Citrus Sinensis ID: 006834
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 629 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C884 | 639 | Probable methyltransferas | yes | no | 0.990 | 0.974 | 0.707 | 0.0 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.980 | 0.974 | 0.693 | 0.0 | |
| O80844 | 631 | Probable methyltransferas | no | no | 0.952 | 0.949 | 0.581 | 0.0 | |
| Q9ZPH9 | 633 | Probable methyltransferas | no | no | 0.957 | 0.951 | 0.553 | 0.0 | |
| B9DFI7 | 616 | Probable methyltransferas | no | no | 0.955 | 0.975 | 0.550 | 0.0 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.926 | 0.938 | 0.564 | 0.0 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.818 | 0.842 | 0.538 | 1e-174 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.829 | 0.865 | 0.469 | 1e-147 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.868 | 0.91 | 0.447 | 1e-144 | |
| Q93W95 | 600 | Probable methyltransferas | no | no | 0.780 | 0.818 | 0.452 | 1e-130 |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/643 (70%), Positives = 521/643 (81%), Gaps = 20/643 (3%)
Query: 1 MAKEYSGSPKPHQL-ESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSC 59
MAKE S H L E+KRKRLTW+L VSGLCIL YVLG+WQT T P + SE Y+ R+ C
Sbjct: 1 MAKENSS----HSLAEAKRKRLTWILCVSGLCILSYVLGSWQTNTVPTSSSEAYS-RMGC 55
Query: 60 N----INAPQAGDGELNPSSLSSS--------AALDFESHHQIEINST-VSLHEFPPCDM 106
+ Q + NPSS +S LDFESHH++E+ T ++ F PCDM
Sbjct: 56 DETSTTTRAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKLELKITNQTVKYFEPCDM 115
Query: 107 SYSDITPCQDPVRSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAW 166
S S+ TPC+D R R+FDR M KYRERHCP +ELL CLIP PP YK PFKWPQSRDYAW
Sbjct: 116 SLSEYTPCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAW 175
Query: 167 YDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTA 226
YDNIPHKELSIEKA QNWIQVEG RFRFPGGGT FP GADAYID+I LIPLT G IRTA
Sbjct: 176 YDNIPHKELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTA 235
Query: 227 VDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARA 286
+DTGCGVAS+GAYLLKRDI+ MSFA RDTHEAQVQFALERGVPA+IG++ S+RLPYPARA
Sbjct: 236 IDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARA 295
Query: 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQE 346
FD+AHCS CLIPW+ DGLYL EVDRVLRPGGYWILSGPPI+WKKYW+GWER++EDLKQE
Sbjct: 296 FDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQE 355
Query: 347 QDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICG-PDNPDTAWYKD 405
QD+IED A+ LCWKK+ EK DL+IWQKPINH++CNK K V+KTP +C D PD AWYKD
Sbjct: 356 QDSIEDAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKD 415
Query: 406 MEACITPLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRM 465
+E+C+TPLPE +SSDE AGGALE WP RAF+VPPRI G++ I AEK REDNE+WK+R+
Sbjct: 416 LESCVTPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERI 475
Query: 466 TYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL 525
+YYK+I +GR+RN+MDMNAYLGGFAAAM KYP WVMNVVP + TLG I+ERG
Sbjct: 476 SYYKQIMPELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGF 535
Query: 526 IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE 585
IGTYQDWCE FSTYPRTYDLIHA G+FSIY++RCD+T ILLEMDRILRPEGTV+FRDTVE
Sbjct: 536 IGTYQDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVE 595
Query: 586 MLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKTYWTGAS 628
ML KI+SIT GMRWKS+I+DHE GPFNPEKIL A K+YWTG S
Sbjct: 596 MLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/627 (69%), Positives = 508/627 (81%), Gaps = 10/627 (1%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCN 60
MAKE SG HQ E++RK+LT +LGVSGLCILFYVLGAWQ T P + S ++ C
Sbjct: 1 MAKENSGHH--HQTEARRKKLTLILGVSGLCILFYVLGAWQANTVPSSIS-----KLGCE 53
Query: 61 INAPQAGDGELNPSSLSSSAALDFESHHQIEINST-VSLHEFPPCDMSYSDITPCQDPVR 119
+ + SS S SA LDF+SH+QIE+ T ++ F PC++S S+ TPC+D R
Sbjct: 54 TQSNPSSSSSS--SSSSESAELDFKSHNQIELKETNQTIKYFEPCELSLSEYTPCEDRQR 111
Query: 120 SRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEK 179
R+FDR M KYRERHCP +ELL CLIP PP YK PFKWPQSRDYAWYDNIPHKELS+EK
Sbjct: 112 GRRFDRNMMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEK 171
Query: 180 AGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAY 239
A QNWIQVEG RFRFPGGGT FP GADAYID+I LIPLT G IRTA+DTGCGVAS+GAY
Sbjct: 172 AVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAY 231
Query: 240 LLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299
LLKRDI+ +SFA RDTHEAQVQFALERGVPA+IG++ S+RLPYPARAFD+AHCS CLIPW
Sbjct: 232 LLKRDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 291
Query: 300 YMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCW 359
+ DGLYL+EVDRVLRPGGYWILSGPPI+WK+YWRGWERT+EDLK+EQD+IED+AK LCW
Sbjct: 292 FKNDGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCW 351
Query: 360 KKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSS 419
KK+ EK DL+IWQKP+NHI+C K K K+P IC DN D+AWYKD+E CITPLPE ++
Sbjct: 352 KKVTEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNP 411
Query: 420 DEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGR 479
D+ AGGALE WP+RAF+VPPRI G++ + AEK REDNE+WK+R+ +YKKI GR
Sbjct: 412 DDSAGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGR 471
Query: 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTY 539
+RN+MDMNA+LGGFAA+M KYP WVMNVVP + TLG IYERGLIGTYQDWCE FSTY
Sbjct: 472 FRNIMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTY 531
Query: 540 PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRW 599
PRTYD+IHA G+FS+Y+ RCD+T ILLEMDRILRPEGTV+ RD VE L K+ I +GM+W
Sbjct: 532 PRTYDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKW 591
Query: 600 KSQIMDHESGPFNPEKILFAAKTYWTG 626
KSQI+DHE GPFNPEKIL A KTYWTG
Sbjct: 592 KSQIVDHEKGPFNPEKILVAVKTYWTG 618
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/617 (58%), Positives = 456/617 (73%), Gaps = 18/617 (2%)
Query: 16 SKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCNINAPQAGDGELNPSS 75
+K+ L +V V+ LCI Y+LG WQ T R + + + +G P+S
Sbjct: 11 TKKANLYYVTLVALLCIASYLLGIWQNTAV--------NPRAAFDDSDGTPCEGFTRPNS 62
Query: 76 LSSSAALDFESHHQIEINSTVS--LHEFPPCDMSYSDITPCQDPVRSRKFDREMAKYRER 133
+ LDF++HH I+ V+ FP C + S+ TPC+D RS KF RE +YR+R
Sbjct: 63 ---TKDLDFDAHHNIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQR 119
Query: 134 HCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFR 193
HCP+ EE+L+C IPAP YKTPF+WP SRD AW+ N+PH EL++EK QNW++ E RF
Sbjct: 120 HCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFW 179
Query: 194 FPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARR 253
FPGGGT FP GADAYID+I LI L+ G+IRTA+DTGCGVAS+GAYLL R+I TMSFA R
Sbjct: 180 FPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPR 239
Query: 254 DTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRV 313
DTHEAQVQFALERGVPAMIG++++ RLPYP+RAFD+AHCS CLIPW DG YL+EVDRV
Sbjct: 240 DTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRV 299
Query: 314 LRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQK 373
LRPGGYWILSGPPI+W+K W+GWERT +DL EQ IE +A+ LCWKK+++++DLAIWQK
Sbjct: 300 LRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQK 359
Query: 374 PINHIDCNKSKVVYKTPQICGPD-NPDTAWYKDMEACITPLPEVSSSDE---VAGGALEK 429
P NHIDC K++ V K P+ C D +PD AWY M++C+TPLPEV +++ VAGG +EK
Sbjct: 360 PFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEK 419
Query: 430 WPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKID-GLFHKGRYRNVMDMNA 488
WP R ++PPR++ G+L IT E E+ +LWK R++YYKK+D L GRYRN++DMNA
Sbjct: 420 WPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNA 479
Query: 489 YLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHA 548
YLGGFAAA++ PVWVMNVVP + +TLG IYERGLIGTYQ+WCEA STYPRTYD IHA
Sbjct: 480 YLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHA 539
Query: 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHES 608
VF++YQ +C+ ILLEMDRILRP G VI RD V++L+K++ +T+G+ W+ +I DHE
Sbjct: 540 DSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHEK 599
Query: 609 GPFNPEKILFAAKTYWT 625
GP EKI +A K YWT
Sbjct: 600 GPHEREKIYYAVKQYWT 616
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/625 (55%), Positives = 452/625 (72%), Gaps = 23/625 (3%)
Query: 14 LESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYT---TRVSCNINAPQAGDGE 70
L +K+ L V+ ++ LC+ FY +G WQ + I++S + T V C
Sbjct: 15 LRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELTSVPCTFPH------- 67
Query: 71 LNPSSLSSSAALDFESHHQI-EINSTVS---LHEFPPCDMSYSDITPCQDPVRSRKFDRE 126
++ L+F S H ++ T++ + + P C + +S+ TPC+ RS F RE
Sbjct: 68 ------QTTPILNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRE 121
Query: 127 MAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQ 186
YRERHCP+ E++RC IPAP Y PF+WP+SRD AW+ N+PH EL++EK QNW++
Sbjct: 122 RLIYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVR 181
Query: 187 VEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL 246
E RF FPGGGT FP GADAYID I LI L G+IRTA+DTGCGVAS+GAYL+ R+I+
Sbjct: 182 YEKDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIV 241
Query: 247 TMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLY 306
TMSFA RDTHEAQVQFALERGVPA+IGV++S RLP+PARAFD+AHCS CLIPW Y+G Y
Sbjct: 242 TMSFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTY 301
Query: 307 LLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKN 366
L+EVDRVLRPGGYWILSGPPI+W+++W+GWERT++DL EQ IE +A+ LCW+KL+++
Sbjct: 302 LIEVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKLVQRE 361
Query: 367 DLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSD--EVAG 424
DLA+WQKP NH+ C ++++ P C P+ WY +E C+TPLPEV+ S+ EVAG
Sbjct: 362 DLAVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIKEVAG 421
Query: 425 GALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKID-GLFHKGRYRNV 483
G L +WPER ++PPRI SGSL GIT ++ + E W+ R++YYKK D L GRYRN
Sbjct: 422 GQLARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGRYRNF 481
Query: 484 MDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTY 543
+DMNA+LGGFA+A+ PVWVMNVVP ++ +TLG IYERGLIGTYQ+WCEA STYPRTY
Sbjct: 482 LDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTYPRTY 541
Query: 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQI 603
D IHA VFS+Y+DRCD+ +ILLEMDRILRP+G+VI RD +++L K++ IT+ M+W+ +I
Sbjct: 542 DFIHADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQWEGRI 601
Query: 604 MDHESGPFNPEKILFAAKTYWTGAS 628
DHE+GP EKILF K YWT +
Sbjct: 602 GDHENGPLEREKILFLVKEYWTAPA 626
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/627 (55%), Positives = 426/627 (67%), Gaps = 26/627 (4%)
Query: 10 KPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQS---EVYTTRVSCNINAPQA 66
K + K + + V LC FY+LGAWQ + S E+ + CNI
Sbjct: 4 KSSSADGKTRSSVQIFIVFSLCCFFYILGAWQRSGFGKGDSIALEMTNSGADCNI----- 58
Query: 67 GDGELNPSSLSSSAALDFESHHQIE-----INSTVSLHEFPPCDMSYSDITPCQDPVRSR 121
+L+FE+HH E + + F PCD Y+D TPCQD R+
Sbjct: 59 ------------VPSLNFETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAM 106
Query: 122 KFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAG 181
F R+ YRERHC E L CLIPAP Y TPF WP+SRDY Y N P+K L++EKA
Sbjct: 107 TFPRDSMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAI 166
Query: 182 QNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLL 241
QNWIQ EG FRFPGGGT FP GAD YID + +IP+ G +RTA+DTGCGVASWGAYL
Sbjct: 167 QNWIQYEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLW 226
Query: 242 KRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301
R++ MSFA RD+HEAQVQFALERGVPA+IGV+ + +LPYP RAFDMAHCS CLIPW
Sbjct: 227 SRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGA 286
Query: 302 YDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKK 361
DG+YL+EVDRVLRPGGYWILSGPPI+WK ++ W+R KEDL++EQ IE+ AK LCW+K
Sbjct: 287 NDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEK 346
Query: 362 LIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDE 421
E ++AIWQK +N C +S+ C D+ D WYK MEACITP PE SSSDE
Sbjct: 347 KYEHGEIAIWQKRVNDEAC-RSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSDE 405
Query: 422 VAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYR 481
VAGG L+ +P+R +VPPRISSGS+SG+T + +DN WK + YK+I+ L GRYR
Sbjct: 406 VAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRYR 465
Query: 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPR 541
N+MDMNA GGFAAA+ +WVMNVVP + + LG +YERGLIG Y DWCEAFSTYPR
Sbjct: 466 NIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPR 525
Query: 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKS 601
TYDLIHA+ +FS+Y+++C+ +ILLEMDRILRPEG VI RD V+ L+K++ I GMRW +
Sbjct: 526 TYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDA 585
Query: 602 QIMDHESGPFNPEKILFAAKTYWTGAS 628
+++DHE GP PEK+L A K YW S
Sbjct: 586 KLVDHEDGPLVPEKVLIAVKQYWVTNS 612
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/609 (56%), Positives = 418/609 (68%), Gaps = 26/609 (4%)
Query: 24 VLGVSGLCILFYVLGAWQTTTTPINQSEVY--TTRVSCNINAPQAGDGELNPSSLSSSAA 81
+L V GLC FY+LGAWQ + S T + C
Sbjct: 19 LLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCT----------------DIVTD 62
Query: 82 LDFESHH---QIEINSTVSLHEFPPCDMSYSDITPCQDPVRSRKFDREMAKYRERHCPKS 138
LDFE HH +I + F PCD+ D TPCQ+ R+ KF RE YRERHCP
Sbjct: 63 LDFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCPPD 122
Query: 139 EELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGG 198
E LRCL+PAP Y TPF WP+SRDY Y N P K L++EKAGQNW+Q +G+ F+FPGGG
Sbjct: 123 NEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGG 182
Query: 199 TTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEA 258
T FP GADAYI+ + +IP+ G++RTA+DTGCGVASWGAY+LKR++LTMSFA RD HEA
Sbjct: 183 TMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEA 242
Query: 259 QVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGG 318
QVQFALERGVPA+I V+ S LPYPARAFDMA CS CLIPW +G YL+EVDRVLRPGG
Sbjct: 243 QVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLRPGG 302
Query: 319 YWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHI 378
YW+LSGPPI+WK + + W RTK +L EQ IE IA+ LCW+K EK D+AI++K IN
Sbjct: 303 YWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDR 362
Query: 379 DCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGGALEKWPERAFSVP 438
C++S V C + D WYK++E C+TP P+VS+ +EVAGG L+K+PER F+VP
Sbjct: 363 SCDRSTPV----DTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVP 418
Query: 439 PRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMS 498
P IS G ++G+ E +ED LWK R+T YK+I+ L RYRNVMDMNA LGGFAAA+
Sbjct: 419 PSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYRNVMDMNAGLGGFAAALE 478
Query: 499 KYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDR 558
WVMNV+P N +TL +YERGLIG Y DWCE FSTYPRTYD IHASGVFS+YQ
Sbjct: 479 SPKSWVMNVIP-TINKNTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQHS 537
Query: 559 CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILF 618
C + +ILLE DRILRPEG VIFRD V++L +R I +GMRW +++MDHE GP PEKIL
Sbjct: 538 CKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILV 597
Query: 619 AAKTYWTGA 627
A K YW
Sbjct: 598 ATKQYWVAG 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust.
