Citrus Sinensis ID: 006822

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGLTFQVLLA
cccccHHHHHHccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccEccccccccccccccccEEEEcccccccHHHHHHHHHHEEEEEEcEHHHHHHHHHHHHHHHHHHHHcccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccHHHHHHccHccHHHHHHccHHHHHHHHHHHHcccEEEEEcc
mgmneqavddtcignpepdkgylhevtlssgidmqekqidctMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIhgnndealefsangqlsningkskmknADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkvGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssatmynagdtddkellinptnnlagatvktSEDAVSLMKSVQAGLTFQVLLA
mgmneqavddtcignpepdKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEivnvhhkissckHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLestknsevltmkEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesveeqcivlsednfelknkqsfMRDKIKILESslnraniekaasakevnhRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssaTMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKsvqagltfqvlla
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKlvnlhvllmyllARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGLTFQVLLA
*********************YLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKM**************************KFQRVLSYFIHGNND**********************************************************LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS*************FI**********************************************************************************************************************************************LYSAIWDMETLIE*******************CIVLS*******************************************LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL***********************************************VQAGLTFQV***
******A******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QVLLA
*********DTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHD*****************QSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL****************LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL**************SMLYSAIWDMETLIEDLK**************EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGLTFQVLLA
*****QAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALE*****QLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSAT*YNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGLTFQVLLA
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MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIxxxxxxxxxxxxxxxxxxxxxVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxFQTSQEQLNEMDNFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINFLKGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSMLYSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGLTFQVLLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query630 2.2.26 [Sep-21-2011]
A8MQR0627 WPP domain-interacting ta yes no 0.841 0.845 0.535 1e-144
Q8L7E5703 WPP domain-interacting ta no no 0.906 0.812 0.386 1e-95
>sp|A8MQR0|WIT2_ARATH WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/560 (53%), Positives = 404/560 (72%), Gaps = 30/560 (5%)

Query: 43  MTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLF 102
           + +LT++++D AY+SEKL+NLHVLLM+LLA  +DLE   M   D +  S EKAL +DLL 
Sbjct: 24  LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query: 103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
           GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct: 82  GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query: 163 HVSELKMQSAKFQRVLSYFIHGN--NDEALEFSANGQLSNINGKSKMKNAD-QQRHILRM 219
            VSE+ +Q A+ +R L Y  +G   N+E++E         +  K  +K +D + ++ LRM
Sbjct: 137 QVSEITLQLAQLRRTLHYIRNGTSENEESVE---------LRQKYALKPSDLRHKNALRM 187

Query: 220 LEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVL 279
           LEKSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL
Sbjct: 188 LEKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVL 247

Query: 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN------ 333
            GISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T +      
Sbjct: 248 TGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIV 307

Query: 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393
           SEVLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAE
Sbjct: 308 SEVLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAE 367

Query: 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453
           S E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QE
Sbjct: 368 SGEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQE 427

Query: 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513
           QQ+MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K 
Sbjct: 428 QQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKS 487

Query: 514 LESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573
           LE+ L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YSL  ENK+L      
Sbjct: 488 LEAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL-----R 542

Query: 574 SGKSSSATMYNAGDTDDKEL 593
             + S+    N     DKEL
Sbjct: 543 VNQCSNTYQRNGSYAGDKEL 562
Together with WIT1, required for the nuclear envelope docking of RANGAP proteins in root tips.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7E5|WIT1_ARATH WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
255547013601 conserved hypothetical protein [Ricinus 0.941 0.986 0.599 0.0
297738216 735 unnamed protein product [Vitis vinifera] 0.936 0.802 0.579 0.0
147817708 745 hypothetical protein VITISV_040555 [Viti 0.928 0.785 0.552 1e-176
359473487629 PREDICTED: WPP domain-interacting tail-a 0.846 0.847 0.589 1e-172
224111830502 predicted protein [Populus trichocarpa] 0.785 0.986 0.625 1e-162
449463561589 PREDICTED: WPP domain-interacting tail-a 0.885 0.947 0.547 1e-158
356502676607 PREDICTED: WPP domain-interacting tail-a 0.868 0.901 0.531 1e-154
356498101607 PREDICTED: WPP domain-interacting tail-a 0.906 0.940 0.515 1e-148
145327191582 WPP domain-interacting tail-anchored pro 0.841 0.910 0.535 1e-142
30697764627 WPP domain-interacting tail-anchored pro 0.841 0.845 0.535 1e-142
>gi|255547013|ref|XP_002514564.1| conserved hypothetical protein [Ricinus communis] gi|223546168|gb|EEF47670.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/612 (59%), Positives = 456/612 (74%), Gaps = 19/612 (3%)

