998777432 1 1 233433456777888899999999876 55
Q ss_pred eeEEeecC----CCCeE-EEEE-ccCCCEEEEeC-CeEEEEECCCCc--eeeEee---------c-CCCCeEEEEEeeCC
Q 006808 151 LLGKFRAS----TKGIS-CMAV-SSDGKMLATAA-GQLKTFNCSDHK--KMQKFS---------G-HPGAVRFMTFSDNG 211 (630)
Q Consensus 151 ~~~~~~~~----~~~v~-~l~~-~p~~~~l~~~~-g~i~lwd~~~~~--~~~~~~---------~-h~~~v~~l~~sp~~ 211 (630)
.......+ ..++. ...| .++|+++++.. |.|++.|..++. .+..+. + .......++++|++
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred EEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 43322111 12222 2456 46887666555 999999997654 232222 0 12234457889999
Q ss_pred cEEEEEeeC---------CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEe-cCCcEEEEE
Q 006808 212 KYVLSSAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY 280 (630)
Q Consensus 212 ~~l~~~~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~dg~i~iwd 280 (630)
+.+++.... .+.|.++|+.+.+.. .....++ ....+.++ +|++ +|++++ .++.|.++|
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---~~i~vg~---~~~~lavs-----~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---AKFEMGH---EIDSINVS-----QDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEEE---EECEEEEC-----SSSSCEEEEEETTTTEEEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEE---EEEECCC---CcceEEEC-----CCCCeEEEEEcCCCCeEEEEE
Confidence 888876421 247999999998754 2222222 23345555 8886 666655 489999999
Q ss_pred cCCcccccccC
Q 006808 281 GQNIEELRNTK 291 (630)
Q Consensus 281 ~~~~~~~~~~~ 291 (630)
..+++.+++.+
T Consensus 361 ~~t~k~~~~i~ 371 (386)
T 3sjl_D 361 AESGEELRSVN 371 (386)
T ss_dssp TTTCCEEEEEC
T ss_pred CCCCcEEEEec
Confidence 99998876654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-09 Score=108.57 Aligned_cols=191 Identities=10% Similarity=0.081 Sum_probs=123.3
Q ss_pred CcEEEE-------EeCCCeEEEEEccCCeeeEEcc---CCCCCCEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCceeEE
Q 006808 86 SSLLVL-------GTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~-------~~~~g~v~iwd~~~~~~~~~~~---~~h~~~v~~~~~s~~-g~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (630)
+.++++ ++.++.|.+||+.+++...... .++...+.+++++++ |+ ++.++..+.|.+||.. ++....
T Consensus 29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~ 106 (314)
T 1pjx_A 29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEI 106 (314)
T ss_dssp SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEEC
T ss_pred CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEE
Confidence 555555 4778899999988887642221 124467999999999 65 4444444579999988 665433
Q ss_pred -eecC----CCCeEEEEEccCCCEEEEeC-----------------CeEEEEECCCCceeeEeecCCCCeEEEEEe----
Q 006808 155 -FRAS----TKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---- 208 (630)
Q Consensus 155 -~~~~----~~~v~~l~~~p~~~~l~~~~-----------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s---- 208 (630)
.... ...+.+++++|+|+++++.. +.|..|+.. ++... +..+......++|+
T Consensus 107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d 184 (314)
T 1pjx_A 107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMND 184 (314)
T ss_dssp CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTT
T ss_pred EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccC
Confidence 2211 23578999999998887765 256677765 54433 33344456889999
Q ss_pred eCCcEEEEEeeCCCeEEEEEcC-CCccccceeeeeecCCc-eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 209 DNGKYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
|+++.++++...++.|.+|++. .+..........+.... .....+++. ++|.++++...++.|.+||..+++
T Consensus 185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc
Confidence 9998777765567899999986 33211111111222221 234445665 888888887788899999876554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-10 Score=127.17 Aligned_cols=194 Identities=11% Similarity=-0.001 Sum_probs=124.6
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCC-C----eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCc-
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM- 140 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~-g----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~- 140 (630)
.+..+.|.|. ++.|+.+..+ | .|++||+.+++.+.... +...+.+++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~~SPD---------G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 164 ALDAWAASDD---------GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPK 231 (741)
T ss_dssp EEEEEEECTT---------SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC-
T ss_pred EEEeEEECCC---------CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcc
Confidence 4556677754 5666665543 3 49999999998754321 1122357899999 88888776554
Q ss_pred -------------EEEEeCCCCce--eEEeec--CCCCeEEEEEccCCCEEEEeC--C-----eEEEEECCCC--ceeeE
Q 006808 141 -------------VCEIDPLTGSL--LGKFRA--STKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDH--KKMQK 194 (630)
Q Consensus 141 -------------v~iwd~~~~~~--~~~~~~--~~~~v~~l~~~p~~~~l~~~~--g-----~i~lwd~~~~--~~~~~ 194 (630)
|++|++.+++. ...+.. +...+..+.|+|||++|+..+ + .|++||+.++ ++...
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 311 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA 311 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence 89999987753 223333 223588999999999888765 2 8999999877 32455
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeC---CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
+..+...+.... +|+|..|+..+.. .+.|.+|++.++. .. ......+....+..+.+. ++.++++..
T Consensus 312 l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~~~l~~~~~~------~~~lv~~~~ 381 (741)
T 1yr2_A 312 LIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESKDNLESVGIA------GNRLFASYI 381 (741)
T ss_dssp EECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCSSEEEEEEEE------BTEEEEEEE
T ss_pred ecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCCCeEEEEEEE------CCEEEEEEE
Confidence 655655555553 5889888887632 3459999987742 10 111223333334333332 456777888
Q ss_pred cCCcEEEEEcC
Q 006808 272 ETGVCYIWYGQ 282 (630)
Q Consensus 272 ~dg~i~iwd~~ 282 (630)
.+|..+||...
T Consensus 382 ~dg~~~l~~~~ 392 (741)
T 1yr2_A 382 HDAKSQVLAFD 392 (741)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 89987777543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-09 Score=102.76 Aligned_cols=232 Identities=10% Similarity=0.036 Sum_probs=151.2
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.+++++++|+++++...++.|.+||.. ++... +... .. ......+++.+. +.+
T Consensus 23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~---------------~~-~~~~~~i~~~~~---------g~l 75 (300)
T 2qc5_A 23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP---------------TP-DAKVMCLIVSSL---------GDI 75 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS---------------ST-TCCEEEEEECTT---------SCE
T ss_pred ceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC---------------CC-CCcceeEEECCC---------CCE
Confidence 455899999988877778999999987 65443 2110 00 112334444322 555
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (630)
.++...++.|..||.. ++............+.++++.++|+.+++...++.|..||.. ++.... +......+.++++
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~ 153 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL 153 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence 5555557889999988 554322222234679999999999887777668899999987 654422 2323457899999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
.|+|+++++.. +.|..|+. +++.... ...+...+.++++.++|..+++.. ..+.|.+|+. .+... .....
T Consensus 154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~ 226 (300)
T 2qc5_A 154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEIS----EYDIP 226 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEE----EEECC
Confidence 99999777664 68999998 5554331 223445688999999997665544 4678999998 33322 11222
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
........+++. ++|...++...++.|..|+.
T Consensus 227 ~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 TPNARPHAITAG-----KNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEEC-----STTCEEEEETTTTEEEEECT
T ss_pred CCCCCceEEEEC-----CCCCEEEeccCCCeEEEECC
Confidence 222334455565 78886666656788999986
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-10 Score=110.30 Aligned_cols=194 Identities=8% Similarity=-0.026 Sum_probs=131.2
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++++++|+++++.. ++.|.+||..++... .+... + ......+++.+. +.++
T Consensus 71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~---------------~--~~~p~~i~~~~~---------g~l~ 122 (270)
T 1rwi_B 71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFD---------------G--LNYPEGLAVDTQ---------GAVY 122 (270)
T ss_dssp CEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCC---------------S--CSSEEEEEECTT---------CCEE
T ss_pred eeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecC---------------C--cCCCcceEECCC---------CCEE
Confidence 459999999666665 889999998755432 22110 0 012334454432 5556
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEcc
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p 169 (630)
++...++.|.+|+..+....... ......+.+++++++|+.+++...++.|.+||............+...+.+++++|
T Consensus 123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 201 (270)
T 1rwi_B 123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 201 (270)
T ss_dssp EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC
Confidence 66667788999986655443222 22334678999999998777776788999999877655433333335789999999
Q ss_pred CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 170 ~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+|.++++.. +.|.+|+............+...+.+++++|+|+.+++.. .++.|+++++...+
T Consensus 202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLEHH 266 (270)
T ss_dssp TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCGGG
T ss_pred CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCCcc
Confidence 997777764 7899999866543322223335689999999998655554 68999999987754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-09 Score=108.14 Aligned_cols=276 Identities=14% Similarity=0.016 Sum_probs=164.3
Q ss_pred CcEEEEEeC-----CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCc
Q 006808 86 SSLLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS 150 (630)
Q Consensus 86 ~~~l~~~~~-----~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~dg~v~iwd~~~~~ 150 (630)
+..+++... ++.|.++|..+++.+.++..+.. + . ++++|+|+++++++ .++.|.+||..+++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 666777765 57899999999999877765433 3 4 99999999988775 36789999999999
Q ss_pred eeEEeecCC-------CCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 151 LLGKFRAST-------KGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 151 ~~~~~~~~~-------~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.+.++.... .....++|+|||++++++. +.|.++|+.+++.+.++.... + ...+....+.+++.+
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~- 196 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHC- 196 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEE-
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEEC-
Confidence 988876432 2456799999999888764 689999999999988885322 1 223333345555655
Q ss_pred CCCeEEEEEcCC-Cccccceeeeeec-CCcee-eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc--cccccC---
Q 006808 220 GERYIALWRTDG-VKKQSASCVLAME-HPAVF-MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--ELRNTK--- 291 (630)
Q Consensus 220 ~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~--- 291 (630)
.||.+.+.++.. ++... .....+. ..... ....+.. ++|++++ .+.+|.++++|..+.. .+....
T Consensus 197 ~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~-----~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQ-----KAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp TTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEET-----TTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred CCCCEEEEECCCCCeEEE-eecceeccccccccccceeEc-----CCCcEEE-EeCCCEEEEEECCCCcceeecceeccc
Confidence 688888888876 33210 0000111 00111 1111112 5775554 5668999999986553 222111
Q ss_pred c----eeEEee--ccCCCcccccchhhhhhhccccc---cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc
Q 006808 292 A----TKILSS--SEDVNSKSQKSATAAIFAAKLQD---IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV 362 (630)
Q Consensus 292 ~----~~~~~~--~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~ 362 (630)
. ..+... ....+.++++ .++.+..++ .-+.....+++.+- .....+..+..- ...+++++++||+
T Consensus 270 ~~~~~~g~~p~g~q~~a~~~~~~----~lyV~~~~~~~~~hk~~~~~V~viD~-~t~kv~~~i~vg-~~~~~lavs~D~~ 343 (386)
T 3sjl_D 270 EAERADGWRPGGWQQVAYHRALD----RIYLLVDQRDEWRHKTASRFVVVLDA-KTGERLAKFEMG-HEIDSINVSQDEK 343 (386)
T ss_dssp HHHHHTTEEECSSSCEEEETTTT----EEEEEEEECCTTCTTSCEEEEEEEET-TTCCEEEEEEEE-EEECEEEECSSSS
T ss_pred cccccccccCCCcceeeECCCCC----eEEEEeccccccccCCCCCEEEEEEC-CCCeEEEEEECC-CCcceEEECCCCC
Confidence 0 000000 0011233333 444433211 11111234555553 333444444332 2678999999997
Q ss_pred -eeeccccceeccccceecc
Q 006808 363 -LLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 363 -~l~~s~s~d~~~~~w~~~~ 381 (630)
.|.++...++++.+.+...
T Consensus 344 ~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 344 PLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp CEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEcCCCCeEEEEECCC
Confidence 5525455577777777643
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-11 Score=118.86 Aligned_cols=183 Identities=8% Similarity=0.068 Sum_probs=126.7
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
+++.+ ++++...++++|+.+ .++||++.+..... ...... +.+.....+ .. ++.++| +
T Consensus 39 ~~nlL--ais~~~gll~a~~~~-~l~v~~~~~l~~~~--~~~~~~-----~~~~~~~~l-p~-V~~l~f---d------- 96 (388)
T 1xip_A 39 SLQNL--DISNSKSLFVAASGS-KAVVGELQLLRDHI--TSDSTP-----LTFKWEKEI-PD-VIFVCF---H------- 96 (388)
T ss_dssp CCBCE--EEETTTTEEEEEETT-EEEEEEHHHHHHHH--HSSSCC-----CCCSEEEEC-TT-EEEEEE---E-------
T ss_pred cccEE--EEcCCCCEEEEeCCC-EEEEEEhhHhhhhh--cccccc-----ccceEEeeC-CC-eeEEEE---C-------
Confidence 46444 999999999999987 56679875443100 000000 111000011 22 677777 2
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
+.+|+++ .+|.|++||+.+....... ..|..++.++.+.+. .+++++.||.+.+||+.+++... +...|+|
T Consensus 97 -~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~ 167 (388)
T 1xip_A 97 -GDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTS 167 (388)
T ss_dssp -TTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred -CCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence 7788888 7899999999876543333 356778888887654 38889999999999999887653 3458999
Q ss_pred EEEccCCCEEEEeCCeEEEEECCCCce--eeEe------e---cCCCCeEEEEEeeCCcEEEEEe
Q 006808 165 MAVSSDGKMLATAAGQLKTFNCSDHKK--MQKF------S---GHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 165 l~~~p~~~~l~~~~g~i~lwd~~~~~~--~~~~------~---~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
++|+|+|..+..+.|++++|+...+.. ..++ . +|...|.+|.|.+++.++++-+
T Consensus 168 v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 168 FDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999943333339999999877765 5555 2 3778899999999999888743
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-08 Score=100.06 Aligned_cols=230 Identities=10% Similarity=0.034 Sum_probs=145.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..++++++|.++++...++.|.+||.. ++.. .+.... . ......+++.+. +.+
T Consensus 65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---------------~-~~~~~~i~~~~~---------g~l 117 (300)
T 2qc5_A 65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---------------P-DSGPYGITEGLN---------GDI 117 (300)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS---------------T-TCCEEEEEECST---------TCE
T ss_pred eeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC---------------C-CCCCccceECCC---------CCE
Confidence 445889999887777667889999987 6543 222100 0 112334444432 555
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-eecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~ 167 (630)
+++...++.|..|+.. ++............+.++++.++|+.+++...++.|..||. +++.... .......+.++++
T Consensus 118 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 195 (300)
T 2qc5_A 118 WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITS 195 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEE
Confidence 5555557889999988 55442222234567899999999996666666788999998 5654432 2223446889999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME 244 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 244 (630)
+++|.++++.. +.|.+|+. +++.... +..+...+.+++++++|+.+++.. .++.|..|+.. +... .+...
T Consensus 196 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~-g~~~----~~~~~ 268 (300)
T 2qc5_A 196 GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW-GANQIGRITND-NTIQ----EYQLQ 268 (300)
T ss_dssp CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEECTT-SCEE----EEECC
T ss_pred CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc-CCCeEEEECCC-CcEE----EEECC
Confidence 99998777765 68999998 5543332 233456788999999998655543 46889999983 3321 22222
Q ss_pred CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
........+.+. ++|...++.. . .|..++.
T Consensus 269 ~~~~~~~~i~~~-----~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 269 TENAEPHGITFG-----KDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp STTCCCCCEEEC-----TTSCEEEECS-S-EEEEEEE
T ss_pred ccCCccceeEeC-----CCCCEEEEcc-C-ceEEeCC
Confidence 222223444554 7777555544 4 6766664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-09 Score=103.06 Aligned_cols=192 Identities=13% Similarity=0.016 Sum_probs=124.9
Q ss_pred eeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 006808 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~ 148 (630)
....|.+.. +.++++...++.|..||..+++.. .+. +...+.+++|+++|+++++. .+ .|.+||..+
T Consensus 52 egp~~~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 52 EGPTFDPAS--------GTAWWFNILERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp EEEEEETTT--------TEEEEEEGGGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred cCCeEeCCC--------CEEEEEECCCCEEEEEECCCCcEE-EEE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence 345676543 556777777889999999988654 221 34579999999999876654 44 499999988
Q ss_pred CceeEEeecC----CCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 149 GSLLGKFRAS----TKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 149 ~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
++........ ...+..++++|+|+++++.. +.|+.++ +++.. .+..+......++|+|+++.++.
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEE
Confidence 8754332211 23588999999999777653 3566666 45433 33333345678999999998877
Q ss_pred EeeCCCeEEEEEcC--CC-ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 217 SAVGERYIALWRTD--GV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 217 ~~~~d~~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+...++.|.+|++. ++ ..........+.........+++. ++|.+.++...++.|.+|+.
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d-----~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC-----CCCCEEEEEeCCCEEEEECC
Confidence 66567899999986 44 321111122222222234455555 77877776666678888876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-09 Score=108.67 Aligned_cols=237 Identities=13% Similarity=0.133 Sum_probs=156.1
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEeccc-------ccccccccccccccccccccceeeEEe
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADI-------ASTETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
++|||||++++++. .++.|.++|..+++.+.++.-. ...+..+.++++
T Consensus 123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD--------------- 187 (426)
T 3c75_H 123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD--------------- 187 (426)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT---------------
T ss_pred eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence 49999999888775 3678999999999998877532 122334444444
Q ss_pred cccccccccccCCcEEEEEeC--CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCc
Q 006808 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS 150 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~iwd~~~~~ 150 (630)
+++++++.. ++.|.+.|+.+++.+.++..+. . ....|+| ..+++.+.||.+.+.++.+++
T Consensus 188 ------------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 188 ------------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred ------------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 777888774 5789999999999887765322 1 2334433 556777788888888886665
Q ss_pred eeEE----eecCCCCe-EEEEEccCCCEEEEeC--CeEEEEECCCCce--eeEeec----------CCCCeEEEEEeeCC
Q 006808 151 LLGK----FRASTKGI-SCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG----------HPGAVRFMTFSDNG 211 (630)
Q Consensus 151 ~~~~----~~~~~~~v-~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~--~~~~~~----------h~~~v~~l~~sp~~ 211 (630)
.... +.....++ ..+.|.+++..++... +.+.+.|...... +..+.- .......++|+|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 5422 22222221 2356788887766655 8999999865532 111110 01122236899999
Q ss_pred cEEEEEee---------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC-EEEEEe-cCCcEEEEE
Q 006808 212 KYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY 280 (630)
Q Consensus 212 ~~l~~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s-~dg~i~iwd 280 (630)
++++++.. ..+.|.++|+.+.+.. .....+. ....+.++ |||+ ++++.. .++.|.++|
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv---~~I~vg~---~P~gia~s-----pDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI---NKIELGH---EIDSINVS-----QDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEEE---EECEEEEC-----CSSSCEEEEEETTTTEEEEEE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCCeEE---EEEECCC---CcCeEEEc-----cCCCEEEEEEcCCCCeEEEEE
Confidence 88777642 1347999999998744 2222222 23444555 9998 888888 489999999
Q ss_pred cCCccccccc
Q 006808 281 GQNIEELRNT 290 (630)
Q Consensus 281 ~~~~~~~~~~ 290 (630)
..+++.++..
T Consensus 400 ~~t~kvv~tI 409 (426)
T 3c75_H 400 AATGEELRSV 409 (426)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEe
Confidence 9999887654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-09 Score=118.53 Aligned_cols=241 Identities=17% Similarity=0.201 Sum_probs=156.1
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEeccc-cccc-ccccccccccccccccceeeEEecccccccccccCCcEEEEEe
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTE-TTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT 93 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~ 93 (630)
++..+++++.|+.|..+|..+|+.+..+... .... .....+|. + . +..+++++
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~------------v-~------------~g~v~vg~ 174 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPR------------V-V------------NGKVVIGN 174 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCE------------E-E------------TTEEEECC
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcE------------E-E------------CCEEEEEe
Confidence 4567888889999999999999998877642 1000 00000110 0 0 33455554
Q ss_pred C------CCeEEEEEccCCeeeEEccCCC-C-----------------------------CCEEEEEEecCCCEEEEEeC
Q 006808 94 G------GGDVLALAVSAGQLKWRLSDCH-P-----------------------------GGVSAISFATHGSCIYSAGA 137 (630)
Q Consensus 94 ~------~g~v~iwd~~~~~~~~~~~~~h-~-----------------------------~~v~~~~~s~~g~~l~s~~~ 137 (630)
. +|.|..||..+|+.++++.... . .....+++.|++..++.++.
T Consensus 175 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~ 254 (689)
T 1yiq_A 175 GGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG 254 (689)
T ss_dssp BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred CCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC
Confidence 3 6889999999999987764211 0 01125788998889999887
Q ss_pred CCc-------------------EEEEeCCCCceeEEeecCC---------CCeEEEEEccCCC---EEEEeC--CeEEEE
Q 006808 138 DGM-------------------VCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLKTF 184 (630)
Q Consensus 138 dg~-------------------v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~~---~l~~~~--g~i~lw 184 (630)
++. |..||..+|+.+..++... .++.......+|+ .++.++ |.++++
T Consensus 255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l 334 (689)
T 1yiq_A 255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI 334 (689)
T ss_dssp CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence 764 9999999999988876421 1222223333564 666766 899999
Q ss_pred ECCCCceeeEeecCC-C--------------------------------------CeEEEEEeeCCcEEEEEeeC-----
Q 006808 185 NCSDHKKMQKFSGHP-G--------------------------------------AVRFMTFSDNGKYVLSSAVG----- 220 (630)
Q Consensus 185 d~~~~~~~~~~~~h~-~--------------------------------------~v~~l~~sp~~~~l~~~~~~----- 220 (630)
|..+|+.+....-.. . ....++|+|+...+++....
T Consensus 335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 414 (689)
T 1yiq_A 335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY 414 (689)
T ss_dssp ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee
Confidence 999999874332110 0 01236888888777765321
Q ss_pred ---------------------------------------CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccC
Q 006808 221 ---------------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD 261 (630)
Q Consensus 221 ---------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (630)
++.|+.||+.+++.. .......+ ..... +.
T Consensus 415 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~---W~~~~~~~--~~~g~-~~----- 483 (689)
T 1yiq_A 415 EHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA---WEVPYVTI--FNGGT-LS----- 483 (689)
T ss_dssp ECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE---EEEEESSS--CCCCE-EE-----
T ss_pred eeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE---eEccCCCC--ccCcc-ce-----
Confidence 367999999998754 22222221 11111 11
Q ss_pred CCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 262 DAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 262 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
..+..+++++.||.++.||.++|+.+...+.
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 4577899999999999999999998876543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.19 E-value=9.9e-09 Score=100.67 Aligned_cols=219 Identities=11% Similarity=0.067 Sum_probs=133.6
Q ss_pred eEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
..|+|++ .++++...++.|..||..++... .+.. ...+.++++.+. +. +
T Consensus 18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-------------------~~~~~~i~~~~d---------G~-l 67 (297)
T 3g4e_A 18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM-------------------DAPVSSVALRQS---------GG-Y 67 (297)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC-------------------SSCEEEEEEBTT---------SS-E
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC-------------------CCceEEEEECCC---------CC-E
Confidence 4788865 45556666899999999877653 2221 113445555543 55 4
Q ss_pred EEEeCCCeEEEEEccCCeeeEEcc--CC-CCCCEEEEEEecCCCEEEEEeC-----------CCcEEEEeCCCCceeEEe
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~--~~-h~~~v~~~~~s~~g~~l~s~~~-----------dg~v~iwd~~~~~~~~~~ 155 (630)
+++. ++.|.+||..+++...... .+ ....+.+++++|+|+++++... .+.|..++.. ++... +
T Consensus 68 ~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~ 144 (297)
T 3g4e_A 68 VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-Y 144 (297)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-E
T ss_pred EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-E
Confidence 4555 5679999998887532211 11 1235889999999996655422 2344444432 33332 2
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC---CeEEEEEC--CCCce-----eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNC--SDHKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~--~~~~~-----~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.........++|+|+++.|+.+. +.|.+|++ .++.. ...+..+...+..+++.++|+..++.. ..+.|.
T Consensus 145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~ 223 (297)
T 3g4e_A 145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVI 223 (297)
T ss_dssp EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEE
T ss_pred eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEE
Confidence 22334568899999998776554 78999987 45543 222333445678999999997666554 577899
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
+||..+++.. ..+..+...+.+++|. -|+++.|..++.
T Consensus 224 ~~d~~tG~~~-----~~i~~p~~~~t~~~f~----g~d~~~L~vt~~ 261 (297)
T 3g4e_A 224 RLDPVTGKRL-----QTVKLPVDKTTSCCFG----GKNYSEMYVTCA 261 (297)
T ss_dssp EECTTTCCEE-----EEEECSSSBEEEEEEE----SGGGCEEEEEEB
T ss_pred EEcCCCceEE-----EEEECCCCCceEEEEe----CCCCCEEEEEcC
Confidence 9999877633 2223333334555553 156666655554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.3e-09 Score=104.10 Aligned_cols=234 Identities=11% Similarity=-0.013 Sum_probs=143.1
Q ss_pred EEC--CCCCEEEEee-CCCcEEEEECCCC----cEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 12 SFS--PALDYFAICS-GDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 12 ~fs--~dg~~las~s-~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.++ +++++|+..+ .+++|.|+|+.+. +...++.... +. ... +. . ...-+...+.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~--~~----~~~---g~-s-~Ph~~~~~pd-------- 148 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE--VK----KVS---GY-S-RLHTVHCGPD-------- 148 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH--HH----HHH---CE-E-EEEEEEECSS--------
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh--cc----ccc---CC-C-cccceeECCC--------
Confidence 457 8888776554 5899999999755 4454442000 00 000 00 0 0000111111
Q ss_pred CCcEEEEEeCC------CeEEEEEccCCeeeEEccCC-CC-CCEEEEEEecCCCEEEEEe-------------------C
Q 006808 85 GSSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HP-GGVSAISFATHGSCIYSAG-------------------A 137 (630)
Q Consensus 85 ~~~~l~~~~~~------g~v~iwd~~~~~~~~~~~~~-h~-~~v~~~~~s~~g~~l~s~~-------------------~ 137 (630)
+ +++++..+ |.|.++|..+.+.+.++..+ .. .--..+.|+|+++.+++.. .
T Consensus 149 -G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~ 226 (462)
T 2ece_A 149 -A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY 226 (462)
T ss_dssp -C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred -e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence 4 55555555 67999999999998777533 21 2245688999999888884 3
Q ss_pred CCcEEEEeCCCCceeEEeecCC--CCeEEEEE--ccCCCEEEEeC--------CeEEEEECCCCce--eeEe--ecC---
Q 006808 138 DGMVCEIDPLTGSLLGKFRAST--KGISCMAV--SSDGKMLATAA--------GQLKTFNCSDHKK--MQKF--SGH--- 198 (630)
Q Consensus 138 dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~--~p~~~~l~~~~--------g~i~lwd~~~~~~--~~~~--~~h--- 198 (630)
..+|.+||+.+++.+.++.... .....+.| +|+++++.+++ ++|.+|....+.. .+.+ ...
T Consensus 227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 6899999999998888887632 23455656 99998776643 5777765544421 1111 100
Q ss_pred -------------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC--------ce----eeeeE
Q 006808 199 -------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--------AV----FMDCR 253 (630)
Q Consensus 199 -------------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--------~~----~~~~~ 253 (630)
......|.+||||++|+++....+.|.+||+..............+.. +. ....+
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~ 386 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQML 386 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCE
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEE
Confidence 234678999999999999987788999999864321111111112100 00 12344
Q ss_pred EecCCccCCCCCEEEEEe
Q 006808 254 CIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s 271 (630)
.++ |||++|++++
T Consensus 387 ~lS-----pDGk~LyVaN 399 (462)
T 2ece_A 387 EIS-----RDGRRVYVTN 399 (462)
T ss_dssp EEC-----TTSSEEEEEC
T ss_pred EEc-----CCCCEEEEEc
Confidence 455 9999999988
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-09 Score=108.06 Aligned_cols=185 Identities=8% Similarity=-0.060 Sum_probs=122.7
Q ss_pred CCCCEEEEeeC-C----CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 15 PALDYFAICSG-D----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 15 ~dg~~las~s~-d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
|+++++++... + +.|.++|..+++.+.++.....+ .+.++|+ ++.+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpD---------------------------gk~l 132 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAED---------------------------GSFF 132 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT---------------------------SSCE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCC---------------------------CCEE
Confidence 46776665554 3 69999999999999888743322 4555554 5556
Q ss_pred EEEe----------CCCeEEEEEccCCeeeEEccCC------CCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCce
Q 006808 90 VLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL 151 (630)
Q Consensus 90 ~~~~----------~~g~v~iwd~~~~~~~~~~~~~------h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~ 151 (630)
+++. .++.|.++|..+++.+.++..+ .......+.|+|||++++++.. ++.|.+.|+.+++.
T Consensus 133 yVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 133 AQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 6665 3567999999999887666422 1124567899999999998874 57899999999999
Q ss_pred eEEeecCCCCeEEEEEccCC-CE-EEEeC-CeEEEEECCCCceeeE----eecCCCCe-EEEEEeeCCcEEEEEeeCCCe
Q 006808 152 LGKFRASTKGISCMAVSSDG-KM-LATAA-GQLKTFNCSDHKKMQK----FSGHPGAV-RFMTFSDNGKYVLSSAVGERY 223 (630)
Q Consensus 152 ~~~~~~~~~~v~~l~~~p~~-~~-l~~~~-g~i~lwd~~~~~~~~~----~~~h~~~v-~~l~~sp~~~~l~~~~~~d~~ 223 (630)
+.++..... ....|++ .. ++.+. |.+.+.+..+++.... +.....++ ..+.|.+++..++..+ ..+.
T Consensus 213 v~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~ 287 (426)
T 3c75_H 213 DRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGK 287 (426)
T ss_dssp EEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSE
T ss_pred EEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCc
Confidence 888875321 2333433 22 22222 6666667755554422 21111221 2356789988877776 5789
Q ss_pred EEEEEcCCCc
Q 006808 224 IALWRTDGVK 233 (630)
Q Consensus 224 i~vwd~~~~~ 233 (630)
+.+.|.....
T Consensus 288 V~ViD~~~~~ 297 (426)
T 3c75_H 288 IFQADLTAEG 297 (426)
T ss_dssp EEEEEECSSC
T ss_pred EEEEeccCCc
Confidence 9999987654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-09 Score=116.05 Aligned_cols=242 Identities=16% Similarity=0.204 Sum_probs=159.6
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEeccc-ccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (630)
++..+++++.|+.|..+|..+|+.+..+... .........+.. . + .+..+++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p---------~--v-------------~~~~v~v~~~ 182 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP---------R--V-------------FKGKVIIGNG 182 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC---------E--E-------------ETTEEEECCB
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc---------E--E-------------ECCEEEEEec
Confidence 4567888888999999999999999887643 110000000000 0 0 0445566654
Q ss_pred ------CCeEEEEEccCCeeeEEccCCCCC-------------------------------CEEEEEEecCCCEEEEEeC
Q 006808 95 ------GGDVLALAVSAGQLKWRLSDCHPG-------------------------------GVSAISFATHGSCIYSAGA 137 (630)
Q Consensus 95 ------~g~v~iwd~~~~~~~~~~~~~h~~-------------------------------~v~~~~~s~~g~~l~s~~~ 137 (630)
+|.|+.||..+|+.++++...... ....+++.|++..++.++.
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 688999999999998776432111 1135788999999988876
Q ss_pred CC-------------------cEEEEeCCCCceeEEeecCC---------CCeEEEEEccCC---CEEEEeC--CeEEEE
Q 006808 138 DG-------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDG---KMLATAA--GQLKTF 184 (630)
Q Consensus 138 dg-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~~---~~l~~~~--g~i~lw 184 (630)
++ .|..+|..+|+.+..++... .....+....+| ..++.++ |.++++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l 342 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL 342 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence 64 59999999999988776421 122233344467 5677776 899999
Q ss_pred ECCCCceeeEeecCCC-----------Ce------------------------EEEEEeeCCcEEEEEeeC---------
Q 006808 185 NCSDHKKMQKFSGHPG-----------AV------------------------RFMTFSDNGKYVLSSAVG--------- 220 (630)
Q Consensus 185 d~~~~~~~~~~~~h~~-----------~v------------------------~~l~~sp~~~~l~~~~~~--------- 220 (630)
|..+|+.+..+..... ++ ..++|+|++..+++....
T Consensus 343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 9999998766542110 01 156889988887775421
Q ss_pred ---------------------------------CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEE
Q 006808 221 ---------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV 267 (630)
Q Consensus 221 ---------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (630)
.+.|..||+.+++.. ....... ........ ..+..+
T Consensus 423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~---W~~~~~~--~~~~g~~~------~~g~~v 491 (677)
T 1kb0_A 423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA---WSVEHVS--PWNGGTLT------TAGNVV 491 (677)
T ss_dssp TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE---EEEEESS--SCCCCEEE------ETTTEE
T ss_pred ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE---eecCCCC--CCcCcceE------eCCCEE
Confidence 267999999998754 2222222 11111111 457788
Q ss_pred EEEecCCcEEEEEcCCcccccccCc
Q 006808 268 LAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 268 ~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
++++.||.+++||..+++.+..+..
T Consensus 492 ~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 492 FQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCcEEEEECCCCceeeeeeC
Confidence 8899999999999999998876643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-08 Score=97.35 Aligned_cols=218 Identities=14% Similarity=0.105 Sum_probs=132.0
Q ss_pred EeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+|+|++. ++++...++.|.+||..+++... +.. ...+.++.|.+. +.+
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-------------------~~~v~~i~~~~d---------g~l 103 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-------------------PFMGSALAKISD---------SKQ 103 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-------------------SSCEEEEEEEET---------TEE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-------------------CCcceEEEEeCC---------CeE
Confidence 458999754 55566668899999998776432 211 113456666543 444
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccC--CC-CCCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSD--CH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~--~h-~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+ +++.+ .|.+||..+++....... +. ...+.+++++|+|+++++... .+.|..++ +++.. .+....
T Consensus 104 ~-v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 L-IASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp E-EEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred E-EEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 4 44544 499999988875422211 11 235899999999987665432 24566666 45443 232233
Q ss_pred CCeEEEEEccCCCEEEEeC---CeEEEEECC--CC-ce-----eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DH-KK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g~i~lwd~~--~~-~~-----~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.....++|+|+++.++.+. +.|.+|++. ++ .. ...+......+..+++.++|.++++.. .++.|.+|+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence 4567899999998776553 789999986 55 32 222233345578899999998766654 467899999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
.. ++.. ..+..+...+.+++|. .+++..|++++.
T Consensus 258 ~~-g~~~-----~~i~~~~~~~~~~af~----g~d~~~L~vt~~ 291 (326)
T 2ghs_A 258 TD-GNHI-----ARYEVPGKQTTCPAFI----GPDASRLLVTSA 291 (326)
T ss_dssp TT-CCEE-----EEEECSCSBEEEEEEE----STTSCEEEEEEB
T ss_pred CC-CCEE-----EEEECCCCCcEEEEEe----cCCCCEEEEEec
Confidence 84 3321 1222233334455552 156666655544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=109.52 Aligned_cols=144 Identities=12% Similarity=0.145 Sum_probs=104.9
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCe---------eeEEccCCCCCCEEEEEEecCCCEEEEEeCC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGAD 138 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~---------~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d 138 (630)
+..+++.+. ..++++|+.+ .+.+|++.... ........+.. |+.++| ++++|+++ .+
T Consensus 40 ~nlLais~~---------~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~ 105 (388)
T 1xip_A 40 LQNLDISNS---------KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TR 105 (388)
T ss_dssp CBCEEEETT---------TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ES
T ss_pred ccEEEEcCC---------CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cC
Confidence 455565554 6677888776 45669875433 11111113556 999999 88999998 88
Q ss_pred CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
+.|++||+.+.........+..++.++.+.+.. ++++.+ |.|.+||+.++.... +...|++++|||+| ++.+
T Consensus 106 ~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg 178 (388)
T 1xip_A 106 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL 178 (388)
T ss_dssp SEEEEEESSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE
T ss_pred CcEEEEEchhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE
Confidence 999999998877666677777888888877653 333333 999999999887643 45689999999999 4555
Q ss_pred eeCCCeEEEEEcCCCc
Q 006808 218 AVGERYIALWRTDGVK 233 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~ 233 (630)
. .||.+++|+.....
T Consensus 179 ~-~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 179 L-KDRSFQSFAWRNGE 193 (388)
T ss_dssp E-TTSCEEEEEEETTE
T ss_pred E-cCCcEEEEcCCCcc
Confidence 5 69999999887765
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-08 Score=101.97 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=121.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEe----ecCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF----RAST 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~----~~~~ 159 (630)
+.++++...++.|++||+.++....... .. .... ++|+++++.+++++.++ .|.+|+...+.....+ ....
T Consensus 142 g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 142 NTVLAYQRDDPRVRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred CCEEEEecCCCcEEEEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence 5556666667889999999887653332 22 2233 99999999999888766 7999987766544444 2134
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE----eecCCCCe--EEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK----FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~----~~~h~~~v--~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..+.+++++|++..|+++. +.|+.||..++..... ..++...- ..++|+|++..|+++....+.|+.|+...
T Consensus 219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 5678899999444444455 7899999987753222 12222222 39999997556666665688999998765
Q ss_pred CccccceeeeeecCC--------------ceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcc
Q 006808 232 VKKQSASCVLAMEHP--------------AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE 285 (630)
Q Consensus 232 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~ 285 (630)
.... . ..+. -.....+++. |+|.++++-+ .+++|+.|+..++.
T Consensus 299 ~~~~----~--~g~~~~~g~~dg~~~~~~~~~P~gia~d-----~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 299 ECEW----F--CGSATQKTVQDGLREEALFAQPNGMTVD-----EDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp CEEE----E--EECTTCCSCBCEEGGGCBCSSEEEEEEC-----TTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CEEE----E--EeCCCCCCcCCCcccccEeCCCeEEEEe-----CCCCEEEEeCCCCCEEEEEECCCCE
Confidence 3211 1 1111 0123445565 8899777777 78899999976654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-11 Score=118.93 Aligned_cols=183 Identities=10% Similarity=0.058 Sum_probs=100.9
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..+++++.||.|+.||..+|+.+..+.. ..+.+..+.. ++..+++++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~---------------------------~g~~~v~~s~d 58 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV---------------------------EEPAFLPDPND 58 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------------------CCEEECTTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc---------------------------CCCEEEEeCCC
Confidence 578999999999999999999999987764 1111100000 04466777899
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEE-EEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~-~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
|.|+.||..+|+.++.........+. +..+. .+..+++++.++.++.||..+|+.+..+..+. ...++|++..+
T Consensus 59 g~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v 133 (369)
T 2hz6_A 59 GSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLL 133 (369)
T ss_dssp CCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------E
T ss_pred CEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEE
Confidence 99999999999876655321110010 00111 34567888889999999999999887776543 23456777777
Q ss_pred EEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC---cEEEEEeeCCCeEEEEEcCCCccc
Q 006808 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~---~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
++++ +.|+.||..+|+.+..+..+. .....+.++. ..+++++ .++.|+.||..+++..
T Consensus 134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL 196 (369)
T ss_dssp EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE
T ss_pred EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE
Confidence 7776 899999999998776654221 1222333332 3455555 6999999999988743
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-09 Score=106.46 Aligned_cols=240 Identities=9% Similarity=0.063 Sum_probs=140.9
Q ss_pred EeEECCCCCEEEEee--CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.++++|+|+++++.. .++.++||.+.+++. ..+..... . ..++. ..+..+++.+. +.
T Consensus 21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~---------~-~~~~~-~~p~gv~~d~~---------g~ 79 (343)
T 2qe8_A 21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG---------N-AIITF-DTVLGIKSDGN---------GI 79 (343)
T ss_dssp EEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS---------S-CCCCC-SCEEEEEECSS---------SE
T ss_pred eEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc---------C-cccce-eEeeEEEEcCC---------Cc
Confidence 448999999998864 234355665545543 22321110 0 00111 23445555443 44
Q ss_pred EEEEEeC-----CCeEEEEEccCCeeeEEccC-----CCCCCEEEEEEecCCCEEE-EEe---CCCcEEEEeCCCCceeE
Q 006808 88 LLVLGTG-----GGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIY-SAG---ADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 88 ~l~~~~~-----~g~v~iwd~~~~~~~~~~~~-----~h~~~v~~~~~s~~g~~l~-s~~---~dg~v~iwd~~~~~~~~ 153 (630)
++++-+. .+.|.+||+.+++.+..+.. .+...+..+++++++..++ +-. .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 4444333 47899999999986544421 1234578999998655554 444 57899999998887766
Q ss_pred EeecCC-----------------------------CCeEEEEEccCCCEEEEeC---CeEEEEECC---CCc-----eee
Q 006808 154 KFRAST-----------------------------KGISCMAVSSDGKMLATAA---GQLKTFNCS---DHK-----KMQ 193 (630)
Q Consensus 154 ~~~~~~-----------------------------~~v~~l~~~p~~~~l~~~~---g~i~lwd~~---~~~-----~~~ 193 (630)
.+..|. ..+..++|+|+|+.|+++. +.++.++.. .+. ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 553321 2357899999999888775 456555532 111 111
Q ss_pred --EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 194 --KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 194 --~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
...++.+....++++++|..+++.. .++.|.+|+..+++.. .+.... .......+++. +++.++++.+
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~---~~~~~~-~~~~p~~va~~-----~~g~l~v~~~ 309 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYK---LLVTDE-KLSWTDSFNFG-----SDGYLYFDCN 309 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEE---EEEECG-GGSCEEEEEEC-----TTSCEEEEEC
T ss_pred ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEE---EEEECC-ceecCCeeEEC-----CCCcEEEEeC
Confidence 1223444567789999998766655 6889999998444422 122111 12334556665 7777777766
Q ss_pred cCCcEEEEE
Q 006808 272 ETGVCYIWY 280 (630)
Q Consensus 272 ~dg~i~iwd 280 (630)
..+.+.+|.
T Consensus 310 ~~~~~~~f~ 318 (343)
T 2qe8_A 310 QLHHSAPLN 318 (343)
T ss_dssp CGGGSGGGB
T ss_pred ccccccccc
Confidence 555544443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-08 Score=92.66 Aligned_cols=190 Identities=11% Similarity=0.035 Sum_probs=133.7
Q ss_pred eEECCCCCEEEEeeC--CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 11 ~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++|+|+|.++++.+. ++.|+++|+.+++.+..+.-.. +. ...-+.+. +..
T Consensus 26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---------------~~--fgeGi~~~-----------g~~ 77 (266)
T 2iwa_A 26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---------------SY--FGEGLTLL-----------NEK 77 (266)
T ss_dssp EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT---------------TC--CEEEEEEE-----------TTE
T ss_pred EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC---------------Cc--ceEEEEEe-----------CCE
Confidence 389999765555543 6799999999999988765211 00 00011111 333
Q ss_pred EEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-----Ce
Q 006808 89 LVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-----GI 162 (630)
Q Consensus 89 l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~v 162 (630)
|+.++ .++.+.++|..+.+.+.++..+ ... ...++++|+.++.+..++.|.++|..+.+.+..+..... .+
T Consensus 78 lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 78 LYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp EEEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 44444 5678999999999988777544 111 244666888888877889999999999998888764321 35
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------------CCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
..+.|. +|..++... +.|.+.|..+++.+..+.-. ......|+|+|+++.+++++.....+.+.
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 678888 675555543 89999999999988887521 02458999999998888877677888888
Q ss_pred EcCCC
Q 006808 228 RTDGV 232 (630)
Q Consensus 228 d~~~~ 232 (630)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 87654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-08 Score=103.89 Aligned_cols=241 Identities=9% Similarity=0.046 Sum_probs=153.3
Q ss_pred CCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecc-cccccccccCCcEEEEE
Q 006808 15 PALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKKKRKLGSSLLVLG 92 (630)
Q Consensus 15 ~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~l~~~ 92 (630)
+||+++..+.. +++|.+.|+.+.++...+.-..+ .....+++.. ++ +.+++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-----------------~~phg~~~~~~p~--------~~~v~~~ 153 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-----------------KGIHGLRPQKWPR--------SNYVFCN 153 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-----------------CSEEEEEECCSSB--------CSEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-----------------CCCcceeeeecCC--------CcEEEEe
Confidence 38888877665 66799999999998875431110 0111222211 11 5566666
Q ss_pred e------------------CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC---------------
Q 006808 93 T------------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--------------- 139 (630)
Q Consensus 93 ~------------------~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--------------- 139 (630)
+ .++.+.++|..+.+..+++..+ +....++++|+|+++++++.+.
T Consensus 154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD 231 (595)
T ss_dssp ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence 3 2346899999999988777643 2456788999999988887543
Q ss_pred -----------------------cEEEEeCCC--Cce-eEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCc
Q 006808 140 -----------------------MVCEIDPLT--GSL-LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK 190 (630)
Q Consensus 140 -----------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~ 190 (630)
.|.+.|..+ ++. +..+... ....++.++|||+++++++ ++|.++|+.+.+
T Consensus 232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 477888877 544 4555532 3457899999999999987 799999998653
Q ss_pred ------------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc-----cceeeeeecCCceeeeeE
Q 006808 191 ------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-----SASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 191 ------------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~ 253 (630)
.+.... -......++|+|+| +++++..-|+.|.+|++...... ....+..+.-+...-...
T Consensus 311 ~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~ 388 (595)
T 1fwx_A 311 AVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLK 388 (595)
T ss_dssp HHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEE
T ss_pred cccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccce
Confidence 223332 23457899999999 77777767999999998762100 001122222211111111
Q ss_pred EecCCccCCCCCEEEEEec-C-CcE-----------EEEEcCCcc
Q 006808 254 CIDNGGVDDAGLYVLAISE-T-GVC-----------YIWYGQNIE 285 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~-d-g~i-----------~iwd~~~~~ 285 (630)
+.....++|||++|++++. . .++ .++|+..++
T Consensus 389 ~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 389 TVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 1111234599999999866 1 233 889985443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-08 Score=108.49 Aligned_cols=199 Identities=12% Similarity=0.156 Sum_probs=126.0
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..+++++.++.|..+|..+|+.+..+.............. ....... ..+ +..|++++.+|
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~--~~~------------~g~v~v~~~dg 131 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACC----DAVNRGV--AVW------------KGKVYVGVLDG 131 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTT----CSCCCCC--EEE------------TTEEEEECTTS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccc----cCCCCcc--EEE------------CCEEEEEccCC
Confidence 45677777889999999999999988764322111000000 0000000 001 56789999999
Q ss_pred eEEEEEccCCeeeEEccCC-CCCCEEEEEEec---CCCEEEEEe------CCCcEEEEeCCCCceeEEeecCC-------
Q 006808 97 DVLALAVSAGQLKWRLSDC-HPGGVSAISFAT---HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST------- 159 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~-h~~~v~~~~~s~---~g~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~------- 159 (630)
.|..+|..+|+.++++... +......+..+| ++ .++.++ .+|.|+.||..+|+.+..+....
T Consensus 132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 210 (689)
T 1yiq_A 132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP 210 (689)
T ss_dssp EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence 9999999999998877543 211111111111 44 455443 36899999999999887765211
Q ss_pred ------------------------CCeEEEEEccCCCEEEEeC--C-------------------eEEEEECCCCceeeE
Q 006808 160 ------------------------KGISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (630)
Q Consensus 160 ------------------------~~v~~l~~~p~~~~l~~~~--g-------------------~i~lwd~~~~~~~~~ 194 (630)
.....++++|++.+++++. + .|..||..+|+.+-.
T Consensus 211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0112578889888888876 3 399999999998877
Q ss_pred eec--CC-------CCeEEEEEeeCCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 195 ~~~--h~-------~~v~~l~~sp~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+.. |. .++.......+|+ .++.++ .+|.++++|..+++..
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL 342 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence 753 21 1222223334665 566655 7999999999998754
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-08 Score=97.89 Aligned_cols=218 Identities=16% Similarity=0.112 Sum_probs=132.1
Q ss_pred EeEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
...|+|+|+ +++++..++.|..|+. ++.. ..+..+.. ....+.|.+. +.+
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~------------------~~~gl~~d~d---------G~l 99 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATA------------------FTNGNAVDAQ---------QRL 99 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCS------------------CEEEEEECTT---------SCE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCC------------------ccceeeECCC---------CCE
Confidence 348999998 5566667889999997 4543 33332221 2334444432 554
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccC---C-CCCCEEEEEEecCCCEEEE----EeC-------------CCcEEEEeCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSD---C-HPGGVSAISFATHGSCIYS----AGA-------------DGMVCEIDPL 147 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~---~-h~~~v~~~~~s~~g~~l~s----~~~-------------dg~v~iwd~~ 147 (630)
+++...++.|.+|+.. ++.. .+.. + ....+.++++.|+|++.++ |.. .+.|..||..
T Consensus 100 ~v~~~~~~~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEEETTTTEEEEECTT-SCEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEEECCCCEEEEECCC-CCEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 4444455789999986 5432 2211 1 1134678999999997776 321 2568888877
Q ss_pred CCceeEEeecCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCce--eeEe-ecCCCCeEEEEEeeCCcEEEE
Q 006808 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK--MQKF-SGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~--~~~~-~~h~~~v~~l~~sp~~~~l~~ 216 (630)
+++..... .......++|+|+++.|+++. +.|++|++..+.. ...+ ....+....+++.++|+.. +
T Consensus 178 ~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v 254 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-S 254 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-E
T ss_pred CCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-E
Confidence 77654433 334568899999999776654 3799999875531 1112 1123445678999999854 4
Q ss_pred EeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
++ .+ .|.+|+..... . ..+..+. ....++|. |+++.|..++.++.
T Consensus 255 ~~-~~-gv~~~~~~g~~-~-----~~~~~~~-~~~~~~f~-----~d~~~L~it~~~~l 299 (305)
T 3dr2_A 255 SS-GT-GVCVFDSDGQL-L-----GHIPTPG-TASNCTFD-----QAQQRLFITGGPCL 299 (305)
T ss_dssp CC-SS-EEEEECTTSCE-E-----EEEECSS-CCCEEEEC-----TTSCEEEEEETTEE
T ss_pred ec-CC-cEEEECCCCCE-E-----EEEECCC-ceeEEEEe-----CCCCEEEEEcCCeE
Confidence 43 34 49999984332 2 1222222 24456665 78888888777543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.5e-08 Score=98.31 Aligned_cols=233 Identities=9% Similarity=0.003 Sum_probs=142.2
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..+++++.++.|..||..+|+.+..+........ . ........+ .+.. .+..+++++.+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~-----~~~~~~~~~---~~~~-------~~~~v~v~~~~ 112 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----F-----SKEPALLSG---GVTV-------SGGHVYIGSEK 112 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----C-----SCCCCCEEE---EEEE-------ETTEEEEEETT
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----c-----cccCccccc---CceE-------eCCEEEEEcCC
Confidence 456777888889999999999998876653221000 0 000000000 0000 05678899999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe-----EEEEEccC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD 170 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~ 170 (630)
+.|..+|..+|+.+++..... ........ .+..++.++.++.|..+|..+|+.+..+....... ...... +
T Consensus 113 g~l~a~d~~tG~~~W~~~~~~-~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~ 188 (376)
T 3q7m_A 113 AQVYALNTSDGTVAWQTKVAG-EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F 188 (376)
T ss_dssp SEEEEEETTTCCEEEEEECSS-CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred CEEEEEECCCCCEEEEEeCCC-ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence 999999999999887664321 11111122 24578888899999999999999887766432211 122222 3
Q ss_pred CCEEEEeC--CeEEEEECCCCceeeEeecCCCC----------e-EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~----------v-~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
+ .++++. +.+..+|..+++.+..+...... + ....+ .+..+++++ .++.+..+|..+++..
T Consensus 189 ~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~~-- 262 (376)
T 3q7m_A 189 G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQIM-- 262 (376)
T ss_dssp T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCEE--
T ss_pred C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcEE--
Confidence 4 455554 79999999999887666422110 1 01111 234566665 5889999999988744
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
.... ... .. ... .++..|+.++.+|.|..||..+++.+-.
T Consensus 263 -w~~~--~~~-~~-~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~~w~ 302 (376)
T 3q7m_A 263 -WKRE--LGS-VN-DFI-------VDGNRIYLVDQNDRVMALTIDGGVTLWT 302 (376)
T ss_dssp -EEEC--CCC-EE-EEE-------EETTEEEEEETTCCEEEEETTTCCEEEE
T ss_pred -eecc--CCC-CC-Cce-------EECCEEEEEcCCCeEEEEECCCCcEEEe
Confidence 2221 111 11 122 2357788888999999999999986543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-07 Score=95.71 Aligned_cols=226 Identities=15% Similarity=0.114 Sum_probs=142.8
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
++..++.++.++.|..+|..+|+.+..+........ .| .+ .+..+++++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----~p------------~~-------------~~~~v~v~~~~ 152 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS----RP------------VV-------------SDGLVLIHTSN 152 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS----CC------------EE-------------ETTEEEEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc----CC------------EE-------------ECCEEEEEcCC
Confidence 456777888899999999999998876653211000 00 00 05568889999
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCE------EEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCC----eE--
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGV------SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG----IS-- 163 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v------~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----v~-- 163 (630)
|.|..+|..+|+.++..... .++ ...... +..++.++.++.+..+|..+|+.+..+...... +.
T Consensus 153 g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp SEEEEEETTTCCEEEEEECC--C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 99999999999988776432 111 112222 457888888999999999999987776532110 00
Q ss_pred -EEEEcc--CCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 164 -CMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 164 -~l~~~p--~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
.+...| .+..+++++ +.+..+|..+++.+..... .....+.. ++..+++++ .++.|..+|..+++..
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~-~~g~l~~~d~~tG~~~--- 300 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVD-QNDRVMALTIDGGVTL--- 300 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEE-TTCCEEEEETTTCCEE---
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEc-CCCeEEEEECCCCcEE---
Confidence 011111 133444444 8999999999987766542 23344443 355666666 5889999999988743
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..... ........... .+..|++++.+|.|++||..+++.+...
T Consensus 301 w~~~~-~~~~~~~~~~~-------~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 301 WTQSD-LLHRLLTSPVL-------YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EEECT-TTTSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred Eeecc-cCCCcccCCEE-------ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 21110 11111111111 2467888999999999999999876543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-10 Score=116.64 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=102.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-CeE-
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GIS- 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~- 163 (630)
+..+++++.+|.|..||..+|+.++++.. +.+.+..+.+++..+++++.||.|+.||..+|+.+..+..+.. .+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 67899999999999999999999887753 4555555566777788888999999999999988766653321 110
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
+..+. .+..+++++ +.++.||..+|+.+..+..+. ...++|++..+++++ .++.|+.||..+++.. ..+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~---W~~ 156 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKTRELR---WNA 156 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSSSSCC---CEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCCCCEE---EeE
Confidence 11111 233455554 899999999999887776543 234567788888877 5899999999988754 222
Q ss_pred eecCCceeeeeEEecCCccCCCC---CEEEEEecCCcEEEEEcCCccccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAG---LYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.... .....+. ++. ..+++++.+|.|+.||..+|+.+-..
T Consensus 157 ~~~~----~~~~~~~-----~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 157 TYFD----YAASLPE-----DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEEE----ECCBCCC-----CCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred eccc----ccCcccc-----CCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 2111 0111111 221 56777889999999999999876543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-08 Score=102.48 Aligned_cols=231 Identities=11% Similarity=0.007 Sum_probs=142.3
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccc-------cccccccccccccccccccceeeEEe
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW 73 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~~~~~~w 73 (630)
++|+|||++++++. .++.|.+||+.+++.+.++..+. ..+..+.++|+
T Consensus 70 i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD--------------- 134 (368)
T 1mda_H 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS--------------- 134 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT---------------
T ss_pred eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence 49999999888876 36889999999999999886431 12334444444
Q ss_pred cccccccccccCCcEEEEEeC--CCeEEE--EEccCCeeeEEccCCCCCCEEEEEEecCCC-EEEEEeCCCcEEEEeCCC
Q 006808 74 LSVDRKKKRKLGSSLLVLGTG--GGDVLA--LAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT 148 (630)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~~~--~g~v~i--wd~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~v~iwd~~~ 148 (630)
+++++++.. +..|.+ +|+.+ +..+..+. . +.+.|+|+ .+++.+.|+.+...|+.+
T Consensus 135 ------------Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 135 ------------SACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp ------------SSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred ------------CCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 677888775 356888 99887 22332221 1 12334443 455667788888889876
Q ss_pred -----CceeE----EeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCc--eeeEeec-------C---CCCeEEEE
Q 006808 149 -----GSLLG----KFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK--KMQKFSG-------H---PGAVRFMT 206 (630)
Q Consensus 149 -----~~~~~----~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~--~~~~~~~-------h---~~~v~~l~ 206 (630)
++... .+.....+. . .+++..++..+ +.+.+.|..+.. .+..+.- + ......+.
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~ 270 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred ccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence 43321 122223343 3 55555444444 889999986542 2222211 0 11122268
Q ss_pred EeeCCcEEEEEee---C-----CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCE-EEEEe-cCCcE
Q 006808 207 FSDNGKYVLSSAV---G-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAIS-ETGVC 276 (630)
Q Consensus 207 ~sp~~~~l~~~~~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s-~dg~i 276 (630)
|+|++++++++.. . +..+.++|+.+.+.. .....+. ....+.++ |||++ +++.. .++.|
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv---~~i~vg~---~p~gi~~s-----~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS---GPISNGH---DSDAIIAA-----QDGASDNYANSAGTEVL 339 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE---ECCEEEE---EECEEEEC-----CSSSCEEEEEETTTTEE
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE---EEEECCC---CcceEEEC-----CCCCEEEEEccCCCCeE
Confidence 9999998887643 1 235669999998744 1222222 23445555 89874 55556 58999
Q ss_pred EEEEcCCcccccccC
Q 006808 277 YIWYGQNIEELRNTK 291 (630)
Q Consensus 277 ~iwd~~~~~~~~~~~ 291 (630)
.++|+.+++.+...+
T Consensus 340 sVID~~t~kvv~~I~ 354 (368)
T 1mda_H 340 DIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEESSSCEEEEECC
T ss_pred EEEECCCCcEEEEEE
Confidence 999999998877654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-07 Score=94.04 Aligned_cols=190 Identities=11% Similarity=0.056 Sum_probs=128.3
Q ss_pred CcEEEEEeCCCeEEEEEccCC----eeeEEcc------CCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAG----QLKWRLS------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG 149 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~----~~~~~~~------~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~ 149 (630)
..+++.+..++.|.++|+.+. +....+. +.-......+...|+| .++++..+ |.|.++|..++
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 345555667788999999765 4444331 0011245667888999 77766555 78999999999
Q ss_pred ceeEEeecCCC---CeEEEEEccCCCEEEEe---------------------CCeEEEEECCCCceeeEeecC-C-CCeE
Q 006808 150 SLLGKFRASTK---GISCMAVSSDGKMLATA---------------------AGQLKTFNCSDHKKMQKFSGH-P-GAVR 203 (630)
Q Consensus 150 ~~~~~~~~~~~---~v~~l~~~p~~~~l~~~---------------------~g~i~lwd~~~~~~~~~~~~h-~-~~v~ 203 (630)
+.+.++..... .-+.+.|+|+++.+++. +++|.+||+.+++.+.++.-. . ....
T Consensus 175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~ 254 (462)
T 2ece_A 175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL 254 (462)
T ss_dssp CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence 99999874322 23458889999999888 379999999998888877642 1 2345
Q ss_pred EEEE--eeCCcEEEEEee-----CCCeEEEEEcCCCccccceeeeeecCC----------------ceeeeeEEecCCcc
Q 006808 204 FMTF--SDNGKYVLSSAV-----GERYIALWRTDGVKKQSASCVLAMEHP----------------AVFMDCRCIDNGGV 260 (630)
Q Consensus 204 ~l~~--sp~~~~l~~~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 260 (630)
.+.| +|+++++++++. .+++|.+|....+... ......+... .....-+.++
T Consensus 255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS---- 329 (462)
T 2ece_A 255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS---- 329 (462)
T ss_dssp EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----
T ss_pred eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEeCCCccccccccccccccccCCCceeEEEEC----
Confidence 6666 999999998886 6778888776543211 0011000100 1123334454
Q ss_pred CCCCCEEEEEec-CCcEEEEEcC
Q 006808 261 DDAGLYVLAISE-TGVCYIWYGQ 282 (630)
Q Consensus 261 ~~~~~~l~s~s~-dg~i~iwd~~ 282 (630)
+||++|.+++. .+.|.+||+.
T Consensus 330 -~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 330 -LDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp -TTSCEEEEEETTTTEEEEEECS
T ss_pred -CCCCEEEEEeCCCCEEEEEEec
Confidence 99999988876 7799999985
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-07 Score=95.91 Aligned_cols=190 Identities=9% Similarity=0.044 Sum_probs=130.5
Q ss_pred CcEEEEEeCC-CeEEEEEccCCeeeEEccCCCCCCEEEEEE-e-cCCCEEEEEe------------------CCCcEEEE
Q 006808 86 SSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISF-A-THGSCIYSAG------------------ADGMVCEI 144 (630)
Q Consensus 86 ~~~l~~~~~~-g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~-s-~~g~~l~s~~------------------~dg~v~iw 144 (630)
+++++++..+ +.|.+.|+.+.++...+.......+..+++ + |+++++++++ .++.+.++
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 5667776654 559999999999776332233456889998 5 8999998884 34589999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C---------------------------------------eEEEE
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G---------------------------------------QLKTF 184 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g---------------------------------------~i~lw 184 (630)
|..+.+...++.... ....++++|+|+++++++ + .|.+.
T Consensus 181 D~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 181 DADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp ETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred ECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 999998888877544 446788999999988876 2 25666
Q ss_pred ECCC--Cce-eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc------ccce-eeeeecCCceeeeeEE
Q 006808 185 NCSD--HKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSAS-CVLAMEHPAVFMDCRC 254 (630)
Q Consensus 185 d~~~--~~~-~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~------~~~~-~~~~~~~~~~~~~~~~ 254 (630)
|..+ ++. +..++.. ....++.++|||+++++++..+.+|.++|+.+.+. .... ...... .+.-.....
T Consensus 260 D~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a 337 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA 337 (595)
T ss_dssp ECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred eCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence 6666 444 3444322 24567899999999999987888999999986531 0000 111111 122234455
Q ss_pred ecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 255 IDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 255 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
|+ |+|...++.-.|+.|.+||+..
T Consensus 338 F~-----~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 338 FD-----GRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EC-----TTSEEEEEETTTTEEEEEEHHH
T ss_pred EC-----CCCeEEEEEecCCcEEEEEhhH
Confidence 65 8994334455699999999876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.3e-07 Score=100.30 Aligned_cols=199 Identities=11% Similarity=0.100 Sum_probs=127.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..+++++.++.|..+|..+|+.+..+.............. ..... .+.. .+..|++++.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~---~~a~-----------~~~~v~v~~~dg 138 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC----DVVNR---GVAL-----------WKGKVYVGAWDG 138 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS----CSCCC---CCEE-----------ETTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccc----cCCCC---CceE-----------ECCEEEEEcCCC
Confidence 44666777789999999999999988764322111000000 00000 0000 056789999999
Q ss_pred eEEEEEccCCeeeEEccCC-CC---CCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCCCC-----
Q 006808 97 DVLALAVSAGQLKWRLSDC-HP---GGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG----- 161 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~-h~---~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~----- 161 (630)
.|..+|..+|+.++++..+ .. ..+.+--.- .+..++.++. ++.|+.||..+|+.+..+......
T Consensus 139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 9999999999998877543 10 112111111 2345555543 689999999999998777642211
Q ss_pred ---------------------------eEEEEEccCCCEEEEeC--C-------------------eEEEEECCCCceee
Q 006808 162 ---------------------------ISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQ 193 (630)
Q Consensus 162 ---------------------------v~~l~~~p~~~~l~~~~--g-------------------~i~lwd~~~~~~~~ 193 (630)
...++++|++..++++. + .|..+|..+|+.+.