Identities = 280/520 (53%), Positives = 369/520 (70%), Gaps = 5/520 (0%)
Query: 101 FPPCDMSYSDITPCQDPVRSRKFDREMAKYRERHCPK-SEELLRCLIPAPPKYKTPFKWP 159
FP C ++++ PC DP +R++ E RERHCP ++E RCL+P P YKTPF WP
Sbjct: 91 FPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPWP 150
Query: 160 QSRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLT 219
+SR YAW+ N+P K L+ K QNW+++EG RF FPGGGT+FP G Y+D I ++PL
Sbjct: 151 ESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPLA 210
Query: 220 GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR 279
G+IRT +D GCGVAS+GA+LL ILTMS A RD HEAQVQFALERG+PAM+GV+S+ +
Sbjct: 211 SGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYK 270
Query: 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERT 339
LPYP+R+FDM HCS CL+ W YDGLYL+EVDRVLRP GYW+LSGPP+ + ++ +R
Sbjct: 271 LPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRD 330
Query: 340 KEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPD 399
++L+ + + + D+ +RLCW+K+ E + IW+KP NH+ C K K P +C +PD
Sbjct: 331 SKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPD 390
Query: 400 TAWYKDMEACITPLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNE 459
AWYK+ME CITPLP+V+ +++ L+ WPER V PR+ +GS+ G T + D
Sbjct: 391 AAWYKEMEPCITPLPDVNDTNKT---VLKNWPERLNHV-PRMKTGSIQGTTIAGFKADTN 446
Query: 460 LWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA 519
LW+ R+ YY G+YRNV+DMNA LGGFAAA+ KYP+WVMNVVPF P+TLG
Sbjct: 447 LWQRRVLYYDTKFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGV 506
Query: 520 IYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVI 579
+Y+RGLIGTY +WCEA STYPRTYDLIHA+GVFS+Y D+CDI +ILLEM RILRPEG VI
Sbjct: 507 VYDRGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEGAVI 566
Query: 580 FRDTVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFA 619
RD ++LVK+++IT MRW + ++ F+ IL
Sbjct: 567 IRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIV 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/533 (46%), Positives = 352/533 (66%), Gaps = 11/533 (2%)
Query: 101 FPPCDMSYSDITPCQDPVRSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQ 160
FP C + D TPC DP R +K+ + ERHCP E CLIP P YK P +WP+
Sbjct: 76 FPECGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPDGYKPPIRWPK 135
Query: 161 SRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIP-LT 219
SR+ WY N+P+ ++ +K+ Q+W++ EG +F FPGGGT FP G Y+D + +LIP +
Sbjct: 136 SREQCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMK 195
Query: 220 GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR 279
G +RTA+DTGCGVASWG LL R IL++S A RD HEAQVQFALERG+PA++G+IS++R
Sbjct: 196 DGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQR 255
Query: 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERT 339
LP+P+ AFDMAHCS CLIPW + G+YLLE+ R++RPGG+W+LSGPP+++ + WRGW T
Sbjct: 256 LPFPSNAFDMAHCSRCLIPWTEFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTT 315
Query: 340 KEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNK-SKVVYKTPQICGPD-N 397
ED K + + ++ + +C+KK +K+D+A+WQK + +K +K + P C
Sbjct: 316 MEDQKSDYNKLQSLLTSMCFKKYAQKDDIAVWQKLSDKSCYDKIAKNMEAYPPKCDDSIE 375
Query: 398 PDTAWYKDMEACIT-PLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLRE 456
PD+AWY + C+ P P+V S G++ KWPER P RI G + G +A L+
Sbjct: 376 PDSAWYTPLRPCVVAPTPKVKKS---GLGSIPKWPERLHVAPERI--GDVHGGSANSLKH 430
Query: 457 DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDT 516
D+ WK+R+ +YKK+ + RNVMDMN GGF+AA+ + P+WVMNVV +S ++
Sbjct: 431 DDGKWKNRVKHYKKVLPALGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYS-ANS 489
Query: 517 LGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEG 576
L +++RGLIGTY DWCEAFSTYPRTYDL+H +F++ RC++ ILLEMDRILRP G
Sbjct: 490 LPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPSG 549
Query: 577 TVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKTYWTGASK 629
VI R++ + I ++ +G+RW + + E EKIL K W +++
Sbjct: 550 YVIIRESSYFMDAITTLAKGIRWSCRREETEYA-VKSEKILVCQKKLWFSSNQ 601
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/563 (44%), Positives = 361/563 (64%), Gaps = 17/563 (3%)
Query: 70 ELNPSSLSSSAALDFESHHQIEINSTVSLHEFPPCDMSYSDITPCQDPVRSRKFDREMAK 129
E++ + + S++LD + Q++ +VS E C Y D TPC DP + +K+
Sbjct: 45 EVSDVAKAESSSLDVDDSLQVK---SVSFSE---CSSDYQDYTPCTDPRKWKKYGTHRLT 98
Query: 130 YRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEG 189
+ ERHCP + +CL+P P YK P +WP+S+D WY N+P+ ++ +K+ QNW++ EG
Sbjct: 99 FMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEG 158
Query: 190 HRFRFPGGGTTFPNGADAYIDNINELIP-LTGGNIRTAVDTGCGVASWGAYLLKRDILTM 248
+F FPGGGT FP+G AY+D + +LIP + G IRTA+DTGCGVASWG LL R ILT+
Sbjct: 159 EKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTV 218
Query: 249 SFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLL 308
S A RD HEAQVQFALERG+PA++G+IS++RLP+P+ +FDMAHCS CLIPW + G+YLL
Sbjct: 219 SLAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLL 278
Query: 309 EVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDL 368
EV R+LRPGG+W+LSGPP++++ W+GW+ T E+ + + ++++ +C+K +K+D+
Sbjct: 279 EVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKDDI 338
Query: 369 AIWQKPINHIDCNK-SKVVYKTPQICGPD-NPDTAWYKDMEAC-ITPLPEVSSSDEVAGG 425
A+WQK +++ NK S P C PD+AWY + C + P P++ +D
Sbjct: 339 AVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKLKKTDL---E 395
Query: 426 ALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMD 485
+ KWPER + P RIS + G + D+ WK R +YKK+ + RNVMD
Sbjct: 396 STPKWPERLHTTPERIS--DVPGGNGNVFKHDDSKWKTRAKHYKKLLPAIGSDKIRNVMD 453
Query: 486 MNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDL 545
MN GG AAA+ P+WVMNVV ++ +TL +++RGLIGTY DWCEAFSTYPRTYDL
Sbjct: 454 MNTAYGGLAAALVNDPLWVMNVVSSYA-ANTLPVVFDRGLIGTYHDWCEAFSTYPRTYDL 512
Query: 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMD 605
+H G+F+ RCD+ ++LEMDRILRP G I R++ I S+ + +RW +
Sbjct: 513 LHVDGLFTSESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQ 572
Query: 606 HESGPFNPEKILFAAKTYWTGAS 628
ES N EK+L K W ++
Sbjct: 573 TESASAN-EKLLICQKKLWYSSN 594
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/522 (45%), Positives = 320/522 (61%), Gaps = 31/522 (5%)
Query: 113 PCQDPVRSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPH 172
PC+DP R+ + REM YRERHCP EE CLIP P YK P WP+S W+ N+P+
Sbjct: 93 PCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPPSGYKIPVPWPESLHKIWHANMPY 152
Query: 173 KELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCG 232
+++ K Q W++ EG F FPGGGT FP GA YI+ + + IPL GG +RTA+D GCG
Sbjct: 153 NKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCG 212
Query: 233 VASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHC 292
VAS+G LL + IL +SFA RD+H++Q+QFALERGVPA + ++ ++RLP+PA +FD+ HC
Sbjct: 213 VASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHC 272
Query: 293 SGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIED 352
S CLIP+ Y+ Y +EVDR+LRPGGY ++SGPP+ W K + W ++
Sbjct: 273 SRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWA-----------DLQA 321
Query: 353 IAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDT-AWYKDMEACIT 411
+A+ LC++ + + IW+KP+ C S+ + ++C P + AWY ++ C+T
Sbjct: 322 VARALCYELIAVDGNTVIWKKPVGD-SCLPSQNEFGL-ELCDESVPPSDAWYFKLKRCVT 379
Query: 412 PLPEVSSSDEVAGGALEKWPERAFSVPPR--ISSGSLSGITAEKLREDNELWKDRMTYYK 469
V E A G + KWPER VP R + L A+ R W R+ YY+
Sbjct: 380 RPSSVKG--EHALGTISKWPERLTKVPSRAIVMKNGLDVFEADARR-----WARRVAYYR 432
Query: 470 KIDGLFHKG-RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGT 528
L K RNVMDMNA+ GGFAA ++ PVWVMNV+P P TL IY+RGLIG
Sbjct: 433 DSLNLKLKSPTVRNVMDMNAFFGGFAATLASDPVWVMNVIPAR-KPLTLDVIYDRGLIGV 491
Query: 529 YQDWCEAFSTYPRTYDLIHASGVFSIY------QDRCDITNILLEMDRILRPEGTVIFRD 582
Y DWCE FSTYPRTYD IH SG+ S+ + RC + ++++EMDRILRPEG V+ RD
Sbjct: 492 YHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRD 551
Query: 583 TVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKTYW 624
+ E+L K+ + +RW S I + E EKIL A K+ W
Sbjct: 552 SPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLW 593
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 629 | ||||||
| 255555861 | 630 | ATP binding protein, putative [Ricinus c | 0.993 | 0.992 | 0.802 | 0.0 | |
| 225426475 | 632 | PREDICTED: probable methyltransferase PM | 0.996 | 0.992 | 0.804 | 0.0 | |
| 224117704 | 625 | predicted protein [Populus trichocarpa] | 0.984 | 0.990 | 0.778 | 0.0 | |
| 449524418 | 636 | PREDICTED: probable methyltransferase PM | 0.995 | 0.984 | 0.763 | 0.0 | |
| 449456297 | 636 | PREDICTED: probable methyltransferase PM | 0.995 | 0.984 | 0.761 | 0.0 | |
| 356523799 | 629 | PREDICTED: probable methyltransferase PM | 0.985 | 0.985 | 0.753 | 0.0 | |
| 356513243 | 623 | PREDICTED: probable methyltransferase PM | 0.976 | 0.985 | 0.745 | 0.0 | |
| 218197399 | 631 | hypothetical protein OsI_21282 [Oryza sa | 0.982 | 0.979 | 0.729 | 0.0 | |
| 297605026 | 631 | Os06g0103900 [Oryza sativa Japonica Grou | 0.982 | 0.979 | 0.728 | 0.0 | |
| 297742493 | 565 | unnamed protein product [Vitis vinifera] | 0.890 | 0.991 | 0.730 | 0.0 |
| >gi|255555861|ref|XP_002518966.1| ATP binding protein, putative [Ricinus communis] gi|223541953|gb|EEF43499.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/628 (80%), Positives = 559/628 (89%), Gaps = 3/628 (0%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCN 60
MAKEYSGSPK HQLESKRKRLTW+ GVSGLCILFYVLGAWQ+T+ P N++EVY +V C+
Sbjct: 1 MAKEYSGSPKHHQLESKRKRLTWIFGVSGLCILFYVLGAWQSTSPPTNRAEVYN-KVGCD 59
Query: 61 INAPQAGDGELNPSSLSSSAALDFESHHQIEINSTVSLHEFPPCDMSYSDITPCQDPVRS 120
+ P A + SS SSSA LDF SHHQIEIN+T ++ EFPPCDMSYS+ TPCQ P R
Sbjct: 60 VATPTAANANP--SSSSSSALLDFNSHHQIEINTTDAVAEFPPCDMSYSEYTPCQHPERG 117
Query: 121 RKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKA 180
RKFDR M KYRERHCP EELL CLIPAPPKYKTPFKWPQSRDYAWYDNIPH+ELSIEKA
Sbjct: 118 RKFDRNMLKYRERHCPTKEELLLCLIPAPPKYKTPFKWPQSRDYAWYDNIPHRELSIEKA 177
Query: 181 GQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYL 240
QNWIQ+EG RFRFPGGGT FP GADAYID+INEL+PLTGG IRTA+DTGCGVASWGAYL
Sbjct: 178 VQNWIQLEGDRFRFPGGGTMFPRGADAYIDDINELVPLTGGAIRTAIDTGCGVASWGAYL 237
Query: 241 LKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300
LKRDIL MSFA RDTHEAQVQFALERGVPAMIG+++S+RLPYPARAFDMAHCS CLIPW
Sbjct: 238 LKRDILAMSFAPRDTHEAQVQFALERGVPAMIGIMASQRLPYPARAFDMAHCSRCLIPWN 297
Query: 301 MYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWK 360
YDGLYL+EVDRVLRPGGYWILSGPPI+WKKYWRGWERT+EDLKQEQD+IED+AKRLCWK
Sbjct: 298 NYDGLYLIEVDRVLRPGGYWILSGPPINWKKYWRGWERTQEDLKQEQDSIEDVAKRLCWK 357
Query: 361 KLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSD 420
K++EKNDL++WQKPINH++C +S+ +YKTP IC DNPD +WYKDMEACITPLPEVSSSD
Sbjct: 358 KVVEKNDLSVWQKPINHMECVRSRKIYKTPHICKSDNPDASWYKDMEACITPLPEVSSSD 417
Query: 421 EVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRY 480
EVAGGA+EKWPERAF++PPR+ SGS+ GI A+K +ED ELWKDR+++YK I +GRY
Sbjct: 418 EVAGGAVEKWPERAFAIPPRVLSGSIPGINAKKFKEDTELWKDRVSHYKHIISPLTQGRY 477
Query: 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP 540
RNVMDMNAYLGGFAAA+ KYPVWVMNVVP +S+ DTLG I+ERG IG YQDWCEAFSTYP
Sbjct: 478 RNVMDMNAYLGGFAAALLKYPVWVMNVVPANSDHDTLGVIFERGFIGAYQDWCEAFSTYP 537
Query: 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWK 600
RTYDLIHA GVFSIYQDRCDIT ILLEMDRILRPEGTVIFRDTVE+LVKI+SIT GMRWK
Sbjct: 538 RTYDLIHAGGVFSIYQDRCDITYILLEMDRILRPEGTVIFRDTVEVLVKIQSITNGMRWK 597
Query: 601 SQIMDHESGPFNPEKILFAAKTYWTGAS 628
SQIMDHESGPFNPEKIL A KTYWTG +
Sbjct: 598 SQIMDHESGPFNPEKILVAVKTYWTGQA 625
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426475|ref|XP_002270920.1| PREDICTED: probable methyltransferase PMT18 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/630 (80%), Positives = 557/630 (88%), Gaps = 3/630 (0%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTT-TPINQSEVYTTRVSC 59
MAKEYSGSPK HQLESKRKRLTW+LGVSGLCILFY+LGAWQ TT P NQSEVY+ RV C
Sbjct: 1 MAKEYSGSPKHHQLESKRKRLTWILGVSGLCILFYILGAWQNTTPAPSNQSEVYS-RVGC 59
Query: 60 NINAPQAGDGELNPSSLSSSAALDFESHHQIEINSTVSLHEFPPCDMSYSDITPCQDPVR 119
++ +P AGDG + SS SSA+LDFESHHQ+EIN++ FPPCDMSYS+ TPCQDPVR
Sbjct: 60 DVGSPAAGDGHSS-SSSLSSASLDFESHHQVEINNSGGTQSFPPCDMSYSEYTPCQDPVR 118
Query: 120 SRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEK 179
+RKFDR M KYRERHCP +ELL CLIPAPPKYK PFKWPQSRDYAWYDNIPHKELSIEK
Sbjct: 119 ARKFDRNMLKYRERHCPTKDELLLCLIPAPPKYKNPFKWPQSRDYAWYDNIPHKELSIEK 178
Query: 180 AGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAY 239
A QNWIQVEG RFRFPGGGT FP GADAYID+INELIPLTGG IRTA+DTGCGVASWGAY
Sbjct: 179 AVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTGGTIRTAIDTGCGVASWGAY 238
Query: 240 LLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299
LLKRDIL MSFA RDTHEAQVQFALERGVPAMIG+++S+R+PYPARAFDMAHCS CLIPW
Sbjct: 239 LLKRDILAMSFAPRDTHEAQVQFALERGVPAMIGILASQRMPYPARAFDMAHCSRCLIPW 298
Query: 300 YMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCW 359
YDGLYLLEVDRVLRPGGYWILSGPPI WKKYWRGWERT+EDLKQEQD IED+A RLCW
Sbjct: 299 NAYDGLYLLEVDRVLRPGGYWILSGPPIRWKKYWRGWERTQEDLKQEQDAIEDVAMRLCW 358
Query: 360 KKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSS 419
KK+ EK DLA+WQKPINHI C +S+ + KTP IC DNPDTAWY+DME CITPLP+V S
Sbjct: 359 KKVFEKGDLAVWQKPINHIRCVESRKLIKTPHICKSDNPDTAWYRDMETCITPLPDVRDS 418
Query: 420 DEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGR 479
+EVAGGALEKWP+RAFS+PPRI+SGSL GITA+ +EDNELWKDR+ +YK+I H+GR
Sbjct: 419 EEVAGGALEKWPKRAFSIPPRINSGSLPGITAQNFQEDNELWKDRVAHYKQIIRGLHQGR 478
