Citrus Sinensis ID: 006819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
Protein Sequence
MSSSDSPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEESK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHcccccEEEEEEEcccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccEEccccccccEEEEEcccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHEEEEEEEccccccccccccEEEEEccccEcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHcccccccccccccccccccHHHccccccccHHHHccccccccccccccccccccccccEEcccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHccccccHcccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHcHHHHHHHHHHHHHHcHHHHHHcccccccEEEEEcccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msssdspqsihfrckkpitakpkpemsnqnpnptqlasktpekqpsrrarNSRMALSLKEIRKAaqtnpqqppkdqiesagkqisaspsvkssvnpagsgspklpakYMQLAECFDSLDAVIRLLKLkcssptftsicpkiecltdrrfslghlaqlKFILPEVIQIKKVLtfdektscmkpdlhvtvnadaiecdgkskcnsknlnLRTVFRARLMDFlkdhpegdeipeetlpepfnrsrsdlqlnmvkkstsltpadsptdasveqqqvssptcqnskllnivkapsismvtgtsasasdnqqpivashfssrrhFSQKFVNSLAEKkkaerissgvsiepsttpalepclrKISSIEETCSTAAISAVElsskstskencltycasptrlsqscppvtpvkeidpmeskvsypikvdseqstpaklvstparlmigtpalhqpkrcymtpenvsasspnkltrrpphsrtlkslkfdtpvknatvehklnedisvdgdvldilpENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEESK
Flexible Loop (DISEMBL)
msssdspqsihfrckkpitakpkpemsnqnpnptqlasktpekqpsrrarNSRMALSLKEIRkaaqtnpqqppkDQIESAGKQIsaspsvkssvnpaGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKcssptftsicPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAiecdgkskcnsknlnlRTVFRARLMDFLKDHPegdeipeetlpepfnrsrSDLQLNMVKKSTsltpadsptdaSVEQQqvssptcqnskllnIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAekkkaerissgvsiepsttpalepCLRKISSIEETCSTAAISAvelsskstskeNCLTYcasptrlsqscppvtpVKEIDPMESKVSypikvdseqstpaklvstparlmigtpalhqpkrcymtpenvsasspnkltrrpphsrtlkslkfdtpvknatvehklnedisvdgdvldILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIisshlqitdrREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEESK
Low Complexity Region (SEG)
MSSSDSPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEESK
Disordered region (IsUnstruct)
**********************************************************************************************************KYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFL*******************************************************************************************************************************************************************CLTYCA*******************************************************************************************************LNEDISVDGDVLDILPENLIQS*****************QAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCP***********
Disordered Region (DISOPRED)
***********************************************************************************************************YMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTV********************RTVFRARLMDFLKDHPEGD*****************************************************************************************************************************************************************************************************************************************************************************************************************************KLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLE***
Disordered Region (DISEMBL)
**********HFRCKKPITAKP******************************RMALSLKEIRKA**************************************KLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKS***********************CQNSKLLNIVKAPSISMV***********QPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMT*****************HSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESI********
Disordered Region (DISPRO)
*************************************************************************************************GSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTP*******************************************************************************************************************************************************************************************Q****************************************************VDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSDSPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEESK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	630	2.2.26 [Sep-21-2011]
Q9SJW9	571	CDT1-like protein a, chlo	yes	no	0.350	0.387	0.493	5e-53
Q9M1S9	486	CDT1-like protein b OS=Ar	no	no	0.250	0.325	0.502	3e-37
Q9H211	546	DNA replication factor Cd	yes	no	0.187	0.216	0.285	1e-07
Q8R4E9	557	DNA replication factor Cd	yes	no	0.274	0.310	0.247	3e-05

>sp|Q9SJW9|CDT1A_ARATH CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1

 Score =  209 bits (532), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 157/241 (65%), Gaps = 20/241 (8%)

Query: 402 TPVKEIDPMESKVSYPIKVDSE---QSTPAKLVSTPARLMIGTPALHQPKRC--YMTPEN 456
           TPVK +  +    S P  +DS     +TP +  STPARLM  + A    KR   +  P++
Sbjct: 326 TPVKPVSTLAKFPSTPAIIDSTPVITATPPEFASTPARLMSTSLAARPLKRSNGHTNPDD 385

Query: 457 VSASSPNKLTRR---------PPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDIL 507
           +SA  P KL RR         P   RT+     D P+          ED+S D ++L IL
Sbjct: 386 ISADPPTKLVRRSLSLNFDSYPEDERTM-DFTDDIPIDQVP-----EEDVSSDDEILSIL 439

Query: 508 PENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEEL 567
           P+ L  +I+E+ERK +E+++PAIS AK RR+MIA LPKLFN+IH+L QSI+R VITKEEL
Sbjct: 440 PDKLRHAIKEQERKAIEDQNPAISLAKRRRKMIACLPKLFNVIHYLIQSIRRWVITKEEL 499

Query: 568 IHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLE 627
           +HKII+ H  ITDR+EVEEQ+ L+ E+VPEW+SEK SS GD+LVCINK+  P +IR+RLE
Sbjct: 500 VHKIIAGHSDITDRKEVEEQLILLQEIVPEWMSEKKSSSGDVLVCINKLASPLTIRSRLE 559

Query: 628 E 628
           E
Sbjct: 560 E 560

Member of the pre-replication complex. Component of the plastid division machinery. Promotes polyloidization and regulates endoreduplication. Involved in the coordination of cell and plastid division.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1S9|CDT1B_ARATH CDT1-like protein b OS=Arabidopsis thaliana GN=CDT1B PE=2 SV=1

 Score =  157 bits (397), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 113/169 (66%), Gaps = 11/169 (6%)

Query: 77  IESAGKQI-SASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFT 135
           I++  +QI S+SP  +S +        KLP ++  L E F+ LD  IRLLKLK SS T+ 
Sbjct: 26  IKTVKRQIFSSSPKPESVI--------KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYA 77

Query: 136 SICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIEC 195
           +ICPKIE LT+R FS  HLAQ+K I PE I++K+VL F E T CMKP LH+ +N DAI  
Sbjct: 78  NICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLKFVEDTCCMKPRLHIKLNTDAIVV 137

Query: 196 DGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSD 244
           +  + C +K + LR VF ++L+DF K HP+ DEIP+E LPEPFN  + D
Sbjct: 138 E-DTICGTKYMELRKVFHSKLVDFRKAHPK-DEIPKELLPEPFNSPQRD 184

Member of the pre-replication complex. Regulates endoreduplication. Involved in the coordination of cell and plastid division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9H211|CDT1_HUMAN DNA replication factor Cdt1 OS=Homo sapiens GN=CDT1 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
           LP KY  LAE F S+D ++ +L  +  +PTF  +   ++ +  RRF   ++ Q+K + P 
Sbjct: 186 LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPA 245

Query: 164 VIQIKK---VLTFDEKTSCMKPDLHVTVNA-DAIECDGKSK--CNSKNLNLRTVFRARLM 217
             + ++   V TF + T   + D  +T+      E DG +     S+ L  R +F  +L+
Sbjct: 246 SYRFRQERSVPTFKDGTR--RSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLV 303

Query: 218 DFLKDH 223
           + +K+H
Sbjct: 304 EHVKEH 309

Cooperates with CDC6 to promote the loading of the mini-chromosome maintenance complex onto chromatin to form the pre-replication complex necessary to initiate DNA replication. Binds DNA in a sequence-, strand-, and conformation-independent manner. Potential oncogene.

Homo sapiens (taxid: 9606)

>sp|Q8R4E9|CDT1_MOUSE DNA replication factor Cdt1 OS=Mus musculus GN=Cdt1 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 13/186 (6%)

Query: 47  RRARNSRMALSLKEIRKAAQTNPQQP--PKDQIESAGKQISASPSVKSSVNPAGSGSPKL 104
           RRAR  ++    + +R   Q N  +P  P  ++ +    +  +P+ +     A  G P L
Sbjct: 140 RRAR--KLGAQARALRARVQENAVEPSTPDAKVPTEQPCVEKAPAYQRFHALAQPGLPGL 197

Query: 105 --PAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILP 162
             P KY  L E F S+D ++ +L  +  + TF  +   ++ +  +RF   ++ Q+K + P
Sbjct: 198 VLPYKYQVLVEMFRSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYP 257

Query: 163 EVIQIKK---VLTFDEKTSCMKPDLHVTVN-ADAIECDGKSKCNSK-NLNLRTVFRARLM 217
              + ++   V TF  K S  + D  +T+      E  G ++  +   L  R VFR  L+
Sbjct: 258 TSYRFRQECNVPTF--KDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLV 315

Query: 218 DFLKDH 223
           + +K+ 
Sbjct: 316 ERVKEQ 321

Cooperates with CDC6 to promote the loading of the mini-chromosome maintenance complex onto chromatin to form the pre-replication complex necessary to initiate DNA replication. Binds DNA in a sequence-, strand-, and conformation-independent manner. Potential oncogene.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
225437846	646	PREDICTED: CDT1-like protein a, chloropl	0.852	0.831	0.517	1e-151
255583212	578	conserved hypothetical protein [Ricinus	0.892	0.972	0.520	1e-142
224085623	564	predicted protein [Populus trichocarpa]	0.822	0.918	0.489	1e-140
356536825	596	PREDICTED: CDT1-like protein a, chloropl	0.879	0.929	0.457	1e-115
449468538	599	PREDICTED: CDT1-like protein b-like [Cuc	0.857	0.901	0.424	1e-110
449496951	597	PREDICTED: CDT1-like protein b-like [Cuc	0.853	0.901	0.420	1e-106
357164360	576	PREDICTED: CDT1-like protein a, chloropl	0.780	0.854	0.352	2e-83
297744124	618	unnamed protein product [Vitis vinifera]	0.438	0.446	0.572	4e-81
115457182	588	Os04g0185100 [Oryza sativa Japonica Grou	0.709	0.760	0.350	2e-72
116317853	582	OSIGBa0148J22.4 [Oryza sativa Indica Gro	0.709	0.768	0.348	2e-72

>gi|225437846|ref|XP_002263743.1| PREDICTED: CDT1-like protein a, chloroplastic-like [Vitis vinifera]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 318/614 (51%), Positives = 392/614 (63%), Gaps = 77/614 (12%)

Query: 31  PNPTQLASKTPEK--QPSRRARNSRMALSLKEIRKAAQT--------NPQQPPKDQIESA 80
           P+    +SKTPEK   P RR RN  +ALS+KE+++ A T        + +  P     +A
Sbjct: 96  PDHDPWSSKTPEKPALPPRRGRNGSVALSIKEVKQMATTLTKSAPVQSARTAPVGSARTA 155

Query: 81  GKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPK 140
                ASPS + +VN     S KLP KY  LA+ FDSLD+ IRLL+LK S  TFT+ICPK
Sbjct: 156 SVDPVASPSRQKNVN----RSMKLPEKYEMLAQFFDSLDSSIRLLRLKGSMSTFTNICPK 211

Query: 141 IECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSK 200
           IECLTDRRFS G+LAQLK+ILPE I IKKVL  DE+TSCMKPDL +T++ D IE    SK
Sbjct: 212 IECLTDRRFSHGNLAQLKYILPEAIVIKKVLMLDERTSCMKPDLLITLDVDGIE---NSK 268

Query: 201 CNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPAD 260
             S N +LR +FRARL+DF K HPEGDEIPEETLPEPF++S+ DL  NM+K S S  PA+
Sbjct: 269 LESGNSHLRKIFRARLLDFAKAHPEGDEIPEETLPEPFSQSKQDLHSNMIKDSYSSLPAE 328

Query: 261 SPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSS--RRH 318
           +  D  +EQ Q                                     VASH S   +R 
Sbjct: 329 TSCDVLMEQPQA------------------------------------VASHLSRCFQRR 352

Query: 319 FSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKS 378
           FSQK      E + + +  +  S++ S  P  +P L K SS EE  +T A S V+ SS  
Sbjct: 353 FSQKIS---GEAENSNKKPANFSLQLSDLPVQDPYLNKSSSNEEVVATVAPSPVKSSS-- 407

Query: 379 TSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLM 438
                       P  L  S PP TP+K+ D  +++    +K    Q TPAKL  +PARLM
Sbjct: 408 ------------PAHLPLSHPPATPLKKTDSTDNQDFCSMKTPDIQVTPAKLAFSPARLM 455

Query: 439 IGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNE--D 496
             TP+L  PKRC M+P + S +SPNKL RRP  SR   SLKFDTPVK A ++ ++NE   
Sbjct: 456 TMTPSLQPPKRCLMSPHDDSTNSPNKLVRRPARSR---SLKFDTPVKGAEIKEEVNEKGS 512

Query: 497 ISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQS 556
           +SVD D+LDILPENL++SIREKERK +EE+DPAISQAK RR+MI  LPKLFNMIHFLFQS
Sbjct: 513 LSVDNDILDILPENLLESIREKERKAIEEQDPAISQAKRRREMIVGLPKLFNMIHFLFQS 572

Query: 557 IKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKM 616
           I RSV+TKEEL+HKI++SH  I DRREVEEQ+ L+ ELVPEWISEKL+S GDLL+CI K 
Sbjct: 573 INRSVVTKEELMHKILASHCDIVDRREVEEQLKLLQELVPEWISEKLASSGDLLLCIKKT 632

Query: 617 TCPESIRARLEESK 630
           + PESIR RL E+K
Sbjct: 633 SSPESIRQRLMEAK 646

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583212|ref|XP_002532371.1| conserved hypothetical protein [Ricinus communis] gi|223527927|gb|EEF30014.1| conserved hypothetical protein [Ricinus communis]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 336/646 (52%), Positives = 407/646 (63%), Gaps = 84/646 (13%)

Query: 1   MSSSDSPQSIHFRCKKPI-TAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLK 59
           MSSS S   I ++ KKP+ +A PK +    NP  TQ   K P + PSRR RN  +ALSLK
Sbjct: 1   MSSSRS-SPIPYKSKKPLKSATPKSKSKLSNPIATQTPDKQPAELPSRRLRNRGVALSLK 59

Query: 60  EIRKAAQTNP---QQPPKDQIESAGKQISASPSVKSSVNPAGSGSP--KLPAKYMQLAEC 114
           E+RK AQ N    +      ++SA +QIS  P  +S+     +  P  K+P  Y  L+E 
Sbjct: 60  EVRKIAQGNADINKGGGVHIVKSARRQISTWPE-ESTGGEKSNKQPEEKIPEGYEILSEF 118

Query: 115 FDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFD 174
           FD LD+ IRL++LK S PT T+I PKIECLTDRRF  GHLAQ+K+ILPE I+I +VL FD
Sbjct: 119 FDCLDSTIRLMRLKGSMPTLTNISPKIECLTDRRFDHGHLAQMKYILPEAIEITRVLVFD 178