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 13578889888888765 2 49999999999887
Q ss_pred Eeec--CC-------CCeEEEEEeeCC---cEEEEEeeCCCeEEEEEcCCCccc
Q 006808 194 KFSG--HP-------GAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 194 ~~~~--h~-------~~v~~l~~sp~~---~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.+.. |. ....-+....+| ..+++++ .+|.++++|..+++..
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFI 350 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEe
Confidence 7653 21 122233444577 5666665 7999999999998754
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-07 Score=102.03 Aligned_cols=240 Identities=18% Similarity=0.223 Sum_probs=152.9
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEeccccccccc-ccccccccccccccceeeEEecccccccccccCCcEEEEEeC-
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT-SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (630)
+..++.++.|+.|..+|..+|+.+..+......... ...+|. +. +..+++++.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~------------v~-------------~~~v~vg~~~ 171 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR------------VV-------------KGKVIIGNGG 171 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE------------EE-------------TTEEEECCBC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE------------EE-------------CCEEEEeCCC
Confidence 557788888999999999999998877642111000 000000 00 344566554
Q ss_pred -----CCeEEEEEccCCeeeEEccCC--CC----------------------------CCEEEEEEecCCCEEEEEeCCC
Q 006808 95 -----GGDVLALAVSAGQLKWRLSDC--HP----------------------------GGVSAISFATHGSCIYSAGADG 139 (630)
Q Consensus 95 -----~g~v~iwd~~~~~~~~~~~~~--h~----------------------------~~v~~~~~s~~g~~l~s~~~dg 139 (630)
+|.|..||..+|+.++++... .. .....+++.|++..++.++.++
T Consensus 172 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g 251 (668)
T 1kv9_A 172 AEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNG 251 (668)
T ss_dssp TTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred CCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCC
Confidence 488999999999998876421 10 0112468888888888887776
Q ss_pred -------------------cEEEEeCCCCceeEEeecC--C-------CCeEEEEEccCCC---EEEEeC--CeEEEEEC
Q 006808 140 -------------------MVCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTFNC 186 (630)
Q Consensus 140 -------------------~v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~~~---~l~~~~--g~i~lwd~ 186 (630)
.|..+|..+|+.+..++.. . .+.....+..+|+ .++.++ |.++++|.
T Consensus 252 ~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~ 331 (668)
T 1kv9_A 252 SPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDR 331 (668)
T ss_dssp ESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred CccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEEC
Confidence 3999999999998887642 1 2233333334665 566666 89999999
Q ss_pred CCCceeeEeecCCC------------C------------------------eEEEEEeeCCcEEEEEe------------
Q 006808 187 SDHKKMQKFSGHPG------------A------------------------VRFMTFSDNGKYVLSSA------------ 218 (630)
Q Consensus 187 ~~~~~~~~~~~h~~------------~------------------------v~~l~~sp~~~~l~~~~------------ 218 (630)
.+|+.+...+.... + -..++++|+...+++..
T Consensus 332 ~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~ 411 (668)
T 1kv9_A 332 TNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGK 411 (668)
T ss_dssp TTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGG
T ss_pred CCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecc
Confidence 99998744321110 0 01267788766655421
Q ss_pred -----------------------eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCc
Q 006808 219 -----------------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV 275 (630)
Q Consensus 219 -----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 275 (630)
..++.|..||+.+++.. ........ ....... ..+.++++++.||.
T Consensus 412 ~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~---W~~~~~~~--~~~~~~~------t~gg~vf~g~~dg~ 480 (668)
T 1kv9_A 412 DFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA---WKVPYPTH--WNGGTLS------TAGNLVFQGTAAGQ 480 (668)
T ss_dssp GCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE---EEEEESSS--CCCCEEE------ETTTEEEEECTTSE
T ss_pred ccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE---EEccCCCC--CcCceeE------eCCCEEEEECCccc
Confidence 12378999999998754 22222221 1111111 35678888999999
Q ss_pred EEEEEcCCcccccccCc
Q 006808 276 CYIWYGQNIEELRNTKA 292 (630)
Q Consensus 276 i~iwd~~~~~~~~~~~~ 292 (630)
++.||..+++.+...+.
T Consensus 481 l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 481 MHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEEETTTCCEEEEEEC
T ss_pred chhhhhhcChhheEecC
Confidence 99999999988766543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.2e-08 Score=95.30 Aligned_cols=195 Identities=13% Similarity=0.064 Sum_probs=122.1
Q ss_pred eEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 006808 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG 149 (630)
Q Consensus 70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~ 149 (630)
...|.+.. ..++++...++.|..|+.. +... .+ ..+...+.+++++++|+++++...++.|..|+.. +
T Consensus 49 gp~~~~~g--------~~l~~~d~~~~~i~~~~~~-g~~~-~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 49 GPAWWEAQ--------RTLVWSDLVGRRVLGWRED-GTVD-VL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp EEEEEGGG--------TEEEEEETTTTEEEEEETT-SCEE-EE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCeEeCCC--------CEEEEEECCCCEEEEEeCC-CCEE-EE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 45666542 3367777788999999984 4432 22 2355678999999999866665566789999975 5
Q ss_pred ceeEEeecC----CCCeEEEEEccCCCEEEE----eC---------------CeEEEEECCCCceeeEeecCCCCeEEEE
Q 006808 150 SLLGKFRAS----TKGISCMAVSSDGKMLAT----AA---------------GQLKTFNCSDHKKMQKFSGHPGAVRFMT 206 (630)
Q Consensus 150 ~~~~~~~~~----~~~v~~l~~~p~~~~l~~----~~---------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~ 206 (630)
+........ ...+..++++|+|+++++ |. +.|+.||..+++..... .......++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~ 194 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA 194 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence 532221111 124678999999998886 21 46788887667644332 344568899
Q ss_pred EeeCCcEEEEEeeC-----CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 207 FSDNGKYVLSSAVG-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 207 ~sp~~~~l~~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
|+|+++.|+++... .+.|++|++...... ....+. .........+.+. ++|++.+ ++.+ .|.+|+.
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~-~~~~~~pdgi~~d-----~~G~lwv-~~~~-gv~~~~~ 265 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH-DRRHFA-SVPDGLPDGFCVD-----RGGWLWS-SSGT-GVCVFDS 265 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTEEE-EEEEEE-CCSSSCCCSEEEC-----TTSCEEE-CCSS-EEEEECT
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc-CCeEEE-ECCCCCCCeEEEC-----CCCCEEE-ecCC-cEEEECC
Confidence 99999988877643 268999998764311 011111 1111122334454 7888444 4444 4999997
Q ss_pred CCccccc
Q 006808 282 QNIEELR 288 (630)
Q Consensus 282 ~~~~~~~ 288 (630)
.++.+.
T Consensus 266 -~g~~~~ 271 (305)
T 3dr2_A 266 -DGQLLG 271 (305)
T ss_dssp -TSCEEE
T ss_pred -CCCEEE
Confidence 454433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.6e-08 Score=96.35 Aligned_cols=125 Identities=10% Similarity=-0.037 Sum_probs=91.8
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCceeEEeecCC-------
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAST------- 159 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~------- 159 (630)
.|.++|..+++.+.++..+.. + .+.|+|+|++++++. .++.|.+||+.+++.+.++....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 788999999999988876654 4 799999999988886 36889999999999999987541
Q ss_pred CCeEEEEEccCCCEEEEeC----CeEEE--EECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA----GQLKT--FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~----g~i~l--wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.....++++|||++++++. +.+.+ +|+.+ +.++.... . ..+.|+++..+.+.+.|+.+.+.++.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 2356899999999998874 47888 88876 44443211 1 123455543333333677777788776
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-07 Score=85.33 Aligned_cols=173 Identities=7% Similarity=0.034 Sum_probs=120.0
Q ss_pred EECCCCCEEEEeeCCC--cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.|+ ++.++.+.+.+| .|+++|+.+|+.+..+.-... . | ...+ .. . +..|
T Consensus 49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~----F---------geGi---t~--~---------g~~l 99 (262)
T 3nol_A 49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-Y----F---------GEGI---SD--W---------KDKI 99 (262)
T ss_dssp EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-C----C---------EEEE---EE--E---------TTEE
T ss_pred EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-c----c---------eeEE---EE--e---------CCEE
Confidence 677 676667777665 899999999999887752110 0 0 0001 10 0 3345
Q ss_pred EEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-----CCeE
Q 006808 90 VLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS 163 (630)
Q Consensus 90 ~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~ 163 (630)
+..+ .++.+.+||..+.+.+.++..+- ....++++++.|+.+..++.|.++|..+.+.+.++.... ..+.
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 5555 46789999999999987775432 223444678888877778889999999999888876532 2344
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC------------CCCeEEEEEeeCCcEEEEEe
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~l~~~~ 218 (630)
.+.|. +|..++..- +.|.+.|..+++.+..+... ..-.+.|+|+|+++.|+++|
T Consensus 176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 57776 676555543 79999999999988877532 12458899999988888877
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-07 Score=105.13 Aligned_cols=195 Identities=12% Similarity=0.043 Sum_probs=125.1
Q ss_pred ceeeEEecccccccccccCCcEEEEEe-CCC----eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC--
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGT-GGG----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-- 139 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~-~~g----~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-- 139 (630)
.+..+.|.|. +++|+.+. ..| .|++||+.+++.+.....+ ....+++|+ ||+.|+.++.+.
T Consensus 130 ~l~~~~~SpD---------g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 130 ALDQLSFSRD---------GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp EEEEEEECTT---------SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC
T ss_pred EEEEEEECCC---------CCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcc
Confidence 4555667664 55555433 333 4999999999865432211 113567899 999988887774
Q ss_pred -----------cEEEEeCCCCce--eEEeec---CCCCeEEEEEccCCCEEEEeC------CeEEEEECCCCc-eeeEee
Q 006808 140 -----------MVCEIDPLTGSL--LGKFRA---STKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFS 196 (630)
Q Consensus 140 -----------~v~iwd~~~~~~--~~~~~~---~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~-~~~~~~ 196 (630)
.|++|++.+++. ...+.. +...+..+.|+|||++|+... +.|+++|+.++. ....+.
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 399999987653 222332 334578899999999886543 389999998764 455666
Q ss_pred cCCCCeEEEEEeeCCcEEEEEeeCC---CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-
Q 006808 197 GHPGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE- 272 (630)
Q Consensus 197 ~h~~~v~~l~~sp~~~~l~~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~- 272 (630)
.+....... |+++|..|+..+..+ +.|..|++.++...... ....+....+ .++ +++.+|+....
T Consensus 278 ~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~--~l~~~~~~~~---~~s-----~~g~~lv~~~~~ 346 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR--DLIPERQQVL---TVH-----SGSGYLFAEYMV 346 (693)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE--EEECCCSSCE---EEE-----EETTEEEEEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE--EEecCCCCEE---EEE-----EECCEEEEEEEE
Confidence 666665555 667777666655333 57999999876532111 1223333333 444 77888777665
Q ss_pred CC--cEEEEEcCCc
Q 006808 273 TG--VCYIWYGQNI 284 (630)
Q Consensus 273 dg--~i~iwd~~~~ 284 (630)
+| .|++|++..+
T Consensus 347 ~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 347 DATARVEQFDYEGK 360 (693)
T ss_dssp TTEEEEEEECTTSC
T ss_pred CCeeEEEEEECCCC
Confidence 44 6889988744
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-06 Score=94.10 Aligned_cols=238 Identities=15% Similarity=0.122 Sum_probs=148.9
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccc-cccccccccccccccceeeEEecccccccccccCCcEEEEEeC-
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG- 94 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~- 94 (630)
+..++.++.|+.|..+|..+|+.+..+........ ....+|. + . +..+++++.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~------------v-~------------~g~v~vg~~~ 169 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPF------------V-A------------KDTVLMGCSG 169 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE------------E-E------------TTEEEEECBC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCE------------E-E------------CCEEEEEecC
Confidence 55777888899999999999999877653211000 0000000 0 0 345666665
Q ss_pred -----CCeEEEEEccCCeeeEEccCCCCC-------------------------------------CEEEEEEecCCCEE
Q 006808 95 -----GGDVLALAVSAGQLKWRLSDCHPG-------------------------------------GVSAISFATHGSCI 132 (630)
Q Consensus 95 -----~g~v~iwd~~~~~~~~~~~~~h~~-------------------------------------~v~~~~~s~~g~~l 132 (630)
+|.|..+|..+|+.++++...... ....+++.+....+
T Consensus 170 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~v 249 (571)
T 2ad6_A 170 AELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLF 249 (571)
T ss_dssp GGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE
T ss_pred CccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeE
Confidence 789999999999998776432110 00235677766777
Q ss_pred EEEeCC----------------CcEEEEeCCCCceeEEeecCC----------CCeEEEEEccCCC---EEEEeC--CeE
Q 006808 133 YSAGAD----------------GMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSDGK---MLATAA--GQL 181 (630)
Q Consensus 133 ~s~~~d----------------g~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~~~---~l~~~~--g~i 181 (630)
+.++.+ +.|..+|..+|+.+..++... .++ -+...++|+ .++.++ |.+
T Consensus 250 y~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l 328 (571)
T 2ad6_A 250 YYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGIL 328 (571)
T ss_dssp EEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEE
T ss_pred EEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEE
Confidence 766532 359999999999988776421 122 122334674 455565 899
Q ss_pred EEEECCCCceeeEeecCC-------------CCe--------------------------EEEEEeeCCcEEEEEee---
Q 006808 182 KTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAV--- 219 (630)
Q Consensus 182 ~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~l~~~~~--- 219 (630)
+++|..+|+.+..+.... .++ ..++|+|+...+++.+.
T Consensus 329 ~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 408 (571)
T 2ad6_A 329 YTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHIC 408 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEE
T ss_pred EEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcc
Confidence 999999998876654211 111 24578888777766542
Q ss_pred ---------------------------------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCE
Q 006808 220 ---------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY 266 (630)
Q Consensus 220 ---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
.++.|..||+.+++.. ........ ....... ..+..
T Consensus 409 ~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~---W~~~~~~~--~~~~~~~------t~gg~ 477 (571)
T 2ad6_A 409 MDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK---WTKWEKFA--AWGGTLY------TKGGL 477 (571)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE---EEEEESSC--CCSBCEE------ETTTE
T ss_pred ccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE---EEecCCCC--ccceeEE------ECCCE
Confidence 2478899999888744 22222211 1111111 24567
Q ss_pred EEEEecCCcEEEEEcCCcccccccC
Q 006808 267 VLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 267 l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
++.++.||.|+.||..+|+.+...+
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEEEEe
Confidence 7789999999999999998876554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-06 Score=93.83 Aligned_cols=244 Identities=14% Similarity=0.109 Sum_probs=149.5
Q ss_pred EECCCCCE----EEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 12 SFSPALDY----FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 12 ~fs~dg~~----las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+++|.+.. ++.++.|+.|..+|..+|+.+...............+.+ .+ . +.
T Consensus 112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP-----------~v-~------------~g 167 (599)
T 1w6s_A 112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP-----------YV-V------------KD 167 (599)
T ss_dssp EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC-----------EE-E------------TT
T ss_pred EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCC-----------EE-E------------CC
Confidence 45444444 788888999999999999998776532210000000000 00 0 34
Q ss_pred EEEEEeC------CCeEEEEEccCCeeeEEccCCCCC------------------------------------CE-EEEE
Q 006808 88 LLVLGTG------GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAIS 124 (630)
Q Consensus 88 ~l~~~~~------~g~v~iwd~~~~~~~~~~~~~h~~------------------------------------~v-~~~~ 124 (630)
.+++++. +|.|+.+|..+|+.++++...... .+ ..++
T Consensus 168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a 247 (599)
T 1w6s_A 168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA 247 (599)
T ss_dssp EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence 4566553 789999999999998776432110 01 1356
Q ss_pred EecCCCEEEEEeCC----------------CcEEEEeCCCCceeEEeecCCC----------CeEEEEEc-cCC---CEE
Q 006808 125 FATHGSCIYSAGAD----------------GMVCEIDPLTGSLLGKFRASTK----------GISCMAVS-SDG---KML 174 (630)
Q Consensus 125 ~s~~g~~l~s~~~d----------------g~v~iwd~~~~~~~~~~~~~~~----------~v~~l~~~-p~~---~~l 174 (630)
+.+....++.+..+ +.|..+|..+|+.+..++.... ++ -+... .+| ..+
T Consensus 248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v 326 (599)
T 1w6s_A 248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLL 326 (599)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEE
T ss_pred EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEE
Confidence 66777788877655 3799999999999887765322 12 12222 467 456
Q ss_pred EEeC--CeEEEEECCCCceeeEeecCC-------------CCe--------------------------EEEEEeeCCcE
Q 006808 175 ATAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKY 213 (630)
Q Consensus 175 ~~~~--g~i~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~sp~~~~ 213 (630)
+.++ |.++++|..+|+.+....-.. .++ ..++|+|+...
T Consensus 327 ~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~ 406 (599)
T 1w6s_A 327 THPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKREL 406 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred EEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCE
Confidence 6565 899999999998876553111 111 24567776665
Q ss_pred EEEEee--------------------------------------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEe
Q 006808 214 VLSSAV--------------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 214 l~~~~~--------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (630)
+++... ..+.|..||+.+++.. .......+ .......
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~---W~~~~~~~--~~~g~~~ 481 (599)
T 1w6s_A 407 FFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK---WEKMERFA--VWGGTMA 481 (599)
T ss_dssp EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE---EEEEESSC--CCSBCEE
T ss_pred EEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEE---eEecCCCC--ccCcceE
Confidence 554321 2367888888887643 22222211 1111111
Q ss_pred cCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..+..++.++.||.++.||.++|+.+-..+
T Consensus 482 ------tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 482 ------TAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp ------ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ------ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 246778889999999999999999876654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.5e-07 Score=90.74 Aligned_cols=189 Identities=10% Similarity=0.096 Sum_probs=116.0
Q ss_pred eEeEECCCCCEEEEeeC-----CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 9 ILTSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..++|+++|+++++-.. ++.|.+||+.+++.+..+....... ........+++.+..
T Consensus 70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~------------~~~~~~~~v~vd~~~------ 131 (343)
T 2qe8_A 70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT------------LSNSFVNDLAVDLIH------ 131 (343)
T ss_dssp EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS------------CTTCCCCEEEEETTT------
T ss_pred eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc------------ccccccceEEEecCC------
Confidence 45699999987665443 5789999999998777664221100 000112234443321
Q ss_pred cCCcEEEEEe---CCCeEEEEEccCCeeeEEccCCCC-----------------------------CCEEEEEEecCCCE
Q 006808 84 LGSSLLVLGT---GGGDVLALAVSAGQLKWRLSDCHP-----------------------------GGVSAISFATHGSC 131 (630)
Q Consensus 84 ~~~~~l~~~~---~~g~v~iwd~~~~~~~~~~~~~h~-----------------------------~~v~~~~~s~~g~~ 131 (630)
+..+++.. .++.|.+||+.+++....+ .+|. ..+..++|+|+|+.
T Consensus 132 --g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ 208 (343)
T 2qe8_A 132 --NFVYISDPAPDDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW 208 (343)
T ss_dssp --TEEEEEECCSGGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCE
T ss_pred --CEEEEEcCccCCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCE
Confidence 33334443 5678999999887754332 2221 23688999999998
Q ss_pred EEEEeCCC-cEEEEeCC---CCc-----eeE--EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeec-
Q 006808 132 IYSAGADG-MVCEIDPL---TGS-----LLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG- 197 (630)
Q Consensus 132 l~s~~~dg-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~- 197 (630)
|+.+...+ .+..++.. .+. ... ...++......++++++|.++++.. +.|.+||..+++.......
T Consensus 209 ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 209 LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG
T ss_pred EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC
Confidence 88887665 45444421 111 000 1112233456799999998887776 7999999856654332322
Q ss_pred CCCCeEEEEEeeCCcEEEEEe
Q 006808 198 HPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 198 h~~~v~~l~~sp~~~~l~~~~ 218 (630)
+...+.+++|.+++..+++++
T Consensus 289 ~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp GGSCEEEEEECTTSCEEEEEC
T ss_pred ceecCCeeEECCCCcEEEEeC
Confidence 245688999999988766655
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=93.32 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=163.7
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.+..+| .+..++.++.|..|| .+++....+......+ ..+.... ...+++
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~------------------~~~~~~~----------~g~l~v 75 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIE------------------CRPSIGK----------DGTIYF 75 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEE------------------ECCEETT----------TTEECC
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcc------------------cceEEec----------CCcEEE
Confidence 444555 455666788899999 8888765443211111 1111111 334556
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
++.+ |..||. +++....+.. .........+. +..++.++.++.+..+|.. ++....+......+.++...+++
T Consensus 76 ~t~~--l~~~d~-~g~~~~~~~~-~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g 148 (330)
T 3hxj_A 76 GSDK--VYAINP-DGTEKWRFDT-KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG 148 (330)
T ss_dssp SSCE--EEEECC-CGGGGGGSCC------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS
T ss_pred ecCc--EEEECC-CCcEEEEEEC-CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC
Confidence 6555 888886 5555433321 22222233333 5578888889999999988 87776666555566777888888
Q ss_pred CEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceee
Q 006808 172 KMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM 250 (630)
Q Consensus 172 ~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 250 (630)
.+++... +.|..||.. ++.+..+......+.++.+.+++..++.+ +.|..|| .+++.. .........+
T Consensus 149 ~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t----~~l~~~d-~~g~~~-----~~~~~~~~~~ 217 (330)
T 3hxj_A 149 TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS----DKVYAIN-PDGTEK-----WNFYAGYWTV 217 (330)
T ss_dssp CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES----SSEEEEC-TTSCEE-----EEECCSSCCC
T ss_pred EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe----CEEEEEC-CCCcEE-----EEEccCCcce
Confidence 8666655 899999998 87776776555667777777777755432 6789999 554422 2222222334
Q ss_pred eeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeE
Q 006808 251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT 330 (630)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 330 (630)
...... ++| .|..++.++.|..++. +++.+............ ....++ ..|.+++.++.+
T Consensus 218 ~~~~~~-----~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~-----g~l~v~t~~ggl------- 277 (330)
T 3hxj_A 218 TRPAIS-----EDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESS-PVIGNT-----DTIYFGSYDGHL------- 277 (330)
T ss_dssp SCCEEC-----TTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSC-CEECTT-----SCEEEECTTCEE-------
T ss_pred eceEEC-----CCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCcccc-ceEcCC-----CeEEEecCCCCE-------
Confidence 444443 555 4666777788888874 45444322211100000 001111 145555554321
Q ss_pred EEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.. +.. ....+.........+.++...++|.+. + ++.++.+++.+
T Consensus 278 ~~-~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~-gt~~G~~~~~~ 321 (330)
T 3hxj_A 278 YA-INP-DGTEKWNFETGSWIIATPVIDENGTIY-F-GTRNGKFYALF 321 (330)
T ss_dssp EE-ECT-TSCEEEEEECSSCCCSCCEECTTCCEE-E-ECTTSCEEEEE
T ss_pred EE-ECC-CCcEEEEEEcCCccccceEEcCCCEEE-E-EcCCCeEEEEe
Confidence 11 111 122233333444556677777888765 3 45567666544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.6e-06 Score=78.48 Aligned_cols=200 Identities=10% Similarity=-0.005 Sum_probs=122.4
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~ 146 (630)
...++|.+.+ +.++++-...+.|..+++..+... .+.........++++++++..++.+ ...+.|.++++
T Consensus 38 ~~gi~~d~~~--------~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 38 IIGLAFDCVD--------KVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEEEEecCC--------CEEEEEECCCCEEEEEecCCCCcE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 3456666542 344455556788999999876543 2222223568999999976665555 45678999998
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
..................++++|++..|..+. +.|..+++.. .....+. ........++++|++.+|+.+...
T Consensus 109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence 64432222222224678999999655544443 4788888753 3333332 233457899999998888777766
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCccccccc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~ 290 (630)
.+.|.++++...... .... ...... .++. ++..|..+. ..+.|.++|..+++.+...
T Consensus 188 ~~~I~~~~~~g~~~~---~~~~--~~~~P~-gi~~-------d~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 188 THRAECLNPAQPGRR---KVLE--GLQYPF-AVTS-------YGKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp TTEEEEEETTEEEEE---EEEE--CCCSEE-EEEE-------ETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCCceE---EEec--CCCCce-EEEE-------eCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 789999998764322 1111 111111 2222 344555544 5689999999888765544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.2e-07 Score=83.17 Aligned_cols=173 Identities=9% Similarity=0.045 Sum_probs=118.4
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
.|+ ++.++.+.+.+|.|+++|+.+|+.+..+ - ...... .. +.. . ++.+.++
T Consensus 61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~Fg-------------eG---it~--~--------g~~Ly~l 111 (268)
T 3nok_A 61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFA-------------EG---LAS--D--------GERLYQL 111 (268)
T ss_dssp EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCE-------------EE---EEE--C--------SSCEEEE
T ss_pred EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcce-------------eE---EEE--e--------CCEEEEE
Confidence 565 3556667777889999999999988766 1 111110 00 110 0 0333444
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC--C---CeEEEE
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST--K---GISCMA 166 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~---~v~~l~ 166 (630)
.-.++.+.+||..+.+.+.++..+ ..-.+++ ++++.|+.+..++.|.++|..+.+.+.++.... . .+..+.
T Consensus 112 tw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 112 TWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp ESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EccCCEEEEEECCcCcEEEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 445678999999999998777543 2223343 578888888888999999999999888876422 1 345677
Q ss_pred EccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------------CCCeEEEEEeeCCcEEEEEe
Q 006808 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 167 ~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~~~~ 218 (630)
|. +|..++... +.|.+.|..+++.+..+.-. ..-.+.|+|+|+++.|+++|
T Consensus 188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 77 776555543 79999999999988776421 12468999999887777776
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.1e-06 Score=77.44 Aligned_cols=175 Identities=10% Similarity=0.119 Sum_probs=118.4
Q ss_pred EECCCCCEEEEeeCC--CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.|++ +.++.+.+.+ ..|+++|+.+|+.+..+.-... .....+ ... ++.+.
T Consensus 27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------------~fgeGi---~~~----------~~~ly 78 (243)
T 3mbr_X 27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------------YFGAGI---VAW----------RDRLI 78 (243)
T ss_dssp EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------------CCEEEE---EEE----------TTEEE
T ss_pred EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------------cceeEE---EEe----------CCEEE
Confidence 6765 5555666654 4899999999999887752211 000001 100 03334
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-----CCeEE
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC 164 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~ 164 (630)
.+.-.++.+.+||..+.+.+.++..+.. -.++ .++++.|+.+..++.|.++|..+.+.+.++.... ..+.-
T Consensus 79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~~--Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 79 QLTWRNHEGFVYDLATLTPRARFRYPGE--GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEECSSC--CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEeeCCEEEEEECCcCcEEEEEeCCCC--ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 4444577899999999999887754322 2344 4577778777778999999999999888876532 24456
Q ss_pred EEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC-------------CCCeEEEEEeeCCcEEEEEee
Q 006808 165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 165 l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+.+. +|+.++..- +.|.+.|..+++.+..+.-. ..-.+.|+|+|+++.|+++|.
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6665 666555543 79999999999988876521 124688999998888888773
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.3e-06 Score=84.82 Aligned_cols=175 Identities=18% Similarity=0.253 Sum_probs=116.1
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
..+++++.++.|..||.. ++....+.. ....+.++.+.++|. ++.++ +.+..+| .+++....+......+.++.
T Consensus 148 g~l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~ 221 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA 221 (330)
T ss_dssp SCEEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCE
T ss_pred CEEEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceE
Confidence 347788888999999999 776655542 334566777777776 55555 7899999 77877777665556788899
Q ss_pred EccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC
Q 006808 167 VSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH 245 (630)
Q Consensus 167 ~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 245 (630)
+.++|.+.+.+. +.+..+|. +++.+..+......+..+.+.+++. |.+++ .++.|..+|. +++.. ..+. .
T Consensus 222 ~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~ggl~~~d~-~g~~~---~~~~--~ 292 (330)
T 3hxj_A 222 ISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGS-YDGHLYAINP-DGTEK---WNFE--T 292 (330)
T ss_dssp ECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEEC-TTCEEEEECT-TSCEE---EEEE--C
T ss_pred ECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEec-CCCCEEEECC-CCcEE---EEEE--c
Confidence 999987777665 78888874 5666666654444445566666665 44555 4778999985 44422 1222 2
Q ss_pred CceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
....+...... ++|. |..++.+|.+++...+
T Consensus 293 ~~~~~~~~~~d-----~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 293 GSWIIATPVID-----ENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp SSCCCSCCEEC-----TTCC-EEEECTTSCEEEEEC-
T ss_pred CCccccceEEc-----CCCE-EEEEcCCCeEEEEecc
Confidence 23333444443 4554 6678899999987654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-05 Score=73.66 Aligned_cols=194 Identities=8% Similarity=-0.079 Sum_probs=117.1
Q ss_pred EeEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|++++..|..+ ...+.|.+++..++.....+.... .....+++.+.. +.+
T Consensus 40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------------------~~p~~ia~d~~~--------~~l 93 (267)
T 1npe_A 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL------------------GSPEGIALDHLG--------RTI 93 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC------------------CCEEEEEEETTT--------TEE
T ss_pred EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC------------------CCccEEEEEecC--------CeE
Confidence 45889876655544 457889999987554322221100 122344444331 334
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCceeEEee-cCCCCeEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFR-ASTKGISC 164 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~~~~~~~~~-~~~~~v~~ 164 (630)
.++-...+.|.++++...... .+..........++++|++..|+.+.. .+.|..+++.. .....+. ........
T Consensus 94 yv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 94 FWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNG 171 (267)
T ss_dssp EEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEE
T ss_pred EEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcE
Confidence 444445678999998754332 222222246789999997666666553 36888888753 3333332 23346789
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
++++|++..|..+. +.|.++|+........+.+ ......+++. +.+++++....+.|.+++..+++.
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence 99999877776655 7999999875543333332 2334566654 556666665578999999987763
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.4e-06 Score=87.26 Aligned_cols=244 Identities=17% Similarity=0.115 Sum_probs=146.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccc-cccccccccccccccceeeEEecccccccccccCCc-EEEEEeC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTET-TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-LLVLGTG 94 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~l~~~~~ 94 (630)
+..++.++.|+.|..+|..+|+.+..+........ ...-+|. +. . +.. .+. .+++++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~------------v~-~--~~~-----~G~~~v~vg~~ 176 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT------------IV-K--DGK-----TGKVLLIHGSS 176 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE------------EE-E--CTT-----TCCEEEEECCB
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE------------Ee-C--CCc-----CCcEEEEEecc
Confidence 55777888899999999999999877653221100 0000010 00 0 000 011 5666553
Q ss_pred ------CCeEEEEEccCCeeeEEccCCCC----------------------------------------CCEEEEEEecC
Q 006808 95 ------GGDVLALAVSAGQLKWRLSDCHP----------------------------------------GGVSAISFATH 128 (630)
Q Consensus 95 ------~g~v~iwd~~~~~~~~~~~~~h~----------------------------------------~~v~~~~~s~~ 128 (630)
+|.|.-+|..+|+.+++...... ..-..+++.|.
T Consensus 177 ~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~ 256 (582)
T 1flg_A 177 GDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAE 256 (582)
T ss_dssp CGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETT
T ss_pred ccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCC
Confidence 68899999999998876532100 00013566777
Q ss_pred CCEEEEEeC--------------------C----CcEEEEeCCCCceeEEeec--CC--------CCeEEEEEc-cCCC-
Q 006808 129 GSCIYSAGA--------------------D----GMVCEIDPLTGSLLGKFRA--ST--------KGISCMAVS-SDGK- 172 (630)
Q Consensus 129 g~~l~s~~~--------------------d----g~v~iwd~~~~~~~~~~~~--~~--------~~v~~l~~~-p~~~- 172 (630)
...++.+.. | +.|..+|..+|+.+..++. |. .++. +... .+|+
T Consensus 257 ~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~ 335 (582)
T 1flg_A 257 TNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKI 335 (582)
T ss_dssp TTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCE
T ss_pred CCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCE
Confidence 777776653 2 5899999999999888764 21 1221 2222 4664
Q ss_pred --EEEEeC--CeEEEEECCCCceeeEeecCC-------------CC--------------------------------eE
Q 006808 173 --MLATAA--GQLKTFNCSDHKKMQKFSGHP-------------GA--------------------------------VR 203 (630)
Q Consensus 173 --~l~~~~--g~i~lwd~~~~~~~~~~~~h~-------------~~--------------------------------v~ 203 (630)
.++.++ |.++++|..+|+.+..+.... .+ -.
T Consensus 336 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~ 415 (582)
T 1flg_A 336 VKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWN 415 (582)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSS
T ss_pred EEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCC
Confidence 566666 899999999998876654321 00 01
Q ss_pred EEEEeeCCcEEEEEee--------------------------------CCCeEEEEEcCCCccccceeeeeecCCceeee
Q 006808 204 FMTFSDNGKYVLSSAV--------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMD 251 (630)
Q Consensus 204 ~l~~sp~~~~l~~~~~--------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 251 (630)
.++++|+...+++... .++.|..||+.+++.. .......+ ...
T Consensus 416 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~---W~~~~~~~--~~~ 490 (582)
T 1flg_A 416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV---WEHKEHLP--LWA 490 (582)
T ss_dssp CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE---EEEEESSC--CCS
T ss_pred CceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE---EEecCCCC--Ccc
Confidence 3456665555544321 2578999999888744 22222211 111
Q ss_pred eEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc
Q 006808 252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA 292 (630)
Q Consensus 252 ~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 292 (630)
.... ..+..++.++.||.++.||.++|+.+-..+.
T Consensus 491 g~~~------tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 491 GVLA------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCEE------ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceE------eCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 1111 2356788899999999999999998876554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-05 Score=78.16 Aligned_cols=250 Identities=14% Similarity=0.084 Sum_probs=136.0
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEeccccccccccccccc--ccccccccceeeEEecccccccccccCCcE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR--LEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++|+++|+++.++..++.|..|+..++... .+............... ............+++.+. ...
T Consensus 24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---------~g~ 93 (322)
T 2fp8_A 24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---------NNQ 93 (322)
T ss_dssp EECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---------TTE
T ss_pred EEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCC---------CCc
Confidence 489999997888888899999998765543 22211000000000000 000000112334554432 234
Q ss_pred EEEEeCCCeEEEEEccCCeeeE--EccCC-CCCCEEEEEEec-CCCEEEEEeC-----------------CCcEEEEeCC
Q 006808 89 LVLGTGGGDVLALAVSAGQLKW--RLSDC-HPGGVSAISFAT-HGSCIYSAGA-----------------DGMVCEIDPL 147 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~--~~~~~-h~~~v~~~~~s~-~g~~l~s~~~-----------------dg~v~iwd~~ 147 (630)
|+++...+.|..+|..++.... ....+ .......+++.+ +|+..++-.. ++.|..||..
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 6667666668888887654321 11111 113578899999 8976665432 3678899987
Q ss_pred CCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCc--eeeEeecCCCCeEEEEEeeCCcEEEEEee---
Q 006808 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAV--- 219 (630)
Q Consensus 148 ~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--- 219 (630)
+++....... ......++|+|+|++|.++. +.|+.|++.... ....+....+ ...+++.++|+++++...
T Consensus 174 ~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~ 251 (322)
T 2fp8_A 174 TKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELD 251 (322)
T ss_dssp TTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETT
T ss_pred CCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccc
Confidence 7764332221 23346799999998766653 799999987531 1222221223 788999999986665431
Q ss_pred ------CCCeEEEEEcCCCccccceeeeeecCC--ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 220 ------GERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 220 ------~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..+.|..++.. ++.. ..+..... ......+++ .++.+.++....+.|..+++.
T Consensus 252 ~~~~~~~~~~v~~~d~~-G~~~---~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 252 GNMHGRVDPKGIKFDEF-GNIL---EVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp SSTTSCEEEEEEEECTT-SCEE---EEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC-
T ss_pred ccccCCCccEEEEECCC-CCEE---EEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEecc
Confidence 03457777764 3321 12222111 122233333 345555555567788888864
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-05 Score=73.31 Aligned_cols=182 Identities=13% Similarity=0.059 Sum_probs=122.5
Q ss_pred EEEEEeC---CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEEeecC-CCCe
Q 006808 88 LLVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-TKGI 162 (630)
Q Consensus 88 ~l~~~~~---~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-~~~v 162 (630)
.|+.++. ++.|.++|+.+++.+..+..+.......+++. |+.++.+. .++.+.++|..+++.+.++... ..
T Consensus 33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~-- 108 (266)
T 2iwa_A 33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD-- 108 (266)
T ss_dssp EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--
T ss_pred eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--
Confidence 4566554 46799999999998877643332334456664 55665554 6789999999999999998754 22
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecC--C---CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--P---GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
...++++|+.++++. +.|.++|..+.+.+..+.-. . ..++.+.|. +|. +++....++.|.+.|..+++..
T Consensus 109 -g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 109 -GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp -CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEE
T ss_pred -eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEE
Confidence 234566777776665 89999999998887776522 1 236788888 674 5555545789999999998754
Q ss_pred cceeeeeec-----------CCceeeeeEEecCCccCCCCCEE-EEEecCCcEEEEEcCCc
Q 006808 236 SASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNI 284 (630)
Q Consensus 236 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~ 284 (630)
....+. ........+.+. |+++.+ +++...+.+++.++...
T Consensus 186 ---~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 186 ---GWILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ---EEEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ---EEEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEecc
Confidence 122221 112345566666 787655 55556788888887554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.2e-06 Score=88.74 Aligned_cols=198 Identities=14% Similarity=0.177 Sum_probs=125.5
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+..+++++.++.|.-+|..+|+.+..+.............. ....... ..+ +..+++++.+|
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~--~~~------------~~~v~v~~~dg 127 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCC----DAVNRGV--ALW------------GDKVYVGTLDG 127 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTT----CSCCCCC--EEE------------BTEEEEECTTS
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccc----cCCccce--EEE------------CCEEEEEcCCC
Confidence 45677777889999999999999988764322111000000 0000000 001 56788999999
Q ss_pred eEEEEEccCCeeeEEccCCCC---CCEEE-EEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCC-C-----
Q 006808 97 DVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST-K----- 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~---~~v~~-~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~-~----- 160 (630)
.|..+|..+|+.++++..... ..+.+ ..+ .+..++.++. +|.|..+|..+|+.+..+.... .
T Consensus 128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY 205 (668)
T ss_dssp EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence 999999999999887754221 11111 111 1335555543 5899999999999988775311 0
Q ss_pred -------------------------CeEEEEEccCCCEEEEeC--C-------------------eEEEEECCCCceeeE
Q 006808 161 -------------------------GISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK 194 (630)
Q Consensus 161 -------------------------~v~~l~~~p~~~~l~~~~--g-------------------~i~lwd~~~~~~~~~ 194 (630)
....+++.|+...++++. + .|..+|..+|+.+-.
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~ 285 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH 285 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE
T ss_pred cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE
Confidence 112468888777777765 3 399999999998877
Q ss_pred eec--CC-------CCeEEEEEeeCCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 195 ~~~--h~-------~~v~~l~~sp~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+.. |. .+.....+..+|+ .++.++ .+|.++++|..+++..
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred eecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence 753 22 2333334445675 466655 7999999999998754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-05 Score=81.38 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=118.9
Q ss_pred CCEEEEeeC-CCcEEEEEC-CCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC
Q 006808 17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG 94 (630)
Q Consensus 17 g~~las~s~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~ 94 (630)
+..++.++. ++.|.-+|. .+|+.+..+........... +. +....... ..+ +..+++++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~--~~--~~~~~~~~--~~~------------~~~v~v~~~ 123 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAV--MC--CDVVDRGL--AYG------------AGQIVKKQA 123 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGG--CT--TCSCCCCC--EEE------------TTEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccc--cc--cccccccc--EEE------------CCEEEEEeC
Confidence 345666666 899999999 89999887753221100000 00 00000000 000 567889999
Q ss_pred CCeEEEEEccCCeeeEEccCCC-C--CCEEE-EEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCCCC---
Q 006808 95 GGDVLALAVSAGQLKWRLSDCH-P--GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG--- 161 (630)
Q Consensus 95 ~g~v~iwd~~~~~~~~~~~~~h-~--~~v~~-~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~--- 161 (630)
++.|..+|..+|+.+++..... . ..+.+ ... .+..++.++. ++.|..+|..+|+.+..+......
T Consensus 124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred CCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 9999999999999987764321 0 01111 111 1345666654 789999999999988776542210
Q ss_pred -----------------------------------eEEEEEccCCCEEEEeCC------------------eEEEEECCC
Q 006808 162 -----------------------------------ISCMAVSSDGKMLATAAG------------------QLKTFNCSD 188 (630)
Q Consensus 162 -----------------------------------v~~l~~~p~~~~l~~~~g------------------~i~lwd~~~ 188 (630)
...+++.+....++.+.+ .|..+|..+
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 023566676556655542 599999999
Q ss_pred CceeeEeec--CC--------CCeEEEEEeeCCc---EEEEEeeCCCeEEEEEcCCCccc
Q 006808 189 HKKMQKFSG--HP--------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 189 ~~~~~~~~~--h~--------~~v~~l~~sp~~~---~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
|+.+-.+.. |. .++. +...++|+ .++.++ .+|.++++|..+++..
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI 339 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeC-CCcEEEEEECCCCCEE
Confidence 998877652 21 2221 23335775 344554 6899999999988754
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00045 Score=67.80 Aligned_cols=230 Identities=7% Similarity=-0.038 Sum_probs=133.0
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
+|+.+.. ..|+..++.++.....+.. ......+.|.+.. +.++++-...+.|
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-------------------~~~p~g~~~d~~~--------~~ly~~D~~~~~I 54 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-------------------LRNVVALDTEVAS--------NRIYWSDLSQRMI 54 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-------------------CSSEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-------------------CCceEEEEEEeCC--------CEEEEEECCCCcE
Confidence 3444433 5789999887765443321 1123456665542 3344444556789
Q ss_pred EEEEccC---CeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 99 LALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 99 ~iwd~~~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
..+++.. +.....+....-..+.++++.+.+..|+ +-...+.|.++++........+.........++++|.+..|
T Consensus 55 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~l 134 (316)
T 1ijq_A 55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 134 (316)
T ss_dssp EEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred EEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEE
Confidence 9999876 1222222222223568899987555554 54567899999987544333333334567899999966655
Q ss_pred EEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-CCce
Q 006808 175 ATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAV 248 (630)
Q Consensus 175 ~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~ 248 (630)
+.+. +.|..+++. |.....+ ...-.....++++|++..|+.+....+.|..+++...... .+.... ....
T Consensus 135 y~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~---~~~~~~~~~~~ 210 (316)
T 1ijq_A 135 YWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAH 210 (316)
T ss_dssp EEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSS
T ss_pred EEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE---EEeecCCccCC
Confidence 4443 578888874 4333333 2233567899999988888777766789999998754322 122211 1112
Q ss_pred eeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
... +++. .+..+++-...+.|..++..+++.+
T Consensus 211 P~g-iav~------~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 211 PFS-LAVF------EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEE-EEEE------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred cEE-EEEE------CCEEEEEECCCCeEEEEeCCCCcce
Confidence 222 2222 2455555556778998887666543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-05 Score=84.48 Aligned_cols=191 Identities=11% Similarity=0.029 Sum_probs=108.0
Q ss_pred EeEEC-CCCCEEEEeeC-CC----cEEEEECCCC-cEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 10 LTSFS-PALDYFAICSG-DA----RIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 10 ~~~fs-~dg~~las~s~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
..+|| |||++||.+.. +| +|+++|+.+| +.+.. ........+.|.+.
T Consensus 178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--------------------~~~~~~~~~~WspD------ 231 (751)
T 2xe4_A 178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--------------------KVSGTNGEIVWGPD------ 231 (751)
T ss_dssp EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--------------------CEEEECSCCEECSS------
T ss_pred eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--------------------cccCceeeEEEecC------
Confidence 45899 99999986643 22 4999999988 53210 00001224556554
Q ss_pred ccCCcEEEEEeCC-----CeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCc-e
Q 006808 83 KLGSSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGS-L 151 (630)
Q Consensus 83 ~~~~~~l~~~~~~-----g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---dg~v~iwd~~~~~-~ 151 (630)
++.|+....+ ..|+++++.++.. ...+...+.....++.|+|||++|+..+. ...|.++|+.++. .
T Consensus 232 ---g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 232 ---HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp ---TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred ---CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 4445554443 2588888877642 11221123345678899999998776542 3468888988752 2
Q ss_pred e--EEe-ecCCCCeEEEEEccCCCEEEEeC------CeEEEEECCCCceeeE-eecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 152 L--GKF-RASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 152 ~--~~~-~~~~~~v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
. ..+ ........++.|+.++.+++.+. ..|..+++.++..... +..|...+.--.+++.+.+|+.....+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~ 388 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA 388 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence 2 333 32334556666555444444433 3788888865322223 333443333233455566776666567
Q ss_pred Ce--EEEEEc
Q 006808 222 RY--IALWRT 229 (630)
Q Consensus 222 ~~--i~vwd~ 229 (630)
+. |.++++
T Consensus 389 g~~~l~~~dl 398 (751)
T 2xe4_A 389 GLTRIWTMMA 398 (751)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEEec
Confidence 75 555564
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-05 Score=74.23 Aligned_cols=157 Identities=11% Similarity=0.083 Sum_probs=103.7
Q ss_pred CEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceee
Q 006808 119 GVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ 193 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~ 193 (630)
...++.|+ ++.++.+.+.+| .|+.+|+.+++.+..+.... ......+.+++..|.... +.+.+||..+.+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 35889998 666666666665 89999999999998887543 333433344455555544 899999999999999
Q ss_pred EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce---eeeeEEecCCccCCCCCEEEEE
Q 006808 194 KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGVDDAGLYVLAI 270 (630)
Q Consensus 194 ~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~s~ 270 (630)
+++... ....+++++..|+.+. .++.|.++|..+.+... ......... .+.-+.+ .+|...+..
T Consensus 122 ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~---~I~V~~~g~~~~~lNELe~------~~G~lyan~ 188 (262)
T 3nol_A 122 SFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR---TITVTAHGEELPELNELEW------VDGEIFANV 188 (262)
T ss_dssp EEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---EEECEETTEECCCEEEEEE------ETTEEEEEE
T ss_pred EEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---EEEeccCCccccccceeEE------ECCEEEEEE
Confidence 987432 2234457788887766 47889999998876441 112211111 1222333 256544444
Q ss_pred ecCCcEEEEEcCCccccccc
Q 006808 271 SETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 271 s~dg~i~iwd~~~~~~~~~~ 290 (630)
-.++.|.+.|..+++.+...
T Consensus 189 w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 189 WQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp TTSSEEEEECTTTCBEEEEE
T ss_pred ccCCeEEEEECCCCcEEEEE
Confidence 45789999999998875543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-05 Score=73.96 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=102.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeE
Q 006808 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQK 194 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~ 194 (630)
....++.|+ ++.++.+.+.+|.|+.+|+.+++.+..+ ... ........+++..|.... +.+.+||..+.+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 445789997 3556677788889999999999998887 333 333322333444444443 8999999999999999
Q ss_pred eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCce--eeeeEEecCCccCCCCCEEEEEec
Q 006808 195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 195 ~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
++.... -..+ .++++.|+.+. .++.|.++|..+.+.... +........ .+.-+.+ .+|...+..-.
T Consensus 132 i~~~~e-GwGL--t~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~--I~V~~~g~~v~~lNeLe~------~dG~lyanvw~ 199 (268)
T 3nok_A 132 TRYSGE-GWGL--CYWNGKLVRSD-GGTMLTFHEPDGFALVGA--VQVKLRGQPVELINELEC------ANGVIYANIWH 199 (268)
T ss_dssp EECSSC-CCCE--EEETTEEEEEC-SSSEEEEECTTTCCEEEE--EECEETTEECCCEEEEEE------ETTEEEEEETT
T ss_pred EeCCCc-eeEE--ecCCCEEEEEC-CCCEEEEEcCCCCeEEEE--EEeCCCCcccccccccEE------eCCEEEEEECC
Confidence 874322 2333 46788888876 588999999988764411 111111111 1222333 25654444445
Q ss_pred CCcEEEEEcCCccccccc
Q 006808 273 TGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 273 dg~i~iwd~~~~~~~~~~ 290 (630)
++.|.+.|..+++.+...
T Consensus 200 s~~I~vIDp~TG~V~~~I 217 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVI 217 (268)
T ss_dssp CSEEEEECTTTCBEEEEE
T ss_pred CCeEEEEeCCCCcEEEEE
Confidence 779999999998876544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0002 Score=70.07 Aligned_cols=188 Identities=13% Similarity=0.041 Sum_probs=107.7
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++|+++|+++++-..++.|..||... .....+.. . .....+++.+. ++++
T Consensus 36 gia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~------------------~~p~gia~~~d---------G~l~ 86 (306)
T 2p4o_A 36 NLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-E------------------GKVSGLAFTSN---------GDLV 86 (306)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-S------------------SEEEEEEECTT---------SCEE
T ss_pred eEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-C------------------CCceeEEEcCC---------CcEE
Confidence 458999998777766788999998764 33322221 1 12334444432 5544
Q ss_pred EEEeCC-C-eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce-eEEe-------e--c
Q 006808 90 VLGTGG-G-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKF-------R--A 157 (630)
Q Consensus 90 ~~~~~~-g-~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~-~~~~-------~--~ 157 (630)
++.... + .|..++..+++...............++..+++..+++-..++.|..+|...++. +... . .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 443332 2 4777787777653222112223345666655554444444688999999875431 1110 0 0
Q ss_pred CCCCeEEEEEccCCCEEEEeC---CeEEEEECCC-Cce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
.-.....+ +|++..|+++. +.|+.|++.. ++. ...+.. ......+++.++|+++++.. ..+.|.+++..
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~ 241 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD 241 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECTT
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECCC
Confidence 11234555 88887776665 7999999874 332 122221 13456789999997655543 57789999875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00072 Score=68.40 Aligned_cols=200 Identities=6% Similarity=-0.069 Sum_probs=120.1
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~ 146 (630)
...++|.+.. +.++++-...+.|..+++..+.....+. .......++++.+.+..| ++-...+.|.+.++
T Consensus 118 ~~gl~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~ 188 (386)
T 3v65_B 118 AIALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188 (386)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred cEEEEEecCC--------CeEEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence 3456676543 3444455566789999988765432222 222346788998755555 45556678888887
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~ 222 (630)
........+.........++++|.+..|+.+. +.|..+++............-.....|+|+|++..|+.+....+
T Consensus 189 dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~ 268 (386)
T 3v65_B 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268 (386)
T ss_dssp TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence 65443333333335678999999766666554 57888887543322222233345789999998887877776678
Q ss_pred eEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.|..+++...... .+.. ........+..+ .+..+++-...+.|..++..+|+.+
T Consensus 269 ~I~~~d~dG~~~~---~~~~-~~~~~P~giav~-------~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 269 VIERANLDGSHRK---AVIS-QGLPHPFAITVF-------EDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEEECTTSCSCE---EEEC-SSCSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEEEeCCCCeeE---EEEE-CCCCCceEEEEE-------CCEEEEeeCCCCeEEEEECCCCcce
Confidence 8999998754322 1111 111122222222 3445555556778888886666543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0015 Score=64.90 Aligned_cols=199 Identities=6% Similarity=-0.063 Sum_probs=118.9
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~ 146 (630)
...++|.+.. +.++++-...+.|..+++..+.....+. .......++++.+.+..| ++-...+.|.+.++
T Consensus 75 ~~~l~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 75 AIALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp EEEEEEETTT--------TEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eEEEEEeccc--------cEEEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence 3456776543 3344444566789999988765432222 222456789998755554 55556778999998
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
........+.........++++|.+..|+.+. +.|..+++... ....+ ...-.....++|+|++..|+.+....
T Consensus 146 dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence 75443333333335678999999666655554 56888887543 33333 22334578999999888887777667
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
+.|..+++...... .+.. ........+..+ .+...++-...+.|..++..+|+.+
T Consensus 225 ~~I~~~~~dG~~~~---~~~~-~~~~~P~giav~-------~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 225 HVIERANLDGSHRK---AVIS-QGLPHPFAITVF-------EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp TEEEEEETTSCSCE---EEEC-SSCSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CEEEEEeCCCCceE---EEEe-CCCCCceEEEEE-------CCEEEEecCCCCeEEEEEccCCCcc
Confidence 88999998764322 1111 111112222222 2444555555778888876566543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.2e-05 Score=69.53 Aligned_cols=158 Identities=10% Similarity=0.019 Sum_probs=102.2
Q ss_pred CCEEEEEEecCCCEEEEEeCC--CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCcee
Q 006808 118 GGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM 192 (630)
Q Consensus 118 ~~v~~~~~s~~g~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~ 192 (630)
....++.|++ +.++.+.+.+ ..|+.+|+.+++.+..+..... .....+.+.+..|.... +.+.+||..+.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4577999986 5555566665 4899999999999988775433 23333333345555444 89999999999999
Q ss_pred eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCc---eeeeeEEecCCccCCCCCEEEE
Q 006808 193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDDAGLYVLA 269 (630)
Q Consensus 193 ~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~s 269 (630)
.+++..... . .+.+++..|+++. .++.|.++|..+.+... ........ ..+.-+.+ .+|...+.
T Consensus 99 ~ti~~~~~G-w--glt~dg~~L~vSd-gs~~l~~iDp~t~~~~~---~I~V~~~g~~~~~lNeLe~------~~G~lyan 165 (243)
T 3mbr_X 99 ARFRYPGEG-W--ALTSDDSHLYMSD-GTAVIRKLDPDTLQQVG---SIKVTAGGRPLDNLNELEW------VNGELLAN 165 (243)
T ss_dssp EEEECSSCC-C--EEEECSSCEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEE------ETTEEEEE
T ss_pred EEEeCCCCc-e--EEeeCCCEEEEEC-CCCeEEEEeCCCCeEEE---EEEEccCCcccccceeeEE------eCCEEEEE
Confidence 998743322 3 3446787777776 58899999998876441 11221111 11222223 24555544
Q ss_pred EecCCcEEEEEcCCccccccc
Q 006808 270 ISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 270 ~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.-.+..|.+.|..+++.+...
T Consensus 166 vw~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEE
Confidence 445779999999999875543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0015 Score=66.35 Aligned_cols=232 Identities=6% Similarity=-0.047 Sum_probs=135.5
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
+|+.+. ...|+..++........+.. ......++|.+.. +.++++-...+.|
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-------------------~~~~~~l~~d~~~--------~~lywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-------------------LRNVVALDTEVAS--------NRIYWSDLSQRMI 136 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECS-------------------CSCEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccc-------------------cCcceEEeeeecc--------CceEEEecCCCeE
Confidence 444443 36788888776544332221 1133456666543 3334444456778
Q ss_pred EEEEccCCe---eeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEE
Q 006808 99 LALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174 (630)
Q Consensus 99 ~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l 174 (630)
+.+++.... ....+.........++++.+.++. +++-...+.|.+.++........+.........|+++|.+..|
T Consensus 137 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 216 (400)
T 3p5b_L 137 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 216 (400)
T ss_dssp EEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred EEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence 888886521 111222223456889999985444 4555567889999987555444444344467899999966555
Q ss_pred EEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec-CCcee
Q 006808 175 ATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVF 249 (630)
Q Consensus 175 ~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~ 249 (630)
+.+. +.|...++........+...-.....|+++|++..|+.+....+.|..+++...... .+.... .....
T Consensus 217 y~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~~~~~~l~~P 293 (400)
T 3p5b_L 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHP 293 (400)
T ss_dssp EEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE---EEEECSSTTSSE
T ss_pred EEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE---EEEeCCCCCCCC
Confidence 5544 578888875433322223333567899999988888887766789999998765432 122211 11222
Q ss_pred eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
..+..+ .+..+.+-...+.|..+|..+|+.+.
T Consensus 294 ~gl~v~-------~~~lywtd~~~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 294 FSLAVF-------EDKVFWTDIINEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEEEEE-------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred EEEEEe-------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence 222223 24455555667889999977776544
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00061 Score=66.79 Aligned_cols=201 Identities=6% Similarity=-0.048 Sum_probs=119.5
Q ss_pred eeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeC
Q 006808 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP 146 (630)
Q Consensus 68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~ 146 (630)
...+.|.+.. +.++.+-...+.|..+++..+.....+....-....++++.+.+..| ++-...+.|.++++
T Consensus 37 ~~~ld~d~~~--------~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 37 AAAVDFVFSH--------GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEGGG--------TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEeCC--------CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 3456776653 34444555567799999876632111111122356789998755554 55556788999998
Q ss_pred CCCceeEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 147 ~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
........+.........+++.|.+..|+.+. +.|..+++.. .....+ ...-.....++|+|++..|+.+....
T Consensus 109 dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 109 DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCC
Confidence 65433222333445678999999655554443 5788888753 333333 22234568999999888887777677
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
+.|..+++...... .+.. ........+..+ .+..+.+-...+.|..++..+|+...
T Consensus 188 ~~I~~~d~dG~~~~---~~~~-~~~~~P~glav~-------~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 188 NFIHKSNLDGTNRQ---AVVK-GSLPHPFALTLF-------EDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp TEEEEEETTSCSCE---EEEC-SCCSCEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CEEEEEcCCCCceE---EEec-CCCCCceEEEEe-------CCEEEEEecCCCeEEEEECCCCCceE
Confidence 89999998754322 1111 111222222222 23445555567789999987776543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0027 Score=71.05 Aligned_cols=245 Identities=9% Similarity=0.119 Sum_probs=144.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .++..+++|.+ ..|+.++-|..|+..++.... +..... .. +-....+.++....
T Consensus 310 ~~i--~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~~-~~----------~l~~~~V~~i~~d~-------- 366 (795)
T 4a2l_A 310 RSV--RSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKN-IRNIPY-KN----------SLSDNVVSCIVEDK-------- 366 (795)
T ss_dssp SCE--EEEEECTTSCE-EEEESSSCEEEECGGGGSSEE-ECCCTT-SS----------SCSCSSEEEEEECT--------
T ss_pred CcE--EEEEEeCCcCE-EEEECCCCeEEeCCCcccceE-EcCCCC-CC----------CCCCCeeEEEEECC--------
Confidence 356 44477788764 456666778888866554322 211000 00 11122344444332
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccC-------CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~-------~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
...|.+|+.++-|..|+..++....-... -....|.++...++|+.|+.|+.++-+..||..+++......
T Consensus 367 --~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~ 444 (795)
T 4a2l_A 367 --DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQ 444 (795)
T ss_dssp --TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECT
T ss_pred --CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeec
Confidence 33477888888899999988765422211 123579999998888767778877779999988776433221
Q ss_pred ----cCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeec------CCCCeEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 157 ----ASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 157 ----~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.....|.++...++|.+.+.+.+-+.+||..+++....... +...|.++...++|...+.+ . +-|..
T Consensus 445 ~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~-~Gl~~ 521 (795)
T 4a2l_A 445 RNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG--E-EGLSV 521 (795)
T ss_dssp TTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE--S-SCEEE
T ss_pred CCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe--C-CceEE
Confidence 12457899999998887776666688999887654322111 23568999988888765543 3 45888
Q ss_pred EEcCCCccccceee-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 227 WRTDGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 227 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
|+..+.... .... .....+...+.++... ++|...+ ++.. -|..||..++
T Consensus 522 ~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d-----~~g~lWi-gT~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 522 FKQEGLDIQ-KASILPVSNVTKLFTNCIYEA-----SNGIIWV-GTRE-GFYCFNEKDK 572 (795)
T ss_dssp EEEETTEEE-ECCCSCSCGGGGSCEEEEEEC-----TTSCEEE-EESS-CEEEEETTTT
T ss_pred EeCCCCeEE-EecCCCCCCCCCCeeEEEEEC-----CCCCEEE-EeCC-CceeECCCCC
Confidence 887665420 0000 0001122234445444 5666544 4444 5788887655
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00033 Score=74.80 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=95.8
Q ss_pred CcEEEEEeCCC----------------eEEEEEccCCeeeEEccCCCC---------CCEEEEEEe-cCC---CEEEEEe
Q 006808 86 SSLLVLGTGGG----------------DVLALAVSAGQLKWRLSDCHP---------GGVSAISFA-THG---SCIYSAG 136 (630)
Q Consensus 86 ~~~l~~~~~~g----------------~v~iwd~~~~~~~~~~~~~h~---------~~v~~~~~s-~~g---~~l~s~~ 136 (630)
..++++++.++ .|..+|..+|+.++.+...|. .++. +... .+| ..++.++
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~ 330 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD 330 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence 56777777663 799999999999887764432 1222 2222 467 4677788
Q ss_pred CCCcEEEEeCCCCceeEEeecCC-------------CCe--------------------------EEEEEccCCCEEEEe
Q 006808 137 ADGMVCEIDPLTGSLLGKFRAST-------------KGI--------------------------SCMAVSSDGKMLATA 177 (630)
Q Consensus 137 ~dg~v~iwd~~~~~~~~~~~~~~-------------~~v--------------------------~~l~~~p~~~~l~~~ 177 (630)
.+|.++++|..+|+.+....... .++ ..++++|+..++++.
T Consensus 331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence 99999999999999877654211 011 235566655444331
Q ss_pred ----------------------------------------C-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 178 ----------------------------------------A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 178 ----------------------------------------~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
. |.+..||+.+++.+-+... ..+...-.+...+..++.
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~ 489 (599)
T 1w6s_A 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFY 489 (599)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEE
T ss_pred ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEE
Confidence 2 5788899999987766642 122221122334566666
Q ss_pred EeeCCCeEEEEEcCCCccc
Q 006808 217 SAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~~~~~ 235 (630)
++ .|+.|+.||..+++..
T Consensus 490 gt-~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 490 GT-LDGYLKARDSDTGDLL 507 (599)
T ss_dssp EC-TTSEEEEEETTTCCEE
T ss_pred EC-CCCeEEEEECCCCCEE
Confidence 65 6999999999999855
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00045 Score=67.98 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=112.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeE-EccCC-----------------CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKW-RLSDC-----------------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~-~~~~~-----------------h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~ 147 (630)
+.+++++..++.|..|+..++.... ..... ....+.++++.+++..|+.+...+.+..+|..
T Consensus 30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~ 109 (322)
T 2fp8_A 30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSE 109 (322)
T ss_dssp CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTT
T ss_pred CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCC
Confidence 5667888889999999988765431 11000 01357899999833356666555558889876
Q ss_pred CCceeEEeec-----CCCCeEEEEEcc-CCCEEEEeC-------------------CeEEEEECCCCceeeEeecCCCCe
Q 006808 148 TGSLLGKFRA-----STKGISCMAVSS-DGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAV 202 (630)
Q Consensus 148 ~~~~~~~~~~-----~~~~v~~l~~~p-~~~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v 202 (630)
++.. ..+.. .......+++.| +|.++++.. +.|..||..+++...... .....
T Consensus 110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p 187 (322)
T 2fp8_A 110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVP 187 (322)
T ss_dssp CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCC
T ss_pred CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccC
Confidence 5532 22221 112468899999 998777642 468888987775432222 22334
Q ss_pred EEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec----------
Q 006808 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------- 272 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~---------- 272 (630)
..++|+|++++|+++....+.|.+|++........ ..+. .... ..-+++. ++|.+.++...
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~-~~~g--P~gi~~d-----~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLV-KIPN--PGNIKRN-----ADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEE-ECSS--EEEEEEC-----TTSCEEEEEEEETTSSTTSCE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEE-eCCC--CCCeEEC-----CCCCEEEEecCcccccccCCC
Confidence 67999999997777755568899999875321100 1111 1112 3444555 78876666544
Q ss_pred CCcEEEEEc
Q 006808 273 TGVCYIWYG 281 (630)
Q Consensus 273 dg~i~iwd~ 281 (630)
.+.|..+|.