Query: 3   MNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVN 62
           M+  ++   C  N E  KGY+ +  LS G   Q+  I+ TM VLTR DLDL +SSEKLVN
Sbjct: 1   MDGYSIAQACTINAESGKGYVDDGNLSGGRGTQD--IESTMEVLTRADLDLGFSSEKLVN 58

Query: 63  LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVE 122
           LH LLM+LLA  ++LE +  E S ++ATS+E+AL +DLL GILDSELR VE   D I  E
Sbjct: 59  LHGLLMHLLAWDNNLEVMA-EYSYISATSVERALEFDLLSGILDSELRVVENFTDNIQAE 117

Query: 123 IVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182
           IV+  HKISSC+H  ++  I+EK   KL D E SLK++QE   E KMQ+ K QR  S F 
Sbjct: 118 IVDARHKISSCRHSAKLVAIIEK---KLRDSEESLKKTQERFIEAKMQTVKLQRFFSAFK 174

Query: 183 HGN--NDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQN 240
             N  +D + E SANGQL NI   SK   A+Q+RHILRMLEK LARELDLEK +SEL +N
Sbjct: 175 LENWKDDNSTELSANGQLPNIKTNSKRHTAEQKRHILRMLEKCLARELDLEKNLSELRRN 234

Query: 241 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300
           EEQLKLKLH+TEQVA  MEEAAEVVWGRFLEAEN+AEVLMGISKEM GR QI QFNLNGS
Sbjct: 235 EEQLKLKLHYTEQVALHMEEAAEVVWGRFLEAENAAEVLMGISKEMAGRLQIFQFNLNGS 294

Query: 301 LQRESELKSKLGDFIEQLKAKDMVLQKLES------TKNSEVLTMKEKVKSLEEQLKESE 354
            QRE+ELKS+L   +EQL AKD  L+KLE        K+S+V ++ EKV SLEEQLK SE
Sbjct: 295 FQREAELKSQLHSCLEQLDAKDAALKKLEGKIGEHIAKSSQVPSLMEKVNSLEEQLKRSE 354

Query: 355 IRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414
           +RL++AN   + SQEQ++EM + +E +KES+Y AESRAE+AE KVTQLTDTN ELS+EI+
Sbjct: 355 LRLKHANDFIEESQEQVSEMVSIVEKMKESIYEAESRAETAEAKVTQLTDTNSELSDEIS 414

Query: 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 474
           FLK + +SNTKKV +LE Q+R+LEIQ+Q +K SSEASQEQQ+MLY+AIWDMETLIEDLKS
Sbjct: 415 FLKSSAESNTKKVSLLEKQVRELEIQVQHSKASSEASQEQQNMLYAAIWDMETLIEDLKS 474

Query: 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534
           KVSKAESKTE+VE+QCI+LSE N EL  + +F+R K++ LE+SL+RAN  KA SAKE+N 
Sbjct: 475 KVSKAESKTETVEDQCILLSETNMELDKELNFLRSKVEGLEASLDRANNSKATSAKEINL 534

Query: 535 RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELL 594
            T L+ + VMQL+ +R+ IQ Q++SL  ENKLLVEKL    + +S T +  GD D+K++L
Sbjct: 535 TTTLIKDTVMQLSRERDYIQNQLFSLMKENKLLVEKL----RDASITGFKHGDNDNKKVL 590