Query: 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTY 539
YRNVMDMNAYLGGFAAA+ KY VWVMNV+P +SN DTLG IYERG IGTY DWCEAFSTY
Sbjct: 479 YRNVMDMNAYLGGFAAALLKYHVWVMNVIPANSNQDTLGVIYERGFIGTYHDWCEAFSTY 538
Query: 540 PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRW 599
PRTYDLIHAS VFSIYQDRCDIT+ILLE+DRILRPEGT IFRDTVE+LVKI+SIT+GMRW
Sbjct: 539 PRTYDLIHASNVFSIYQDRCDITHILLEIDRILRPEGTAIFRDTVEVLVKIQSITDGMRW 598
Query: 600 KSQIMDHESGPFNPEKILFAAKTYWTGASK 629
SQIMDHESGPFNPEKIL A K+YWTG +
Sbjct: 599 NSQIMDHESGPFNPEKILVAVKSYWTGEAN 628
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117704|ref|XP_002317647.1| predicted protein [Populus trichocarpa] gi|222860712|gb|EEE98259.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/624 (77%), Positives = 542/624 (86%), Gaps = 5/624 (0%)
Query: 6 SGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCNINAPQ 65
+GSPK HQLE+KRKRLTW+LGVSGLC+LFYVLGAWQ T P N ++ T+V+C+++
Sbjct: 3 NGSPKQHQLEAKRKRLTWILGVSGLCVLFYVLGAWQHTAAPTNLAQS-ITKVACDVS--N 59
Query: 66 AGDGELNPSSLSSSAALDFESHHQIEINSTVSLHEFPPCDMSYSDITPCQDPVRSRKFDR 125
NPSS SA LDF SHHQI+IN+T S++E PPCDMSYS+ TPCQDP R RKFDR
Sbjct: 60 VAGVSSNPSS--ESAVLDFNSHHQIQINNTDSVNEIPPCDMSYSEYTPCQDPQRGRKFDR 117
Query: 126 EMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWI 185
M KYRERHCP +ELL CLIPAPPKYKTPFKWPQSRDYAWYDNIPH ELSIEKA QNWI
Sbjct: 118 NMLKYRERHCPTKDELLLCLIPAPPKYKTPFKWPQSRDYAWYDNIPHNELSIEKAVQNWI 177
Query: 186 QVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI 245
QVEG RFRFPGGGT FP GADAYID+I+ELIPLT G+IRTA+DTGCGVASWGAYLLKRDI
Sbjct: 178 QVEGDRFRFPGGGTMFPRGADAYIDDISELIPLTDGSIRTAIDTGCGVASWGAYLLKRDI 237
Query: 246 LTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGL 305
+ MSFA RDTHEAQV FALERGVPAMIG+++S+RLPYPARAFDMAHCS CLIPW+ DGL
Sbjct: 238 IAMSFAPRDTHEAQVWFALERGVPAMIGIMASQRLPYPARAFDMAHCSRCLIPWHQNDGL 297
Query: 306 YLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365
YL+EVDRVLRPGGYWILSGPPIHWKKYWRGWERT +DLKQEQD IED+AKRLCWKK++EK
Sbjct: 298 YLIEVDRVLRPGGYWILSGPPIHWKKYWRGWERTAKDLKQEQDAIEDVAKRLCWKKVVEK 357
Query: 366 NDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGG 425
DL++WQKP+NHI+C S+ +YKTP IC DNPD AWYKDME CITPLPEVS SDEVAGG
Sbjct: 358 GDLSVWQKPLNHIECVASRKIYKTPHICKSDNPDAAWYKDMETCITPLPEVSGSDEVAGG 417
Query: 426 ALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMD 485
+EKWP RAF+VPPRI SGS+ GI AEK +EDN+LWKDR+ +YK I +GR+RN+MD
Sbjct: 418 VVEKWPARAFAVPPRIRSGSIPGINAEKFKEDNDLWKDRVAHYKNIISPLTQGRFRNIMD 477
Query: 486 MNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDL 545
MNA LGG AAA+ KYPVWVMNVVP +SNPDTLG IYERG IG+YQDWCEA STYPRTYDL
Sbjct: 478 MNAQLGGLAAALVKYPVWVMNVVPANSNPDTLGVIYERGFIGSYQDWCEAVSTYPRTYDL 537
Query: 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMD 605
IHA GVFSIYQDRCDIT+ILLEMDRILRPEGTVIFRDTVE+LVKI++IT GMRWKSQIMD
Sbjct: 538 IHAGGVFSIYQDRCDITHILLEMDRILRPEGTVIFRDTVEVLVKIQTITNGMRWKSQIMD 597
Query: 606 HESGPFNPEKILFAAKTYWTGASK 629
HESGPFNPEKIL A KTYWTG +K
Sbjct: 598 HESGPFNPEKILVAVKTYWTGEAK 621
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449524418|ref|XP_004169220.1| PREDICTED: probable methyltransferase PMT18-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/630 (76%), Positives = 548/630 (86%), Gaps = 4/630 (0%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCN 60
MAKEYSGSPK H LES+RKR+TW+L VSGLCIL Y+ GAWQ+TTTPINQSE Y+ +V C
Sbjct: 1 MAKEYSGSPKHHHLESRRKRVTWILAVSGLCILSYMFGAWQSTTTPINQSEAYS-KVGCP 59
Query: 61 INAPQAGDGELNPSSLSSSAALDFESHHQIEINSTVS--LHEFPPCDMSYSDITPCQDPV 118
+ + + S + + +LDF+SHH +EIN+T+ PCDMS+S+ TPCQDP
Sbjct: 60 DQTFPSTNTQSKAQSSTPTRSLDFDSHHGVEINNTIEAVTKTIFPCDMSFSEYTPCQDPT 119
Query: 119 RSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIE 178
R+RKFDR M KYRERHCP EELL C+IPAPPKYKTPFKWPQSRDYAWYDNIPH+ELSIE
Sbjct: 120 RARKFDRTMLKYRERHCPAKEELLHCMIPAPPKYKTPFKWPQSRDYAWYDNIPHRELSIE 179
Query: 179 KAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGA 238
KA QNWIQVEG RFRFPGGGT FP GADAYID+INELIPLT G IRTA+DTGCGVASWGA
Sbjct: 180 KAVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTTGKIRTAIDTGCGVASWGA 239
Query: 239 YLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298
YLLKRDI+ MSFA RDTHEAQVQFALERGVPAMIG+++S+RLPYPARAFDMAHCS CLIP
Sbjct: 240 YLLKRDIVAMSFAPRDTHEAQVQFALERGVPAMIGIMASQRLPYPARAFDMAHCSRCLIP 299
Query: 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLC 358
W DGLYL+E+DRVLRPGGYWILSGPPI WKKYWRGWERT+EDLK+EQDTIE++A+RLC
Sbjct: 300 WGKNDGLYLIELDRVLRPGGYWILSGPPIRWKKYWRGWERTQEDLKEEQDTIEEVARRLC 359
Query: 359 WKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSS 418
WKK+IEKNDLAIWQKP+NHI C K+K VYKTP IC DNPD WY++ME CITPLPEV+
Sbjct: 360 WKKVIEKNDLAIWQKPLNHIQCIKNKKVYKTPHICKSDNPDAGWYRNMETCITPLPEVND 419
Query: 419 SDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKG 478
S+EVAGGA+E WPERA +VPPRIS G++ GITAE EDN+LWK+R+TYYKK+ L +G
Sbjct: 420 SEEVAGGAVENWPERALAVPPRISRGTIPGITAENFEEDNKLWKERITYYKKMIPL-AQG 478
Query: 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFST 538
RYRN+MDMNA LGGFAAA+ K+PVWVMNVVP +S+ DTLG IYERGLIGTYQDWCEAFST
Sbjct: 479 RYRNIMDMNANLGGFAAALVKFPVWVMNVVPANSDRDTLGVIYERGLIGTYQDWCEAFST 538
Query: 539 YPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMR 598
YPRTYDLIHA+G+FSIYQDRCDIT ILLEMDRILRPEGTVIFRDTVE+LVKI++I++GM+
Sbjct: 539 YPRTYDLIHANGIFSIYQDRCDITQILLEMDRILRPEGTVIFRDTVEVLVKIQTISDGMK 598
Query: 599 WKSQIMDHESGPFNPEKILFAAKTYWTGAS 628
WKSQIMDHE+GPFNPEKIL A KTYWTG +
Sbjct: 599 WKSQIMDHETGPFNPEKILVAVKTYWTGET 628
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456297|ref|XP_004145886.1| PREDICTED: probable methyltransferase PMT18-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/630 (76%), Positives = 548/630 (86%), Gaps = 4/630 (0%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCN 60
MAKEYSGSPK H +ES+RKR+TW+L VSGLCIL Y+ GAWQ+TTTPINQSE Y+ +V C
Sbjct: 1 MAKEYSGSPKHHHIESRRKRVTWILAVSGLCILSYMFGAWQSTTTPINQSEAYS-KVGCP 59
Query: 61 INAPQAGDGELNPSSLSSSAALDFESHHQIEINSTVS--LHEFPPCDMSYSDITPCQDPV 118
+ + + S + + +LDF+SHH +EIN+T+ PCDMS+S+ TPCQDP
Sbjct: 60 DQTFPSTNTQSKAQSSTPTRSLDFDSHHGVEINNTIEAVTKTIFPCDMSFSEYTPCQDPT 119
Query: 119 RSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIE 178
R+RKFDR M KYRERHCP EELL C+IPAPPKYKTPFKWPQSRDYAWYDNIPH+ELSIE
Sbjct: 120 RARKFDRTMLKYRERHCPAKEELLHCMIPAPPKYKTPFKWPQSRDYAWYDNIPHRELSIE 179
Query: 179 KAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGA 238
KA QNWIQVEG RFRFPGGGT FP GADAYID+INELIPLT G IRTA+DTGCGVASWGA
Sbjct: 180 KAVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTTGKIRTAIDTGCGVASWGA 239
Query: 239 YLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298
YLLKRDI+ MSFA RDTHEAQVQFALERGVPAMIG+++S+RLPYPARAFDMAHCS CLIP
Sbjct: 240 YLLKRDIVAMSFAPRDTHEAQVQFALERGVPAMIGIMASQRLPYPARAFDMAHCSRCLIP 299
Query: 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLC 358
W DGLYL+E+DRVLRPGGYWILSGPPI WKKYWRGWERT+EDLK+EQDTIE++A+RLC
Sbjct: 300 WGKNDGLYLIELDRVLRPGGYWILSGPPIRWKKYWRGWERTQEDLKEEQDTIEEVARRLC 359
Query: 359 WKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSS 418
WKK+IEKNDLAIWQKP+NHI C K+K VYKTP IC DNPD WY++ME CITPLPEV+
Sbjct: 360 WKKVIEKNDLAIWQKPLNHIQCIKNKKVYKTPHICKSDNPDAGWYRNMETCITPLPEVND 419
Query: 419 SDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKG 478
S+EVAGGA+E WPERA +VPPRIS G++ GITAE EDN+LWK+R+TYYKK+ L +G
Sbjct: 420 SEEVAGGAVENWPERALAVPPRISRGTIPGITAENFEEDNKLWKERITYYKKMIPL-AQG 478
Query: 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFST 538
RYRN+MDMNA LGGFAAA+ K+PVWVMNVVP +S+ DTLG IYERGLIGTYQDWCEAFST
Sbjct: 479 RYRNIMDMNANLGGFAAALVKFPVWVMNVVPANSDRDTLGVIYERGLIGTYQDWCEAFST 538
Query: 539 YPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMR 598
YPRTYDLIHA+G+FSIYQDRCDIT ILLEMDRILRPEGTVIFRDTVE+LVKI++I++GM+
Sbjct: 539 YPRTYDLIHANGIFSIYQDRCDITQILLEMDRILRPEGTVIFRDTVEVLVKIQTISDGMK 598
Query: 599 WKSQIMDHESGPFNPEKILFAAKTYWTGAS 628
WKSQIMDHE+GPFNPEKIL A KTYWTG +
Sbjct: 599 WKSQIMDHETGPFNPEKILVAVKTYWTGET 628
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523799|ref|XP_003530522.1| PREDICTED: probable methyltransferase PMT18-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/624 (75%), Positives = 544/624 (87%), Gaps = 4/624 (0%)
Query: 7 GSPKPH-QLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCNINAPQ 65
GSPK + Q +SKR R+TW+LGVSGLCIL Y++GAW+ T +P +QSE+++ +V CNI +
Sbjct: 5 GSPKHYSQFDSKRNRMTWILGVSGLCILSYIMGAWKNTPSPNSQSEIFS-KVDCNIGSTS 63
Query: 66 AGDGELNPSSLSSSAALDFESHHQIEINSTVSLHEFPPCDMSYSDITPCQDPVRSRKFDR 125
AG + ++ SSS L+F+SHHQI+IN++ EFP CDMS+S+ TPCQDPVR RKFDR
Sbjct: 64 AGMSSSS-ATESSSTNLNFDSHHQIDINNSGGAQEFPSCDMSFSEYTPCQDPVRGRKFDR 122
Query: 126 EMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWI 185
M KYRERHCP ELL CLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKA QNWI
Sbjct: 123 NMLKYRERHCPAKNELLNCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAIQNWI 182
Query: 186 QVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI 245
QVEG RFRFPGGGT FP GADAYID+INELIPLT G IRTA+DTGCGVASWGAYLL+RDI
Sbjct: 183 QVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTSGTIRTAIDTGCGVASWGAYLLRRDI 242
Query: 246 LTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGL 305
L MSFA RDTHEAQVQFALERGVPAMIG+++S+R+PYPARAFDMAHCS CLIPW+ DGL
Sbjct: 243 LAMSFAPRDTHEAQVQFALERGVPAMIGIMASQRIPYPARAFDMAHCSRCLIPWHKLDGL 302
Query: 306 YLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365
YL+EVDRVLRPGGYWILSGPPI WKKYWRGWERT+EDLKQEQD IE++AKR+CW K++EK
Sbjct: 303 YLIEVDRVLRPGGYWILSGPPIRWKKYWRGWERTEEDLKQEQDAIEEVAKRICWTKVVEK 362
Query: 366 NDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGG 425
+DL+IWQKP NH+ C ++K +YKTP +C DNPD AWY++ME CITPLPEVSS+D+VAGG
Sbjct: 363 DDLSIWQKPKNHVGCAQTKQIYKTPHMCQSDNPDMAWYQNMEKCITPLPEVSSADKVAGG 422
Query: 426 ALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMD 485
ALEKWP+RAF+VPPRISSGS+ I AEK +DNE+W++R+ +YK + L +GRYRNVMD
Sbjct: 423 ALEKWPKRAFAVPPRISSGSIPNIDAEKFEKDNEVWRERIAHYKHLIPL-SQGRYRNVMD 481
Query: 486 MNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDL 545
MNAYLGGFAAA+ KYPVWVMNVVP +S+ DTLGAIYERG IGTY DWCEAFSTYPRTYDL
Sbjct: 482 MNAYLGGFAAALIKYPVWVMNVVPPNSDHDTLGAIYERGFIGTYHDWCEAFSTYPRTYDL 541
Query: 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMD 605
IHAS VF IYQDRC+IT+ILLEMDRILRPEGTV+FR+TVE+LVKI+SIT+GM+WKS IMD
Sbjct: 542 IHASNVFGIYQDRCNITHILLEMDRILRPEGTVVFRETVELLVKIKSITDGMKWKSNIMD 601
Query: 606 HESGPFNPEKILFAAKTYWTGASK 629
HESGPFNPEKIL A K YWTG +K
Sbjct: 602 HESGPFNPEKILVAQKAYWTGEAK 625
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513243|ref|XP_003525323.1| PREDICTED: probable methyltransferase PMT18-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/624 (74%), Positives = 540/624 (86%), Gaps = 10/624 (1%)
Query: 7 GSPKPH-QLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCNINAPQ 65
GSPK + Q +SKR RLTW+LGVSGLCIL Y++GAW+ T +P +QSE+ + +V CN+ +
Sbjct: 5 GSPKHYGQFDSKRNRLTWILGVSGLCILSYIMGAWKNTPSPNSQSEILS-KVDCNVGSTT 63
Query: 66 AGDGELNPSSLSSSAALDFESHHQIEINSTVSLHEFPPCDMSYSDITPCQDPVRSRKFDR 125
+ SS+ L+FESHHQI++N + EFPPCDMS+S+ TPCQDPVR RKFDR
Sbjct: 64 S-------GMSSSATNLNFESHHQIDVNDSGGAQEFPPCDMSFSEYTPCQDPVRGRKFDR 116
Query: 126 EMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWI 185
M KYRERHCP EELL CLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKA QNWI
Sbjct: 117 NMLKYRERHCPAKEELLNCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAIQNWI 176
Query: 186 QVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI 245
QVEG RFRFPGGGT FP GADAYID+INELIPLT G IRTA+DTGCGVASWGAYLLKRDI
Sbjct: 177 QVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTSGTIRTAIDTGCGVASWGAYLLKRDI 236
Query: 246 LTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGL 305
+ MSFA RDTHEAQVQFALERGVPAMIG+++S+R+PYPARAFDMAHCS CLIPW+ +DGL
Sbjct: 237 IAMSFAPRDTHEAQVQFALERGVPAMIGIMASQRIPYPARAFDMAHCSRCLIPWHKFDGL 296
Query: 306 YLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365
YL+EVDRVLRPGGYWILSGPPI WKKYWRGWERT+EDLKQEQD IE++AKR+CW K++EK
Sbjct: 297 YLIEVDRVLRPGGYWILSGPPIRWKKYWRGWERTEEDLKQEQDAIEEVAKRICWTKVVEK 356
Query: 366 NDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGG 425
+DL+IWQKP NH+ C ++K +YKTP +C DNPD AWY++ME CITPLPEV+S+D++AGG
Sbjct: 357 DDLSIWQKPKNHVGCAQTKQIYKTPHMCQSDNPDMAWYQNMEKCITPLPEVNSADKMAGG 416
Query: 426 ALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMD 485
ALEKWP+RAF+VPPRISSGS+ I EK ++DNE+W++R+ +YK + L +GRYRNVMD
Sbjct: 417 ALEKWPKRAFAVPPRISSGSIPSIDTEKFQKDNEVWRERIAHYKHLVPL-SQGRYRNVMD 475
Query: 486 MNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDL 545
MNAYLGGFAAA+ K+PVWVMNVVP +S+ DTLGAIYERG IGTY DWCEAFSTYPRTYDL
Sbjct: 476 MNAYLGGFAAALIKFPVWVMNVVPPNSDHDTLGAIYERGFIGTYHDWCEAFSTYPRTYDL 535
Query: 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMD 605
IHAS VF IYQDRC+IT ILLEMDRILRPEGTVIFR+TVE+LVKI+SIT+GM+WKS I+D
Sbjct: 536 IHASNVFGIYQDRCNITQILLEMDRILRPEGTVIFRETVELLVKIKSITDGMKWKSNIID 595
Query: 606 HESGPFNPEKILFAAKTYWTGASK 629
HESGPFNPEKIL A K YWTG +K
Sbjct: 596 HESGPFNPEKILVAEKAYWTGEAK 619
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218197399|gb|EEC79826.1| hypothetical protein OsI_21282 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/633 (72%), Positives = 532/633 (84%), Gaps = 15/633 (2%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQ-TTTTPINQSEVYTTRVSC 59
MAKE SGSPKP Q +R R+T +GV GLC+ Y+LGAWQ T+TT I+ S +YT
Sbjct: 1 MAKEQSGSPKPRQPVFQRMRVTLTIGVIGLCVASYILGAWQGTSTTSIHPSIIYTKS--- 57