Query: 175 EKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETL 234
           E++SCMKPDLHV++N DAIECD   K  SKNL+LR VFRARL DF K HPEGDEIP+E L
Sbjct: 179 ERSSCMKPDLHVSLNVDAIECDVNLKSESKNLHLRKVFRARLEDFYKAHPEGDEIPKELL 238

Query: 235 PEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMV 294
           PEPFNRS+ DL     K STSL+                           I++ P+    
Sbjct: 239 PEPFNRSKLDLSSGTTKPSTSLS---------------------------IIETPA---- 267

Query: 295 TGTSASASDNQQPIVASHFSSR--RHFSQKFVNSLAEKKKAERISSG---VSIEPSTTPA 349
            GT  + S  Q P+ ASHFS    R FSQK  N+     + E    G   V  + S    
Sbjct: 268 -GTQMAKS--QLPVAASHFSKSFTRRFSQKLTNT-----EVEITCQGYPTVCSQQSVFSV 319

Query: 350 LEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDP 409
            EP L  +SS EET S+A           T   NC    A  TR        TP K+ID 
Sbjct: 320 PEPFLDIVSSNEETSSSAP----------TDSNNC---SADVTR--------TPSKKIDS 358

Query: 410 MESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRP 469
             S    P KV S QSTPAKL  TPA+LM  TPALH PKRCYM+P++ S S  NKL RRP
Sbjct: 359 T-SDGGSPTKVASFQSTPAKLALTPAKLMSATPALHPPKRCYMSPDDDSTSLANKLVRRP 417

Query: 470 PHSRTLKSLKFDTPVKNATVEHKL-----NEDISVDGDVLDILPENLIQSIREKERKFME 524
             +R   SLKF++P+KN  VE +L     +     DGD+L ILPE+L+QSIREKERK  E
Sbjct: 418 VRTR---SLKFESPLKN--VEDELIDDSGDASGDDDGDILKILPESLLQSIREKERKAQE 472

Query: 525 ERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREV 584
           ERDPAISQAK RRQMIA LPKLFN++HF FQSI RSV+TKEEL+HKII+ H  I DRREV
Sbjct: 473 ERDPAISQAKRRRQMIACLPKLFNLMHFFFQSINRSVLTKEELMHKIIAGHSDIVDRREV 532

Query: 585 EEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEESK 630
           EEQ++L+LELVPEWIS+KL++ GD L CINKM+ PE+IRARLEE+K
Sbjct: 533 EEQLDLLLELVPEWISKKLATSGDSLFCINKMSSPETIRARLEEAK 578

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085623|ref|XP_002307639.1| predicted protein [Populus trichocarpa] gi|222857088|gb|EEE94635.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 301/615 (48%), Positives = 385/615 (62%), Gaps = 97/615 (15%)

Query: 31  PNPTQLASKTPEKQ---PSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISAS 87
           P+ + +A++TP +Q   PSR  RN R+ALSLKE+R  A    Q    +Q +SA +QI++ 
Sbjct: 32  PSNSTIATQTPTQQSQLPSR-LRNRRVALSLKEVRHIAS---QDHGTNQTKSARRQIASW 87

Query: 88  PSV-----------KSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTS 136
           P             K   N +  G  K+P KY  L E FD+LD+ IRLL++K S  TF++
Sbjct: 88  PEDSTTDTTTSKLPKPRKNQSRDGHNKIPDKYEMLGEFFDNLDSSIRLLRMKGSMSTFSN 147

Query: 137 ICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECD 196
           I PKIE LTDRRF+  HLAQLK+I+PE I+IK+VL FDE+TSCMKPDL VTVNADAI+CD
Sbjct: 148 ISPKIESLTDRRFTHKHLAQLKYIMPEAIEIKRVLKFDEQTSCMKPDLQVTVNADAIQCD 207

Query: 197 -GKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTS 255
            GK K  S+ + LR VFR+RL+DF +DHP+GD+IPEE LPEPFNRS              
Sbjct: 208 DGKLKTESEKIYLRKVFRSRLVDFYRDHPQGDDIPEEMLPEPFNRS-------------- 253

Query: 256 LTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSS 315
                                                ++ GT A   + ++P +AS  S 
Sbjct: 254 ------------------------------------PLLAGTPAI--EEEKPAMASLLS- 274

Query: 316 RRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELS 375
            R F ++F +     +K  +I +  S++ S + ALEPC  KISS E T S +A S  ++S
Sbjct: 275 -RSFKRRFSS-----QKGTKIEAENSLQRSVSSALEPCPSKISSNERT-SYSAPSPAKVS 327

Query: 376 SKSTSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPA 435
           S  T  ++CL+               TP K  D +      P K+ S+QSTPAKL  TP 
Sbjct: 328 STPTCDQDCLS--------------ATPSKVKDAINDGDDSPTKMASDQSTPAKLALTPV 373

Query: 436 RLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNE 495
            L+  TPALHQ KRC     + S++SP+KL RRPP     +SL F+TPVK+A  E +   
Sbjct: 374 ALISTTPALHQHKRCTSPYNDGSSNSPDKLVRRPPS----RSLIFETPVKHAMDEQRETG 429

Query: 496 DISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQ 555
           D+S D DVL I PE+L+QSIREKE+K  EERDPAISQAK RRQMIA LPKLFN IHFLFQ
Sbjct: 430 DVSDDDDVLKIFPESLLQSIREKEQKAKEERDPAISQAKKRRQMIACLPKLFNKIHFLFQ 489

Query: 556 SIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINK 615
           SI++SV+TKEELIHKII+SH  I DRREV+EQ+NL+LELVPEWISEKL+S GD +  INK
Sbjct: 490 SIRQSVLTKEELIHKIIASHSDIADRREVDEQLNLLLELVPEWISEKLASSGDSIFRINK 549

Query: 616 MTCPESIRARLEESK 630
           M  PE++RARLEE+K
Sbjct: 550 MYSPETVRARLEEAK 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536825|ref|XP_003536934.1| PREDICTED: CDT1-like protein a, chloroplastic-like [Glycine max]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 282/617 (45%), Positives = 363/617 (58%), Gaps = 63/617 (10%)

Query: 28  NQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQ----------PPKDQI 77
           +Q P+P Q +SKTPEK P +R RN  +ALS+ +IRKAA    Q           P    +
Sbjct: 27  SQPPSPVQFSSKTPEK-PPQRIRNRGVALSVADIRKAACKRLQDQKQCTEMTSAPSSSSL 85

Query: 78  -ESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTS 136
            +S  +QIS  PS  S        S KLP KY  L E FD LD ++ L +LK  +PTFTS
Sbjct: 86  NKSVRRQISLWPSSPSKPKTTDDESNKLPEKYEILDEFFDRLDTLVSLHRLKRWTPTFTS 145

Query: 137 ICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIEC- 195
           I  +IE LTDRRF+  HLAQLKFILP  I +KK L  DE+TSCMKPD+H++++ DA+E  
Sbjct: 146 ISSRIESLTDRRFTHSHLAQLKFILPNAIVLKKHLVLDERTSCMKPDIHISLDPDAVEAD 205

Query: 196 DGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKS-- 253
           D K       ++L+ VFRARL DF + HPEGDEIPE TLPEPFNR + D  L+M++    
Sbjct: 206 DAKLPPQRGRVSLKKVFRARLRDFCESHPEGDEIPEGTLPEPFNRPKKDSVLDMLETRLP 265

Query: 254 TSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHF 313
           T L P    +D              N++  N+ +   +S++  TS    +        H 
Sbjct: 266 TKLPPCMRYSD-----------IVNNAESANLDE--KLSVLVNTSVELPNE-------HL 305

Query: 314 SSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVE 373
           ++  H S  F     +K     +     ++P   P  E    + +   +T S    S  +
Sbjct: 306 AAPSHMSPSFRADDVQKNPLLDL-----LQPLAFPVSESSRNENTPFVDTESHLKTSPAK 360

Query: 374 LSSKSTSKENCLTYCASPTRLSQSCP-PVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVS 432
           L+S+++S E+CLT CA    L  SC  P TP K  +  E+K      +D+  STPAKLVS
Sbjct: 361 LASEASSSESCLTICAP---LESSCAHPATPSKTTEYTENKDGSLKSIDA-MSTPAKLVS 416

Query: 433 TPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHK 492
           TP RLM  TPAL  PKR YM+P++ S SS NKL RRPP SR   SLKFDTPVKN      
Sbjct: 417 TPIRLMSATPALRSPKRHYMSPDDHSISSLNKLARRPPRSR---SLKFDTPVKNK----- 468

Query: 493 LNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHF 552
                    D+ D L E+ IQSIREKER  ME+RDPAI++AK R++ IASLPKLF+MI  
Sbjct: 469 --------DDIFDTLQESTIQSIREKERLAMEKRDPAITEAKKRKKNIASLPKLFDMIRG 520

Query: 553 LFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVC 612
           L +  +R+ ITK EL+ KIISS   I DR EVEEQ+NL+ EL PEWISEK  S GDLL+ 
Sbjct: 521 LLR--QRNCITKAELVSKIISSRCDIADRSEVEEQLNLLQELAPEWISEKQVSSGDLLLF 578

Query: 613 INKMTCPESIRARLEES 629
           INKM  PE++RA LEE+
Sbjct: 579 INKMLSPETVRASLEEA 595

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468538|ref|XP_004151978.1| PREDICTED: CDT1-like protein b-like [Cucumis sativus]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 266/626 (42%), Positives = 371/626 (59%), Gaps = 86/626 (13%)

Query: 32  NPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQ--------------TNPQQPPKDQI 77
           +P  L+S+TPEK P  R R  ++ALS+KE+++AAQ              T   +  + Q+
Sbjct: 33  DPQSLSSRTPEK-PVERNRKRKVALSIKEVKQAAQSVHESNRQLHHDLTTRGSKLVRRQM 91

Query: 78  ESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSI 137
           +S   +  +S S K+ V+   + S KLP K+  L + FD LD+ +RLL+ K  +  F+S+
Sbjct: 92  DSWSNESQSSRS-KTCVD---NKSNKLPEKFELLCKFFDCLDSAMRLLRFKGVASNFSSV 147

Query: 138 CPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDG 197
           C KIE LTDRRFS  HLAQLKFILPE I +KKV+ FDE+TSCMKPDLH++ N   +E   
Sbjct: 148 CTKIEVLTDRRFSYSHLAQLKFILPEAIMLKKVVVFDERTSCMKPDLHISFNFGVLESK- 206

Query: 198 KSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFN-RSRSDLQLNMVKKSTSL 256
                 + + LR +FR RL +F+  HPE D+IP+++LP PFN RS     LN+  ++ SL
Sbjct: 207 ----EDQYMQLRKLFRTRLSEFVSSHPEIDDIPKDSLPNPFNFRS-----LNLFPETNSL 257

Query: 257 TPADSPTDASVEQQQV-------SSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIV 309
           +   +  +    +Q +       S+   +N++   I+K+      T T    +  ++   
Sbjct: 258 SSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS------TMTGHGPNKQKELFG 311

Query: 310 ASHFS-SRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAA 368
            SHFS   R FSQK VN                I+  T  A               ST  
Sbjct: 312 LSHFSPVSRLFSQKAVN----------------IDVQTFDA--------------SSTKP 341

Query: 369 ISAVELSSKSTSKENCLTYCASPTRLSQSCP-PVTP--VKEIDPMESKVSYPIKVDSEQS 425
            S ++LSS STS  +CL   ASP   S S P P TP  +  I  M  +     KV+   S
Sbjct: 342 SSPIKLSSNSTSNLHCLENYASPI-CSLSLPNPTTPSNMVGIVTMRKEDGQSAKVNDIDS 400

Query: 426 TPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVK 485
           TP K VST  +LM  TPA+  PKR  MTP++  + S NKL RRPP SR   SL FDTP K
Sbjct: 401 TPVKFVSTSDQLMASTPAMAPPKRSSMTPDDDFSYSTNKLVRRPPRSR---SLVFDTPTK 457

Query: 486 NATVEHKLNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPK 545
               + ++  D+S+D D+LD+L E+L+QSIREKERK  EE+ PAI+QAK R+++IA+LPK
Sbjct: 458 EDKNKDEI--DVSLDNDILDVLSESLVQSIREKERKIKEEQMPAITQAKRRQKLIANLPK 515

Query: 546 LFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSS 605
           LFN I FL+   KR+V+ +EEL++KII+  + I DRREVEEQ++L+ ELVP+WIS+KL+S
Sbjct: 516 LFNAIFFLYH--KRTVVKREELLNKIITGSVDILDRREVEEQLDLLFELVPDWISQKLAS 573

Query: 606 -CGDLLVCINKMTCPESIRARLEESK 630
             GD+LVCINK++  ES+  RL+E+K
Sbjct: 574 NGGDVLVCINKLSNVESVSVRLKEAK 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496951|ref|XP_004160272.1| PREDICTED: CDT1-like protein b-like [Cucumis sativus]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 263/626 (42%), Positives = 366/626 (58%), Gaps = 88/626 (14%)

Query: 32  NPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQ--------------TNPQQPPKDQI 77
           +P  L+S+TPEK P  R R  ++ALS+KE+++AAQ              T   +  + Q+
Sbjct: 33  DPQSLSSRTPEK-PVERNRKRKVALSIKEVKQAAQSVHESNRQLHHDLTTRGSKLVRRQM 91

Query: 78  ESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSI 137
           +S   +  +S S K+ V+   +   KLP K+  L + FD LD+ +RLL+ K  +  F+S+
Sbjct: 92  DSWSNESQSSRS-KTCVDNKFN---KLPEKFELLCKFFDCLDSAMRLLRFKGVASNFSSV 147

Query: 138 CPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDG 197
           C KIE LTDRRFS  HLAQLKFILPE I +KKV+ FDE+TSCMKPDLH++ N   +E   
Sbjct: 148 CTKIEVLTDRRFSYSHLAQLKFILPEAIMLKKVVVFDERTSCMKPDLHISFNFGVLESK- 206

Query: 198 KSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFN-RSRSDLQLNMVKKSTSL 256
                 + + LR +FR RL +F+  HPE D+IP+++LP PFN RS     LN+  ++ SL
Sbjct: 207 ----EDQYMQLRKLFRTRLSEFVSSHPEIDDIPKDSLPNPFNFRS-----LNLFPETNSL 257

Query: 257 TPADSPTDASVEQQQV-------SSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIV 309
           +   +  +    +Q +       S+   +N++   I+K+      T T    +  ++   
Sbjct: 258 SSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS------TMTGHGPNKQKELFG 311

Query: 310 ASHFS-SRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAA 368
            SHFS   R FSQK VN                I+  T  A               ST  
Sbjct: 312 LSHFSPVSRLFSQKAVN----------------IDVQTFDA--------------SSTKP 341