Query: 595 INPTNNLAGATV 606
            +  N L+  T 
Sbjct: 591 FSE-NGLSNQTC 601

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738216|emb|CBI27417.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147817708|emb|CAN75587.1| hypothetical protein VITISV_040555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473487|ref|XP_002267767.2| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111830|ref|XP_002315993.1| predicted protein [Populus trichocarpa] gi|222865033|gb|EEF02164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463561|ref|XP_004149502.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] gi|449481214|ref|XP_004156116.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502676|ref|XP_003520143.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356498101|ref|XP_003517892.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|145327191|ref|NP_001077797.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|334183748|ref|NP_001185353.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196738|gb|AEE34859.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196739|gb|AEE34860.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30697764|ref|NP_177057.2| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|205830832|sp|A8MQR0.1|WIT2_ARATH RecName: Full=WPP domain-interacting tail-anchored protein 2 gi|332196737|gb|AEE34858.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
TAIR|locus:2205470627 WIT2 "AT1G68910" [Arabidopsis 0.844 0.848 0.517 1.8e-133
TAIR|locus:2148057703 WIT1 "AT5G11390" [Arabidopsis 0.871 0.780 0.330 7.1e-61
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.826 0.349 0.198 1.9e-18
UNIPROTKB|F1N8D3 848 Gga.11048 "Uncharacterized pro 0.742 0.551 0.223 9.3e-16
UNIPROTKB|O15083 957 ERC2 "ERC protein 2" [Homo sap 0.766 0.504 0.219 8.3e-15
UNIPROTKB|F1NZF51940 Gga.27138 "Uncharacterized pro 0.707 0.229 0.246 9.9e-15
MGI|MGI:1098749 957 Erc2 "ELKS/RAB6-interacting/CA 0.766 0.504 0.217 1.1e-14
SGD|S000004300 911 IMH1 "Protein involved in vesi 0.765 0.529 0.207 1.3e-14
UNIPROTKB|P025651940 MYH3 "Myosin-3" [Gallus gallus 0.707 0.229 0.246 1.6e-14
DICTYBASE|DDB_G0286985 1024 zipA "zipper-like domain-conta 0.738 0.454 0.214 1.9e-14
TAIR|locus:2205470 WIT2 "AT1G68910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 289/558 (51%), Positives = 393/558 (70%)

Query:    43 MTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVMENSDVAATSIEKALVYDLLF 102
             + +LT++++D AY+SEK            A  +DLE   M   D +  S EKAL +DLL 
Sbjct:    24 LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query:   103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
             GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct:    82 GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query:   163 HVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNAD-QQRHILRMLE 221
              VSE+ +Q A+ +R L Y  +G ++       N +   +  K  +K +D + ++ LRMLE
Sbjct:   137 QVSEITLQLAQLRRTLHYIRNGTSE-------NEESVELRQKYALKPSDLRHKNALRMLE 189

Query:   222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG 281
             KSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL G
Sbjct:   190 KSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVLTG 249

Query:   282 ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--KNSE---- 335
             ISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T  +NSE    
Sbjct:   250 ISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIVSE 309

Query:   336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395
             VLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAES 
Sbjct:   310 VLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAESG 369

Query:   396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455
             E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QEQQ
Sbjct:   370 EAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQEQQ 429

Query:   456 SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515
             +MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K LE
Sbjct:   430 NMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKSLE 489

Query:   516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575
             + L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YSL  ENK+L  ++    
Sbjct:   490 AMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL--RVN--- 544

Query:   576 KSSSATMYNAGDTDDKEL 593
             + S+    N     DKEL
Sbjct:   545 QCSNTYQRNGSYAGDKEL 562
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2148057 WIT1 "AT5G11390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8D3 Gga.11048 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O15083 ERC2 "ERC protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZF5 Gga.27138 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1098749 Erc2 "ELKS/RAB6-interacting/CAST family member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
SGD|S000004300 IMH1 "Protein involved in vesicular transport" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|P02565 MYH3 "Myosin-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8MQR0WIT2_ARATHNo assigned EC number0.53570.84120.8452yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021167001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (659 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-05
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 4e-05
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 6e-05
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 9e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.003
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.003
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.004
pfam07888 546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 62.8 bits (153), Expect = 4e-10
 Identities = 72/359 (20%), Positives = 165/359 (45%), Gaps = 32/359 (8%)

Query: 223  SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282
            SLA++ +L++   EL + E QL+      + +   +              E+  E L   
Sbjct: 662  SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSL-----------EDLLEELRRQ 710