T Consensus 259 ~~~v~~~d~ 267 (322)
T 2fp8_A 259 DPKGIKFDE 267 (322)
T ss_dssp EEEEEEECT
T ss_pred ccEEEEECC
Confidence 355666664
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00021 Score=78.05 Aligned_cols=241 Identities=10% Similarity=0.030 Sum_probs=125.8
Q ss_pred eeEeEECC-CCCEEEEeeCCC-----------cEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecc
Q 006808 8 DILTSFSP-ALDYFAICSGDA-----------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS 75 (630)
Q Consensus 8 ~~~~~fs~-dg~~las~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~ 75 (630)
..++++.| +|++++.|+.++ .+.+||..+++........ . .+ ...+...++..
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----------~---~~-~~~~~~~~~~~ 252 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----------T---KH-DMFCPGISMDG 252 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----------C---SC-CCSSCEEEECT
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-----------C---CC-CCccccccCCC
Confidence 34667888 888888887543 5788888876532210000 0 00 00011112111
Q ss_pred cccccccccCCcEEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CC-----CcEEEEeCCC
Q 006808 76 VDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-----GMVCEIDPLT 148 (630)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d-----g~v~iwd~~~ 148 (630)
++.++++|+. +..+.+||+.++.....-.......-.++++.++|+.++.|+ .+ ..+.+||..+
T Consensus 253 ---------~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 253 ---------NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp ---------TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ---------CCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 1667777774 457999999988654221111111223455667899888888 34 4699999887
Q ss_pred CceeEEeec------CCCCeEEEEEccCCCEEEEeC-----------CeEEEEECCCCceeeEeecCC---------CCe
Q 006808 149 GSLLGKFRA------STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHP---------GAV 202 (630)
Q Consensus 149 ~~~~~~~~~------~~~~v~~l~~~p~~~~l~~~~-----------g~i~lwd~~~~~~~~~~~~h~---------~~v 202 (630)
.+-.. +.. .... ....+..++..++.++ ..+..||..+.........+. ..-
T Consensus 324 ~~W~~-~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 324 KTWTS-LPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TEEEE-ETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred Cccee-CCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence 65322 110 0000 0011223344444432 467889988765433322121 123
Q ss_pred EEEEEee-CCcEEEEEeeCCC-----------eEEEEEcCCCccccceeee--eecCCceeeeeEEecCCccCCCCCEEE
Q 006808 203 RFMTFSD-NGKYVLSSAVGER-----------YIALWRTDGVKKQSASCVL--AMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 203 ~~l~~sp-~~~~l~~~~~~d~-----------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
.++.|.. +++.++.+|. ++ .|.+||..+..-. ... .+.... ....+... |+++.++
T Consensus 402 ~av~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~mp~~R-~~~~~~~l-----~~g~i~v 471 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNT---VFASNGLYFAR-TFHTSVVL-----PDGSTFI 471 (656)
T ss_dssp EEEEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEE---EECTTCCSSCC-BSCEEEEC-----TTSCEEE
T ss_pred ceEeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCee---EEccCCCCCCc-ccCCeEEC-----CCCCEEE
Confidence 4455544 5666666663 22 5777777665421 111 122221 12222222 7889999
Q ss_pred EEecC-----------CcEEEEEcCCc
Q 006808 269 AISET-----------GVCYIWYGQNI 284 (630)
Q Consensus 269 s~s~d-----------g~i~iwd~~~~ 284 (630)
.|+.+ ..+.+||..+.
T Consensus 472 ~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 472 TGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp ECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred ECCcccCcCcCCCCcccceEEEcCCCC
Confidence 88764 45788887654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0017 Score=60.71 Aligned_cols=189 Identities=7% Similarity=0.063 Sum_probs=112.8
Q ss_pred eEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
++|+|++..| ++...++.|...|.. ++.+..+.-. +. .+.-.+++... +.++
T Consensus 32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------g~--~D~EGIa~~~~---------g~~~ 84 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------FV--KDLETIEYIGD---------NQFV 84 (255)
T ss_dssp EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------SC--SSEEEEEECST---------TEEE
T ss_pred eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------CC--CChHHeEEeCC---------CEEE
Confidence 4999987655 456668889999987 8887776411 11 22334444432 4444
Q ss_pred EEEeCCCeEEEEEccCCee---eEEc--c---CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCC---CCceeEEee--
Q 006808 90 VLGTGGGDVLALAVSAGQL---KWRL--S---DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFR-- 156 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~---~~~~--~---~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~---~~~~~~~~~-- 156 (630)
++.-.++.+.++++..... +... . ........+++|+|.++.|+++.......+|.+. ....+..+.
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~ 164 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK 164 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence 4444567788888765432 1111 1 1234567999999999888877765544444443 111222221
Q ss_pred -----cCCCCeEEEEEccCCCEE-EEeC--CeEEEEECCCCceeeEeecCC---------CCeEEEEEeeCCcEEEEEee
Q 006808 157 -----ASTKGISCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 157 -----~~~~~v~~l~~~p~~~~l-~~~~--g~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~l~~~~~ 219 (630)
.+...+.+++++|....+ +... +.+.++|.. |+.+..+.-.. ...-.|+|.++|+.++ ++
T Consensus 165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vs- 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VS- 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EE-
T ss_pred hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-Ec-
Confidence 123467899999965444 4444 788999965 55555443221 2568899999998544 45
Q ss_pred CCCeEEEEEc
Q 006808 220 GERYIALWRT 229 (630)
Q Consensus 220 ~d~~i~vwd~ 229 (630)
+.+.++++.-
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 5666666543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0032 Score=63.58 Aligned_cols=195 Identities=10% Similarity=-0.078 Sum_probs=111.6
Q ss_pred EeEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|++.+..|... ...+.|..++...+.....+......+ ..+++.+.. +.+
T Consensus 120 gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p------------------~glavd~~~--------g~l 173 (386)
T 3v65_B 120 ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP------------------GGLAVDWVH--------DKL 173 (386)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC------------------CCEEEETTT--------TEE
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc------------------cEEEEEeCC--------CeE
Confidence 45888755544443 456778888876554332222111111 112222211 344
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CC-CcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
.++-...+.|.++++...... .+....-....++++.|.+..|+.+. .. +.|..+++............-.....|+
T Consensus 174 Y~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla 252 (386)
T 3v65_B 174 YWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT 252 (386)
T ss_dssp EEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred EEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence 444455677888887654432 22223335689999999777665554 34 6788888764333222333334578999
Q ss_pred EccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|+|++..|..+. +.|..+++........+.........+++ ..+ .++.+....+.|..++..+++
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTTCC
T ss_pred EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECC-EEEEeeCCCCeEEEEECCCCc
Confidence 998777776665 78999998644332223333445677887 334 444445467788888865554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00093 Score=71.40 Aligned_cols=137 Identities=18% Similarity=0.311 Sum_probs=89.4
Q ss_pred CeEEEEEccCCeeeEEccCC-CC--------CCEEEEEEe-cCCC---EEEEEeCCCcEEEEeCCCCceeEEeecCCC--
Q 006808 96 GDVLALAVSAGQLKWRLSDC-HP--------GGVSAISFA-THGS---CIYSAGADGMVCEIDPLTGSLLGKFRASTK-- 160 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~-h~--------~~v~~~~~s-~~g~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-- 160 (630)
+.|..+|..+|+.++.+... |. .++. +... .+|+ .++.++.+|.++++|..+|+.+..+.....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 57999999999998887543 31 1222 2222 4674 688899999999999999998776543210
Q ss_pred -----------Ce--------------------------------EEEEEccCCCEEEEe--------------------
Q 006808 161 -----------GI--------------------------------SCMAVSSDGKMLATA-------------------- 177 (630)
Q Consensus 161 -----------~v--------------------------------~~l~~~p~~~~l~~~-------------------- 177 (630)
++ ..++++|+..++++.
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 134566654444331
Q ss_pred ---------------CCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 178 ---------------AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 178 ---------------~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
.|.|+.||+.+++.+-+...+. ++..-.....+..+++++ .|+.++.||.++++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~-~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGT-GDGYFKAFDAKSGKEL 520 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEEC-CCCcEEEEECCCCCEE
Confidence 1678999999999877665332 222212223455666666 6999999999999855
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0043 Score=69.36 Aligned_cols=239 Identities=12% Similarity=0.071 Sum_probs=141.6
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.| .++...++|.+ -.|+.++-|..|+..++....-......... +-....+.++...+.
T Consensus 358 ~V--~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~v~~i~~d~~-------- 416 (795)
T 4a2l_A 358 VV--SCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESAR----------GIGSNNIKAVYVDEK-------- 416 (795)
T ss_dssp SE--EEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEETT--------
T ss_pred ee--EEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCccc----------CCCCccEEEEEEcCC--------
Confidence 46 44477788764 4466677799999887765432211000000 000112334433221
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccC----CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec---
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--- 157 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~----~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~--- 157 (630)
+.+|.+|+.++-|.+||..+++.. .+.. .+...|.++...++|.. +.|+.+ -+.+||..+++.......
T Consensus 417 -g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~~-Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 417 -KSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNL-WLGTLS-ALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp -TTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCE-EEEESS-CEEEEETTTTEEEECCBCTTC
T ss_pred -CCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCE-EEEecC-ceeEEeCCCCeEEEccccccc
Confidence 444788888788999999887654 2221 13457999998888874 444454 488999877654332211
Q ss_pred ---CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEee-------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEE
Q 006808 158 ---STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227 (630)
Q Consensus 158 ---~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vw 227 (630)
....|.++...++|.+.+.+.+-+..||..+++. .+. .+...|.++...++|...+++. . -|..|
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~--~-Gl~~~ 567 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR--E-GFYCF 567 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES--S-CEEEE
T ss_pred cccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC--C-CceeE
Confidence 2357899999999987776666788899877654 332 1234688999888888665442 3 58889
Q ss_pred EcCCCccccceeeeee--cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 228 RTDGVKKQSASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+..+.+.. .+.. +.+...+..+... ++|.+.+++ . +-|..|+..++
T Consensus 568 d~~~~~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lWi~t-~-~Gl~~~~~~~~ 615 (795)
T 4a2l_A 568 NEKDKQIK----RYNTTNGLPNNVVYGILED-----SFGRLWLST-N-RGISCFNPETE 615 (795)
T ss_dssp ETTTTEEE----EECGGGTCSCSCEEEEEEC-----TTSCEEEEE-T-TEEEEEETTTT
T ss_pred CCCCCcEE----EeCCCCCCchhheEEEEEC-----CCCCEEEEc-C-CceEEEcCCCC
Confidence 98765422 1111 1122334444443 566655544 3 45677887654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0042 Score=61.71 Aligned_cols=144 Identities=10% Similarity=-0.057 Sum_probs=88.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe-CC-CcEEEEeCCCCceeEEe-ecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~d-g~v~iwd~~~~~~~~~~-~~~~~~v 162 (630)
+.+.++-...+.|.+.++...... .+....-....++++.|.+..++.+. .. +.|..+++... ....+ ...-...
T Consensus 128 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~P 205 (349)
T 3v64_C 128 DKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWP 205 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCE
T ss_pred CeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCc
Confidence 344445555677999988755432 22223335679999999666655543 44 77888887643 33333 2233457
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..++|+|++..|..+. +.|..+++........+.........+++. .+ .++.+....+.|..++..+++
T Consensus 206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence 8999999777776665 789999986433222233334456777773 34 445555457788888755554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0029 Score=61.63 Aligned_cols=182 Identities=13% Similarity=0.097 Sum_probs=107.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-C-cEEEEeCCCCceeEEeec-CCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G-MVCEIDPLTGSLLGKFRA-STKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g-~v~iwd~~~~~~~~~~~~-~~~~v 162 (630)
+.++++-..++.|..||....... .+. ....+.++++.++|+++++.... + .|..+|..+++....... .....
T Consensus 43 g~lyv~d~~~~~I~~~d~~g~~~~-~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 119 (306)
T 2p4o_A 43 GTIFVTNHEVGEIVSITPDGNQQI-HAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL 119 (306)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEE-EEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred CCEEEEeCCCCeEEEECCCCceEE-EEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence 555555557889999998764332 221 23468999999999865554332 2 477778777775433322 12234
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCce-eeEee---------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFS---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~-~~~~~---------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
..++..+++..+++.. +.|+.+|..+++. +.... +.-.....+ +|++++|+++....+.|..|++.
T Consensus 120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence 5566666665555543 8999999876531 11110 111234555 88998888877677899999987
Q ss_pred C-CccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 231 G-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
. +........... .....+++. ++|.+.++....+.|.+|+.
T Consensus 198 ~~g~~~~~~~~~~~----~~P~gi~vd-----~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 198 STDKPGEPEIFVEQ----TNIDDFAFD-----VEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp TTSCBCCCEEEEES----CCCSSEEEB-----TTCCEEEECBTTCCEEEECT
T ss_pred CCCCCCccEEEecc----CCCCCeEEC-----CCCCEEEEeCCCCeEEEECC
Confidence 5 321100111111 112334444 77877666666778888875
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0033 Score=58.81 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=122.5
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP 146 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~ 146 (630)
....++|.+.. +.++++...++.|...|+. ++...++..+-....-++++.+++.++++.-.++.+.++++
T Consensus 28 ~lSGla~~~~~--------~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 28 NISSLTWSAQS--------NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CEEEEEEETTT--------TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CcceeEEeCCC--------CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 46667777653 5566667788889999998 77766664333356889999988876666656788999887
Q ss_pred CCCce---eEEee------cCCCCeEEEEEccCCCEEEEeC--C--eEEEEEC-CCCceeeEee-------cCCCCeEEE
Q 006808 147 LTGSL---LGKFR------ASTKGISCMAVSSDGKMLATAA--G--QLKTFNC-SDHKKMQKFS-------GHPGAVRFM 205 (630)
Q Consensus 147 ~~~~~---~~~~~------~~~~~v~~l~~~p~~~~l~~~~--g--~i~lwd~-~~~~~~~~~~-------~h~~~v~~l 205 (630)
..... +.... ........++|+|.+..|.++. . .|+.|+- .....+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65432 22222 1233668999999987777765 3 5555551 1111122221 123457899
Q ss_pred EEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecC-------CceeeeeEEecCCccCCCCCEEEEEecCCcEEE
Q 006808 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI 278 (630)
Q Consensus 206 ~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~i 278 (630)
+|+|....+++.+...+.|.++|.... .. ..+.+.. .-....-+++. ++|+.. ..++-+.++.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~---~~~~L~~g~~~l~~~~~qpEGia~d-----~~G~ly-IvsE~n~~y~ 248 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VI---GEMSLTKGSRGLSHNIKQAEGVAMD-----ASGNIY-IVSEPNRFYR 248 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EE---EEEECSTTGGGCSSCCCSEEEEEEC-----TTCCEE-EEETTTEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EE---EEEEcCCccCCcccccCCCCeeEEC-----CCCCEE-EEcCCceEEE
Confidence 999987777777767888999997654 22 1222221 11233445565 888744 4477677776
Q ss_pred EEc
Q 006808 279 WYG 281 (630)
Q Consensus 279 wd~ 281 (630)
|.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.011 Score=57.82 Aligned_cols=178 Identities=12% Similarity=0.048 Sum_probs=107.5
Q ss_pred eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeCCC---CceeEE-eecCCCCeEEEEE
Q 006808 93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLT---GSLLGK-FRASTKGISCMAV 167 (630)
Q Consensus 93 ~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~~~---~~~~~~-~~~~~~~v~~l~~ 167 (630)
+....|+..|+.+......+ .....+.+++|++.++.|+.+ ...+.|..+++.. +..... +...-.....+++
T Consensus 7 ~~~~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav 84 (316)
T 1ijq_A 7 TNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 84 (316)
T ss_dssp ECBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred ECCCeEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence 34456899999887654333 234568999999876655544 4568999999875 122222 3222245678999
Q ss_pred ccCCCEEEEe-C--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC-CeEEEEEcCCCccccceeeeee
Q 006808 168 SSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 168 ~p~~~~l~~~-~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d-~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.+.+..|+.+ . +.|.++++........+.........+++.|.+.+|+.+.... +.|..+++...... .+.
T Consensus 85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~----~~~- 159 (316)
T 1ijq_A 85 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----SLV- 159 (316)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE----EEE-
T ss_pred eecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE----EEE-
Confidence 8755555444 3 7999999865433222333345678999999777666665333 67888887654321 111
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcC
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQ 282 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~ 282 (630)
...-.....+++. +++..|..+. ..+.|..+|..
T Consensus 160 ~~~~~~P~gla~d-----~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 160 TENIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCceEEEEe-----ccCCEEEEEECCCCeEEEEecC
Confidence 1122233445555 6666665554 46789999875
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0016 Score=66.74 Aligned_cols=148 Identities=12% Similarity=0.118 Sum_probs=85.6
Q ss_pred EeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|+| ++..|..+...+.|+.+|..++....... .. .....++|.+. ++.
T Consensus 141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~------------------~~P~~ia~d~~---------G~~ 192 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GL------------------SKVRTICWTHE---------ADS 192 (430)
T ss_dssp EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CC------------------SCEEEEEECTT---------SSE
T ss_pred EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CC------------------CCcceEEEeCC---------CCE
Confidence 458998 45555555544789999987766443222 11 12234455443 554
Q ss_pred EEEEeC-CC----eEEEEEccCCee-eEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEeecC-CC
Q 006808 89 LVLGTG-GG----DVLALAVSAGQL-KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-TK 160 (630)
Q Consensus 89 l~~~~~-~g----~v~iwd~~~~~~-~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~ 160 (630)
|+++.. ++ .+.+++...... ...+. ......+++++| +|..+++-..++.|..++...+.....+... ..
T Consensus 193 lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 555554 22 244444332211 01111 123456788999 6666666667789999998876543333221 23
Q ss_pred CeEEEEEccCCCEEEEeC---CeEEEEECC
Q 006808 161 GISCMAVSSDGKMLATAA---GQLKTFNCS 187 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---g~i~lwd~~ 187 (630)
....++|+|+|++|+.+. +.|+.++..
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 467899999999666654 789888765
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0023 Score=62.24 Aligned_cols=189 Identities=14% Similarity=0.241 Sum_probs=116.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC--
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-- 94 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-- 94 (630)
..+++.....+-+.|||+ +|+.++.+.. +..+.+...+.+ ++ ..+. -.++++...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~---~l------------~g~~-----~dla~as~R~~ 96 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDF---PL------------NGKK-----VDIAAASNRSE 96 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEE---EE------------TTEE-----EEEEEEEECST
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccc---cc------------CCce-----EeEEEEeCCCC
Confidence 345555556788999999 7998887753 222222222210 00 0000 112233333
Q ss_pred -CCeEEEEEc--cCCeeeEEccC-----CCC-CCEEEEEE--ecC-CC-EEEEEeCCCcEEEEeCC-------CCceeEE
Q 006808 95 -GGDVLALAV--SAGQLKWRLSD-----CHP-GGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL-------TGSLLGK 154 (630)
Q Consensus 95 -~g~v~iwd~--~~~~~~~~~~~-----~h~-~~v~~~~~--s~~-g~-~l~s~~~dg~v~iwd~~-------~~~~~~~ 154 (630)
+++|.+|++ .++. +..+.. +.. ..+..+++ +|. +. ++++...+|.+..|++. +++.+++
T Consensus 97 ~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~ 175 (355)
T 3amr_A 97 GKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA 175 (355)
T ss_dssp TCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence 467999966 4443 323311 011 45677888 664 44 57888889999999883 3466777
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEEEECC-----CCceeeEee-cC-CCCeEEEEEe--eCCc-EEEEEeeCCC
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFS-GH-PGAVRFMTFS--DNGK-YVLSSAVGER 222 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~-----~~~~~~~~~-~h-~~~v~~l~~s--p~~~-~l~~~~~~d~ 222 (630)
|.. ...+..+.+.+....|+.+- .-|..|+.. +++.+..+. ++ ...+..|++. ++++ ||++++..+.
T Consensus 176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~ 254 (355)
T 3amr_A 176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS 254 (355)
T ss_dssp EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence 775 45788899999888888887 346666754 344554442 22 2468888885 4555 7888876788
Q ss_pred eEEEEEcC
Q 006808 223 YIALWRTD 230 (630)
Q Consensus 223 ~i~vwd~~ 230 (630)
.+.+||..
T Consensus 255 s~~Vydr~ 262 (355)
T 3amr_A 255 SYAIYDRQ 262 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99999986
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.015 Score=64.05 Aligned_cols=192 Identities=8% Similarity=-0.065 Sum_probs=112.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.++++-...+.|+.+++.... ....+.........+|++.+.++.|+. -...+.|.+.++........+......
T Consensus 436 ~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~ 515 (791)
T 3m0c_C 436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 515 (791)
T ss_dssp TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC
Confidence 3344444455778888886531 111222223356778999987765554 456789999998754433333334456
Q ss_pred eEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
...|++.|.+..|+.+. +.|...++........+...-.....|++.+.+..|+.+....+.|..+++......
T Consensus 516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-- 593 (791)
T 3m0c_C 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-- 593 (791)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--
T ss_pred cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE--
Confidence 78999999755555554 578888886443333333333578899999888778777656778999998765432
Q ss_pred eeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 238 SCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 238 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.+... ......+.+..+ .+..+++-...+.|...+..+|+.+
T Consensus 594 -~v~~~~~~l~~P~glav~-------~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 594 -TILEDEKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp -EEEECTTTTSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred -EEecCCCccCCCCEEEEe-------CCEEEEEECCCCEEEEEeCCCCcce
Confidence 12211 111222333333 2333344445677888887666543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0012 Score=73.08 Aligned_cols=152 Identities=9% Similarity=0.019 Sum_probs=91.6
Q ss_pred ceeeEEec-ccccccccccCCcEEEEEe-CCC----eEEEEEccCC-eeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-
Q 006808 67 DYTCMKWL-SVDRKKKRKLGSSLLVLGT-GGG----DVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD- 138 (630)
Q Consensus 67 ~~~~~~w~-~~~~~~~~~~~~~~l~~~~-~~g----~v~iwd~~~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d- 138 (630)
......|. |. +++|+.+. .+| .|+++|+.++ +.+.... .....+++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PD---------G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~ 242 (751)
T 2xe4_A 175 DVMEVKPAPPE---------HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDE 242 (751)
T ss_dssp EEEEEEECTTT---------TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECT
T ss_pred EEeeeEecCCC---------CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECC
Confidence 44556676 44 55555443 334 3999999998 6321111 1113468899999887776654
Q ss_pred ----CcEEEEeCCCCce--eEEeec-CCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCc-ee--eEe-ecCCCCe
Q 006808 139 ----GMVCEIDPLTGSL--LGKFRA-STKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHK-KM--QKF-SGHPGAV 202 (630)
Q Consensus 139 ----g~v~iwd~~~~~~--~~~~~~-~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~-~~--~~~-~~h~~~v 202 (630)
..|+.+++.+++. ...+.. .......+.|+|||++|+... ..|+++|+.++. .. ..+ .......
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 3688889887653 233332 223467889999999888754 478999998752 22 333 3334455
Q ss_pred EEEEEeeCCcEEEEEeeCC----CeEEEEEcCC
Q 006808 203 RFMTFSDNGKYVLSSAVGE----RYIALWRTDG 231 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~ 231 (630)
.++.|+. |..|+..+..+ ..|..+++.+
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 5555544 55555544333 2577777654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.82 E-value=0.019 Score=58.07 Aligned_cols=145 Identities=7% Similarity=-0.080 Sum_probs=89.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.+.++-...+.|.+.++........+ ...-....++++.|.+..|+.+. ..+.|...++........+...-....
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~ 249 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 249 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred CceEEEECCCCeEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence 444445556678888888765443222 22334589999999766666554 246888888864433333333335678
Q ss_pred EEEEccCCCEEEEeC---CeEEEEECCCCceeeEeec--CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.|+++|++..|..+. +.|..+|+........... .-....++++. +..++.+....+.|..++..+++
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCC
Confidence 999999877777765 6899999864432222222 22345566663 34455544456778888866665
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.79 E-value=0.011 Score=57.63 Aligned_cols=144 Identities=10% Similarity=-0.058 Sum_probs=90.0
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEe-ecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~-~~~~~~v 162 (630)
+.+.++-...+.|.++++...... .+.........++++.|.+..|+.+. ..+.|...++.. .....+ ...-...
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~P 168 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWP 168 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCE
T ss_pred CeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCc
Confidence 344444455678999998754332 22223345689999999766666555 357888888753 333333 2223456
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
..++|+|++..|..+. +.|..+|+.... ...+ .+.......+++.. ..++.+....+.|..++..+++.
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCCS
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCCc
Confidence 8999999777777665 799999986433 3333 32344566777753 34444454677888888876653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0048 Score=63.26 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=104.2
Q ss_pred EeEECCC--CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
.++|+|+ +..|..+...+.|+.++..++....... ... ....++|.+. +.
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~------------------~P~giavd~d---------G~ 194 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIG------------------QCADVNFTLN---------GD 194 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCS------------------CEEEEEECTT---------CC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCC------------------CccEEEECCC---------CC
Confidence 4599985 3344444333899999988777654332 111 2234444433 45
Q ss_pred EEEEEeCCC----e-EEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEe-ecC-C
Q 006808 88 LLVLGTGGG----D-VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RAS-T 159 (630)
Q Consensus 88 ~l~~~~~~g----~-v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~-~ 159 (630)
|+++...+ . +..++...+....... ..-....+++++| +|.++++-..++.|+.+|..++.....+ ... .
T Consensus 195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp -EEEEECCSCTTSEEEEEECGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred -EEEEcCCCCcccceEEEEECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44444322 1 3333332221100011 1123456788999 6665555556788999998877663332 221 1
Q ss_pred CCeEEEEEccCCCEEEEeC---CeEEEEECC--CCce--eeEeecC---------------CCCeEEEEE---------e
Q 006808 160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSGH---------------PGAVRFMTF---------S 208 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g~i~lwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------s 208 (630)
..-..++|+|+++.|..+. +.|+.++.. ++.. ...+.+. -.....+++ .
T Consensus 273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 2335799999999666654 689998865 2321 1222221 123567888 5
Q ss_pred eCCcEEEEEeeCCCeEEEEEc
Q 006808 209 DNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~ 229 (630)
++|..+ ++....+.|+.++.
T Consensus 353 ~~g~ly-vaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 353 DEYDFY-FCDRDSHTVRVLTP 372 (433)
T ss_dssp CCEEEE-EEETTTTEEEEECT
T ss_pred CCCcEE-EEECCCCEEEEECC
Confidence 556544 44445778888875
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=80.52 Aligned_cols=191 Identities=7% Similarity=-0.043 Sum_probs=107.1
Q ss_pred EEEEE-eCCCeEEEEEccC----CeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 88 LLVLG-TGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 88 ~l~~~-~~~g~v~iwd~~~----~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
.|+.+ ...+.|+.+++.+ .... .+.........++++.+.+.. +++-...+.|.++++........+......
T Consensus 419 ~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~ 497 (699)
T 1n7d_A 419 RIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK 497 (699)
T ss_dssp EEEECCTTTTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC
T ss_pred eEEEEecCCCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC
Confidence 34444 3456788888875 2221 222111234567888764444 444456788999998755433333322345
Q ss_pred eEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccc
Q 006808 162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~ 236 (630)
...++++|.+.+|+.+. +.|..+++... ....+ ...-.....|+|+|++..|+.+....+.|.++++......
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~- 575 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK- 575 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-
Confidence 67889999766555544 57777776432 22222 2223446789999987777776666788999998754322
Q ss_pred ceeeeeec-CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 237 ASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.+.... .......+..+ . +..+++....+.|..++..+++.+...
T Consensus 576 --~~~~~~~~~~~P~glavd------~-~~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 576 --TILEDEKRLAHPFSLAVF------E-DKVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp --EECCCSSSCSSCCCCEEE------T-TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred --EEEecCCcCCCceEeEEE------C-CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence 111111 11111222222 2 244444455778999998777665443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.019 Score=55.80 Aligned_cols=197 Identities=13% Similarity=0.191 Sum_probs=114.8
Q ss_pred eeEEecc-cccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC----CCE--E-EEEe-C--
Q 006808 69 TCMKWLS-VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH----GSC--I-YSAG-A-- 137 (630)
Q Consensus 69 ~~~~w~~-~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~----g~~--l-~s~~-~-- 137 (630)
....|.. .++. .++++.....+-+.+||+ .|+.+..+.. +.++.+..-|+ |+. + ++.. .
T Consensus 28 dpavw~~~~dp~------~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~ 97 (355)
T 3amr_A 28 DPAIWLDPKTPQ------NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEG 97 (355)
T ss_dssp EEEEECCSSCGG------GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTT
T ss_pred CccEecCCCCCC------ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCC
Confidence 3466874 3443 455666666778999999 7777766532 56777777663 222 2 3333 3
Q ss_pred CCcEEEEeC--CCCceeEEeec------CC-CCeEEEEE--ccC-CC-EEEEeC--CeEEEEEC---C----CCceeeEe
Q 006808 138 DGMVCEIDP--LTGSLLGKFRA------ST-KGISCMAV--SSD-GK-MLATAA--GQLKTFNC---S----DHKKMQKF 195 (630)
Q Consensus 138 dg~v~iwd~--~~~~~~~~~~~------~~-~~v~~l~~--~p~-~~-~l~~~~--g~i~lwd~---~----~~~~~~~~ 195 (630)
+++|.+|++ .++. +..+.. .. ..++.+|+ +|. +. ++++.. |.+..|.+ . +.+.+++|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999976 3333 444421 11 45677887 774 54 444444 78888877 2 33567777
Q ss_pred ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC---ceeeeeEEecCCccCCCCC-EEEEEe
Q 006808 196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGL-YVLAIS 271 (630)
Q Consensus 196 ~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~l~s~s 271 (630)
.. .+.+..+...+...+|+++- ++.-|..++...........+...... ...-.+..+. .+++. +|++.+
T Consensus 177 ~l-gsq~EgcvvDd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~----~~~g~gyLivSs 250 (355)
T 3amr_A 177 KM-NSQTEGMAADDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY----AADGKGYLMASS 250 (355)
T ss_dssp EC-SSCEEEEEEETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE----CGGGCEEEEEEE
T ss_pred cC-CCCcceEEEcCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe----cCCCCEEEEEEc
Confidence 64 45788899998888888876 676666666443221101122222111 1222222221 14444 677777
Q ss_pred c-CCcEEEEEcC
Q 006808 272 E-TGVCYIWYGQ 282 (630)
Q Consensus 272 ~-dg~i~iwd~~ 282 (630)
. ++.+.+||..
T Consensus 251 QG~~s~~Vydr~ 262 (355)
T 3amr_A 251 QGNSSYAIYDRQ 262 (355)
T ss_dssp GGGTEEEEEESS
T ss_pred CCCCEEEEEECC
Confidence 4 7799999985
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0083 Score=66.87 Aligned_cols=242 Identities=9% Similarity=0.047 Sum_probs=139.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++...++|. |-.|+.++-|..|+..++.... +........ +. +-....+.++.-.. ...
T Consensus 316 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~-----~~---~l~~~~v~~i~~d~----------~g~ 375 (781)
T 3v9f_A 316 RYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMN-----ES---SLSNKVVSSVCDDG----------QGK 375 (781)
T ss_dssp EEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCC-----SS---CCSSSCEEEEEECT----------TSC
T ss_pred EEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCccccc-----cC---CCCCcceEEEEEcC----------CCC
Confidence 4447777775 4456656678888876654332 210000000 00 00112233443322 334
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEcc---CCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee---cCCCCe
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR---ASTKGI 162 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~---~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~~v 162 (630)
|.+|+.++-|..|+..++... .+. ......|.++...++|. |+.|+.++-+..+|..+++.. .+. .....|
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v 452 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDV 452 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCE
T ss_pred EEEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeE
Confidence 778887777999998765442 111 12335789998887775 556777677899998776543 232 134579
Q ss_pred EEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecC-----CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 163 SCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH-----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.++...++|.+.+...+-+..||..+++........ ...|.++...++|...+.+ .++-|..|+..+.+..
T Consensus 453 ~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~~~Gl~~~~~~~~~~~-- 528 (781)
T 3v9f_A 453 RVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT--FGGGVGIYTPDMQLVR-- 528 (781)
T ss_dssp EEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE--SSSCEEEECTTCCEEE--
T ss_pred EEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE--cCCCEEEEeCCCCeEE--
Confidence 999999888776666677899998876543322212 3578999988888766544 2344778887665422
Q ss_pred eeeeee--cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 238 SCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 238 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+.. ..+...+.++... ++|...+ ++..|.+..||..+++
T Consensus 529 --~~~~~~~l~~~~i~~i~~d-----~~g~lWi-~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 529 --KFNQYEGFCSNTINQIYRS-----SKGQMWL-ATGEGLVCFPSARNFD 570 (781)
T ss_dssp --EECTTTTCSCSCEEEEEEC-----TTSCEEE-EETTEEEEESCTTTCC
T ss_pred --EccCCCCCCCCeeEEEEEC-----CCCCEEE-EECCCceEEECCCCCc
Confidence 1111 1122334444443 5666544 4456665888876553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.02 Score=63.09 Aligned_cols=144 Identities=7% Similarity=-0.085 Sum_probs=89.8
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
.+.++-...+.|.+.++...... .+....-....+|++.|.+.+|+.+.. .+.|...++........+...-.....
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred cEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence 44455556678999998755433 332233456899999997666665542 367888888644433333333356789
Q ss_pred EEEccCCCEEEEeC---CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 165 l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|++++.+..|+.+. +.|..+++........+... -....+|++. +.+|+.+....+.|...+..+++
T Consensus 563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence 99998777777665 68999998654333333321 2234456653 44666665556777777766654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0014 Score=71.53 Aligned_cols=224 Identities=6% Similarity=-0.067 Sum_probs=120.4
Q ss_pred eEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 11 TSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 11 ~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
+++.++|+++++|+. ++.+.+||..+++.... .. .+...........+. +.++
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~----------------~~~~R~~~s~~~~~d---------g~iy 301 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PD----------------MQVARGYQSSATMSD---------GRVF 301 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CC----------------CSSCCSSCEEEECTT---------SCEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-CC----------------CCccccccceEEecC---------CeEE
Confidence 477889999999985 56899999887654321 10 000111111122211 6677
Q ss_pred EEEe-CC-----CeEEEEEccCCeeeEE-------ccCCCCCCEEEEEEecCCCEEEEEeCC---------CcEEEEeCC
Q 006808 90 VLGT-GG-----GDVLALAVSAGQLKWR-------LSDCHPGGVSAISFATHGSCIYSAGAD---------GMVCEIDPL 147 (630)
Q Consensus 90 ~~~~-~~-----g~v~iwd~~~~~~~~~-------~~~~h~~~v~~~~~s~~g~~l~s~~~d---------g~v~iwd~~ 147 (630)
++|+ .+ ..+.+||+.++..... +...... ..+..++..++.++.+ ..+..||..
T Consensus 302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~----~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ----GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT----GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred EEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc----ceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 7777 33 4599999988765422 1111000 1122344444455444 356788887
Q ss_pred CCceeEEeecCC---------CCeEEEEEcc-CCCEEEEeC--C-----------eEEEEECCCCceeeEe--ecCCCCe
Q 006808 148 TGSLLGKFRAST---------KGISCMAVSS-DGKMLATAA--G-----------QLKTFNCSDHKKMQKF--SGHPGAV 202 (630)
Q Consensus 148 ~~~~~~~~~~~~---------~~v~~l~~~p-~~~~l~~~~--g-----------~i~lwd~~~~~~~~~~--~~h~~~v 202 (630)
+..-........ ..-.++.|.. +++++++|+ + .|.+||..+..-.... ..+....
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~ 457 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence 765433222111 1223444443 677777776 1 6788888776543322 1122222
Q ss_pred -EEEEEeeCCcEEEEEeeCC----------CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 203 -RFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 203 -~~l~~sp~~~~l~~~~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
.+++..|+++.++.+|... ..+.+||..+.+-. .............+..+. |+|+.++.|+
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---~~~~~~~~R~~hs~a~ll-----~dg~v~v~GG 529 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---KQNPNSIVRVYHSISLLL-----PDGRVFNGGG 529 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---ECCCCSSCCCTTEEEEEC-----TTSCEEEEEC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee---ecCCCCCccccccHhhcC-----CCcEEEecCC
Confidence 3445668999988887421 46899998775422 111122222222233333 7899888887
Q ss_pred c
Q 006808 272 E 272 (630)
Q Consensus 272 ~ 272 (630)
.
T Consensus 530 ~ 530 (656)
T 1k3i_A 530 G 530 (656)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0079 Score=61.64 Aligned_cols=141 Identities=11% Similarity=0.115 Sum_probs=87.4
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCce-eEEeecCCC
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSL-LGKFRASTK 160 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~~~~-~~~~~~~~~ 160 (630)
..|+++...+.|+.+++.++.... +. .......+++|+++|+ |+.+...+ .+...+...+.. ...+. ...
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~-~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~ 228 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDI-KT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NAR 228 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEE-EC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECS
T ss_pred CEEEEEeCCCCEEEEECCCCEEEE-ee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccC
Confidence 346666555889999998877653 32 2345689999999999 55544321 233333222111 11222 223
Q ss_pred CeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEe-e-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-S-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 161 ~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~-~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
....++++| +|.++++-. +.|+.++..++.....+ . +....-..++|+|++++|+.+....+.|+.++...
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 456789999 665554443 78999998877653333 2 11223357999999997777766678899988763
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.013 Score=56.60 Aligned_cols=152 Identities=10% Similarity=0.059 Sum_probs=101.5
Q ss_pred eeEEecccccccccccCCcEEEEEe-CCCeEEEEEccCCeeeEEccCC----CC--CCEEEEEE---ecCCCEEEEEe--
Q 006808 69 TCMKWLSVDRKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDC----HP--GGVSAISF---ATHGSCIYSAG-- 136 (630)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~----h~--~~v~~~~~---s~~g~~l~s~~-- 136 (630)
.+..|.... ..+++++ ..|.|..|++..+........+ .. ..+.++.| .|+++++++..
T Consensus 16 E~~~wd~~~---------g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 16 EDTIYDRTR---------QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp SCEEEETTT---------TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCccCcCCC---------CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 366776653 3455555 7899999999866543232222 11 13689999 58876666543
Q ss_pred -----------CCCcEEEEeCC---CCceeEEeec-------------CCCCeEEEEEccCCCEEEEeC---CeEEEEEC
Q 006808 137 -----------ADGMVCEIDPL---TGSLLGKFRA-------------STKGISCMAVSSDGKMLATAA---GQLKTFNC 186 (630)
Q Consensus 137 -----------~dg~v~iwd~~---~~~~~~~~~~-------------~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~ 186 (630)
.+..|..+|+. +++.+..... .......+++.++|+..++++ +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 25779999999 7877655431 112478999999999888776 45666665
Q ss_pred CCCceeeEee------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 187 SDHKKMQKFS------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 187 ~~~~~~~~~~------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
. |+.+..+. ......+.|+++|+|..|++..+ .+.|..+|+..
T Consensus 167 d-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 D-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp T-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred C-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 4 33333321 11123679999999999999885 89999999884
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.029 Score=62.42 Aligned_cols=236 Identities=15% Similarity=0.121 Sum_probs=136.6
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .++...++|.+ ..|+.++-|.+|+..++.... +.... +.....+.++...+
T Consensus 363 ~~v--~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~--------------~~~~~~v~~i~~d~-------- 416 (781)
T 3v9f_A 363 KVV--SSVCDDGQGKL-WIGTDGGGINVFENGKRVAIY-NKENR--------------ELLSNSVLCSLKDS-------- 416 (781)
T ss_dssp SCE--EEEEECTTSCE-EEEEBSSCEEEEETTEEEEEC-C-------------------CCCSBEEEEEECT--------
T ss_pred cce--EEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEE-ccCCC--------------CCCCcceEEEEECC--------
Confidence 345 34467777764 445555668888876543321 11000 00112233443322
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccC--CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC---
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--- 158 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--- 158 (630)
...|.+|+.++-|..|+..+++.. .+.. .....|.++...++|. |+.|+. +-+..||..+++........
T Consensus 417 --~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~ 491 (781)
T 3v9f_A 417 --EGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQ 491 (781)
T ss_dssp --TSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred --CCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence 334677887777999999887654 2221 1346799998887775 555656 45889998776544332222
Q ss_pred --CCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeec----CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 159 --TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 159 --~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
...|.++...++|.+.+... +-+..||..+++. ..+.. ....|.++...++|...++ + ..|.+..||..+
T Consensus 492 ~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 492 LLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-T-GEGLVCFPSARN 568 (781)
T ss_dssp CSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-E-TTEEEEESCTTT
T ss_pred cccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-E-CCCceEEECCCC
Confidence 35789999999998877765 5688899876643 33321 1346889988888876554 3 355548888776
Q ss_pred Cccccceeeeee--cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 232 VKKQSASCVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 232 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
.+.. .+.. +-+...+..+... ++|.+.+ ++..| |..|+..+.
T Consensus 569 ~~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lW~-~t~~G-l~~~~~~~~ 612 (781)
T 3v9f_A 569 FDYQ----VFQRKEGLPNTHIRAISED-----KNGNIWA-STNTG-ISCYITSKK 612 (781)
T ss_dssp CCCE----EECGGGTCSCCCCCEEEEC-----SSSCEEE-ECSSC-EEEEETTTT
T ss_pred CcEE----EccccCCCCCceEEEEEEC-----CCCCEEE-EcCCc-eEEEECCCC
Confidence 5422 1111 1122233344443 5666444 44555 666776544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.033 Score=53.67 Aligned_cols=201 Identities=14% Similarity=0.169 Sum_probs=117.9
Q ss_pred EeEECCCCCEEEEee-CCCcEEEEECCCCcEEEE-ecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 10 ~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
+++|++....|..++ ..++|..|+...+..... +.+... .+........+.|...++. +.
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~------------~g~~~~~~sGl~~~~~D~~------gr 78 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASS------------NGDGEQQMSGLSLLTHDNS------KR 78 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCC------------SSCCSEEEEEEEESSSSSC------CE
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccc------------cCCCcceeeEEEEeccCCC------Cc
Confidence 458888666666666 689999999876644332 111000 0111223356777422221 44
Q ss_pred EEEEEe-------------CCCeEEEEEcc---CCeeeEEccC-----C-------CCCCEEEEEEecCCCEEEEEeCC-
Q 006808 88 LLVLGT-------------GGGDVLALAVS---AGQLKWRLSD-----C-------HPGGVSAISFATHGSCIYSAGAD- 138 (630)
Q Consensus 88 ~l~~~~-------------~~g~v~iwd~~---~~~~~~~~~~-----~-------h~~~v~~~~~s~~g~~l~s~~~d- 138 (630)
++++.. .+..|..||+. +++.+..... + -.....+++..++|+..++++.-
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~ 158 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM 158 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence 555433 24669999999 7776543321 0 11358899999999999988888
Q ss_pred CcEEEEeCCCCceeEEeec------CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee-eEee--cC---CCCeEE
Q 006808 139 GMVCEIDPLTGSLLGKFRA------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFS--GH---PGAVRF 204 (630)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~------~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~-~~~~--~h---~~~v~~ 204 (630)
+.|..++.. |+.+..+.. .....+.|+++|+|..|++.. |.+..+|+.+.... .... +. -.....
T Consensus 159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dg 237 (334)
T 2p9w_A 159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEK 237 (334)
T ss_dssp CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEE
T ss_pred CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccc
Confidence 888777755 333333321 112467999999999888876 89999998743220 1111 21 112344
Q ss_pred E-EEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 205 M-TFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 205 l-~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
+ .--.+|+.++++....+.+.+.+.
T Consensus 238 ilp~~~~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 238 IVTVPVGNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEECS
T ss_pred ccccccCCEEEEEEcCCCCEEEEECC
Confidence 3 333577776665544555444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.017 Score=55.75 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=91.4
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCe---eeEEcc-CCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCce
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQ---LKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL 151 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~---~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~~ 151 (630)
+.+++.|+.+ ..+.+||+.++. ...... .........+.+ ++..++.|+.+ ..+.+||+.+.+-
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 5556666654 358999998876 321111 111111222222 56666666643 3588899876642
Q ss_pred e--EEeecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeE--eecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 152 L--GKFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 152 ~--~~~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
. ..+........++. .++++++.|+ ..+.+||+.+.+-... ++........+ .-+++.++.+|..
T Consensus 141 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~ 216 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA--LLNDHIYVVGGFD 216 (301)
T ss_dssp EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBC
T ss_pred EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE--EECCEEEEEeCCC
Confidence 2 22221111222222 2677777765 4689999887653221 21111111222 2356666666632
Q ss_pred ----CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-----CcEEEEEcCCc
Q 006808 221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (630)
Q Consensus 221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 284 (630)
-..+.+||+.+.+-. .+..+........+.. -++..++.|+.+ ..+.+||..+.
T Consensus 217 ~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 217 GTAHLSSVEAYNIRTDSWT---TVTSMTTPRCYVGATV-------LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SSSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCcccceEEEEeCCCCcEE---ECCCCCCcccceeEEE-------ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 246889998876522 2222222221112222 245666666654 35677777654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.13 Score=55.11 Aligned_cols=227 Identities=6% Similarity=-0.022 Sum_probs=131.8
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
+|+.+ ..+.|+..++.+......+.- . + -.....++|.+.. +.++++-..++.|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-~--------------~--~~~~~~l~~d~~~--------~~lywtD~~~~~I 61 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPL-T--------------G--VKEASALDFDVTD--------NRIYWTDISLKTI 61 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCC-C--------------S--CSCEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEc-C--------------C--CCceEEEEEECCC--------CEEEEEECCCCeE
Confidence 44444 446788889876543322210 0 0 0123355665543 3444445566789
Q ss_pred EEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEe
Q 006808 99 LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177 (630)
Q Consensus 99 ~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~ 177 (630)
..+++........+ ........++++.+.++.|+ +-...+.|.+.++........+...-.....|++.|....|..+
T Consensus 62 ~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 62 SRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWT 140 (628)
T ss_dssp EEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred EEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEe
Confidence 88888765433222 22224577899987666554 44556789999986543322232334467899999954455544
Q ss_pred C----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeE
Q 006808 178 A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR 253 (630)
Q Consensus 178 ~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (630)
. +.|...++.... ...+...-.....|++++++..|+.+....+.|..+++...... ++. ........+.
T Consensus 141 D~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~----v~~-~~l~~P~gla 214 (628)
T 4a0p_A 141 EWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE----VIA-DDLPHPFGLT 214 (628)
T ss_dssp ECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----EEE-ECCSCEEEEE
T ss_pred CCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE----Eee-ccCCCceEEE
Confidence 3 578888875443 33333344567899999988888887767789999998765432 111 1122222333
Q ss_pred EecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 254 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+ . +...++-...+.|...|..+++
T Consensus 215 v~------~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 215 QY------Q-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EE------T-TEEEEEETTTTEEEEEETTTCC
T ss_pred EE------C-CEEEEecCCCCEEEEEECCCCC
Confidence 23 2 3334444446788888866654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.006 Score=62.51 Aligned_cols=141 Identities=11% Similarity=0.135 Sum_probs=90.7
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC-C----cEEEEeCCCCcee--EEeecCC
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G----MVCEIDPLTGSLL--GKFRAST 159 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g----~v~iwd~~~~~~~--~~~~~~~ 159 (630)
..|+++...+.|+.+|+.++...... ........++|+++|++|+.+... + .+..++ ..+... ..+.. .
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~ 225 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-G 225 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-C
T ss_pred CeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-C
Confidence 34666655577999999877654222 234568999999999976666542 1 233344 233221 23332 2
Q ss_pred CCeEEEEEcc-CCCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p-~~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.....++++| +|.++++-. +.|+.|+...+.....+. +.......++|+|+|++|+.+....+.|..++...
T Consensus 226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 3457789999 666555543 799999988765422222 12235678999999997777765678899988754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.053 Score=58.19 Aligned_cols=188 Identities=9% Similarity=-0.006 Sum_probs=107.6
Q ss_pred cEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCCCCeEE
Q 006808 87 SLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKGISC 164 (630)
Q Consensus 87 ~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 164 (630)
..|+.+. ..+.|..+++........+....-....++++.+.++.|+. -...+.|.+.++........+...-.....
T Consensus 52 ~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~ 131 (619)
T 3s94_A 52 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 131 (619)
T ss_dssp TEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCC
T ss_pred CEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCce
Confidence 3344444 45678888887653212222222356899999996665554 456789999998754332223233445688
Q ss_pred EEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcccccee
Q 006808 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC 239 (630)
Q Consensus 165 l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~ 239 (630)
|++.|.+..|..+. +.|...++.. .....+ ...-.....|++++++..|+.+-...+.|..+++....... .
T Consensus 132 Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~ 208 (619)
T 3s94_A 132 IALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--V 208 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----
T ss_pred EEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE--E
Confidence 99999755555544 4677777653 333333 23345678999999887777776667789999887654331 1
Q ss_pred ee-eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccc
Q 006808 240 VL-AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL 287 (630)
Q Consensus 240 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 287 (630)
.. .+.++ ..+..+ .+ ...++-...+.|...|..+++..
T Consensus 209 ~~~~~~~P---~gi~~~------~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 209 VKGSLPHP---FALTLF------ED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp -------C---CCEEES------SS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred EeCCCCCc---eEEEEe------CC-EEEEecCCCCEEEEEECCCCccc
Confidence 11 12222 222222 22 33334345678888888777543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.039 Score=56.83 Aligned_cols=151 Identities=11% Similarity=0.134 Sum_probs=84.5
Q ss_pred EeEECC-CCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEe-------ccccccc
Q 006808 10 LTSFSP-ALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-------LSVDRKK 80 (630)
Q Consensus 10 ~~~fs~-dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w-------~~~~~~~ 80 (630)
.++|+| ++..|. +....+.|++.|..++.....+..... .......++| .+.
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~---------------~~~~p~~ia~~~~~~~~d~~---- 203 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI---------------PTNRIRSIAFNKKIEGYADE---- 203 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS---------------SCSBEEEEEECCCBTTTBCT----
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc---------------ccCCCcEEEEeecccccCCC----
Confidence 458998 344444 444456789999887776544331110 0012334455 332
Q ss_pred ccccCCcEEEEEeCCC-------eEEEEEccC-Ceee-----EEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeC
Q 006808 81 KRKLGSSLLVLGTGGG-------DVLALAVSA-GQLK-----WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDP 146 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g-------~v~iwd~~~-~~~~-----~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~ 146 (630)
+..|+++...+ .|.+++... +... ..+. .. ....+++++|++.. +++-..++.|..+|+
T Consensus 204 -----G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 204 -----AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AY-KQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp -----TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EE-SCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred -----CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cC-CCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 55566666554 266665443 1221 1111 11 23457788995444 555567788999998
Q ss_pred C-------CCce-----------eEE-eec-CCCCeEEEEEccCCCEEEEeC---CeEEEEEC
Q 006808 147 L-------TGSL-----------LGK-FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNC 186 (630)
Q Consensus 147 ~-------~~~~-----------~~~-~~~-~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~ 186 (630)
. ++.. ... +.. .....+.++|+|+|++|..+. +.|+.++.
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 7 5543 112 222 223458999999999666554 78888654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.022 Score=56.12 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=75.8
Q ss_pred EEEEEeC---CCeEEEEEccCC--ee--eEEccCCCCCCEEEEEEecCCCEEEEEe-----------------CCCcEEE
Q 006808 88 LLVLGTG---GGDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAG-----------------ADGMVCE 143 (630)
Q Consensus 88 ~l~~~~~---~g~v~iwd~~~~--~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----------------~dg~v~i 143 (630)
.|+++.. +..|.+|++..+ .. +..+....-...+++.+.++|.+.++.. ..|.|..
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 3444433 345777776543 22 2223222224689999999998666653 1245555
Q ss_pred EeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCC-Cce--eeEeecCCCCeEEEEEee-CCcEEEE
Q 006808 144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLS 216 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~l~~ 216 (630)
+|. ++.. .+...-...+.++|+||++.|+++. +.|+.|++.. +.. .+.+. ..+..-.+++.+ +|.+.++
T Consensus 208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva 283 (355)
T 3sre_A 208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVG 283 (355)
T ss_dssp ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEE
Confidence 554 3322 2222233568999999999888776 7999999863 332 22332 345567788888 5876665
Q ss_pred Ee
Q 006808 217 SA 218 (630)
Q Consensus 217 ~~ 218 (630)
+.
T Consensus 284 ~~ 285 (355)
T 3sre_A 284 CH 285 (355)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.1 Score=51.95 Aligned_cols=194 Identities=11% Similarity=0.091 Sum_probs=119.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeecCC----C
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~----~ 160 (630)
...|+.-. ...+.|||+.+...+..+. ....|.--.|-.+. .|+-.+ +..|+-|++.. ..+.+.|.-|. .
T Consensus 77 ~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~ 151 (494)
T 1bpo_A 77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (494)
T ss_dssp SSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccc
Confidence 44455554 6779999999998876664 33466666775443 555553 45799999864 35666676553 3
Q ss_pred CeEEEEEccCCCEEEEeC---------CeEEEEECCCCceeeEeecCCCCeEEEEEee--CCcEEEEEeeC---CCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--NGKYVLSSAVG---ERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp--~~~~l~~~~~~---d~~i~v 226 (630)
.|..-..+++.++++..+ |.+.+|..+.+ ..+.+.||...-..+.+.. ....|++-+.. .+.++|
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 677778899999988654 68899998655 3456677765443333221 11123332222 268999
Q ss_pred EEcCCCc---c-cccee---eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 227 WRTDGVK---K-QSASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 227 wd~~~~~---~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
.++.... . ..... .+.-+....+.-.+-.+ +.-..+...+.-|.|++||+.++..+...
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-----~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-----ccCCEEEEEecCceEEEEecccceeeeee
Confidence 9985531 0 00000 11111223333333343 55677888899999999999999886544
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=71.66 Aligned_cols=143 Identities=8% Similarity=-0.081 Sum_probs=83.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceeEEe-ecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v 162 (630)
+.++++-...+.|.++++...... .+.........++++.|.+.+|+.+.. .+.|..+++.... ...+ ...-...
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~P 542 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP 542 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSC
T ss_pred CcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCc
Confidence 334444445677999988765443 332222245678899986666555442 2678887765332 2222 2222345
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeec---CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..|+|+|++..|+.+. +.|..+++.... ...+.. .......|++.. ..|+.+....+.|..++..+++
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCC
Confidence 7899999866666554 689999986432 233321 112334555544 3455555456788888877665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.096 Score=50.54 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=91.8
Q ss_pred CcEEEEEeCC----CeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCCceeEE
Q 006808 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~~~~~----g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~~~~~~ 154 (630)
+.+++.|+.+ ..+.+||+.++.....-. .........+.+ ++..++.|+.+ ..+.+||+.+.+-...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 5556666644 568999999876432111 111111222222 56667777655 4688999887642221
Q ss_pred --eecCCCCeEEEEEccCCCEEEEeC-----------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 155 --FRASTKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 155 --~~~~~~~v~~l~~~p~~~~l~~~~-----------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
+....... +++. -++++++.|+ ..+.+||+.+.+-.. .++........+. -+++.++.+|.
T Consensus 134 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~ 209 (306)
T 3ii7_A 134 PSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF--VKDKIFAVGGQ 209 (306)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred CCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE--ECCEEEEEeCC
Confidence 21111121 2222 3666777765 237899988765322 1111111112222 25666666653
Q ss_pred CC----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-----CcEEEEEcCCc
Q 006808 220 GE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (630)
Q Consensus 220 ~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 284 (630)
.. ..+.+||+.+.+-. .+..+........+..+ ++..++.|+.+ ..+.+||..+.
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWK---MVSPMPWKGVTVKCAAV-------GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEE---ECCCCSCCBSCCEEEEE-------TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCceEEEeeCCCCcEE---ECCCCCCCccceeEEEE-------CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 22 35889998876522 22122222212222222 45677777654 35777777654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.08 Score=51.01 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=91.4
Q ss_pred CcEEEEEeCCC-----eEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCceeEE
Q 006808 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~~~~~g-----~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~~~~~~~ 154 (630)
+.+++.|+.++ .+.+||+.+++......... ......+.+ ++..++.|+.++ .+.+||+.+.+-...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 55666666443 48899998876432211111 111222222 566777777553 578888876642221
Q ss_pred --eecCCCCeEEEEEccCCCEEEEeC---------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 155 --FRASTKGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 155 --~~~~~~~v~~l~~~p~~~~l~~~~---------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
+....... +++. -++++++.|+ ..+.+||+.+.+-.. .++........+ .-+++.++.+|...
T Consensus 140 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~ 215 (302)
T 2xn4_A 140 APMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDG 215 (302)
T ss_dssp CCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSS
T ss_pred CCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCC
Confidence 22111122 2222 2566777665 258899988765322 222111111222 23566666666321
Q ss_pred ----CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCCc
Q 006808 222 ----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (630)
Q Consensus 222 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~ 284 (630)
..+.+||+.+.+-. .+...........++. .++..++.|+.++ .+.+||..+.
T Consensus 216 ~~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 216 PLVRKSVEVYDPTTNAWR---QVADMNMCRRNAGVCA-------VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CcccceEEEEeCCCCCEe---eCCCCCCccccCeEEE-------ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 36889998876522 1212222211112222 2466667776543 4788887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.025 Score=56.21 Aligned_cols=146 Identities=12% Similarity=0.173 Sum_probs=92.9
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCceeEEeecC----CCCeEEEEEccCCCEEEEeC-CeEEEEECCCCc-----------
Q 006808 127 THGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK----------- 190 (630)
Q Consensus 127 ~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~----------- 190 (630)
.+|..++.+ .++.||.-++......+.++.. -..+..+..+|+|++||..+ ..|.|..+..+.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 355555555 3467777777655445555543 22678899999999999988 899999887331
Q ss_pred -eeeEeec------CCCCeEEEEEeeCC---cEEEEEeeCCCeEEEEEcCCCccccc-----eeeeeecCCceeeeeEEe
Q 006808 191 -KMQKFSG------HPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQSA-----SCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 191 -~~~~~~~------h~~~v~~l~~sp~~---~~l~~~~~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 255 (630)
..+.+.- ...+|..+.|+|-+ ..|++-. .|+.|++||+......+. ...+........+..++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 1123321 24679999999954 5677776 599999999987432211 011111222244567777
Q ss_pred cCCccCCCCCEEEEEe--cCCcEEEE
Q 006808 256 DNGGVDDAGLYVLAIS--ETGVCYIW 279 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s--~dg~i~iw 279 (630)
. +++-.|...+ ..|-|+-.
T Consensus 188 g-----~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 S-----KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp C-----TTSSCEEEEECTTSCEEEEE
T ss_pred c-----CCCcEEEEEecCCCCCEEEE
Confidence 7 6676666655 77877654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.2 Score=48.97 Aligned_cols=153 Identities=10% Similarity=0.156 Sum_probs=86.6
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCce
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK 191 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~ 191 (630)
++...+.++.+.+++.+++.+...+..+-+|- .+.+.+. ......+..+.+.|++..++++. |.+++.+...++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN 237 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCe
Confidence 45668999999998887766644433444442 2333321 22345788999999998887776 7877765333443
Q ss_pred eeEeec----CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCE
Q 006808 192 MQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLY 266 (630)
Q Consensus 192 ~~~~~~----h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 266 (630)
-..+.. +...+.++.+.+++..++++. ++.| ++....++.- ...... ..+..+.. +.+. ++ ..
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~--~g~i-~~S~DgG~tW--~~~~~~~~~~~~~~~-v~~~-----~~-~~ 305 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG--AGAL-LCSQDGGQTW--QQDVDVKKVPSNFYK-ILFF-----SP-DQ 305 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEEES--TTCE-EEESSTTSSC--EECGGGTTSSSCCCE-EEEE-----ET-TE
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEEeC--CCeE-EEeCCCCccc--EEcCccCCCCCCeEE-EEEE-----CC-Cc
Confidence 222221 223588899988777666543 6766 4455544321 111110 11223333 3332 23 45
Q ss_pred EEEEecCCcEEEEEc
Q 006808 267 VLAISETGVCYIWYG 281 (630)
Q Consensus 267 l~s~s~dg~i~iwd~ 281 (630)
+++++.+|.|.-++-
T Consensus 306 ~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 306 GFILGQKGILLRYVT 320 (327)
T ss_dssp EEEECSTTEEEEECC
T ss_pred eEEEcCCceEEEEcC
Confidence 667778898776653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.19 Score=53.90 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=92.9
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeEEeecCCCCeEEEE
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMA 166 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~ 166 (630)
+|+. +..+.|+..++.+......+....-..+.+++|++.+..|+.+ ..++.|..+++........+.........++
T Consensus 8 ~Ll~-s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLF-SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEE-EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEE-EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 4444 4667899999987654333332334578999999976665544 5678899999875544333433334567899
Q ss_pred EccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC-CCeEEEEEcCCCc
Q 006808 167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-ERYIALWRTDGVK 233 (630)
Q Consensus 167 ~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~-d~~i~vwd~~~~~ 233 (630)
+.+.+..|+.+. +.|.+.++........+...-.....|++.|...+|+.+... .+.|...++....
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 988666555554 789999986543222222334457899999966666665422 4577777776554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.074 Score=52.33 Aligned_cols=135 Identities=11% Similarity=0.126 Sum_probs=84.2
Q ss_pred CCCeEEEEEccCC--eee-EEccC----CCCCCEEEEEEec--CCC-EEEEEe-C--CCcEEEEeCCCC-c---eeEEee
Q 006808 94 GGGDVLALAVSAG--QLK-WRLSD----CHPGGVSAISFAT--HGS-CIYSAG-A--DGMVCEIDPLTG-S---LLGKFR 156 (630)
Q Consensus 94 ~~g~v~iwd~~~~--~~~-~~~~~----~h~~~v~~~~~s~--~g~-~l~s~~-~--dg~v~iwd~~~~-~---~~~~~~ 156 (630)
.+|.|.++|+.+. +.. ..+.. ........+.+.+ +|. +|+.+. . +.+|.+|++... . .+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999999742 221 12211 1234678888876 454 455553 2 457778776543 2 233343
Q ss_pred cCC-CCeEEEEEccCCCEEEEeC-------------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEE
Q 006808 157 AST-KGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 157 ~~~-~~v~~l~~~p~~~~l~~~~-------------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~ 216 (630)
+.. .....+.+.++|.++++.. |.|+.++. ++ +..+...-...+.++|+||+++|++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 322 3678999999999877753 34555554 33 2223223345689999999999888
Q ss_pred EeeCCCeEEEEEcCC
Q 006808 217 SAVGERYIALWRTDG 231 (630)
Q Consensus 217 ~~~~d~~i~vwd~~~ 231 (630)
+.+..+.|..|++..
T Consensus 238 adt~~~~I~~~~~~~ 252 (355)
T 3sre_A 238 AELLAHKIHVYEKHA 252 (355)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred EeCCCCeEEEEEECC
Confidence 877788999999874
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.072 Score=51.55 Aligned_cols=173 Identities=6% Similarity=0.007 Sum_probs=84.8
Q ss_pred CeEEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCceeE--EeecCCCCeEEEEE
Q 006808 96 GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLG--KFRASTKGISCMAV 167 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~l~~ 167 (630)
..+.+||+.++....... .........+.+ +++.++.|+.+ ..+.+||+.+.+-.. .+........++.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 358899998876432111 111111222222 56666666543 368889987654221 12211112222222
Q ss_pred ccCCCEEEEeC-------CeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcEEEEEeeCC----CeEEEEEcCCCcc
Q 006808 168 SSDGKMLATAA-------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK 234 (630)
Q Consensus 168 ~p~~~~l~~~~-------g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~~~~ 234 (630)
++.+++.|+ ..+.+||+.+.+-. ..++........+.+ +++.++.+|..+ ..+.+||+.+.+-
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 566777765 36899998876422 112211111222222 566666666321 4689999887652
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-----CcEEEEEcCCc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 284 (630)
. .+..+........++. -++..++.|+.+ ..+.+||..+.