Query: 60 NINAPQAGDGELNPSSLSS-----SAALDFESHHQIEIN-STVSLHEFPPCDMSYSDITP 113
Q G+ L SS SS A LDF++HHQ+ N S++ +FPPC + YS+ TP
Sbjct: 58 -----QCGESILRTSSNSSGRSSSDARLDFQAHHQVSFNESSLVAEKFPPCQLKYSEYTP 112
Query: 114 CQDPVRSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHK 173
CQDP R+RKF + M +YRERHCP+ EEL RCLIPAPPKYK PFKWPQ RD+AWYDNIPH+
Sbjct: 113 CQDPRRARKFPKTMMQYRERHCPRKEELFRCLIPAPPKYKNPFKWPQCRDFAWYDNIPHR 172
Query: 174 ELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGV 233
ELSIEKA QNWIQVEG RFRFPGGGT FP+GADAYID+IN LI LT GNIRTA+DTGCGV
Sbjct: 173 ELSIEKAVQNWIQVEGKRFRFPGGGTMFPHGADAYIDDINALISLTDGNIRTALDTGCGV 232
Query: 234 ASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCS 293
ASWGAYL+KR+I+TMSFA RD+HEAQVQFALERGVPAMIGVIS++R+PYPAR+FDMAHCS
Sbjct: 233 ASWGAYLIKRNIITMSFAPRDSHEAQVQFALERGVPAMIGVISTERIPYPARSFDMAHCS 292
Query: 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDI 353
CLIPW +DG+YL+EVDRVLRPGGYWILSGPPIHWKKY++GWERT+EDLKQEQD IED+
Sbjct: 293 RCLIPWNKFDGIYLIEVDRVLRPGGYWILSGPPIHWKKYFKGWERTEEDLKQEQDEIEDL 352
Query: 354 AKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPL 413
AKRLCWKK++EK+DLAIWQKPINHI+C S+ +Y+TPQIC ++ D+AWYK ME CI+PL
Sbjct: 353 AKRLCWKKVVEKDDLAIWQKPINHIECVNSRKIYETPQICKSNDVDSAWYKKMETCISPL 412
Query: 414 PEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDG 473
P+V+S DEVAGGALEKWP+RAF+VPPRIS GS+SG+T EK +EDN++W +R YYKK+
Sbjct: 413 PDVNSEDEVAGGALEKWPKRAFAVPPRISRGSVSGLTTEKFQEDNKVWAERADYYKKLIP 472
Query: 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWC 533
KGRYRNVMDMNA +GGFAAA+ KYP+WVMNVVP S DTLG IYERG IGTYQDWC
Sbjct: 473 PLTKGRYRNVMDMNAGMGGFAAALMKYPLWVMNVVPSGSAHDTLGIIYERGFIGTYQDWC 532
Query: 534 EAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSI 593
EAFSTYPRTYD IHA +FS YQDRCD+T ILLEMDRILRPEGTVIFRDTVE+LVKI+SI
Sbjct: 533 EAFSTYPRTYDFIHADKIFSFYQDRCDVTYILLEMDRILRPEGTVIFRDTVEVLVKIQSI 592
Query: 594 TEGMRWKSQIMDHESGPFNPEKILFAAKTYWTG 626
TEGMRWKSQIMDHESGPFNPEKIL A KTYWTG
Sbjct: 593 TEGMRWKSQIMDHESGPFNPEKILVAVKTYWTG 625
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297605026|ref|NP_001056546.2| Os06g0103900 [Oryza sativa Japonica Group] gi|55296764|dbj|BAD67956.1| dehydration-responsive protein-like [Oryza sativa Japonica Group] gi|222634811|gb|EEE64943.1| hypothetical protein OsJ_19817 [Oryza sativa Japonica Group] gi|255676637|dbj|BAF18460.2| Os06g0103900 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2504), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/633 (72%), Positives = 532/633 (84%), Gaps = 15/633 (2%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQ-TTTTPINQSEVYTTRVSC 59
MAKE SGSPKP Q +R R+T +GV GLC+ Y+LGAWQ T+TT I+ S +YT
Sbjct: 1 MAKEQSGSPKPRQPVFQRMRVTLTIGVIGLCVASYILGAWQGTSTTSIHPSIIYTKS--- 57
Query: 60 NINAPQAGDGELNPSSLSS-----SAALDFESHHQIEIN-STVSLHEFPPCDMSYSDITP 113
Q G+ L SS SS A LDF++HHQ+ N S++ +FPPC + YS+ TP
Sbjct: 58 -----QCGESILRTSSNSSGRSSSDARLDFQAHHQVSFNESSLVAEKFPPCQLKYSEYTP 112
Query: 114 CQDPVRSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHK 173
CQDP R+RKF + M +YRERHCP+ EEL RCLIPAPPKYK PFKWPQ RD+AWYDNIPH+
Sbjct: 113 CQDPRRARKFPKTMMQYRERHCPRKEELFRCLIPAPPKYKNPFKWPQCRDFAWYDNIPHR 172
Query: 174 ELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGV 233
ELSIEKA QNWIQVEG RFRFPGGGT FP+GADAYID+IN LI LT GNIRTA+DTGCGV
Sbjct: 173 ELSIEKAVQNWIQVEGKRFRFPGGGTMFPHGADAYIDDINALISLTDGNIRTALDTGCGV 232
Query: 234 ASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCS 293
ASWGAYL+KR+I+TMSFA RD+HEAQVQFALERGVPAMIGVIS++R+PYPAR+FDMAHCS
Sbjct: 233 ASWGAYLIKRNIITMSFAPRDSHEAQVQFALERGVPAMIGVISTERIPYPARSFDMAHCS 292
Query: 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDI 353
CLIPW +DG+YL+EVDRV+RPGGYWILSGPPIHWKKY++GWERT+EDLKQEQD IED+
Sbjct: 293 RCLIPWNKFDGIYLIEVDRVIRPGGYWILSGPPIHWKKYFKGWERTEEDLKQEQDEIEDL 352
Query: 354 AKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPL 413
AKRLCWKK++EK+DLAIWQKPINHI+C S+ +Y+TPQIC ++ D+AWYK ME CI+PL
Sbjct: 353 AKRLCWKKVVEKDDLAIWQKPINHIECVNSRKIYETPQICKSNDVDSAWYKKMETCISPL 412
Query: 414 PEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDG 473
P+V+S DEVAGGALEKWP+RAF+VPPRIS GS+SG+T EK +EDN++W +R YYKK+
Sbjct: 413 PDVNSEDEVAGGALEKWPKRAFAVPPRISRGSVSGLTTEKFQEDNKVWAERADYYKKLIP 472
Query: 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWC 533
KGRYRNVMDMNA +GGFAAA+ KYP+WVMNVVP S DTLG IYERG IGTYQDWC
Sbjct: 473 PLTKGRYRNVMDMNAGMGGFAAALMKYPLWVMNVVPSGSAHDTLGIIYERGFIGTYQDWC 532
Query: 534 EAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSI 593
EAFSTYPRTYD IHA +FS YQDRCD+T ILLEMDRILRPEGTVIFRDTVE+LVKI+SI
Sbjct: 533 EAFSTYPRTYDFIHADKIFSFYQDRCDVTYILLEMDRILRPEGTVIFRDTVEVLVKIQSI 592
Query: 594 TEGMRWKSQIMDHESGPFNPEKILFAAKTYWTG 626
TEGMRWKSQIMDHESGPFNPEKIL A KTYWTG
Sbjct: 593 TEGMRWKSQIMDHESGPFNPEKILVAVKTYWTG 625
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742493|emb|CBI34642.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/630 (73%), Positives = 501/630 (79%), Gaps = 70/630 (11%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTT-TPINQSEVYTTRVSC 59
MAKEYSGSPK HQLESKRKRLTW+LGVSGLCILFY+LGAWQ TT P NQSEVY+ RV
Sbjct: 1 MAKEYSGSPKHHQLESKRKRLTWILGVSGLCILFYILGAWQNTTPAPSNQSEVYS-RVG- 58
Query: 60 NINAPQAGDGELNPSSLSSSAALDFESHHQIEINSTVSLHEFPPCDMSYSDITPCQDPVR 119
++LDFESHHQ+EIN++ FPPCDMSYS+ TPCQDPVR
Sbjct: 59 --------------------SSLDFESHHQVEINNSGGTQSFPPCDMSYSEYTPCQDPVR 98
Query: 120 SRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEK 179
+RKFDR M KYRERHCP +ELL CLIPAPPKYK PFKWPQSRDYAWYDNIPHKELSIEK
Sbjct: 99 ARKFDRNMLKYRERHCPTKDELLLCLIPAPPKYKNPFKWPQSRDYAWYDNIPHKELSIEK 158
Query: 180 AGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAY 239
A QNWIQVEG RFRFPGGGT FP GADAYID+INELIPLTGG IRTA+DTGCGVASWGAY
Sbjct: 159 AVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDINELIPLTGGTIRTAIDTGCGVASWGAY 218
Query: 240 LLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299
LLKRDIL MSFA RDTHEAQVQFALERGVPAMIG+++S+R+PYPARAFDMAHCS CLIPW
Sbjct: 219 LLKRDILAMSFAPRDTHEAQVQFALERGVPAMIGILASQRMPYPARAFDMAHCSRCLIPW 278
Query: 300 YMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCW 359
YDGLYLLEVDRVLRPGGYWILSGPPI WKKYWRGWERT+EDLKQEQD IED+A RLCW
Sbjct: 279 NAYDGLYLLEVDRVLRPGGYWILSGPPIRWKKYWRGWERTQEDLKQEQDAIEDVAMRLCW 338
Query: 360 KKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSS 419
KK+ EK DLA+WQKPINHI C +S+ + KTP IC DNPDTAWY+DME CITPLP+
Sbjct: 339 KKVFEKGDLAVWQKPINHIRCVESRKLIKTPHICKSDNPDTAWYRDMETCITPLPD---- 394
Query: 420 DEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGR 479
DR+ +YK+I H+GR
Sbjct: 395 -------------------------------------------DRVAHYKQIIRGLHQGR 411
Query: 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTY 539
YRNVMDMNAYLGGFAAA+ KY VWVMNV+P +SN DTLG IYERG IGTY DWCEAFSTY
Sbjct: 412 YRNVMDMNAYLGGFAAALLKYHVWVMNVIPANSNQDTLGVIYERGFIGTYHDWCEAFSTY 471
Query: 540 PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRW 599
PRTYDLIHAS VFSIYQDRCDIT+ILLE+DRILRPEGT IFRDTVE+LVKI+SIT+GMRW
Sbjct: 472 PRTYDLIHASNVFSIYQDRCDITHILLEIDRILRPEGTAIFRDTVEVLVKIQSITDGMRW 531
Query: 600 KSQIMDHESGPFNPEKILFAAKTYWTGASK 629
SQIMDHESGPFNPEKIL A K+YWTG +
Sbjct: 532 NSQIMDHESGPFNPEKILVAVKSYWTGEAN 561
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 629 | ||||||
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.990 | 0.974 | 0.701 | 3.2e-255 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.980 | 0.974 | 0.684 | 8.4e-248 | |
| TAIR|locus:2050679 | 631 | AT2G45750 [Arabidopsis thalian | 0.952 | 0.949 | 0.580 | 2.4e-202 | |
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 0.957 | 0.951 | 0.555 | 4.8e-197 | |
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.947 | 0.967 | 0.559 | 6.9e-189 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.937 | 0.950 | 0.566 | 5.6e-187 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.826 | 0.851 | 0.536 | 2.2e-162 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.828 | 0.864 | 0.470 | 2.1e-141 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.821 | 0.861 | 0.464 | 5.1e-138 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.858 | 0.791 | 0.414 | 4.1e-120 |
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2457 (870.0 bits), Expect = 3.2e-255, P = 3.2e-255
Identities = 451/643 (70%), Positives = 517/643 (80%)
Query: 1 MAKEYSGSPKPHQL-ESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSC 59
MAKE S H L E+KRKRLTW+L VSGLCIL YVLG+WQT T P + SE Y+ R+ C
Sbjct: 1 MAKENSS----HSLAEAKRKRLTWILCVSGLCILSYVLGSWQTNTVPTSSSEAYS-RMGC 55
Query: 60 NINAP----QAGDGELNPXXXXXXXXX--------DFESHHQIEINST-VSLHEFPPCDM 106
+ + Q + NP DFESHH++E+ T ++ F PCDM
Sbjct: 56 DETSTTTRAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKLELKITNQTVKYFEPCDM 115
Query: 107 SYSDITPCQDPVRSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAW 166
S S+ TPC+D R R+FDR M KYRERHCP +ELL CLIP PP YK PFKWPQSRDYAW
Sbjct: 116 SLSEYTPCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAW 175
Query: 167 YDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTA 226
YDNIPHKELSIEKA QNWIQVEG RFRFPGGGT FP GADAYID+I LIPLT G IRTA
Sbjct: 176 YDNIPHKELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTA 235
Query: 227 VDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARA 286
+DTGCGVAS+GAYLLKRDI+ MSFA RDTHEAQVQFALERGVPA+IG++ S+RLPYPARA
Sbjct: 236 IDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARA 295
Query: 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQE 346
FD+AHCS CLIPW+ DGLYL EVDRVLRPGGYWILSGPPI+WKKYW+GWER++EDLKQE
Sbjct: 296 FDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQE 355
Query: 347 QDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGP-DNPDTAWYKD 405
QD+IED A+ LCWKK+ EK DL+IWQKPINH++CNK K V+KTP +C D PD AWYKD
Sbjct: 356 QDSIEDAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKD 415
Query: 406 MEACITPLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRM 465
+E+C+TPLPE +SSDE AGGALE WP RAF+VPPRI G++ I AEK REDNE+WK+R+
Sbjct: 416 LESCVTPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERI 475
Query: 466 TYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL 525
+YYK+I +GR+RN+MDMNAYLGGFAAAM KYP WVMNVVP + TLG I+ERG
Sbjct: 476 SYYKQIMPELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGF 535
Query: 526 IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE 585
IGTYQDWCE FSTYPRTYDLIHA G+FSIY++RCD+T ILLEMDRILRPEGTV+FRDTVE
Sbjct: 536 IGTYQDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVE 595
Query: 586 MLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKTYWTGAS 628
ML KI+SIT GMRWKS+I+DHE GPFNPEKIL A K+YWTG S
Sbjct: 596 MLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2387 (845.3 bits), Expect = 8.4e-248, P = 8.4e-248
Identities = 429/627 (68%), Positives = 504/627 (80%)
Query: 1 MAKEYSGSPKPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCN 60
MAKE SG HQ E++RK+LT +LGVSGLCILFYVLGAWQ T P S + +++ C
Sbjct: 1 MAKENSGHH--HQTEARRKKLTLILGVSGLCILFYVLGAWQANTVP---SSI--SKLGCE 53
Query: 61 INAPQAGDGELNPXXXXXXXXXDFESHHQIEINST-VSLHEFPPCDMSYSDITPCQDPVR 119
+ + + DF+SH+QIE+ T ++ F PC++S S+ TPC+D R
Sbjct: 54 TQSNPSSSS--SSSSSSESAELDFKSHNQIELKETNQTIKYFEPCELSLSEYTPCEDRQR 111
Query: 120 SRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEK 179
R+FDR M KYRERHCP +ELL CLIP PP YK PFKWPQSRDYAWYDNIPHKELS+EK
Sbjct: 112 GRRFDRNMMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEK 171
Query: 180 AGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAY 239
A QNWIQVEG RFRFPGGGT FP GADAYID+I LIPLT G IRTA+DTGCGVAS+GAY
Sbjct: 172 AVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAY 231
Query: 240 LLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299
LLKRDI+ +SFA RDTHEAQVQFALERGVPA+IG++ S+RLPYPARAFD+AHCS CLIPW
Sbjct: 232 LLKRDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 291
Query: 300 YMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCW 359
+ DGLYL+EVDRVLRPGGYWILSGPPI+WK+YWRGWERT+EDLK+EQD+IED+AK LCW
Sbjct: 292 FKNDGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCW 351
Query: 360 KKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSS 419
KK+ EK DL+IWQKP+NHI+C K K K+P IC DN D+AWYKD+E CITPLPE ++
Sbjct: 352 KKVTEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNP 411
Query: 420 DEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGR 479
D+ AGGALE WP+RAF+VPPRI G++ + AEK REDNE+WK+R+ +YKKI GR
Sbjct: 412 DDSAGGALEDWPDRAFAVPPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSHGR 471
Query: 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTY 539
+RN+MDMNA+LGGFAA+M KYP WVMNVVP + TLG IYERGLIGTYQDWCE FSTY
Sbjct: 472 FRNIMDMNAFLGGFAASMLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTY 531
Query: 540 PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRW 599
PRTYD+IHA G+FS+Y+ RCD+T ILLEMDRILRPEGTV+ RD VE L K+ I +GM+W
Sbjct: 532 PRTYDMIHAGGLFSLYEHRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKW 591
Query: 600 KSQIMDHESGPFNPEKILFAAKTYWTG 626
KSQI+DHE GPFNPEKIL A KTYWTG
Sbjct: 592 KSQIVDHEKGPFNPEKILVAVKTYWTG 618
|
|
| TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1958 (694.3 bits), Expect = 2.4e-202, P = 2.4e-202
Identities = 358/617 (58%), Positives = 452/617 (73%)
Query: 16 SKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCNINAPQAGDGELNPXX 75
+K+ L +V V+ LCI Y+LG WQ T +N + + P G N
Sbjct: 11 TKKANLYYVTLVALLCIASYLLGIWQNTA--VNPRAAFDD----SDGTPCEGFTRPN--- 61
Query: 76 XXXXXXXDFESHHQIEINSTVS--LHEFPPCDMSYSDITPCQDPVRSRKFDREMAKYRER 133