Query: 369 ISAVELSSKSTSKENCLTYCASPTRLSQSCP-PVTP--VKEIDPMESKVSYPIKVDSEQS 425
            S ++LSS STS  +CL   ASP   S S P P TP  +  I  M  +     KV+   S
Sbjct: 342 SSPIKLSSNSTSNLHCLENYASPI-CSSSLPNPTTPSNIVGIVTMRKEDGQSAKVNDIDS 400

Query: 426 TPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVK 485
           TP K VST  +LM  TPA+  PKR  MTP++  + S NKL RRPP SR   SL FDTP K
Sbjct: 401 TPVKFVSTSDQLMASTPAMAPPKRSSMTPDDDFSYSTNKLVRRPPRSR---SLVFDTPTK 457

Query: 486 NATVEHKLNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPK 545
               + ++  D+S+D D+LD+L E     IREKERK  EE+ PAI+QAK R+++IA+LPK
Sbjct: 458 EDKNKDEI--DVSLDNDILDVLSER--PCIREKERKIKEEQMPAITQAKRRQKLIANLPK 513

Query: 546 LFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSS 605
           LFN I FL+   KR+V+T+EEL++KII+  + I DRREVEEQ++L+ ELVP+WIS+KL+S
Sbjct: 514 LFNAIFFLYH--KRTVVTREELLNKIITGSVDILDRREVEEQLDLLFELVPDWISQKLAS 571

Query: 606 -CGDLLVCINKMTCPESIRARLEESK 630
             GD+LVCINK++  ES+  RL+E+K
Sbjct: 572 NGGDVLVCINKLSNVESVSVRLKEAK 597

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357164360|ref|XP_003580028.1| PREDICTED: CDT1-like protein a, chloroplastic-like [Brachypodium distachyon]

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 215/610 (35%), Positives = 314/610 (51%), Gaps = 118/610 (19%)

Query: 40  TPEK-QPSRRARNSRMALSLKEIRKAA------QTNPQQPPK-DQIESAGKQISASPSVK 91
           TPEK + +RRARN  +ALS+KE+R+AA      +  P +  + D +ES  +++       
Sbjct: 58  TPEKVESTRRARNGTVALSVKEVRRAALGLRRAEKGPAEAAQEDPLESVERELGVG---- 113

Query: 92  SSVNPAGSG-SP-------KLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIEC 143
                AG+G SP       KLP  Y  L E F+  ++  RLL++K S  TF +IC  I+ 
Sbjct: 114 -----AGAGRSPVKRKPEVKLPESYEMLCEFFNCFESSTRLLRMKGSKATFPNICASIQN 168

Query: 144 LTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNS 203
           L++RRF+ G+LAQLK+I+PE I I K+L  DEKT CMKPDL V +  DAIE     K  +
Sbjct: 169 LSERRFTYGNLAQLKYIMPEAIVINKILLRDEKTCCMKPDLQVNLLVDAIEGCATQKGET 228

Query: 204 KNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPT 263
           +   LR +FR RL+DF + HPEGD+IPE  LP PF R++S      V + +   P  +P 
Sbjct: 229 QYSALRRIFRQRLVDFFRSHPEGDDIPEHELPHPFTRTKSS-----VAQFSPRVPQVAPA 283

Query: 264 DASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSS--RRHFSQ 321
                                 V +P ++            QQP++ SH S   +R FSQ
Sbjct: 284 ----------------------VPSPCLA-----------EQQPVMMSHMSHSFKRRFSQ 310

Query: 322 KFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSK 381
           +                      ST PA       ++ +E T + + +S   L S   S 
Sbjct: 311 R---------------------SSTCPATASGTSPVAKVEPTTTQSPLSRKSLLS---SD 346

Query: 382 ENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGT 441
              + + A              V+E    +      +K    + TPAK  STP RLM  T
Sbjct: 347 SGGIDHEAQ-------------VQE----KGGNDVALKFGVSEGTPAKFASTPVRLMAAT 389

Query: 442 PALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISV-- 499
           P LH PKR       V  + P  + +R   ++      F TP KNA+   + N+  S   
Sbjct: 390 PGLHTPKRPISA--TVCDTPPLTMAKRSARAKL-----FMTPTKNASSMEEKNQSTSTSA 442

Query: 500 ---DGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQS 556
              D ++L  LP++L+QS++EKE++ +EE++   +    R+++IASLP  F++I  ++QS
Sbjct: 443 IDDDDELLSFLPKSLLQSVKEKEKRALEEKETGFAGQVQRQKLIASLPSTFDIIFLIYQS 502

Query: 557 IKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKM 616
            +RSV+TK+ELIHKI +S+ +I DR EVEEQ+ L+ E VPEWISEK +  GD+L C++  
Sbjct: 503 KQRSVMTKQELIHKITASNPKIVDRGEVEEQLRLLQEFVPEWISEKTARTGDVLCCVDTA 562

Query: 617 TCPESIRARL 626
                IR RL
Sbjct: 563 LSQAEIRQRL 572

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744124|emb|CBI37094.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 169/295 (57%), Positives = 207/295 (70%), Gaps = 19/295 (6%)

Query: 338 SGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQS 397
           +  S++ S  P  +P L K SS EE  +T A S V+ SS              P  L  S
Sbjct: 341 ANFSLQLSDLPVQDPYLNKSSSNEEVVATVAPSPVKSSS--------------PAHLPLS 386

Query: 398 CPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENV 457
            PP TP+K+ D  +++    +K    Q TPAKL  +PARLM  TP+L  PKRC M+P + 
Sbjct: 387 HPPATPLKKTDSTDNQDFCSMKTPDIQVTPAKLAFSPARLMTMTPSLQPPKRCLMSPHDD 446

Query: 458 SASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNE--DISVDGDVLDILPENLIQSI 515
           S +SPNKL RRP  SR   SLKFDTPVK A ++ ++NE   +SVD D+LDILPENL++SI
Sbjct: 447 STNSPNKLVRRPARSR---SLKFDTPVKGAEIKEEVNEKGSLSVDNDILDILPENLLESI 503

Query: 516 REKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSH 575
           REKERK +EE+DPAISQAK RR+MI  LPKLFNMIHFLFQSI RSV+TKEEL+HKI++SH
Sbjct: 504 REKERKAIEEQDPAISQAKRRREMIVGLPKLFNMIHFLFQSINRSVVTKEELMHKILASH 563

Query: 576 LQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEESK 630
             I DRREVEEQ+ L+ ELVPEWISEKL+S GDLL+CI K + PESIR RL E+K
Sbjct: 564 CDIVDRREVEEQLKLLQELVPEWISEKLASSGDLLLCIKKTSSPESIRQRLMEAK 618

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115457182|ref|NP_001052191.1| Os04g0185100 [Oryza sativa Japonica Group] gi|38344618|emb|CAE02517.2| OSJNBb0003A12.4 [Oryza sativa Japonica Group] gi|38347086|emb|CAD39469.2| OSJNBa0001M07.6 [Oryza sativa Japonica Group] gi|113563762|dbj|BAF14105.1| Os04g0185100 [Oryza sativa Japonica Group] gi|215767412|dbj|BAG99640.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 276/551 (50%), Gaps = 104/551 (18%)

Query: 93  SVNPAGSGSP-----KLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDR 147
            V PA   SP     KLP  Y  L E F+  ++  RLL++K S  +F +IC  I+ L++R
Sbjct: 121 GVGPAPVRSPVKRTAKLPESYEMLCEFFNCFESSTRLLRMKGSKASFPNICASIQHLSER 180

Query: 148 RFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLN 207
           RF+  HLAQLK+I+PEVI I K+L  DE T CMKPDL V +  DA+E   K K  +    
Sbjct: 181 RFTYSHLAQLKYIMPEVIVINKILLRDETTCCMKPDLQVNLLVDAVEGVAKQKGETGYSA 240

Query: 208 LRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASV 267
           LR +FR RL+D+ +DHPEG +IPE  LP PF  +RS                        
Sbjct: 241 LRRIFRQRLVDYFRDHPEGHDIPEHELPHPFGPTRS------------------------ 276

Query: 268 EQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHF--SSRRHFSQKFVN 325
                S+P      +   V A  +S  T        ++QP+  SH   S +R FSQ+   
Sbjct: 277 -----SAPQAIQEDIPKTVSALPLSSAT--------DRQPVAMSHMPNSFKRMFSQRSAA 323

Query: 326 SLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCL 385
           + A         S V  EPS T    P  RK         +    +V L  +S  +E  +
Sbjct: 324 AAAATTSTTSPLSKV--EPSIT---SPLSRK-----SLLGSPVSGSVSLVRESEGQEKSV 373

Query: 386 TYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALH 445
              A                     +S VS        + TPAK  STP RLM  TP L 
Sbjct: 374 EGVA--------------------FQSGVS--------EGTPAKFASTPVRLMAETPVLQ 405

Query: 446 QPKR-----CYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDIS-- 498
            PKR      Y TP       P K+ +R   ++      F TP K+A+   +  +  S  
Sbjct: 406 TPKRPVSGTGYDTP-------PLKMAKRSARTKL-----FMTPTKDASSMDEKKQSTSAS 453

Query: 499 -VDGD--VLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQ 555
            +DGD  +L  LP++L+QS+++KE + + E+    +    R ++IASLP +F++I  ++Q
Sbjct: 454 TLDGDDELLSFLPKSLLQSVKDKENRALVEKQTGFADHIKREKLIASLPSIFDIIFLIYQ 513

Query: 556 SIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINK 615
           S +R+V+TK+ELIHKII+S+ +I DR EVE+Q+ L+ E++P+WISEK +  GD+L C++ 
Sbjct: 514 SRQRTVMTKQELIHKIIASNPKIVDRGEVEDQLKLLEEIIPDWISEKTARTGDVLCCVDT 573

Query: 616 MTCPESIRARL 626
                 IR RL
Sbjct: 574 AMSQAEIRQRL 584

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116317853|emb|CAH65885.1| OSIGBa0148J22.4 [Oryza sativa Indica Group] gi|116317863|emb|CAH65893.1| OSIGBa0132G14.1 [Oryza sativa Indica Group]

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 276/551 (50%), Gaps = 104/551 (18%)

Query: 93  SVNPAGSGSP-----KLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDR 147
            V PA   SP     KLP  Y  L E F+  ++  RLL++K S  +F +IC  I+ L++R
Sbjct: 115 GVGPAPVRSPVKRRAKLPESYEMLCEFFNCFESSTRLLRMKGSKASFPNICASIQHLSER 174

Query: 148 RFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLN 207
           RF+  HLAQLK+I+PEVI I K+L  DE T CMKPDL V +  DA+E   K K  +    
Sbjct: 175 RFTYSHLAQLKYIMPEVIVINKILLRDETTCCMKPDLQVNLLVDAVEGVAKQKGETGYSA 234

Query: 208 LRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASV 267
           LR +FR RL+D+ +DHPEG +IPE  LP PF  +RS                        
Sbjct: 235 LRRIFRQRLVDYFRDHPEGHDIPEHELPHPFGPTRS------------------------ 270

Query: 268 EQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHF--SSRRHFSQKFVN 325
                S+P      +   V A  +S  T        ++QP+  SH   S +R FSQ+   
Sbjct: 271 -----SAPQAIQEDIPKTVSALPLSSAT--------DRQPVAMSHMPNSLKRMFSQRSAA 317

Query: 326 SLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCL 385
           + A         S   +EPS T    P  RK         +    +V L  +S  +E  +
Sbjct: 318 AAAATTSTTSPLS--KVEPSIT---SPLSRK-----SLLGSPVSGSVSLVRESEGQEKSV 367

Query: 386 TYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALH 445
              A                     +S VS        + TPAK  STP RLM  TP L 
Sbjct: 368 EGVA--------------------FQSGVS--------EGTPAKFASTPVRLMAETPVLQ 399

Query: 446 QPKR-----CYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDIS-- 498
            PKR      Y TP       P K+ +R   ++      F TP K+A+   +  +  S  
Sbjct: 400 TPKRPVSGTGYDTP-------PLKMAKRSARTKL-----FMTPTKDASSMDEKKQSTSAS 447

Query: 499 -VDGD--VLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQ 555
            +DGD  +L  LP++L+QS+++KE + + E+    +    R ++IASLP +F++I  ++Q
Sbjct: 448 TLDGDDELLSFLPKSLLQSVKDKENRALVEKQTGFADHIKREKLIASLPSIFDIIFLIYQ 507

Query: 556 SIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINK 615
           S +R+V+TK+ELIHKII+S+ +I DR EVE+Q+ L+ E++P+WISEK +  GD+L C++ 
Sbjct: 508 SRQRTVMTKQELIHKIIASNPKIVDRGEVEDQLKLLEEIIPDWISEKTARTGDVLCCVDT 567

Query: 616 MTCPESIRARL 626
                 IR RL
Sbjct: 568 AMSQAEIRQRL 578

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	630
TAIR|locus:2102460	486	CDT1B "homolog of yeast CDT1 B	0.255	0.331	0.5	2.4e-66
TAIR|locus:2042541	571	CDT1A "homolog of yeast CDT1 A	0.607	0.670	0.394	4.2e-56
RGD|1309211	556	Cdt1 "chromatin licensing and	0.412	0.467	0.238	9.2e-15
UNIPROTKB|Q9H211	546	CDT1 "DNA replication factor C	0.477	0.551	0.221	4e-13
UNIPROTKB|F1S6K4	551	CDT1 "Uncharacterized protein"	0.347	0.397	0.246	2.5e-12
UNIPROTKB|F1MCJ1	572	CDT1 "Uncharacterized protein"	0.469	0.517	0.227	5.5e-12
MGI|MGI:1914427	557	Cdt1 "chromatin licensing and	0.463	0.524	0.218	8.6e-12
ZFIN|ZDB-GENE-070111-1	678	cdt1 "chromatin licensing and	0.303	0.281	0.251	5.2e-11
FB|FBgn0000996	743	dup "double parked" [Drosophil	0.206	0.174	0.257	4.1e-10
UNIPROTKB|I3L5Z3	1383	PRG4 "Uncharacterized protein"	0.412	0.187	0.223	2.5e-05

TAIR|locus:2102460 CDT1B "homolog of yeast CDT1 B homolog of yeast CDT1 B" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 2.4e-66, Sum P(3) = 2.4e-66
 Identities = 86/172 (50%), Positives = 114/172 (66%)

Query:    74 KDQIESAGKQI-SASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSP 132
             K  I++  +QI S+SP  +S +        KLP ++  L E F+ LD  IRLLKLK SS 
Sbjct:    23 KTPIKTVKRQIFSSSPKPESVI--------KLPERFEILEEFFNGLDTAIRLLKLKGSST 74