T Consensus 244 ~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 244 T---FVAPMKHRRSALGITV-------HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp E---ECCCCSSCCBSCEEEE-------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred E---ECCCCCCCccceEEEE-------ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 1112222211112222 245666666643 34677776554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.096 Score=51.23 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=70.5
Q ss_pred CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec----CCCCeEEEEEccCCCEEEEeC-CeEEEEECCCC
Q 006808 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA-GQLKTFNCSDH 189 (630)
Q Consensus 115 ~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~ 189 (630)
.....+..+.+.+++..+ .++.+|.++..+...++....+.. ....+.++.+.|++.+++++. +.| ++....|
T Consensus 202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG 279 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG 279 (327)
T ss_dssp CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence 345678999999988654 555678877764333443333321 123588999999888888877 666 4555555
Q ss_pred ceeeEee---cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 190 KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 190 ~~~~~~~---~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
+.-..+. .+...+.++.|.+++.. ++++ .+|.|.-++-
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~~~-~~~G-~~G~i~~~~~ 320 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPDQG-FILG-QKGILLRYVT 320 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETTEE-EEEC-STTEEEEECC
T ss_pred cccEEcCccCCCCCCeEEEEEECCCce-EEEc-CCceEEEEcC
Confidence 5444443 23456788999876654 4555 4887766553
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.16 Score=49.20 Aligned_cols=142 Identities=9% Similarity=0.022 Sum_probs=71.5
Q ss_pred CcEEEEEeC-----C------CeEEEEEccCCeeeEEccCCCC-CCEEEEEEecCCCEEEEEeCC--------CcEEEEe
Q 006808 86 SSLLVLGTG-----G------GDVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGAD--------GMVCEID 145 (630)
Q Consensus 86 ~~~l~~~~~-----~------g~v~iwd~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~d--------g~v~iwd 145 (630)
+.+++.|+. . ..+.+||+.+++-...-..... .....+.+ ++..++.|+.+ ..+.+||
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEEC
Confidence 566677763 1 1277899988764311110010 11112222 55566666632 3588999
Q ss_pred CCCCcee--EEeecCCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCcee--eEeecCCCCeEEEEEeeCCcE
Q 006808 146 PLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKY 213 (630)
Q Consensus 146 ~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~--~~~~~h~~~v~~l~~sp~~~~ 213 (630)
+.+.+-. ..+...... .+++. .++++++.|+ +.+.+||+.+.+-. ..++........+ .-+++.
T Consensus 124 ~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i 199 (315)
T 4asc_A 124 RLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT--VHDGRI 199 (315)
T ss_dssp TTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEE
T ss_pred CCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE--EECCEE
Confidence 8876421 112111112 22222 3566767665 36899998876422 2222111111222 236677
Q ss_pred EEEEeeCCC----eEEEEEcCCCc
Q 006808 214 VLSSAVGER----YIALWRTDGVK 233 (630)
Q Consensus 214 l~~~~~~d~----~i~vwd~~~~~ 233 (630)
++.+|..+. .+.+||+.+.+
T Consensus 200 yv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 200 IVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEeccCCCCccceEEEEECCCCe
Confidence 777774322 58888888764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.032 Score=57.47 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=88.2
Q ss_pred EEEEeC-CCeEEEEEccCCeeeEEccCC--CCCCEEEEEE-------ecCCCEEEEEeCCC-------cEEEEeCCC-Cc
Q 006808 89 LVLGTG-GGDVLALAVSAGQLKWRLSDC--HPGGVSAISF-------ATHGSCIYSAGADG-------MVCEIDPLT-GS 150 (630)
Q Consensus 89 l~~~~~-~g~v~iwd~~~~~~~~~~~~~--h~~~v~~~~~-------s~~g~~l~s~~~dg-------~v~iwd~~~-~~ 150 (630)
|+++.. .+.|++.|+.++........+ .......++| +++|++|+.+...+ .|.+++... +.
T Consensus 154 Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~ 233 (496)
T 3kya_A 154 LYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGT 233 (496)
T ss_dssp EEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSC
T ss_pred EEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCc
Confidence 444444 466999999888775332221 1235899999 99999777765543 266676333 22
Q ss_pred ee-----EEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECC-------CCce-----------eeE-ee-cCCCCe
Q 006808 151 LL-----GKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-------DHKK-----------MQK-FS-GHPGAV 202 (630)
Q Consensus 151 ~~-----~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~-------~~~~-----------~~~-~~-~h~~~v 202 (630)
.. +.+... .....++++|++..|+++. +.|+.+|+. ++.. ... +. +.....
T Consensus 234 ~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p 312 (496)
T 3kya_A 234 FDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWE 312 (496)
T ss_dssp CSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCC
T ss_pred eeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCc
Confidence 21 222221 2345788999655555544 789999987 5543 112 21 223456
Q ss_pred EEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 203 RFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 203 ~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
..|+|+|+|++|+.+....+.|+.++...
T Consensus 313 ~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 313 FQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred eEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 89999999997777665678898876543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.34 Score=47.79 Aligned_cols=198 Identities=10% Similarity=0.135 Sum_probs=95.3
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++|.|+|+++++ ..+|.|++++ ++.. ..+.... + +.. + ......+++.+.-.. +..|
T Consensus 35 ~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~--v----~~~----g--~~~p~gia~~pdf~~------~g~l 92 (352)
T 2ism_A 35 ALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELS--V----YHR----G--ESGLLGLALHPRFPQ------EPYV 92 (352)
T ss_dssp EEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCEE
T ss_pred EEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecce--E----eec----C--CCCceeEEECCCCCC------CCEE
Confidence 5599999986555 5569999998 4442 1111110 0 000 0 112334555543111 2344
Q ss_pred EEEeCC------CeEEEEEccCCe-----eeEE-cc--CCCCCCEEEEEEecCCCEEEEEeC-------------CCcEE
Q 006808 90 VLGTGG------GDVLALAVSAGQ-----LKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------DGMVC 142 (630)
Q Consensus 90 ~~~~~~------g~v~iwd~~~~~-----~~~~-~~--~~h~~~v~~~~~s~~g~~l~s~~~-------------dg~v~ 142 (630)
+++... +.|..|+...+. .+.. +. .+.......++|.|+|.++++.+. .|.|.
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ 172 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKIL 172 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEE
Confidence 444432 567788876431 1212 22 111122368999999976655432 25666
Q ss_pred EEeCCCC------------ceeEEeecCCCCeEEEEEcc-CCCEEEEeC--CeE------EEEECCCCc-----------
Q 006808 143 EIDPLTG------------SLLGKFRASTKGISCMAVSS-DGKMLATAA--GQL------KTFNCSDHK----------- 190 (630)
Q Consensus 143 iwd~~~~------------~~~~~~~~~~~~v~~l~~~p-~~~~l~~~~--g~i------~lwd~~~~~----------- 190 (630)
.++.... .....+.........++|+| ++.++++-. +.+ .+.-+..+.
T Consensus 173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG 252 (352)
T ss_dssp EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence 6665420 01111111112356789999 566555433 231 122222221
Q ss_pred -------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 191 -------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 191 -------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
++..+. +......++| .+|..+++ ....+.|...++...
T Consensus 253 ~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~-~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 253 NDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVA-GLRGQALLRLVLEGE 298 (352)
T ss_dssp CCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEE-ETTTTEEEEEEEEEE
T ss_pred CCCCCcCCeEecC-CCCCCcceEE-ECCEEEEE-ECCCCEEEEEEECCC
Confidence 122222 2234567787 46655544 435667777776543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.83 E-value=0.44 Score=54.89 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=85.5
Q ss_pred CcEEEEEe----------CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-
Q 006808 86 SSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154 (630)
Q Consensus 86 ~~~l~~~~----------~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~- 154 (630)
..++++|+ ..|.|.+|++..++..........++|++++-- +| +|++| ...+|++|++...+.++.
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~ 920 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTE 920 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEE
Confidence 56888888 357799999976554322223456789888744 45 44444 357899999986654431
Q ss_pred eecCCCCeEEEEEccCCCEEEEeC--CeEEE--EECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 155 FRASTKGISCMAVSSDGKMLATAA--GQLKT--FNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~~~~l~~~~--g~i~l--wd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
..... .|..+.....+.++++|+ ..|.+ |+...++....- ..+..+++++.|-.++ .++.+. .+|.|.++..
T Consensus 921 ~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD-~~gNl~vl~~ 997 (1158)
T 3ei3_A 921 CNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAE-NAFNLFVCQK 997 (1158)
T ss_dssp EEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEE-TTSEEEEEEE
T ss_pred eeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEc-CCCcEEEEec
Confidence 11111 233333333577888888 44444 555554433222 2345678999987665 445554 6899999876
Q ss_pred CC
Q 006808 230 DG 231 (630)
Q Consensus 230 ~~ 231 (630)
..
T Consensus 998 ~~ 999 (1158)
T 3ei3_A 998 DS 999 (1158)
T ss_dssp CT
T ss_pred CC
Confidence 55
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.52 Score=45.59 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=65.1
Q ss_pred EEEEEccCCeeeEEcc-CCCCCCEEEEEEecCCCEEEEEeCC-------CcEEEEeCCCCceeEE--eecCCCCeEEEEE
Q 006808 98 VLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLLGK--FRASTKGISCMAV 167 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~~d-------g~v~iwd~~~~~~~~~--~~~~~~~v~~l~~ 167 (630)
+.+||+.+++....-. .........+.+ ++..++.|+.+ ..+.+||+.+.+-... +...... .+++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE
Confidence 7788988876532111 011111122222 56667777654 2578888876542221 1111111 12222
Q ss_pred ccCCCEEEEeC--------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCC----CeEEEEEcCCCc
Q 006808 168 SSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVK 233 (630)
Q Consensus 168 ~p~~~~l~~~~--------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~~~ 233 (630)
.++++++.|+ +.+.+||+.+.+-.. .++........+. -+++.++.+|..+ ..+.+||+.+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 4667777765 258999998765322 1211111112222 3566667766422 257788887764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.24 Score=47.48 Aligned_cols=141 Identities=12% Similarity=0.093 Sum_probs=73.2
Q ss_pred CcEEEEEeCC-----CeEEEEEccCCeeeE--EccCCCCCCEEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCceeE
Q 006808 86 SSLLVLGTGG-----GDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLG 153 (630)
Q Consensus 86 ~~~l~~~~~~-----g~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~d-----g~v~iwd~~~~~~~~ 153 (630)
+.+++.|+.+ ..+.+||+.+++... .... ......++.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-AREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-CCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-CcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 4556666543 358899998876432 2211 1111222222 66666777654 458899987764322
Q ss_pred E--eecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceeeE--eecCCCCeEEEEEeeCCcEEEEEeeCC-
Q 006808 154 K--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE- 221 (630)
Q Consensus 154 ~--~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~~~~~~d- 221 (630)
. +........++. -++++++.|+ ..+.+||+.+.+-... ++........+ .-+++.++.+|...
T Consensus 190 ~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 190 VTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGN 265 (301)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSS
T ss_pred CCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCC
Confidence 1 111111222222 2566777765 3689999987653221 22111111222 23666666666322
Q ss_pred ---CeEEEEEcCCCc
Q 006808 222 ---RYIALWRTDGVK 233 (630)
Q Consensus 222 ---~~i~vwd~~~~~ 233 (630)
..+.+||+.+.+
T Consensus 266 ~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 266 SLLSSIECYDPIIDS 280 (301)
T ss_dssp SBEEEEEEEETTTTE
T ss_pred cccccEEEEcCCCCe
Confidence 357888887754
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.015 Score=56.78 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=73.4
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEE-eCCC
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG-TGGG 96 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~-~~~g 96 (630)
.+++.++.||.|.-+|..+|+....+.... ........ +... +. ++..++.. +.+|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~---~~p~~~~~---~~~~---------~~--------~~~~~vv~p~~dG 67 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN---FQPLIEIQ---EPSR---------LE--------TYETLIIEPFGDG 67 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG---SCCSEECC---CSCT---------TT--------SSEEEEECCSTTT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc---cCCcEEec---CCcc---------cc--------CCcEEEEEECCCC
Confidence 478889999999999999999999886430 00000000 0000 00 02333333 6899
Q ss_pred eEEEEEccCCeeeEEccCC---CCCCEEE---EEE-----ecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 97 DVLALAVSAGQLKWRLSDC---HPGGVSA---ISF-----ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~---h~~~v~~---~~~-----s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
.|..++..+|.....+... ..+++.. ... ...+..+++|+.+|.+...|+.+|+.+..+...
T Consensus 68 ~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 68 NIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred EEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 9999999888654433211 2233332 000 014567899999999999999999999888743
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.82 Score=45.58 Aligned_cols=238 Identities=13% Similarity=0.155 Sum_probs=138.1
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
|+.+=+.-.+|..+.+|.=. ..++.|||+++...+..+.- ..++.--.|....
T Consensus 65 pi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-------------------~e~VvfWkWis~~------- 117 (494)
T 1bpo_A 65 PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISLN------- 117 (494)
T ss_dssp ECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-------------------SSCCCEEEEEETT-------
T ss_pred ccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-------------------CCCceEEEecCCC-------
Confidence 44444556788888888765 57899999999888776541 1234456676643
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCC----CCCEEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCceeE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~-------~dg~v~iwd~~~~~~~~ 153 (630)
.|+..+ +..|+-|++........++..| ...|..-..+++.++++..| -.|.+.+|..+.+ ..+
T Consensus 118 ---~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ 192 (494)
T 1bpo_A 118 ---TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ 192 (494)
T ss_dssp ---EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEE
T ss_pred ---eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccc
Confidence 344443 4569999997644333333333 24688888889999876544 2467888887644 345
Q ss_pred EeecCCCCeEEEEEccC---CCEEEEeC-----CeEEEEECCCC---ce------eeEe-ec--CCCCeEEEEEeeCCcE
Q 006808 154 KFRASTKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~---~~~l~~~~-----g~i~lwd~~~~---~~------~~~~-~~--h~~~v~~l~~sp~~~~ 213 (630)
.+.+|.+....+.+.-+ ...++.+. +.+++.++... .. +..+ +. ...-.-++..++....
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence 56766554433333211 12333332 68899988542 11 1111 11 1223456777877766
Q ss_pred EEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
++... .-|.|++||+.++... ....+.....++ .+.. ....=+++....|.|.--.+...+
T Consensus 273 iyviT-K~G~i~lyDleTgt~i---~~nrIs~~~iF~--t~~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 273 VFLIT-KYGYIHLYDLETGTCI---YMNRISGETIFV--TAPH-----EATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEE-TTSEEEEEETTTCCEE---EEEECCSSCEEE--EEEE-----TTTTEEEEEETTCEEEEEEECTTT
T ss_pred EEEEe-cCceEEEEecccceee---eeecccCCceEE--eccc-----CCCCcEEEEccCceEEEEEEcccc
Confidence 66666 6899999999998743 222222333332 2222 233445555677766655544433
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.77 Score=45.26 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=98.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..++|.|+|+++++ ..+|.|++++ .++. ..+.... + +.. + ......+++.+.-.. +..
T Consensus 32 ~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~--v----~~~----g--~~g~~gia~~pdf~~------~g~ 89 (354)
T 3a9g_A 32 WSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFD--V----ANV----G--EAGLLGLALHPEFPK------KSW 89 (354)
T ss_dssp EEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCE
T ss_pred eEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccc--e----eec----C--CCceeeEEeCCCCCc------CCE
Confidence 35599999985554 5569999987 3454 2222110 0 000 0 112334555443111 234
Q ss_pred EEEEeC----C----CeEEEEEccCC-------eeeEE-ccCCCCCCEEEEEEecCCCEEEEEeC-------------CC
Q 006808 89 LVLGTG----G----GDVLALAVSAG-------QLKWR-LSDCHPGGVSAISFATHGSCIYSAGA-------------DG 139 (630)
Q Consensus 89 l~~~~~----~----g~v~iwd~~~~-------~~~~~-~~~~h~~~v~~~~~s~~g~~l~s~~~-------------dg 139 (630)
|+++.. + ..|..|+...+ +.+.. +..+.......++|.|+|.++++.+. .|
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence 444443 2 45777776654 11111 21111112467999999986666432 24
Q ss_pred cEEEEeCCCCc--------eeEEe-ecCCCCeEEEEEcc-CCCEEEEeCC-----eEEEEECCC--------C-------
Q 006808 140 MVCEIDPLTGS--------LLGKF-RASTKGISCMAVSS-DGKMLATAAG-----QLKTFNCSD--------H------- 189 (630)
Q Consensus 140 ~v~iwd~~~~~--------~~~~~-~~~~~~v~~l~~~p-~~~~l~~~~g-----~i~lwd~~~--------~------- 189 (630)
.|..++.. ++ ....+ .++. ....++|+| +|.++++-.+ .|.+...-. +
T Consensus 170 ~I~ri~~d-G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 247 (354)
T 3a9g_A 170 KILRVDEE-GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF 247 (354)
T ss_dssp EEEEECTT-SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred EEEEEcCC-CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence 56666653 22 01112 2232 346899999 6766555432 344432111 0
Q ss_pred -ceeeEeecCCCCeEEEEEe-------eCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 190 -KKMQKFSGHPGAVRFMTFS-------DNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 190 -~~~~~~~~h~~~v~~l~~s-------p~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.++..+.........++|. .+|.++++. ...+.|...++...
T Consensus 248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~-~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIAC-LRGSMLAAVNFGDN 297 (354)
T ss_dssp CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEE-TTTTEEEEEEECGG
T ss_pred cCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEE-cCCCEEEEEEECCC
Confidence 1222221123456788884 456555544 35677888887653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.58 Score=46.08 Aligned_cols=21 Identities=10% Similarity=-0.119 Sum_probs=14.6
Q ss_pred CCCEEEEeeC-CCcEEEEECCC
Q 006808 16 ALDYFAICSG-DARIKIWDTLK 36 (630)
Q Consensus 16 dg~~las~s~-dg~i~vwd~~~ 36 (630)
++.+++.|+. ...+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 6677777764 45688888864
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.35 E-value=1.5 Score=50.65 Aligned_cols=176 Identities=11% Similarity=0.116 Sum_probs=100.9
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEe---cC-CCEEEEEe----------CCCcEEEEeCCCCceeEEee-cCCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFA---TH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKFR-ASTK 160 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s---~~-g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~-~~~~ 160 (630)
+.|++.|..+.+.+..+.-.....+.+++.. .+ ..+|+.|. ..|.|.+|++..++.....+ ...+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 4588999988887655544444556666543 22 35777775 34789999987543322211 2356
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE--cCCCccccce
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR--TDGVKKQSAS 238 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd--~~~~~~~~~~ 238 (630)
+|++++-- +|+++++.+..|++|++...+.++.-..+-..|..+.....+.+++++.. -+.+.++. ....+..
T Consensus 887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~-~~Sv~~~~y~~~~~~L~--- 961 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDL-MRSVLLLAYKPMEGNFE--- 961 (1158)
T ss_dssp CEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEES-SBCEEEEEEETTTTEEE---
T ss_pred cCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEh-hheEEEEEEEcCCCeEE---
Confidence 78887644 46666666689999999876544411111112333334345778888764 44455544 3333221
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
.+........+.++.+- +...++.+..+|.+.++....
T Consensus 962 -~~a~D~~~~~vta~~~l------d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 962 -EIARDFNPNWMSAVEIL------DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp -EEEECCSCBCEEEEEEE------ETTEEEEEETTSEEEEEEECT
T ss_pred -EEEeecccccEEEEEEE------ccCcEEEEcCCCcEEEEecCC
Confidence 22222233333344432 235788899999999987644
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.37 Score=46.23 Aligned_cols=142 Identities=12% Similarity=0.070 Sum_probs=72.8
Q ss_pred CcEEEEEeCCC-----eEEEEEccCCeeeEEccCCCC-CCEEEEEEecCCCEEEEEeCC-------CcEEEEeCCCCcee
Q 006808 86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHP-GGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLL 152 (630)
Q Consensus 86 ~~~l~~~~~~g-----~v~iwd~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~d-------g~v~iwd~~~~~~~ 152 (630)
+.+++.|+.++ .+.+||+.++.....-..... ....++.+ +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 55666666553 488899988765322111111 11122222 56666666542 35889998766422
Q ss_pred E--EeecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 153 G--KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 153 ~--~~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
. .+........++. -++++++.|+ +.+.+||+.+.+-.. .+........ + ..-+++.++.+|...
T Consensus 187 ~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~-~~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG-V-CAVNGLLYVVGGDDG 262 (302)
T ss_dssp EECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-E-EEETTEEEEECCBCS
T ss_pred ECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe-E-EEECCEEEEECCcCC
Confidence 2 1221111222222 2567777775 378999998765322 1211111111 2 223566667766322
Q ss_pred ----CeEEEEEcCCCc
Q 006808 222 ----RYIALWRTDGVK 233 (630)
Q Consensus 222 ----~~i~vwd~~~~~ 233 (630)
..+.+||+.+.+
T Consensus 263 ~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 263 SCNLASVEYYNPTTDK 278 (302)
T ss_dssp SSBCCCEEEEETTTTE
T ss_pred CcccccEEEEcCCCCe
Confidence 248888887764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=1.5 Score=46.84 Aligned_cols=143 Identities=4% Similarity=-0.056 Sum_probs=90.2
Q ss_pred EEEEE-eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeEEe-ecCCCCeEE
Q 006808 88 LLVLG-TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKF-RASTKGISC 164 (630)
Q Consensus 88 ~l~~~-~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~v~~ 164 (630)
.|+.+ ...+.|..+++...... .+....-..+.++++.+.++.| ++-+..+.|.+.++.... ...+ ...-.....
T Consensus 362 ~ly~sD~~~~~I~r~~~~g~~~~-~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~ 439 (619)
T 3s94_A 362 YIYWTDDEVRAIRRSFIDGSGSQ-FVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRA 439 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEE
T ss_pred eEEEEeCCCCeEEEEEcCCCccE-EEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeee
Confidence 34444 45677888888764332 2222223467789998755554 454567889999987543 3333 333346789
Q ss_pred EEEccCCCEEEEeC----CeEEEEECCCCceeeEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 165 l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
|++.|....|..+. +.|...++. |.....+ ...-...+.|++++++..|+.+-...+.|..+++....
T Consensus 440 iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 440 IVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred EEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 99999644444443 467777764 3323333 33345678999999887887776667789999986654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.21 Score=57.33 Aligned_cols=195 Identities=12% Similarity=0.099 Sum_probs=112.8
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeecC----CC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAS----TK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~----~~ 160 (630)
...|+.- ...++.|||+.+...+..+. ...+|.--.|-... .|+-.+ +..|.-|++.. ..+.+.|.-| ..
T Consensus 77 ~~iiALr-ag~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 77 SKVIALK-AGKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred cceEEEe-cCCeEEEeehHHhhhhcccc--cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccC
Confidence 3444444 36779999999887765553 33567777775443 444443 45699999963 3444445444 34
Q ss_pred CeEEEEEccCCCEEEEeC---------CeEEEEECCCCceeeEeecCCCCeEEEEEe--eCCcEEEEEee---CCCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~l~~~~~---~d~~i~v 226 (630)
.|..-..+++.++++..+ |.+.+|....+. .+.+.||.+.-..+... +....+++-+. ..+.++|
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 677778889999887654 788999886543 34455665443333221 11122222111 1358899
Q ss_pred EEcCCC-c--c-cccee--e-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 227 WRTDGV-K--K-QSASC--V-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 227 wd~~~~-~--~-~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
.++... . . ..... + +.-.....+.-.+-.+ +.-..+...+.-|.|++||+.||..+...+
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-----~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEec-----cccCEEEEEecCceEEEEecccchhhhhcc
Confidence 888553 1 0 00000 0 1111112222223333 555678888899999999999998876554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.34 Score=46.55 Aligned_cols=142 Identities=10% Similarity=0.032 Sum_probs=73.0
Q ss_pred CcEEEEEeCC------CeEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCEEEEEeC---------CCcEEEEeCCCC
Q 006808 86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTG 149 (630)
Q Consensus 86 ~~~l~~~~~~------g~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~---------dg~v~iwd~~~~ 149 (630)
+.+++.|+.+ ..+.+||+.++.-...-.... .....++.+ +++.++.|+. -..+.+||+.+.
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 5566666654 348999998876432211111 111122222 5666666653 345889998876
Q ss_pred ceeEE--eecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 150 SLLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 150 ~~~~~--~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
+-... +....... +++.. ++++++.|+ ..+.+||+.+.+- +..++........+.+ +++.++.+|
T Consensus 180 ~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG 255 (306)
T 3ii7_A 180 TWTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG 255 (306)
T ss_dssp EEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred eEEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence 42211 11111121 22222 566777765 3689999987642 2222211112222222 566666666
Q ss_pred eC----CCeEEEEEcCCCc
Q 006808 219 VG----ERYIALWRTDGVK 233 (630)
Q Consensus 219 ~~----d~~i~vwd~~~~~ 233 (630)
.. -..+.+||+.+.+
T Consensus 256 ~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 256 FQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BCSSSBCCEEEEEETTTTE
T ss_pred cCCCeeeeeEEEEcCCCCe
Confidence 31 1467888887764
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.98 E-value=1.2 Score=43.72 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=19.4
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEEC
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDT 34 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~ 34 (630)
..++|.|+|++|+.+...|.|++++.
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEET
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 35699999993444556799999985
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.82 Score=44.05 Aligned_cols=180 Identities=8% Similarity=0.080 Sum_probs=89.7
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----C-------CcEEEEeCCCCceeE--Ee
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-------GMVCEIDPLTGSLLG--KF 155 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----d-------g~v~iwd~~~~~~~~--~~ 155 (630)
++.|+ ..+.+||+.+++-...-...............++..++.|+. + ..+..||..+.+-.. .+
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44444 679999999987543221111122222233346777777773 1 127788887664211 11
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC----------CeEEEEECCCCce--eeEeecCCCCeEEEEEeeCCcEEEEEeeCC--
Q 006808 156 RASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-- 221 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~----------g~i~lwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d-- 221 (630)
....... +++.. ++.+++.|+ ..+.+||+.+.+- +..++..... ..+...+++.++.+|..+
T Consensus 86 p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 86 PSPRCLF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG--HTVLSHMDLVYVIGGKGSDR 161 (315)
T ss_dssp SSCEESC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEETTEEEEECCBCTTS
T ss_pred Ccchhce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc--eeEEEECCEEEEEeCCCCCC
Confidence 1111111 22222 566666655 2588999987642 2222211111 112224566666666312
Q ss_pred ---CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCCc
Q 006808 222 ---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (630)
Q Consensus 222 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~ 284 (630)
..+.+||+.+.+-. .+..+..+.....+.. -++..++.|+.++ .+.+||..+.
T Consensus 162 ~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWK---ELAPMQTARSLFGATV-------HDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred cccceEEEEeCCCCeEE---ECCCCCCchhceEEEE-------ECCEEEEEeccCCCCccceEEEEECCCC
Confidence 36889998876422 1212222221122222 2466777776644 4777887654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.54 Score=42.22 Aligned_cols=136 Identities=11% Similarity=0.026 Sum_probs=77.6
Q ss_pred CcEEEEEeCCCeEEEEEccCCee------eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeE------
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG------ 153 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~------~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~------ 153 (630)
..+|+....| +|+.=.+..+.. ..++-.+-=..+.+++|+|+|.+.+. .+|.+.-.+..+.....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4455666665 655544444431 11221111236779999998875444 77877777765532211
Q ss_pred Eeec-CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCcee------eEe-ecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 154 KFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM------QKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 154 ~~~~-~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~------~~~-~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
.+-. .-....++.|.|+|.+.++..|.|+-++..+...- ..+ .+-=..+..|.|.|+|...++. |+.++
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~ly 157 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFY 157 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEE
T ss_pred EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEE
Confidence 1110 00124789999999999996699988876432111 111 1111467899999999876554 55654
Q ss_pred EE
Q 006808 226 LW 227 (630)
Q Consensus 226 vw 227 (630)
-+
T Consensus 158 r~ 159 (236)
T 1tl2_A 158 KA 159 (236)
T ss_dssp EE
T ss_pred ec
Confidence 33
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.051 Score=52.98 Aligned_cols=196 Identities=11% Similarity=0.039 Sum_probs=103.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEE--eCCCcEEEEeCCCCceeEEeec----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSA--GADGMVCEIDPLTGSLLGKFRA---- 157 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~--~~dg~v~iwd~~~~~~~~~~~~---- 157 (630)
+.++++++.||.|.-+|..+|+..+++......++....-. +.+..++.+ +.||.+..++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 56799999999999999999999988864421233221110 112244444 5899999999988855444332
Q ss_pred CCCCeEE---EEE-c----cCCCEEEEeC--CeEEEEECCCCceeeEeecCC--CC-----eEEEEEe-----eCCcEEE
Q 006808 158 STKGISC---MAV-S----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--GA-----VRFMTFS-----DNGKYVL 215 (630)
Q Consensus 158 ~~~~v~~---l~~-~----p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~--~~-----v~~l~~s-----p~~~~l~ 215 (630)
...++.. ..+ . ..+..+++++ |.+...|+.+|+.+..+.... +. ..|.... -.+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1122221 000 0 0344566666 899999999999998885321 11 0111110 1123455
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCC-ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
.+. .+..+.+.+ ++++ . ........ ...+..-....-.++.++.+ +.++.||.|.-+|..+|..+-
T Consensus 170 ig~-~~y~v~~~~-~sG~-~---W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGK-TIFELGIHS-YDGA-S---YNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEE-EEEECEECC-TTSC-C---CCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred Eec-ceEEEEEEC-CCCC-e---EEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 554 355666655 3332 1 11111000 00000000000000134565 457889999999998887654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.49 Score=45.55 Aligned_cols=184 Identities=11% Similarity=-0.006 Sum_probs=90.6
Q ss_pred CcEEEEEeCC----CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----C-----CcEEEEeCCCCcee
Q 006808 86 SSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-----GMVCEIDPLTGSLL 152 (630)
Q Consensus 86 ~~~l~~~~~~----g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----d-----g~v~iwd~~~~~~~ 152 (630)
+.+++.|+.+ ..+.+||+.+++....-.......-.+++. .++..++.|+. + ..+.+||+.+.+-.
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 5566666642 358999998876532111001111112222 25666666665 2 36888998766422
Q ss_pred E--EeecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCceee--EeecCCCCeEEEEEeeCCcEEEEEeeC-
Q 006808 153 G--KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG- 220 (630)
Q Consensus 153 ~--~~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~~~~~~- 220 (630)
. .+.........+.+ ++++++.|+ ..+.+||+.+.+-.. .++........+.+ +++.++.+|..
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 179 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG 179 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence 1 12211122222222 667777765 368899988765321 12211111122222 56666666532
Q ss_pred ---CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC-----CcEEEEEcCCc
Q 006808 221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI 284 (630)
Q Consensus 221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 284 (630)
-..+.+||+.+.+-. .+..+........++.+ ++..++.|+.+ ..+.+||+.+.
T Consensus 180 ~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWR---MITAMNTIRSGAGVCVL-------HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp SCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEEE-------TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCcCceEEEEeCCCCeEe---eCCCCCCccccceEEEE-------CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 135888998776422 11112222111122222 45666666654 45788887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.8 Score=44.23 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=52.8
Q ss_pred CcEEEEEeCC-------CeEEEEEccCCeeeEEccCCC-CCCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCce
Q 006808 86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSL 151 (630)
Q Consensus 86 ~~~l~~~~~~-------g~v~iwd~~~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~ 151 (630)
+.+++.|+.+ ..+.+||+.+++-...-.... .....++. .+++.++.|+. -..+.+||+.+.+-
T Consensus 110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 5566666653 248889998876532211000 01111222 35666666653 23589999887642
Q ss_pred eEE--eecCCCCeEEEEEccCCCEEEEeC-------CeEEEEECCCCc
Q 006808 152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHK 190 (630)
Q Consensus 152 ~~~--~~~~~~~v~~l~~~p~~~~l~~~~-------g~i~lwd~~~~~ 190 (630)
... +...... .+++. -++++++.|+ ..+.+||+.+.+
T Consensus 188 ~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 188 KDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 211 1111112 22222 2567777765 367889988765
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.67 E-value=2.4 Score=43.73 Aligned_cols=250 Identities=10% Similarity=0.097 Sum_probs=132.8
Q ss_pred EEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccc--c--ccce----eeEEeccc-ccc---cccccCCc
Q 006808 20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH--L--SVDY----TCMKWLSV-DRK---KKRKLGSS 87 (630)
Q Consensus 20 las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~--~~~~----~~~~w~~~-~~~---~~~~~~~~ 87 (630)
|.+|+..|.|+|+-+-+++.+..+.- |++....|. . +..+ ..+.|-.. .+. ...+..++
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpV---------F~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGr 143 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGK 143 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECS---------SSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEEeec---------ccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeE
Confidence 66888899999999999999887652 222111110 0 0000 00112100 000 00011266
Q ss_pred EEEEEeC-CCeEEEEEccCCeeeEEccCCCCCCEEEEEEe--cCCCEEEEEeC-------CCcE---------EE---Ee
Q 006808 88 LLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGA-------DGMV---------CE---ID 145 (630)
Q Consensus 88 ~l~~~~~-~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~-------dg~v---------~i---wd 145 (630)
+|++-.. +..|-..++..-++-..+.......+.++.|- |+-.++++++. ||.. .+ .|
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 7777664 55688888887776544444567789999986 67778887763 3321 11 12
Q ss_pred CCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C----------------eEEEEECCC-------Cc-------eeeE
Q 006808 146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNCSD-------HK-------KMQK 194 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g----------------~i~lwd~~~-------~~-------~~~~ 194 (630)
..+.+....+.. .+....+...++|.+.++.+ + -+.++|+.. |+ -+..
T Consensus 224 ~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 224 AETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp TTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred CCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 222222111111 11223345566777766654 1 355555421 10 0111
Q ss_pred eec---------------CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc-------ccceeeeeecCCceeeee
Q 006808 195 FSG---------------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-------QSASCVLAMEHPAVFMDC 252 (630)
Q Consensus 195 ~~~---------------h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~ 252 (630)
+.+ -......+.++|||+++++++.-+.++.++++.+-.. ....++......+.-..-
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 211 1123356788999999999998888999999875321 001111111111222233
Q ss_pred EEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
..|. ++|....+.--|..|.-|++...
T Consensus 383 t~Fd-----~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 383 TTFD-----GRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEC-----SSSEEEEEETTTTEEEEEEHHHH
T ss_pred EEEC-----CCCceEeeeeecceEEEEeccHH
Confidence 4454 78855555567999999998653
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.33 Score=48.31 Aligned_cols=110 Identities=6% Similarity=-0.001 Sum_probs=71.9
Q ss_pred cCCCEEEEe-CCeEEEEECCCCceeeEeecC----CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc------
Q 006808 169 SDGKMLATA-AGQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA------ 237 (630)
Q Consensus 169 p~~~~l~~~-~g~i~lwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~------ 237 (630)
.+|.-++++ ++.||..++......+.+.-. -..|..+..+|+|.+|+..+ +..|.|..+..+.....
T Consensus 30 ~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN--DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC--SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec--CCeEEEEEecCccccCccccccc
Confidence 345444444 478888888755555555432 22688899999999999986 77899999884321100
Q ss_pred ---eeeeeec-----CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 238 ---SCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 238 ---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
...+.++ ....+..+.|++ ....+..|++-..|+.|++||+..
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHP---l~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHP---KSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECT---TBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccceeEEEcCCcccCCCCceeEEEecc---ccCCCCeEEEEecCCEEEEEEccc
Confidence 0122222 133455555554 124578999999999999999976
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.71 Score=53.16 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=112.8
Q ss_pred ccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
||.+=+.-.+|..+.+|.=. ..++.|||+.+...+..+.- ..++.-..|..+.
T Consensus 65 pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------------~e~VvfWkWis~~------- 117 (1630)
T 1xi4_A 65 PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWISLN------- 117 (1630)
T ss_pred cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------------CCCceEEEecCCC-------
Confidence 34333445677777777654 57889999887766654331 2234455676643
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeeeEEccCCC----CCCEEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCceeE
Q 006808 85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLG 153 (630)
Q Consensus 85 ~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~-------~dg~v~iwd~~~~~~~~ 153 (630)
.|+..+ +..|+-|++........++..| ...|..-..+++.++++..| -.|.+.+|....+ ..+
T Consensus 118 ---~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ 192 (1630)
T 1xi4_A 118 ---TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQ 192 (1630)
T ss_pred ---eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cch
Confidence 344433 4569999997544443444444 35688888888999876543 3478888887643 233
Q ss_pred EeecCCCCeEEEEEc--cC-CCEEEEeC-----CeEEEEECCCC---ce------eeEe-ec--CCCCeEEEEEeeCCcE
Q 006808 154 KFRASTKGISCMAVS--SD-GKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~--p~-~~~l~~~~-----g~i~lwd~~~~---~~------~~~~-~~--h~~~v~~l~~sp~~~~ 213 (630)
.+.+|.+....+.+. +. ...++.+. +.++|.++... .. +..+ +. ...-..++..++....
T Consensus 193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (1630)
T ss_pred hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence 455555433333321 11 22333222 58888887543 11 1111 10 0112335566665555
Q ss_pred EEEEeeCCCeEEEEEcCCCccc
Q 006808 214 VLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 214 l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
++..+ .-|.|.++|+.++...
T Consensus 273 iy~it-k~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 273 VFLIT-KYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEEEe-cCceEEEEecccchhh
Confidence 55555 5889999999998743
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.10 E-value=5 Score=44.04 Aligned_cols=178 Identities=13% Similarity=0.136 Sum_probs=103.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-----cCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~ 160 (630)
...|.+|+.+| +..||..+..... ........|.++.. .+| .|+.++.+ -+..+|..+++.. .+. ....
T Consensus 73 ~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~ 146 (758)
T 3ott_A 73 NTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNN 146 (758)
T ss_dssp TTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCS
T ss_pred CCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCC
Confidence 44677888765 7899998875432 11112335777754 344 57777666 5788998766543 231 1234
Q ss_pred CeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecC------CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.|.++...++|.+.+...+-+..|+..+++.. .+... ...|.++...+++..|..+. ++-+..++..+++.
T Consensus 147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt--~~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT--EGYLFQYFPSTGQI 223 (758)
T ss_dssp CEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE--EEEEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE--CCCCeEEcCCCCeE
Confidence 68888888888877765556788888766532 22111 12478888777766555554 23588888776542
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
. ....+ ....+..++.. ++|.+.+ |+. +-+.+++..+.
T Consensus 224 ~---~~~~l--~~~~i~~i~~d-----~~g~lWi-gT~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 224 K---QTEAF--HNNSIKSLALD-----GNGDLLA-GTD-NGLYVYHNDTT 261 (758)
T ss_dssp E---EEEEE--EEEEEEEEEEC-----TTCCEEE-EET-TEEEEECCTTS
T ss_pred E---eccCC--CCCeEEEEEEc-----CCCCEEE-EeC-CceeEEecCCC
Confidence 2 11111 12234444443 4555444 444 45777876554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.01 E-value=2.9 Score=40.79 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=23.7
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (630)
..++|.|||.++++--..|+|++++..++..
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 3559999999777765589999998665554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.70 E-value=2.1 Score=40.94 Aligned_cols=133 Identities=10% Similarity=0.126 Sum_probs=77.6
Q ss_pred CcEEEEEe--CC--CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEEeecCCC
Q 006808 86 SSLLVLGT--GG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 86 ~~~l~~~~--~~--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+..|+... .+ ..|...++...... .+.. +.. ..|+++|+.|+-.+. ...|...++..+.....+. +
T Consensus 115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~ 185 (302)
T 3s25_A 115 GNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C 185 (302)
T ss_dssp TTEEEEEEESSSSCEEEEEEETTSCCCE-EEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred CCEEEEEeecCCCCceEEEEECCCCCeE-EEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence 55666665 23 34666666543332 3332 222 456778888776554 6788888887665443333 2
Q ss_pred CeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee-CCCeEEEEEcCCCc
Q 006808 161 GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVK 233 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~-~d~~i~vwd~~~~~ 233 (630)
... ..+.|++.+|+-.. ..|..-++.... ...+.. ..+ ..|+|++.+|+.+.. ....|..-++....
T Consensus 186 ~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 186 NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 222 34669888888765 367777776544 333432 223 348888998887632 23567777776544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.61 E-value=2.8 Score=41.09 Aligned_cols=57 Identities=11% Similarity=0.148 Sum_probs=34.5
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCce------eeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKK------MQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~------~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
....++| .+|.++++.- +.|...++..... ...+......+..+++.|+|..+++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 4567777 4666555543 5777777654321 122222335788999999997666654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.53 E-value=3.4 Score=39.45 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=72.6
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----CCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCC
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG 171 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~ 171 (630)
+.|+..++..++.. .+.. .. +..|++++++|+-.. ....|...++... ....+..+.. ..|+|++
T Consensus 88 ~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g 156 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSD 156 (302)
T ss_dssp EEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEET
T ss_pred CeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEEC
Confidence 35777777766532 2221 12 236778888887665 3445666676533 3344443332 4567888
Q ss_pred CEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC-CeEEEEEcCCCc
Q 006808 172 KMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVK 233 (630)
Q Consensus 172 ~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d-~~i~vwd~~~~~ 233 (630)
+.|+..+ ..|+..++..+.....+. +... ..++|++.+|+-+...+ ..|..-++....
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 8887665 588999987665433333 2222 34669999988776333 256666666544
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.40 E-value=5.4 Score=41.16 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=50.9
Q ss_pred CeEEEEEccCCCEEEEeC---CeEEEEECCCCc------e-------eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeE
Q 006808 161 GISCMAVSSDGKMLATAA---GQLKTFNCSDHK------K-------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~------~-------~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i 224 (630)
....+.++|||+++++++ .++.++|+..-. . ..... -.......+|.++| ..+++-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceE
Confidence 446789999999999998 699999987421 1 11222 23346788999999 556666579999
Q ss_pred EEEEcCCC
Q 006808 225 ALWRTDGV 232 (630)
Q Consensus 225 ~vwd~~~~ 232 (630)
..|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99998653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.86 E-value=2.1 Score=41.99 Aligned_cols=135 Identities=14% Similarity=0.057 Sum_probs=61.9
Q ss_pred CeEEEEEccCCeeeE--EccCCCCCCEEEEEEecCCCEEEEEeC------CCcEEEEeC--CCCc--eeEEeecCCCCeE
Q 006808 96 GDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDP--LTGS--LLGKFRASTKGIS 163 (630)
Q Consensus 96 g~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~--~~~~--~~~~~~~~~~~v~ 163 (630)
..+.+||+.+..-.. .+....... .+++.. +++.++.|+. ...+.+||+ .+.+ .+..+........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCccc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 468999998876432 221111111 222222 5556666653 235777876 3322 1111111111112
Q ss_pred EEEEccCCCEEEEeC-C-----------------------eEEEEECCCCc--eeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 164 CMAVSSDGKMLATAA-G-----------------------QLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~-g-----------------------~i~lwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
+.+...++++++.|+ . .+.+||+.+.+ .+..++..... ..+...+++.++.+
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEe
Confidence 112233566777765 1 47789987654 33333322222 22233467777777
Q ss_pred eeCC-----CeEEEEEcCCCcc
Q 006808 218 AVGE-----RYIALWRTDGVKK 234 (630)
Q Consensus 218 ~~~d-----~~i~vwd~~~~~~ 234 (630)
|... ..+.++++++++.
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSC
T ss_pred eeCCCCCEeeeEEEEEEcCcEe
Confidence 7422 1355567777653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.59 E-value=7.2 Score=39.72 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=21.8
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV 39 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~ 39 (630)
..++|.|+|+++++-...+.|++++..++..
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 4569999999777654445788887655543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=2.8 Score=45.57 Aligned_cols=147 Identities=9% Similarity=0.103 Sum_probs=78.9
Q ss_pred CcEEEEEeCC----CeEEEEEccCCeeeEEc-c-----CCCCCCEEEEEEec-CCCEEEEEeCC------CcEEEEeCCC
Q 006808 86 SSLLVLGTGG----GDVLALAVSAGQLKWRL-S-----DCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLT 148 (630)
Q Consensus 86 ~~~l~~~~~~----g~v~iwd~~~~~~~~~~-~-----~~h~~~v~~~~~s~-~g~~l~s~~~d------g~v~iwd~~~ 148 (630)
+.+++.|+.+ ..+.+||+.++...... . ......-.+++..+ ++..++.||.+ ..+.+||+.+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 5566666643 35899999887653222 1 01111112333333 66677777643 2578889877
Q ss_pred Cce--eEEeecCCCCeEEEEEccCCCEEEEeC----CeEEEEECCCCceeeE-----eecCCCCeEEEEEeeC-CcEEEE
Q 006808 149 GSL--LGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQK-----FSGHPGAVRFMTFSDN-GKYVLS 216 (630)
Q Consensus 149 ~~~--~~~~~~~~~~v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~-----~~~h~~~v~~l~~sp~-~~~l~~ 216 (630)
.+- +..+...... .+++...++.+++.|+ +.+.+||+.+.+-... ++.......++.+..+ ++.++.
T Consensus 478 ~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 478 REWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 532 2112211112 2334434788888887 2799999987652211 1111122233555555 556666
Q ss_pred EeeC-C-----CeEEEEEcCCCc
Q 006808 217 SAVG-E-----RYIALWRTDGVK 233 (630)
Q Consensus 217 ~~~~-d-----~~i~vwd~~~~~ 233 (630)
+|.. + ..+.+||+.+..
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCcCCCCCeeeCcEEEEEccCCc
Confidence 6531 1 358899988876
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=6.8 Score=42.48 Aligned_cols=147 Identities=8% Similarity=0.025 Sum_probs=77.8
Q ss_pred CcEEEEEeCCC------eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEeec
Q 006808 86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 86 ~~~l~~~~~~g------~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~~~ 157 (630)
+.+++.|+.++ .+.+||+.++.....-.......-.+++...++..++.||.++ .+.+||..+.+- ..+..
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~ 530 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF-KDVTP 530 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE-EECCC
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce-EEccC
Confidence 55667766432 4889999887543211101111112233323778888887654 689999887542 22211
Q ss_pred ------CCCCeEEEEEccC-CCEEEEeC---------CeEEEEECCCCce-----eeEeec---CCCCeEEEEEeeCCcE
Q 006808 158 ------STKGISCMAVSSD-GKMLATAA---------GQLKTFNCSDHKK-----MQKFSG---HPGAVRFMTFSDNGKY 213 (630)
Q Consensus 158 ------~~~~v~~l~~~p~-~~~l~~~~---------g~i~lwd~~~~~~-----~~~~~~---h~~~v~~l~~sp~~~~ 213 (630)
......++.+..+ +++++.|+ +.+.+||+.+..- ...+.. ....-.+++...+++.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~i 610 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKL 610 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEE
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEE
Confidence 1222233555655 66777765 2588999887761 122211 1111112333343666
Q ss_pred EEEEeeC-------CCeEEEEEcCCCc
Q 006808 214 VLSSAVG-------ERYIALWRTDGVK 233 (630)
Q Consensus 214 l~~~~~~-------d~~i~vwd~~~~~ 233 (630)
++.+|.. ...+.+||+.+..
T Consensus 611 yv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 611 LIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEECCccCCCCCCCCCeEEEEECCCCe
Confidence 6666631 2358888887764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=7.3 Score=38.13 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=71.3
Q ss_pred EEEEeCCCeEEEEEccCCe-eeEEc--cCCCCCCEEEEEEecC---CCEEEEEeC----C----CcEEEEeCCCC--c--
Q 006808 89 LVLGTGGGDVLALAVSAGQ-LKWRL--SDCHPGGVSAISFATH---GSCIYSAGA----D----GMVCEIDPLTG--S-- 150 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~-~~~~~--~~~h~~~v~~~~~s~~---g~~l~s~~~----d----g~v~iwd~~~~--~-- 150 (630)
|+++...|.|++++. .+. .+..+ ..........|+|+|+ +..|+.+.. + ..|..|+.... .
T Consensus 42 l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~ 120 (354)
T 3a9g_A 42 YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK 120 (354)
T ss_dssp EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence 667777799999973 444 22221 1112356899999997 556655543 3 56778876543 1
Q ss_pred ---ee-EEeecC-CCCeEEEEEccCCCEEEEeC---------------CeEEEEECCCCce--------eeEe-ecCCCC
Q 006808 151 ---LL-GKFRAS-TKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHKK--------MQKF-SGHPGA 201 (630)
Q Consensus 151 ---~~-~~~~~~-~~~v~~l~~~p~~~~l~~~~---------------g~i~lwd~~~~~~--------~~~~-~~h~~~ 201 (630)
.+ ..+... ......|+|.|+|.++++.+ |.|.-++.. ++. ...+ .+|..
T Consensus 121 ~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf~~~~i~a~G~rn- 198 (354)
T 3a9g_A 121 EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPFPNSPIWSYGHRN- 198 (354)
T ss_dssp EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSSTTCCEEEECCSC-
T ss_pred ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCCCCCcEEEEccCC-
Confidence 11 112211 12346799999998777642 345555543 220 1112 23433
Q ss_pred eEEEEEee-CCcEEEEE
Q 006808 202 VRFMTFSD-NGKYVLSS 217 (630)
Q Consensus 202 v~~l~~sp-~~~~l~~~ 217 (630)
...++|+| ++..+++-
T Consensus 199 p~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 199 PQGIDWHRASGVMVATE 215 (354)
T ss_dssp CCEEEECTTTCCEEEEE
T ss_pred cceEEEeCCCCCEEEEe
Confidence 46899999 66655543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.95 E-value=7.4 Score=38.04 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=70.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee---EE---ccCCCCCCEEEEEEecC---CCEEEEEeC--------CCcEEEEeCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK---WR---LSDCHPGGVSAISFATH---GSCIYSAGA--------DGMVCEIDPLT 148 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~---~~---~~~~h~~~v~~~~~s~~---g~~l~s~~~--------dg~v~iwd~~~ 148 (630)
++.++++...|.|++++.. +... .. +..........++|+|+ +..|+.+.. ...|..|++..
T Consensus 29 G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~ 107 (353)
T 2g8s_A 29 NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD 107 (353)
T ss_dssp TCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred CCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence 5535667778999999853 3321 11 11112346799999996 555555432 23566676643
Q ss_pred C--c--eeEE-eec------CCCCeEEEEEccCCCEEEEeC---------------CeEEEEECCCCc------------
Q 006808 149 G--S--LLGK-FRA------STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK------------ 190 (630)
Q Consensus 149 ~--~--~~~~-~~~------~~~~v~~l~~~p~~~~l~~~~---------------g~i~lwd~~~~~------------ 190 (630)
. + .... +.. .......|+|.|+|.++++.+ |.|.-++....-
T Consensus 108 ~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~ 187 (353)
T 2g8s_A 108 DLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGV 187 (353)
T ss_dssp TSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTS
T ss_pred CCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCC
Confidence 2 1 1111 111 111235799999997666642 356666764320
Q ss_pred eeeEe-ecCCCCeEEEEEee-CCcEEEE
Q 006808 191 KMQKF-SGHPGAVRFMTFSD-NGKYVLS 216 (630)
Q Consensus 191 ~~~~~-~~h~~~v~~l~~sp-~~~~l~~ 216 (630)
....+ .+|. ....++|+| +|..+++
T Consensus 188 ~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 188 RAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CccEEEEcCc-CccceEEECCCCCEEEE
Confidence 11122 2333 357899999 5655544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=2.2 Score=38.27 Aligned_cols=137 Identities=9% Similarity=-0.001 Sum_probs=75.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCc------eeEEeec-CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCcee-----eEeec
Q 006808 130 SCIYSAGADGMVCEIDPLTGS------LLGKFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM-----QKFSG 197 (630)
Q Consensus 130 ~~l~s~~~dg~v~iwd~~~~~------~~~~~~~-~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~-----~~~~~ 197 (630)
..|+....| +++.=...++. ...++-. .-..+..++|+|+|.+.++.+|.++-.+..+.... .+.-+
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG 83 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIG 83 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEec
Confidence 456666666 55554444433 1122221 12367899999999988885588877776553211 11111
Q ss_pred CC--CCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce--eeeeecCCceeeeeEEecCCccCCCCCEEEEEecC
Q 006808 198 HP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (630)
Q Consensus 198 h~--~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 273 (630)
.. ..-.++.|.|+|.+.++ + |+.|+-++..+....... ........-..+..+.+. |+|.+.++. |
T Consensus 84 ~~Gw~~F~a~~fD~~G~LYav-~--dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-----p~G~Lyav~--d 153 (236)
T 1tl2_A 84 NGGWNQFQFLFFDPNGYLYAV-S--KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-----PNGYLYAVH--G 153 (236)
T ss_dssp CSCGGGCSEEEECTTSCEEEE-E--TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-----TTSCEEEEE--T
T ss_pred ccccccceEEEECCCCCEEEe-C--CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-----CCceEEEEe--C
Confidence 10 11478899999987666 3 688888876443322110 011111111234667776 888766665 7
Q ss_pred CcEE
Q 006808 274 GVCY 277 (630)
Q Consensus 274 g~i~ 277 (630)
|.++
T Consensus 154 g~ly 157 (236)
T 1tl2_A 154 QQFY 157 (236)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 7744
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=88.92 E-value=22 Score=36.12 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=51.8
Q ss_pred CcEEEEEeCC-CeEEEEEccCCee--eEEccCC-----CCCCEEEEEEecC---CCEEEEEeC-------------CCcE
Q 006808 86 SSLLVLGTGG-GDVLALAVSAGQL--KWRLSDC-----HPGGVSAISFATH---GSCIYSAGA-------------DGMV 141 (630)
Q Consensus 86 ~~~l~~~~~~-g~v~iwd~~~~~~--~~~~~~~-----h~~~v~~~~~s~~---g~~l~s~~~-------------dg~v 141 (630)
++ |+++... +.|++++..++.. +..+... ......+|+|+|+ +..|+.+.. ...|
T Consensus 38 G~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v 116 (454)
T 1cru_A 38 NQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTII 116 (454)
T ss_dssp SC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEE
T ss_pred Cc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEE
Confidence 44 4455555 4788888765543 2222211 2457889999996 556655442 2356
Q ss_pred EEEeCCCC--c-----eeE-Eeec-CCCCeEEEEEccCCCEEEEeC
Q 006808 142 CEIDPLTG--S-----LLG-KFRA-STKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 142 ~iwd~~~~--~-----~~~-~~~~-~~~~v~~l~~~p~~~~l~~~~ 178 (630)
..|++..+ + .+. .+.. .......|+|.|+|.++++.+
T Consensus 117 ~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 117 RRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 66665322 1 111 1221 123468999999998777643
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=86.49 E-value=41 Score=36.64 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=97.8
Q ss_pred CcEEEEEeCCCeEEEEEccC------Ceee--EEc--cCC-CCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSA------GQLK--WRL--SDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~------~~~~--~~~--~~~-h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~ 154 (630)
...|.+|+..+-|.++|..+ .... ..+ ..+ ....|.++...++|..-+.++..+-+..+|..+++....
T Consensus 429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL 508 (758)
T ss_dssp TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence 34577788777788888653 1111 011 111 123589999888887554334445588899877654432
Q ss_pred eec-C--CCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEee--c-CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 155 FRA-S--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--G-HPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 155 ~~~-~--~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~--~-h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
... . ...+.++....+|.+.+.+.+-+..|+..+++.. .+. + ....|.++... +|.. ..++ ..| |..++
T Consensus 509 ~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~gl~~~~i~~i~~~-~g~l-Wi~t-~~G-l~~~~ 583 (758)
T 3ott_A 509 FADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDESQQ-SISFGSFSNNEILSMTCV-KNSI-WVST-TNG-LWIID 583 (758)
T ss_dssp CTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CCCC-BCCCCC---CCEEEEEEE-TTEE-EEEE-SSC-EEEEE
T ss_pred cCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCceE-EecccCCCccceEEEEEC-CCCE-EEEC-CCC-eEEEc
Confidence 211 1 2367888888888877766656888887665432 221 1 12457777664 6654 4444 344 78888
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
..+.+.. .+.+.. ..+....... ++ ..|..|+.+|.+ .|+...
T Consensus 584 ~~~~~~~----~~~~~~-~~~~~~~~~~-----~~-G~l~fG~~~Gl~-~f~p~~ 626 (758)
T 3ott_A 584 RKTMDAR----QQNMTN-KRFTSLLFDP-----KE-DCVYLGGADGFG-ISHSNL 626 (758)
T ss_dssp TTTCCEE----EC--CC-CCCSEEEEET-----TT-TEEEEECBSEEE-EEEC--
T ss_pred CCCceeE----EecCCC-CceeeeEEEC-----CC-CcEEEecCCceE-EEChhh
Confidence 8775432 111111 1122222222 34 456677777754 456543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.82 E-value=27 Score=33.88 Aligned_cols=131 Identities=15% Similarity=0.223 Sum_probs=71.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee--EEc---cCCCCCCEEEEEEecC---CCEEEEE---eCCCcEEEEeCCCC-----
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK--WRL---SDCHPGGVSAISFATH---GSCIYSA---GADGMVCEIDPLTG----- 149 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~--~~~---~~~h~~~v~~~~~s~~---g~~l~s~---~~dg~v~iwd~~~~----- 149 (630)
+.++++--..|.|++++...+... ..+ ..........|+|+|+ +..|+.. ..+..|.-|.+..+
T Consensus 43 G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~ 122 (347)
T 3das_A 43 GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGE 122 (347)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTC
T ss_pred CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccc
Confidence 554444434899999987665432 111 1123457899999995 4455543 24556777765542
Q ss_pred -----cee-EEeec-CCCCeEEEEEccCCCEEEEeC---------------CeEEEEECCCCc-------eeeEe-ecCC
Q 006808 150 -----SLL-GKFRA-STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK-------KMQKF-SGHP 199 (630)
Q Consensus 150 -----~~~-~~~~~-~~~~v~~l~~~p~~~~l~~~~---------------g~i~lwd~~~~~-------~~~~~-~~h~ 199 (630)
+.+ ..+.. .......|.|.|+|.++++.+ |.|.-++....- ....+ .+|.