DF++HH I+ V+ FP C + S+ TPC+D RS KF RE +YR+R
Sbjct: 62 --STKDLDFDAHHNIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQR 119
Query: 134 HCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFR 193
HCP+ EE+L+C IPAP YKTPF+WP SRD AW+ N+PH EL++EK QNW++ E RF
Sbjct: 120 HCPEREEILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFW 179
Query: 194 FPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARR 253
FPGGGT FP GADAYID+I LI L+ G+IRTA+DTGCGVAS+GAYLL R+I TMSFA R
Sbjct: 180 FPGGGTMFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPR 239
Query: 254 DTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRV 313
DTHEAQVQFALERGVPAMIG++++ RLPYP+RAFD+AHCS CLIPW DG YL+EVDRV
Sbjct: 240 DTHEAQVQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRV 299
Query: 314 LRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQK 373
LRPGGYWILSGPPI+W+K W+GWERT +DL EQ IE +A+ LCWKK+++++DLAIWQK
Sbjct: 300 LRPGGYWILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQK 359
Query: 374 PINHIDCNKSKVVYKTPQICGPD-NPDTAWYKDMEACITPLPEVSSSDE---VAGGALEK 429
P NHIDC K++ V K P+ C D +PD AWY M++C+TPLPEV +++ VAGG +EK
Sbjct: 360 PFNHIDCKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEK 419
Query: 430 WPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKID-GLFHKGRYRNVMDMNA 488
WP R ++PPR++ G+L IT E E+ +LWK R++YYKK+D L GRYRN++DMNA
Sbjct: 420 WPARLNAIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNA 479
Query: 489 YLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHA 548
YLGGFAAA++ PVWVMNVVP + +TLG IYERGLIGTYQ+WCEA STYPRTYD IHA
Sbjct: 480 YLGGFAAALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHA 539
Query: 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHES 608
VF++YQ +C+ ILLEMDRILRP G VI RD V++L+K++ +T+G+ W+ +I DHE
Sbjct: 540 DSVFTLYQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHEK 599
Query: 609 GPFNPEKILFAAKTYWT 625
GP EKI +A K YWT
Sbjct: 600 GPHEREKIYYAVKQYWT 616
|
|
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1908 (676.7 bits), Expect = 4.8e-197, P = 4.8e-197
Identities = 344/619 (55%), Positives = 451/619 (72%)
Query: 14 LESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCNINAPQAGDGELNP 73
L +K+ L V+ ++ LC+ FY +G WQ + I++S + ++ + P + P
Sbjct: 15 LRAKQTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHELT---SVPCTFPHQTTP 71
Query: 74 XXXXXXXXXDFESHHQI-EINSTVS---LHEFPPCDMSYSDITPCQDPVRSRKFDREMAK 129
+F S H ++ T++ + + P C + +S+ TPC+ RS F RE
Sbjct: 72 IL-------NFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRERLI 124
Query: 130 YRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEG 189
YRERHCP+ E++RC IPAP Y PF+WP+SRD AW+ N+PH EL++EK QNW++ E
Sbjct: 125 YRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVRYEK 184
Query: 190 HRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMS 249
RF FPGGGT FP GADAYID I LI L G+IRTA+DTGCGVAS+GAYL+ R+I+TMS
Sbjct: 185 DRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMS 244
Query: 250 FARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLE 309
FA RDTHEAQVQFALERGVPA+IGV++S RLP+PARAFD+AHCS CLIPW Y+G YL+E
Sbjct: 245 FAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTYLIE 304
Query: 310 VDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLA 369
VDRVLRPGGYWILSGPPI+W+++W+GWERT++DL EQ IE +A+ LCW+KL+++ DLA
Sbjct: 305 VDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKLVQREDLA 364
Query: 370 IWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSD--EVAGGAL 427
+WQKP NH+ C ++++ P C P+ WY +E C+TPLPEV+ S+ EVAGG L
Sbjct: 365 VWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIKEVAGGQL 424
Query: 428 EKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDG-LFHKGRYRNVMDM 486
+WPER ++PPRI SGSL GIT ++ + E W+ R++YYKK D L GRYRN +DM
Sbjct: 425 ARWPERLNALPPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGRYRNFLDM 484
Query: 487 NAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLI 546
NA+LGGFA+A+ PVWVMNVVP ++ +TLG IYERGLIGTYQ+WCEA STYPRTYD I
Sbjct: 485 NAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFI 544
Query: 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDH 606
HA VFS+Y+DRCD+ +ILLEMDRILRP+G+VI RD +++L K++ IT+ M+W+ +I DH
Sbjct: 545 HADSVFSLYKDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQWEGRIGDH 604
Query: 607 ESGPFNPEKILFAAKTYWT 625
E+GP EKILF K YWT
Sbjct: 605 ENGPLEREKILFLVKEYWT 623
|
|
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1831 (649.6 bits), Expect = 6.9e-189, P = 6.9e-189
Identities = 349/624 (55%), Positives = 427/624 (68%)
Query: 10 KPHQLESKRKRLTWVLGVSGLCILFYVLGAWQTTTTPINQS---EVYTTRVSCNINAPQA 66
K + K + + V LC FY+LGAWQ + S E+ + CNI P
Sbjct: 4 KSSSADGKTRSSVQIFIVFSLCCFFYILGAWQRSGFGKGDSIALEMTNSGADCNI-VPS- 61
Query: 67 GDGELNPXXXXXXXXXDFESHHQIEINSTVSLHE------FPPCDMSYSDITPCQDPVRS 120
LN FE+HH E +S V E F PCD Y+D TPCQD R+
Sbjct: 62 ----LN-----------FETHHAGE-SSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRA 105
Query: 121 RKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKA 180
F R+ YRERHC E L CLIPAP Y TPF WP+SRDY Y N P+K L++EKA
Sbjct: 106 MTFPRDSMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKA 165
Query: 181 GQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYL 240
QNWIQ EG FRFPGGGT FP GAD YID + +IP+ G +RTA+DTGCGVASWGAYL
Sbjct: 166 IQNWIQYEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYL 225
Query: 241 LKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300
R++ MSFA RD+HEAQVQFALERGVPA+IGV+ + +LPYP RAFDMAHCS CLIPW
Sbjct: 226 WSRNVRAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWG 285
Query: 301 MYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWK 360
DG+YL+EVDRVLRPGGYWILSGPPI+WK ++ W+R KEDL++EQ IE+ AK LCW+
Sbjct: 286 ANDGMYLMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWE 345
Query: 361 KLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSD 420
K E ++AIWQK +N C +S+ C D+ D WYK MEACITP PE SSSD
Sbjct: 346 KKYEHGEIAIWQKRVNDEAC-RSRQDDPRANFCKTDDTDDVWYKKMEACITPYPETSSSD 404
Query: 421 EVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRY 480
EVAGG L+ +P+R +VPPRISSGS+SG+T + +DN WK + YK+I+ L GRY
Sbjct: 405 EVAGGELQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLLDTGRY 464
Query: 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP 540
RN+MDMNA GGFAAA+ +WVMNVVP + + LG +YERGLIG Y DWCEAFSTYP
Sbjct: 465 RNIMDMNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYP 524
Query: 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWK 600
RTYDLIHA+ +FS+Y+++C+ +ILLEMDRILRPEG VI RD V+ L+K++ I GMRW
Sbjct: 525 RTYDLIHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWD 584
Query: 601 SQIMDHESGPFNPEKILFAAKTYW 624
++++DHE GP PEK+L A K YW
Sbjct: 585 AKLVDHEDGPLVPEKVLIAVKQYW 608
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1813 (643.3 bits), Expect = 5.6e-187, P = 5.6e-187
Identities = 347/613 (56%), Positives = 425/613 (69%)
Query: 16 SKRKRLTW-VLGVSGLCILFYVLGAWQTTTTPINQSEVYTTRVSCNINAPQAGDGELNPX 74
+ R R T +L V GLC FY+LGAWQ + S ++ I QA ++
Sbjct: 10 NNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDS------IAMEITK-QAQCTDI--- 59
Query: 75 XXXXXXXXDFESHHQ-IEINSTVSLH--EFPPCDMSYSDITPCQDPVRSRKFDREMAKYR 131
DFE HH ++I F PCD+ D TPCQ+ R+ KF RE YR
Sbjct: 60 ----VTDLDFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYR 115
Query: 132 ERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEGHR 191
ERHCP E LRCL+PAP Y TPF WP+SRDY Y N P K L++EKAGQNW+Q +G+
Sbjct: 116 ERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNV 175
Query: 192 FRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFA 251
F+FPGGGT FP GADAYI+ + +IP+ G++RTA+DTGCGVASWGAY+LKR++LTMSFA
Sbjct: 176 FKFPGGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFA 235
Query: 252 RRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVD 311
RD HEAQVQFALERGVPA+I V+ S LPYPARAFDMA CS CLIPW +G YL+EVD
Sbjct: 236 PRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVD 295
Query: 312 RVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIW 371
RVLRPGGYW+LSGPPI+WK + + W RTK +L EQ IE IA+ LCW+K EK D+AI+
Sbjct: 296 RVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIF 355
Query: 372 QKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGGALEKWP 431
+K IN C++S V C + D WYK++E C+TP P+VS+ +EVAGG L+K+P
Sbjct: 356 RKKINDRSCDRSTPV----DTCKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKKFP 411
Query: 432 ERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLG 491
ER F+VPP IS G ++G+ E +ED LWK R+T YK+I+ L RYRNVMDMNA LG
Sbjct: 412 ERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIGSTRYRNVMDMNAGLG 471
Query: 492 GFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGV 551
GFAAA+ WVMNV+P N +TL +YERGLIG Y DWCE FSTYPRTYD IHASGV
Sbjct: 472 GFAAALESPKSWVMNVIPT-INKNTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGV 530
Query: 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPF 611
FS+YQ C + +ILLE DRILRPEG VIFRD V++L +R I +GMRW +++MDHE GP
Sbjct: 531 FSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPL 590
Query: 612 NPEKILFAAKTYW 624
PEKIL A K YW
Sbjct: 591 VPEKILVATKQYW 603
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1581 (561.6 bits), Expect = 2.2e-162, P = 2.2e-162
Identities = 282/526 (53%), Positives = 375/526 (71%)
Query: 93 NSTVSLHEFPPCDMSYSDITPCQDPVRSRKFDREMAKYRERHCPK-SEELLRCLIPAPPK 151
+S++S + FP C ++++ PC DP +R++ E RERHCP ++E RCL+P P
Sbjct: 84 SSSLSSY-FPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTG 142
Query: 152 YKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDN 211
YKTPF WP+SR YAW+ N+P K L+ K QNW+++EG RF FPGGGT+FP G Y+D
Sbjct: 143 YKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDV 202
Query: 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAM 271
I ++PL G+IRT +D GCGVAS+GA+LL ILTMS A RD HEAQVQFALERG+PAM
Sbjct: 203 ILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAM 262
Query: 272 IGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKK 331
+GV+S+ +LPYP+R+FDM HCS CL+ W YDGLYL+EVDRVLRP GYW+LSGPP+ +
Sbjct: 263 LGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRV 322
Query: 332 YWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQ 391
++ +R ++L+ + + + D+ +RLCW+K+ E + IW+KP NH+ C K K P
Sbjct: 323 KFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPG 382
Query: 392 ICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITA 451
+C +PD AWYK+ME CITPLP+V+ +++ L+ WPER VP R+ +GS+ G T
Sbjct: 383 LCSSSDPDAAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHVP-RMKTGSIQGTTI 438
Query: 452 EKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFH 511
+ D LW+ R+ YY G+YRNV+DMNA LGGFAAA+ KYP+WVMNVVPF
Sbjct: 439 AGFKADTNLWQRRVLYYDTKFKFLSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFD 498
Query: 512 SNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRI 571
P+TLG +Y+RGLIGTY +WCEA STYPRTYDLIHA+GVFS+Y D+CDI +ILLEM RI
Sbjct: 499 LKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDILLEMQRI 558
Query: 572 LRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKIL 617
LRPEG VI RD ++LVK+++IT MRW + ++ F+ IL
Sbjct: 559 LRPEGAVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTIL 604
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
Identities = 251/534 (47%), Positives = 354/534 (66%)
Query: 101 FPPCDMSYSDITPCQDPVRSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQ 160
FP C + D TPC DP R +K+ + ERHCP E CLIP P YK P +WP+
Sbjct: 76 FPECGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPDGYKPPIRWPK 135
Query: 161 SRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIP-LT 219
SR+ WY N+P+ ++ +K+ Q+W++ EG +F FPGGGT FP G Y+D + +LIP +
Sbjct: 136 SREQCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMK 195
Query: 220 GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR 279
G +RTA+DTGCGVASWG LL R IL++S A RD HEAQVQFALERG+PA++G+IS++R
Sbjct: 196 DGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQR 255
Query: 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERT 339
LP+P+ AFDMAHCS CLIPW + G+YLLE+ R++RPGG+W+LSGPP+++ + WRGW T
Sbjct: 256 LPFPSNAFDMAHCSRCLIPWTEFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTT 315
Query: 340 KEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDC-NK-SKVVYKTPQICGPD- 396
ED K + + ++ + +C+KK +K+D+A+WQK ++ C +K +K + P C
Sbjct: 316 MEDQKSDYNKLQSLLTSMCFKKYAQKDDIAVWQK-LSDKSCYDKIAKNMEAYPPKCDDSI 374
Query: 397 NPDTAWYKDMEACIT-PLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLR 455
PD+AWY + C+ P P+V S G++ KWPER P RI G + G +A L+
Sbjct: 375 EPDSAWYTPLRPCVVAPTPKVKKSGL---GSIPKWPERLHVAPERI--GDVHGGSANSLK 429
Query: 456 EDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPD 515
D+ WK+R+ +YKK+ + RNVMDMN GGF+AA+ + P+WVMNVV +S +
Sbjct: 430 HDDGKWKNRVKHYKKVLPALGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYS-AN 488
Query: 516 TLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPE 575
+L +++RGLIGTY DWCEAFSTYPRTYDL+H +F++ RC++ ILLEMDRILRP
Sbjct: 489 SLPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHLDSLFTLESHRCEMKYILLEMDRILRPS 548
Query: 576 GTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKTYWTGASK 629
G VI R++ + I ++ +G+RW + + E EKIL K W +++
Sbjct: 549 GYVIIRESSYFMDAITTLAKGIRWSCRREETEYA-VKSEKILVCQKKLWFSSNQ 601
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
Identities = 245/528 (46%), Positives = 342/528 (64%)
Query: 101 FPPCDMSYSDITPCQDPVRSRKFDREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQ 160
F C Y D TPC DP + +K+ + ERHCP + +CL+P P YK P +WP+