Query:   133 TFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADA 192
             T+ +ICPKIE LT+R FS  HLAQ+K I PE I++K+VL F E T CMKP LH+ +N DA
Sbjct:    75 TYANICPKIEYLTNRIFSYDHLAQMKHIYPEAIELKRVLKFVEDTCCMKPRLHIKLNTDA 134

Query:   193 IECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSD 244
             I  +  + C +K + LR VF ++L+DF K HP+ DEIP+E LPEPFN  + D
Sbjct:   135 IVVED-TICGTKYMELRKVFHSKLVDFRKAHPK-DEIPKELLPEPFNSPQRD 184

GO:0005634 "nucleus" evidence=ISM

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0006260 "DNA replication" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048229 "gametophyte development" evidence=IMP

GO:0051276 "chromosome organization" evidence=IMP

GO:0070182 "DNA polymerase binding" evidence=IPI

TAIR|locus:2042541 CDT1A "homolog of yeast CDT1 A" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 165/418 (39%), Positives = 232/418 (55%)

Query:     1 MSSSDSPQSIHFRCKKPITA-KPKPEMSNQNPNPTQLASKTPEKQPSR---RARNSRMAL 56
             MS+  S +SI F+ KK +    P  +    NPNP+ +A  TPEK       R+RN  +AL
Sbjct:     1 MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVAL 60

Query:    57 SLKEIRKAAQTNPQQPPKDQIESAGKQ------ISASPSVKSSVNPAGSGSPKLPAKYMQ 110
             S+KEIR+AA +  +   +D + S+ K        S+SPS + S N   +   KLP KY  
Sbjct:    61 SVKEIRQAAGSRRRS--EDPVASSAKSRLFFDSSSSSPSKRKSSNK-NAEKEKLPEKYEN 117

Query:   111 LAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKV 170
             L + F++LD  + L KL+ S PTF++I  +IE LT+RRF   HLAQ+K ILPE I+IK+V
Sbjct:   118 LGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILPEAIEIKRV 177

Query:   171 LTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIP 230
             L  DE T CMKPDLHVT+NADA+E + KSK  SK + LR VFRARL DF+K HP+GDE+P
Sbjct:   178 LIHDETTCCMKPDLHVTLNADAVEYNDKSKSESKKIALRKVFRARLADFVKAHPQGDEVP 237

Query:   231 EETLPEPFNRSRSDLQLNM-VKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAP 289
             EE LPEPFNR +     N+ VK+ +SL    +   AS   +  SSP          VK  
Sbjct:   238 EEPLPEPFNRRKPVENSNVEVKRVSSLMEEMASIPAS---KLFSSPITSTP-----VKTT 289

Query:   290 SISMVTGTSASASDNQQPIVASHFSSRRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPA 349
             S S+   TS+  +    P   +   +++  S+  +N L    K   +S+     PST PA
Sbjct:   290 S-SLAKPTSSQINIAPTPTKPTSTPAKQTLSE--INILPTPVKP--VSTLAKF-PST-PA 342

Query:   350 LEPCLRKISSIE-ETCSTAA-ISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVK 405
             +      I++   E  ST A + +  L+++   + N  T   +P  +S   PP   V+
Sbjct:   343 IIDSTPVITATPPEFASTPARLMSTSLAARPLKRSNGHT---NPDDISAD-PPTKLVR 396

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0006260 "DNA replication" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

GO:0048229 "gametophyte development" evidence=IMP

GO:0051276 "chromosome organization" evidence=IMP

GO:0070182 "DNA polymerase binding" evidence=IPI

RGD|1309211 Cdt1 "chromatin licensing and DNA replication factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
 Identities = 67/281 (23%), Positives = 123/281 (43%)

Query:     2 SSSDSPQSIHFRCKKPITAKPKPEMSNQNPNPTQLASKTPEKQPSRRARNSR-MALSLKE 60
             SSS  P  +   C  P+  + K    ++ P  +++ S+    +     R +R +    + 
Sbjct:    95 SSSVCPSPV---CPSPVK-RTKSTTVSRGPQQSKVPSQDSISELQSCLRQARKLGAQARA 150

Query:    61 IRKAAQTNPQQPPKDQIESAGKQ--ISASPSVKSSVNPAGSGSPKL--PAKYMQLAECFD 116
             +R   Q N  +P     +   +Q  +  +P+ +     A  G P L  P KY  LAE F 
Sbjct:   151 LRARVQENVVEPSTPDTKEPTEQPCVDKAPAYQRFHALAQPGLPGLVLPYKYQVLAEMFR 210

Query:   117 SLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK---VLTF 173
             S+D ++ +L  +  + TF  +   ++ +  +RF   ++ Q+K + PE    ++   V TF
Sbjct:   211 SMDTIVSMLHNRSETVTFAKVKQGVQEMIRKRFEERNMGQIKTVYPESYSFRQECNVPTF 270

Query:   174 DEKTSCMKPDLHVTVNAD-AIECDGKSKCNSKNL-NLRTVFRARLMDFLKDHPE---GDE 228
               K S  + D  +T+      E  G ++  +  L   R VFR  L++ +K+H +      
Sbjct:   271 --KDSIKRSDYQLTIEPLLGQEAGGATQLTATGLLQRRQVFRQNLVERVKEHHKVFLASL 328

Query:   229 IPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQ 269
              P  T+PE    +R   + N V +   + PA+ P     E+
Sbjct:   329 NPPMTVPED-QLTRWHPRFN-VDEVPDIEPAELPQPPVTEK 367

GO:0000076 "DNA replication checkpoint" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IEA;ISO

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA;ISO

UNIPROTKB|Q9H211 CDT1 "DNA replication factor Cdt1" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
 Identities = 72/325 (22%), Positives = 138/325 (42%)

Query:     1 MSSSDSPQSIHF-RCKKP-ITAKPKPEMSNQNPNPTQLASK-TPEKQPSRRARNSRMALS 57
             +SS  +P++     C  P    K     + Q P+ T    + T  +  S   R   +   
Sbjct:    77 VSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGAR 136

Query:    58 LKEIRKAAQT-----NPQQPPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLA 112
             ++ ++ +AQ       P+   + + E  G++  A     +   P   G   LP KY  LA
Sbjct:   137 VRALKASAQDAGESCTPEAEGRPE-EPCGEKAPAYQRFHALAQPGLPGLV-LPYKYQVLA 194

Query:   113 ECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK--- 169
             E F S+D ++ +L  +  +PTF  +   ++ +  RRF   ++ Q+K + P   + ++   
Sbjct:   195 EMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPASYRFRQERS 254

Query:   170 VLTFDEKTSCMKPDLHVTVNADAI-ECDGKSK--CNSKNLNLRTVFRARLMDFLKDHPEG 226
             V TF + T   + D  +T+      E DG +     S+ L  R +F  +L++ +K+H + 
Sbjct:   255 VPTFKDGTR--RSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKA 312

Query:   227 ---DEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSK-L 282
                   P   +PE    +R   + N V +   + PA  P   + E+   +      ++ L
Sbjct:   313 FLASLSPAMVVPED-QLTRWHPRFN-VDEVPDIEPAALPQPPATEKLTTAQEVLARARNL 370

Query:   283 LNIVKAPSISMVTGTSASASDNQQP 307
             ++     ++S +   SA+ S    P
Sbjct:   371 ISPRMEKALSQLALRSAAPSSPGSP 395

GO:0006260 "DNA replication" evidence=IEA

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0000076 "DNA replication checkpoint" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000083 "regulation of transcription involved in G1/S phase of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F1S6K4 CDT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 2.5e-12, Sum P(3) = 2.5e-12
 Identities = 59/239 (24%), Positives = 105/239 (43%)

Query:    46 SRRARNSRMALSLKEIRKAAQT----NPQQPPKD--QIESAGKQISASPSVKSSVNPAGS 99
             SR  R   +   ++E+R++AQ     +P+ P ++    E  G+++ A     +   P   
Sbjct:   132 SRLQRAQELGAQVQELRESAQRKDAEDPRVPEEEGRPAEPGGEKMPAYQRFHALAQPGPP 191

Query:   100 GSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKF 159
             G   LP KY  LAE F SLD ++ LL  +  + TF  +   ++ +  +RF   +L Q+K 
Sbjct:   192 GLV-LPYKYQVLAEMFRSLDTIVGLLHNRSETVTFAKVKQGVQDMMRKRFEEHNLGQIKT 250

Query:   160 ILPEVIQIKK---VLTFDEKTSCMKPDLHVTVNADAIECDGKSKCN---SKNLNLRTVFR 213
             + P   + ++   + TF  K    + D  +T+     +  G +      S  L  R VF 
Sbjct:   251 VYPASYRFRQERFIPTF--KDGVRRSDYQLTLEPLLDQPAGSAAPQLTASCLLQRRQVFS 308

Query:   214 ARLMDFLKDHPEG---DEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQ 269
               L+  +++H         P   +PE     R   + N V +   + PA+ P   +VE+
Sbjct:   309 QNLVARVREHHRAFLASLNPPMEVPED-QLMRWHPRFN-VDEVPDIEPAELPQPPTVEK 365

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000076 "DNA replication checkpoint" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0004435 "phosphatidylinositol phospholipase C activity" evidence=IEA

UNIPROTKB|F1MCJ1 CDT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 142 (55.0 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
 Identities = 73/321 (22%), Positives = 140/321 (43%)

Query:     6 SPQSIHFRCKKPITAKPKPEMSNQ-NPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKA 64
             SPQS   + K   +A  +P ++ Q N  P+++   T  +  S   R   +    +E++ +
Sbjct:   113 SPQSKETK-KAARSAGGRPCLAAQENKVPSKV---TLSELKSCLQRAQELGARFQELKAS 168

Query:    65 AQTNPQQP--PKDQ---IESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLD 119
             AQ +  +P  P+D+    E  G+Q+ A     +   P   G   LP KY  L+E F S+D
Sbjct:   169 AQKDAGEPSAPEDEGRLEEPCGEQMPAYQRFHALAQPGLPGLV-LPYKYQVLSEMFRSMD 227

Query:   120 AVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK---VLTFDEK 176
              ++ +L  +  + TF  +   ++ +  +RF   ++ Q+K + P     ++   V TF  K
Sbjct:   228 TIVGMLYNRSETVTFAKVKQGVQDMMRKRFEERNVGQIKTVYPGSYHFRQERFVPTF--K 285

Query:   177 TSCMKPDLHVTVNADAIECDGKSKCN---SKNLNLRTVFRARLMDFLKDHPEG---DEIP 230
                 + D  +T+     +  G +      S+ L  R VF   L+  +++H         P
Sbjct:   286 DGIKRSDYQLTIEPLLDQQAGSAAPQLTASRLLQRRQVFSQNLVARVREHHRAFLASLNP 345

Query:   231 EETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSK-LLNIVKAP 289
                +PE    +R   + N V     + PA+ P   +VE+   +      ++ L++     
Sbjct:   346 PMEVPED-QLTRWHPRFN-VDGVPDIEPAELPQPPAVEKLTTAQEVLARARSLMSPRMEK 403

Query:   290 SISMVTGTSASASDNQQPIVA 310
             ++S +   +A  S  + P +A
Sbjct:   404 ALSDLAQRTAEPSSPRSPSLA 424

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000076 "DNA replication checkpoint" evidence=IEA

MGI|MGI:1914427 Cdt1 "chromatin licensing and DNA replication factor 1" [Mus musculus (taxid:10090)]

 Score = 138 (53.6 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
 Identities = 69/316 (21%), Positives = 130/316 (41%)

Query:    14 CKKPIT-AKPKPEMSNQNPNPTQLASKTPEKQPS-RRARNSRMALSLKEIRKAAQTNPQQ 71
             C  P+   K       Q P          E Q   RRAR  ++    + +R   Q N  +
Sbjct:   105 CPSPVKRTKSTTVYVGQQPGKIPSEDSVSELQSCLRRAR--KLGAQARALRARVQENAVE 162

Query:    72 P--PKDQIESAGKQISASPSVKSSVNPAGSGSPKL--PAKYMQLAECFDSLDAVIRLLKL 127
             P  P  ++ +    +  +P+ +     A  G P L  P KY  L E F S+D ++ +L  
Sbjct:   163 PSTPDAKVPTEQPCVEKAPAYQRFHALAQPGLPGLVLPYKYQVLVEMFRSMDTIVSMLHN 222

Query:   128 KCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKK---VLTFDEKTSCMKPDL 184
             +  + TF  +   ++ +  +RF   ++ Q+K + P   + ++   V TF  K S  + D 
Sbjct:   223 RSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPTSYRFRQECNVPTF--KDSIKRSDY 280

Query:   185 HVTVNAD-AIECDGKSKCNSKNL-NLRTVFRARLMDFLKDHPE---GDEIPEETLPEPFN 239
              +T+      E  G ++  +  L   R VFR  L++ +K+  +       P   +P+   
Sbjct:   281 QLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDD-Q 339

Query:   240 RSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLL---NIVKAPS-ISMVT 295
              +R   + N V +   + PA+ P     E+   +      ++ L    + KA S +++ +
Sbjct:   340 LTRWHPRFN-VDEVPDIEPAELPQPPVTEKLTTAQEVLARARSLMTPKMEKALSNLALRS 398

Query:   296 GTSASASDNQQPIVAS 311
                 S   +  P+ A+
Sbjct:   399 AEPGSPGTSTPPLPAT 414

GO:0000076 "DNA replication checkpoint" evidence=ISO;IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007090 "regulation of S phase of mitotic cell cycle" evidence=IDA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=ISO;IDA

ZFIN|ZDB-GENE-070111-1 cdt1 "chromatin licensing and DNA replication factor 1" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
 Identities = 52/207 (25%), Positives = 89/207 (42%)

Query:    26 MSNQNPNP----TQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAG 81
             +S  +P P    T+L ++    +        R A  + E  KAA+T P   P+++ +   
Sbjct:   245 VSTPSPGPVSTLTELKARLDAAREISAKVQQRKAERVIEEAKAAETQPATEPQEREKLPA 304

Query:    82 KQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKI 141
              Q     ++   V P  +    LP +Y  LAE F SL+ ++ +L  +  + TFT +   +
Sbjct:   305 YQ--RYHTLAQDVPPGLT----LPYQYKLLAEMFRSLETIVAMLFNRSETVTFTKVKQGV 358

Query:   142 ECLTDRRFSLGHLAQLKFILPEVI---QIKKVLTFDEKTSCMKPDLHVTVNADAIECDGK 198
             + +  +RF   HL Q+K + P      Q K +++F          L V    D  E  G 
Sbjct:   359 QDMMRKRFEESHLGQIKAVYPSAYTFRQEKNIISFSATAKRSSYQLTVEPVIDE-EFKGV 417