T Consensus 123 ~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R 202 (347)
T 3das_A 123 QLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR 202 (347)
T ss_dssp CBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS
T ss_pred cCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC
Confidence 111 11221 112346799999998777642 344444543210 01122 2444
Q ss_pred CCeEEEEEeeCCcEEEEE
Q 006808 200 GAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 200 ~~v~~l~~sp~~~~l~~~ 217 (630)
. ...++|+|+|..+++-
T Consensus 203 N-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 203 N-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp B-CCEEEECTTCCEEEEE
T ss_pred C-cceEEECCCCCEEEEe
Confidence 3 4688999988766553
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.48 E-value=53 Score=36.93 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=33.6
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 47788888888899999999999999999999988754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 630 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-05 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 7e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.003 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 3e-05 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 3e-05 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 4e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 9e-14
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 3/128 (2%)
Query: 102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161
+S S G G + S D + D TG L
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
+ + S GK + + A L+ ++ + + M+ + H V + F YV++ +
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS- 308
Query: 220 GERYIALW 227
++ + +W
Sbjct: 309 VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.7 bits (161), Expect = 2e-12
Identities = 24/168 (14%), Positives = 43/168 (25%), Gaps = 8/168 (4%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
+ A CS D +++W + + E + + +S
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209
Query: 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
S GS + VS G L H V + F + G
Sbjct: 210 TKKSGKPGPFLLSGSR-------DKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKF 261
Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG 179
I S D + D + A ++ + + T +
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.5 bits (158), Expect = 4e-12
Identities = 44/315 (13%), Positives = 85/315 (26%), Gaps = 53/315 (16%)
Query: 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
S + + F P S DA IK+WD G + + + + +
Sbjct: 17 RSPVTRV--IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74
Query: 63 HLSVDYTCMKWLSVDRKKKRKL---------------GSSLLVLGTGGGDVLALAVSAGQ 107
+K + + +V + + V G
Sbjct: 75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134
Query: 108 LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167
H V + G+ I S D V T + R + C++
Sbjct: 135 CVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193
Query: 168 SSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHPGAVRFM 205
+ + + + +K ++ S + GH VR +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253
Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAG 264
F GK++LS A ++ + +W ++ C+ + H
Sbjct: 254 LFHSGGKFILSCA-DDKTLRVWDY-----KNKRCMKTLNAHEHFVTSLDFHKTAP----- 302
Query: 265 LYVLAISETGVCYIW 279
YV+ S +W
Sbjct: 303 -YVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 37/296 (12%), Positives = 79/296 (26%), Gaps = 60/296 (20%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC----------- 164
H V+ + F S + SA D + D TG + T +
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 165 -------------------------------MAVSSDGKMLATAA--GQLKTFNCSDHKK 191
+++ +G + +A+ +K +
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135
Query: 192 MQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQ--------SASCVLA 242
++ F+GH VR + + +G + S S + + T K +
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195
Query: 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302
+ + + G ++L+ S +W L
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255
Query: 303 NSKSQKSATAA------IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGED 352
+S + + A ++ K + +K + H L + +V D
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.7 bits (91), Expect = 8e-04
Identities = 12/161 (7%), Positives = 45/161 (27%), Gaps = 13/161 (8%)
Query: 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211
++ + ++ +A+ +K ++ + GH +V+ ++F +
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS- 70
Query: 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271
+ + + + + + + + G ++++ S
Sbjct: 71 ----------GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312
+W Q ++ + N A+
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.1 bits (144), Expect = 2e-10
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 28/170 (16%)
Query: 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77
F + DA K+WD +G + F H S D + + +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTF-----------------TGHES-DINAICF-FPN 237
Query: 78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137
G++ L + +L D G++++SF+ G + +
Sbjct: 238 -------GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290
Query: 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFN 185
D D L G +SC+ V+ DG +AT + LK +N
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 28/175 (16%), Positives = 46/175 (26%), Gaps = 17/175 (9%)
Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
H G V ++S A S D D G F I+ +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 170 DGKMLATAAG----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225
+G AT + +L + ++FS +G+ +L+ +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCN 295
Query: 226 LWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
+W A + H D+G V S IW
Sbjct: 296 VWDA-----LKADRAGVLAGHDNRVSCLGVTDDGM------AVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174
H + A+ + T + SA DG + D T + + + + A + G +
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 23/135 (17%)
Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
K ++ + Q F+GH + + F NG + + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT---------CRLFDLRAD 258
Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-------- 292
+ + I + +G +LA + C +W +
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 293 ------TKILSSSED 301
+ + S D
Sbjct: 319 GVTDDGMAVATGSWD 333
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 0.001
Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 28/140 (20%)
Query: 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
S+I I F P + FA S DA +++D Q + +
Sbjct: 226 ESDINAI--CFFPNGNAFATGSDDATCRLFDLRADQELMTY----------------SHD 267
Query: 63 HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA 122
++ T + + R LL+ G + L+ H VS
Sbjct: 268 NIICGITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSC 317
Query: 123 ISFATHGSCIYSAGADGMVC 142
+ G + + D +
Sbjct: 318 LGVTDDGMAVATGSWDSFLK 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 1e-09
Identities = 44/307 (14%), Positives = 89/307 (28%), Gaps = 24/307 (7%)
Query: 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
++T + S D +K+W + G+ +S + + +
Sbjct: 18 HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 77
Query: 68 YTCMKWLSVDRKKKRKLGSSLLVL--------GTGGGDVLALAVSAGQLKWRLSDCHPGG 119
+ G + V G L V + L
Sbjct: 78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137
Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178
+ G + S D MV DP T + L + T ++ DG + + +
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSL 195
Query: 179 -GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237
++ ++ + +GH M DN +L S + + +W +
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIK-TGQCLQ 251
Query: 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297
+ +H + + N +V+ S+ G +W + E +RN +
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN--------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303
Query: 298 SSEDVNS 304
S V
Sbjct: 304 SGGVVWR 310
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 50/237 (21%)
Query: 110 WRLSDC--------HPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160
WR + H V + + F G+ I S D + +TG L T
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM--------------- 205
G+ + + + + LK +N + + GH VR M
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 206 -------------TFSDNGKYVLSSAVGERYIALWRTDGVKK----QSASCVLAMEHPAV 248
+ V R + D + K ++ +C+ ++
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178
Query: 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305
+ D G++V++ S +W + + + L+S ++
Sbjct: 179 RVYSLQFD-------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 50.0 bits (118), Expect = 7e-07
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 9/119 (7%)
Query: 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155
G +LA A + W + P ++ T G+ ++ ADG + TG L +
Sbjct: 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLT--TAGNVVFQGTADGRLVAYHAATGEKLWEA 514
Query: 156 RASTKGISC-MAVSSDGK-MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK 212
T ++ DG+ ++ A G + + + G TF GK
Sbjct: 515 PTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYG-----LAARATERQGPGTVYTFVVGGK 568
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (116), Expect = 8e-07
Identities = 28/210 (13%), Positives = 47/210 (22%), Gaps = 17/210 (8%)
Query: 7 RDILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLS 65
D + + +I T + D + +
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQKAGRLVWPT 213
Query: 66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF 125
+ K L A W+ H
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAE-------RADGWRPGGWQQVAYHRALDRIYLL 266
Query: 126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQL 181
A V +D TG L KF I + VS D K L A L
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTL 325
Query: 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211
+ ++++ + + +T +D G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 0.001
Identities = 18/257 (7%), Positives = 55/257 (21%), Gaps = 52/257 (20%)
Query: 24 SGDARIKIWDTLKGQVQTEFADIASTETT----------SLYGNRLEREHLSVDYTCMKW 73
++++D + + + + G L S
Sbjct: 75 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134
Query: 74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-------------- 119
+ KR L +++ G
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194
Query: 120 --VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----------------------F 155
++ +++ + G + +ID +G
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254
Query: 156 RASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY 213
+ + + +++ KF + + S + K
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKP 313
Query: 214 VL-SSAVGERYIALWRT 229
+L + + G++ + +
Sbjct: 314 LLYALSTGDKTLYIHDA 330
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.1 bits (115), Expect = 9e-07
Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSS 217
ISC A + D +A ++ + S +K ++ + H G V + ++ + +++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
+R +W G + +L + A +
Sbjct: 70 G-TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 13/165 (7%), Positives = 39/165 (23%), Gaps = 11/165 (6%)
Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATA 177
+S ++ + I + V + + + + ++ + + D + T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 178 A--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234
+ K + + G R I++ +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
+ + + + + A S C I+
Sbjct: 130 WW------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 34/270 (12%), Positives = 79/270 (29%), Gaps = 5/270 (1%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
FS +Y A + +++ G + +D ++ N + +
Sbjct: 69 KFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127
Query: 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
+ S D K L+ + + + G + S + + +
Sbjct: 128 CF-SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186
Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK 191
+ C + + S +A S + + + +
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246
Query: 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD 251
+ +GH +V + F+ +G+ V+S + +R + LW +S S V
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 252 CR--CIDNGGVDDAGLYVLAISETGVCYIW 279
+ + Y+L+ S+ W
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.2 bits (100), Expect = 6e-05
Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 23/220 (10%)
Query: 152 LGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG------------- 197
L K T + C+ S+DG+ LAT + + SD + + S
Sbjct: 55 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114
Query: 198 -----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252
+R + FS +GK++ + A + + +
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174
Query: 253 RCIDNGGVDDAGLYVLAISETGVCYIWY---GQNIEELRNTKATKILSSSEDVNSKSQKS 309
G D + + + G + I + S D + S
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234
Query: 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS 349
T + +L + + H Y ++ Q ++ S
Sbjct: 235 ETGFLV-ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
H V ++ FA G S G D ++ G+ + + + + + +S
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISV 316
Query: 170 DGKMLATAAG 179
D K + T +G
Sbjct: 317 DDKYIVTGSG 326
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 3e-06
Identities = 10/111 (9%), Positives = 25/111 (22%), Gaps = 10/111 (9%)
Query: 116 HPGGVSAISFATHGSC---IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
G A SF D ++ P + + + + +S+ +
Sbjct: 6 AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTR 64
Query: 173 MLATAAG------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
+ T + +R +G ++
Sbjct: 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 10/115 (8%), Positives = 35/115 (30%), Gaps = 5/115 (4%)
Query: 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174
+ ++ + G + E+ + + + + + GK
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280
Query: 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227
+ L + + + +V S + KY+++ + G++ ++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGS-GDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 166 AVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY 223
V++DG+M + ++ + H V +T S+ ++V + G+
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG--GKGC 73
Query: 224 IALWR-TDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258
+ +W + K S + + C+ + +G
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.3 bits (108), Expect = 5e-06
Identities = 27/228 (11%), Positives = 61/228 (26%), Gaps = 7/228 (3%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSV--DYT 69
+ SP AI R+++ + D + + + L+ D +
Sbjct: 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147
Query: 70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFAT 127
+ L D +L+ L +
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207
Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186
+ +D TG + + R AV+ A L++F+
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL 267
Query: 187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234
+ +++ P + + S +G V +A + + ++K
Sbjct: 268 EKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEK 313
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (89), Expect = 0.001
Identities = 16/159 (10%), Positives = 36/159 (22%), Gaps = 10/159 (6%)
Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGIS--CMAVSSDGKMLATAAGQ--------L 181
I + + ID ++ + G + V+ G++ + L
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241
T + ++ S +GK + R + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280
+ F R I G + +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.9 bits (86), Expect = 0.003
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166
P +++ +T GS ++ GA G + D T G+ +A
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 48/373 (12%), Positives = 102/373 (27%), Gaps = 29/373 (7%)
Query: 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
V G + + + ++ + V + G + G D + ID
Sbjct: 34 FSVTLRDAGQIALVDGDSKKIVKVID--TGYAVHISRMSASGRYLLVIGRDARIDMIDLW 91
Query: 148 TGSL-----LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP 199
+ + S + + A Q + + Q S
Sbjct: 92 AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151
Query: 200 GAVRFMTFSDNGKY---VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256
V T+ + + S E + + T V + + + ++ D
Sbjct: 152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD 211
Query: 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK----SATA 312
G ++ A + + + ++ K N K +T+
Sbjct: 212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271
Query: 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372
+ + I H A+ + + Q + + S V +
Sbjct: 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT-HPKSSHLYVDTTFNPD--- 327
Query: 373 SKRGRYVQNRVTALDRAN--AEDAVLPLPKILDSYDKKNR--HQNLSSDLDEVMTDVVDS 428
+ V D N A+ VLP+ + D + R + DEV V +
Sbjct: 328 ----ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383
Query: 429 ESQAKFMEIKDDK 441
++ + + + DDK
Sbjct: 384 KNDSSALVVVDDK 396
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 2e-05
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
I+C + + + T A ++ ++ + K + + SGH G V + ++ G V S
Sbjct: 16 ITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73
Query: 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
+ + + +
Sbjct: 74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.003
Identities = 6/68 (8%), Positives = 18/68 (26%), Gaps = 2/68 (2%)
Query: 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAV 219
+ +L + + Q +N K + + + F
Sbjct: 285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD 344
Query: 220 GERYIALW 227
G+ ++ +
Sbjct: 345 GQSFLEIL 352
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 2e-05
Identities = 12/110 (10%), Positives = 25/110 (22%), Gaps = 2/110 (1%)
Query: 150 SLLGKFRASTKG-ISCMAVSSDGKMLATAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTF 207
+L + +G + + G + G + T + ++ H
Sbjct: 7 ALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKT 66
Query: 208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDN 257
S +G Y S V T + +
Sbjct: 67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 17/228 (7%), Positives = 44/228 (19%), Gaps = 12/228 (5%)
Query: 13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM- 71
SP + + + E A + +
Sbjct: 96 ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155
Query: 72 -KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------VSAIS 124
+ + + +
Sbjct: 156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215
Query: 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAAGQLK 182
F +A +D TG + A + + + D + +L
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275
Query: 183 TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
++ K ++ + + F G + +A++ D
Sbjct: 276 KYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 20/239 (8%), Positives = 53/239 (22%), Gaps = 46/239 (19%)
Query: 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
+ +Y + + + + D V + ++ D
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM--------MAPD---- 50
Query: 72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFA 126
+ VL GD+ + + + + + + + + +
Sbjct: 51 -------------NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97
Query: 127 THGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGK 172
G +Y+ + G R + + M + DG
Sbjct: 98 PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157
Query: 173 MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231
+ A + + K R + + Y ++ T
Sbjct: 158 LY-VAGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.6 bits (88), Expect = 0.002
Identities = 14/160 (8%), Positives = 35/160 (21%), Gaps = 29/160 (18%)
Query: 8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
+ F A D G+ T + + +
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT----------------QEFADLTELY 254
Query: 68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT 127
+T ++ + + + +L + ++F
Sbjct: 255 FTGLRS-----------PKDPNQIYGVLNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDK 301
Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167
G +Y G + +P T + + +S
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 2e-05
Identities = 13/165 (7%), Positives = 30/165 (18%), Gaps = 18/165 (10%)
Query: 15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74
S + D + E ++ L L
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEV------------VSKPFVIPLIPGSPNPTKL 235
Query: 75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS 134
+ + S +
Sbjct: 236 VPR--SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293
Query: 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG 179
A G++ + D T + ++ + +S+D K +
Sbjct: 294 APEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKD 334
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.7 bits (88), Expect = 0.002
Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 14/132 (10%)
Query: 109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG-------MVCEIDPLTGSLLGKFRASTKG 161
K + PG + + D +DP ++ +S
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278
Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
S A G L ++ +K + + + S + K V+
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRK- 333
Query: 220 GERYIALWRTDG 231
+ I + +
Sbjct: 334 DDGKIYTFPLEK 345
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151
G + A+ +G++ W + P ++ T G+ +++ DG D +G
Sbjct: 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLA--TAGNLVFTGTGDGYFKAFDAKSGKE 519
Query: 152 LGKFRASTKGIS-CMAVSSDGK-MLATAAG 179
L KF+ + +S + DG+ L G
Sbjct: 520 LWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 3e-05
Identities = 40/366 (10%), Positives = 98/366 (26%), Gaps = 68/366 (18%)
Query: 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
++I + S + CSGD +K+WD + ++ S + ++
Sbjct: 14 DADIFSV--SACN--SFTVSCSGDGYLKVWDNKLLDNENPK-----DKSYSHFVHKSGLH 64
Query: 63 HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL---------S 113
H+ V ++ + + L+ + GD+L ++ ++ S
Sbjct: 65 HVDV-LQAIERDAFELC--------LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS 115
Query: 114 DCHPGGVSAISFATHGSC-----IYSAGADGMV------------------CEIDPLTGS 150
D A+ + + + G
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175
Query: 151 LLGKFRASTKGISCMAVSSDGKMLATAAG--------QLKTFNCSDHKKMQKFSGHPGAV 202
+ ++ + + +S G ++AT + + + ++
Sbjct: 176 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234
Query: 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262
R + FS G + + + + + + + H + + V
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294
Query: 263 A-----GLYVLAISETGVCYIW---YGQNIEELR-NTKATKILSSSEDVNSKSQKSATAA 313
G + + G W + I L + +I V+ A
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Query: 314 IFAAKL 319
+F K
Sbjct: 355 VFDVKF 360
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 44.5 bits (104), Expect = 3e-05
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153
G + A ++ G+ KW + + T G ++ A DG + +D G L
Sbjct: 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY--TKGGLVWYATLDGYLKALDNKDGKELW 499
Query: 154 KFRASTKGISC-MAVSSDGK-MLATAAG 179
F+ + GI M S GK + + G
Sbjct: 500 NFKMPSGGIGSPMTYSFKGKQYIGSMYG 527
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 44.6 bits (104), Expect = 3e-05
Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 5/123 (4%)
Query: 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151
G +LA + W++ +P + + +T G+ ++ A G + G
Sbjct: 434 AVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491
Query: 152 LGKFRASTKGIS-CMAVSSDGK-MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD 209
L +F A + ++ M G+ +A AG + + G R + F+
Sbjct: 492 LWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGG-ESMNLPGMKNRSRLLVFAL 550
Query: 210 NGK 212
+GK
Sbjct: 551 DGK 553
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 44.2 bits (103), Expect = 4e-05
Identities = 37/219 (16%), Positives = 60/219 (27%), Gaps = 29/219 (13%)
Query: 22 ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81
IC + E + + + + Y ++
Sbjct: 385 ICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFM------LPYKAGQFFVGATLNM 438
Query: 82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141
G G + A G KW + ++ T G ++ DG +
Sbjct: 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMA--TAGDLVFYGTLDGYL 496
Query: 142 CEIDPLTGSLLGKFRASTKGISC-MAVSSDGK-MLATAAG----------------QLKT 183
D TG LL KF+ + I M + G +A G
Sbjct: 497 KARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGL 556
Query: 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS-AVGE 221
KK+ ++ G V + FS +GK VGE
Sbjct: 557 GAVGAFKKLANYTQMGGGV--VVFSLDGKGPYDDPNVGE 593
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 5e-05
Identities = 13/173 (7%), Positives = 37/173 (21%), Gaps = 3/173 (1%)
Query: 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGISCMAV 167
++ +S I S + DG + + S + C
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 168 SSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227
+ + D F + KY + + L
Sbjct: 65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124
Query: 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280
+ + + + ++ ++ ++ + V +
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 2e-04
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
V++I F+ +Y+AG+DG++ + T + F S + ++ +L
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIACSDNILC 308
Query: 176 TAAG--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210
A KT D Q + ++ + +N
Sbjct: 309 LATSDDTFKTNAAID----QTIELNASSIYIIFDYEN 341
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 34/290 (11%), Positives = 72/290 (24%), Gaps = 22/290 (7%)
Query: 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
S + + D IKIWD + + + Y R+
Sbjct: 12 SETSKGV-YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70
Query: 63 HLSVDYTCMKWLSVDRKKKRKL-------------GSSLLVLGTGGGDVLALAVSAGQLK 109
S + ++ + G + V +A
Sbjct: 71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130
Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
R+ H V+ + F S D + + T + +GI+C+
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSAS--GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188
Query: 170 DGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229
+ ++ ++ ++ ++ GH + + S + I +W
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELVRCIRFDNKRIVSGAYDGKIKVWDL 245
Query: 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
A V R + +++ S IW
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFR---LQFDEFQIVSSSHDDTILIW 292
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 1e-04
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Query: 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFM 205
GS+ K I+ ++ S+DGK L +A G + +++ S + F H + +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
+ G S + ++ + G S+ V
Sbjct: 62 KTTSKGDLFTVS--WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.8 bits (88), Expect = 0.001
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKGISCMAV 167
H ++A+S + G ++SA A+G + D TG F I+ +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.8 bits (88), Expect = 0.001
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 2/78 (2%)
Query: 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
+ I + S S + I WD G F D+ +T T +
Sbjct: 12 NKAITAL--SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 63 HLSVDYTCMKWLSVDRKK 80
+K +
Sbjct: 70 FTVSWDDHLKVVPAGGSG 87
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (91), Expect = 0.001
Identities = 30/238 (12%), Positives = 57/238 (23%), Gaps = 35/238 (14%)
Query: 13 FSPALDYFAICSGDARIKIWD--TLKGQVQTEFA------DIASTETTSLYGNRLEREHL 64
S + Y + D ++ + D + E I +++
Sbjct: 69 LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA----- 123
Query: 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS 124
W + + T G + H
Sbjct: 124 ---IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE---- 176
Query: 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAAGQLKT 183
I + G + +D + L S + + + + TAA
Sbjct: 177 ------FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230
Query: 184 FNCSDHKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
D K+ + + HPG G +S +G+ +AL TD
Sbjct: 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 630 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.93 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.83 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.82 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.74 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.68 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.63 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.62 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.62 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.52 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.49 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.47 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.37 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.24 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.14 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.12 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.08 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.08 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.97 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.96 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.8 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.79 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.78 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.73 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.7 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.66 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.54 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.53 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.51 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.5 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.45 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.42 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.38 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.18 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.12 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.95 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.88 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.85 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.82 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.78 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.76 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.59 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.2 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.19 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.14 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.1 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.1 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.98 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.87 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.65 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.24 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.98 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.94 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.91 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.81 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.71 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.52 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.14 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.99 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.07 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.95 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.62 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.79 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 88.17 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 87.35 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 81.6 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 81.37 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-35 Score=296.33 Aligned_cols=281 Identities=14% Similarity=0.196 Sum_probs=228.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+.+| .|++|+|+|++||+|+ ||.|+|||+.++.....+.... ..+| ...+.+++|.+.
T Consensus 51 ~~~V--~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~------------~~~h-~~~I~~v~~s~d------ 108 (337)
T d1gxra_ 51 GEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD------------CLNR-DNYIRSCKLLPD------ 108 (337)
T ss_dssp SSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE------------CSCT-TSBEEEEEECTT------
T ss_pred CCcE--EEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEee------------ecCC-CCcEEEEEEcCC------
Confidence 4678 5669999999999997 7999999998764332111000 0122 235677777664
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+++|++|+.||.|++||+.... .... ...|...+.+++|+|++.++++++.|+.|++|++.++++......|..
T Consensus 109 ---g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~ 184 (337)
T d1gxra_ 109 ---GCTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp ---SSEEEEEESSSEEEEEECCCC--EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred ---CCEEEEeecccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7789999999999999987543 3333 347889999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
.|.+++|+|++..+++++ +.|++||+++++.+..+. |...|.+++|+|+++++++++ .|+.|++|++......
T Consensus 185 ~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~--- 259 (337)
T d1gxra_ 185 GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKY--- 259 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEE---
T ss_pred ccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceec-cccccccccccccccc---
Confidence 999999999999999987 899999999999887765 889999999999999999887 6999999999887632
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhcc
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
....|. ..+..+.|+ |++.+|++++.||.|++||+.+++.+..
T Consensus 260 --~~~~~~-~~i~~v~~s-----~~g~~l~s~s~Dg~i~iwd~~~~~~~~~----------------------------- 302 (337)
T d1gxra_ 260 --QLHLHE-SCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQ----------------------------- 302 (337)
T ss_dssp --EECCCS-SCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEE-----------------------------
T ss_pred --cccccc-cccceEEEC-----CCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------------------
Confidence 223333 445666676 9999999999999999999876543210
Q ss_pred ccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
..|...|.+++|+|||++| ++|+.|+++++|++
T Consensus 303 ---------------------------~~~~~~v~~~~~s~d~~~l-~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 303 ---------------------------SKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp ---------------------------EECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred ---------------------------ccCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEE
Confidence 1356689999999999999 99999999999987
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-34 Score=285.83 Aligned_cols=279 Identities=14% Similarity=0.242 Sum_probs=238.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .+++|+|++++||+|+.||+|+|||+.+++++.++.+|...+. ++.|.+.
T Consensus 17 ~~~I--~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~------------------~~~~~~~------ 70 (317)
T d1vyhc1 17 RSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ------------------DISFDHS------ 70 (317)
T ss_dssp SSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE------------------EEEECTT------
T ss_pred CCCe--EEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE------------------EEeeecc------
Confidence 4688 5559999999999999999999999999999999886665544 4444443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+++.+..++.+.+|+.........+ .+|...+.++.|+|+++.+++++.|+.+++||+.+++.+..+..|...+
T Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 71 ---GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp ---SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ---ccccccccccccccccccccccccccc-ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence 778999999999999999888776444 5799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC--------------------cEEEEEeeC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--------------------KYVLSSAVG 220 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~--------------------~~l~~~~~~ 220 (630)
.+++|+|++.+|++++ +.|++|++.+++.+..+.+|...+.++.|+|++ .++++++ .
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 225 (317)
T d1vyhc1 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-R 225 (317)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-T
T ss_pred eeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-C
Confidence 9999999999999987 899999999999999999999999999998764 3566666 7
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeecc
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 300 (630)
|+.|++|++.+++. +..+..+...+..++++ |++.+|++|+.||.|+|||+.+++.+.
T Consensus 226 d~~i~~~~~~~~~~-----~~~~~~~~~~v~~~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~------------ 283 (317)
T d1vyhc1 226 DKTIKMWDVSTGMC-----LMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCMK------------ 283 (317)
T ss_dssp TSEEEEEETTTTEE-----EEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCCE------------
T ss_pred CCEEEEEECCCCcE-----EEEEeCCCCCEEEEEEC-----CCCCEEEEEECCCeEEEEECCCCcEEE------------
Confidence 99999999998763 33333444455666776 899999999999999999986554321
Q ss_pred CCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 301 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.+.+|...|.+++|+|+|.+| +||+.|+++++|+
T Consensus 284 -------------------------------------------~~~~h~~~V~~~~~s~~~~~l-~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 284 -------------------------------------------TLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE 317 (317)
T ss_dssp -------------------------------------------EEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred -------------------------------------------EEcCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEeC
Confidence 234678899999999999999 9999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-34 Score=294.99 Aligned_cols=302 Identities=16% Similarity=0.209 Sum_probs=226.6
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .|++|||||++||+|+ |++|+|||+.+++.+..+..+.....................+.+++|.+.
T Consensus 62 ~~~V--~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~------ 132 (388)
T d1erja_ 62 TSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD------ 132 (388)
T ss_dssp SSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT------
T ss_pred CCcE--EEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC------
Confidence 4688 5669999999999987 899999999999999888766544332211111011122446889999875
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+.+|++|+.||.|++|+...++.+... .+|...|.++.|++++..+++++.++.+++||+.+.........+...
T Consensus 133 ---~~~l~s~~~dg~v~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~- 207 (388)
T d1erja_ 133 ---GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV- 207 (388)
T ss_dssp ---SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE-
T ss_pred ---CCcceeccccccccccccccccccccc-ccccccccccccccccccccccccceeeeeeecccccccccccccccc-
Confidence 778999999999999999999888665 579999999999999999999999999999999998888777755554
Q ss_pred EEEEEc-cCCCEEEEeC--CeEEEEECCCCceeeEe-------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 163 SCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 163 ~~l~~~-p~~~~l~~~~--g~i~lwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.++.+. +++.+|++++ +.|++|+..++..+..+ .+|...|++++|+|++++|++++ .|+.|++||+...
T Consensus 208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~ 286 (388)
T d1erja_ 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNA 286 (388)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---
T ss_pred ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-CCCcEEEEeccCC
Confidence 445555 5888999887 89999999998776554 46888999999999999999988 6999999999876
Q ss_pred cccc-------ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcc
Q 006808 233 KKQS-------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305 (630)
Q Consensus 233 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (630)
.... ..+......+...+..+.|+ |++.+|++|+.||.|++||+.+++.+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~sg~~dg~i~vwd~~~~~~~~~---------------- 345 (388)
T d1erja_ 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLLM---------------- 345 (388)
T ss_dssp ------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEEE----------------
T ss_pred ccccccccccccceeeecccccceEEEEEEC-----CCCCEEEEEeCCCEEEEEECCCCcEEEE----------------
Confidence 5321 11122222333445566666 8999999999999999999987755332
Q ss_pred cccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEE------eecCCcceeeccccceecccccee
Q 006808 306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL------NCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 306 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~------~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+.+|.+.|.++ .|+|||.+| +|||.|+++++|++
T Consensus 346 ---------------------------------------l~~H~~~V~~~~~~~~~~~spd~~~l-~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 346 ---------------------------------------LQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKY 385 (388)
T ss_dssp ---------------------------------------EECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEEE
T ss_pred ---------------------------------------EeCCCCCEEEEEEecCcccCCCCCEE-EEEeCCCEEEEEee
Confidence 22444455544 478899999 99999999999998
Q ss_pred c
Q 006808 380 Q 380 (630)
Q Consensus 380 ~ 380 (630)
+
T Consensus 386 ~ 386 (388)
T d1erja_ 386 K 386 (388)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-33 Score=279.72 Aligned_cols=245 Identities=14% Similarity=0.152 Sum_probs=201.7
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
++++++|+|+.||.++ ++.|.+|++.++.....+.+|... ++|+.|.|. +.+
T Consensus 21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~------------------v~~~~~sp~---------g~~ 72 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQ------------------TTVAKTSPS---------GYY 72 (311)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSC------------------EEEEEECTT---------SSE
T ss_pred EEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCC------------------EEEEEEeCC---------CCe
Confidence 5669999999999986 567999999999888888766554 455555443 889
Q ss_pred EEEEeCCCeEEEEEccCCeee-EEccCCCCCCEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
|++|+.||.|++||+.++... .....+|..+|.+++|+|++++|++++. +..+++|++.+++...++.+|...|+++
T Consensus 73 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v 152 (311)
T d1nr0a1 73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV 152 (311)
T ss_dssp EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred EeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999987653 2334579999999999999999999875 4569999999999999999999999999
Q ss_pred EEccCCCE-EEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce---e
Q 006808 166 AVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS---C 239 (630)
Q Consensus 166 ~~~p~~~~-l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~---~ 239 (630)
+|+|++.+ +++|+ +.|++||+++++....+.+|..+|+++.|+|+++++++++ .|+.|++|++..+...... .
T Consensus 153 ~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~ 231 (311)
T d1nr0a1 153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDS 231 (311)
T ss_dssp EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEECBCTT
T ss_pred cccccceeeecccccccccccccccccccccccccccccccccccCcccccccccc-ccccccccccccccccccccccc
Confidence 99999885 66666 8999999999999999999999999999999999999988 6999999999887643100 0
Q ss_pred eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
.....|.. .+.++.|+ |++++|++|+.||.|+|||+.+++.++
T Consensus 232 ~~~~~h~~-~V~~~~~s-----~~~~~l~tgs~Dg~v~iwd~~t~~~~~ 274 (311)
T d1nr0a1 232 LKNVAHSG-SVFGLTWS-----PDGTKIASASADKTIKIWNVATLKVEK 274 (311)
T ss_dssp SSSCSSSS-CEEEEEEC-----TTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred cccccccc-cccccccC-----CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 11112333 45566776 999999999999999999998876644
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.6e-34 Score=290.59 Aligned_cols=323 Identities=11% Similarity=0.037 Sum_probs=221.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
..|| .|++|+|||++||+|+.||.|+|||+.+++ ++..+++|...+ .+++|.|.
T Consensus 7 ~~pI--t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V------------------~~l~fsp~---- 62 (371)
T d1k8kc_ 7 VEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQV------------------TGVDWAPD---- 62 (371)
T ss_dssp SSCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCE------------------EEEEEETT----
T ss_pred CCCe--EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCE------------------EEEEECCC----
Confidence 4689 566999999999999999999999998775 456666665544 45555443
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEE-ccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce----eEEe
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKF 155 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~-~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~----~~~~ 155 (630)
+++|++|+.|+.|++||+.++..... ...+|...|++++|+|+++.|++++.|+++++|++..... ....
T Consensus 63 -----~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~ 137 (371)
T d1k8kc_ 63 -----SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 137 (371)
T ss_dssp -----TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred -----CCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence 78899999999999999998765433 2357889999999999999999999999999999876543 2334
Q ss_pred ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCC------------------ceeeEeecCCCCeEEEEEeeCCcEEE
Q 006808 156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH------------------KKMQKFSGHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~------------------~~~~~~~~h~~~v~~l~~sp~~~~l~ 215 (630)
..|...|.+++|+|++.+|++|+ +.|++|+.... ..+....+|...|.+++|+|++++|+
T Consensus 138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 217 (371)
T d1k8kc_ 138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 217 (371)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence 56788999999999999999987 89999997643 23455678899999999999999999
Q ss_pred EEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeE
Q 006808 216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI 295 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 295 (630)
+++ .|+.|++||+.++.. +..+..+...+..+.|+ |++.+|++| .|+.+++|...............
T Consensus 218 s~~-~d~~i~iwd~~~~~~-----~~~~~~~~~~v~s~~fs-----~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~- 284 (371)
T d1k8kc_ 218 WVS-HDSTVCLADADKKMA-----VATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL- 284 (371)
T ss_dssp EEE-TTTEEEEEEGGGTTE-----EEEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC-
T ss_pred ccc-cCCcceEEeeecccc-----eeeeecccccceeeeec-----CCCCEEEEE-cCCceEEEEeeCCCceEEEeeee-
Confidence 988 699999999987653 33333344445566666 888777654 57877777654432211111000
Q ss_pred EeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc----eeeccccce
Q 006808 296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV----LLPMSQSLL 371 (630)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~----~l~~s~s~d 371 (630)
.... ............+.. .+..... .+. ..........|.+.|.++++.+.+. .+ +|+|.|
T Consensus 285 ~~~~--~~~~~~~~~~~~~~~--~~~~~~~--------~~~-~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~-~T~g~D 350 (371)
T d1k8kc_ 285 DVPK--QSSQRGLTARERFQN--LDKKASS--------EGS-AAAGAGLDSLHKNSVSQISVLSGGKAKCSQF-CTTGMD 350 (371)
T ss_dssp CCC----------CHHHHHHH--CCCCC------------------CCCSSSSSSCEEEEEEEESTTTSCSEE-EEEETT
T ss_pred cCcc--ccccccccceeeEec--ccceeEE--------ecc-ccccceecccccCCEEEEEEeCCCCcceEEE-EEEcCC
Confidence 0000 000000000001100 1100000 000 0000111125999999999987653 35 899999
Q ss_pred eccccceecc
Q 006808 372 KSKRGRYVQN 381 (630)
Q Consensus 372 ~~~~~w~~~~ 381 (630)
+.+++|+++.
T Consensus 351 g~v~iW~~~~ 360 (371)
T d1k8kc_ 351 GGMSIWDVRS 360 (371)
T ss_dssp SEEEEEEHHH
T ss_pred CeEEEEeCCc
Confidence 9999999854
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-32 Score=272.41 Aligned_cols=281 Identities=14% Similarity=0.173 Sum_probs=231.0
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++++||+|+.||+|+|||+.+++.+..+..|...+. +++|.+.
T Consensus 55 ~~~I--~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~------------------~v~~~~~------ 108 (340)
T d1tbga_ 55 LAKI--YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM------------------TCAYAPS------ 108 (340)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE------------------EEEECTT------
T ss_pred CCCE--EEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE------------------eeEeecc------
Confidence 4678 5569999999999999999999999999999998876655444 4555443
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee---eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~---~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+.++++|+.++.+.+|+...... ......+|........... +..+..+..+.....|.............+.
T Consensus 109 ---~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (340)
T d1tbga_ 109 ---GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp ---SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCS
T ss_pred ---ceeeeeecccceeecccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 78899999999999999876532 1223346777666666554 5577788889999999998888877788788
Q ss_pred CCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
..+....+.+.+.++++++ +.|++||+++++++.++.+|..+|++++|+|++++|++++ .|+.|++|++......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~~~~-- 261 (340)
T d1tbga_ 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-- 261 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE--
T ss_pred eeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecccccc--
Confidence 8999999999999999887 8999999999999999999999999999999999999988 6999999999887643
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA 317 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 317 (630)
..+........+..+.|+ |++.+|++|+.||.|++||+.+++.+.
T Consensus 262 -~~~~~~~~~~~i~~~~~s-----~~~~~l~~g~~dg~i~iwd~~~~~~~~----------------------------- 306 (340)
T d1tbga_ 262 -MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRAG----------------------------- 306 (340)
T ss_dssp -EEECCTTCCSCEEEEEEC-----SSSCEEEEEETTSCEEEEETTTCCEEE-----------------------------
T ss_pred -cccccccccCceEEEEEC-----CCCCEEEEEECCCEEEEEECCCCcEEE-----------------------------
Confidence 233333444456667776 999999999999999999986654321
Q ss_pred cccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 318 ~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
.+.+|.+.|.+++|+|||.+| +|||.|+++++|+
T Consensus 307 --------------------------~~~~H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 307 --------------------------VLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN 340 (340)
T ss_dssp --------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred --------------------------EEcCCCCCEEEEEEeCCCCEE-EEEccCCEEEEeC
Confidence 233788899999999999999 9999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.5e-32 Score=266.73 Aligned_cols=240 Identities=19% Similarity=0.244 Sum_probs=193.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEE--EEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
+.+| .+++|+|+|++||+|+.||+|+|||+.++... ..+..|.. .+.++.|.+.
T Consensus 58 ~~~v--~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~v~~v~~s~d---- 113 (311)
T d1nr0a1 58 SHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG------------------PVKDISWDSE---- 113 (311)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS------------------CEEEEEECTT----
T ss_pred CCCE--EEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccC------------------cccccccccc----
Confidence 4678 66699999999999999999999999887643 33443333 4566777654
Q ss_pred ccccCCcEEEEEeCC--CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEeec
Q 006808 81 KRKLGSSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRA 157 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~--g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~~ 157 (630)
+.++++++.+ ..+++|++.+++....+ .+|...|++++|+|++++ |++|+.|+.|++||+++++....+..
T Consensus 114 -----~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~ 187 (311)
T d1nr0a1 114 -----SKRIAAVGEGRERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187 (311)
T ss_dssp -----SCEEEEEECCSSCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred -----ccccccccccccccccccccccccccccc-cccccccccccccccceeeeccccccccccccccccccccccccc
Confidence 6678888765 44999999998887555 579999999999999885 78899999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe-------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 158 ~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
|..+|+++.|+|+++++++++ +.|++||+.++..+..+ .+|...|++++|+|++++|++++ .|+.|++||
T Consensus 188 ~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iwd 266 (311)
T d1nr0a1 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWN 266 (311)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEE
T ss_pred ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCCeEEEEE
Confidence 999999999999999999987 89999999998776655 36889999999999999999988 699999999
Q ss_pred cCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
+.+++.. ..+...+. .......+. +++.+|++++.||.|++||.+
T Consensus 267 ~~t~~~~---~~l~~~~~-~~~~~~~~~-----~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 267 VATLKVE---KTIPVGTR-IEDQQLGII-----WTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp TTTTEEE---EEEECCSS-GGGCEEEEE-----ECSSCEEEEETTCCEEEEETT
T ss_pred CCCCcEE---EEEECCCC-ccceEEEEE-----ecCCEEEEEECCCEEEEEeCC
Confidence 9988643 22222221 111222232 456789999999999999963
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.8e-30 Score=256.95 Aligned_cols=235 Identities=17% Similarity=0.247 Sum_probs=196.8
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCC--cEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
.++| .+++|+|+|++|++|+.||+|++||+... .....+..|.. .+.++.|.+.
T Consensus 97 ~~~I--~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~---- 152 (337)
T d1gxra_ 97 DNYI--RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP------------------ACYALAISPD---- 152 (337)
T ss_dssp TSBE--EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS------------------CEEEEEECTT----
T ss_pred CCcE--EEEEEcCCCCEEEEeecccccccccccccccccccccccccc------------------cccccccccc----
Confidence 3567 56699999999999999999999998754 34455554433 3445555443
Q ss_pred ccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 81 ~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+.++++++.++.|++|++.+++..... .+|...|.+++|++++..+++++.|+.+++||+++++.+..+. +..
T Consensus 153 -----~~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~ 225 (337)
T d1gxra_ 153 -----SKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS 225 (337)
T ss_dssp -----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred -----ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccceeecccc-ccc
Confidence 778999999999999999999887555 4799999999999999999999999999999999999888776 778
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
.|.+++|+|++.++++++ +.+++||+.++... ....|...|++++|+|++++|++++ .|+.|++||+.+++.
T Consensus 226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s-~Dg~i~iwd~~~~~~---- 299 (337)
T d1gxra_ 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS---- 299 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE----
T ss_pred ceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe-CCCeEEEEECCCCCE----
Confidence 999999999999999887 89999999988765 4567999999999999999999988 699999999998763
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
+....|...+ ..+.|+ |++++|++|+.||.|+|||+
T Consensus 300 -~~~~~~~~~v-~~~~~s-----~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 300 -IFQSKESSSV-LSCDIS-----VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -EEEEECSSCE-EEEEEC-----TTSCEEEEEETTSCEEEEEE
T ss_pred -EEEccCCCCE-EEEEEe-----CCCCEEEEEeCCCeEEEEEE
Confidence 3445555544 455666 99999999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=4.2e-30 Score=252.47 Aligned_cols=241 Identities=15% Similarity=0.171 Sum_probs=183.7
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+|++||+|+.||+|++||+.+++....+.. +| ...++++.|.+.
T Consensus 12 ~~~V--~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~----------------~h-~~~v~~v~~~~~------ 66 (299)
T d1nr0a2 12 NKAI--TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD----------------VH-ATMITGIKTTSK------ 66 (299)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC----------------SC-SSCEEEEEECTT------
T ss_pred CCCc--EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC----------------CC-CCcEEEEEeecc------
Confidence 4688 5559999999999999999999999999998876641 22 235667777653
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeee--EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~--~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
+ .+++++.++.+++|+....... ......|...+.+++|+|+|..++++ .++.+++|+.. +..... ...
T Consensus 67 ---g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~--~~~~~~--~~~ 137 (299)
T d1nr0a2 67 ---G-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG--KLTEVP--ISY 137 (299)
T ss_dssp ---S-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT--EEEEEE--CSS
T ss_pred ---c-eeecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-ccccccccccc--cccccc--ccc
Confidence 3 3677888999999998754321 12223467889999999999877665 45689999953 222222 345
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceee-EeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
.+.+++|+|+++++++++ |.|++||+.+++... ....|..+|++++|+|++++|++++ .|+.|++|++.++....
T Consensus 138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~- 215 (299)
T d1nr0a2 138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFELA- 215 (299)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEES-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc-
Confidence 678999999999999987 899999998877543 3456899999999999999999887 69999999998765331
Q ss_pred eeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
....+..+...+.++.|+ |++.+|++|+.||.|++||+.++.
T Consensus 216 -~~~~~~~h~~~v~~l~~s-----~~~~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 216 -HTNSWTFHTAKVACVSWS-----PDNVRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp -CCCCCCCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTCTT
T ss_pred -cccccccccccccccccc-----ccccceEEEcCCCEEEEEECCCCC
Confidence 122233334456667776 999999999999999999987653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.3e-29 Score=252.15 Aligned_cols=307 Identities=11% Similarity=0.139 Sum_probs=220.3
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
+++++|++||+|+.||+|+|||+.+++++.++.+|... +.+++|.+ +.+|++
T Consensus 18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~------------------V~~l~~s~----------~~~l~s 69 (355)
T d1nexb2 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG------------------VWALKYAH----------GGILVS 69 (355)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSC------------------EEEEEEET----------TTEEEE
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCC------------------EEEEEEcC----------CCEEEE
Confidence 35667899999999999999999999999999866544 44566643 457999
Q ss_pred EeCCCeEEEEEccCCeeeEEccC-CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe---------------
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF--------------- 155 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~--------------- 155 (630)
|+.||.|++|+............ .+...+....+++++..+++++.|+.|++||+.+.......
T Consensus 70 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T d1nexb2 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 149 (355)
T ss_dssp EETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred EecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence 99999999999999887655442 23334566777889999999999999999999876543221
Q ss_pred --------ecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEE
Q 006808 156 --------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225 (630)
Q Consensus 156 --------~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~ 225 (630)
..|...+ ..+.+++.+++++. +.|++||+.+++.+..+.++...+.++.|+|++.++++++ .|+.|+
T Consensus 150 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~ 226 (355)
T d1nexb2 150 NPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIR 226 (355)
T ss_dssp CTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEE
T ss_pred ccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccc-ccceEE
Confidence 1122222 34556778888877 8999999999999999999999999999999999999988 699999
Q ss_pred EEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc-CceeEEeeccCCCc
Q 006808 226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT-KATKILSSSEDVNS 304 (630)
Q Consensus 226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~ 304 (630)
+|++.++... ..+..+...+.++.+ ++.+|++++.||.|++||+.++...... ...... ...++
T Consensus 227 i~d~~~~~~~-----~~~~~h~~~v~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~ 291 (355)
T d1nexb2 227 IWDLENGELM-----YTLQGHTALVGLLRL-------SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA---ITTFY 291 (355)
T ss_dssp EEETTTCCEE-----EEECCCSSCCCEEEE-------CSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCC---CCEEE
T ss_pred eeeccccccc-----ccccccccccccccc-------ccceeeeeecccccccccccccceecccccCCceE---EEEEc
Confidence 9999987633 333333444455554 3689999999999999999877543321 111111 11133
Q ss_pred ccccchhhhhhhccccccccCCceeEEEEEcCccCcee-eEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF-QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+++ .+++++.|+.+++|+. .....+ ..+.+|...|++++|+|+. ++ ++++.|+.+++|-.
T Consensus 292 ~~~-----~~l~~g~d~~i~vwd~--------~tg~~~~~~~~~~~~~V~~v~~~~~~-~~-~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 292 VSD-----NILVSGSENQFNIYNL--------RSGKLVHANILKDADQIWSVNFKGKT-LV-AAVEKDGQSFLEIL 352 (355)
T ss_dssp ECS-----SEEEEEETTEEEEEET--------TTCCBCCSCTTTTCSEEEEEEEETTE-EE-EEEESSSCEEEEEE
T ss_pred CCC-----CEEEEEeCCEEEEEEC--------CCCCEEEEEecCCCCCEEEEEEcCCe-EE-EEEECCCcEEEEEE
Confidence 333 4555566776665431 112222 2345789999999999974 55 78899999887754
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.9e-28 Score=246.72 Aligned_cols=243 Identities=19% Similarity=0.295 Sum_probs=192.3
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .+++|+|+|++|++|+.||.|++|+..+++.+..+.+|...+. ++.|.+.
T Consensus 122 ~~V--~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~------- 174 (388)
T d1erja_ 122 LYI--RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY------------------SLDYFPS------- 174 (388)
T ss_dssp CBE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEECTT-------
T ss_pred CCE--EEEEECCCCCcceeccccccccccccccccccccccccccccc------------------ccccccc-------
Confidence 457 4569999999999999999999999999999888876654444 4445443
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCceeEEee------
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFR------ 156 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~v~iwd~~~~~~~~~~~------ 156 (630)
+..+++++.+|.+++||..+........ +.....++.+++ ++.+|++++.|+.|++||+.++.....+.
T Consensus 175 --~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~ 250 (388)
T d1erja_ 175 --GDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 250 (388)
T ss_dssp --SSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------
T ss_pred --cccccccccceeeeeeeccccccccccc--cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc
Confidence 6778999999999999999988775553 334555555655 88999999999999999999988776653
Q ss_pred -cCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCc------------eeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 157 -ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 157 -~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~------------~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
+|...|.+++|+|++++|++++ |.|++||+.++. .......|...|++++|+|++++|++++ .|
T Consensus 251 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~d 329 (388)
T d1erja_ 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KD 329 (388)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TT
T ss_pred cCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe-CC
Confidence 4678999999999999999987 899999997653 2344567889999999999999999988 69
Q ss_pred CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
|.|++||+.+++.. ..+ ..|...+..+.+.....++|++.+|++|+.||.|+||+++
T Consensus 330 g~i~vwd~~~~~~~---~~l-~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 330 RGVLFWDKKSGNPL---LML-QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SEEEEEETTTCCEE---EEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCCCcEE---EEE-eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999999988743 222 2355555555544445567999999999999999999974
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.1e-28 Score=240.36 Aligned_cols=309 Identities=13% Similarity=0.136 Sum_probs=224.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
++| ++ +++++|++|||||.||+|+|||+.+++++.++.+|...+ .++.|.
T Consensus 17 ~~V--~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V------------------~~v~~~--------- 66 (342)
T d2ovrb2 17 DHV--IT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV------------------WSSQMR--------- 66 (342)
T ss_dssp TSC--EE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCE------------------EEEEEE---------
T ss_pred Cce--EE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCE------------------EEEEeC---------
Confidence 456 44 477789999999999999999999999999888665443 445553
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.+|++|+.|+.+++|+........... .+...+....+. ...+..+..|+.+.+|+..+++....+........
T Consensus 67 --~~~l~s~s~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
T d2ovrb2 67 --DNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141 (342)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred --CCccccceecccccccccccccceeccc-ccceeEeeeecc--cccccccccceeEEEeecccccceeeeecccccce
Confidence 3479999999999999999887765543 455566665554 45788889999999999999988887775555433
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
. +.+....+++++ +.|++||......+..+.+|...+..+ ++++.++++++ .|+.|++||+...+.. .
T Consensus 142 ~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~-~dg~i~~~d~~~~~~~-----~ 211 (342)
T d2ovrb2 142 C--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS-LDTSIRVWDVETGNCI-----H 211 (342)
T ss_dssp E--EEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE-TTSCEEEEETTTCCEE-----E
T ss_pred e--eccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe-CCCeEEEeecccceee-----e
Confidence 3 334445555555 899999999999999999888776654 55788899887 6999999999887633 3
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCc---eeEEeeccCCCcccccchhhhhhhcc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAK 318 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~ 318 (630)
....+...+.++. +++.+|++++.||.|++||....+....... ....+.+ +..+++ .+++|+
T Consensus 212 ~~~~~~~~v~~~~-------~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~s~s 277 (342)
T d2ovrb2 212 TLTGHQSLTSGME-------LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC---LQFNKN----FVITSS 277 (342)
T ss_dssp EECCCCSCEEEEE-------EETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE---EEECSS----EEEEEE
T ss_pred EecccccceeEEe-------cCCCEEEEEcCCCEEEEEecccccccccccccceeeeceee---cccCCC----eeEEEc
Confidence 3333333444444 3468999999999999999887765443221 1111111 122333 789999
Q ss_pred ccccccCCceeEEEEEcCccCceeeEE-----eccCCCcEEEeecCCcceeeccccceec----cccceec
Q 006808 319 LQDIVKPASVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ 380 (630)
Q Consensus 319 ~d~~~~~~~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~ 380 (630)
.||.+++|+. .....+.++ .+|...|++++|+|+|.+| ++|+.||+ +++|++.
T Consensus 278 ~Dg~i~iwd~--------~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l-a~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 278 DDGTVKLWDL--------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp TTSEEEEEET--------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred CCCEEEEEEC--------CCCCEEEEEecccCCCCCCCEEEEEECCCCCEE-EEEeCCCCCeeEEEEEeCC
Confidence 9887776542 122233333 2577889999999999999 99998886 7889874
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.3e-28 Score=245.11 Aligned_cols=244 Identities=17% Similarity=0.194 Sum_probs=185.0
Q ss_pred eEeEECCCCCEEEEeeCCC-cEEEEECCCCc--EEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 9 ILTSFSPALDYFAICSGDA-RIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg-~i~vwd~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
.+++|+|+|+.||+++.+. .|+.|+..... ....+. +|....+++++|.|...
T Consensus 21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------gh~~~~v~~v~fsP~~~------- 76 (325)
T d1pgua1 21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-----------------GHGSSVVTTVKFSPIKG------- 76 (325)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-----------------TTTTSCEEEEEECSSTT-------
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-----------------CCCCCCEEEEEEeeCCC-------
Confidence 5669999999999887653 35666654332 233443 55566788888887532
Q ss_pred CcEEEEEeCCCeEEEEEccCCeee-------EEccCCCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEee
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLK-------WRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~-------~~~~~~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~~ 156 (630)
+.+|++|+.||+|+|||+..+... ......|.++|.+++|+++|+++++++ .++.+++|+..+++++..+.
T Consensus 77 g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (325)
T d1pgua1 77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS 156 (325)
T ss_dssp CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC
T ss_pred CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee
Confidence 678999999999999999765421 112235889999999999999988775 46789999999999999999
Q ss_pred cCCCCeEEEEEccCCCE-EEEeC--CeEEEEECCCCceeeEe---ecCCCCeEEEEEeeC-CcEEEEEeeCCCeEEEEEc
Q 006808 157 ASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 157 ~~~~~v~~l~~~p~~~~-l~~~~--g~i~lwd~~~~~~~~~~---~~h~~~v~~l~~sp~-~~~l~~~~~~d~~i~vwd~ 229 (630)
+|...|.+++|+|++.+ +++++ +.+++||..+++....+ ..|...|++++|+|+ +.+|++++ .|+.|++||+
T Consensus 157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~-~d~~i~iwd~ 235 (325)
T d1pgua1 157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDG 235 (325)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEET
T ss_pred ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc-cccceeeeee
Confidence 99999999999998875 55565 89999999888765554 456788999999997 56777776 6999999999
Q ss_pred CCCccccceeeeeec-CCcee---eeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 230 DGVKKQSASCVLAME-HPAVF---MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
++++.. ..+. |...+ +....+ |+|.+|++++.||.|+|||+.+++.++
T Consensus 236 ~~~~~~-----~~l~~~~~~v~~~~~s~~~------~dg~~l~s~s~D~~i~iwd~~~~~~~~ 287 (325)
T d1pgua1 236 KSGEFL-----KYIEDDQEPVQGGIFALSW------LDSQKFATVGADATIRVWDVTTSKCVQ 287 (325)
T ss_dssp TTCCEE-----EECCBTTBCCCSCEEEEEE------SSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred cccccc-----ccccccccccccceeeeec------cCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 887643 2222 22222 222223 688999999999999999998776543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.8e-27 Score=227.69 Aligned_cols=269 Identities=14% Similarity=0.215 Sum_probs=203.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEE
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL 91 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~ 91 (630)
++++||++||+|+.||+|+|||+.+++++.++.+|... ++++.|. +++|++
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~------------------V~~v~~~-----------~~~l~s 70 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS------------------VLCLQYD-----------ERVIIT 70 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC------------------EEEEECC-----------SSEEEE
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC------------------Eeeeecc-----------cceeec
Confidence 35668999999999999999999999999999866543 4455552 668999
Q ss_pred EeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---eEEeecCCCCeEEEEEc
Q 006808 92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKGISCMAVS 168 (630)
Q Consensus 92 ~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~ 168 (630)
|+.||.|++|++..+........ +... ...+.+....++++..++.+.+|+...... ...+..|...+.++.+.
T Consensus 71 ~s~D~~i~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 147 (293)
T d1p22a2 71 GSSDSTVRVWDVNTGEMLNTLIH-HCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 147 (293)
T ss_dssp EETTSCEEEEESSSCCEEEEECC-CCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred ccccccccccccccccccccccc-cccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceec
Confidence 99999999999999987755542 2222 334455667899999999999999887653 34456677788888777
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
+. .+++++ +.|++||+.+++.+..+.+|...+..+.++ +.++++++ .|+.|++||+.+.... ......
T Consensus 148 ~~--~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~i~d~~~~~~~-----~~~~~~ 217 (293)
T d1p22a2 148 DK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGACL-----RVLEGH 217 (293)
T ss_dssp TT--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE-----EEECCC
T ss_pred cc--ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCEEEEEecccceee-----eeeccc
Confidence 65 444444 899999999999999999999999888776 56788887 6999999999887643 222223
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCC
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA 326 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 326 (630)
...+. .+. +++.+|++|+.||.|++||+.+........
T Consensus 218 ~~~v~--~~~-----~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----------------------------------- 255 (293)
T d1p22a2 218 EELVR--CIR-----FDNKRIVSGAYDGKIKVWDLVAALDPRAPA----------------------------------- 255 (293)
T ss_dssp SSCEE--EEE-----CCSSEEEEEETTSCEEEEEHHHHTSTTSCT-----------------------------------
T ss_pred ceeee--ecc-----ccceEEEEEcCCCEEEEEECCCCccccccC-----------------------------------
Confidence 32332 233 678999999999999999986543321110
Q ss_pred ceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccce
Q 006808 327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY 378 (630)
Q Consensus 327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~ 378 (630)
....+..+.+|.+.|++++| |+.+| +|+|.|+++++||
T Consensus 256 -----------~~~~~~~~~~H~~~V~~v~~--d~~~l-~s~s~Dg~i~iWD 293 (293)
T d1p22a2 256 -----------GTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWD 293 (293)
T ss_dssp -----------TTTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC
T ss_pred -----------CceeeEEecCCCCCEEEEEE--cCCEE-EEEecCCEEEEeC
Confidence 01123356689999999988 56788 9999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=7.5e-28 Score=244.28 Aligned_cols=243 Identities=9% Similarity=0.068 Sum_probs=190.8
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeee-EEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEe
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID 145 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd 145 (630)
+++|++|.+. +.+|++|+.+|.|+|||..+++.. ...+.+|.++|++++|+|++++|++|+.|++|++||
T Consensus 9 pIt~~~~s~d---------g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd 79 (371)
T d1k8kc_ 9 PISCHAWNKD---------RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79 (371)
T ss_dssp CCCEEEECTT---------SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CeEEEEECCC---------CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence 5789999875 778999999999999999887642 233468999999999999999999999999999999
Q ss_pred CCCCcee--EEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCce----eeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 146 PLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 146 ~~~~~~~--~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
+.++... ..+..|...|.+++|+|++++|++++ ++|++|++..... ......|...|.+++|+|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence 9877544 44566788999999999999999987 8999998876543 23345788999999999999999988
Q ss_pred eeCCCeEEEEEcCCCcccc-------------ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCc
Q 006808 218 AVGERYIALWRTDGVKKQS-------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI 284 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 284 (630)
+ .|+.|++|++....... .........+...+..++|+ |++.+|++++.||.|++||+.++
T Consensus 160 s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~s~~~d~~i~iwd~~~~ 233 (371)
T d1k8kc_ 160 S-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-----ANGSRVAWVSHDSTVCLADADKK 233 (371)
T ss_dssp E-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-----SSSSEEEEEETTTEEEEEEGGGT
T ss_pred c-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-----cccccccccccCCcceEEeeecc
Confidence 7 69999999987643210 01222223334445666776 99999999999999999998544
Q ss_pred ccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCccee
Q 006808 285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL 364 (630)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (630)
..+ ..+..|..+|.+++|+|||.+|
T Consensus 234 ~~~-------------------------------------------------------~~~~~~~~~v~s~~fs~d~~~l 258 (371)
T d1k8kc_ 234 MAV-------------------------------------------------------ATLASETLPLLAVTFITESSLV 258 (371)
T ss_dssp TEE-------------------------------------------------------EEEECSSCCEEEEEEEETTEEE
T ss_pred cce-------------------------------------------------------eeeecccccceeeeecCCCCEE
Confidence 321 1233667789999999999988
Q ss_pred eccccceeccccceecc
Q 006808 365 PMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 365 ~~s~s~d~~~~~w~~~~ 381 (630)
++|+ |+.+++|....
T Consensus 259 -a~g~-d~~~~~~~~~~ 273 (371)
T d1k8kc_ 259 -AAGH-DCFPVLFTYDS 273 (371)
T ss_dssp -EEET-TSSCEEEEEET
T ss_pred -EEEc-CCceEEEEeeC
Confidence 7766 77777876643
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=7.3e-27 Score=229.61 Aligned_cols=237 Identities=18% Similarity=0.260 Sum_probs=201.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|++.++++++.++.+.+|+.........+..+...+. ++.|.+.
T Consensus 59 ~~~V--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~------ 112 (317)
T d1vyhc1 59 TDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS------------------SVSIMPN------ 112 (317)
T ss_dssp SSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE------------------EEEECSS------
T ss_pred CCcE--EEEeeecccccccccccccccccccccccccccccccccccce------------------eeeccCC------
Confidence 4577 5559999999999999999999999988887776665444333 4444433
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++++.++.+++||+.++.....+ .+|...+.+++|+|++.+|++++.|+.|++|++.+++....+..+...+
T Consensus 113 ---~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i 188 (317)
T d1vyhc1 113 ---GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188 (317)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred ---CceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCc
Confidence 678999999999999999999887665 4799999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCC--------------------CEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeC
Q 006808 163 SCMAVSSDG--------------------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG 220 (630)
Q Consensus 163 ~~l~~~p~~--------------------~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~ 220 (630)
.+++|+|++ .++++++ +.|++||+.+++++.++.+|..+|.+++|+|++++|++++ .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~ 267 (317)
T d1vyhc1 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-D 267 (317)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-T
T ss_pred eEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE-C
Confidence 999998764 3566666 8999999999999999999999999999999999999988 6
Q ss_pred CCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
||.|++||+.+++.. ..+..+...+.++.|+ |++.+|++|+.||.|+|||
T Consensus 268 dg~i~iwd~~~~~~~-----~~~~~h~~~V~~~~~s-----~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 268 DKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp TTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC
T ss_pred CCeEEEEECCCCcEE-----EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEeC
Confidence 999999999987643 2333334445666776 9999999999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.7e-27 Score=235.39 Aligned_cols=247 Identities=12% Similarity=0.125 Sum_probs=184.0
Q ss_pred cccceeEeEECC--CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 4 SNIRDILTSFSP--ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 4 ~~V~~~~~~fs~--dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+| .+++|+| +|.+||+|+.||+|+|||+..+.....+..+..... . .| ...+.++.|.+.
T Consensus 64 ~~v--~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~----~-----~~-~~~v~~v~~s~~----- 126 (325)
T d1pgua1 64 SVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF----Q-----VL-AGPISDISWDFE----- 126 (325)
T ss_dssp SCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE----E-----CC-SSCEEEEEECTT-----
T ss_pred CCE--EEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccc----c-----cc-cCcEEEEEECCC-----
Confidence 567 5569998 678999999999999999876654333322111000 0 11 235677888664
Q ss_pred cccCCcEEEEEeC--CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEee--
Q 006808 82 RKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR-- 156 (630)
Q Consensus 82 ~~~~~~~l~~~~~--~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~-- 156 (630)
+..+++++. ++.+.+|+..+++.+..+ .+|...|.+++|+|++.+ +++++.|+.+++||+.+++....+.
T Consensus 127 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~ 201 (325)
T d1pgua1 127 ----GRRLCVVGEGRDNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH 201 (325)
T ss_dssp ----SSEEEEEECCSSCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred ----CCccceeeccccceEEEEeecccccceee-eecccccccccccccccceEEEeecccccccccccccccceecccc
Confidence 566776664 456999999999888666 479999999999998875 6789999999999998887666644
Q ss_pred -cCCCCeEEEEEccC-CCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEe---eCCcEEEEEeeCCCeEEEEEc
Q 006808 157 -ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---DNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 157 -~~~~~v~~l~~~p~-~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s---p~~~~l~~~~~~d~~i~vwd~ 229 (630)
.|...|.+++|+|+ +.++++++ +.|++||+++++.+.++.+|..++.++.|+ |+|++|++++ .|+.|+|||+
T Consensus 202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iwd~ 280 (325)
T d1pgua1 202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDV 280 (325)
T ss_dssp SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEET
T ss_pred cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEEEEC
Confidence 45668999999996 67888776 899999999999999999998888777666 7899999988 6999999999
Q ss_pred CCCccccceeeeeecCCc-eeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 230 DGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
.+++.. ..+....+. ......+.. +.+.+|++++.||.|+|||+
T Consensus 281 ~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 281 TTSKCV---QKWTLDKQQLGNQQVGVVA-----TGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTTEEE---EEEECCTTCGGGCEEEEEE-----EETTEEEEEETTSCEEEEET
T ss_pred CCCCEE---EEEEecCCcccCeEEEEEE-----CCCCEEEEEECCCEEEEEEC
Confidence 988744 222322222 121122221 23468999999999999995
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=1.3e-26 Score=227.17 Aligned_cols=228 Identities=15% Similarity=0.198 Sum_probs=179.4
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCce---eEEeecCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v 162 (630)
+.+|++|+.||.|++||+.+++....+..+|...|++++|+|+|. +++++.|+.+++|+...... ......+...+
T Consensus 24 g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~ 102 (299)
T d1nr0a2 24 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP 102 (299)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCccccccccccccccccc
Confidence 788999999999999999999988777778999999999999987 55667899999999765422 12234466788
Q ss_pred EEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeee
Q 006808 163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~ 241 (630)
.+++|+|++.++++++ +.+++|+... ..... ....+.+++|+|+++++++++ .|+.|++||+.+.... ...
T Consensus 103 ~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~---~~~ 174 (299)
T d1nr0a2 103 LGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVK 174 (299)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEE
T ss_pred ccccccccccccccccccccccccccc--ccccc--ccccccccccccccccccccc-cccccccccccccccc---ccc
Confidence 9999999999888887 8999999542 22222 345678999999999999887 6999999999876543 233
Q ss_pred eecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccc
Q 006808 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD 321 (630)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~ 321 (630)
...|... +.++.++ |++.+|++++.||.|++||+.++..+....
T Consensus 175 ~~~~~~~-i~~~~~~-----~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~------------------------------ 218 (299)
T d1nr0a2 175 TIVHPAE-ITSVAFS-----NNGAFLVATDQSRKVIPYSVANNFELAHTN------------------------------ 218 (299)
T ss_dssp EEECSSC-EEEEEEC-----TTSSEEEEEETTSCEEEEEGGGTTEESCCC------------------------------
T ss_pred ccccccc-ccccccc-----cccccccccccccccccccccccccccccc------------------------------
Confidence 4445444 4556666 899999999999999999986654321110
Q ss_pred cccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
.+.+|...|.+++|+|+|.+| ++|+.|+.+++|++..
T Consensus 219 ----------------------~~~~h~~~v~~l~~s~~~~~l-~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 219 ----------------------SWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMNK 255 (299)
T ss_dssp ----------------------CCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTC
T ss_pred ----------------------cccccccccccccccccccce-EEEcCCCEEEEEECCC
Confidence 123677899999999999999 9999999999999853
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=2.2e-26 Score=231.42 Aligned_cols=316 Identities=12% Similarity=-0.005 Sum_probs=214.3
Q ss_pred eEeEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
....||| ||+++|+++. |.|+|||..++...+. +|.. .+.++.|.|. ++
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~------------------~v~~~~~spD---------g~ 55 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPL------------------RIRYVRRGGD---------TK 55 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCS------------------CEEEEEECSS---------SE
T ss_pred hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCC------------------CEEEEEECCC---------CC
Confidence 3458999 9999999875 7999999988876642 2332 4556666664 56
Q ss_pred EEEEEeCC-C-eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 88 LLVLGTGG-G-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 88 ~l~~~~~~-g-~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
.|++++.+ | .|++||..+++.. .+ ..|...|.+++|+|+|++|++++.++.+++|++.+++....+..+...+.++
T Consensus 56 ~l~~~~~~~g~~v~v~d~~~~~~~-~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (360)
T d1k32a3 56 VAFIHGTREGDFLGIYDYRTGKAE-KF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 133 (360)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEE-EC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred EEEEEEcCCCCEEEEEECCCCcEE-Ee-eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccch
Confidence 67666544 3 5899999988775 33 4799999999999999999999999999999999999999999898999999
Q ss_pred EEccCCCEEEEeC------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 166 AVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 166 ~~~p~~~~l~~~~------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
+|+|+|++|+.+. +.+++|++.+++... +..|...+..+.|+|+|++|++++ .++.+.+|+.....
T Consensus 134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s-~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS-YRSLDPSPDRVVLN 211 (360)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE-SCCCCCEECSSSSC
T ss_pred hhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEe-CCCceEcccccccc
Confidence 9999999998653 368999998886543 445777889999999999999988 69999999976543
Q ss_pred ccc--ceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCCccc--ccccCceeEEeeccCCCc
Q 006808 234 KQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEE--LRNTKATKILSSSEDVNS 304 (630)
Q Consensus 234 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 304 (630)
... ..................+ ++++..++++..+. .+..++...+.. +.........+.. ..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 285 (360)
T d1k32a3 212 FSFEVVSKPFVIPLIPGSPNPTKL-----VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV-PVHG 285 (360)
T ss_dssp EECCSCBEEEEEESSTTCCCGGGC-----CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEEC-CCCC
T ss_pred eeeccccceEEEecccCccccceE-----CCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEE-EecC
Confidence 210 0001111111111111222 26666665544322 233344443322 2222222222221 1122
Q ss_pred ccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
+.. ..+++++.++.++.++ ... . ++..|.+.|.+++|||||++| ++++.|+.+++|+++.
T Consensus 286 ~~~----~~~~~~~~~~~i~~~d--------~~~-~---~~~~~~~~v~~~~~SpDG~~l-~~~~~Dg~i~v~d~~~ 345 (360)
T d1k32a3 286 EFA----AYYQGAPEKGVLLKYD--------VKT-R---KVTEVKNNLTDLRLSADRKTV-MVRKDDGKIYTFPLEK 345 (360)
T ss_dssp SHH----HHHHCCCCCEEEEEEE--------TTT-C---CEEEEEEEEEEEEECTTSCEE-EEEETTSCEEEEESSC
T ss_pred CCe----eEEEecCCCCEEEEEE--------CCC-C---eEEEecCCcCEEEECCCCCEE-EEEECCCeEEEEECCC
Confidence 222 2566666654433322 111 1 223455668999999999999 9999999999999854
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=3e-24 Score=213.59 Aligned_cols=236 Identities=18% Similarity=0.300 Sum_probs=190.5
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcE----EEEecccccccccccccccccccccccceeeEEeccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
.++| .+++|+|+|.++++|+.|+.+++|+...... ...+.+ |... ..+..+..