Sbjct: 70 FSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPK 129
Query: 161 SRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIP-LT 219
S+D WY N+P+ ++ +K+ QNW++ EG +F FPGGGT FP+G AY+D + +LIP +
Sbjct: 130 SKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMK 189
Query: 220 GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR 279
G IRTA+DTGCGVASWG LL R ILT+S A RD HEAQVQFALERG+PA++G+IS++R
Sbjct: 190 DGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQR 249
Query: 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERT 339
LP+P+ +FDMAHCS CLIPW + G+YLLEV R+LRPGG+W+LSGPP++++ W+GW+ T
Sbjct: 250 LPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTT 309
Query: 340 KEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNK-SKVVYKTPQICGPD-N 397
E+ + + ++++ +C+K +K+D+A+WQK +++ NK S P C
Sbjct: 310 IEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLE 369
Query: 398 PDTAWYKDMEACIT-PLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLRE 456
PD+AWY + C+ P P++ +D + KWPER + P RIS + G +
Sbjct: 370 PDSAWYTPLRPCVVVPSPKLKKTDLES---TPKWPERLHTTPERISD--VPGGNGNVFKH 424
Query: 457 DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDT 516
D+ WK R +YKK+ + RNVMDMN GG AAA+ P+WVMNVV ++ +T
Sbjct: 425 DDSKWKTRAKHYKKLLPAIGSDKIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYA-ANT 483
Query: 517 LGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEG 576
L +++RGLIGTY DWCEAFSTYPRTYDL+H G+F+ RCD+ ++LEMDRILRP G
Sbjct: 484 LPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFTSESQRCDMKYVMLEMDRILRPSG 543
Query: 577 TVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKTYW 624
I R++ I S+ + +RW + ES N EK+L K W
Sbjct: 544 YAIIRESSYFADSIASVAKELRWSCRKEQTESASAN-EKLLICQKKLW 590
|
|
| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
Identities = 237/572 (41%), Positives = 353/572 (61%)
Query: 65 QAGDGELNPXXXXXXXXXDFESHHQIEINST---VSLHEFPPCDMSYSDITPCQDPVRSR 121
Q GD ++ +FES +I ST VS+ +F C + ++ PC D V +
Sbjct: 111 QIGDYDVE-SAETLGNQTEFESSDDDDIKSTTARVSVRKFEICSENMTEYIPCLDNVEAI 169
Query: 122 KFDREMAKYR--ERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEK 179
K A+ ER+CP L C +P P Y++P WP+SRD W++N+PH +L +K
Sbjct: 170 KRLNSTARGERFERNCPNDGMGLNCTVPIPQGYRSPIPWPRSRDEVWFNNVPHTKLVEDK 229
Query: 180 AGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIP-LTGGN-IRTAVDTGCGVASWG 237
GQNWI E +F+FPGGGT F +GAD Y+D I+++IP ++ GN R +D GCGVAS+G
Sbjct: 230 GGQNWIYKENDKFKFPGGGTQFIHGADQYLDQISQMIPDISFGNHTRVVLDIGCGVASFG 289
Query: 238 AYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLI 297
AYL+ R++LTMS A +D HE Q+QFALERGVPAM+ +++RL YP++AFD+ HCS C I
Sbjct: 290 AYLMSRNVLTMSIAPKDVHENQIQFALERGVPAMVAAFTTRRLLYPSQAFDLVHCSRCRI 349
Query: 298 PWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRL 357
W DG+ LLEV+R+LR GGY++ + P++ K+ ++ L+++ + + ++ RL
Sbjct: 350 NWTRDDGILLLEVNRMLRAGGYFVWAAQPVY--KH-------EKALEEQWEEMLNLTTRL 400
Query: 358 CWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGP-DNPDTAWYKDMEACITPLPEV 416
CW + ++ +AIWQKP+N+ C S+ +P +C D+PD WY D++ACIT + E
Sbjct: 401 CWVLVKKEGYIAIWQKPVNNT-CYLSRGAGVSPPLCNSEDDPDNVWYVDLKACITRIEEN 459
Query: 417 SSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEK--LREDNELWKDRMTYYKKIDGL 474
G L WP R + P R+ + + A K +++ WK+ ++ Y ++ L
Sbjct: 460 GY-----GANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIISNY--VNAL 512
Query: 475 FHKG-RYRNVMDMNAYLGGFAAAMSKYPV--WVMNVVPFHSNPDTLGAIYERGLIGTYQD 531
K RNV+DM A GGFAAA+++ V WV+NV+P S P+TL IY+RGL+G D
Sbjct: 513 HWKQIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPV-SGPNTLPVIYDRGLLGVMHD 571
Query: 532 WCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIR 591
WCE F TYPRTYDL+HA+G+FSI + RC++T ++LEMDRILRP G V RDT+ + +++
Sbjct: 572 WCEPFDTYPRTYDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDTINVTSELQ 631
Query: 592 SITEGMRWKSQIMDHESGPFNPEKILFAAKTY 623
I MRW + + + GP + ++L K +
Sbjct: 632 EIGNAMRWHTSLRETAEGPHSSYRVLLCEKRF 663
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9C884 | PMTI_ARATH | 2, ., 1, ., 1, ., - | 0.7076 | 0.9904 | 0.9749 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00000452001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (632 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 629 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-05 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 857 bits (2217), Expect = 0.0
Identities = 316/518 (61%), Positives = 389/518 (75%), Gaps = 18/518 (3%)
Query: 110 DITPCQDPVRSRKF--DREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWY 167
D PC D R+ KF RE ++RERHCP SEE LRCL+P P YKTP WP+SRD WY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 168 DNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPL--TGGNIRT 225
N+PH +L+ EK GQNW++VEG +FRFPGGGT FP+GADAYID + ++IP GG +RT
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 226 AVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPAR 285
A+D GCGVAS+GAYLL RD+LTMSFA +D HEAQVQFALERGVPAM+GV+ ++RLPYP+R
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQ 345
+FDMAHCS CLIPW+ DG+ LLEVDRVLRPGGY++LSGPP++ R +EDL++
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARDEEDLQE 232
Query: 346 EQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGP-DNPDTAWYK 404
E +E +AK LCWK + +K D+AIWQKP+N+ C + K P +C D+PD AWY
Sbjct: 233 EWKAMEALAKSLCWKLVAKKGDIAIWQKPVNN-SCYNKREPGKKPPLCKDSDDPDAAWYV 291
Query: 405 DMEACITPLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDR 464
MEACITPLPEVS EV GG LEKWPER +VPPR++SG + G++AE + D ELWK R
Sbjct: 292 PMEACITPLPEVSH--EVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRR 349
Query: 465 MTYYKKIDGLF-HKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER 523
++ YK++ L KGR RNVMDMNA GGFAAA+ PVWVMNVVP S PDTL IY+R
Sbjct: 350 VSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDS-PDTLPVIYDR 408
Query: 524 GLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583
GLIG Y DWCE FSTYPRTYDL+HA +FS+Y+ RC++ +ILLEMDRILRP G VI RD
Sbjct: 409 GLIGIYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDD 468
Query: 584 VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621
V++L K++ I + MRW+ +I D E GP +PEKIL A K
Sbjct: 469 VDVLDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 227 VDTGCGVASWGAYLLKRDILTMSFARR----DTHEAQVQFALERGVPAMIGVISSKRLPY 282
+D GCG L +R R D + A +R + V ++ LP+
Sbjct: 1 LDVGCGTGLLAEALARR------GGARVTGVDLSPEMLALARKRAPRKFV-VGDAEDLPF 53
Query: 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGY 319
P +FD+ S L L E+ RVL+PGG
Sbjct: 54 PDESFDVVVSSLVL-HHLPDPERALREIARVLKPGGK 89
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 629 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.96 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.85 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.68 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.62 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.62 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.59 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.55 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.53 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.51 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.5 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.49 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.49 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.47 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.46 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.44 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.44 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.43 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.43 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.42 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.42 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.41 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.41 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.41 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.41 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.4 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.39 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.39 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.39 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.38 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.38 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.37 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.37 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.35 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.33 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.33 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.32 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.32 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.31 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.3 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.29 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.29 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.27 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.27 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.24 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.24 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.23 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.22 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.22 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.22 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.22 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.22 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.21 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.2 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.18 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.18 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.17 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.15 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.15 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.14 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.14 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.13 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.12 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.11 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.1 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.1 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.09 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.08 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.07 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.07 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.06 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.05 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.05 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.04 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.04 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.04 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.03 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.03 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.03 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.02 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.0 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.99 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.99 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.97 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.97 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.96 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.96 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.96 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.96 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.96 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.95 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.95 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.94 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.94 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.94 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.94 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.92 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.92 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.87 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.87 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.87 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.87 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.87 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.85 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.85 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.85 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.84 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.84 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.84 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.8 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.8 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.78 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.75 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.74 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.74 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.73 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.7 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.7 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.7 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.69 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.68 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.68 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.66 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.66 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.66 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.66 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.66 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.65 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.6 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.6 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.59 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.59 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.59 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.58 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.57 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.56 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.56 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.55 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.55 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.54 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.53 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.53 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.53 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.51 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.49 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.49 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.48 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.48 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.47 | |