Query:   199 SKCNSKN--LNLRTVFRARLMDFLKDH 223
                 S +  L  R +F   L++ +K H
Sbjct:   418 RPVLSASRLLERRHIFHQNLVEIVKGH 444

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0000996 dup "double parked" [Drosophila melanogaster (taxid:7227)]

 Score = 117 (46.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
 Identities = 36/140 (25%), Positives = 64/140 (45%)

Query:    33 PTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQTNPQQPPKDQIESAGKQISASPSVKS 92
             PT++   TP+K      R++ ++   K +  +   N    P   +E     + A     S
Sbjct:   257 PTKIPPPTPDKHELMSPRHTDVS---KRLLFSPAKNGS--PVKLVE-----VPAYKRYAS 306

Query:    93 SVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLG 152
              V  + +G   LP KY  L + F  LD+V+ +   +  + TF  + P ++ +  + F+  
Sbjct:   307 LVESSRAGQLPLPYKYRHLLDVFKGLDSVVAMFHNRKETITFKKLKPAVQRMLRKNFTET 366

Query:   153 HLAQLKFILPEVIQIKKVLT 172
             HLAQ+K I P+     +V T
Sbjct:   367 HLAQIKHIYPDAFIFSQVKT 386

GO:0007304 "chorion-containing eggshell formation" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005664 "nuclear origin of replication recognition complex" evidence=NAS;IDA

GO:0000076 "DNA replication checkpoint" evidence=IMP

GO:0006260 "DNA replication" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0003677 "DNA binding" evidence=NAS

GO:0006261 "DNA-dependent DNA replication" evidence=NAS

GO:0005657 "replication fork" evidence=IDA

GO:0007307 "eggshell chorion gene amplification" evidence=TAS

GO:0051298 "centrosome duplication" evidence=IMP

GO:0051306 "mitotic sister chromatid separation" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0042023 "DNA endoreduplication" evidence=IMP

UNIPROTKB|I3L5Z3 PRG4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 100 (40.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 62/278 (22%), Positives = 114/278 (41%)

Query:   258 PADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDN-QQPIVASHFSSR 316
             PA   ++AS     +  PT       N  K+   S V  T  +  ++ ++P V +  +  
Sbjct:   831 PAPITSEASTSTTTMEPPTTPK----NSAKSTPESAVEPTPKAVENSPKEPTVPT--TKA 884

Query:   317 RHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSS 376
                ++  + + A+ K  E+     +I   TT A +         EE  S + I+  +++S
Sbjct:   885 PTVTKPEMTTRAKDKDTEK--DMYTIPEMTTAAPKTVTETAIKTEEKASESKITTTQVTS 942

Query:   377 KSTSKENCLTYCASPTRLSQSCPPV--TPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTP 434
               T  E+  T   +  + +   P V  T  K  +   SK      +  +++T ++ V+TP
Sbjct:   943 TPT--EDTTTSSKTTLKPTTLVPKVMTTTKKTTEKAMSKPEQTTSIPKDRATNSQ-VTTP 999

Query:   435 ARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFD-TPVKNATVEHKL 493
              +    T A  +P      P+      P K T  PP S T    K   T V  AT++   
Sbjct:  1000 -KPPKPTKAPKKPTST-KKPKAPKGRKP-KTTPTPPKSTTSVLPKTSPTAVAEATLQTTT 1056

Query:   494 NEDISVDGDVLDILPENLIQSIREKERKFMEERDPAIS 531
                 +++ +++DI P+N      E E+  +  R P ++
Sbjct:  1057 IPQQTLNSEIIDINPKNEDADTAEGEKPQLIPRPPVLT 1094

GO:0030247 "polysaccharide binding" evidence=IEA

GO:0006955 "immune response" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_V0549 hypothetical protein (564 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	630
cd08674	185	cd08674, Cdt1_m, The middle winged helix fold of r	1e-45
cd08767	126	cd08767, Cdt1_c, The C-terminal fold of replicatio	5e-36
pfam08839	163	pfam08839, CDT1, DNA replication factor CDT1 like	1e-31
smart01075	164	smart01075, CDT1, DNA replication factor CDT1 like	3e-23

>gnl|CDD|176571 cd08674, Cdt1_m, The middle winged helix fold of replication licensing factor Cdt1 binds geminin to inhibit binding of the MCM complex to origins of replication and DNA

 Score =  159 bits (405), Expect = 1e-45
 Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 5/178 (2%)

Query: 91  KSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFS 150
             S+  +   S KLP KY  LAE F SLD ++RLL  +  + TF  + P +E +T RRFS
Sbjct: 6   YHSLASSVRPSLKLPEKYEVLAELFRSLDTIVRLLFNRKETCTFDKLKPAVERMTRRRFS 65

Query: 151 LGHLAQLKFILPEVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKSKCNSKN----L 206
             HLAQ+K I PE   +++    DE + C KPD  +T+  + +E          +    L
Sbjct: 66  EKHLAQIKHIYPEAYTLRQEKNHDEGSLCKKPDYQLTLEPNLVEGLELGGSPKLSESRLL 125

Query: 207 NLRTVFRARLMDFLKDHPEGDEIPEET-LPEPFNRSRSDLQLNMVKKSTSLTPADSPT 263
             R VFR+RL+DF+K H E   I  +   P P ++         ++    + PA+ P 
Sbjct: 126 ARRQVFRSRLLDFVKAHHEEFLISLDPPPPIPDDKLTRWHPKFDLESVPDIEPAELPQ 183

Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the origin recognition complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replication origins in the G phase, ORC first binds origin DNA and triggers the binding of Cdc6 and Cdt1. These two factors recruit a putative replicative helicase and the MCM2-7. The MCM2-7 complex promotes the unwinding of DNA origins, and the binding of additional factors to initiate the DNA replication in S-phase. Cdt1 is present during G1 and early S phase of the cell cycle and degraded during the late S, G2, and M phases. The winged helix fold structure of Cdt1_m is similar to the structures of Cdt1_c and other archaeal homologues of the eukaryotic replication initiator, without apparent sequence similarity. Length = 185

>gnl|CDD|176572 cd08767, Cdt1_c, The C-terminal fold of replication licensing factor Cdt1 is essential for Cdt1 activity and directly interacts with MCM2-7 helicase

 Score =  131 bits (331), Expect = 5e-36
 Identities = 48/126 (38%), Positives = 75/126 (59%), Gaps = 1/126 (0%)

Query: 502 DVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSV 561
           + L  +P++L++ IR KE     E+     + + RR+M A LP+L  ++  +F S K++V
Sbjct: 2   EALKGVPKSLLERIRAKEAAKALEKMTRRPEQEKRRRMYARLPELARILRNIFVSEKKTV 61

Query: 562 ITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPES 621
           +  EEL++K+ +S+  I  R EVEE + L+ EL P+WISEK    GD L    K+   E 
Sbjct: 62  LPLEELVYKLQASYPSILSRGEVEEHLRLLAELAPDWISEKSLRKGDYLKIDKKVD-LEK 120

Query: 622 IRARLE 627
           +R RLE
Sbjct: 121 VRKRLE 126

Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the Origin Recognition Complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replication origins in the G phase, ORC first binds origin DNA and triggers the binding of Cdc6 and Cdt1. These two factors recruit a putative replicative helicase and the MCM2-7. The MCM2-7 complex promotes the unwinding of DNA origins, and the binding of additional factors to initiate the DNA replication in S-phase. Cdt1 is present during G1 and early S phase of the cell cycle and is degraded during the late S, G2, and M phases. The winged helix fold structure of Cdt1_m is similar to the structures of Cdt1_c and archaeal homologues of the eukaryotic replication initiator, without apparent sequence similarity. Length = 126

>gnl|CDD|220037 pfam08839, CDT1, DNA replication factor CDT1 like

 Score =  119 bits (301), Expect = 1e-31
 Identities = 58/127 (45%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
           LP KY  LAE F  LD V+R+L  +   PTF  + P ++ ++ +RFS  HLAQ+K I PE
Sbjct: 1   LPEKYEVLAEFFKGLDTVVRMLHNRGEKPTFPKLKPAVQRMSRKRFSEDHLAQIKHIYPE 60

Query: 164 VIQIK--KVLTFDEKTSCMKPDLHVTVNADAIECDG-KSKCNSKNLNLRTVFRARLMDFL 220
            I+IK  KV TF E T CMK  L +  N D I  DG K    S+ L  R +FR  L+DF+
Sbjct: 61  AIEIKQEKVPTFGEGTKCMKYQLTIEPNLDEIAEDGAKRLNASRLLERRQIFRRILVDFV 120

Query: 221 KDHPEGD 227
           K H E  
Sbjct: 121 KKHHEEF 127

CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin. Length = 163

>gnl|CDD|215014 smart01075, CDT1, DNA replication factor CDT1 like

 Score = 96.7 bits (241), Expect = 3e-23
 Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 5/127 (3%)

Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
           LP KY  LAE F  LD ++ +L  +  +PTF  + P ++ LT +RFS  HLAQ+K I PE
Sbjct: 1   LPEKYEVLAEMFKGLDTIVAMLLNRNETPTFAKLKPGVQNLTRKRFSEDHLAQIKHIYPE 60

Query: 164 VIQIKK---VLTFDEKTSCMKPDLHVTVNADAIECDGK--SKCNSKNLNLRTVFRARLMD 218
            I+ K+   V TF   T      L +  N +  +      S   S+ L  R VFR +L+ 
Sbjct: 61  AIEFKQEKNVKTFGSGTKVSTYQLTIEPNLEDEDRSKVRPSLNASRLLERRKVFRRKLVK 120

Query: 219 FLKDHPE 225
            +K+H +
Sbjct: 121 IVKEHHQ 127

CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	630
KOG4762	498	consensus DNA replication factor [Replication, rec	100.0
cd08674	185	Cdt1_m The middle winged helix fold of replication	100.0
PF08839	163	CDT1: DNA replication factor CDT1 like; InterPro:	100.0
cd08767	126	Cdt1_c The C-terminal fold of replication licensin	100.0
KOG4762	498	consensus DNA replication factor [Replication, rec	99.52

>KOG4762 consensus DNA replication factor [Replication, recombination and repair]

Probab=100.00  E-value=5.3e-54  Score=459.61  Aligned_cols=334  Identities=28%  Similarity=0.380  Sum_probs=270.3

Q ss_pred             CchhHHHHHHHHhhHHHHHHHHHhcCCCCchhchhHHHHHHhhcccccchhhhhhhhccccEEEEEEEeccC-CCCCCCC
Q 006819          104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDE-KTSCMKP  182 (630)
Q Consensus       104 LP~KYr~LaElFr~mDTvvsML~nRkE~~TF~Klk~~VE~MtrRrF~~~HLAQIK~IyPeAy~~~qek~~d~-~S~~~k~  182 (630)
                      |||||+.|+++|++||++++|+|+|+++|||.+|..+|+.|+|++|+..||||||||||++|.|++.+.+.. +++.+..
T Consensus       140 lp~ky~~L~kvF~~~d~~~~~~h~~~~~~t~~~L~~~v~~~~r~~fsn~hl~qIksv~p~s~~i~~~~t~~~f~~~~~~~  219 (498)
T KOG4762|consen  140 LPEKYRALRKVFRSMDGIVAKAHPQNRKPTFELLPEPVNRMFRKSFSNTHLAQIKSLYPESYIIRQLETIQRFKAGAKLD  219 (498)
T ss_pred             chHHHHHHHHHHHHhhhhhhhcccccCCCchhhccchhhhhhhcccccchhhhhhcccccceeechhhhhhccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998854 9999999


Q ss_pred             CeeEEEeecccccC--CCCCccchhhHHHHHHHHHHHHH--HHhCCCC--------CCCCCCCCCC---CCCCCchhhhh
Q 006819          183 DLHVTVNADAIECD--GKSKCNSKNLNLRTVFRARLMDF--LKDHPEG--------DEIPEETLPE---PFNRSRSDLQL  247 (630)
Q Consensus       183 d~qLtL~p~~~E~~--~~~~s~S~lLeRRrvF~~~Lld~--vK~HHe~--------~dIPEa~LPe---pFN~~~~~~~~  247 (630)
                      +|+|++.|++.+..  .....++..++|+++|-..++.+  ++.||.+        +.++|.+|.+   +|+..+..   
T Consensus       220 ~y~l~i~p~l~~~~~~~~~~~~~~~~~r~q~~s~~~~~~~~ik~~~~~~~~~lsp~~Vd~e~~ltr~~~~f~~~~~~---  296 (498)
T KOG4762|consen  220 DYELIIKPNLSQENGAVPQPVKSASTPRKQYLSPELFLFTPIKSHHKQALPSLSPAIVDGEESLTRTHPEFALEPHV---  296 (498)
T ss_pred             cceEeccccccccccccccccccccccchhhhhhhhhccCcCchhhhcccccCCcccccchhhhhhccccccccccc---
Confidence            99999999988743  36777888999999999999998  9999998        5556888877   58877665   


Q ss_pred             hhhcccCCCCCCCCCCchhhhhcccCCCccccccccccccCCccccccccCCCCcccccchhhccccc-ccccchhhhhh
Q 006819          248 NMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIVASHFSS-RRHFSQKFVNS  326 (630)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~~~~~~shl~~-rr~fSqK~~~t  326 (630)
                             .+.++.++                                .    ++..+....++..++. +-.+++.    
T Consensus       297 -------~i~~s~~~--------------------------------~----~~~~ek~~~a~e~~s~~~~~~~p~----  329 (498)
T KOG4762|consen  297 -------KICHSEFL--------------------------------E----PPGTEKDSTANEPLSDFRNDKSPR----  329 (498)
T ss_pred             -------cccccccC--------------------------------C----CCcccccccCcCcccccccccCcc----
Confidence                   22222222                                1    3445555555444443 3333333    


Q ss_pred             HHHHhhhhhccCCcccCCCCCCCCchhhhcccchhhhhhhhhhhhhhhccccccccccccccCCCCCCCCCCCCCCCccc
Q 006819          327 LAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSKSTSKENCLTYCASPTRLSQSCPPVTPVKE  406 (630)
Q Consensus       327 ~~Ek~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~q~~~~~tp~~~  406 (630)
                       +++                      +++                       .+..+                       
T Consensus       330 -l~~----------------------~~~-----------------------~~~~~-----------------------  340 (498)
T KOG4762|consen  330 -LPL----------------------SVD-----------------------EYPED-----------------------  340 (498)
T ss_pred             -hhh----------------------ccc-----------------------ccccc-----------------------
Confidence             222                      111                       00000                       