T Consensus 97 ~~~v--~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~--- 153 (340)
T d1tbga_ 97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-----------------HTGY-LSCCRFLD--- 153 (340)
T ss_dssp CSCE--EEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECC-----------------CSSC-EEEEEEEE---
T ss_pred cccE--EeeEeeccceeeeeecccceeecccccccccccccceeccc-----------------cccc-cccccccc---
Confidence 5678 5669999999999999999999999765432 222222 2111 11111111
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
...+..+..++....|............ .+...+....+.+.+.++++++.|+.|++||+++++++..+.+|
T Consensus 154 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h 225 (340)
T d1tbga_ 154 -------DNQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp -------TTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC
T ss_pred -------cccccccccccccccccccccccccccc-ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCC
Confidence 5567888889999999888777654443 57788999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe--ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
...|++++|+|++.+|++++ |.|++|++.....+..+ ..|...|++++|+|++++|++++ .|+.|++||+.+++.
T Consensus 226 ~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~ 304 (340)
T d1tbga_ 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR 304 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE-TTSCEEEEETTTCCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE-CCCEEEEEECCCCcE
Confidence 99999999999999999987 89999999998877665 35667899999999999999988 699999999988763
Q ss_pred ccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
+..+..+...+.++.|+ |++.+|++|+.||.|+|||
T Consensus 305 -----~~~~~~H~~~V~~l~~s-----~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 305 -----AGVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred -----EEEEcCCCCCEEEEEEe-----CCCCEEEEEccCCEEEEeC
Confidence 33444344456667777 9999999999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.3e-25 Score=219.94 Aligned_cols=288 Identities=12% Similarity=0.073 Sum_probs=201.1
Q ss_pred cccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
..| .+++|+|+|++||+|+.||+|+|||+.++.....+... .+| ...+.+++|.+.+
T Consensus 12 d~I--~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~--------------~~h-~~~V~~v~f~~~~------ 68 (342)
T d1yfqa_ 12 DYI--SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS--------------LRY-KHPLLCCNFIDNT------ 68 (342)
T ss_dssp SCE--EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE--------------EEC-SSCEEEEEEEESS------
T ss_pred CCE--EEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe--------------cCC-CCCEEEEEEeCCC------
Confidence 458 45599999999999999999999999776543333210 022 2357788887764
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE----eecC-
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRAS- 158 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~- 158 (630)
+.+|++|+.||.|++|++..+.........+........+.+++..+++++.++++++||++++..... ...+
T Consensus 69 --~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~ 146 (342)
T d1yfqa_ 69 --DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp --SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred --CCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccc
Confidence 568999999999999999988877666655556666777778888999999999999999875433222 2222
Q ss_pred -CCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeE---eecCCCCeEEEEEee-CCcEEEEEeeCCCeEEEEEcCC
Q 006808 159 -TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK---FSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 159 -~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~---~~~h~~~v~~l~~sp-~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
........+.+.+..+++++ +.|++|++........ ...+...+.+..+.+ ++..+++++ .|+.+.+|++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~v~~~~~ 225 (342)
T d1yfqa_ 147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDD 225 (342)
T ss_dssp SSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCT
T ss_pred ccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec-CCCeEEEEEecC
Confidence 22445667778888888877 8999999987764332 234445566666655 455666666 699999999876
Q ss_pred Cccccc---eee-------eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccC
Q 006808 232 VKKQSA---SCV-------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED 301 (630)
Q Consensus 232 ~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 301 (630)
...... ... .........+.+++|+ |++.+|++|+.||.|+|||+.+++.+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~---------- 290 (342)
T d1yfqa_ 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIKNFA---------- 290 (342)
T ss_dssp TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEEECC----------
T ss_pred CcceeeccccceeeeeeeccCCCcccccceeEEec-----CCccEEEEECCCCEEEEEECCCCcEEEEec----------
Confidence 432210 000 0011223345667777 999999999999999999998776543221
Q ss_pred CCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+...+..++|+|+|.+| ++++.|.+.++|..
T Consensus 291 ----------------------------------------------~~~~~~~~~~s~~~~~l-~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 291 ----------------------------------------------KFNEDSVVKIACSDNIL-CLATSDDTFKTNAA 321 (342)
T ss_dssp ----------------------------------------------CCSSSEEEEEEECSSEE-EEEEECTHHHHCSS
T ss_pred ----------------------------------------------CCCCCEEEEEEeCCCEE-EEEEcCCcEEEeee
Confidence 01134456788899998 77777888888865
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.3e-25 Score=226.45 Aligned_cols=257 Identities=16% Similarity=0.220 Sum_probs=172.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEE------EecccccccccccccccccccccccceeeEEeccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT------EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV 76 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~ 76 (630)
.++| .++++++ +++++||.|++|+|||..+..... ....+... .|......+..+...
T Consensus 14 ~~~I--~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 77 (393)
T d1sq9a_ 14 DADI--FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG------------LHHVDVLQAIERDAF 77 (393)
T ss_dssp SSCE--EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTC------------EEEEEEEEEEETTTE
T ss_pred cCcc--EEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCC------------ceEeeeEeeeccCCC
Confidence 4678 4447764 699999999999999976654211 00000000 000001111111111
Q ss_pred ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEE-------c--cCCCCCCEEEEEEecC-----CCEEEEEeCCCcEE
Q 006808 77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-------L--SDCHPGGVSAISFATH-----GSCIYSAGADGMVC 142 (630)
Q Consensus 77 ~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~-------~--~~~h~~~v~~~~~s~~-----g~~l~s~~~dg~v~ 142 (630)
. ..++++++.+|.|++|++........ . ...+...+..++|.++ +.++++++.||+++
T Consensus 78 ~--------~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 149 (393)
T d1sq9a_ 78 E--------LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY 149 (393)
T ss_dssp E--------EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred C--------CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEE
Confidence 1 45788999999999999865432110 0 1124456888888775 35789999999999
Q ss_pred EEeCCCCc------------------eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe------e
Q 006808 143 EIDPLTGS------------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------S 196 (630)
Q Consensus 143 iwd~~~~~------------------~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~------~ 196 (630)
+|++.... .......+...+.+++|+|++ +|++|+ |+|++||+.+++++..+ .
T Consensus 150 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~ 228 (393)
T d1sq9a_ 150 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI 228 (393)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred EEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccc
Confidence 99975321 011112344568899999998 788887 89999999998876554 4
Q ss_pred cCCCCeEEEEEeeCCcEEEEEeeCCC---eEEEEEcCCCccccce--------eeee-ecCCceeeeeEEecCCccCCCC
Q 006808 197 GHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDGVKKQSAS--------CVLA-MEHPAVFMDCRCIDNGGVDDAG 264 (630)
Q Consensus 197 ~h~~~v~~l~~sp~~~~l~~~~~~d~---~i~vwd~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~ 264 (630)
+|..+|++++|+|+|++|++++ .|+ .|++||+.+++..... .... .+|. ..+.+++|+ |++
T Consensus 229 ~h~~~V~~l~~spdg~~l~sgs-~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~-~~V~~l~fs-----pd~ 301 (393)
T d1sq9a_ 229 NNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS-SWVMSLSFN-----DSG 301 (393)
T ss_dssp CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBS-SCEEEEEEC-----SSS
T ss_pred cccceEEEcccccccceeeeec-CCCCcceeeecccccceeeeeeccccccccceeeeeccc-CceeeeccC-----CCC
Confidence 7889999999999999999988 465 5999999987643100 0001 1233 345667777 999
Q ss_pred CEEEEEecCCcEEEEEcCCcccccccC
Q 006808 265 LYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 265 ~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
++|++|+.||+|+|||+.+++.+...+
T Consensus 302 ~~l~S~s~D~~v~vWd~~~g~~~~~l~ 328 (393)
T d1sq9a_ 302 ETLCSAGWDGKLRFWDVKTKERITTLN 328 (393)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CeeEEECCCCEEEEEECCCCCEEEEEC
Confidence 999999999999999999998776554
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.8e-24 Score=216.12 Aligned_cols=271 Identities=14% Similarity=0.145 Sum_probs=194.3
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+|+ .+|++|+.||+|++|+............... ........+.+.
T Consensus 53 ~~~V--~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~------ 107 (355)
T d1nexb2 53 DGGV--WALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNS----------------TVRCLDIVEYKN------ 107 (355)
T ss_dssp SSCE--EEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSS----------------CEEEEEEEEETT------
T ss_pred CCCE--EEEEEcCC-CEEEEEecccccccccccccccccccccccc----------------cccccccccccc------
Confidence 5688 55599986 5899999999999999998887765542211 111222222222
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEcc----------------------CCCCCCEEEEEEecCCCEEEEEeCCCc
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----------------------DCHPGGVSAISFATHGSCIYSAGADGM 140 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~----------------------~~h~~~v~~~~~s~~g~~l~s~~~dg~ 140 (630)
+..+++++.+|.|++|++.++....... ..|...+. .+.++++.++++..|+.
T Consensus 108 ---~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~ 182 (355)
T d1nexb2 108 ---IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNT 182 (355)
T ss_dssp ---EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSC
T ss_pred ---cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccce
Confidence 6679999999999999998765432211 12333333 34557889999999999
Q ss_pred EEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
|++||+.+++.+..+..+...+.++.|+|++.++++++ +.|++||+.++..+..+.+|...|.+++|+ +++|++++
T Consensus 183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~ 260 (355)
T d1nexb2 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA 260 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEEC
T ss_pred eeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeee
Confidence 99999999999999998889999999999999999987 899999999999999999999999999987 46888887
Q ss_pred eCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc-CceeEEe
Q 006808 219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT-KATKILS 297 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~ 297 (630)
.|+.|++||+.+.... +. .|......+.+++ +++.++++| .||.|+|||+++++.+... ......+
T Consensus 261 -~dg~i~iwd~~~~~~~-----~~-~~~~~~~~~~~~~-----~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V 327 (355)
T d1nexb2 261 -ADGSIRGWDANDYSRK-----FS-YHHTNLSAITTFY-----VSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQI 327 (355)
T ss_dssp -TTSEEEEEETTTCCEE-----EE-EECTTCCCCCEEE-----ECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEE
T ss_pred -ccccccccccccccee-----cc-cccCCceEEEEEc-----CCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCE
Confidence 6999999999876532 22 2344455556665 777777665 5899999999999877532 2222122
Q ss_pred eccCCCcccccchhhhhhhcccccccc
Q 006808 298 SSEDVNSKSQKSATAAIFAAKLQDIVK 324 (630)
Q Consensus 298 ~~~~~~~~~~~~~~~~i~~~~~d~~~~ 324 (630)
.+.. ++++ . .+++++.||.++
T Consensus 328 ~~v~-~~~~-~----~~~~~s~dg~~~ 348 (355)
T d1nexb2 328 WSVN-FKGK-T----LVAAVEKDGQSF 348 (355)
T ss_dssp EEEE-EETT-E----EEEEEESSSCEE
T ss_pred EEEE-EcCC-e----EEEEEECCCcEE
Confidence 2111 4443 1 566777776443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=9.5e-25 Score=212.50 Aligned_cols=265 Identities=12% Similarity=0.076 Sum_probs=191.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
.++| .+++|+| |++|+.||+|++||+.++. .+|.. .+.++.|.+
T Consensus 13 ~~~I--~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~------------------~V~~~~~~~------- 56 (287)
T d1pgua2 13 NKGI--TALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSN------------------LIVSLDNSK------- 56 (287)
T ss_dssp SSCE--EEEETTT----TEEEETTSCEEETTTTEEE-----CCCCS------------------CEEEEECCS-------
T ss_pred CCce--EEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCC------------------CEEEEEecC-------
Confidence 4688 4559988 9999999999999987542 22222 355565543
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCe
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI 162 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v 162 (630)
+..+++++.|++|++|++...+ +...+..+.+++++..++++ .++.+.+|+..+++.+..+..+ ..
T Consensus 57 ---~~~~~s~s~D~~v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~- 122 (287)
T d1pgua2 57 ---AQEYSSISWDDTLKVNGITKHE--------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SP- 122 (287)
T ss_dssp ---TTCCEEEETTTEEEETTEEEEE--------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SC-
T ss_pred ---CCeEEEEeeccccccccccccc--------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-ce-
Confidence 4457999999999999976432 23457888999888766665 5667899999999988887743 33
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
..+++|++..+++++ +.+++|++........+. .|..++++++|+|++.+|++++ .|+.|++||+.++...
T Consensus 123 -~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~--- 197 (287)
T d1pgua2 123 -GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVK--- 197 (287)
T ss_dssp -EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE---
T ss_pred -eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc-ccccccceeecccccc---
Confidence 346677777887776 589999998766555543 4778999999999999999988 6999999999887633
Q ss_pred eeeeecCCceeeeeEEecCC-----ccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 239 CVLAMEHPAVFMDCRCIDNG-----GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
......|.. .+.++.|++. .+.+++.+|++|+.||.|+|||+.++..+
T Consensus 198 ~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~-------------------------- 250 (287)
T d1pgua2 198 TSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-------------------------- 250 (287)
T ss_dssp ECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC--------------------------
T ss_pred ccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE--------------------------
Confidence 111122333 3444555421 11256789999999999999997543210
Q ss_pred hhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecccccee
Q 006808 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV 379 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~ 379 (630)
+..+.+|...|.+++|+|++. | +|++.|+++++|++
T Consensus 251 ----------------------------~~~~~~h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW~i 286 (287)
T d1pgua2 251 ----------------------------IKALNAHKDGVNNLLWETPST-L-VSSGADACIKRWNV 286 (287)
T ss_dssp ----------------------------EEETTSSTTCEEEEEEEETTE-E-EEEETTSCEEEEEE
T ss_pred ----------------------------EEEeCCCCCCeEEEEECCCCE-E-EEEECCCeEEEEEE
Confidence 112226888999999999986 5 78888999999986
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.9e-23 Score=205.09 Aligned_cols=259 Identities=15% Similarity=0.193 Sum_probs=185.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM 165 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l 165 (630)
+++|++|+.||.|+|||+.+++++..+ .+|...|.+++|+|+ +|++|+.|+.+++|+............+...+...
T Consensus 27 g~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (342)
T d2ovrb2 27 GNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 103 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeee
Confidence 678999999999999999999988666 589999999999874 89999999999999999888777777666666666
Q ss_pred EEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 166 ~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
...+. .+..+. +.+.+|+..+++....+..+..... .+.+....+++++ .|+.|++|+....... ..+
T Consensus 104 ~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~d~~i~~~d~~~~~~~-----~~~ 173 (342)
T d2ovrb2 104 HLHEK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGA-YDFMVKVWDPETETCL-----HTL 173 (342)
T ss_dssp EEETT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEE-TTSCEEEEEGGGTEEE-----EEE
T ss_pred ecccc--cccccccceeEEEeecccccceeeeecccccce--eeccccceeeeec-CCCeEEEeecccceee-----EEE
Confidence 55543 333333 8999999999988777765544433 3445566777777 6999999999876532 233
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV 323 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~ 323 (630)
..+... ...+. +++.++++++.||.|++||+..++.+.........+.+ +.+.++ ++++++.|+.+
T Consensus 174 ~~~~~~--~~~~~-----~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~---~~~~~~----~l~s~s~d~~i 239 (342)
T d2ovrb2 174 QGHTNR--VYSLQ-----FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG---MELKDN----ILVSGNADSTV 239 (342)
T ss_dssp CCCSSC--EEEEE-----ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE---EEEETT----EEEEEETTSCE
T ss_pred cCcccc--ccccc-----CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeE---EecCCC----EEEEEcCCCEE
Confidence 222222 22233 57899999999999999999998876654443322221 233333 88999998876
Q ss_pred cCCceeEEEEEcCccCceeeEEe---ccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 324 KPASVHTFVAYGLLLKPSFQKIL---VNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 324 ~~~~~~~~~~~g~~~~~~~~~~~---~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
++++. ........+. .|...+.++.++ +.++ ++|+.|+++++|++.++
T Consensus 240 ~iwd~--------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~s~s~Dg~i~iwd~~tg 290 (342)
T d2ovrb2 240 KIWDI--------KTGQCLQTLQGPNKHQSAVTCLQFN--KNFV-ITSSDDGTVKLWDLKTG 290 (342)
T ss_dssp EEEET--------TTCCEEEEECSTTSCSSCEEEEEEC--SSEE-EEEETTSEEEEEETTTC
T ss_pred EEEec--------ccccccccccccceeeeceeecccC--CCee-EEEcCCCEEEEEECCCC
Confidence 66431 1222223333 355566666554 5677 89999999999998654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.1e-23 Score=210.67 Aligned_cols=205 Identities=15% Similarity=0.149 Sum_probs=150.2
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
+.++++++.||.|++|++........+..+....... ......+..+.|.+..... .+.++++++.+|
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dg 146 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS--------DMKKHSFWALKWGASNDRL----LSHRLVATDVKG 146 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCT--------TGGGSCEEEEEEECCC--------CEEEEEEETTS
T ss_pred CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeee--------ccCCCceEEEEEecCCCcc----cccEEEEEcCCC
Confidence 4578899999999999876543322221111111000 0111234455665543211 156889999999
Q ss_pred eEEEEEccCCee-----------------eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee---
Q 006808 97 DVLALAVSAGQL-----------------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--- 156 (630)
Q Consensus 97 ~v~iwd~~~~~~-----------------~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~--- 156 (630)
.+.+|++..... .......+...+.+++|+|++ +|++|+.||+|++||+.+++++..+.
T Consensus 147 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~ 225 (393)
T d1sq9a_ 147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH 225 (393)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred cEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc
Confidence 999999853210 111123455678999999987 89999999999999999998876544
Q ss_pred ---cCCCCeEEEEEccCCCEEEEeC--C---eEEEEECCCCceeeEee-------------cCCCCeEEEEEeeCCcEEE
Q 006808 157 ---ASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDHKKMQKFS-------------GHPGAVRFMTFSDNGKYVL 215 (630)
Q Consensus 157 ---~~~~~v~~l~~~p~~~~l~~~~--g---~i~lwd~~~~~~~~~~~-------------~h~~~v~~l~~sp~~~~l~ 215 (630)
+|..+|.+++|+|+|++|++|+ + .|++||+.+++.+..+. +|...|++++|+|++++|+
T Consensus 226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~ 305 (393)
T d1sq9a_ 226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305 (393)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence 5788999999999999999997 3 59999999998777663 7999999999999999999
Q ss_pred EEeeCCCeEEEEEcCCCccc
Q 006808 216 SSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 216 ~~~~~d~~i~vwd~~~~~~~ 235 (630)
+++ .|++|++||+.+++..
T Consensus 306 S~s-~D~~v~vWd~~~g~~~ 324 (393)
T d1sq9a_ 306 SAG-WDGKLRFWDVKTKERI 324 (393)
T ss_dssp EEE-TTSEEEEEETTTTEEE
T ss_pred EEC-CCCEEEEEECCCCCEE
Confidence 988 6999999999998643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.1e-22 Score=201.60 Aligned_cols=259 Identities=10% Similarity=0.025 Sum_probs=181.1
Q ss_pred ceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEE--ccCCCCCCEEEEEEecCC-CEEEEEeCCCcEEE
Q 006808 67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR--LSDCHPGGVSAISFATHG-SCIYSAGADGMVCE 143 (630)
Q Consensus 67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~--~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~v~i 143 (630)
.+++++|.|. +.+|++|+.||+|+|||+.++..... ...+|..+|.+++|+|++ .+|++|+.||.|++
T Consensus 13 ~I~~l~fsp~---------~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~ 83 (342)
T d1yfqa_ 13 YISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred CEEEEEEeCC---------CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence 4666777654 77899999999999999976643222 223699999999999865 57899999999999
Q ss_pred EeCCCCceeEEeecCCC-CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEe----ecC--CCCeEEEEEeeCCcEE
Q 006808 144 IDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF----SGH--PGAVRFMTFSDNGKYV 214 (630)
Q Consensus 144 wd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~----~~h--~~~v~~l~~sp~~~~l 214 (630)
|++..+........+.. ......+.++...+++++ +.+++||++++...... ..+ ........+.+.+..+
T Consensus 84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence 99998877776665554 344555666777777776 89999998765433222 222 2344566778888888
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
++++ .|+.|++|++........ ................++ .++..+++++.||.+.+|+..............
T Consensus 164 ~~~~-~d~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~ 236 (342)
T d1yfqa_ 164 IVGM-NNSQVQWFRLPLCEDDNG-TIEESGLKYQIRDVALLP-----KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp EEEE-STTEEEEEESSCCTTCCC-EEEECSCSSCEEEEEECS-----GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred eeec-CCCcEEEEecccCcccce-eeeecccccceeeeEeec-----CCCCEEEeecCCCeEEEEEecCCcceeeccccc
Confidence 8887 699999999987764411 122223333344445554 678899999999999999986554332221111
Q ss_pred EEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecc
Q 006808 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (630)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (630)
.... .........|...|.+++|+|++.+| +||+.|+.+
T Consensus 237 ~~~~----------------------------------------~~~~~~~~~~~~~v~~l~~sp~~~~l-asg~~Dg~v 275 (342)
T d1yfqa_ 237 AFRC----------------------------------------HRLNLKDTNLAYPVNSIEFSPRHKFL-YTAGSDGII 275 (342)
T ss_dssp EEEC----------------------------------------CCCCTTCCSSCCCEEEEEECTTTCCE-EEEETTSCE
T ss_pred eeee----------------------------------------eeeccCCCcccccceeEEecCCccEE-EEECCCCEE
Confidence 1100 00000112567789999999999999 999999999
Q ss_pred ccceeccc
Q 006808 375 RGRYVQNR 382 (630)
Q Consensus 375 ~~w~~~~~ 382 (630)
++|++.++
T Consensus 276 ~vWD~~~~ 283 (342)
T d1yfqa_ 276 SCWNLQTR 283 (342)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 99999764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=1.2e-19 Score=176.60 Aligned_cols=263 Identities=12% Similarity=0.091 Sum_probs=193.9
Q ss_pred EEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE-EEEeCCCeEE
Q 006808 21 AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGGDVL 99 (630)
Q Consensus 21 as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g~v~ 99 (630)
++++.|++|.|||+.+++.+.++.... .+. .++|.|. +++| +++..++.|.
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~------------------~va~spd---------G~~l~v~~~~~~~i~ 57 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGS-NPM------------------GAVISPD---------GTKVYVANAHSNDVS 57 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSS-SEE------------------EEEECTT---------SSEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCC-Cce------------------EEEEeCC---------CCEEEEEECCCCEEE
Confidence 456679999999999999998886321 122 3444433 5655 5666789999
Q ss_pred EEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC
Q 006808 100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 100 iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~ 178 (630)
+||+.+++.+..+. .| ..+..++|++++..++ ++..++.+.+|+..+++....+..+ ....++.|+|++..++.++
T Consensus 58 v~d~~t~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~ 134 (301)
T d1l0qa2 58 IIDTATNNVIATVP-AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTN 134 (301)
T ss_dssp EEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE
T ss_pred EEECCCCceeeeee-cc-ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeee
Confidence 99999999887764 33 4578999999998755 5557789999999999988888754 4678899999999887655
Q ss_pred ---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEe
Q 006808 179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 179 ---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (630)
+.+.+|+..++..+..+..+ ..+..+.++|++.++++++...+.+.+|+....... ......... ....+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~ 207 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEAAP-SGIAV 207 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSSEE-EEEEE
T ss_pred ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeee-----ecccccCCc-ceeec
Confidence 68999999999888877744 457889999999999888866678888887776532 222233333 33444
Q ss_pred cCCccCCCCCEEEEEec---CCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEE
Q 006808 256 DNGGVDDAGLYVLAISE---TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV 332 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 332 (630)
. +++..++.++. ++.|++||..+++.+....
T Consensus 208 ~-----~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~----------------------------------------- 241 (301)
T d1l0qa2 208 N-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----------------------------------------- 241 (301)
T ss_dssp C-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred c-----ccccccccccccceeeeeeeeecCCCeEEEEEc-----------------------------------------
Confidence 4 78888776644 4679999987765432110
Q ss_pred EEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceeccc
Q 006808 333 AYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR 382 (630)
Q Consensus 333 ~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~ 382 (630)
+...+..++|||||++|.++++.|+++++|++++.
T Consensus 242 ---------------~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 242 ---------------VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp ---------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ---------------CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 11235789999999987578888999999998654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1.3e-20 Score=193.86 Aligned_cols=308 Identities=13% Similarity=0.070 Sum_probs=209.9
Q ss_pred EeEECCCCCEEEEeeCCCcEEEEECCCCcE--EEEec---ccccccccccccccccccccccceeeEEeccccccccccc
Q 006808 10 LTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL 84 (630)
Q Consensus 10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~--~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 84 (630)
.++|||||+++++++.||+|++||+.+++. ..++. ++.+.+.+..|+|+
T Consensus 66 ~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD-------------------------- 119 (432)
T d1qksa2 66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE-------------------------- 119 (432)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT--------------------------
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC--------------------------
Confidence 449999999999999999999999988764 33332 22222333333333
Q ss_pred CCcE-EEEEeCCCeEEEEEccCCeeeEEccC----------CCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCcee
Q 006808 85 GSSL-LVLGTGGGDVLALAVSAGQLKWRLSD----------CHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLL 152 (630)
Q Consensus 85 ~~~~-l~~~~~~g~v~iwd~~~~~~~~~~~~----------~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~~~~~~~ 152 (630)
+++ ++++..++.|.+||..+++.+..+.. .+......+.++|+|..+ ++...++.|.+||..+++..
T Consensus 120 -G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~ 198 (432)
T d1qksa2 120 -DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL 198 (432)
T ss_dssp -TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred -CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence 555 47788899999999999987654421 244567889999999875 55667899999999888765
Q ss_pred EEee-cCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeec-----CCCCeEEEEEeeCCcEEEEEeeCCCe
Q 006808 153 GKFR-ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-----HPGAVRFMTFSDNGKYVLSSAVGERY 223 (630)
Q Consensus 153 ~~~~-~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~l~~~~~~d~~ 223 (630)
.... .+...+..++|+|+|+++++++ +.+.++|..+++.+..+.. |........+...+....+....++.
T Consensus 199 ~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~ 278 (432)
T d1qksa2 199 KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278 (432)
T ss_dssp EEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred eEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCce
Confidence 5433 2455789999999999888877 6999999999887766542 33344445555555566666556889
Q ss_pred EEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCC
Q 006808 224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN 303 (630)
Q Consensus 224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 303 (630)
|.+|........ .+...+. ...+. |++..+++++.++..++|...+...-... ...+ .
T Consensus 279 v~~~~~~~~~~~--------~~~~~v~-~~~~~-----~~g~~~~~~s~p~~~~lw~~~~~~~~~~~---~~sv-----~ 336 (432)
T d1qksa2 279 VALIGTDPEGHP--------DNAWKIL-DSFPA-----LGGGSLFIKTHPNSQYLYVDATLNPEAEI---SGSV-----A 336 (432)
T ss_dssp EEEEECCTTTCT--------TTBTSEE-EEEEC-----SCSCCCCEECCTTCSEEEEECTTCSSHHH---HTCE-----E
T ss_pred EEeccccccccc--------ccccEEE-EEEEc-----CCCCeEEEEecCCccceeecccCCCCCCe---eeEE-----E
Confidence 999987654321 2222233 33444 88899999999999999987654331111 1111 1
Q ss_pred cccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccc----cceecccccee
Q 006808 304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ----SLLKSKRGRYV 379 (630)
Q Consensus 304 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~----s~d~~~~~w~~ 379 (630)
.++++ .+++++.|+.+++++. +. -..+..|...|.+++|||||+++.+|. ..++.+++|+.
T Consensus 337 vpDg~----~la~~s~d~~~k~w~~------~~-----~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~ 401 (432)
T d1qksa2 337 VFDIK----AMTGDGSDPEFKTLPI------AE-----WAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 401 (432)
T ss_dssp EEEGG----GCCCSSSCCCEEEECH------HH-----HHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred EEech----hhcccccCCceEeccc------cc-----ccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence 25565 8888888876665431 00 012335777899999999999884553 24677888886
Q ss_pred cc
Q 006808 380 QN 381 (630)
Q Consensus 380 ~~ 381 (630)
+.
T Consensus 402 ~T 403 (432)
T d1qksa2 402 KT 403 (432)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=6.2e-21 Score=196.53 Aligned_cols=321 Identities=7% Similarity=-0.037 Sum_probs=204.8
Q ss_pred EECCCCC--EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALD--YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~--~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++.|.+ ++++.+.||+|+|||+.+++++.++..+. .+..+.|+|+ ++++
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPD---------------------------Gk~l 76 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSAS---------------------------GRYL 76 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTT---------------------------SCEE
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC---------------------------CCEE
Confidence 4555543 55777889999999999999999998653 3555666665 8889
Q ss_pred EEEeCCCeEEEEEccCCeeeE--Ec--cCCCCCCEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCceeEEeecCC-----
Q 006808 90 VLGTGGGDVLALAVSAGQLKW--RL--SDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRAST----- 159 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~--~~--~~~h~~~v~~~~~s~~g~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~----- 159 (630)
++++.||.|++||+.+++... .+ ..+|...+.+++|+|||+++++ +..++.+++||..++.+...+..+.
T Consensus 77 ~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 156 (426)
T d1hzua2 77 LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 156 (426)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred EEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc
Confidence 999999999999999887432 22 2345566778888899998755 4588999999999998887766543
Q ss_pred ------CCeEEEEEccCCCEEEEeC---CeEEEEECCCCcee-eEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEc
Q 006808 160 ------KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM-QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229 (630)
Q Consensus 160 ------~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~-~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~ 229 (630)
.....+.+++++..++... +.+.+++...+... ....++...+..+.|+|++++++++...+..+.+|+.
T Consensus 157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~ 236 (426)
T d1hzua2 157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS 236 (426)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence 2345667777777666654 56777776665432 2334577789999999999999998877888999999
Q ss_pred CCCccccceeeeeecCCce-eeeeEEecCCccCCCCCEEEE--EecCCcEEEEEcCCcc-------ccc---ccCceeEE
Q 006808 230 DGVKKQSASCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNIE-------ELR---NTKATKIL 296 (630)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s--~s~dg~i~iwd~~~~~-------~~~---~~~~~~~~ 296 (630)
.+++.. .......... ........ +....+.+ .+.|+.+.+|+..... ... .+......
T Consensus 237 ~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~ 308 (426)
T d1hzua2 237 KDRRLS---ALVDVGKTPHPGRGANFVH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLF 308 (426)
T ss_dssp TTTEEE---EEEECSSCCCCSCCEEEEE-----TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCC
T ss_pred ccccEE---EEeccCCcccccceeeeec-----CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeE
Confidence 988744 1222221111 11111121 22223322 2347778888754432 111 11111122
Q ss_pred eeccCCCcccccchhhhhhh-------ccccccccCCceeEEEEE-cCccCcee-----eEEeccCCCcEEEeecCCcce
Q 006808 297 SSSEDVNSKSQKSATAAIFA-------AKLQDIVKPASVHTFVAY-GLLLKPSF-----QKILVNSGEDINLNCSQDGVL 363 (630)
Q Consensus 297 ~~~~~~~~~~~~~~~~~i~~-------~~~d~~~~~~~~~~~~~~-g~~~~~~~-----~~~~~h~~~v~~~~~s~dg~~ 363 (630)
+ .|+|+++ ++++ ++.++.+++++ .. +....... ..+..|...|..++|||||++
T Consensus 309 v----~~sPdg~----~l~v~~~~~~s~~~~~tv~vwd-----~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~ 375 (426)
T d1hzua2 309 I----KTHPKSS----HLYVDTTFNPDARISQSVAVFD-----LKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 375 (426)
T ss_dssp E----ECCTTCS----EEEECCTTCSSHHHHTCEEEEE-----TTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred E----EcCCCCc----eEEEeecCCCCcccCCEEEEEE-----CCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence 2 2788877 5653 33333333322 11 11111000 012245667999999999997
Q ss_pred eecc----ccceeccccceecc
Q 006808 364 LPMS----QSLLKSKRGRYVQN 381 (630)
Q Consensus 364 l~~s----~s~d~~~~~w~~~~ 381 (630)
+.+| ++.++.+++|+.+.
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T 397 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKT 397 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTT
T ss_pred EEEEEecCCCCCCeEEEEECCC
Confidence 6454 35688899999764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=2.3e-20 Score=181.06 Aligned_cols=225 Identities=11% Similarity=0.098 Sum_probs=163.2
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
++.| .+++|++++ .+++++.|++|++|+..+.+. . ....++.+.+
T Consensus 46 ~~~V--~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~----~---------------------~~~~~~~~~~------- 90 (287)
T d1pgua2 46 SNLI--VSLDNSKAQ-EYSSISWDDTLKVNGITKHEF----G---------------------SQPKVASANN------- 90 (287)
T ss_dssp CSCE--EEEECCSTT-CCEEEETTTEEEETTEEEEEC----S---------------------SCEEEEEECS-------
T ss_pred CCCE--EEEEecCCC-eEEEEeecccccccccccccc----c---------------------cceeeeeecc-------
Confidence 3467 555888765 678999999999998753221 0 1122333332
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCceeEEee-cCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFR-ASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~v~iwd~~~~~~~~~~~-~~~~ 160 (630)
...+++.+.++.+.+|+..+++.+..+. +...+ .++++++..+++++.++ .+++|++...+....+. .+..
T Consensus 91 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 163 (287)
T d1pgua2 91 ---DGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163 (287)
T ss_dssp ---SSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred ---CCceEEEeecccceeeeccceeeeeecc--cccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC
Confidence 3345666777789999999988876653 33344 45667788888777765 79999998766655544 3667
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceee-EeecCCCCeEEEEEeeCC----------cEEEEEeeCCCeEEEE
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNG----------KYVLSSAVGERYIALW 227 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~-~~~~h~~~v~~l~~sp~~----------~~l~~~~~~d~~i~vw 227 (630)
.+++++|+|++.+|++++ |.|++||+.++.... .+.+|..+|.+++|+|.+ .+|++++ .|++|++|
T Consensus 164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs-~D~~i~iw 242 (287)
T d1pgua2 164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS-LDTNIFIY 242 (287)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE-TTSCEEEE
T ss_pred ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec-CCCeEEEE
Confidence 899999999999999997 899999999987654 467899999999998754 5788777 69999999
Q ss_pred EcCCCccccceeeeee-cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEc
Q 006808 228 RTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281 (630)
Q Consensus 228 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 281 (630)
++..+... .... .|...+ ..+.|. |++ .|++++.||.|++|++
T Consensus 243 ~~~~~~~~----~~~~~~h~~~V-~~v~~~-----~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 243 SVKRPMKI----IKALNAHKDGV-NNLLWE-----TPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ESSCTTCC----EEETTSSTTCE-EEEEEE-----ETT-EEEEEETTSCEEEEEE
T ss_pred ECCCCCeE----EEEeCCCCCCe-EEEEEC-----CCC-EEEEEECCCeEEEEEE
Confidence 99775432 2233 455555 445555 665 6889999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1.5e-20 Score=193.35 Aligned_cols=301 Identities=8% Similarity=-0.051 Sum_probs=203.5
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
++++.+.||+|.|||..+++++..+..+. .+..+.|+|+ ++++++++.+|.|
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpD---------------------------G~~l~~~s~dg~v 85 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVIGRDGKV 85 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEEETTSEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC---------------------------CCEEEEEcCCCCE
Confidence 45788899999999999999999997653 4556666666 8899999999999
Q ss_pred EEEEccCCee--eEEcc--CCCCCCEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCceeEEeecC-----------CCCe
Q 006808 99 LALAVSAGQL--KWRLS--DCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRAS-----------TKGI 162 (630)
Q Consensus 99 ~iwd~~~~~~--~~~~~--~~h~~~v~~~~~s~~g~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~v 162 (630)
.+||+.+++. ...+. .+|.+.+.+..|+|||+++ ++++.+++|++||..+++++..+..+ ....
T Consensus 86 ~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (432)
T d1qksa2 86 NMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 165 (432)
T ss_dssp EEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred EEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCce
Confidence 9999988763 22222 3455566777788899986 67788999999999999998877643 3456
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
..+.++|+|..++++. +.|.+|+..+++...... .+...+..++|+|+|+++++++..++.+.+++..+.+..
T Consensus 166 ~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~--- 242 (432)
T d1qksa2 166 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV--- 242 (432)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE---
T ss_pred eEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE---
Confidence 6789999998776553 899999998877544332 345678899999999999998877789999999887643
Q ss_pred eeeeec----CCceeeeeEEecCCccCCCCCEEEEEe-cCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhh
Q 006808 239 CVLAME----HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA 313 (630)
Q Consensus 239 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (630)
...... +..... ....+ ..+...++.. .++.+.+|+..+..... +.-...... +++++. .
T Consensus 243 ~~~~~g~~~~~~~~~~-~~~~~-----~~g~~~~~~~lg~~~v~~~~~~~~~~~~-~~~~v~~~~----~~~~g~----~ 307 (432)
T d1qksa2 243 AIEDTGGQTPHPGRGA-NFVHP-----TFGPVWATSHMGDDSVALIGTDPEGHPD-NAWKILDSF----PALGGG----S 307 (432)
T ss_dssp EEEECSSSSBCCTTCE-EEEET-----TTEEEEEEEBSSSSEEEEEECCTTTCTT-TBTSEEEEE----ECSCSC----C
T ss_pred EEeccCccccccCccc-ceecC-----CCCceecccccCCceEEecccccccccc-cccEEEEEE----EcCCCC----e
Confidence 111111 111111 12222 2333444433 37889999876543321 111111111 345544 5
Q ss_pred hhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceecc
Q 006808 314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 314 i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
+++++.++..++ |... .+..|.....++++ ||++.| ++++.|+.+++|++..
T Consensus 308 ~~~~s~p~~~~l-----w~~~---------~~~~~~~~~~sv~v-pDg~~l-a~~s~d~~~k~w~~~~ 359 (432)
T d1qksa2 308 LFIKTHPNSQYL-----YVDA---------TLNPEAEISGSVAV-FDIKAM-TGDGSDPEFKTLPIAE 359 (432)
T ss_dssp CCEECCTTCSEE-----EEEC---------TTCSSHHHHTCEEE-EEGGGC-CCSSSCCCEEEECHHH
T ss_pred EEEEecCCccce-----eecc---------cCCCCCCeeeEEEE-Eechhh-cccccCCceEeccccc
Confidence 666666553332 2211 11133333445554 999999 9999999999998754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.1e-19 Score=175.50 Aligned_cols=231 Identities=13% Similarity=0.258 Sum_probs=172.9
Q ss_pred CcccceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
+++| .+++| ++++|++|+.||.|++|++..+............ ...+...
T Consensus 55 ~~~V--~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~------ 104 (293)
T d1p22a2 55 TGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--------------------VLHLRFN------ 104 (293)
T ss_dssp SSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--------------------EEEEECC------
T ss_pred CCCE--eeeec--ccceeecccccccccccccccccccccccccccc--------------------ccccccc------
Confidence 4567 54455 7789999999999999999988877655422110 1111111
Q ss_pred ccCCcEEEEEeCCCeEEEEEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC
Q 006808 83 KLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160 (630)
Q Consensus 83 ~~~~~~l~~~~~~g~v~iwd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 160 (630)
...++++..++.+.+|+...... .......|...|..+.+.+ ..+++++.|+.|++||+.+++.+..+.++..
T Consensus 105 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~ 179 (293)
T d1p22a2 105 ---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKR 179 (293)
T ss_dssp ---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred ---ccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEccccc
Confidence 55689999999999999987653 2233356888898888764 4788999999999999999999999999988
Q ss_pred CeEEEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc---
Q 006808 161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--- 235 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~--- 235 (630)
.+..+.++ +.++++++ |.|++||+++.+.+..+.+|...+.. +++++.+|++++ .|+.|++||+......
T Consensus 180 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~ 254 (293)
T d1p22a2 180 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGA-YDGKIKVWDLVAALDPRAP 254 (293)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEE-TTSCEEEEEHHHHTSTTSC
T ss_pred ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEc-CCCEEEEEECCCCcccccc
Confidence 88888776 45777776 89999999999999999989888865 566788898887 6999999998653321
Q ss_pred -cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 236 -SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 236 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
...+...+..+...+..+.| ++.+|++|+.||.|+|||
T Consensus 255 ~~~~~~~~~~~H~~~V~~v~~-------d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 255 AGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC
T ss_pred CCceeeEEecCCCCCEEEEEE-------cCCEEEEEecCCEEEEeC
Confidence 11223333333333444444 467899999999999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=1.8e-20 Score=187.61 Aligned_cols=271 Identities=11% Similarity=0.029 Sum_probs=183.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
++++++++ .|.|++||+.++... .+ +|...|.+++|+|||++|++++.+. .|++||+.+++.. .+..|...+.
T Consensus 15 G~~~a~~~-~g~v~v~d~~~~~~~-~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~ 89 (360)
T d1k32a3 15 GDLIAFVS-RGQAFIQDVSGTYVL-KV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVF 89 (360)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEE-EC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEE
T ss_pred CCEEEEEE-CCeEEEEECCCCcEE-Ec--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEE
Confidence 66677765 579999999988775 33 6999999999999999988776553 7999999887654 5667889999
Q ss_pred EEEEccCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee---------CCCeEEEEEcCCC
Q 006808 164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGV 232 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~---------~d~~i~vwd~~~~ 232 (630)
+++|+|+|++|++++ +.+++|++.+++....+..|...+.+++|+|+|++|+.+.. .++.+++|++.++
T Consensus 90 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~ 169 (360)
T d1k32a3 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 169 (360)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred eeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence 999999999999988 79999999999998889999999999999999999987542 2446899999887
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCceeEEee--c----cCCCccc
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS--S----EDVNSKS 306 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~----~~~~~~~ 306 (630)
+.. ....+.. ......++ |+|++|++++.++.+.+|+................+. . ...++++
T Consensus 170 ~~~-----~~~~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 170 KIF-----AATTENS-HDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp EEE-----ECSCSSS-BEEEEEEC-----TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred cee-----eeccccc-cccccccc-----CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence 533 1222333 33445565 9999999999999999999766543322111111111 0 0112232
Q ss_pred ccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCC---cceeeccccceeccccceecc
Q 006808 307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD---GVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 307 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d---g~~l~~s~s~d~~~~~w~~~~ 381 (630)
+. .+.++..+.... ..+++.. .........+..+.+.+..+.+.+. +.++ ++++.++.+++|+++.
T Consensus 239 ~~----~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~d~~~ 307 (360)
T d1k32a3 239 SM----TSEAGEYDLNDM--YKRSSPI--NVDPGDYRMIIPLESSILIYSVPVHGEFAAYY-QGAPEKGVLLKYDVKT 307 (360)
T ss_dssp GG----SCCCCCCCCTTG--GGGCEEC--SCCCBCEEEEEECSSEEEEEECCCCCSHHHHH-HCCCCCEEEEEEETTT
T ss_pred cC----cccccceeeccc--ccceeec--ccCcCceeEeeecCCCceEEEEEecCCCeeEE-EecCCCCEEEEEECCC
Confidence 22 222222111000 0011111 0111122334455555555555544 4566 8899999999999864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=5.4e-20 Score=182.16 Aligned_cols=266 Identities=12% Similarity=0.046 Sum_probs=186.1
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccc--cccccccccccccccccccceeeEEecccccccccccCCcEE-EEEeC
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIA--STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG 94 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~ 94 (630)
+||++++.|++|+|||+.+++++.++..+. ..+..+.|+|+ ++++ ++++.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD---------------------------g~~l~v~~~~ 54 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG---------------------------GRIAYATVNK 54 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT---------------------------SSEEEEEETT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC---------------------------CCEEEEEECC
Confidence 589999999999999999999998886432 22333444443 6655 56677
Q ss_pred CCeEEEEEccCCeeeEEccCC----CCCCEEEEEEecCCCEEEEEe------------CCCcEEEEeCCCCceeEEeecC
Q 006808 95 GGDVLALAVSAGQLKWRLSDC----HPGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRAS 158 (630)
Q Consensus 95 ~g~v~iwd~~~~~~~~~~~~~----h~~~v~~~~~s~~g~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~ 158 (630)
++.|.+||+.+++.+..+... +...+..++|+|+++++++++ .+..+.+||..+++....+..
T Consensus 55 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~- 133 (337)
T d1pbyb_ 55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-
Confidence 899999999999987665421 122345789999999988775 357899999999999888875
Q ss_pred CCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEE------------------------
Q 006808 159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYV------------------------ 214 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l------------------------ 214 (630)
...+.+++|+|+|++++++++.+.+||..+++....+..+... ....++|++..+
T Consensus 134 ~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T d1pbyb_ 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence 4567899999999999999988999999999887776543221 111122222111
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCcee
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK 294 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 294 (630)
...+ .++.+.+|+...+... ...............+. |++.+++++ ++.|++||+.+++.+...
T Consensus 213 ~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~i~v~d~~~~~~~~~~---- 276 (337)
T d1pbyb_ 213 DPTA-YRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRV---- 276 (337)
T ss_dssp SGGG-EEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEE----
T ss_pred eecc-cCccEEEEEcCCCcEE----EEEecCCCcceEEEEec-----ccceEEEEc--cccEEEEECCCCcEEEEE----
Confidence 1111 2446888888776533 11222233334444555 888887765 478999999877553321
Q ss_pred EEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceecc
Q 006808 295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK 374 (630)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~ 374 (630)
.+...+.+++|+|||++| ++++.|+++
T Consensus 277 ----------------------------------------------------~~~~~~~~~~~s~dG~~l-~v~~~~~~i 303 (337)
T d1pbyb_ 277 ----------------------------------------------------PLPHSYYSVNVSTDGSTV-WLGGALGDL 303 (337)
T ss_dssp ----------------------------------------------------ECSSCCCEEEECTTSCEE-EEESBSSEE
T ss_pred ----------------------------------------------------cCCCCEEEEEECCCCCEE-EEEeCCCcE
Confidence 112246789999999999 888899999
Q ss_pred ccceecc
Q 006808 375 RGRYVQN 381 (630)
Q Consensus 375 ~~w~~~~ 381 (630)
++|+.++
T Consensus 304 ~v~D~~t 310 (337)
T d1pbyb_ 304 AAYDAET 310 (337)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999864
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.83 E-value=4.9e-18 Score=165.10 Aligned_cols=239 Identities=12% Similarity=0.085 Sum_probs=180.2
Q ss_pred EeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|+|||++|+ +++.++.|++||+.+++.+..+..+.. ...+.|.+.. ..+
T Consensus 36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-------------------~~~~~~~~~~--------~~~ 88 (301)
T d1l0qa2 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-------------------PQGVAVSPDG--------KQV 88 (301)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-------------------EEEEEECTTS--------SEE
T ss_pred EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-------------------cccccccccc--------ccc
Confidence 459999999875 566789999999999999888764321 2344454432 334
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEE
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~ 167 (630)
++++..++.+.+|+..+++....+. +...+.++.|+|+|..++ ++..++.+.+|+..+++.+..+..+ ..+.++++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 165 (301)
T d1l0qa2 89 YVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAV 165 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred cccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEe
Confidence 5556667789999999998876653 556789999999999865 5556888999999999988888754 45789999
Q ss_pred ccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee--CCCeEEEEEcCCCccccceeeee
Q 006808 168 SSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLA 242 (630)
Q Consensus 168 ~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~~~ 242 (630)
+|++..+++++ +.+.+|+.........+.. ...+..++|++++..+++++. .++.|++||+.+++.. ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~-----~~ 239 (301)
T d1l0qa2 166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----AR 239 (301)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----EE
T ss_pred eccccceeeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEE-----EE
Confidence 99999888776 6788888887777666654 455678999999998877653 2468999999987643 22
Q ss_pred ecCCceeeeeEEecCCccCCCCCEE-EEEecCCcEEEEEcCCccccccc
Q 006808 243 MEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
+..... ...++|+ |||++| ++++.++.|++||+.+++.+.+.
T Consensus 240 ~~~~~~-~~~va~s-----pdg~~l~va~~~~~~i~v~D~~t~~~~~~~ 282 (301)
T d1l0qa2 240 IPVGPD-PAGIAVT-----PDGKKVYVALSFCNTVSVIDTATNTITATM 282 (301)
T ss_dssp EECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCC-EEEEEEe-----CCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 333332 3456676 999987 56677999999999999877654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.83 E-value=2.2e-19 Score=184.81 Aligned_cols=277 Identities=9% Similarity=0.015 Sum_probs=178.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE--ee---cCCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FR---ASTK 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~--~~---~~~~ 160 (630)
.-++++++.+|+|+|||+.+++.+.++.. | ..+.+++|+|||+++++++.|++|++||+.+++.... +. .|..
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~-g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~ 109 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKIVKVIDT-G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS 109 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSEEEEEEC-C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred eEEEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence 34567788899999999999999988753 4 4699999999999999999999999999999875443 33 3344
Q ss_pred CeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCC-----------eEEEEEeeCCcEEEEEeeCCCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGA-----------VRFMTFSDNGKYVLSSAVGERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~-----------v~~l~~sp~~~~l~~~~~~d~~i~v 226 (630)
.+.+++|+|||+++++++ +.+.+||..++.++..+.+|... ...+.+++++..++......+.+.+
T Consensus 110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~ 189 (426)
T d1hzua2 110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 189 (426)
T ss_dssp EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 556677789999987765 79999999999888777665443 3445556666665555544455555
Q ss_pred EEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCcccccccCceeEEeec-cCCCc
Q 006808 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKILSSS-EDVNS 304 (630)
Q Consensus 227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~ 304 (630)
++....... ......+... .....+. |++++++++.. +..+.+|+..+++.+............ ...+.
T Consensus 190 ~~~~~~~~~---~~~~~~~~~~-~~~~~~~-----~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (426)
T d1hzua2 190 VNYKDIDNL---TVTSIGAAPF-LADGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV 260 (426)
T ss_dssp EECSSSSSC---EEEEEECCSS-EEEEEEC-----TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEE
T ss_pred EEeccccce---eeEEeccCCc-cEeeeEC-----CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeee
Confidence 555544322 1222233332 3334555 88988877765 567899999888765433221100000 00000
Q ss_pred ccccchhhhhhhccccccccCCceeEEEEEcC------ccCceeeEEeccCCCcEEEeecCCcceeec------ccccee
Q 006808 305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGL------LLKPSFQKILVNSGEDINLNCSQDGVLLPM------SQSLLK 372 (630)
Q Consensus 305 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~------s~s~d~ 372 (630)
..... .+.+.... .++.+...... .......++.+|...+..++|||||++|++ +++.|+
T Consensus 261 ~~~~~---~~~~~~~~-----~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~ 332 (426)
T d1hzua2 261 HPKYG---PVWSTSHL-----GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 332 (426)
T ss_dssp ETTTE---EEEEEECT-----TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHT
T ss_pred cCCCC---ceEEeccC-----CCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCC
Confidence 00000 11111111 12222222211 112455678899999999999999999943 677899
Q ss_pred ccccceecc
Q 006808 373 SKRGRYVQN 381 (630)
Q Consensus 373 ~~~~w~~~~ 381 (630)
++++|++++
T Consensus 333 tv~vwd~~t 341 (426)
T d1hzua2 333 SVAVFDLKN 341 (426)
T ss_dssp CEEEEETTC
T ss_pred EEEEEECCC
Confidence 999999864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=1.5e-19 Score=179.64 Aligned_cols=274 Identities=8% Similarity=-0.003 Sum_probs=183.9
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEecc-cccccccccccccccccccccceeeEEecccccccccccCCcEE-
Q 006808 12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL- 89 (630)
Q Consensus 12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l- 89 (630)
+|+++++||++++.+++|.|||+.+++.+.+++. +...+..+.|+|+ ++++
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD---------------------------G~~l~ 55 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD---------------------------NRTAY 55 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT---------------------------SSEEE
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC---------------------------CCEEE
Confidence 8999999999999999999999999999988763 2333333444443 5555
Q ss_pred EEEeCCCeEEEEEccCCeeeEEccCCCC-----CCEEEEEEecCCCEEEEEe------------CCCcEEEEeCCCCcee
Q 006808 90 VLGTGGGDVLALAVSAGQLKWRLSDCHP-----GGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLL 152 (630)
Q Consensus 90 ~~~~~~g~v~iwd~~~~~~~~~~~~~h~-----~~v~~~~~s~~g~~l~s~~------------~dg~v~iwd~~~~~~~ 152 (630)
+++..++.|.+||+.+++.+..+..... ..+..++|+|||+++++++ .++.+.+|+..+++..
T Consensus 56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (346)
T d1jmxb_ 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135 (346)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence 5556789999999999988766543221 2456899999999988765 4678899998887665
Q ss_pred EEeec--CCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee-----------
Q 006808 153 GKFRA--STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------- 219 (630)
Q Consensus 153 ~~~~~--~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~----------- 219 (630)
..+.. ....+..+.+++++..++ .++.+.+|++.+++.+..+..+. ....+.++|++..++....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (346)
T d1jmxb_ 136 KPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTI 213 (346)
T ss_dssp CCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred eEEEeeeccCceEEEEecCCCEEEE-eCCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeee
Confidence 44332 233566677777776554 45778999999998887776443 2233444554443322221
Q ss_pred --------------CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcc
Q 006808 220 --------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 220 --------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 285 (630)
.+..+.+|++.++... ......+.........+ +++.+++.+.. +.+.+||..+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~v~v~d~~~~~ 283 (346)
T d1jmxb_ 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTH---TQEFADLTELYFTGLRS------PKDPNQIYGVL-NRLAKYDLKQRK 283 (346)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEEC------SSCTTEEEEEE-SEEEEEETTTTE
T ss_pred eeeccCceeEeeccCCceEEEEECCCCceE---EEEeecccceeEEEEEe------CCCCEEEEecC-CeEEEEECCCCc
Confidence 2445677777665533 22222344444444433 56666666554 578999987765
Q ss_pred cccccCceeEEeeccCCCcccccchhhhhhhccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceee
Q 006808 286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP 365 (630)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (630)
.++.. .+...+.+++|||||++|
T Consensus 284 ~~~~~--------------------------------------------------------~~~~~~~~va~s~DG~~l- 306 (346)
T d1jmxb_ 284 LIKAA--------------------------------------------------------NLDHTYYCVAFDKKGDKL- 306 (346)
T ss_dssp EEEEE--------------------------------------------------------ECSSCCCEEEECSSSSCE-
T ss_pred EEEEE--------------------------------------------------------cCCCCEEEEEEcCCCCEE-
Confidence 43221 111246789999999999
Q ss_pred ccccceeccccceecc
Q 006808 366 MSQSLLKSKRGRYVQN 381 (630)
Q Consensus 366 ~s~s~d~~~~~w~~~~ 381 (630)
++++.|+.+++|+.+.
T Consensus 307 ~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 307 YLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EEESBSSEEEEEETTT
T ss_pred EEEeCCCcEEEEECcc
Confidence 8888999999999864
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=3.6e-16 Score=154.12 Aligned_cols=278 Identities=14% Similarity=0.168 Sum_probs=177.9
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEec--ccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEe-CC
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-GG 95 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~-~~ 95 (630)
.+++++.|++|+||++.+...+..++ .+.+.+..+.|+|+ +++|++++ .+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD---------------------------G~~L~v~~~~d 58 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD---------------------------KRYLYVGVRPE 58 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT---------------------------SSEEEEEETTT
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC---------------------------CCEEEEEECCC
Confidence 45677789999999987654333222 34444555555555 67775555 57
Q ss_pred CeEEEEEccCCeeeEEc--cCCCCCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCceeEE--eecCCCCeEEEEEccC
Q 006808 96 GDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGK--FRASTKGISCMAVSSD 170 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~--~~~h~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~ 170 (630)
+.|.+|++......... ...+...+..++|+|+|+++++++. ++.|.+|+......... ...+...+.++.++|+
T Consensus 59 ~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d 138 (333)
T d1ri6a_ 59 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD 138 (333)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred CeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeec
Confidence 89999999765432121 1124456788999999999988874 67899998776654433 3445667889999999
Q ss_pred CCEEEEeC---CeEEEEECCCCceeeEe------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce--e
Q 006808 171 GKMLATAA---GQLKTFNCSDHKKMQKF------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--C 239 (630)
Q Consensus 171 ~~~l~~~~---g~i~lwd~~~~~~~~~~------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~--~ 239 (630)
++++++++ ..|.+|+.......... ..+......++|++++.+++......+...+|+.......... .
T Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 218 (333)
T d1ri6a_ 139 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 218 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeee
Confidence 99988887 68999998765432211 1234456889999999998887766778888887654322100 0
Q ss_pred eeeec---CCceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccchhhhhh
Q 006808 240 VLAME---HPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF 315 (630)
Q Consensus 240 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 315 (630)
..... ..........++ ++++++++. ..++.+.+|++..........
T Consensus 219 ~~~~~~~~~~~~~~~~~~~s-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 269 (333)
T d1ri6a_ 219 LDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVLSKE------------------------ 269 (333)
T ss_dssp EECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCEEEE------------------------
T ss_pred eeeeecCCCccccceeEEEe-----cccCceeeecccCCeEEEEEEcCCCCEEEEE------------------------
Confidence 11111 011112233444 888876665 446788898875432211000
Q ss_pred hccccccccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcceeeccccceeccccceec
Q 006808 316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 316 ~~~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~ 380 (630)
....+......++|||||++|.++++.++.+++|++.
T Consensus 270 ----------------------------~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 270 ----------------------------GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp ----------------------------EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ----------------------------EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 0001112456789999999885777778999999763
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=2.1e-16 Score=155.80 Aligned_cols=242 Identities=11% Similarity=0.059 Sum_probs=167.7
Q ss_pred eEeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
..++|+|||++++ +++.++.|.+||+.+++.+..+..+..... ......++|.+. +.
T Consensus 37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~-------------~~~~~~v~~s~d---------g~ 94 (337)
T d1pbyb_ 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER-------------VKSLFGAALSPD---------GK 94 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE-------------EECTTCEEECTT---------SS
T ss_pred cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccc-------------ccceeeEEEcCC---------Cc
Confidence 3559999999874 666799999999999999888765432211 011122333332 44
Q ss_pred EEEEEe------------CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 88 LLVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 88 ~l~~~~------------~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
.++++. .++.+.+||..++.....+. +...+.+++|+|+|+++++++.+ +.+||..+++....+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~ 170 (337)
T d1pbyb_ 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDK 170 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEE
T ss_pred EEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEe
Confidence 444443 46779999999999876664 45678899999999999998654 778999999888776
Q ss_pred ecCCCCeEEEEEccCCCEE------------------------EEeC--CeEEEEECCCCceeeE-eecCCCCeEEEEEe
Q 006808 156 RASTKGISCMAVSSDGKML------------------------ATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFS 208 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l------------------------~~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~~s 208 (630)
..+... ....+.|++..+ ..+. +.+.+|+..++..... +..+...+..+.++
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (337)
T d1pbyb_ 171 PIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp CSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred ecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec
Confidence 643321 111222221111 1111 3688999988875443 45677788889999
Q ss_pred eCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccc
Q 006808 209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR 288 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 288 (630)
|++.+++.. ++.|++||+.+++.. ....+... +.++.|+ |||++|++++.+|.|+|||..+++.+.
T Consensus 250 ~~~~~~~~~---~~~i~v~d~~~~~~~-----~~~~~~~~-~~~~~~s-----~dG~~l~v~~~~~~i~v~D~~t~~~v~ 315 (337)
T d1pbyb_ 250 PAKTRAFGA---YNVLESFDLEKNASI-----KRVPLPHS-YYSVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp TTSSEEEEE---ESEEEEEETTTTEEE-----EEEECSSC-CCEEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred ccceEEEEc---cccEEEEECCCCcEE-----EEEcCCCC-EEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 999987654 578999999998743 23333332 3456676 999999999999999999999988766
Q ss_pred ccC
Q 006808 289 NTK 291 (630)
Q Consensus 289 ~~~ 291 (630)
..+
T Consensus 316 ~i~ 318 (337)
T d1pbyb_ 316 QVD 318 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.68 E-value=5.3e-14 Score=140.90 Aligned_cols=193 Identities=9% Similarity=-0.086 Sum_probs=132.8
Q ss_pred CcccceeEeEECCCCCEEEEee-----CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccc
Q 006808 3 SSNIRDILTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~ 77 (630)
.+|+..+ +++|||+.++... ..+.|.+||..+++.+.++..+.. ..+.|+|+
T Consensus 20 ~~p~~~~--a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpD------------------- 76 (373)
T d2madh_ 20 DGPTNDE--APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHS------------------- 76 (373)
T ss_pred CCCcccc--ccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCC-------------------
Confidence 4678555 9999999887642 346799999999999988764332 13445544
Q ss_pred cccccccCCcEEEEEe----------CCCeEEEEEccCCeeeEEccCCCCCC-------EEEEEEecCCCEEEEEe--CC
Q 006808 78 RKKKRKLGSSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGG-------VSAISFATHGSCIYSAG--AD 138 (630)
Q Consensus 78 ~~~~~~~~~~~l~~~~----------~~g~v~iwd~~~~~~~~~~~~~h~~~-------v~~~~~s~~g~~l~s~~--~d 138 (630)
+..|+++. .++.|.+||..+++.+..+.. +... ...+.|+++++.++... .+
T Consensus 77 --------G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~ 147 (373)
T d2madh_ 77 --------GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIEL-PDAPRFDVGPYSWMNANTPNNADLLFFQFAAG 147 (373)
T ss_pred --------CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEec-CCcceeEeccCCCcEEEEeCCCcEEEEEEcCC
Confidence 55565554 457899999999998766542 3222 25678999998766554 45
Q ss_pred CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEE-eC--CeEEEEECCCCceeeEeecC------CCCeEEEEEee
Q 006808 139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSD 209 (630)
Q Consensus 139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~-~~--g~i~lwd~~~~~~~~~~~~h------~~~v~~l~~sp 209 (630)
+.+.+|+....+...... ...++.++|+|+.+++ .+ +.+.+|+...+........+ ......+.+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T d2madh_ 148 PAVGLVVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred CceEEeeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC
Confidence 688999988776654433 4567899999876643 33 89999999988776655322 22234456666
Q ss_pred CCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 210 NGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 210 ~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
++.+++. + .++.+.+|+.....
T Consensus 224 ~~~~~~~-~-~~~~v~~~~~~~~~ 245 (373)
T d2madh_ 224 SGRIVWP-V-YSGKILQADISAAG 245 (373)
T ss_pred CceEEEe-c-CCceEEEEEcCCCe
Confidence 6655543 4 58899999988765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.63 E-value=5.2e-15 Score=146.17 Aligned_cols=244 Identities=11% Similarity=-0.031 Sum_probs=161.5
Q ss_pred EeEECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++|+|||++++ +++.++.|.+||+.+++.+..+........ .......+++.+. +.+
T Consensus 44 ~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~------------~~~~~~~v~~s~D---------G~~ 102 (346)
T d1jmxb_ 44 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE------------VGRSMYSFAISPD---------GKE 102 (346)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE------------EEECSSCEEECTT---------SSE
T ss_pred eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc------------cCCceEEEEEecC---------CCE
Confidence 459999999875 555789999999999998877653221100 0001112233222 444
Q ss_pred EEEEe------------CCCeEEEEEccCCeeeEEccC-CCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEe
Q 006808 89 LVLGT------------GGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 89 l~~~~------------~~g~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~ 155 (630)
++++. .++.+.+|+..+++....+.. .....+..+.+++++..+++ ++.+.+|++.+++.+..+
T Consensus 103 l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 179 (346)
T d1jmxb_ 103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVAL 179 (346)
T ss_dssp EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEE
T ss_pred EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEE
Confidence 54443 467799999988765432221 12234666777777765544 245899999999988887
Q ss_pred ecCCCCeEEEEEccCCCEEE--------------------------EeC--CeEEEEECCCCceeeE-eecCCCCeEEEE
Q 006808 156 RASTKGISCMAVSSDGKMLA--------------------------TAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMT 206 (630)
Q Consensus 156 ~~~~~~v~~l~~~p~~~~l~--------------------------~~~--g~i~lwd~~~~~~~~~-~~~h~~~v~~l~ 206 (630)
..+.. ...+.++|++..++ ++. +.+.+|+..++..... +..|...+..+.