| PLN02366 | 308 | spermidine synthase | 98.47 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.46 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.46 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.46 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.45 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.45 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.44 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.42 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.42 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.41 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.4 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.4 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.4 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.38 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.38 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.37 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.37 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.36 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.36 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.36 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.35 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.35 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.34 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.34 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.32 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.32 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.32 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.31 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.31 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.28 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.27 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.26 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.26 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.24 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.21 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.21 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.21 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.2 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.2 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.18 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.16 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.16 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.15 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.15 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.15 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.14 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.14 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.14 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.13 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.12 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.09 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.09 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.09 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.09 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.09 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.08 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.07 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.05 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.04 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.03 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.02 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.02 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.01 | |
| PLN02476 | 278 | O-methyltransferase | 98.01 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.01 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.0 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.0 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.0 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.97 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.95 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.94 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 97.92 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.92 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.9 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.9 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.89 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 97.88 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.88 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 97.87 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 97.87 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.86 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.85 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.84 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.84 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 97.84 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 97.83 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 97.83 | |
| PLN02823 | 336 | spermine synthase | 97.83 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.83 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.83 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 97.82 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.8 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.79 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.77 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 97.77 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.75 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 97.72 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 97.72 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 97.72 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 97.71 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 97.71 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.7 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.69 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.68 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.68 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.67 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 97.67 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 97.67 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 97.66 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.65 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.65 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.64 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.64 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 97.63 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.62 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.62 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.62 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.61 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.61 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.6 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.59 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.58 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.57 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.56 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.52 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.51 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.51 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 97.51 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.5 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.47 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 97.46 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 97.45 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.42 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.41 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.4 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.37 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.35 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.35 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 97.34 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.32 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.31 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.31 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 97.3 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 97.28 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.28 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 97.26 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.24 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.24 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.23 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 97.22 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.21 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.2 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.16 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.14 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.13 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.12 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.11 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.1 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.1 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.1 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.1 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.07 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.05 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.03 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 97.03 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.99 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.99 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 96.99 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.96 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 96.96 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 96.95 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 96.93 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.93 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 96.93 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.82 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.81 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.81 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.8 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.79 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 96.79 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 96.78 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 96.76 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 96.75 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.63 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 96.59 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.57 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 96.56 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.55 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 96.52 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 96.51 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 96.49 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 96.36 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.35 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.33 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.33 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.32 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 96.29 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 96.28 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.28 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 96.27 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 96.24 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.22 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 96.22 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.18 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 96.14 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 96.12 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 96.11 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.07 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 96.03 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.95 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 95.95 | |