Q ss_pred             cCCCCCCCccCcccccCCCCCCccCCCccccccCCCCCCCCCcccCCCCcccCCCCCCcCCCCCCccccccccCCCcccc
Q 006819          407 IDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKN  486 (630)
Q Consensus       407 i~~~~s~~~~~~~~~~~~stP~k~~stp~~lma~TPa~~~PkR~l~~~~~~s~~~~~k~arrp~~~r~L~~~~F~sp~k~  486 (630)
                                 +++..+.+.       |    ++.|+-                                          
T Consensus       341 -----------~rS~~s~~s-------p----~tvp~s------------------------------------------  356 (498)
T KOG4762|consen  341 -----------LRSMRSDGS-------P----STVPES------------------------------------------  356 (498)
T ss_pred             -----------cccccccCC-------C----ccCCCC------------------------------------------
Confidence                       000000000       1    111100                                          


Q ss_pred             hhhhccccccccCCCccccCCchhHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhchhHHHHHHHHHHHhhccccccHHH
Q 006819          487 ATVEHKLNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEE  566 (630)
Q Consensus       487 ~~~~~~~~~~~s~d~~~l~~vpesLl~sIrekE~~~~~~q~t~~~~~~~r~~~ia~LP~L~~iir~IF~S~krs~ITKEE  566 (630)
                               ....+...+++++++|+++||+||+++.+++|+++++|++|.+++++||+||||||+||+|++|++|||||
T Consensus       357 ---------~~~~~~s~ls~~~~sLlErIRaKEa~k~~~~m~~~~~~~~r~~~l~~Lp~l~riIr~vF~Serr~~it~e~  427 (498)
T KOG4762|consen  357 ---------TSKADSSQLSGRASSLLERIRAKEAAKRLAQMTERKEQERREQRLALLPELVRIIRSVFVSERRRVITMEE  427 (498)
T ss_pred             ---------CcccChhhhccchHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHHhhHHHHHHHHHHHHhccccceeHHH
Confidence                     01134556789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccCChhHHHHHHHHHHHhcccchhhcccCCCCeEEEeccCCChHHHHHHhhhcC
Q 006819          567 LIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEESK  630 (630)
Q Consensus       567 LvhKIias~~~I~d~gEvEEqL~LLeeLvPDWIS~k~i~sGD~~~ki~K~~dl~sVraRL~e~~  630 (630)
                      +|++|++|+..|++++|||+||.||.+++|||||.+.++. |+|+||+|++|.+.|++||++++
T Consensus       428 iv~ki~~s~~~i~s~~eve~hL~LL~e~lP~WiS~~~~~~-d~~v~i~K~~~~~~i~~rl~~e~  490 (498)
T KOG4762|consen  428 IVKKIQASDSNITSPREVEKHLSLLSELLPDWISEHKSSN-DQLVKISKIADGEHIRARLEEET  490 (498)
T ss_pred             HHHHHHhcccccCCHHHHHHHHHHHHHHhHHHHhHHhhcC-ceEEEeehhccHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999997 99999999999999999998763

>cd08674 Cdt1_m The middle winged helix fold of replication licensing factor Cdt1 binds geminin to inhibit binding of the MCM complex to origins of replication and DNA

Probab=100.00  E-value=5.7e-38  Score=302.74  Aligned_cols=136  Identities=40%  Similarity=0.574  Sum_probs=129.7

Q ss_pred             CCCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCCchhchhHHHHHHhhcccccchhhhhhhhccccEEEEEEEeccCC
Q 006819           97 AGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEK  176 (630)
Q Consensus        97 ~~~~~L~LP~KYr~LaElFr~mDTvvsML~nRkE~~TF~Klk~~VE~MtrRrF~~~HLAQIK~IyPeAy~~~qek~~d~~  176 (630)
                      ...+++.||+||+.|+++|++|||+++||++|++.+||.|||++||.|++|+|++.||||||||||++|.|+|+++++++
T Consensus        12 ~~~~~~~lP~ky~~L~~~F~~ldtv~~~l~~R~~~~tf~~ik~~Ve~~~~r~f~~~~LaQI~~l~P~~y~~~~~~~~~~~   91 (185)
T cd08674          12 SVRPSLKLPEKYEVLAELFRSLDTIVRLLFNRKETCTFDKLKPAVERMTRRRFSEKHLAQIKHIYPEAYTLRQEKNHDEG   91 (185)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHCCCccHHHhhhhheeccCceeEEEEEeccCc
Confidence            35568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCeeEEEeecccccC----CCCCccchhhHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 006819          177 TSCMKPDLHVTVNADAIECD----GKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEE  232 (630)
Q Consensus       177 S~~~k~d~qLtL~p~~~E~~----~~~~s~S~lLeRRrvF~~~Lld~vK~HHe~~dIPEa  232 (630)
                      ++|++++|||+|+|+++|+.    ...++++.+++||++||++|++||++||++++++++
T Consensus        92 ~~~~~~~~~l~i~p~~~e~~~~~~~~~~~~~~~~~R~~~F~~~L~~~vk~hh~~fl~~~~  151 (185)
T cd08674          92 SLCKKPDYQLTLEPNLVEGLELGGSPKLSESRLLARRQVFRSRLLDFVKAHHEEFLISLD  151 (185)
T ss_pred             ccccccceEEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            99999999999999999875    257788999999999999999999999999999888

Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the origin recognition complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative

>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin

Probab=100.00  E-value=2.5e-36  Score=285.00  Aligned_cols=149  Identities=33%  Similarity=0.555  Sum_probs=103.2

Q ss_pred             CchhHHHHHHHHhhHHHHHHHHHhcCCCCchhchhHHHHHHhhcccccchhhhhhhhccccEEEEEEE-eccCCCCCCCC
Q 006819          104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVL-TFDEKTSCMKP  182 (630)
Q Consensus       104 LP~KYr~LaElFr~mDTvvsML~nRkE~~TF~Klk~~VE~MtrRrF~~~HLAQIK~IyPeAy~~~qek-~~d~~S~~~k~  182 (630)
                      ||++|+.|+++|++||||++||++|++++||++||++||+|+||+|++.||||||||||+||.|+|++ ....++.+...
T Consensus         1 LP~~y~~L~~~F~~ldtv~~~l~~R~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI~~i~P~a~~~~~~~~~~~~~~~~~~~   80 (163)
T PF08839_consen    1 LPEKYEFLAELFRALDTVVSMLRNRKETPTFQKIKPSVENMTKRRFTEEHLAQIKYIYPEAYSLKQEKKVPTFDSGSKCM   80 (163)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTT---BHHHHHHHHHHHHSS---HHHHHHHHHH-GGGEEEEEEE--SS--S---GG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcCHHHHHHHHHhCcccEEEeeeeccccCCcccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999887 43445555555


Q ss_pred             CeeEEEeecccc----cCCCCCccchhhHHHHHHHHHHHHHHHhCCCC-----CCCCCCCCCC---CCCCCchhhhhhhh
Q 006819          183 DLHVTVNADAIE----CDGKSKCNSKNLNLRTVFRARLMDFLKDHPEG-----DEIPEETLPE---PFNRSRSDLQLNMV  250 (630)
Q Consensus       183 d~qLtL~p~~~E----~~~~~~s~S~lLeRRrvF~~~Lld~vK~HHe~-----~dIPEa~LPe---pFN~~~~~~~~~~~  250 (630)
                      .|+|+|.+++.+    +.....+++.+++||++||++|++||+.||++     ..-|++.|.+   .||.+.++      
T Consensus        81 ~~~l~I~p~~~~~~~~~~~~~~~~~~~~~R~~~F~~~L~~~vk~~h~~fL~~l~~~~~~~l~rwHp~F~~~~~p------  154 (163)
T PF08839_consen   81 KYQLVIEPNLDDVEASDGRKRLSPSRLLERRQVFRQKLLEFVKEHHKEFLASLNPPPDDKLTRWHPKFNLDSCP------  154 (163)
T ss_dssp             GEEEEEEE-SS---TT--SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTS-CCC--S--TTS-CCCS-------
T ss_pred             CcceEEEeccccccccccccCCChhhHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCchhhHhhcCCCCCcccCC------
Confidence            667777777653    22246678899999999999999999999998     1228889988   99999998      


Q ss_pred             cccCCCCCCCCC
Q 006819          251 KKSTSLTPADSP  262 (630)
Q Consensus       251 ~~~~~~~~~~~~  262 (630)
                          +|.||++|
T Consensus       155 ----~I~~a~LP  162 (163)
T PF08839_consen  155 ----DIPPAELP  162 (163)
T ss_dssp             ------------
T ss_pred             ----CCCCCCCC
Confidence                88888887

Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.

>cd08767 Cdt1_c The C-terminal fold of replication licensing factor Cdt1 is essential for Cdt1 activity and directly interacts with MCM2-7 helicase

Probab=100.00  E-value=2.4e-34  Score=262.85  Aligned_cols=125  Identities=37%  Similarity=0.510  Sum_probs=121.4

Q ss_pred             ccccCCchhHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhchhHHHHHHHHHHHhhccccccHHHHHHHHHhhccccCCh
Q 006819          502 DVLDILPENLIQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDR  581 (630)
Q Consensus       502 ~~l~~vpesLl~sIrekE~~~~~~q~t~~~~~~~r~~~ia~LP~L~~iir~IF~S~krs~ITKEELvhKIias~~~I~d~  581 (630)
                      +.|+|+|++||++||+||+++.+++||+.+.+++|++|+++||++||+||+||+|++|++||||+|+|||++||++++++
T Consensus         2 ~~lkg~~~sLLerIr~ke~~~~~~~~t~~~~~~kr~~~~~rLP~la~~v~~if~s~~k~~l~~e~l~~kl~~S~~~~~s~   81 (126)
T cd08767           2 EALKGVPKSLLERIRAKEAAKALEKMTRRPEQEKRRRMYARLPELARILRNIFVSEKKTVLPLEELVYKLQASYPSILSR   81 (126)
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhHHHHHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcccchhhcccCCCCeEEEeccCCChHHHHHHhh
Q 006819          582 REVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLE  627 (630)
Q Consensus       582 gEvEEqL~LLeeLvPDWIS~k~i~sGD~~~ki~K~~dl~sVraRL~  627 (630)
                      ||||+||+||+|++||||+.+.++ |++|++++|..|+++|++||+
T Consensus        82 ~E~E~~l~LL~el~P~Wis~~~~~-~~~~lk~~k~~~~~~V~~rL~  126 (126)
T cd08767          82 GEVEEHLRLLAELAPDWISEKSLR-KGDYLKIDKKVDLEKVRKRLE  126 (126)
T ss_pred             HHHHHHHHHHHHhChHHheeeeeC-CceEEEECccccHHHHHHHhC
Confidence            999999999999999999999997 688999999999999999995

Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the Origin Recognition Complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replicat

>KOG4762 consensus DNA replication factor [Replication, recombination and repair]

Probab=99.52  E-value=2.5e-14  Score=155.29  Aligned_cols=141  Identities=35%  Similarity=0.470  Sum_probs=133.1

Q ss_pred             CCCCchhHHHHHHHHhhHHHHHHHHHhcCCCCchhchhHHHHHHhhcccccchhhhhhhhccccEEEEEEEeccCCCCCC
Q 006819          101 SPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPEVIQIKKVLTFDEKTSCM  180 (630)
Q Consensus       101 ~L~LP~KYr~LaElFr~mDTvvsML~nRkE~~TF~Klk~~VE~MtrRrF~~~HLAQIK~IyPeAy~~~qek~~d~~S~~~  180 (630)
                      ...+|+.|.+|..+|+.+|.+.++...|+ .++|.+.++..+.||-|+|.+.|++|++||+|+++.+..++.+|++.+||
T Consensus        42 ~~k~~~~~~~l~~~~~~ld~~~~~q~~r~-~~l~~~~~~~~~s~ta~~~~~~~~~e~~~iip~~~~lk~~~~~d~~e~~~  120 (498)
T KOG4762|consen   42 RAKLPHENNILIKFFQVLDMSMGLQKLRG-KCLRSNRKSSIRSLTARILHYMHKPELDHIIPGLKELKRVLKFDEHECCM  120 (498)
T ss_pred             hhhcchhhhhHHHHHHHHHHhhhhhcccC-CcccccCCcchhhhhhcccccccccchhhhhhhhhhhhcccccccchhcc
Confidence            45899999999999999999999999999 99999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEeecccccCCCCCccchhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCch
Q 006819          181 KPDLHVTVNADAIECDGKSKCNSKNLNLRTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRS  243 (630)
Q Consensus       181 k~d~qLtL~p~~~E~~~~~~s~S~lLeRRrvF~~~Lld~vK~HHe~~dIPEa~LPepFN~~~~  243 (630)
                      +.+++..++.++++....+ ....|+++|++|+..+.++.+.|.+...++.+.|+++||....
T Consensus       121 k~~~~~~lna~~ve~s~~~-lp~ky~~L~kvF~~~d~~~~~~h~~~~~~t~~~L~~~v~~~~r  182 (498)
T KOG4762|consen  121 KPGLHESLNADLVEPSIRG-LPEKYRALRKVFRSMDGIVAKAHPQNRKPTFELLPEPVNRMFR  182 (498)
T ss_pred             cccccchhhhhhhccccCC-chHHHHHHHHHHHHhhhhhhhcccccCCCchhhccchhhhhhh
Confidence            9999999999999876544 6688999999999999999999999999999999999995543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	630
2wvr_C	546	Human Cdt1:geminin Complex Length = 546		7e-09

>pdb|2WVR|C Chain C, Human Cdt1:geminin Complex Length = 546

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 104 LPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFILPE 163
           LP KY  LAE F S+D ++ +L  +  +PTF  +   ++ +  RRF   ++ Q+K + P 
Sbjct: 186 LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEERNVGQIKTVYPA 245
Query: 164 VIQIKK---VLTFDEKTSCMKPDLHVTVNA-DAIECDGKSK--CNSKNLNLRTVFRARLM 217
             + ++   V TF + T   + D  +T+      E DG +     S+ L  R +F  +L+
Sbjct: 246 SYRFRQERSVPTFKDGTR--RSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLV 303
Query: 218 DFLKDH 223
           + +K+H
Sbjct: 304 EHVKEH 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	630
1wlq_C	201	CDT1 protein; coiled-coil; 2.80A {Mus musculus} SC	4e-27
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-17
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-14
3a4c_A	106	DNA replication factor CDT1; alpha-beta structure,	1e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10

>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} SCOP: a.4.5.52 PDB: 2zxx_C* Length = 201

 Score =  107 bits (269), Expect = 4e-27
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 6/158 (3%)

Query: 92  SSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSL 151
            ++   G     LP KY  L E F S+D ++ +L  +  + TF  +   ++ +  +RF  
Sbjct: 20  HALAQPGLPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEE 79

Query: 152 GHLAQLKFILPEVIQIKKVLTFDEKTSCMKPD---LHVTVNADAIECDGKSKCNSKNLNL 208
            ++ Q+K + P   + ++          +K     L +                +  L  
Sbjct: 80  RNVGQIKTVYPMSYRFRQECNVPTFKDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQR 139