Query: 283  SKEMLGRFQIVQFNLNGSLQRESELKSKLGDF---IEQLKAKDMVLQKLESTKNSEVLTM 339
             +E+  + + ++  L    +   +L+S+L +    +E+L+ +   LQ+       E+ ++
Sbjct: 711  LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 340  KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399
            +E +  L+E+++E E + Q      +  +E+L E +  +++L+  L   E R E  E+++
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 400  TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLY 459
             +L +   EL E+++ L+   +   K++  L+ +L +LE + ++ +   +  +E++  L 
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 460  SAIWDMETLIEDLKSKVSKAESKTESVEEQC----IVLSEDNFELKNKQSFM-----RDK 510
              + ++E+ + +LK ++ K   + E +E +     + L E   EL+ +           +
Sbjct: 891  EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Query: 511  IKILESSL------NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563
            I+ LE  +      N   IE+    +EV  R + +      L   +E + + +  L  E
Sbjct: 951  IERLEEEIEALGPVNLRAIEE---YEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 630
KOG1003205 consensus Actin filament-coating protein tropomyos 100.0
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 99.96
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 99.19
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 99.18
PRK02224 880 chromosome segregation protein; Provisional 99.02
PRK02224880 chromosome segregation protein; Provisional 98.99
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.75
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.7
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.7
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.63
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.62
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.62
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.36
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.33
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.33
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.29
KOG0971 1243 consensus Microtubule-associated protein dynactin 98.24
PRK03918 880 chromosome segregation protein; Provisional 98.15
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 98.08
PRK04863 1486 mukB cell division protein MukB; Provisional 98.03
PHA02562562 46 endonuclease subunit; Provisional 98.02
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 97.88
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.87
PF05701522 WEMBL: Weak chloroplast movement under blue light; 97.87
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.86
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 97.82
KOG1003205 consensus Actin filament-coating protein tropomyos 97.8
PRK03918 880 chromosome segregation protein; Provisional 97.79
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 97.71
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 97.6
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.58
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.51
PRK01156 895 chromosome segregation protein; Provisional 97.46
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.42
PRK11637428 AmiB activator; Provisional 97.39
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 97.34
PRK04778569 septation ring formation regulator EzrA; Provision 97.25
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.19
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.13
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.03
PRK04863 1486 mukB cell division protein MukB; Provisional 97.03
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.98
PF00038312 Filament: Intermediate filament protein; InterPro: 96.84
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.83
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.82
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.79
PRK01156895 chromosome segregation protein; Provisional 96.69
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.6
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 96.55
PRK11637 428 AmiB activator; Provisional 96.48
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.37
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.36
PHA02562562 46 endonuclease subunit; Provisional 96.35
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.35
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 96.27
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.09
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 95.97
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 95.82
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 95.71
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 95.64
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.56
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 95.53
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.5
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 95.36
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 95.19
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 94.68
PF12777344 MT: Microtubule-binding stalk of dynein motor; Int 94.41
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 94.33
PRK04778569 septation ring formation regulator EzrA; Provision 94.28
PF05483 786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 94.19
PF00038312 Filament: Intermediate filament protein; InterPro: 94.08
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 94.07
PF14662193 CCDC155: Coiled-coil region of CCDC155 94.04
PF05911769 DUF869: Plant protein of unknown function (DUF869) 94.0
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 93.94
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 93.8
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 93.69
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 93.69
PF05010207 TACC: Transforming acidic coiled-coil-containing p 93.49
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 93.38
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.23
PRK09039343 hypothetical protein; Validated 93.22
KOG0963 629 consensus Transcription factor/CCAAT displacement 93.16
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 93.09
PRK09039343 hypothetical protein; Validated 93.07
PRK11281 1113 hypothetical protein; Provisional 93.07
PLN02939 977 transferase, transferring glycosyl groups 92.91
KOG0018 1141 consensus Structural maintenance of chromosome pro 92.76
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 92.45
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 91.88
PRK10929 1109 putative mechanosensitive channel protein; Provisi 91.85
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 91.67
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 91.59
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 91.17
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 91.16
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 91.13
KOG0018 1141 consensus Structural maintenance of chromosome pro 90.42
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.22
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 90.21
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 90.1
PF05911769 DUF869: Plant protein of unknown function (DUF869) 89.93
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 89.78
PF14662193 CCDC155: Coiled-coil region of CCDC155 89.54
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 89.43
PLN031881320 kinesin-12 family protein; Provisional 89.41
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 88.91
PF13851201 GAS: Growth-arrest specific micro-tubule binding 88.58
KOG0963 629 consensus Transcription factor/CCAAT displacement 88.44
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 87.92
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 87.9
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 87.83
COG5185622 HEC1 Protein involved in chromosome segregation, i 87.81
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.45
TIGR02977219 phageshock_pspA phage shock protein A. Members of 87.14
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 86.58
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 86.43
PF15397258 DUF4618: Domain of unknown function (DUF4618) 86.39
KOG4593 716 consensus Mitotic checkpoint protein MAD1 [Cell cy 85.93
KOG0249 916 consensus LAR-interacting protein and related prot 85.41
PRK10869553 recombination and repair protein; Provisional 85.03
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 84.93
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 84.61
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 83.92
KOG0979 1072 consensus Structural maintenance of chromosome pro 83.62
COG3883265 Uncharacterized protein conserved in bacteria [Fun 83.47
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 82.65
PLN02939 977 transferase, transferring glycosyl groups 81.85
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 81.72
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 81.72
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 80.26
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=7.7e-34  Score=275.45  Aligned_cols=188  Identities=18%  Similarity=0.260  Sum_probs=184.6