T Consensus 180 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (346)
T d1jmxb_ 180 PLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258 (346)
T ss_dssp CSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred ecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEE
Confidence 65432 23344455443321 112 4678889888775443 456788889999
Q ss_pred EeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 207 ~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
+++++.+++... ++.|.+||+.+++.. ....... .+..++|+ |||++|++++.||.|+|||..+++.
T Consensus 259 ~~~~~~~~~~~~--~~~v~v~d~~~~~~~-----~~~~~~~-~~~~va~s-----~DG~~l~v~~~d~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 259 RSPKDPNQIYGV--LNRLAKYDLKQRKLI-----KAANLDH-TYYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEK 325 (346)
T ss_dssp ECSSCTTEEEEE--ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEE
T ss_pred EeCCCCEEEEec--CCeEEEEECCCCcEE-----EEEcCCC-CEEEEEEc-----CCCCEEEEEeCCCcEEEEECccCCE
Confidence 999998888765 568999999988643 2222222 24456676 9999999999999999999999988
Q ss_pred ccccC
Q 006808 287 LRNTK 291 (630)
Q Consensus 287 ~~~~~ 291 (630)
+...+
T Consensus 326 i~~i~ 330 (346)
T d1jmxb_ 326 VKNIK 330 (346)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=2e-13 Score=134.00 Aligned_cols=250 Identities=10% Similarity=0.135 Sum_probs=161.7
Q ss_pred CcccceeEeEECCCCCEEEEee-CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccc
Q 006808 3 SSNIRDILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 3 s~~V~~~~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~ 81 (630)
.+.|+.+ +|||||++|++++ .|+.|++|++........+..+.. .......++|.+.
T Consensus 36 ~~~v~~l--a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~---------------~~~~p~~l~~spD----- 93 (333)
T d1ri6a_ 36 PGQVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---------------LPGSLTHISTDHQ----- 93 (333)
T ss_dssp SSCCCCE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---------------CSSCCSEEEECTT-----
T ss_pred CCCEeEE--EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc---------------cCCCceEEEEcCC-----
Confidence 3567555 9999999986555 589999999987654433322111 1112334555554
Q ss_pred cccCCcEEEEEeC-CCeEEEEEccCCeeeEEc-cCCCCCCEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCceeEE----
Q 006808 82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK---- 154 (630)
Q Consensus 82 ~~~~~~~l~~~~~-~g~v~iwd~~~~~~~~~~-~~~h~~~v~~~~~s~~g~~l~s~~-~dg~v~iwd~~~~~~~~~---- 154 (630)
+++|++++. ++.|.+|+.......... ...+...+.++.|+|+++++++++ .+..+.+|+.........
T Consensus 94 ----g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (333)
T d1ri6a_ 94 ----GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA 169 (333)
T ss_dssp ----SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred ----CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence 677777775 667999998876543222 124667788999999999987776 455799999776533221
Q ss_pred --eecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCce----eeEee------cCCCCeEEEEEeeCCcEEEEEee
Q 006808 155 --FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK----MQKFS------GHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 155 --~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~----~~~~~------~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
..........++|++++.+++... +...+|+...... ..... ........++++++++++++++.
T Consensus 170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~ 249 (333)
T d1ri6a_ 170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR 249 (333)
T ss_dssp EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence 112334668899999998887665 6777887654321 11221 12345677899999999888877
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEE--cCCcc
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWY--GQNIE 285 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd--~~~~~ 285 (630)
.++.+.+|++....... ..............+.|+ |||++|++++. ++.|.+|+ ..+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~a~s-----pDGk~l~va~~~~~~v~v~~id~~tG~ 311 (333)
T d1ri6a_ 250 TASLITVFSVSEDGSVL--SKEGFQPTETQPRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGL 311 (333)
T ss_dssp TTTEEEEEEECTTSCCE--EEEEEEECSSSCCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred cCCeEEEEEEcCCCCEE--EEEEEeCCCCCeeEEEEe-----CCCCEEEEEECCCCeEEEEEEECCCCc
Confidence 78899999987654321 111111112223345666 99999887765 68899995 45553
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.62 E-value=1.9e-13 Score=136.79 Aligned_cols=246 Identities=9% Similarity=-0.009 Sum_probs=161.3
Q ss_pred EeEECCCCCEEEEeeC----------CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 10 LTSFSPALDYFAICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 10 ~~~fs~dg~~las~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++|||||++|++++. ++.|.|||+.+++.+..+..+..........+ ..+.|.+.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-----------~~~~~s~d--- 135 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-----------WMNANTPN--- 135 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-----------CcEEEEeC---
Confidence 3599999999998753 57899999999999888765543332211111 12344443
Q ss_pred cccccCCcEEEEE--eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCCcEEEEeCCCCceeEEee
Q 006808 80 KKRKLGSSLLVLG--TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR 156 (630)
Q Consensus 80 ~~~~~~~~~l~~~--~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~v~iwd~~~~~~~~~~~ 156 (630)
+..+++. ..++.+.+|+....+... +...+.++.|+|+|+. +++.+.|+.+.+|+...+.......
T Consensus 136 ------g~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 204 (373)
T d2madh_ 136 ------NADLLFFQFAAGPAVGLVVQGGSSDDQ-----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV 204 (373)
T ss_pred ------CCcEEEEEEcCCCceEEeeccCCeEEE-----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence 3333333 445668889888776642 3345678899999876 4678899999999999887766654
Q ss_pred cCC------CCeEEEEEccCCCEEEEeC-CeEEEEECCCCceee--EeecCC----------CCeEEEEEeeCCcEEEEE
Q 006808 157 AST------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ--KFSGHP----------GAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 157 ~~~------~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~--~~~~h~----------~~v~~l~~sp~~~~l~~~ 217 (630)
.+. .....+.+.+++.+++.+. +.+++|+..++.... ....+. .....++++|++..++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 284 (373)
T d2madh_ 205 GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred eeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe
Confidence 321 1234556677776766665 889999987765322 222111 223445666766654432
Q ss_pred ---------eeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCE--EEEEecCCcEEEEEcCCccc
Q 006808 218 ---------AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY--VLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 218 ---------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~s~s~dg~i~iwd~~~~~~ 286 (630)
...++.+.+||..+++.. ..+.+... ...+.|+ |||+. +++++.|+.|+|||..+++.
T Consensus 285 ~~~~~~~~~~~~~~~v~~~d~~t~~~~-----~~~~~~~~-~~~~a~s-----pDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 285 TSEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGHD-VDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred cCCCceEEeecCCCeEEEEECCCCcEE-----EEecCCCC-eeEEEEC-----CCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 124678999999888743 23333333 3445666 99984 46788899999999999998
Q ss_pred ccccC
Q 006808 287 LRNTK 291 (630)
Q Consensus 287 ~~~~~ 291 (630)
++...
T Consensus 354 ~~~~~ 358 (373)
T d2madh_ 354 DQSTV 358 (373)
T ss_pred EEEEC
Confidence 77654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=1.5e-14 Score=143.83 Aligned_cols=188 Identities=9% Similarity=-0.037 Sum_probs=128.9
Q ss_pred EECCCCCEEEEee-----CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCC
Q 006808 12 SFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS 86 (630)
Q Consensus 12 ~fs~dg~~las~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 86 (630)
+.+|||+.+++.. .+++|.|||..+++.+.++..+.. ..+.|+|+ +
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpD---------------------------g 58 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADD---------------------------G 58 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTT---------------------------S
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCC---------------------------C
Confidence 7899999887653 356799999999999888764321 12334443 4
Q ss_pred cEEEEE----------eCCCeEEEEEccCCeeeEEccC--CC----CCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCC
Q 006808 87 SLLVLG----------TGGGDVLALAVSAGQLKWRLSD--CH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLT 148 (630)
Q Consensus 87 ~~l~~~----------~~~g~v~iwd~~~~~~~~~~~~--~h----~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~ 148 (630)
+.|+++ ..+|.|.+||+.+++....+.. .+ ......++|+|+|++++.++ .+..+.+|+..+
T Consensus 59 ~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~ 138 (355)
T d2bbkh_ 59 SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 138 (355)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred CEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCC
Confidence 445543 4478899999999988755431 11 12345689999999987764 567899999999
Q ss_pred CceeEEeecCCC-------CeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEe
Q 006808 149 GSLLGKFRASTK-------GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 149 ~~~~~~~~~~~~-------~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
++.+..+..+.. ....+.++++++.++... +.+.+++...... .+...+....+.+++..++.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 213 (355)
T d2bbkh_ 139 KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPT 213 (355)
T ss_dssp TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEB
T ss_pred CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEec
Confidence 998887765432 223456777777666554 4555555544322 2334455667888888888876
Q ss_pred eCCCeEEEEEcCCCcc
Q 006808 219 VGERYIALWRTDGVKK 234 (630)
Q Consensus 219 ~~d~~i~vwd~~~~~~ 234 (630)
.++.+++|++..+..
T Consensus 214 -~~~~~~v~~~~~~~~ 228 (355)
T d2bbkh_ 214 -YTGKIHQIDLSSGDA 228 (355)
T ss_dssp -TTSEEEEEECTTSSC
T ss_pred -CCCeEEEEecCCCcE
Confidence 699999999988753
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.52 E-value=1.8e-12 Score=129.11 Aligned_cols=241 Identities=7% Similarity=0.007 Sum_probs=152.0
Q ss_pred EEEeeCCCcEEEEECCCCcEEEEeccccccccccccccccccccc------------------ccceeeEEecccccccc
Q 006808 20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL------------------SVDYTCMKWLSVDRKKK 81 (630)
Q Consensus 20 las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~------------------~~~~~~~~w~~~~~~~~ 81 (630)
|++|+.+|.|+||++.+++.+..+.- |+++-..+.- ......+.+....++
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD-- 82 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD-- 82 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECS---------SSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE--
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCC--
Confidence 56788899999999999999888743 2221000000 000011111111222
Q ss_pred cccCCcEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE--EEEEeCCC-----------------cE
Q 006808 82 RKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC--IYSAGADG-----------------MV 141 (630)
Q Consensus 82 ~~~~~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~--l~s~~~dg-----------------~v 141 (630)
+++|++.. .+..|.++|+.+.+....+...+...+.+++|+|+|+. ++..+.+. .+
T Consensus 83 ----Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~ 158 (441)
T d1qnia2 83 ----GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF 158 (441)
T ss_dssp ----EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred ----CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence 66676655 66779999999998876554457788999999999985 43333332 23
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C-----------------------------------------
Q 006808 142 CEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------------------------------- 179 (630)
Q Consensus 142 ~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g----------------------------------------- 179 (630)
..+|..+.+...++... .....+.|+|+|+++++++ +
T Consensus 159 ~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~ 237 (441)
T d1qnia2 159 TAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS 237 (441)
T ss_dssp EEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence 55888888877776644 3567899999999888764 1
Q ss_pred -eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc------cceeeeeecCCceeeee
Q 006808 180 -QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------SASCVLAMEHPAVFMDC 252 (630)
Q Consensus 180 -~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~ 252 (630)
.+.+++......+..++.+.. ...+.++|||+++++++..++++.+||+.+.... ...++........-...
T Consensus 238 ~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh 316 (441)
T d1qnia2 238 KVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLH 316 (441)
T ss_dssp CCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEE
T ss_pred CcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccc
Confidence 122333333344555554444 4678999999999998888999999998764311 00111111111111111
Q ss_pred EEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 253 RCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 253 ~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
..|. ++|..+.+...|..|..|++.
T Consensus 317 ~~fd-----~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 317 TTFD-----GRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEC-----SSSEEEEEETTTTEEEEEEHH
T ss_pred ceec-----CCceEEEcccccceEEEeccc
Confidence 2344 888888888889999999973
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=4.7e-12 Score=125.27 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=150.6
Q ss_pred EeEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccc
Q 006808 10 LTSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK 79 (630)
Q Consensus 10 ~~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~ 79 (630)
.++|||||++|++.+ .|+.|++||..+++.+..+..+........ .....+.|.+.
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~-----------~~~~~~~~s~d--- 116 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG-----------TYPWMTSLTPD--- 116 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS-----------CCGGGEEECTT---
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecC-----------CCCceEEEecC---
Confidence 349999999887643 478999999999999887765433221111 11123444443
Q ss_pred cccccCCcEEEEEe--CCCeEEEEEccCCeeeEEccCCCC------CCEEEEEEecCCCEEEEE-eCCCcEEEEeCCCCc
Q 006808 80 KKRKLGSSLLVLGT--GGGDVLALAVSAGQLKWRLSDCHP------GGVSAISFATHGSCIYSA-GADGMVCEIDPLTGS 150 (630)
Q Consensus 80 ~~~~~~~~~l~~~~--~~g~v~iwd~~~~~~~~~~~~~h~------~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~~~~~ 150 (630)
+..++++. .+..+.+|+..+++.+..+..... .....+.++++|..++.. ..++.+.+++.....
T Consensus 117 ------g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~ 190 (355)
T d2bbkh_ 117 ------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH 190 (355)
T ss_dssp ------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred ------CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence 55566665 345699999999988765542211 112334555555554433 233344444433322
Q ss_pred eeEEeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCCCcee--eEeecCC----------CCeEEEEEeeCCcEEEE
Q 006808 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM--QKFSGHP----------GAVRFMTFSDNGKYVLS 216 (630)
Q Consensus 151 ~~~~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~--~~~~~h~----------~~v~~l~~sp~~~~l~~ 216 (630)
. .+...+....+.+++..++.++ +.+++|++..+... .....+. .....++++|++..++.
T Consensus 191 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~ 265 (355)
T d2bbkh_ 191 P-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 265 (355)
T ss_dssp C-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred c-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence 1 1223445566777777777665 89999999887532 2222221 22345889999988877
Q ss_pred EeeCC---------CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCC--EEEEEecCCcEEEEEcCCcc
Q 006808 217 SAVGE---------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIE 285 (630)
Q Consensus 217 ~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~s~dg~i~iwd~~~~~ 285 (630)
..... +.|.+||..+++.. ..+... .....+.|+ |||+ ++++++.|+.|+|||..+++
T Consensus 266 ~~~~~~~~~~~~~~~~v~v~d~~t~~~~-----~~~~~~-~~~~~~a~s-----pDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 266 LVDQRDEWRHKTASRFVVVLDAKTGERL-----AKFEMG-HEIDSINVS-----QDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEE-EEECEEEEC-----CSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EeccCCceeecCCCCeEEEEeCCCCcEE-----EEecCC-CCEEEEEEc-----CCCCeEEEEEECCCCEEEEEECCCCC
Confidence 65322 37999999988643 122222 224455666 9987 45566779999999999998
Q ss_pred cccccC
Q 006808 286 ELRNTK 291 (630)
Q Consensus 286 ~~~~~~ 291 (630)
.++...
T Consensus 335 ~~~~i~ 340 (355)
T d2bbkh_ 335 ELRSVN 340 (355)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 877654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.47 E-value=2.4e-12 Score=133.23 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=101.9
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
..+.|.++++++.. .|+.+.+||..+++....+..+... .+ ...+.++.|.|. ++.
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~------------~~-~~~i~~~~~SpD---------g~~ 75 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFD------------EF-GHSINDYSISPD---------GQF 75 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTT------------TS-SSCCCEEEECTT---------SSE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhh------------hc-cCccceeEECCC---------CCE
Confidence 34589999988764 4788999999999987655433210 11 112344455443 667
Q ss_pred EEEEeC---------CCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC-
Q 006808 89 LVLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS- 158 (630)
Q Consensus 89 l~~~~~---------~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~- 158 (630)
|++++. .+.+.+||+.+++.. . ...|...+..+.|||||+.++.. .++.+++|+..+++..+....+
T Consensus 76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~-l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~ 152 (470)
T d2bgra1 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-T-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK 152 (470)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC-C-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEECCcceeeeccCceEEEEECCCCccc-c-cccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccC
Confidence 777643 467899999999864 3 34688899999999999999886 5678999999988766543221
Q ss_pred -----------------CCCeEEEEEccCCCEEEEeC
Q 006808 159 -----------------TKGISCMAVSSDGKMLATAA 178 (630)
Q Consensus 159 -----------------~~~v~~l~~~p~~~~l~~~~ 178 (630)
.+....+.|+|||+.|++..
T Consensus 153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (470)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence 12345688999999999874
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=2.3e-11 Score=121.20 Aligned_cols=246 Identities=9% Similarity=0.015 Sum_probs=157.0
Q ss_pred eEECCCCCEEEEee----------CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccc
Q 006808 11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK 80 (630)
Q Consensus 11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~ 80 (630)
++|+|||++|++.+ .|+.|++||..+++.+..+..+....... ......++|.+.
T Consensus 70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~-----------g~~p~~~a~SpD---- 134 (368)
T d1mdah_ 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV-----------GPRVHIIGNCAS---- 134 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB-----------SCCTTSEEECTT----
T ss_pred ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc-----------cCCccceEECCC----
Confidence 48999999888754 36789999999999988876443322111 111123445443
Q ss_pred ccccCCcEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEE-----
Q 006808 81 KRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----- 154 (630)
Q Consensus 81 ~~~~~~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~----- 154 (630)
+++++++. .++.+.+||+.+++....+.......+ +......++..+.||.+..|++........
T Consensus 135 -----Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~ 205 (368)
T d1mdah_ 135 -----SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp -----SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred -----CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence 66677666 568899999999998766543222111 112344566777888888888765433222
Q ss_pred -eecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEe--ecC----------CCCeEEEEEeeCCcEEEEEeeCC
Q 006808 155 -FRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKF--SGH----------PGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 155 -~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~--~~h----------~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
+..+...+....+.+++..+...++.+++++...+...... ..+ ......++++|++..+++....+
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~ 285 (368)
T d1mdah_ 206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH 285 (368)
T ss_dssp SCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred cccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence 22233455677888888887777788888887766543221 111 11234578899988776654222
Q ss_pred --------CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCE--EEEEecCCcEEEEEcCCcccccccC
Q 006808 222 --------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY--VLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 222 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
..|.+||..+++.. ..+... .....+.|+ |||+. ++++..++.|++||..+++.++..+
T Consensus 286 ~~~~~~~~~~v~v~D~~t~~~~-----~~~~~~-~~~~~~a~s-----pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 286 SRSCLAAAENTSSVTASVGQTS-----GPISNG-HDSDAIIAA-----QDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SSCTTSCEEEEEEEESSSCCEE-----ECCEEE-EEECEEEEC-----CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CceeecCCceEEEEECCCCcEe-----EEecCC-CceeEEEEC-----CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 35899999988643 222222 234456666 99863 4556678999999999998877654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.24 E-value=6.6e-11 Score=117.81 Aligned_cols=264 Identities=9% Similarity=-0.062 Sum_probs=147.3
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCceeEEeecCCC------
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRASTK------ 160 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~------ 160 (630)
.|.+||..+++.+..+.. +..+ .++|+|||++|++++ .|+.|.+||..+++++..+..+..
T Consensus 47 ~~~~~d~~~~~~~~~~~~-~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g 123 (368)
T d1mdah_ 47 ENWVSCAGCGVTLGHSLG-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEeCCCCcEEEEEeC-CCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceeccc
Confidence 477889999998866643 3333 589999999988764 467899999999999888764432
Q ss_pred -CeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCC-cEEEEEeeCCCeEEEEEcCCCccc
Q 006808 161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 161 -~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
....++|+|||++++++. +.+.+||+.+++....+..+.... +.|.+ ..+++.+ .|+.+.+|++......
T Consensus 124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~-~Dg~~~~~~~~~~~~~ 198 (368)
T d1mdah_ 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGS-CPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCC-CTTSCEEEECCSSCCC
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEc-CCCCEEEEEecCCcee
Confidence 234689999999998775 799999999999888876554432 12222 3344433 6888888877655432
Q ss_pred ccee-eeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccCce---------eEEee--ccCCC
Q 006808 236 SASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT---------KILSS--SEDVN 303 (630)
Q Consensus 236 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~~~~--~~~~~ 303 (630)
.... ...............+. +++..+.+ ..+.+++++............. ..... ....+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 271 (368)
T d1mdah_ 199 AGIVGAQCTGAQNCSSQAAQAN-----YPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEET-----TTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred eeeeecccccccccceeecccc-----cCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEE
Confidence 1000 00011111222223333 45544433 3445555555443221110000 00000 00012
Q ss_pred cccccchhhhhhhccccc-cc-cCCceeEEEEEcCccCceeeEEeccCCCcEEEeecCCcc-eeeccccceeccccceec
Q 006808 304 SKSQKSATAAIFAAKLQD-IV-KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ 380 (630)
Q Consensus 304 ~~~~~~~~~~i~~~~~d~-~~-~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~ 380 (630)
++++. .++....++ .. ......+++.+ ......+..+. +...+..++|||||+ +|.++++.|+++++|+..
T Consensus 272 ~~~~~----~~~v~~~~~~~~~~~~~~~v~v~D-~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 272 LKNTD----GIMILTVEHSRSCLAAAENTSSVT-ASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp ETTTT----EEEEEEEECSSCTTSCEEEEEEEE-SSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred cCCCC----EEEEEecCCCceeecCCceEEEEE-CCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 22322 222222211 11 11122333333 22223333332 334678899999997 343778889999999986
Q ss_pred c
Q 006808 381 N 381 (630)
Q Consensus 381 ~ 381 (630)
.
T Consensus 346 t 346 (368)
T d1mdah_ 346 S 346 (368)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.14 E-value=8.6e-08 Score=90.57 Aligned_cols=242 Identities=14% Similarity=0.171 Sum_probs=154.3
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
++++|+|+++++-...++|++||.. |..+..+..... .....+. ...+.+.... +..++
T Consensus 28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~-~~~~~~~-----------p~~~~~~~~~--------~~~~~ 86 (279)
T d1q7fa_ 28 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK-RDSQLLY-----------PNRVAVVRNS--------GDIIV 86 (279)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS-STTCBSS-----------EEEEEEETTT--------TEEEE
T ss_pred EEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCC-Ccccccc-----------cccccccccc--------cccce
Confidence 4899999988877778899999964 777776642211 1111111 1122222221 33333
Q ss_pred EE-eCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec--CCCCeEEEEE
Q 006808 91 LG-TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGISCMAV 167 (630)
Q Consensus 91 ~~-~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~ 167 (630)
+. +.++.|.+++.. +.....+.........++++.++|..+++....+.+.+++. +++.+..+.. +......+++
T Consensus 87 ~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~ 164 (279)
T d1q7fa_ 87 TERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVV 164 (279)
T ss_dssp EECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEE
T ss_pred eccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeee
Confidence 33 344567777764 44444554445567889999999998888877888888885 5666666643 3447788999
Q ss_pred ccCCCEEEEeC--CeEEEEECCCCceeeEee--cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeee
Q 006808 168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM 243 (630)
Q Consensus 168 ~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 243 (630)
.+++.++++.. +.|++||. +++.+.++. +.......|++.|+|+.+++-...++.|.+|+.. ++.. ..+..
T Consensus 165 d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~---~~~~~ 239 (279)
T d1q7fa_ 165 NDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI---SALES 239 (279)
T ss_dssp CSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE---EEEEE
T ss_pred ccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEE---EEEeC
Confidence 99998777766 79999996 566676663 3445678999999998776644334579999854 3321 12221
Q ss_pred cCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
.........+++. |+|.+++ ++.+..|++|......+
T Consensus 240 ~~~~~~p~~vav~-----~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 240 KVKHAQCFDVALM-----DDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp SSCCSCEEEEEEE-----TTTEEEE-EETTTEEEEEECSCCCC
T ss_pred CCCCCCEeEEEEe-----CCCcEEE-EeCCCeEEEEEeeeecC
Confidence 2222223344455 8887554 56788999999866543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.12 E-value=6.4e-10 Score=110.40 Aligned_cols=190 Identities=8% Similarity=0.012 Sum_probs=124.5
Q ss_pred EECCCCCEEEEee-CCCcEEEEECCCCcEEEEecc-cccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPALDYFAICS-GDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
.++|||++|++.. .+++|.++|+.++++...+.- ....+..+.|+++ +.. .++
T Consensus 78 ~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spd---g~t----------------------~YV 132 (441)
T d1qnia2 78 DGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKV---PKT----------------------NYV 132 (441)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCS---SBC----------------------CEE
T ss_pred cccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEecc---CCE----------------------EEE
Confidence 4679999887665 588999999999998876642 2344445555554 221 122
Q ss_pred EEEeCC-----------------CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC--------------
Q 006808 90 VLGTGG-----------------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-------------- 138 (630)
Q Consensus 90 ~~~~~~-----------------g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-------------- 138 (630)
+..+.+ ..+..+|..+.+...++..+ +.+..+.|+|+|+++++++.+
T Consensus 133 ~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~ 210 (441)
T d1qnia2 133 FCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRND 210 (441)
T ss_dssp EEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS
T ss_pred EeccCCcccccCcccccccccccceEEeecCccceeeEEEecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcce
Confidence 222211 12456888888777666432 457889999999998877643
Q ss_pred ---------------------------CcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCC
Q 006808 139 ---------------------------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD 188 (630)
Q Consensus 139 ---------------------------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~ 188 (630)
+.+.+++....+.+..+..... ...+.++|||+++++++ ++|.+||+.+
T Consensus 211 ~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 211 RDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp BCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred EEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 3445555555556666665444 57899999999988876 7999999865
Q ss_pred Cce--------eeEeecC---CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 189 HKK--------MQKFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 189 ~~~--------~~~~~~h---~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
... ...+.++ .-.....+|.++|..+.+ ...|..|..|++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts-~~~ds~v~kw~~~ 341 (441)
T d1qnia2 290 LDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT-LFIDSQVCKWNIA 341 (441)
T ss_dssp HHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE-ETTTTEEEEEEHH
T ss_pred hhhHhhccCCcceEEEeecccccCcccceecCCceEEEc-ccccceEEEeccc
Confidence 321 1111122 123456689999865544 4479999999984
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.08 E-value=6.5e-08 Score=95.28 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=99.9
Q ss_pred CCCEEEEEEecCCCEEEEEeC-CCcEEEEeCCC-Ccee--EEee--cCCCCeEEEEEccCCCEEEEeC---CeEEEEECC
Q 006808 117 PGGVSAISFATHGSCIYSAGA-DGMVCEIDPLT-GSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS 187 (630)
Q Consensus 117 ~~~v~~~~~s~~g~~l~s~~~-dg~v~iwd~~~-~~~~--~~~~--~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~ 187 (630)
...+.++.|+|+|+++++++. ...|.+|+... +... .... ........++|+|+++++.+.. ++|.+|++.
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence 345789999999999888764 45788887543 3222 1222 2345789999999999887765 799999987
Q ss_pred CCceeeE-----ee--------------cCCCCeEEEEEeeCCcEEEEEeeCCC-----eEEEEEcCCCccccc-eeeee
Q 006808 188 DHKKMQK-----FS--------------GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSA-SCVLA 242 (630)
Q Consensus 188 ~~~~~~~-----~~--------------~h~~~v~~l~~sp~~~~l~~~~~~d~-----~i~vwd~~~~~~~~~-~~~~~ 242 (630)
.++.... .. .+......+.++|+|++|+++...+. .|..|++........ .....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 6543211 11 11123567899999999988764333 377777765432110 11111
Q ss_pred ecCCceeeeeEEecCCccCC-CCCEEEEEe-cCCcEEEEEcC
Q 006808 243 MEHPAVFMDCRCIDNGGVDD-AGLYVLAIS-ETGVCYIWYGQ 282 (630)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s-~dg~i~iwd~~ 282 (630)
..........+.++ | +|++|++++ .++.|.+|+..
T Consensus 304 ~~~~G~~p~~i~~~-----p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 304 TPTSGGHSNAVSPC-----PWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CSSCCTTCCCEEEC-----TTCTTEEEEECSSSCEEEEEEEE
T ss_pred EEcCCCCccEEEec-----CCCCCEEEEEeCCCCeEEEEEEe
Confidence 11111122334444 6 789887775 57899999864
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.08 E-value=1.2e-08 Score=100.60 Aligned_cols=284 Identities=10% Similarity=0.028 Sum_probs=153.7
Q ss_pred EEEEEeC--CCeEEE--EEccCCee--eEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEe-ecCC
Q 006808 88 LLVLGTG--GGDVLA--LAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKF-RAST 159 (630)
Q Consensus 88 ~l~~~~~--~g~v~i--wd~~~~~~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~-~~~~ 159 (630)
.|++|+. .+.|.+ +|..+++. +..........+..|+|+|++++|+++.. +.+..|.+.. +...... ....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence 3677764 456655 45555554 22222234456778999999999988865 4577776653 2222221 1223
Q ss_pred CCeEEEEEccCCCE--EEEeC---CeEEEEECCCC-ceee------------Ee----ecCCCCeEEEEEeeCCcEEEEE
Q 006808 160 KGISCMAVSSDGKM--LATAA---GQLKTFNCSDH-KKMQ------------KF----SGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 160 ~~v~~l~~~p~~~~--l~~~~---g~i~lwd~~~~-~~~~------------~~----~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
.....+.++|+++. ++++. ++|..+.+... .... .. ......+.++.|+|+|++++++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 34567888998884 44443 56665543221 1100 00 1122347899999999999998
Q ss_pred eeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEec-CCcEEEEEcCCcccccccCceeE-
Q 006808 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKI- 295 (630)
Q Consensus 218 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~- 295 (630)
......|.+|+....................-...+.|+ |+++++.+..+ ++.|.+|+...............
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-----pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~ 237 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-----PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC-----CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence 866678999987654322111111222233445556666 99998866665 78999999866543211110000
Q ss_pred -----------------EeeccCCCcccccchhhhhhhcccc-ccccCCceeEEEEEcC-ccC--ceeeEEeccCCCcEE
Q 006808 296 -----------------LSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLK--PSFQKILVNSGEDIN 354 (630)
Q Consensus 296 -----------------~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~~~~~g~-~~~--~~~~~~~~h~~~v~~ 354 (630)
.......++|+++ +++++... ..........+..... ... ..+......-..-..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~----~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~ 313 (365)
T d1jofa_ 238 LIPPGIPDRDPETGKGLYRADVCALTFSGK----YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA 313 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSS----EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred cccccccccccccccccCCccceEECCCCC----EEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccE
Confidence 0111223567776 55555432 2111111111111110 000 001111112223467
Q ss_pred EeecC-Ccceeeccccceeccccceecc
Q 006808 355 LNCSQ-DGVLLPMSQSLLKSKRGRYVQN 381 (630)
Q Consensus 355 ~~~s~-dg~~l~~s~s~d~~~~~w~~~~ 381 (630)
++++| +|++|.+++..++.+.+|++..
T Consensus 314 i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 314 VSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 88998 8998867888889999998753
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.97 E-value=2e-09 Score=110.64 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=110.0
Q ss_pred eeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEc----cCCCCCCEEEEEEecCCCEEEEEeC-------
Q 006808 69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGA------- 137 (630)
Q Consensus 69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~----~~~h~~~v~~~~~s~~g~~l~s~~~------- 137 (630)
..+.|.+. +.+++ ..+|.+.+||+.+++....+ +..|...|.++.|||||++|+.++.
T Consensus 20 ~~~~W~~d---------~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~ 88 (470)
T d2bgra1 20 YSLRWISD---------HEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (470)
T ss_dssp CCCEECSS---------SEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred cCCEeCCC---------CEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeee
Confidence 34668764 44443 46788999999999875322 2345578999999999999888743
Q ss_pred --CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecC----------------
Q 006808 138 --DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH---------------- 198 (630)
Q Consensus 138 --dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h---------------- 198 (630)
++.+.+||+.+++. ..+..+...+..+.|+|||+.+|... +.+++|+..+++..+....+
T Consensus 89 s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~ 167 (470)
T d2bgra1 89 SYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (470)
T ss_dssp CEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred ccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeee
Confidence 56789999998874 45777888999999999999999987 89999999988765433211
Q ss_pred --CCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 199 --PGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 199 --~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.+....+.|||||++|+.....+..+..|.
T Consensus 168 ~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred eecCCccccEECCCCCccceeEecCCcCceEE
Confidence 123456889999999999875444344443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.96 E-value=1.6e-07 Score=87.69 Aligned_cols=231 Identities=9% Similarity=-0.031 Sum_probs=131.0
Q ss_pred EeEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcE
Q 006808 10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL 88 (630)
Q Consensus 10 ~~~fs~dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 88 (630)
.++++++|+.+++. +..+.+..++................ ...+++.+. +.+
T Consensus 18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------------p~gvav~~~---------g~i 70 (260)
T d1rwia_ 18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ------------------PQGLAVDGA---------GTV 70 (260)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCS------------------CCCEEECTT---------CCE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccC------------------ceEEEEcCC---------CCE
Confidence 44899999966554 45577777765433322211110111 112333221 455
Q ss_pred EEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEc
Q 006808 89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS 168 (630)
Q Consensus 89 l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~ 168 (630)
+++....+.+.+++-.+...+... .....+.++++.++|+++++-..+..+..++...................++++
T Consensus 71 ~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~ 148 (260)
T d1rwia_ 71 YVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD 148 (260)
T ss_dssp EEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC
T ss_pred EEeeeeeceeeeeeeccceeeeee--eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec
Confidence 555444455666555544443222 233568999999999887776667777777765443222111222355789999
Q ss_pred cCCCEEEEeC--CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeecCC
Q 006808 169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 169 p~~~~l~~~~--g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
|+++++++.. +.|..++.............-.....|++.++|..+++.. ..+.|..++....... ..... .
T Consensus 149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~~~~~----~~~~~-~ 222 (260)
T d1rwia_ 149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST----VLPFT-G 222 (260)
T ss_dssp TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTTEEEEECTTCSCCE----ECCCC-S
T ss_pred CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec-CCCEEEEEeCCCCeEE----EEccC-C
Confidence 9998777665 7899999765543322223445678999999997665554 5778888876554321 11111 1
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCCcEEEEE
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd 280 (630)
-.....+++. ++|..+++-..+++|+.++
T Consensus 223 ~~~P~~i~~d-----~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 223 LNTPLAVAVD-----SDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CCCEEEEEEC-----TTCCEEEEEGGGTEEEEEC
T ss_pred CCCeEEEEEe-----CCCCEEEEECCCCEEEEEe
Confidence 1122345555 7787777666666666554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.80 E-value=8.7e-07 Score=84.52 Aligned_cols=225 Identities=10% Similarity=0.028 Sum_probs=136.9
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
++++|||+++++...+++|..|+.. +... .+..... ...++++.+. +++++
T Consensus 33 iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~~~~------------------~~~gla~~~d---------G~l~v 83 (302)
T d2p4oa1 33 LASAPDGTIFVTNHEVGEIVSITPD-GNQQ-IHATVEG------------------KVSGLAFTSN---------GDLVA 83 (302)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTT-CCEE-EEEECSS------------------EEEEEEECTT---------SCEEE
T ss_pred EEECCCCCEEEEeCCCCEEEEEeCC-CCEE-EEEcCCC------------------CcceEEEcCC---------CCeEE
Confidence 4999999999998889988888865 3322 2222222 2345555443 77788
Q ss_pred EEeCCCeEEEEEccCCe--eeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec--------C--
Q 006808 91 LGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--------S-- 158 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~-- 158 (630)
+...++.+..|+..... ...............+++.++|+++++.+.++.+..+|...+........ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (302)
T d2p4oa1 84 TGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 163 (302)
T ss_dssp EEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred EecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCc
Confidence 88888888888765432 21111123446689999999998888888889999999887653322211 1
Q ss_pred CCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeE--eecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 159 ~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
......+.+.. ..+..+. +.|+.++......... ...+......++|.++|+++++.. .++.|..++.....
T Consensus 164 ~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~-~~~~V~~i~p~G~~ 240 (302)
T d2p4oa1 164 FPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPDRST 240 (302)
T ss_dssp SCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB-TTCCEEEECTTCCE
T ss_pred ccccccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc-CCCcEEEECCCCCE
Confidence 12345566654 3444433 7888888765432211 111233456799999998766655 57888888776532
Q ss_pred cccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecC
Q 006808 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET 273 (630)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 273 (630)
.. +............++|... .+|++.|..++..
T Consensus 241 ~~----~~~~~~~~~~pt~vafg~~--~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 241 TI----IAQAEQGVIGSTAVAFGQT--EGDCTAIYVVTNG 274 (302)
T ss_dssp EE----EECGGGTCTTEEEEEECCS--TTTTTEEEEEECT
T ss_pred EE----EEecCCCCCCceEEEEcCC--CCCCCEEEEECCC
Confidence 11 2222223333455666311 1677877766554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2.1e-07 Score=94.54 Aligned_cols=199 Identities=8% Similarity=0.037 Sum_probs=119.6
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
..|.+++.++.. ..+|.|.+||+.+++....+...... ...+....|.|. ++.++
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~SpD---------~~~vl 76 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REYAL 76 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSEEE
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCcccc---------------ccccceeEECCC---------CCeEE
Confidence 368888876643 45789999999888764433321110 111222233332 55566
Q ss_pred EEe---------CCCeEEEEEccCCeeeEEc-cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-
Q 006808 91 LGT---------GGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST- 159 (630)
Q Consensus 91 ~~~---------~~g~v~iwd~~~~~~~~~~-~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~- 159 (630)
.++ ..+.+.+||+.++...... .......+....|||+|+.++-.. ++.|.+.+..++..++......
T Consensus 77 ~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~ 155 (465)
T d1xfda1 77 FSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKE 155 (465)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBT
T ss_pred EEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCc
Confidence 654 3567899999988764221 122334566789999999987764 5678888887776554433211
Q ss_pred CC-----------------eEEEEEccCCCEEEEeC---C---------------------------------eEEEEEC
Q 006808 160 KG-----------------ISCMAVSSDGKMLATAA---G---------------------------------QLKTFNC 186 (630)
Q Consensus 160 ~~-----------------v~~l~~~p~~~~l~~~~---g---------------------------------~i~lwd~ 186 (630)
.. -.++-|+|||++||... . .+.++|+
T Consensus 156 ~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~ 235 (465)
T d1xfda1 156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (465)
T ss_dssp TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred ceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec
Confidence 11 24678999999999853 1 1344555
Q ss_pred CCCceeeEe-e-----cCCCCeEEEEEeeCCcEEEEEeeCCC---eEEEEEcCCCccc
Q 006808 187 SDHKKMQKF-S-----GHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDGVKKQ 235 (630)
Q Consensus 187 ~~~~~~~~~-~-----~h~~~v~~l~~sp~~~~l~~~~~~d~---~i~vwd~~~~~~~ 235 (630)
.++...... . .....+..+.|+|+++.++.....+. .|.++|..+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~ 293 (465)
T d1xfda1 236 NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (465)
T ss_dssp SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence 443321111 0 11223678899999987666543332 5788888887643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=3.1e-06 Score=78.83 Aligned_cols=192 Identities=15% Similarity=0.172 Sum_probs=114.7
Q ss_pred eEeEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 9 ILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
+.-+|||||++||..... ..+.+.+..++...... .+.. ......|.+.
T Consensus 42 ~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------~~~~~~~spd--------- 93 (269)
T d2hqsa1 42 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPR------------------HNGAPAFSPD--------- 93 (269)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSS------------------CEEEEEECTT---------
T ss_pred eeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe-eeec------------------ccccceecCC---------
Confidence 456999999999987653 24666677665543322 1111 2334555554
Q ss_pred CcEEEEEe-CCCe--EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEE-EeCCC--cEEEEeCCCCceeEEeecCC
Q 006808 86 SSLLVLGT-GGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 86 ~~~l~~~~-~~g~--v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~ 159 (630)
+..++... ..+. +..+........ .. ..+........+++++..++. ...++ .|...++..+... .+....
T Consensus 94 g~~i~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~ 170 (269)
T d2hqsa1 94 GSKLAFALSKTGSLNLYVMDLASGQIR-QV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG 170 (269)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEE-EC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS
T ss_pred CCeeeEeeecCCccceeecccccccce-ee-eeccccccccccccccccceecccccCCceEeeeecccccce-eeeccc
Confidence 34444433 3444 333333333332 22 234455566677887776544 44455 4555566555433 333345
Q ss_pred CCeEEEEEccCCCEEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC--CeEEEEEcCCC
Q 006808 160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGV 232 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d--~~i~vwd~~~~ 232 (630)
.......|+|+++.++..+ + .+.+++...+.. ....+........|+|||++|+..+... ..|+++++..+
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 5677889999999988876 3 566666655543 3334556677889999999988766432 36888998876
Q ss_pred c
Q 006808 233 K 233 (630)
Q Consensus 233 ~ 233 (630)
.
T Consensus 249 ~ 249 (269)
T d2hqsa1 249 F 249 (269)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.73 E-value=5.3e-06 Score=79.20 Aligned_cols=236 Identities=14% Similarity=0.140 Sum_probs=138.3
Q ss_pred eEECCCCCEEEEeeC-------CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccc
Q 006808 11 TSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK 83 (630)
Q Consensus 11 ~~fs~dg~~las~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~ 83 (630)
.+|+|+|+++++... +|+|..||..++............ .......+.+.+.
T Consensus 23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~--------------~~g~P~Gl~~~~d------- 81 (314)
T d1pjxa_ 23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG--------------YGGIPAGCQCDRD------- 81 (314)
T ss_dssp EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT--------------EECCEEEEEECSS-------
T ss_pred eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcccc--------------CCCcceeEEEeCC-------
Confidence 389999997776432 467888998877654332211000 0001223444332
Q ss_pred cCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCC---CCEEEEEEecCCCEEEEEeC---------------CCcEEEEe
Q 006808 84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSCIYSAGA---------------DGMVCEID 145 (630)
Q Consensus 84 ~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~s~~~---------------dg~v~iwd 145 (630)
++.++++...+.|..++...+........... ...+++++.++|++.++-.. .|.|..++
T Consensus 82 --g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 --ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp --SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred --CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEe
Confidence 66778888777788999876654321111111 13678999999987776422 23455555
Q ss_pred CCCCceeEEeecCCCCeEEEEEccCCC----EEEEeC---CeEEEEECCCCceee------Eeec-CCCCeEEEEEeeCC
Q 006808 146 PLTGSLLGKFRASTKGISCMAVSSDGK----MLATAA---GQLKTFNCSDHKKMQ------KFSG-HPGAVRFMTFSDNG 211 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~~~----~l~~~~---g~i~lwd~~~~~~~~------~~~~-h~~~v~~l~~sp~~ 211 (630)
. .++...... .-.....++|+|++. .|.++. +.|+.|++.....+. .+.+ +......+++.++|
T Consensus 160 ~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~G 237 (314)
T d1pjxa_ 160 T-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp T-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred e-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCC
Confidence 3 243333222 223446889998764 454443 788888875432221 2222 12335689999999
Q ss_pred cEEEEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEE-EEEecCCcEEEEEcC
Q 006808 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQ 282 (630)
Q Consensus 212 ~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~ 282 (630)
+.+++.. ..+.|.+|+...+... . .+..+....+.++|. |+++.| ++.+.+|.|..+++.
T Consensus 238 nlyVa~~-~~g~I~~~dp~~g~~~---~--~i~~p~~~~t~~afg-----~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 238 NLLVANW-GSSHIEVFGPDGGQPK---M--RIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEE-TTTEEEEECTTCBSCS---E--EEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECS
T ss_pred cEEEEEc-CCCEEEEEeCCCCEEE---E--EEECCCCCEEEEEEe-----CCCCEEEEEECCCCcEEEEECC
Confidence 8766654 5788999998876533 1 222333345567777 888754 555667888888853
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.2e-05 Score=74.50 Aligned_cols=234 Identities=9% Similarity=-0.016 Sum_probs=128.5
Q ss_pred eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceeEEeecCCCCeEEEEEccCCCE
Q 006808 97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM 173 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 173 (630)
.|.|.|....... .+. .+...+.+.+|||||+.|+...... .+.+.+...+... .+..+........|+|+|..
T Consensus 20 ~l~i~d~dG~~~~-~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQF-VVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSCE-EEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCcE-EEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCe
Confidence 4777776654443 332 3456788999999999987664332 4666676655543 44556778889999999999
Q ss_pred EEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCC--eEEEEEcCCCccccceeeeeecCC
Q 006808 174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP 246 (630)
Q Consensus 174 l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~ 246 (630)
++... + .+..+....... .....+........+++++..++..+..++ .|.+.++...... ......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-----~~~~~~ 170 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-----RITWEG 170 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-----ECCCSS
T ss_pred eeEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccce-----eeeccc
Confidence 88765 2 333344333332 223334445556677888877666654555 4555555554321 111222
Q ss_pred ceeeeeEEecCCccCCCCCEEEEEecCC-c--EEEEEcCCcccccccCc-eeEEeeccCCCcccccchhhhhhhcccccc
Q 006808 247 AVFMDCRCIDNGGVDDAGLYVLAISETG-V--CYIWYGQNIEELRNTKA-TKILSSSEDVNSKSQKSATAAIFAAKLQDI 322 (630)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~s~s~dg-~--i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~ 322 (630)
. ......++ |++..++..+.++ . +.+.+...+........ ..... .++|+++ .|+..+..+
T Consensus 171 ~-~~~~~~~s-----pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p----~~SPDG~----~i~f~s~~~- 235 (269)
T d2hqsa1 171 S-QNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP----SLAPNGT----MVIYSSSQG- 235 (269)
T ss_dssp S-EEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEE----EECTTSS----EEEEEEEET-
T ss_pred c-cccccccc-----cccceeEEEeecCCceeeeEeecccccceEeecCccccce----EECCCCC----EEEEEEcCC-
Confidence 2 22333444 8999888876644 4 44445444432221111 11121 2788888 565444322
Q ss_pred ccCCceeEEEEEcCccCceeeEEeccCCCcEEEeecC
Q 006808 323 VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ 359 (630)
Q Consensus 323 ~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~ 359 (630)
....+.+..- .......+....+.+...+|||
T Consensus 236 ---~~~~l~~~~~--dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 236 ---MGSVLNLVST--DGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp ---TEEEEEEEET--TSCCEEECCCSSSEEEEEEECC
T ss_pred ---CCcEEEEEEC--CCCCEEEEeCCCCcEEeEEeCC
Confidence 0122222221 1122334555566677778887
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.66 E-value=1.3e-05 Score=76.64 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=128.6
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
++|+++|+++++-...++|..|+..++.....+......+. .+++.+. +.+++
T Consensus 45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~------------------gla~~~d---------G~l~v 97 (319)
T d2dg1a1 45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA------------------AIKIHKD---------GRLFV 97 (319)
T ss_dssp EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE------------------EEEECTT---------SCEEE
T ss_pred CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee------------------EEEECCC---------CCEEE
Confidence 38999999777766788898888877665544433222222 3333322 55555
Q ss_pred EEeCC----CeEEEEEccCCeeeEEccC-CCCCCEEEEEEecCCCEEEEEeC------CCcEEEEeCCCCceeEEeecCC
Q 006808 91 LGTGG----GDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST 159 (630)
Q Consensus 91 ~~~~~----g~v~iwd~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~ 159 (630)
+...+ +.+...+..++........ .-...+..+++.++|++.++... .+.+..++...+ .+..+...-
T Consensus 98 a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~ 176 (319)
T d2dg1a1 98 CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNI 176 (319)
T ss_dssp EECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEE
T ss_pred EecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeecc
Confidence 54332 3355556555544322211 11245789999999986665432 233555554433 333332223
Q ss_pred CCeEEEEEccCCCEEEEeC---CeEEEEECCCC-ceeeEe-------ecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEE
Q 006808 160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR 228 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~-~~~~~~-------~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd 228 (630)
.....++|+|+++.|.++. +.|+.|++... ...... .........+++.++|+..++.. ..+.|.+|+
T Consensus 177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~~g~V~~~~ 255 (319)
T d2dg1a1 177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-GQGRVLVFN 255 (319)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-TTTEEEEEC
T ss_pred ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-CCCEEEEEC
Confidence 3457899999998776665 79999987642 211111 11122356799999998766655 689999999
Q ss_pred cCCCccccceeeeeecC----CceeeeeEEecCCccCCCCCEEEEEec
Q 006808 229 TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISE 272 (630)
Q Consensus 229 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~s~ 272 (630)
.. ++.. ....++. ......+++|. +++..+++.+.
T Consensus 256 p~-G~~l---~~i~~P~~~~~~~~~~~~~~~~-----~~~~~~~~t~~ 294 (319)
T d2dg1a1 256 KR-GYPI---GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSN 294 (319)
T ss_dssp TT-SCEE---EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEE
T ss_pred CC-CcEE---EEEeCCCcCCCcCceeeeEEEe-----CCCCEEEEEcC
Confidence 64 4432 1122221 12234556665 66666665544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.54 E-value=2.3e-05 Score=74.92 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=125.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC----CCcEEEEeCCCCceeEEeecC--C
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTGSLLGKFRAS--T 159 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~--~ 159 (630)
+++.++-...|.|+.|++.++.....+. .......+++|+++|+++++... .+.+...+............. .
T Consensus 51 G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 129 (319)
T d2dg1a1 51 GQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 129 (319)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred CCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcc
Confidence 6666666678889999998876553332 34567899999999987776543 234555565555443333221 2
Q ss_pred CCeEEEEEccCCCEEEEeC--------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 160 KGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 160 ~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
.....+++.|+|++.++.. +.++.++...+ .+..+...-...+.++|+|+++.|+++.+..+.|..|++..
T Consensus 130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~ 208 (319)
T d2dg1a1 130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 208 (319)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence 3577899999999877643 34666665433 33333323345678999999998877766788999999865
Q ss_pred Cccccce---eeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccc
Q 006808 232 VKKQSAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN 289 (630)
Q Consensus 232 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 289 (630)
....... .............-+++. ++|++.++....|.|.+|+. .|+.+..
T Consensus 209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD-----~~G~l~Va~~~~g~V~~~~p-~G~~l~~ 263 (319)
T d2dg1a1 209 DGVTIQPFGATIPYYFTGHEGPDSCCID-----SDDNLYVAMYGQGRVLVFNK-RGYPIGQ 263 (319)
T ss_dssp TSSSEEEEEEEEEEECCSSSEEEEEEEB-----TTCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred CCceeccccceeeeccCCccceeeeeEc-----CCCCEEEEEcCCCEEEEECC-CCcEEEE
Confidence 4221000 011111111223456665 78998888888899999994 6765543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.53 E-value=3.8e-06 Score=77.92 Aligned_cols=190 Identities=8% Similarity=0.023 Sum_probs=116.4
Q ss_pred eEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
++++++|.++++....+.+++++..++..+....+ ......+++.+. +++++
T Consensus 62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-------------------~~~p~~iavd~~---------g~i~v 113 (260)
T d1rwia_ 62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-------------------LNYPEGLAVDTQ---------GAVYV 113 (260)
T ss_dssp EEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-------------------CCSEEEEEECTT---------CCEEE
T ss_pred EEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-------------------eeeccccccccc---------ceeEe
Confidence 48889998877777677777766554443322111 011233444332 45555
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccC
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD 170 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~ 170 (630)
+-..+..+..++.......... ..-.....++++.++|+.+++...++.|..+|.............-.....+++.++
T Consensus 114 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~ 192 (260)
T d1rwia_ 114 ADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA 192 (260)
T ss_dssp EEGGGTEEEEECTTCSSCEECC-CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred eccccccccccccccceeeeee-ecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeee
Confidence 5445555777766554432221 122345678999999998888888889999997755433322233456789999999
Q ss_pred CCEEEEeC--CeEEEEECCCCceeeEee-cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 171 GKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 171 ~~~l~~~~--g~i~lwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
|.++++.. +.|..++..... ...+. ..-.....|+++++|..+++-. .++.|+.++...
T Consensus 193 g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~-~~~rI~~i~~~~ 254 (260)
T d1rwia_ 193 GTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLE 254 (260)
T ss_dssp CCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEG-GGTEEEEECCCG
T ss_pred eeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEEC-CCCEEEEEeCCC
Confidence 98877776 678888765443 22222 2234568999999997655543 566666555433
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.51 E-value=1.2e-05 Score=76.68 Aligned_cols=115 Identities=8% Similarity=0.055 Sum_probs=81.9
Q ss_pred CCEEEEEEecCCC----EE-EEEeCCCcEEEEeCCCCceeE------EeecC-CCCeEEEEEccCCCEEEEeC--CeEEE
Q 006808 118 GGVSAISFATHGS----CI-YSAGADGMVCEIDPLTGSLLG------KFRAS-TKGISCMAVSSDGKMLATAA--GQLKT 183 (630)
Q Consensus 118 ~~v~~~~~s~~g~----~l-~s~~~dg~v~iwd~~~~~~~~------~~~~~-~~~v~~l~~~p~~~~l~~~~--g~i~l 183 (630)
...+.++|+|++. .| ++-+..+.|..||+.....+. .+... ......+++.++|+++++.. +.|.+
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence 3457899999765 44 445677889998876432222 12221 22356799999998876653 89999
Q ss_pred EECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 184 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
||...++.+..+..+....++++|.|+++.|+++.+.++.|...++...
T Consensus 252 ~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 9998888777777666778999999999877666656788888886553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.50 E-value=8.1e-06 Score=77.52 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=120.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCc--eeEEee-cCCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR-ASTKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~--~~~~~~-~~~~~v 162 (630)
++++++...+++|..|+....... + ......+.+++|.++|+++++...++.+..|+..... ...... ......
T Consensus 39 G~l~vt~~~~~~I~~i~p~g~~~~--~-~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (302)
T d2p4oa1 39 GTIFVTNHEVGEIVSITPDGNQQI--H-ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL 115 (302)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEE--E-EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred CCEEEEeCCCCEEEEEeCCCCEEE--E-EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCcccc
Confidence 778888888999999987654332 2 2355789999999999988888888888888765432 222111 234467
Q ss_pred EEEEEccCCCEEEEeC--CeEEEEECCCCceeeEee----------cCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcC
Q 006808 163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~--g~i~lwd~~~~~~~~~~~----------~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~ 230 (630)
..+++.++++++++.+ +.+..++...+....... ........+.+. +.+++.+....+.|..+++.
T Consensus 116 n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~ 193 (302)
T d2p4oa1 116 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVD 193 (302)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBC
T ss_pred ceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccc
Confidence 8999999998888876 788888887765322211 111234555554 55666666678889888887
Q ss_pred CCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcC
Q 006808 231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282 (630)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 282 (630)
............ .......+++. ++|.+.++...++.|..|+..
T Consensus 194 ~~~~~~~~~~~~---~~~~pdgia~d-----~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 194 STDKPGEPEIFV---EQTNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp TTSCBCCCEEEE---ESCCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred cccccccccccc---CCCCCcceEEC-----CCCCEEEEEcCCCcEEEECCC
Confidence 654321111111 11123445665 889988887888899988764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.45 E-value=3e-05 Score=72.42 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=102.9
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEc-cCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeec--CCCCe
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGI 162 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~-~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v 162 (630)
+.++++....+.+.+++... +.+..+ ...+......+++.++|+.+++....+.|++||. +++.+.++.. .....
T Consensus 125 G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P 202 (279)
T d1q7fa_ 125 GRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYP 202 (279)
T ss_dssp SCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSE
T ss_pred CcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCC
Confidence 55555556666677777654 333333 2345677899999999988888888899999995 5777777642 33357
Q ss_pred EEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
..|++.|+|+++++-. +.|.+|+ .+|+.+.++... ......|++.|+|.++ ++. .++.|++|......
T Consensus 203 ~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~-~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 203 IGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVV-LAS-KDYRLYIYRYVQLA 275 (279)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEE-EEE-TTTEEEEEECSCCC
T ss_pred cccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEe-CCCeEEEEEeeeec
Confidence 8999999999777644 4699998 468877776432 3457899999999754 445 58899999877643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=6.7e-05 Score=75.53 Aligned_cols=177 Identities=14% Similarity=0.051 Sum_probs=102.4
Q ss_pred EeEECCCCCEEEEee---------CCCcEEEEECCCCcEEEEecc--cccccccccccccccccccccceeeEEeccccc
Q 006808 10 LTSFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDR 78 (630)
Q Consensus 10 ~~~fs~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~ 78 (630)
...|||||++++... ..+.+.+||+.++........ ....+....|+|+
T Consensus 65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD-------------------- 124 (465)
T d1xfda1 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK-------------------- 124 (465)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--------------------
T ss_pred eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC--------------------
Confidence 348999999988764 356788999988875432111 1111112333333
Q ss_pred ccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCE-----------------EEEEEecCCCEEEEEeC-CCc
Q 006808 79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGA-DGM 140 (630)
Q Consensus 79 ~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~g~~l~s~~~-dg~ 140 (630)
+..|+... ++.|.+.+..++..+.....+....| .++-|||||++|+.... +..
T Consensus 125 -------G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~ 196 (465)
T d1xfda1 125 -------GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR 196 (465)
T ss_dssp -------TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred -------CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccc
Confidence 45555543 56788888877665544433322222 57789999999887642 232
Q ss_pred E---------------------------------EEEeCCCCceeEEee------cCCCCeEEEEEccCCCEEEEeC---
Q 006808 141 V---------------------------------CEIDPLTGSLLGKFR------ASTKGISCMAVSSDGKMLATAA--- 178 (630)
Q Consensus 141 v---------------------------------~iwd~~~~~~~~~~~------~~~~~v~~l~~~p~~~~l~~~~--- 178 (630)
| .++|+.++....... ....-+..+.|+|++++++...
T Consensus 197 V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~ 276 (465)
T d1xfda1 197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA 276 (465)
T ss_dssp SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred cceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc
Confidence 3 333433322111110 0111356789999998776654
Q ss_pred ---CeEEEEECCCCceeeEeecC-CCCe----EEEEEeeCCcEE
Q 006808 179 ---GQLKTFNCSDHKKMQKFSGH-PGAV----RFMTFSDNGKYV 214 (630)
Q Consensus 179 ---g~i~lwd~~~~~~~~~~~~h-~~~v----~~l~~sp~~~~l 214 (630)
..+.++|..++++...+..+ .+.| ....|+|+|+.+
T Consensus 277 q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred cccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence 37889999999865544322 2222 345789999854
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.38 E-value=6.8e-05 Score=70.50 Aligned_cols=193 Identities=13% Similarity=0.031 Sum_probs=127.5
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecC----CCC
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKG 161 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~ 161 (630)
+.+..+=-..+.|..||+.+++...-. ....+.++++.++|.++++ +.+ .+..+|..+++........ ...
T Consensus 30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~ 104 (295)
T d2ghsa1 30 GTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNR 104 (295)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCccc
Confidence 445555556788999999998764221 3357889999999876655 455 4889999988754433211 125
Q ss_pred eEEEEEccCCCEEEEeC------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 162 ISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
+..+.+.|+|++.++.. +.-.+|.+..++....+.. -...+.++|+++++.++.+.+..+.|..|++......
T Consensus 105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~ 183 (295)
T d2ghsa1 105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL 183 (295)
T ss_dssp EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred ceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccc
Confidence 78899999999877653 3456666666765444433 3346789999999988877767889999987543211
Q ss_pred --cceee-eeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccccccc
Q 006808 236 --SASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290 (630)
Q Consensus 236 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 290 (630)
..... ............+++. .+|++.++.-..|.|..||. .|+.+...
T Consensus 184 ~~~~~~~~~~~~~~~g~pdG~~vD-----~~GnlWva~~~~g~V~~~dp-~G~~~~~i 235 (295)
T d2ghsa1 184 PTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT-DGNHIARY 235 (295)
T ss_dssp BSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred cccceEEEeccCcccccccceEEc-----CCCCEEeeeeCCCceEEecC-CCcEeeEe
Confidence 11111 1222233345556665 78888877777889999994 67666554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.18 E-value=0.00011 Score=68.14 Aligned_cols=229 Identities=12% Similarity=0.067 Sum_probs=120.4
Q ss_pred EECCC--CCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEE
Q 006808 12 SFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL 89 (630)
Q Consensus 12 ~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l 89 (630)
..||| |+.+|..+. |.|.+.|+.+++.. .+....+......|+|+ ++.|
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPD---------------------------G~~i 55 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPD---------------------------GRKI 55 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTT---------------------------SSEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCC---------------------------CCEE
Confidence 56899 999987764 67888899887754 44444444444444444 5555
Q ss_pred EEEeC-CC-----eEEEEEccCCeeeEEccC-----CCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCCcee
Q 006808 90 VLGTG-GG-----DVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLL 152 (630)
Q Consensus 90 ~~~~~-~g-----~v~iwd~~~~~~~~~~~~-----~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~~~~ 152 (630)
+.... ++ .|.+++..+++...-... ..........|+|+|+.++..... ..+...+...+...
T Consensus 56 af~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (281)
T d1k32a2 56 AIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 135 (281)
T ss_dssp EEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred EEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence 54432 22 477888888876522111 112345778999999998765322 23445555444432
Q ss_pred EEeecCCCCeEEEEEccCCCEEEEeC-C------------eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 153 GKFRASTKGISCMAVSSDGKMLATAA-G------------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 153 ~~~~~~~~~v~~l~~~p~~~~l~~~~-g------------~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
.. +........+.+++..++... . ....+....... .....+........++++..+......
T Consensus 136 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (281)
T d1k32a2 136 PL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHRIYFITDID 211 (281)
T ss_dssp EC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTEEEEEECTT
T ss_pred Ee---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccccceecccc
Confidence 21 222223333333333444332 0 111222222222 222233344455566665433222221
Q ss_pred CCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCccc
Q 006808 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE 286 (630)
Q Consensus 220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 286 (630)
....|.++|+.+.... . +.. .... ....++ |||+.|+. ..+|.|+++|+.+++.
T Consensus 212 ~~~~l~~~d~~g~~~~---~-lt~-~~~~--~~~~~S-----pDG~~I~f-~~~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 212 GFGQIYSTDLDGKDLR---K-HTS-FTDY--YPRHLN-----TDGRRILF-SKGGSIYIFNPDTEKI 265 (281)
T ss_dssp SSCEEEEEETTSCSCE---E-CCC-CCSS--CEEEEE-----ESSSCEEE-EETTEEEEECTTTCCE
T ss_pred cccceEEEeCCCCceE---E-eec-CCCc--ccccCc-----CCCCEEEE-EeCCEEEEEECCCCCE
Confidence 2346888888776533 1 111 1111 122345 89998876 4568899999987764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.12 E-value=0.0021 Score=59.85 Aligned_cols=217 Identities=13% Similarity=0.079 Sum_probs=126.4
Q ss_pred EECCCCCEEE-EeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEE
Q 006808 12 SFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV 90 (630)
Q Consensus 12 ~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~ 90 (630)
.|++....|. +=-..++|.-||..+++.. .+.. ...+.++++... +. ++
T Consensus 24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-------------------~~~~~~i~~~~d---------g~-l~ 73 (295)
T d2ghsa1 24 TFDPASGTAWWFNILERELHELHLASGRKT-VHAL-------------------PFMGSALAKISD---------SK-QL 73 (295)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-------------------SSCEEEEEEEET---------TE-EE
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-------------------CCCcEEEEEecC---------CC-EE
Confidence 4666444333 3334678888888777543 2210 112344554432 33 45
Q ss_pred EEeCCCeEEEEEccCCeeeEEccCCC---CCCEEEEEEecCCCEEEEEeC----CCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 91 LGTGGGDVLALAVSAGQLKWRLSDCH---PGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 91 ~~~~~g~v~iwd~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+++.+ .+.++|..+++........+ ...++++.+.|+|++.++... .+.-.+|.+..++....+.. -....