Query: 209 RTVFRARLMDFLKDHPEGDEIPEETLPEPFNRSRSDLQ 246
           R VFR  L++ +K+     ++   +L  P       L 
Sbjct: 140 RQVFRQNLVERVKEQ---HKVFLASLNPPMAVPDDQLT 174

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 85.2 bits (209), Expect = 1e-17
 Identities = 55/306 (17%), Positives = 109/306 (35%), Gaps = 11/306 (3%)

Query: 21  KPKPEMSNQNPNPTQLASKTPEKQPSRRARNSRMALSLKEIRKAAQ-TNPQQPPKDQIES 79
           K  P         +     T  +  S   R   +   ++ ++ +AQ       P+ +   
Sbjct: 100 KSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRP 159

Query: 80  AGKQISASPSVKSSVNPAGSGSPKL--PAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSI 137
                  +P+ +     A  G P L  P KY  LAE F S+D ++ +L  +  +PTF  +
Sbjct: 160 EEPCGEKAPAYQRFHALAQPGLPGLVLPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKV 219

Query: 138 CPKIECLTDRRFSLGHLAQLKFILPEVI---QIKKVLTFDEKTSCMKPDLHVTVNADAIE 194
              ++ +  RRF   ++ Q+K + P      Q + V TF + T      L +    +   
Sbjct: 220 QRGVQDMMRRRFEERNVGQIKTVYPASYRFRQERSVPTFKDGTRRSDYQLTIEPLLEQEA 279

Query: 195 CDGKSKCN-SKNLNLRTVFRARLMDFLKDHPE----GDEIPEETLPEPFNRSRSDLQLNM 249
                +   S+ L  R +F  +L++ +K+H +              +   R      ++ 
Sbjct: 280 DGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLTRWHPRFNVDE 339

Query: 250 VKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTSASASDNQQPIV 309
           V           P    +   Q      +N     + KA S   +   + S+  + +P +
Sbjct: 340 VPDIEPAALPQPPATEKLTTAQEVLARARNLISPRMEKALSQLALRSAAPSSPGSPRPAL 399

Query: 310 ASHFSS 315
            +   +
Sbjct: 400 PATPPA 405

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 74.4 bits (181), Expect = 4e-14
 Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 4/177 (2%)

Query: 452 MTPENVSASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENL 511
                +S      L++    S    S     P   AT         +     L  + ++L
Sbjct: 366 RARNLISPRMEKALSQLALRSAAPSSPGSPRPALPAT---PPATPPAASPSALKGVSQDL 422

Query: 512 IQSIREKERKFMEERDPAISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKI 571
           ++ IR KE +    +     + + R Q +  LP+L  ++  +F S ++  ++ E    ++
Sbjct: 423 LERIRAKEAQKQLAQMTRCPEQEQRLQRLERLPELARVLRSVFVSERKPALSMEVACARM 482

Query: 572 ISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEE 628
           + S   I    E+E+ + L+ EL+P+W+S       D  V ++K      I ARL  
Sbjct: 483 VGSCCTIMSPGEMEKHLLLLSELLPDWLSLHRIR-TDTYVKLDKAADLAHITARLAH 538

>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A* Length = 106

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 1/98 (1%)

Query: 531 SQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNL 590
            + + R Q +  LP+L  ++  +F S ++  +T E +  +++ S        E+E+ + L
Sbjct: 3   PEQELRLQRLERLPELARVLRNVFVSERKPALTMEVVCARMVDSCQTALSPGEMEKHLVL 62

Query: 591 MLELVPEWISEKLSSCGDLLVCINKMTCPESIRARLEE 628
           + EL+P+W+S       D  V ++K      + ARL  
Sbjct: 63  LAELLPDWLSLH-RIRTDTYVKLDKAVDLAGLTARLAH 99

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 91/626 (14%), Positives = 182/626 (29%), Gaps = 168/626 (26%)

Query: 53  RMALSLKEIRKAAQTNPQQPPKDQ--------IESAGKQISASPSVKSSVNPAGSGSPKL 104
           +  LS +EI                       + S  +++     V+  V         L
Sbjct: 43  KSILSKEEIDHIIM----SKDAVSGTLRLFWTLLSKQEEM-----VQKFVEEV------L 87

Query: 105 PAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQLKFI--LP 162
              Y  L              K +   P+  +    IE   DR ++   +     +  L 
Sbjct: 88  RINYKFLMSPI----------KTEQRQPSMMTR-MYIEQR-DRLYNDNQVFAKYNVSRLQ 135

Query: 163 EVIQIKKVLTFDEKTSCMKPDLHVTVNADAIECDGKS-----KCNSKNLNLRTVFRARLM 217
             +++++ L        ++P  +V ++       GK+      C S  +  +  F+   +
Sbjct: 136 PYLKLRQAL------LELRPAKNVLIDGVL-GS-GKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 218 DFLKDHPEGDEIPEETLPEPFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQ------ 271
           +        +    ET+ E        L   +    TS +   S     +   Q      
Sbjct: 188 NL------KNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 272 VSSPTCQNSKLL--------NIVKAPSIS---MVTGTSASASDNQQPIVASHFSSRRHFS 320
           + S   +N  LL            A ++S   ++T      +D       +H S      
Sbjct: 238 LKSKPYENC-LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL----- 291

Query: 321 QKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTA--AIS--AVELSS 376
                +L   +    +   +   P   P             E  +T    +S  A  +  
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLP------------REVLTTNPRRLSIIAESIRD 339

Query: 377 KSTSKENCLTY-CASPTRLSQSCPPVTPVKEIDPMESKVSY------PIKVDSEQSTPAK 429
              + +N     C   T + +S      +  ++P E +  +      P         P  
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESS-----LNVLEPAEYRKMFDRLSVFPPSAH----IPTI 390

Query: 430 LVSTPARLMIGTPALHQPKRCYMTPENVSASSPNK--LTRRPPHSR-TLKSLKFDT--PV 484
           L+S    +                   V         + ++P  S  ++ S+  +    +
Sbjct: 391 LLS---LIWFDVI--------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 485 KNATVEHKL-----NEDISVDGDVLDILPENLIQSIREKERKF------MEERDPAISQA 533
           +N    H+      N   + D D  D++P  L Q        +      ++  +      
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSD--DLIPPYLDQYF------YSHIGHHLKNIEHP---- 487

Query: 534 KWRRQMIASLPKLFNMIHFLFQSIKRSVITKE------ELIHKIISSHLQITDRREVEEQ 587
               + +     +F    FL Q I+               + ++      I D     E+
Sbjct: 488 ----ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 588 M-NLMLELVPEWISEKL--SSCGDLL 610
           + N +L+ +P+ I E L  S   DLL
Sbjct: 544 LVNAILDFLPK-IEENLICSKYTDLL 568

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	630
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	100.0
1wlq_C	201	CDT1 protein; coiled-coil; 2.80A {Mus musculus} PD	100.0
2zxx_C	197	DNA replication factor CDT1; coiled-coil, cell cyc	100.0
3a4c_A	106	DNA replication factor CDT1; alpha-beta structure,	99.95

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A*

Probab=100.00  E-value=6.1e-67  Score=567.16  Aligned_cols=360  Identities=23%  Similarity=0.364  Sum_probs=139.8

Q ss_pred             chhHHhhhhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCCchhchhHHHHHHhhcccccch
Q 006819           74 KDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGH  153 (630)
Q Consensus        74 ~~~~~~~~r~~~~~ps~~~~~~~~~~~~L~LP~KYr~LaElFr~mDTvvsML~nRkE~~TF~Klk~~VE~MtrRrF~~~H  153 (630)
                      ....++|+||.++...        +.+++.||+||+.|+++|++||||++||++|++++||.|||++||+|++|+|++.|
T Consensus       164 ~~~~Pay~Rf~~l~~~--------~~~~l~LP~ky~~L~elF~alDtvlslL~~R~~~~tf~kI~~~Ve~mtkrrFt~~h  235 (546)
T 2wvr_C          164 GEKAPAYQRFHALAQP--------GLPGLVLPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEERN  235 (546)
T ss_dssp             ---CCHHHHTHHHHCC--------SSSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHSSCCCHHH
T ss_pred             cccCcHHHHHHHhccC--------CCccccCcHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHcCCccHHH
Confidence            4477889999998875        55789999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccccEEEEEEEec-cCCCCCCCCCeeEEEeecccccCC---CCCccchhhHHHHHHHHHHHHHHHhCCCC---
Q 006819          154 LAQLKFILPEVIQIKKVLTF-DEKTSCMKPDLHVTVNADAIECDG---KSKCNSKNLNLRTVFRARLMDFLKDHPEG---  226 (630)
Q Consensus       154 LAQIK~IyPeAy~~~qek~~-d~~S~~~k~d~qLtL~p~~~E~~~---~~~s~S~lLeRRrvF~~~Lld~vK~HHe~---  226 (630)
                      ||||+||||+||.|+|++.. .++++|++++|||+|.|++.++.+   ..++.+.+++||++||++|++||++||++   
T Consensus       236 LaQI~~I~PeaY~l~~~k~~~~f~s~~k~~dyqL~I~P~l~~e~~~~~~~~s~s~l~~Rr~~Fr~rL~~~Vk~hHe~fL~  315 (546)
T 2wvr_C          236 VGQIKTVYPASYRFRQERSVPTFKDGTRRSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLA  315 (546)
T ss_dssp             HHHHHHHCGGGEEEEEC---------------CEEEEECCCCCTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccchhhhhhhhccccccccccCCCceEEEecCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999765 558899999999999997765322   34677889999999999999999999998   


Q ss_pred             -----CCCCCCCCCC---CCCCCchhhhhhhhcccCCCCCCCCCCchhhhhcccCCCccccccccccccCCccccccccC
Q 006819          227 -----DEIPEETLPE---PFNRSRSDLQLNMVKKSTSLTPADSPTDASVEQQQVSSPTCQNSKLLNIVKAPSISMVTGTS  298 (630)
Q Consensus       227 -----~dIPEa~LPe---pFN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~  298 (630)
                           ++||++.|++   .||.+.++          +|.|+.+|          +                         
T Consensus       316 sL~pp~~Ip~e~L~rwhp~Fdle~vp----------dI~pa~LP----------q-------------------------  350 (546)
T 2wvr_C          316 SLSPAMVVPEDQLTRWHPRFNVDEVP----------DIEPAALP----------Q-------------------------  350 (546)
T ss_dssp             TTTTSCCCCGGGCCSCCTTCCSTTSC----------CCCCCCCC----------C-------------------------
T ss_pred             hcCCcccCchhhccccCCCCCccccC----------CccccccC----------C-------------------------
Confidence                 7999999999   56666655          67777777          1                         


Q ss_pred             CCCcccccchhhccccc-ccccchhhhhhHHHHhhhhhccCCcccCCCCCCCCchhhhcccchhhhhhhhhhhhhhhccc
Q 006819          299 ASASDNQQPIVASHFSS-RRHFSQKFVNSLAEKKKAERISSGVSIEPSTTPALEPCLRKISSIEETCSTAAISAVELSSK  377 (630)
Q Consensus       299 ~~~~~e~~~~~~shl~~-rr~fSqK~~~t~~Ek~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~l~~~p~~~~~~  377 (630)
                       ++..+..++++..|.. +.+||++     +|+  +                    +.          .|+.        
T Consensus       351 -pP~~~k~sSa~evL~~arslls~~-----mek--a--------------------ls----------~la~--------  384 (546)
T 2wvr_C          351 -PPATEKLTTAQEVLARARNLISPR-----MEK--A--------------------LS----------QLAL--------  384 (546)
T ss_dssp             -CCC----------------------------------------------------------------------------
T ss_pred             -CccccCCCcHHHHHHhcccccChh-----hHh--H--------------------HH----------HHHh--------
Confidence             2233333456666666 7788876     555  2                    22          2221        


Q ss_pred             cccccccccccCCCCCCCCCCCCCCCccccCCCCCCCccCcccccCCCCCCccCCCccccccCCCCCCCCCcccCCCCcc
Q 006819          378 STSKENCLTYCASPTRLSQSCPPVTPVKEIDPMESKVSYPIKVDSEQSTPAKLVSTPARLMIGTPALHQPKRCYMTPENV  457 (630)
Q Consensus       378 ~~~k~~~~~~~~~~~~~~q~~~~~tp~~~i~~~~s~~~~~~~~~~~~stP~k~~stp~~lma~TPa~~~PkR~l~~~~~~  457 (630)
                         +            .              +++             ++|..  + ...|.+.+++. +|          
T Consensus       385 ---k------------~--------------a~~-------------~Sp~~--s-~~~lp~~~~~t-~~----------  408 (546)
T 2wvr_C          385 ---R------------S--------------AAP-------------SSPGS--P-RPALPATPPAT-PP----------  408 (546)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---c------------c--------------cCC-------------CCCCC--C-CccccCCCCCC-Cc----------
Confidence               0            0              000             00000  0 01111111110 00          


Q ss_pred             cCCCCCCcCCCCCCccccccccCCCcccchhhhccccccccCCCccccCCchhHHHHHHHHHHHHHHhhCchhHHHHHHH
Q 006819          458 SASSPNKLTRRPPHSRTLKSLKFDTPVKNATVEHKLNEDISVDGDVLDILPENLIQSIREKERKFMEERDPAISQAKWRR  537 (630)
Q Consensus       458 s~~~~~k~arrp~~~r~L~~~~F~sp~k~~~~~~~~~~~~s~d~~~l~~vpesLl~sIrekE~~~~~~q~t~~~~~~~r~  537 (630)
                              +..                                ...|+|+|++||++||+||+.+.+++++..+++++|+
T Consensus       409 --------~~~--------------------------------~s~lKGvs~sLLERIRaKEa~kk~e~~t~~p~~~~r~  448 (546)
T 2wvr_C          409 --------AAS--------------------------------PSALKGVSQDLLERIRAKEAQKQLAQMTRCPEQEQRL  448 (546)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------ccC--------------------------------cchhccCCHHHHHHHHHHHHHHHHHhhccCHhHHHHH
Confidence                    000                                1223589999999999999999999999999999999


Q ss_pred             HHhhchhHHHHHHHHHHHhhccccccHHHHHHHHHhhccccCChhHHHHHHHHHHHhcccchhhcccCCCCeEEEeccCC
Q 006819          538 QMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDLLVCINKMT  617 (630)
Q Consensus       538 ~~ia~LP~L~~iir~IF~S~krs~ITKEELvhKIias~~~I~d~gEvEEqL~LLeeLvPDWIS~k~i~sGD~~~ki~K~~  617 (630)
                      +++++||+||||||+||+++++++|||++||++|++||..+++++|||+||+||++|+||||+.+.++ |++|||||+.+
T Consensus       449 ~~lsrLP~la~iL~~lF~s~kks~l~m~~lv~kI~~S~~~~ls~~EiEe~L~LL~el~PeWisi~~i~-g~~~lklnk~~  527 (546)
T 2wvr_C          449 QRLERLPELARVLRSVFVSERKPALSMEVACARMVGSCCTIMSPGEMEKHLLLLSELLPDWLSLHRIR-TDTYVKLDKAA  527 (546)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCceEHHHHHHHHHhhccccCCHHHHHHHHHHHHHhChHhheeeeeC-CceEEEeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999776 89999999999