Q ss_pred             hHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHh
Q 006822          367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV  446 (630)
Q Consensus       367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a  446 (630)
                      ++++|++++|+|++|++++++|++|+.+|.+|+.+++++|+|.+|++|+|++|+..+++||+.+|.||++++       +
T Consensus         2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk-------~   74 (205)
T KOG1003|consen    2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK-------H   74 (205)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------H
Confidence            467899999999999999999999999999999999999999999999999999999999999999999998       9


Q ss_pred             hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 006822          447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA  526 (630)
Q Consensus       447 saEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke  526 (630)
                      +++++++    ||++|+|+++|||   ++|++++.|||.+|++|.       +|.++++++++++++|+++.++++++.+
T Consensus        75 iaE~adr----K~eEVarkL~iiE---~dLE~~eeraE~~Es~~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d  140 (205)
T KOG1003|consen   75 IAEKADR----KYEEVARKLVIIE---GELERAEERAEAAESQSE-------ELEEDLRILDSNLKSLSAKEEKLEQKEE  140 (205)
T ss_pred             HHHHHHH----HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence            9999999    9999999999999   999999999999999999       9999999999999999999999999999


Q ss_pred             hh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 006822          527 AS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG  575 (630)
Q Consensus       527 ~t----------lKeae~Rak~aE~lV~KL~~ErdrLedQl~s~keenK~L~ekld~tk  575 (630)
                      .|          +|++++|++|++|.|++|+++||+|++.+...+.+|+.+...||+|=
T Consensus       141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~  199 (205)
T KOG1003|consen  141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL  199 (205)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99          99999999999999999999999999999999999999999999873

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF15397 DUF4618: Domain of unknown function (DUF4618) Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 55/307 (17%), Positives = 125/307 (40%), Gaps = 10/307 (3%)

Query: 284  KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343
             E L R +  Q      L+   +  ++L +    L+ K     +L +      + +  K 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 344  KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403
            + LEE L E E R++      Q  Q +  +M   +  L+E L   E+  +  + +     
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 404  DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW 463
                ++ ++I  ++  N+  TK+  +LE ++ DL   L + +  ++   + ++   S I 
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042

Query: 464  DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523
            ++E  ++  +    + E     +E +   L E   EL+ + + ++ ++   E  L  A  
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 524  EKAASAKEVNHRTKLMMEMVMQLA----------TQRELIQKQVYSLTSENKLLVEKLQY 573
                   + N+  K + E+   ++            R   +KQ   L+ E + L  +L+ 
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162

Query: 574  SGKSSSA 580
            +  +++ 
Sbjct: 1163 TLDTTAT 1169
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 99.91
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 99.86
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.87
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.7
2z5i_A52 TM, general control protein GCN4 and tropomyosin a 98.56
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 98.35
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.34
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 98.25
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.22
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 98.08
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 98.01
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 97.59
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 97.43
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 97.26
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 96.96
3mud_A175 DNA repair protein XRCC4, tropomyosin alpha-1 CHA; 96.71
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.56
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 96.09
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.9
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.73
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.69
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 95.32
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 93.17
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.65
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 91.69
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 91.55
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 91.43
3mtu_E77 Head morphogenesis protein, tropomyosin alpha-1 C; 90.88
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.92
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 88.43
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.02
3bas_A89 Myosin heavy chain, striated muscle/general contro 80.44
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
Probab=99.91  E-value=4.9e-25  Score=205.38  Aligned_cols=138  Identities=22%  Similarity=0.321  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhHhhhHhHHH
Q 006822          374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE  453 (630)
Q Consensus       374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e  453 (630)
                      |+|+|++|++++.+|++|+.+|..||..++++++++.|.+++|++|+..+++|++.||.||++++       .+|+++++
T Consensus         1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadr   73 (147)
T 2b9c_A            1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADR   73 (147)
T ss_dssp             ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999998       99999999


Q ss_pred             HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH
Q 006822          454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV  532 (630)
Q Consensus       454 qQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsKc~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ke~tlKea  532 (630)
                          +|++++|+++|++   ++|.||+.|++.+|+||.       +|+++|+.++++|||||++..+|+++++.|-..|
T Consensus        74 ----KyeE~~RKl~~~E---~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I  138 (147)
T 2b9c_A           74 ----KYEEVARKLVIIE---SDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV  138 (147)
T ss_dssp             ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence                9999999999999   999999999999999999       9999999999999999999999999999996554
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00