T Consensus 74 va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~N 151 (295)
T d2ghsa1 74 IASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPN 151 (295)
T ss_dssp EEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEE
T ss_pred EEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcc
Confidence 55554 58899999987642221111 125789999999987655432 23445666666765544443 23457
Q ss_pred EEEEccCCCEEEEeC---CeEEEEECCCCc------e--eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCC
Q 006808 164 CMAVSSDGKMLATAA---GQLKTFNCSDHK------K--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV 232 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~---g~i~lwd~~~~~------~--~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~ 232 (630)
.++|+|+++.+..+. +.|+.|++.... . ...+.+..+....+++.++|++.++.- ..+.|..|+.. +
T Consensus 152 g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~-~~g~V~~~dp~-G 229 (295)
T d2ghsa1 152 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDTD-G 229 (295)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECTT-C
T ss_pred eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee-CCCceEEecCC-C
Confidence 899999998776654 789888874321 1 112233445678899999998666543 57789999965 4
Q ss_pred ccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEe
Q 006808 233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271 (630)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 271 (630)
+.. ..+..+....++++|.. ++.+.|+..+
T Consensus 230 ~~~-----~~i~lP~~~~T~~~FGG----~d~~~LyvTt 259 (295)
T d2ghsa1 230 NHI-----ARYEVPGKQTTCPAFIG----PDASRLLVTS 259 (295)
T ss_dssp CEE-----EEEECSCSBEEEEEEES----TTSCEEEEEE
T ss_pred cEe-----eEecCCCCceEEEEEeC----CCCCEEEEEE
Confidence 422 23333333455666641 5655555443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.95 E-value=0.003 Score=60.19 Aligned_cols=191 Identities=10% Similarity=0.071 Sum_probs=117.2
Q ss_pred CcEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecC--CCEEEEEeCC------------------CcEEEE
Q 006808 86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGAD------------------GMVCEI 144 (630)
Q Consensus 86 ~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~d------------------g~v~iw 144 (630)
|+++++.. .++.|.+.|+.+.++...+.......+..+...++ -.+++..+.+ +.+.++
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I 178 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 178 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence 66777766 56779999999988755443345567888777654 4466666543 236778
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC-C----------------eEEEEEC---------------------
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNC--------------------- 186 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~-g----------------~i~lwd~--------------------- 186 (630)
|..+.+....+... .....+.++|+|+++++.+ + .+.+++.
T Consensus 179 D~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV 257 (459)
T d1fwxa2 179 DADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 257 (459)
T ss_dssp ETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred ecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence 99888877766543 3466789999999988865 1 2344443
Q ss_pred --CCC---ceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccc------cceeeeeecCCceeeeeEEe
Q 006808 187 --SDH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------SASCVLAMEHPAVFMDCRCI 255 (630)
Q Consensus 187 --~~~---~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 255 (630)
+.. ..++.++.. .....+.++|||+|+++++.-+.++.|+|+++-... ...++......+.-.-...|
T Consensus 258 D~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f 336 (459)
T d1fwxa2 258 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF 336 (459)
T ss_dssp ECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred cccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence 211 111222212 224578999999999999988999999998653211 01111111111111112234
Q ss_pred cCCccCCCCCEEEEEecCCcEEEEEcCC
Q 006808 256 DNGGVDDAGLYVLAISETGVCYIWYGQN 283 (630)
Q Consensus 256 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 283 (630)
. ..|....+.--|..|.-|++..
T Consensus 337 d-----~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 337 D-----GRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp C-----TTSEEEEEETTTTEEEEEEHHH
T ss_pred C-----CCceEEEEeeccceEEEEecch
Confidence 3 5565444555699999999754
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.88 E-value=0.0027 Score=65.07 Aligned_cols=255 Identities=15% Similarity=0.097 Sum_probs=142.1
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC---
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--- 94 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--- 94 (630)
..++.++.||.+.-.|.++|+....+...........-+++ +.+ ...++++..
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p------------~v~------------~~~vivg~~~~~ 171 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FVA------------KDTVLMGCSGAE 171 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TTEEEEECBCGG
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecC------------eEe------------CCeEEEeecccc
Confidence 45667788999999999999987765422111110000000 000 444566553
Q ss_pred ---CCeEEEEEccCCeeeEEccCCC------------------------------------CCCE-EEEEEecCCCEEEE
Q 006808 95 ---GGDVLALAVSAGQLKWRLSDCH------------------------------------PGGV-SAISFATHGSCIYS 134 (630)
Q Consensus 95 ---~g~v~iwd~~~~~~~~~~~~~h------------------------------------~~~v-~~~~~s~~g~~l~s 134 (630)
.|.|.-+|..+|+.++++.... .+.+ ...++.+....++.
T Consensus 172 ~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~ 251 (571)
T d2ad6a1 172 LGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYY 251 (571)
T ss_dssp GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred ccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeee
Confidence 6789999999999987653110 1112 23566676666665
Q ss_pred EeC----------------CCcEEEEeCCCCceeEEeecCCCCe---------EEEEEccCCC---EEEEeC--CeEEEE
Q 006808 135 AGA----------------DGMVCEIDPLTGSLLGKFRASTKGI---------SCMAVSSDGK---MLATAA--GQLKTF 184 (630)
Q Consensus 135 ~~~----------------dg~v~iwd~~~~~~~~~~~~~~~~v---------~~l~~~p~~~---~l~~~~--g~i~lw 184 (630)
+.. ...+...|+++|+.+..++.....+ ....+..++. .++.++ |.++++
T Consensus 252 ~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vl 331 (571)
T d2ad6a1 252 GSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTL 331 (571)
T ss_dssp ECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEE
T ss_pred ecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEE
Confidence 543 2457788999999888777532221 1222233443 233444 899999
Q ss_pred ECCCCceeeEeecC-------------------------------------CCC--eEEEEEeeCCcEEEEEeeCC----
Q 006808 185 NCSDHKKMQKFSGH-------------------------------------PGA--VRFMTFSDNGKYVLSSAVGE---- 221 (630)
Q Consensus 185 d~~~~~~~~~~~~h-------------------------------------~~~--v~~l~~sp~~~~l~~~~~~d---- 221 (630)
|..+|+.+...+.. .+. -...+|+|+...+++... +
T Consensus 332 Dr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~-~~~~~ 410 (571)
T d2ad6a1 332 NRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLN-HICMD 410 (571)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEE-CEEEE
T ss_pred ecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEecc-ccccc
Confidence 99999876432110 000 012467777666655432 2
Q ss_pred ---------------------------------CeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEE
Q 006808 222 ---------------------------------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL 268 (630)
Q Consensus 222 ---------------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (630)
|.|.-+|+.+++.. .......+ ....... ..+..++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~---W~~~~~~~--~~~g~l~------TagglVf 479 (571)
T d2ad6a1 411 WEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK---WTKWEKFA--AWGGTLY------TKGGLVW 479 (571)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE---EEEEESSC--CCSBCEE------ETTTEEE
T ss_pred cccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCcee---eEcCCCCC--CCcceeE------ecCCEEE
Confidence 24555555555533 11111111 1111111 2466788
Q ss_pred EEecCCcEEEEEcCCcccccccCceeEEeeccCCCccccc
Q 006808 269 AISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK 308 (630)
Q Consensus 269 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (630)
+|+.||.++-||.++|+.+-++..........+.+..+++
T Consensus 480 ~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGk 519 (571)
T d2ad6a1 480 YATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCE
Confidence 8999999999999999998766544333333332333444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.85 E-value=0.0026 Score=65.40 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=64.3
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
.+..++.++.|.-+|..+|+.+.++............... ... .....| ...++.++.++.+
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~----~~~--~g~~~~------------~~~v~~~t~~g~l 140 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD----VVN--RGVALW------------KGKVYVGAWDGRL 140 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC----SCC--CCCEEE------------TTEEEEECTTSEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccc----ccc--ccceEE------------CCcEEEEecccce
Confidence 5666777899999999999999887532211110000000 000 000111 4567888999999
Q ss_pred EEEEccCCeeeEEccCC-CC-CCEEEEEEec--CCCEEEEEe------CCCcEEEEeCCCCceeEEe
Q 006808 99 LALAVSAGQLKWRLSDC-HP-GGVSAISFAT--HGSCIYSAG------ADGMVCEIDPLTGSLLGKF 155 (630)
Q Consensus 99 ~iwd~~~~~~~~~~~~~-h~-~~v~~~~~s~--~g~~l~s~~------~dg~v~iwd~~~~~~~~~~ 155 (630)
.-.|..+|+.++..... +. ..+. +.-.| -+..++.++ ..|.|+.+|..+|+.+-.+
T Consensus 141 ~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 206 (573)
T d1kb0a2 141 IALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (573)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred eeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence 98999999887654321 11 1110 00000 122344432 2356777887777765543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.82 E-value=0.0016 Score=66.79 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=47.3
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCCeE
Q 006808 19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV 98 (630)
Q Consensus 19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v 98 (630)
.+..++.++.|.-.|..+|+.+.++.............. . ........| +..++.++.+|.|
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~----~--~~~~~~~~~------------~~~v~~~~~~g~l 129 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCC----D--AVNRGVALW------------GDKVYVGTLDGRL 129 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTT----C--SCCCCCEEE------------BTEEEEECTTSEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccc----c--ccccCccee------------CCeEEEEeCCCEE
Confidence 455677788999999999999988753221111000000 0 000000011 4568899999999
Q ss_pred EEEEccCCeeeEEcc
Q 006808 99 LALAVSAGQLKWRLS 113 (630)
Q Consensus 99 ~iwd~~~~~~~~~~~ 113 (630)
.-.|..+|+.+....
T Consensus 130 ~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 130 IALDAKTGKAIWSQQ 144 (560)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCcEEeccC
Confidence 999999998876654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.78 E-value=0.0029 Score=60.29 Aligned_cols=192 Identities=10% Similarity=0.083 Sum_probs=115.0
Q ss_pred eEECC---CCCEEEEee-CCCcEEEEECCCCcEEEEeccccc-ccccccccccccccccccceeeEEecccccccccccC
Q 006808 11 TSFSP---ALDYFAICS-GDARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 11 ~~fs~---dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
++|.. ||+||+... .+++|.+-|+.+.++...+.-+.. .+..+.... .++
T Consensus 90 ~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~-------------------~p~------ 144 (459)
T d1fwxa2 90 MSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQK-------------------WPR------ 144 (459)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECC-------------------SSB------
T ss_pred ccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeeccc-------------------CCC------
Confidence 35544 789888776 488999999999998664432111 111111110 011
Q ss_pred CcEEEEEeCC------------------CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC---------
Q 006808 86 SSLLVLGTGG------------------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--------- 138 (630)
Q Consensus 86 ~~~l~~~~~~------------------g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--------- 138 (630)
..+++.++.. +.+.++|..+.+..+++..+ +....+.++++|+++++.+.+
T Consensus 145 T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e 222 (459)
T d1fwxa2 145 SNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPE 222 (459)
T ss_dssp CSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHH
T ss_pred eEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhh
Confidence 3344443331 23567888888887666533 456788999999998877643
Q ss_pred -----------------------------CcEEEEeCCCC---ceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEE
Q 006808 139 -----------------------------GMVCEIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT 183 (630)
Q Consensus 139 -----------------------------g~v~iwd~~~~---~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~l 183 (630)
+.+.+.|.+.. ..+..+... ...+.+.++|||+++++++ .++.+
T Consensus 223 ~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSV 301 (459)
T d1fwxa2 223 MTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTV 301 (459)
T ss_dssp HTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEE
T ss_pred cccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEE
Confidence 12233343321 122222222 2346789999999999998 79999
Q ss_pred EECCCCce-----------eeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCC
Q 006808 184 FNCSDHKK-----------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231 (630)
Q Consensus 184 wd~~~~~~-----------~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~ 231 (630)
+|+++-.. +..-....-....-+|...|. .+++-.-|..|.-|++..
T Consensus 302 iD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~-aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 302 LDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN-AYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp EEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE-EEEEETTTTEEEEEEHHH
T ss_pred EEehhhhhhhcccCCccccEEeecccCcCccccccCCCce-EEEEeeccceEEEEecch
Confidence 99864211 111111223345678888874 555555699999999854
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.76 E-value=0.0067 Score=62.30 Aligned_cols=152 Identities=15% Similarity=0.184 Sum_probs=92.4
Q ss_pred CEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeC---
Q 006808 18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--- 94 (630)
Q Consensus 18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--- 94 (630)
.+++.++.|+.|.-.|..+|+.+..+...........-+++ +.. ...++++..
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P------------~v~------------~~~vivg~~~~e 177 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP------------YVV------------KDKVIIGSSGAE 177 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TTEEEECCBCGG
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCC------------cEE------------CCeEEEeecccc
Confidence 46788888999999999999998877532211111000110 000 455666654
Q ss_pred ---CCeEEEEEccCCeeeEEccCCC------------------------------------CC-CEEEEEEecCCCEEEE
Q 006808 95 ---GGDVLALAVSAGQLKWRLSDCH------------------------------------PG-GVSAISFATHGSCIYS 134 (630)
Q Consensus 95 ---~g~v~iwd~~~~~~~~~~~~~h------------------------------------~~-~v~~~~~s~~g~~l~s 134 (630)
.|.|.-||..+|+.++++.... .. .-..+++.+....++.
T Consensus 178 ~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~ 257 (596)
T d1w6sa_ 178 LGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF 257 (596)
T ss_dssp GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred ccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeec
Confidence 4889999999999988753210 01 1124466666666666
Q ss_pred EeCC----------------CcEEEEeCCCCceeEEeecCCC---------CeEEEEE-ccCCC---EEEEeC--CeEEE
Q 006808 135 AGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAV-SSDGK---MLATAA--GQLKT 183 (630)
Q Consensus 135 ~~~d----------------g~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~-~p~~~---~l~~~~--g~i~l 183 (630)
+..+ ..+...|+.+|+.+-.++.... ....+.. ..+|+ .++.+. |.+++
T Consensus 258 ~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~v 337 (596)
T d1w6sa_ 258 GTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYT 337 (596)
T ss_dssp ECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceee
Confidence 5332 3477889999998887764221 1111221 23443 455555 89999
Q ss_pred EECCCCceee
Q 006808 184 FNCSDHKKMQ 193 (630)
Q Consensus 184 wd~~~~~~~~ 193 (630)
+|..+|+.+.
T Consensus 338 lDr~tG~~i~ 347 (596)
T d1w6sa_ 338 LDRTDGALVS 347 (596)
T ss_dssp EETTTCCEEE
T ss_pred ecCCCCceee
Confidence 9999998764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.59 E-value=0.0035 Score=57.37 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=97.5
Q ss_pred eEeEECCCCCEEEEeeC-C-----CcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEeccccccccc
Q 006808 9 ILTSFSPALDYFAICSG-D-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR 82 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~ 82 (630)
...+|||||++||..+. + ..|.+++..++.... +........ ..........|.+.
T Consensus 44 ~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~-----------~~~~~~~~~~~spd------ 105 (281)
T d1k32a2 44 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKST-----------GRRMFTDVAGFDPD------ 105 (281)
T ss_dssp EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEE-----------TTEECSEEEEECTT------
T ss_pred cCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCcc-----------CccccccccccCCC------
Confidence 44589999999997643 2 237777887776543 221111100 00112234455554
Q ss_pred ccCCcEEEEEeCCC------eEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCE-EEEEeCCC-----------cEEEE
Q 006808 83 KLGSSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADG-----------MVCEI 144 (630)
Q Consensus 83 ~~~~~~l~~~~~~g------~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg-----------~v~iw 144 (630)
++.|+...... .+...+...+..... +....... +.+++.. ++...... ....+
T Consensus 106 ---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (281)
T d1k32a2 106 ---GNLIISTDAMQPFSSMTCLYRVENDGINFVPL----NLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 177 (281)
T ss_dssp ---CCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC----CSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ---CCEEEEEEccCCCccceeeeeecCCCceeEEe----cCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeee
Confidence 44555443321 245556655554322 22222333 3344444 33322211 11111
Q ss_pred eCCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCC
Q 006808 145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE 221 (630)
Q Consensus 145 d~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d 221 (630)
........ .............+.++..+..... ..|+++|+.++... .+..+.. .....|+|||+.|+... +
T Consensus 178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~-~~~~~~SpDG~~I~f~~--~ 252 (281)
T d1k32a2 178 EVNSGAFK-KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTD-YYPRHLNTDGRRILFSK--G 252 (281)
T ss_dssp EEETTEEE-EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCE-ECCCCCS-SCEEEEEESSSCEEEEE--T
T ss_pred ecccccee-eccCCccccceeeeeccccceecccccccceEEEeCCCCceE-EeecCCC-cccccCcCCCCEEEEEe--C
Confidence 21122222 2222333445556666533222222 48899998776543 3432222 22346899999988764 6
Q ss_pred CeEEEEEcCCCccc
Q 006808 222 RYIALWRTDGVKKQ 235 (630)
Q Consensus 222 ~~i~vwd~~~~~~~ 235 (630)
+.|+++|+.+++..
T Consensus 253 ~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 253 GSIYIFNPDTEKIE 266 (281)
T ss_dssp TEEEEECTTTCCEE
T ss_pred CEEEEEECCCCCEE
Confidence 78999999888644
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.20 E-value=0.046 Score=55.54 Aligned_cols=196 Identities=13% Similarity=0.146 Sum_probs=110.6
Q ss_pred EEEEee-CCCcEEEEEC-CCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCCC
Q 006808 19 YFAICS-GDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG 96 (630)
Q Consensus 19 ~las~s-~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g 96 (630)
.+..++ .++.|.-.|. .+|+.+.++............... ... .-+++ .+..|+.++.+|
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~----~~~---rg~a~-----------~~~~i~~~~~~g 125 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD----VVD---RGLAY-----------GAGQIVKKQANG 125 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC----SCC---CCCEE-----------ETTEEEEECTTS
T ss_pred EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccC----cCC---Cccee-----------eCCeEEEEeCCC
Confidence 344444 4688888887 479999887632221111111000 000 00011 145688999999
Q ss_pred eEEEEEccCCeeeEEccCCC---CCCEEEEEEecCCCEEEEEe------CCCcEEEEeCCCCceeEEeecCC--------
Q 006808 97 DVLALAVSAGQLKWRLSDCH---PGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST-------- 159 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~-------- 159 (630)
.+.-.|..+|+..+...... ...+++--.-.++ .++.+. ..|.|+.+|+.+|+.+..+....
T Consensus 126 ~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~ 204 (571)
T d2ad6a1 126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA 204 (571)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred cEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccc
Confidence 99999999999876653211 1111111111133 444544 36789999999999887755321
Q ss_pred -----------------------------CCe-EEEEEccCCCEEEEeC------------------CeEEEEECCCCce
Q 006808 160 -----------------------------KGI-SCMAVSSDGKMLATAA------------------GQLKTFNCSDHKK 191 (630)
Q Consensus 160 -----------------------------~~v-~~l~~~p~~~~l~~~~------------------g~i~lwd~~~~~~ 191 (630)
..+ ...++.|....+..+. ..+...|+++|+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~ 284 (571)
T d2ad6a1 205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA 284 (571)
T ss_dssp TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred ccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhh
Confidence 111 2245566555554432 2577889999998
Q ss_pred eeEeecCCC---------CeEEEEEeeCCc---EEEEEeeCCCeEEEEEcCCCcc
Q 006808 192 MQKFSGHPG---------AVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 192 ~~~~~~h~~---------~v~~l~~sp~~~---~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
+-.+..+.. +.....+..+++ .++..+ .+|.++++|..+++.
T Consensus 285 ~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~-k~G~l~vlDr~tG~~ 338 (571)
T d2ad6a1 285 KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNL 338 (571)
T ss_dssp EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCE
T ss_pred eecccccCccccccccccccceeeeeccCccccceeecc-ccceEEEEecCCCcE
Confidence 877753221 122223334454 234444 689999999888764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.19 E-value=0.072 Score=47.78 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=119.1
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CceeEEeecCC----C
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K 160 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~----~ 160 (630)
...|+.-+ ...+.+||+.+.+.+..+. ...+|.--.|-.+ +.|+-.+ +..|+-|++.. ..+.+.|.-|. .
T Consensus 74 ~~IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~ 148 (327)
T d1utca2 74 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 148 (327)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred CcEEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCc
Confidence 44555554 5679999999999887764 3456776777644 4555553 45699999953 35666666554 3
Q ss_pred CeEEEEEccCCCEEEEeC---------CeEEEEECCCCceeeEeecCCCCeEEEEEe--eCCcEEEEE---eeCCCeEEE
Q 006808 161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSS---AVGERYIAL 226 (630)
Q Consensus 161 ~v~~l~~~p~~~~l~~~~---------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~l~~~---~~~d~~i~v 226 (630)
.|-.-..++++++++..+ |.+.+|..+.+ ..+.+.||.+.-..+.+. +....+++- +...+.+++
T Consensus 149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhI 227 (327)
T d1utca2 149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 227 (327)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEE
Confidence 677778889999988765 68999998655 345566665433333221 111112221 112358999
Q ss_pred EEcCCCcc--cc--ceee-eeec--CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 227 WRTDGVKK--QS--ASCV-LAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 227 wd~~~~~~--~~--~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
.++..... .. .+.. ..++ ....+.-.+-.+ +.-..+...+.-|.+++||+.++..+...+
T Consensus 228 iEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs-----~kygiiyviTK~G~i~lyDleTgt~i~~nR 294 (327)
T d1utca2 228 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR 294 (327)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee-----ccCCEEEEEecCcEEEEEEcccccEEEEee
Confidence 99876421 10 1111 1111 123333333333 555778888999999999999998876543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.14 E-value=0.083 Score=47.51 Aligned_cols=189 Identities=9% Similarity=-0.006 Sum_probs=113.4
Q ss_pred CcEEEEEe-CCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~-~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
.+.|+... ..+.|...++..+... .+.......+.++++..-++.|+ +-...+.|.+.++....+...+......+.
T Consensus 47 ~~~iywsd~~~~~I~~~~l~g~~~~-~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~ 125 (263)
T d1npea_ 47 DKVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR 125 (263)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred CCEEEEEECCCCeEEEEEcccCCcE-EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCc
Confidence 34455544 4566888888765443 33323335789999987666665 445677999999875554333333345788
Q ss_pred EEEEccCCCEEEEeC---C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccce
Q 006808 164 CMAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~---g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~ 238 (630)
.++++|...++.... + .|.-.++............-....++++.+.++.|+.+....+.|...++......
T Consensus 126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~--- 202 (263)
T d1npea_ 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--- 202 (263)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---
T ss_pred EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE---
Confidence 999999766666543 2 35555664433322222233466899999888888777656788999998765432
Q ss_pred eeeeecCCceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCccccc
Q 006808 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELR 288 (630)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~ 288 (630)
.+.. .......+..+ +.+|... ...+.|...|..+++.+.
T Consensus 203 ~v~~--~~~~P~~lav~--------~~~lYwtd~~~~~I~~~~~~~g~~~~ 243 (263)
T d1npea_ 203 KVLE--GLQYPFAVTSY--------GKNLYYTDWKTNSVIAMDLAISKEMD 243 (263)
T ss_dssp EEEE--CCCSEEEEEEE--------TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEC--CCCCcEEEEEE--------CCEEEEEECCCCEEEEEECCCCccce
Confidence 2222 11122233222 3445444 456788888887766543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.10 E-value=0.088 Score=47.20 Aligned_cols=229 Identities=13% Similarity=0.160 Sum_probs=133.9
Q ss_pred cceeEeEECCCCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
+.+=++-.+|..+.+|.=+ ..++.|||+++.+.++.+.-. .++.-..|...
T Consensus 63 i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-------------------e~VvfWkWis~--------- 113 (327)
T d1utca2 63 ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------------DDVTFWKWISL--------- 113 (327)
T ss_dssp CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-------------------SCCCEEEESSS---------
T ss_pred cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-------------------CCcEEEEecCC---------
Confidence 3333445788888888766 458999999999888766421 23444556653
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCC----CCEEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCceeEE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGK 154 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~----~~v~~~~~s~~g~~l~s~~-------~dg~v~iwd~~~~~~~~~ 154 (630)
+.|+..+ +..|+-|++.........+..|. ..|..-..++++++++..| -.|.+.+|..+. +.-+.
T Consensus 114 -~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ 190 (327)
T d1utca2 114 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQP 190 (327)
T ss_dssp -SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEE
T ss_pred -CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCcc
Confidence 3444444 34699999965433333333343 4688888888999866543 236788888764 34456
Q ss_pred eecCCCCeEEEEEccC---CCEEEEeC-----CeEEEEECCCCc---e---ee--Ee--ec--CCCCeEEEEEeeCCcEE
Q 006808 155 FRASTKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDHK---K---MQ--KF--SG--HPGAVRFMTFSDNGKYV 214 (630)
Q Consensus 155 ~~~~~~~v~~l~~~p~---~~~l~~~~-----g~i~lwd~~~~~---~---~~--~~--~~--h~~~v~~l~~sp~~~~l 214 (630)
+.+|.+....+.+.-+ ...++.+. +.+++.++.... . .+ .+ +. ...-.-++..++....+
T Consensus 191 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygii 270 (327)
T d1utca2 191 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 270 (327)
T ss_dssp ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEE
T ss_pred ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEE
Confidence 7776554444433211 12333332 588888886521 1 01 11 11 12234567778776666
Q ss_pred EEEeeCCCeEEEEEcCCCccccceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCCcEE
Q 006808 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY 277 (630)
Q Consensus 215 ~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~ 277 (630)
+... .-|.|++||+.++... ....+.....++.+ .. .+..=+++...+|.|.
T Consensus 271 yviT-K~G~i~lyDleTgt~i---~~nRIs~~~iF~~a--~~-----~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 271 FLIT-KYGYIHLYDLETGTCI---YMNRISGETIFVTA--PH-----EATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEEE-TTSEEEEEETTTCCEE---EEEECCSSCEEEEE--EE-----TTTTEEEEEETTSEEE
T ss_pred EEEe-cCcEEEEEEcccccEE---EEeecCCCceEEec--cC-----CCCceEEEECCCCeEE
Confidence 6666 6899999999998743 22223333333222 22 3344455666777654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.10 E-value=0.09 Score=47.26 Aligned_cols=195 Identities=10% Similarity=-0.060 Sum_probs=112.6
Q ss_pred eEeEECCCCCEEEEee-CCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCc
Q 006808 9 ILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS 87 (630)
Q Consensus 9 ~~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 87 (630)
..++|++.++.+.... .++.|+..++..+.....+..... .....++.|. +.
T Consensus 39 ~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~----------------~p~~iAvD~~-----------~~ 91 (263)
T d1npea_ 39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG----------------SPEGIALDHL-----------GR 91 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC----------------CEEEEEEETT-----------TT
T ss_pred EEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc----------------cccEEEEecc-----------CC
Confidence 3457887776666554 456777777765443332221100 1112233332 33
Q ss_pred EEE-EEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeC-CC--cEEEEeCCCCceeEEeecCCCCeE
Q 006808 88 LLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 88 ~l~-~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
.|+ +-...+.|.+.++...... .+....-..+..+++.|...+++-... .+ .|..-++............-....
T Consensus 92 ~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~ 170 (263)
T d1npea_ 92 TIFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN 170 (263)
T ss_dssp EEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEE
T ss_pred eEEEeccCCCEEEEEecCCceEE-EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccc
Confidence 344 4445677999998765543 232233457899999997777654432 22 354456654333333333334668
Q ss_pred EEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCcc
Q 006808 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~ 234 (630)
.+++.+.+..|..+. +.|...++........+.+... ..+|++. +.+|+.+....+.|...|..+++.
T Consensus 171 glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~ 241 (263)
T d1npea_ 171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE 241 (263)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence 999998777776654 7899999865544333444333 3577775 455666654577888888887763
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.98 E-value=0.078 Score=53.96 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=33.8
Q ss_pred CCCCEEEEEecCCcEEEEEcCCcccccccCceeEEeeccCCCcccccc
Q 006808 262 DAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS 309 (630)
Q Consensus 262 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (630)
..+..|++|+.||.++.||..+|+.+-+++.........+.+..++++
T Consensus 495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 356788889999999999999999987766544443333334445543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.87 E-value=0.073 Score=54.24 Aligned_cols=221 Identities=10% Similarity=0.098 Sum_probs=122.2
Q ss_pred CCCcccceeEeEECC---------------CCCEEEEeeCCCcEEEEEC-CCCcEEEEeccccccccccccccccccccc
Q 006808 1 MGSSNIRDILTSFSP---------------ALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHL 64 (630)
Q Consensus 1 ~~s~~V~~~~~~fs~---------------dg~~las~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 64 (630)
|++..|..|.++|+- +|.++++++.++.+...|. .+|+.+..+...........-..
T Consensus 32 I~~~Nv~~L~~aW~~~~~~~~~~~~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~------- 104 (596)
T d1w6sa_ 32 INKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACC------- 104 (596)
T ss_dssp SCTTTGGGEEEEEEEECSCCSCCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSS-------
T ss_pred cCHhHhhhceEEEEEECCCCCCceeCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCccccccccc-------
Confidence 355666666666641 2334444555678888886 58999988763222111000000
Q ss_pred ccceeeEEecccccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCC---CCEEEEEEecCCCEEEEEeC----
Q 006808 65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSCIYSAGA---- 137 (630)
Q Consensus 65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~s~~~---- 137 (630)
.....-+++.+.+.. ....|+.++.++.|.-.|..+|+.++.+..+.. ..+++--.- -+..++.+..
T Consensus 105 ~~~~RGv~~~~~~~~-----~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~ 178 (596)
T d1w6sa_ 105 DLVNRGLAYWPGDGK-----TPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAEL 178 (596)
T ss_dssp CSCCCCCEEECCCSS-----SCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGG
T ss_pred ccccceeEEecCCCC-----CceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE-ECCeEEEeeccccc
Confidence 000011111111111 145789999999999999999999877643211 111110001 1335555542
Q ss_pred --CCcEEEEeCCCCceeEEeecCC-------------------------------------C-CeEEEEEccCCCEEEEe
Q 006808 138 --DGMVCEIDPLTGSLLGKFRAST-------------------------------------K-GISCMAVSSDGKMLATA 177 (630)
Q Consensus 138 --dg~v~iwd~~~~~~~~~~~~~~-------------------------------------~-~v~~l~~~p~~~~l~~~ 177 (630)
.|.|+-+|+.+|+.+-++.... . .-..+++.+...++..+
T Consensus 179 ~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~ 258 (596)
T d1w6sa_ 179 GVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFG 258 (596)
T ss_dssp TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEE
T ss_pred cccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecc
Confidence 4889999999999987765211 0 11234556655555554
Q ss_pred C------------------CeEEEEECCCCceeeEeec--CCC-------CeEEEEE-eeCCc---EEEEEeeCCCeEEE
Q 006808 178 A------------------GQLKTFNCSDHKKMQKFSG--HPG-------AVRFMTF-SDNGK---YVLSSAVGERYIAL 226 (630)
Q Consensus 178 ~------------------g~i~lwd~~~~~~~~~~~~--h~~-------~v~~l~~-sp~~~---~l~~~~~~d~~i~v 226 (630)
. ..|.-.|+.+|+.+-.++. |.. ...-+.. ..+|+ .++... .+|.+.+
T Consensus 259 tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~-k~G~~~v 337 (596)
T d1w6sa_ 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVYT 337 (596)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc-cccceee
Confidence 2 2477889999998776652 211 1111121 22332 344444 6889999
Q ss_pred EEcCCCccc
Q 006808 227 WRTDGVKKQ 235 (630)
Q Consensus 227 wd~~~~~~~ 235 (630)
+|..+++..
T Consensus 338 lDr~tG~~i 346 (596)
T d1w6sa_ 338 LDRTDGALV 346 (596)
T ss_dssp EETTTCCEE
T ss_pred ecCCCCcee
Confidence 999888744
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.21 Score=44.75 Aligned_cols=188 Identities=9% Similarity=-0.062 Sum_probs=108.2
Q ss_pred cEEEEEe-CCCeEEEEEccCCe---eeEEccCCCCCCEEEEEEecCCCEEEEE-eCCCcEEEEeCCCCceeEEeecCCCC
Q 006808 87 SLLVLGT-GGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKG 161 (630)
Q Consensus 87 ~~l~~~~-~~g~v~iwd~~~~~---~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~ 161 (630)
+.|+... ..+.|.-.++.... ....+.......+.++++.+.++.|+.+ ...+.|.+.++........+......
T Consensus 42 ~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~ 121 (266)
T d1ijqa1 42 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121 (266)
T ss_dssp TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred CEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCC
Confidence 3344443 44556655554321 1112222233457789998766665554 46678999998866655555555567
Q ss_pred eEEEEEccCCCEEEEeC----CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccc
Q 006808 162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237 (630)
Q Consensus 162 v~~l~~~p~~~~l~~~~----g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~ 237 (630)
...++++|...+|.... +.|.-.++............-....++++.+.+..|+.+....+.|...++......
T Consensus 122 P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-- 199 (266)
T d1ijqa1 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-- 199 (266)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--
T ss_pred cceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE--
Confidence 89999999655555443 467777775443332233333567899999988888887666789999998765422
Q ss_pred eeeeeecC-CceeeeeEEecCCccCCCCCEEEEE-ecCCcEEEEEcCCcc
Q 006808 238 SCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIE 285 (630)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~ 285 (630)
.+..... ......+..+ +.+|... ..++.|+..+..++.
T Consensus 200 -~~~~~~~~~~~p~~lav~--------~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 200 -TILEDEKRLAHPFSLAVF--------EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp -EEEECTTTTSSEEEEEEE--------TTEEEEEETTTTEEEEEETTTCC
T ss_pred -EEEeCCCcccccEEEEEE--------CCEEEEEECCCCeEEEEECCCCc
Confidence 2222221 1222333322 3444444 456777777766654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.24 E-value=0.21 Score=47.40 Aligned_cols=104 Identities=8% Similarity=0.006 Sum_probs=59.3
Q ss_pred CcEEEEEeCC-CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC------CcEEEEeCCCCceeEEeec-
Q 006808 86 SSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGKFRA- 157 (630)
Q Consensus 86 ~~~l~~~~~~-g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------g~v~iwd~~~~~~~~~~~~- 157 (630)
+.+++.|+.+ ..+.+||+.++.....-.......-.+.+..++|+.++.++.+ ..+.+||..+.+-. .+..
T Consensus 87 g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~ 165 (387)
T d1k3ia3 87 GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNA 165 (387)
T ss_dssp SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTS
T ss_pred CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee-ecCCC
Confidence 6666666555 4699999998876422211112223456677799988888743 36899998765421 1110
Q ss_pred ---------CC-----CCeEEEEEccCCCEEEEeC--CeEEEEECCCCc
Q 006808 158 ---------ST-----KGISCMAVSSDGKMLATAA--GQLKTFNCSDHK 190 (630)
Q Consensus 158 ---------~~-----~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~~~ 190 (630)
+. ..-..+...++|+.+..+. +.+.+++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 214 (387)
T d1k3ia3 166 KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 214 (387)
T ss_dssp CSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred cccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence 00 0011123345666666665 566677766654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.5 Score=42.14 Aligned_cols=145 Identities=7% Similarity=-0.081 Sum_probs=89.7
Q ss_pred CcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEe--CCCcEEEEeCCCCceeEEeecCCCCeE
Q 006808 86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGIS 163 (630)
Q Consensus 86 ~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~ 163 (630)
+.+..+-...+.|.+.++......... ........++++.|...+++-.. ..+.|...++............-....
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~-~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~ 167 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred ceEEEEecCCCEEEeEecCCceEEEEE-cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceee
Confidence 334444445677999998876544333 23456789999999666655443 345677777754433333333335678
Q ss_pred EEEEccCCCEEEEeC---CeEEEEECCCCceeeEeecC--CCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCc
Q 006808 164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233 (630)
Q Consensus 164 ~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~ 233 (630)
.+++.+.+..|..+. +.|...++............ .....++++. +.+|+.+...++.|...+..++.
T Consensus 168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence 999999877777665 78999998654433223222 2345567766 44566655467788887776654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.94 E-value=0.32 Score=45.98 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=68.7
Q ss_pred CcEEEEEeCC-----C------eEEEEEccCCeeeE--EccCCCCCCEEEEEEecCCCEEEEEeCC-CcEEEEeCCCCce
Q 006808 86 SSLLVLGTGG-----G------DVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGAD-GMVCEIDPLTGSL 151 (630)
Q Consensus 86 ~~~l~~~~~~-----g------~v~iwd~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~v~iwd~~~~~~ 151 (630)
+++++.|+.. + .+.+||+.++.... .....|.....+.++.++|..++.|+.+ ..+.+||..+..-
T Consensus 31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w 110 (387)
T d1k3ia3 31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 110 (387)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence 6677777742 1 27799999876421 2222344444566788999988888755 5899999877643
Q ss_pred eEEeec-CCCCeEEEEEccCCCEEEEeC--------CeEEEEECCCCc
Q 006808 152 LGKFRA-STKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHK 190 (630)
Q Consensus 152 ~~~~~~-~~~~v~~l~~~p~~~~l~~~~--------g~i~lwd~~~~~ 190 (630)
...-.. ....-.+.+..++|++++.++ ..+.+||..+.+
T Consensus 111 ~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 111 IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 321111 112335677788999999886 368999998764
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.91 E-value=0.57 Score=43.43 Aligned_cols=192 Identities=14% Similarity=0.187 Sum_probs=107.9
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccCCcEEEEEeCC
Q 006808 16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG 95 (630)
Q Consensus 16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~ 95 (630)
+..+++.....+-|.+||+. |+.+..+.. +.++.+-... -++...+ ..-+++++..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~---------------~~~l~~~------~~di~vasnR 94 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRY---------------DFPLNGK------KVDIAAASNR 94 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEE---------------EEEETTE------EEEEEEEEEC
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCcccccc---------------ccccCCc------ceEEEEEeCC
Confidence 44566666666679999985 887766542 1111110000 0001110 2234455532
Q ss_pred --C--eEEEEEccCC-eeeEEccCC------CCCCEEEEEE--ecC-CC-EEEEEeCCCcEEEEeCC---CC----ceeE
Q 006808 96 --G--DVLALAVSAG-QLKWRLSDC------HPGGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL---TG----SLLG 153 (630)
Q Consensus 96 --g--~v~iwd~~~~-~~~~~~~~~------h~~~v~~~~~--s~~-g~-~l~s~~~dg~v~iwd~~---~~----~~~~ 153 (630)
+ +|.+|.+... ..+..+... -...+.++|+ ++. |. ++++...+|.+..|.+. .+ +.++
T Consensus 95 ~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr 174 (353)
T d1h6la_ 95 SEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR 174 (353)
T ss_dssp CTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE
T ss_pred cCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeee
Confidence 2 4778877532 222222111 0123667777 554 44 46667788999888763 22 3455
Q ss_pred EeecCCCCeEEEEEccCCCEEEEeC--CeEEEEECCC-----CceeeEeec--CCCCeEEEEEeeC--C-cEEEEEeeCC
Q 006808 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSDN--G-KYVLSSAVGE 221 (630)
Q Consensus 154 ~~~~~~~~v~~l~~~p~~~~l~~~~--g~i~lwd~~~-----~~~~~~~~~--h~~~v~~l~~sp~--~-~~l~~~~~~d 221 (630)
.|.. ...+..|.+.+....|..+- .-|+.++... +..+....+ ....+-.|+.-.. + .||++++..+
T Consensus 175 ~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~ 253 (353)
T d1h6la_ 175 AFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN 253 (353)
T ss_dssp EEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred ccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence 6653 45788999999888888886 3444455432 122222222 3567888876543 3 3888887778
Q ss_pred CeEEEEEcCCC
Q 006808 222 RYIALWRTDGV 232 (630)
Q Consensus 222 ~~i~vwd~~~~ 232 (630)
++..+||....
T Consensus 254 n~f~vydr~~~ 264 (353)
T d1h6la_ 254 SSYAIYERQGQ 264 (353)
T ss_dssp TEEEEEESSTT
T ss_pred CeEEEEecCCC
Confidence 89999998764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.81 E-value=0.89 Score=43.71 Aligned_cols=195 Identities=11% Similarity=0.083 Sum_probs=102.1
Q ss_pred eEECCCCCEEEEee-C----CCcEEEEECCCCcEEEEecccccccccccccccccccccccceeeEEecccccccccccC
Q 006808 11 TSFSPALDYFAICS-G----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG 85 (630)
Q Consensus 11 ~~fs~dg~~las~s-~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 85 (630)
.++||||+++|.+- . -.+|+++|+.+|+.+...-. ......+.|.+.
T Consensus 130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-------------------~~~~~~~~W~~D--------- 181 (430)
T d1qfma1 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------------------RVKFSCMAWTHD--------- 181 (430)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------------------EECSCCEEECTT---------
T ss_pred eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-------------------cccccceEEcCC---------
Confidence 47899999998542 2 34699999999987642110 011134556554
Q ss_pred CcEEEEEeC----------------CCeEEEEEccCCeee--EEccC-CCCCCEEEEEEecCCCEEEEEe---CCCcEEE
Q 006808 86 SSLLVLGTG----------------GGDVLALAVSAGQLK--WRLSD-CHPGGVSAISFATHGSCIYSAG---ADGMVCE 143 (630)
Q Consensus 86 ~~~l~~~~~----------------~g~v~iwd~~~~~~~--~~~~~-~h~~~v~~~~~s~~g~~l~s~~---~dg~v~i 143 (630)
+..|+.... ...|..|.+.+.... ..+.. .....+..+..++++++++... .+....+
T Consensus 182 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~ 261 (430)
T d1qfma1 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRL 261 (430)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEE
T ss_pred CCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEE
Confidence 333333221 124778877765321 11111 1234577788899999866432 2333344
Q ss_pred E--eCCCCc--------eeEEeecCCCCeEEEEEccCCCEEEEeC-----CeEEEEECCCCce--eeEe-ecCCCCeEEE
Q 006808 144 I--DPLTGS--------LLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKF-SGHPGAVRFM 205 (630)
Q Consensus 144 w--d~~~~~--------~~~~~~~~~~~v~~l~~~p~~~~l~~~~-----g~i~lwd~~~~~~--~~~~-~~h~~~v~~l 205 (630)
| |+.... ....+......+.- ..+.++.+++... +.|...++..... ...+ ..+...+..-
T Consensus 262 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~ 340 (430)
T d1qfma1 262 WYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEW 340 (430)
T ss_dssp EEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEE
T ss_pred EEeeCCCcccccccccceeEeecccccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeee
Confidence 4 543221 11122222223322 2233344444443 5677777765432 2333 3344555554
Q ss_pred EEeeCCcEEEEEeeCCC--eEEEEEcCCCcc
Q 006808 206 TFSDNGKYVLSSAVGER--YIALWRTDGVKK 234 (630)
Q Consensus 206 ~~sp~~~~l~~~~~~d~--~i~vwd~~~~~~ 234 (630)
.+...+.+|+..-..++ .|+++++.++..
T Consensus 341 ~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~ 371 (430)
T d1qfma1 341 VACVRSNFLVLCYLHDVKNTLQLHDLATGAL 371 (430)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EEEEECCEEEEEEEcCCEeEEEEEECCCCcE
Confidence 55555667766554454 588899887653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.71 E-value=0.77 Score=45.96 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=81.9
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC-----------------------------------EEEEEEecCCCE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-----------------------------------VSAISFATHGSC 131 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~-----------------------------------v~~~~~s~~g~~ 131 (630)
..++.++.+|.+.++|..+|+.+.......... -...+++|+...
T Consensus 315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~ 394 (560)
T d1kv9a2 315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (560)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence 467778889999999999998865442211100 014567777666
Q ss_pred EEEEeC------------------------------------CCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEE
Q 006808 132 IYSAGA------------------------------------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175 (630)
Q Consensus 132 l~s~~~------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~ 175 (630)
++.... .|.+.-||+.+++.+-.+.... +..+-.+.-.+.+++
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF 473 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVF 473 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEE
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEE
Confidence 655432 2568889999998877655322 222212222455666
Q ss_pred EeC--CeEEEEECCCCceeeEeecCCC-CeEEEEEeeCCc-EEEEEe
Q 006808 176 TAA--GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGK-YVLSSA 218 (630)
Q Consensus 176 ~~~--g~i~lwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~-~l~~~~ 218 (630)
+++ |.++.+|..+|+.+-++.-... .-.-+.|..+|+ |+++.+
T Consensus 474 ~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a 520 (560)
T d1kv9a2 474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (560)
T ss_dssp EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 776 8999999999999988763321 111256667886 444443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.52 E-value=0.47 Score=47.82 Aligned_cols=146 Identities=11% Similarity=0.078 Sum_probs=81.4
Q ss_pred cEEEEEeCCCeEEEEEccCCeeeEEccCCCCCC----------------------------------EEEEEEecCCCEE
Q 006808 87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG----------------------------------VSAISFATHGSCI 132 (630)
Q Consensus 87 ~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~----------------------------------v~~~~~s~~g~~l 132 (630)
..++.++.+|.+.++|..+|+.+.......... -..++++|+...+
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~ 407 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence 467888899999999999998765432110000 1124677777777
Q ss_pred EEEeCCCcEEEEeCCCCceeEEeecCC--C-CeEEEEEccCCCEEEEeC-CeEEEEECCCCceeeEeecCCCCeEEEEEe
Q 006808 133 YSAGADGMVCEIDPLTGSLLGKFRAST--K-GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208 (630)
Q Consensus 133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~--~-~v~~l~~~p~~~~l~~~~-g~i~lwd~~~~~~~~~~~~h~~~v~~l~~s 208 (630)
+....+....++.....+......... + ......+ +.+.-..... |.+.-||+.+++.+-+.+... +...=..+
T Consensus 408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~ls 485 (573)
T d1kb0a2 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLT 485 (573)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEE
T ss_pred EeeccccceeeecccccccccCCCCccccccccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEE
Confidence 766666555555544322111111000 0 0000011 0010000011 688999999999887765332 22211234
Q ss_pred eCCcEEEEEeeCCCeEEEEEcCCCccc
Q 006808 209 DNGKYVLSSAVGERYIALWRTDGVKKQ 235 (630)
Q Consensus 209 p~~~~l~~~~~~d~~i~vwd~~~~~~~ 235 (630)
-.+..+++++ .|+.++.+|..+++..
T Consensus 486 tagglVF~G~-~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 486 TAGNVVFQGT-ADGRLVAYHAATGEKL 511 (573)
T ss_dssp ETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred EcCCEEEEEC-CCCeEEEEECCCCcEe
Confidence 4566777766 6999999999999865
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.14 E-value=0.29 Score=45.63 Aligned_cols=138 Identities=12% Similarity=0.089 Sum_probs=82.4
Q ss_pred CCeEEEEEccCCeeeE---EccCC----CCCCEEEEEE--ecCCCE-EEEEe---CCCcEEEEeCCCCc--e--eEEeec
Q 006808 95 GGDVLALAVSAGQLKW---RLSDC----HPGGVSAISF--ATHGSC-IYSAG---ADGMVCEIDPLTGS--L--LGKFRA 157 (630)
Q Consensus 95 ~g~v~iwd~~~~~~~~---~~~~~----h~~~v~~~~~--s~~g~~-l~s~~---~dg~v~iwd~~~~~--~--~~~~~~ 157 (630)
.|.|.++|+.+..... .+... ..-...++.+ .++|.. |++.. ...+|.+|++.... . +.++..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 4889999987654321 11111 1123455554 345654 55543 45578888775332 1 122222
Q ss_pred C-CCCeEEEEEccCCCEEEEeC-----------------CeEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee
Q 006808 158 S-TKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219 (630)
Q Consensus 158 ~-~~~v~~l~~~p~~~~l~~~~-----------------g~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~ 219 (630)
. ......+++..++.++++-. +...+|....+.. ......-...+.|+++|++++|+++..
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeC
Confidence 2 23578899999998888832 1334444444433 222223345789999999999988887
Q ss_pred CCCeEEEEEcCCCc
Q 006808 220 GERYIALWRTDGVK 233 (630)
Q Consensus 220 ~d~~i~vwd~~~~~ 233 (630)
..+.|++|++....
T Consensus 226 ~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 226 LAHKIHVYEKHANW 239 (340)
T ss_dssp GGTEEEEEEECTTS
T ss_pred CCCeEEEEEeCCCc
Confidence 78899999987654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.99 E-value=1.4 Score=40.75 Aligned_cols=199 Identities=15% Similarity=0.187 Sum_probs=105.0
Q ss_pred eEEeccc-ccccccccCCcEEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEec----CCC--EEEEEe-C-CC-
Q 006808 70 CMKWLSV-DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT----HGS--CIYSAG-A-DG- 139 (630)
Q Consensus 70 ~~~w~~~-~~~~~~~~~~~~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~----~g~--~l~s~~-~-dg- 139 (630)
...|..+ +|. .++|+.....+-|.+||+. |+.+..+. .+.+..+..-. .++ .++.++ . ++
T Consensus 29 PAIW~n~~~p~------~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~ 98 (353)
T d1h6la_ 29 PAIWLDPKNPQ------NSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK 98 (353)
T ss_dssp EEEECCSSCGG------GCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTT
T ss_pred ceEEcCCCCcC------ccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcc
Confidence 3456544 443 4555555566669999986 66664543 35666655432 222 244554 2 22
Q ss_pred -cEEEEeCCC-CceeEEeecC-------CCCeEEEEE--ccC-CCEEEE-eC--CeEEEEEC---CCC----ceeeEeec
Q 006808 140 -MVCEIDPLT-GSLLGKFRAS-------TKGISCMAV--SSD-GKMLAT-AA--GQLKTFNC---SDH----KKMQKFSG 197 (630)
Q Consensus 140 -~v~iwd~~~-~~~~~~~~~~-------~~~v~~l~~--~p~-~~~l~~-~~--g~i~lwd~---~~~----~~~~~~~~ 197 (630)
+|.+|.+.. ...+..+... ...++.+|+ +|. |.+.+. .. |.+..|.+ .++ +.+++|.
T Consensus 99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~- 177 (353)
T d1h6la_ 99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK- 177 (353)
T ss_dssp CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-
T ss_pred eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-
Confidence 577787642 2233333221 124667777 664 554443 33 77777755 333 2445554
Q ss_pred CCCCeEEEEEeeCCcEEEEEeeCCCeEEEEEcCCCccccceeeeeec--C-CceeeeeEEecCCccCCC-CCEEEEEec-
Q 006808 198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--H-PAVFMDCRCIDNGGVDDA-GLYVLAISE- 272 (630)
Q Consensus 198 h~~~v~~l~~sp~~~~l~~~~~~d~~i~vwd~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~-~~~l~s~s~- 272 (630)
-...+..|.+......|+.+- ++.-|+.++...........+.... + ...+-.+..+. ..+ ..+|++.+.
T Consensus 178 ~~~q~EGCVvDde~~~LyisE-E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~----~~~~~GylivSsQG 252 (353)
T d1h6la_ 178 MNSQTEGMAADDEYGSLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYY----AADGKGYLLASSQG 252 (353)
T ss_dssp CSSCEEEEEEETTTTEEEEEE-TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEE----CGGGCEEEEEEEGG
T ss_pred CCCccceEEEeCCCCcEEEec-CccceEEEEeccCCCccceeeecccCccccCCccccEEEE----cCCCCeEEEEEcCC
Confidence 345788999999888888875 5666655655432211111121111 1 12222222221 022 336655554
Q ss_pred CCcEEEEEcCCc
Q 006808 273 TGVCYIWYGQNI 284 (630)
Q Consensus 273 dg~i~iwd~~~~ 284 (630)
+++..|||..+.
T Consensus 253 ~n~f~vydr~~~ 264 (353)
T d1h6la_ 253 NSSYAIYERQGQ 264 (353)
T ss_dssp GTEEEEEESSTT
T ss_pred CCeEEEEecCCC
Confidence 778999997653
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=1.8 Score=38.40 Aligned_cols=172 Identities=9% Similarity=-0.031 Sum_probs=74.2
Q ss_pred eEEEEEccCCeeeEEc--cCCCCCCEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCceeEEeecCCC-CeEEEEEc
Q 006808 97 DVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFRASTK-GISCMAVS 168 (630)
Q Consensus 97 ~v~iwd~~~~~~~~~~--~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~ 168 (630)
.+.+||+.+......- ..+.. .-.++.+ +++.++.++.++ .+..+|..+..-...-..... .-.++...
T Consensus 71 ~~~~yd~~~~~w~~~~~~p~~r~-~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 147 (288)
T d1zgka1 71 ALDCYNPMTNQWSPCAPMSVPRN-RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 147 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCB-TCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred hhhhcccccccccccccccceec-ceecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee
Confidence 4788998877653211 11111 1122222 555555554433 344466655432211111111 11122222
Q ss_pred cCCCEEEEeC-------CeEEEEECCCCceeeEeecCCC--CeEEEEEeeCCcEEEEEeeCC----CeEEEEEcCCCccc
Q 006808 169 SDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKKQ 235 (630)
Q Consensus 169 p~~~~l~~~~-------g~i~lwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l~~~~~~d----~~i~vwd~~~~~~~ 235 (630)
++.+++.|+ ..+..||..+.+... ...... ...++. ...+..++.++... .....+|..+....
T Consensus 148 -~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~ 224 (288)
T d1zgka1 148 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWT 224 (288)
T ss_dssp -TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred -eecceEecCcccccccceEEEeecccccccc-cccccccccccccc-ceeeeEEEecCccccccccceeeeeecceeee
Confidence 344555554 367888887765322 111111 111222 23455555544211 24567777665422
Q ss_pred cceeeeeecCCceeeeeEEecCCccCCCCCEEEEEecCC-----cEEEEEcCCc
Q 006808 236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI 284 (630)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~ 284 (630)
............. ++. .+++.++.|+.++ .+.+||+.+.
T Consensus 225 ---~~~~~p~~r~~~~-~~~------~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 225 ---FVAPMKHRRSALG-ITV------HQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp ---ECCCCSSCCBSCE-EEE------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ---cccCccCcccceE-EEE------ECCEEEEEecCCCCeecceEEEEECCCC
Confidence 1111111111111 222 3567777776544 3677887654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.95 E-value=0.45 Score=48.05 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=55.4
Q ss_pred CeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCC-CeEEEEEccCCCE
Q 006808 96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKM 173 (630)
Q Consensus 96 g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~~~~ 173 (630)
|.|.-+|+.+|+.+++...++ ++.+-..+..|..+++|+.||.++.+|..+|+.+..++.... .-.-+.|..+|+.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 678889999999988875432 333323345677888999999999999999999998875433 1122567778864
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.62 E-value=2.7 Score=38.64 Aligned_cols=130 Identities=9% Similarity=0.006 Sum_probs=73.2
Q ss_pred EEEEEe---CCCeEEEEEccCCe--e--eEEccCCCCCCEEEEEEecCCCEEEEEe--C-C------------CcEEEEe
Q 006808 88 LLVLGT---GGGDVLALAVSAGQ--L--KWRLSDCHPGGVSAISFATHGSCIYSAG--A-D------------GMVCEID 145 (630)
Q Consensus 88 ~l~~~~---~~g~v~iwd~~~~~--~--~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~-d------------g~v~iwd 145 (630)
.|++.. ...+|.+|++.... . +..+........+++++..+|.+++|-. . + ++..+|.
T Consensus 113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~ 192 (340)
T d1v04a_ 113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 192 (340)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence 444443 34558888875432 2 1222223335689999999998777731 1 0 2233444
Q ss_pred CCCCceeEEeecCCCCeEEEEEccCCCEEEEeC---CeEEEEECCCCceeeEe--ecCCCCeEEEEEeeCCcEEEEEe
Q 006808 146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 146 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~---g~i~lwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
...++...... .-.....++++|++++|+++. +.|+.|++.....+... ..-.+..-.+.+.+.+..+.+++
T Consensus 193 ~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 193 YSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp ECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EcCCceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 33333322222 234578999999999888876 79999998754322221 11234455677765443444444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=6.6 Score=36.32 Aligned_cols=126 Identities=6% Similarity=-0.058 Sum_probs=71.9
Q ss_pred EEEEEeCCCeEEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEee-----cCCCCe
Q 006808 88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTKGI 162 (630)
Q Consensus 88 ~l~~~~~~g~v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v 162 (630)
.+++. .++.+..++...-...... ..-..++.++.++|. .++....++.+.++++..++...... ...+.+
T Consensus 98 ~l~v~-~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~ 173 (381)
T d1xipa_ 98 QVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ 173 (381)
T ss_dssp EEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE
T ss_pred EEEEE-eCCCEEEEEeecccccccc-ccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCc
Confidence 34444 4556777777653322121 123456888888774 56667778999999998876433211 123568
Q ss_pred EEEEEccCCCEEEEeCCeE-EEE-ECCCCceeeEeecCCCCeEEEEEeeCCcEEEEE
Q 006808 163 SCMAVSSDGKMLATAAGQL-KTF-NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217 (630)
Q Consensus 163 ~~l~~~p~~~~l~~~~g~i-~lw-d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~ 217 (630)
.+++|++.|..++++.|.. .+- ++.....+.........|.+|.|-.+..++++-
T Consensus 174 ~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 174 LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred eEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 8889998888887776422 211 111111111111234467888888666655543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.17 E-value=11 Score=35.53 Aligned_cols=189 Identities=7% Similarity=0.035 Sum_probs=97.2
Q ss_pred CcEEE-EEeCCCe----EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCC----------------CcEEEE
Q 006808 86 SSLLV-LGTGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----------------GMVCEI 144 (630)
Q Consensus 86 ~~~l~-~~~~~g~----v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----------------g~v~iw 144 (630)
+++++ +-+.+|. |+++|+.+++.+...... ....+++|.+++..|+....+ ..|..|
T Consensus 136 ~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h 213 (430)
T d1qfma1 136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (430)
T ss_dssp SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEE
Confidence 44455 4444554 999999999876433221 122568899999987654322 257888
Q ss_pred eCCCCce--eEEeecCC--CCeEEEEEccCCCEEEEeC-----C--eEEEEECCCCce--------eeEeecCCCCeEEE
Q 006808 145 DPLTGSL--LGKFRAST--KGISCMAVSSDGKMLATAA-----G--QLKTFNCSDHKK--------MQKFSGHPGAVRFM 205 (630)
Q Consensus 145 d~~~~~~--~~~~~~~~--~~v~~l~~~p~~~~l~~~~-----g--~i~lwd~~~~~~--------~~~~~~h~~~v~~l 205 (630)
.+.+... ...+.... ..+..+..++++++++... + .+.+.++..... ...+........-
T Consensus 214 ~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (430)
T d1qfma1 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY- 292 (430)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-
T ss_pred ECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEE-
Confidence 8876643 23334332 2466777899999876532 2 345555543211 1122222222222
Q ss_pred EEeeCCcEEEEEee--CCCeEEEEEcCCCccccceeeeeec-CCc-eeeeeEEecCCccCCCCCEEEEE-ecCC--cEEE
Q 006808 206 TFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAME-HPA-VFMDCRCIDNGGVDDAGLYVLAI-SETG--VCYI 278 (630)
Q Consensus 206 ~~sp~~~~l~~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~s~-s~dg--~i~i 278 (630)
..+.++.+++.+.. .++.|...++....... ....+. +.. .......+ .+.+|+.. ..++ .|++
T Consensus 293 ~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~--w~~vi~~~~~~~~~~~~~~-------~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK--WKVLVPEHEKDVLEWVACV-------RSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTBCCGGG--CEEEECCCSSCEEEEEEEE-------TTTEEEEEEEETTEEEEEE
T ss_pred EecCCceeecccCcccccceeEEecCCCCcccc--ceEEecccCcceeeeEEEE-------ECCEEEEEEEcCCEeEEEE
Confidence 22333344443321 13466666766543321 122222 222 23333333 23455544 4555 5888
Q ss_pred EEcCCccc
Q 006808 279 WYGQNIEE 286 (630)
Q Consensus 279 wd~~~~~~ 286 (630)
++..++..
T Consensus 364 ~~~~~~~~ 371 (430)
T d1qfma1 364 HDLATGAL 371 (430)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 98876654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.35 E-value=11 Score=34.74 Aligned_cols=97 Identities=8% Similarity=0.042 Sum_probs=63.9
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCCCCeEEEEEccCCCEEEEeCCeEEEEECCCCceeeEee--
Q 006808 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-- 196 (630)
Q Consensus 119 ~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~~~~l~~~~g~i~lwd~~~~~~~~~~~-- 196 (630)
.|..++|+.+ .++.. .++.+..++..+-...........++..+.++|..-.++...|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v 164 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNV 164 (381)
T ss_dssp TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESE
T ss_pred CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCc
Confidence 5889999754 45544 455678888766554444444556788999998754444444899999998876432211
Q ss_pred ---cCCCCeEEEEEeeCCcEEEEEe
Q 006808 197 ---GHPGAVRFMTFSDNGKYVLSSA 218 (630)
Q Consensus 197 ---~h~~~v~~l~~sp~~~~l~~~~ 218 (630)
.-.+.+.+++|++.|..++++.
T Consensus 165 ~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 165 TSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEEE
T ss_pred ceEEecCCceEEEEeCCcEEEEEeC
Confidence 1135677888888887777653
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.60 E-value=13 Score=30.82 Aligned_cols=175 Identities=14% Similarity=0.114 Sum_probs=93.9
Q ss_pred EEEEEccCCeeeEEccCCCCCCEEEEEEecCCCEEEEEeCCCcEEEEeCCCCceeEEeecCC-CCeEEEEEccCCCEEEE
Q 006808 98 VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLAT 176 (630)
Q Consensus 98 v~iwd~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~~~~l~~ 176 (630)
|++-++.......++.....-.|.++++. +.+..++|+......+|-+..|+...-..... +-|+.+ .+++++-
T Consensus 84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G 158 (313)
T d2hu7a1 84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAG 158 (313)
T ss_dssp EEEEETTSTTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEE
T ss_pred EEEEccCCCCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEE
Confidence 55555542222223322222345555553 34467777777778888888776543322111 123333 3555554
Q ss_pred eC----C--eEEEEECCCCceeeEeecCCCCeEEEEEeeCCcEEEEEee---CCCeEEEEEcCCCccccceeeeeec---
Q 006808 177 AA----G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAME--- 244 (630)
Q Consensus 177 ~~----g--~i~lwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~--- 244 (630)
.+ + ...+-|+.+|. ++.|....+.++...+.+..+. ++ +. ......-+|++.++-. -..++
T Consensus 159 ~g~~~g~~~sfF~adl~SG~-lri~tpkeGS~~~ay~~~gnKV-~s-dyEt~gEsywit~D~~s~~ye----rve~P~kd 231 (313)
T d2hu7a1 159 LGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKV-TA-GLETAREARLVTVDPRDGSVE----DLELPSKD 231 (313)
T ss_dssp EEEEETTEEEEEEEETTTEE-EEEECCSSEEEEEEEECTTSCE-EE-EEEESSCEEEEEECTTTCCEE----ECCCSSCH
T ss_pred EeeecCCcceEEEEecccCC-EEEecCCCCcccceeEccCcee-ee-ccCCCCceEEEEEecccCcee----eeecCccc
Confidence 33 2 45555776664 5566666777777777776654 32 21 1223335577765422 01111
Q ss_pred ---CCceeeeeEEecCCccCCCCCEEEEEecCCcEEEEEcCCcccccccC
Q 006808 245 ---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291 (630)
Q Consensus 245 ---~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 291 (630)
.....+..+.+. |++++++.+-.||.-.+|. +|+.+...+
T Consensus 232 ~~sy~p~~I~~~~Y~-----Pdd~L~iiakrdG~s~lF~--nGk~in~p~ 274 (313)
T d2hu7a1 232 FSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFI--DGERVEAPQ 274 (313)
T ss_dssp HHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEE--TTEEECCCS
T ss_pred ceeecceEEEeeeeC-----CCCcEEEEEecCCchheee--cceEecCCC
Confidence 122334444455 9999989999999999986 455554443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.37 E-value=23 Score=33.44 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=25.6
Q ss_pred eEeEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 006808 9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQ 40 (630)
Q Consensus 9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~ 40 (630)
.+++|.|||++|++--..|+|++++..++...
T Consensus 30 ~~la~~pdg~llVter~~G~i~~v~~~~g~~~ 61 (450)
T d1crua_ 30 HALLWGPDNQIWLTERATGKILRVNPESGSVK 61 (450)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred eEEEEeCCCeEEEEEecCCEEEEEECCCCcEe
Confidence 45699999998887755799999988777654
|