Q ss_pred             ChHHHHHHhhhc
Q 006819          618 CPESIRARLEES  629 (630)
Q Consensus       618 dl~sVraRL~e~  629 (630)
                      |+++||+||+++
T Consensus       528 Dl~~Vr~rL~~~  539 (546)
T 2wvr_C          528 DLAHITARLAHQ  539 (546)
T ss_dssp             ------------
T ss_pred             CHHHHHHHHHHH
Confidence            999999999975

>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_C*

Probab=100.00  E-value=2.6e-46  Score=363.67  Aligned_cols=172  Identities=22%  Similarity=0.340  Sum_probs=159.0

Q ss_pred             CchhHHhhhhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCCchhchhHHHHHHhhcccccc
Q 006819           73 PKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLG  152 (630)
Q Consensus        73 ~~~~~~~~~r~~~~~ps~~~~~~~~~~~~L~LP~KYr~LaElFr~mDTvvsML~nRkE~~TF~Klk~~VE~MtrRrF~~~  152 (630)
                      -....++|+|+-++..+        +.++|+||+||+.|+|||+|||||++||+||+++|||+|||++||+|+||+|+++
T Consensus         9 ~~~~~pay~r~~~l~~~--------~~~~l~LP~kY~~L~e~F~~ldtv~~ml~~R~~~~Tf~~ik~~VE~~trr~F~~~   80 (201)
T 1wlq_C            9 CVEKAPAYQRFHALAQP--------GLPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEER   80 (201)
T ss_dssp             ---CCCHHHHTHHHHCC--------SSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHTSCCCHH
T ss_pred             CcccccHHHHHHHHhcC--------CCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHhcCCcCHH
Confidence            34567899999999886        6778999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccccEEEEEEEe-ccCCCCCCCCCeeEEEeecccccCC--CCCccchhhHHHHHHHHHHHHHHHhCCCC---
Q 006819          153 HLAQLKFILPEVIQIKKVLT-FDEKTSCMKPDLHVTVNADAIECDG--KSKCNSKNLNLRTVFRARLMDFLKDHPEG---  226 (630)
Q Consensus       153 HLAQIK~IyPeAy~~~qek~-~d~~S~~~k~d~qLtL~p~~~E~~~--~~~s~S~lLeRRrvF~~~Lld~vK~HHe~---  226 (630)
                      ||||||||||+||.|+|+++ ++++++|+..+|||+|.|++.+..+  +.++++.+++||++||++|+++||+||++   
T Consensus        81 hLaQIk~IyPeay~l~~~k~~~~f~s~~k~~~yqL~i~Pnv~~~~~~~~~ls~s~l~~Rr~~F~~~Ll~~Vk~~H~~FL~  160 (201)
T 1wlq_C           81 NVGQIKTVYPMSYRFRQECNVPTFKDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLA  160 (201)
T ss_dssp             HHHHHHHHCTTSEEEEEEECCSSCCSCCCGGGEEEEEEECSSCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCceEEEeeecccccccccccCcceEEEecccccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997 7889999999999999999886442  57889999999999999999999999998   


Q ss_pred             -----CCCCCCCCCC---CCCCCchhhhhhhhcccCCCCCCCCC
Q 006819          227 -----DEIPEETLPE---PFNRSRSDLQLNMVKKSTSLTPADSP  262 (630)
Q Consensus       227 -----~dIPEa~LPe---pFN~~~~~~~~~~~~~~~~~~~~~~~  262 (630)
                           +.||++.|++   .||.+.++          +|.+++||
T Consensus       161 sl~~pi~i~~d~l~RWHP~F~ld~vp----------~I~~a~LP  194 (201)
T 1wlq_C          161 SLNPPMAVPDDQLTRWHPRFNVDEVP----------DIEPAELP  194 (201)
T ss_dssp             TSSSCCCCCTTTCCSCCTTCCGGGSC----------CCCCCCCC
T ss_pred             hCCCCCcCChhhccccCCCCCcccCC----------CCCcCCCC
Confidence                 7899999999   99999999          99999999

>2zxx_C DNA replication factor CDT1; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=100.00  E-value=2.3e-39  Score=313.25  Aligned_cols=173  Identities=22%  Similarity=0.355  Sum_probs=155.0

Q ss_pred             CCchhHHhhhhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCCchhchhHHHHHHhhccccc
Q 006819           72 PPKDQIESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSL  151 (630)
Q Consensus        72 ~~~~~~~~~~r~~~~~ps~~~~~~~~~~~~L~LP~KYr~LaElFr~mDTvvsML~nRkE~~TF~Klk~~VE~MtrRrF~~  151 (630)
                      +.....++|+|+-++..+        +.++|.||+||+.|+++|++||||++||++|++++||.+||++||.|++|+|++
T Consensus         4 ~~~~~~pay~r~~~l~~~--------~~~~l~LP~ky~~L~~~F~~ld~v~~~l~~R~~~~tf~~lk~~Ve~~~~r~f~~   75 (197)
T 2zxx_C            4 PCVEKAPAYQRFHALAQP--------GLPGLVLPYKYQVLVEMFRSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEE   75 (197)
T ss_dssp             ----CCCHHHHTTGGGCC--------SSCSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHSSCCCH
T ss_pred             CCccCCchHHHHHHhccC--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHcCCCCH
Confidence            445667899999988875        566899999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhccccEEEEEEEe-ccCCCCCCCCCeeEEEeecccccCC--CCCccchhhHHHHHHHHHHHHHHHhCCCC--
Q 006819          152 GHLAQLKFILPEVIQIKKVLT-FDEKTSCMKPDLHVTVNADAIECDG--KSKCNSKNLNLRTVFRARLMDFLKDHPEG--  226 (630)
Q Consensus       152 ~HLAQIK~IyPeAy~~~qek~-~d~~S~~~k~d~qLtL~p~~~E~~~--~~~s~S~lLeRRrvF~~~Lld~vK~HHe~--  226 (630)
                      .||||||||||+||.|+|++. ++.++++++.+|||+|.|++.+..+  +.++++.+++||++||++|+++||.||+.  
T Consensus        76 ~~LaqI~~l~P~a~~~~~~~~~~~~~~~~~~~~yqL~i~p~~~~~~~~~~~~s~~~l~~R~~~Fr~~Ll~~Vk~~H~~fL  155 (197)
T 2zxx_C           76 RNVGQIKTVYPTSYRFRQECNVPTFKDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFL  155 (197)
T ss_dssp             HHHHHHHHHCGGGEEEEEEECCSSCCSCCCGGGEEEEEEECSSCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCeeEEEEEecccccCCccccccceEEEeecCccccccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999995 5669999999999999999887543  45678889999999999999999999998  


Q ss_pred             ------CCCCCCCCCC---CCCCCchhhhhhhhcccCCCCCCCCC
Q 006819          227 ------DEIPEETLPE---PFNRSRSDLQLNMVKKSTSLTPADSP  262 (630)
Q Consensus       227 ------~dIPEa~LPe---pFN~~~~~~~~~~~~~~~~~~~~~~~  262 (630)
                            +.||.+.|.+   .||.+.++          +|.||.||
T Consensus       156 ~~l~~~~~~~~~~l~rWHP~F~le~vp----------dI~~a~LP  190 (197)
T 2zxx_C          156 ASLNPPMAVPDDQLTRWHPRFNVDEVP----------DIEPAELP  190 (197)
T ss_dssp             TTSSSCCCCCGGGCCSCCTTCCGGGSC----------CCCCCCCC
T ss_pred             HhcCCCCcCchhhccccCCCCCcccCC----------CCCcccCC
Confidence                  5689999998   99988888          89999999

>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*

Probab=99.95  E-value=2e-28  Score=217.52  Aligned_cols=98  Identities=24%  Similarity=0.396  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHhhchhHHHHHHHHHHHhhccccccHHHHHHHHHhhccccCChhHHHHHHHHHHHhcccchhhcccCCCCe
Q 006819          530 ISQAKWRRQMIASLPKLFNMIHFLFQSIKRSVITKEELIHKIISSHLQITDRREVEEQMNLMLELVPEWISEKLSSCGDL  609 (630)
Q Consensus       530 ~~~~~~r~~~ia~LP~L~~iir~IF~S~krs~ITKEELvhKIias~~~I~d~gEvEEqL~LLeeLvPDWIS~k~i~sGD~  609 (630)
                      .++|++|.+++++||+|||+||+||+++||++||||++|+||+.||+.++++||||+||+||.+|+||||+.|.++ ++.
T Consensus         2 ~p~qeke~~~~srLPelArilR~vFvaEkK~vl~~e~~~~ki~~Syr~~ls~~EmE~hl~lL~ellPdWls~~~vR-~~~   80 (106)
T 3a4c_A            2 CPEQELRLQRLERLPELARVLRNVFVSERKPALTMEVVCARMVDSCQTALSPGEMEKHLVLLAELLPDWLSLHRIR-TDT   80 (106)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSEEEHHHHHHHHHHTSCCSCCHHHHHHHHHHHHHHCTTTEEEEEET-TEE
T ss_pred             CHHHHHHHHHHHhhHHHHHHHHHHHHhcccCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhCcchheeeeee-ccc
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999999 699


Q ss_pred             EEEeccCCChHHHHHHhhh
Q 006819          610 LVCINKMTCPESIRARLEE  628 (630)
Q Consensus       610 ~~ki~K~~dl~sVraRL~e  628 (630)
                      |+||+|..|++.|.+||+.
T Consensus        81 ylKl~k~~dl~~i~~rLe~   99 (106)
T 3a4c_A           81 YVKLDKAVDLAGLTARLAH   99 (106)
T ss_dssp             EEEECTTSCHHHHHHHHHH
T ss_pred             eeeeehhhhHHHHHHHHHH
Confidence            9999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	630
d1wlqc_	187	a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (	2e-25

>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA replication factor Cdt1
domain: DNA replication factor Cdt1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (253), Expect = 2e-25
 Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 93  SVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLG 152
           ++   G     LP KY  L E F S+D ++ +L  +  + TF  +   ++ +  +RF   
Sbjct: 10  ALAQPGLPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEER 69

Query: 153 HLAQLKFILPEVIQIKKVLTF-DEKTSCMKPDLHVTVNADAIECDG--KSKCNSKNLNLR 209
           ++ Q+K + P   + ++       K S  + D  +T+     +  G       +  L  R
Sbjct: 70  NVGQIKTVYPMSYRFRQECNVPTFKDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRR 129

Query: 210 TVFRARLMDFLKDH 223
            VFR  L++ +K+ 
Sbjct: 130 QVFRQNLVERVKEQ 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	630
d1wlqc_	187	DNA replication factor Cdt1 {Mouse (Mus musculus)	100.0

>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA replication factor Cdt1
domain: DNA replication factor Cdt1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-40  Score=318.85  Aligned_cols=167  Identities=22%  Similarity=0.353  Sum_probs=154.0

Q ss_pred             HhhhhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHhhHHHHHHHHHhcCCCCchhchhHHHHHHhhcccccchhhhh
Q 006819           78 ESAGKQISASPSVKSSVNPAGSGSPKLPAKYMQLAECFDSLDAVIRLLKLKCSSPTFTSICPKIECLTDRRFSLGHLAQL  157 (630)
Q Consensus        78 ~~~~r~~~~~ps~~~~~~~~~~~~L~LP~KYr~LaElFr~mDTvvsML~nRkE~~TF~Klk~~VE~MtrRrF~~~HLAQI  157 (630)
                      ++++|+.++..+        +.+++.||+||+.|+++|++||||++||++|++++||+|||++||+|+||+|++.|||||
T Consensus         3 pa~~r~~~l~~~--------~~~~l~LP~ky~~L~~~f~~ldtv~~~l~~R~~~~tf~~lk~~Ve~~~~r~ft~~~LaQI   74 (187)
T d1wlqc_           3 PAYQRFHALAQP--------GLPGLVLPYKYQVLVEMFHSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQI   74 (187)
T ss_dssp             CHHHHTHHHHCC--------SSSSCCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             cHHHHHHHhhcc--------CCCCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHhCcccHHHHHHH
Confidence            578899888875        778999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccEEEEEEEe-ccCCCCCCCCCeeEEEeecccccCC--CCCccchhhHHHHHHHHHHHHHHHhCCCC--------
Q 006819          158 KFILPEVIQIKKVLT-FDEKTSCMKPDLHVTVNADAIECDG--KSKCNSKNLNLRTVFRARLMDFLKDHPEG--------  226 (630)
Q Consensus       158 K~IyPeAy~~~qek~-~d~~S~~~k~d~qLtL~p~~~E~~~--~~~s~S~lLeRRrvF~~~Lld~vK~HHe~--------  226 (630)
                      |||||++|.|+|++. ++.+++|++.+|||+|.|+++++.+  ..++++.+++||++||++|+++|++||+.        
T Consensus        75 ~~i~P~~~~~k~~~~~~~~~~~~~~~~~ql~i~p~~~~~~~~~~~l~~s~~~~Rr~~Fr~~Ll~~Vk~~H~~fL~sl~~~  154 (187)
T d1wlqc_          75 KTVYPMSYRFRQECNVPTFKDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPP  154 (187)
T ss_dssp             HHHCTTSEEEEEEECCSSCCSCCCGGGEEEEEEECSSCC--CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred             HHhCccceEEEeeeccccccccccccceeEEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999995 5669999999999999999988654  46678899999999999999999999997        


Q ss_pred             CCCCCCCCCC---CCCCCchhhhhhhhcccCCCCCCCCC
Q 006819          227 DEIPEETLPE---PFNRSRSDLQLNMVKKSTSLTPADSP  262 (630)
Q Consensus       227 ~dIPEa~LPe---pFN~~~~~~~~~~~~~~~~~~~~~~~  262 (630)
                      +.||.+.|.+   .||...++          +|+|+.+|
T Consensus       155 ~~~~~~~l~rWHP~F~le~vp----------~I~~~~LP  183 (187)
T d1wlqc_         155 MAVPDDQLTRWHPRFNVDEVP----------DIEPAELP  183 (187)
T ss_dssp             CCCCTTTCCSCCTTCCGGGSC----------CCCCCCCC
T ss_pred             ccCchhhcCccCCCCCcccCC----------CCChhhcC
Confidence            6679999999   99988888          89999999