| PLN02366 | 308 | spermidine synthase | 95.93 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.91 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.9 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 95.75 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 95.72 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 95.66 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.47 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.35 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.34 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 95.23 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.21 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 95.2 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 95.19 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 95.16 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.15 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 95.13 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.06 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 94.9 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 94.82 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 94.75 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.58 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.48 | |
| PLN02476 | 278 | O-methyltransferase | 94.44 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 94.36 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 94.35 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.33 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.13 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 94.12 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 93.9 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.76 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 93.76 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 93.72 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 93.5 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.48 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 93.42 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 93.35 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 93.16 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.0 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 92.71 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 92.67 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.62 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 92.53 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 92.45 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.25 | |
| PLN02823 | 336 | spermine synthase | 92.14 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 92.12 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 92.03 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 91.92 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 91.85 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 91.78 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 91.67 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 91.31 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 91.21 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 91.19 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 91.03 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 90.87 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 90.85 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 90.84 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 90.46 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 90.36 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 90.34 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 90.27 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 90.23 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 90.11 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 89.71 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 89.59 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 89.45 | |
| PHA01634 | 156 | hypothetical protein | 89.28 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 88.82 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 88.71 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.56 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 88.08 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 88.05 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 87.67 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 87.49 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 87.37 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 87.36 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 87.21 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 87.12 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 86.94 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 86.91 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 86.78 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 86.52 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 86.43 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 86.23 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 85.37 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 85.04 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.99 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 84.74 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 84.62 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 84.45 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 84.21 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 84.01 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 83.68 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 83.09 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 82.9 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 82.2 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 81.63 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 81.56 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 81.13 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 81.11 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 80.49 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 80.31 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 80.31 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-151 Score=1214.71 Aligned_cols=500 Identities=64% Similarity=1.173 Sum_probs=486.3
Q ss_pred CccccCCchhhhhc--hHhhhhhhhCCCCCCCCccccccCCCCCCCCCCCCCCCccccccccCCCcchhhhhhcCccEee
Q 006834 110 DITPCQDPVRSRKF--DREMAKYRERHCPKSEELLRCLIPAPPKYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQV 187 (629)
Q Consensus 110 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~~~~clvp~p~~y~~P~~wP~s~~~~w~~n~p~~~L~~~k~~q~Wv~~ 187 (629)
|||||+|+.+++++ +++++++||||||+.+++++||||+|++|+.|++||+|||++||+|+||++|+.+|+.|||+++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeecCCCCCCCCchHHHHHHHHhhcCc--cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH
Q 006834 188 EGHRFRFPGGGTTFPNGADAYIDNINELIPL--TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE 265 (629)
Q Consensus 188 ~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~--~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e 265 (629)
+|++|.||||||+|++|+..|+++|.++++. ..+..|++||+|||+|+|+++|+++++.++++++.|.++.++|+|.|
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999998 67788999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhh
Q 006834 266 RGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQ 345 (629)
Q Consensus 266 rg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~ 345 (629)
||+++.+.+...++|||++++||+|||+.|+++|..+.+.+|.|++|+|||||||++++|+.+ +++.++...
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999988889999999999999999999999998888999999999999999999999987 366778889
Q ss_pred HHHHHHHHHHHhcceeecccCceEEEeccCCccccccccccCCCCCCCC-CCCCCCccccccccccccCccCCCcccccC
Q 006834 346 EQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICG-PDNPDTAWYKDMEACITPLPEVSSSDEVAG 424 (629)
Q Consensus 346 ~~~~ie~l~~~l~w~~v~~~~~~aiwqKp~~~~~c~~~r~~~~~p~lC~-~~~~d~~wy~~~~~ci~~~p~~~~~~~~~~ 424 (629)
+++.|++++++|||++++++++++|||||.++ +||.+|+..+.|++|+ ++|||++||++|++|||++|++.+ +.++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~ 309 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccc
Confidence 99999999999999999999999999999998 9999999889999999 899999999999999999998765 6788
Q ss_pred CccccCcccccCCCccccCCCCCCcchhhchhhHHHHHHHHHHHHHhhc-ccCCCCeeEEEeecccchhHHhhhhCCCeE
Q 006834 425 GALEKWPERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDG-LFHKGRYRNVMDMNAYLGGFAAAMSKYPVW 503 (629)
Q Consensus 425 ~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~-~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~ 503 (629)
+++++||+||+++|+||.+|++.|+++|.|++|+++|+++|++|++++. .|++++||||||||||||||||||.+++||
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VW 389 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVW 389 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCce
Confidence 9999999999999999999999999999999999999999999999887 799999999999999999999999999999
Q ss_pred EEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 504 VMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 504 ~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
||||||+..+ |||++||||||||+||||||+|||||||||||||++|||.|++||++++||+||||||||||++||||+
T Consensus 390 VMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 390 VMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred EEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 9999999887 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 584 VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 584 ~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
.+++.+|++|+++|||+++++|+|+||+++||||||||
T Consensus 469 ~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 469 VDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 99999999999999999999999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-30 Score=278.14 Aligned_cols=192 Identities=18% Similarity=0.326 Sum_probs=148.8
Q ss_pred ccccccccCccCCCcccccCCccccCcccccCCCccccCCCCCCcchh----------------hchhhHHHHHHHHHHH
Q 006834 405 DMEACITPLPEVSSSDEVAGGALEKWPERAFSVPPRISSGSLSGITAE----------------KLREDNELWKDRMTYY 468 (629)
Q Consensus 405 ~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~~~----------------~f~~d~~~w~~~v~~y 468 (629)
....|+.|.|.. -..+-+||+.-..+ |+++ ++.-... .|-.....+++++.+|
T Consensus 33 ~~~~CLVp~P~g-------Yk~P~~WP~SRd~i--W~~N--vph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Y 101 (506)
T PF03141_consen 33 ERLRCLVPPPKG-------YKTPIPWPKSRDYI--WYAN--VPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHY 101 (506)
T ss_pred CCCccccCCCcc-------CCCCCCCCccccee--eecc--cCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHH
Confidence 456799888742 24578899887654 3332 2222111 1333344566788888
Q ss_pred HHhhc---cc--CCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cc
Q 006834 469 KKIDG---LF--HKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RT 542 (629)
Q Consensus 469 ~~~~~---~~--~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t 542 (629)
...+. ++ ..|+||++||+|||+|+|||+|.+++|.+|+++|.+.++++.|+++|||+..++........+|| ++
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~ 181 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNA 181 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccc
Confidence 86554 23 55899999999999999999999999999999999999999999999999777765555566677 99
Q ss_pred cceeeccccccccCCCcCHHH------HHHHHhhcccCCcEEEEEeC----------HHHHHHHHHHHhcCCCeEEEeec
Q 006834 543 YDLIHASGVFSIYQDRCDITN------ILLEMDRILRPEGTVIFRDT----------VEMLVKIRSITEGMRWKSQIMDH 606 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~------~l~e~dRiLrPgG~~i~~d~----------~~~~~~~~~~~~~l~w~~~~~~~ 606 (629)
|||+|| +||.+.| +|+|+|||||||||||++.+ .+.+.+|++++++|||+.....
T Consensus 182 fDmvHc--------src~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~- 252 (506)
T PF03141_consen 182 FDMVHC--------SRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEK- 252 (506)
T ss_pred hhhhhc--------ccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheee-
Confidence 999999 6666665 99999999999999999733 4679999999999999986642
Q ss_pred CCCCCCCceEEEEEecc
Q 006834 607 ESGPFNPEKILFAAKTY 623 (629)
Q Consensus 607 e~~~~~~e~~l~~~K~~ 623 (629)
..+.|.||+.
T Consensus 253 -------~~~aIwqKp~ 262 (506)
T PF03141_consen 253 -------GDTAIWQKPT 262 (506)
T ss_pred -------CCEEEEeccC
Confidence 3399999974
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=209.83 Aligned_cols=329 Identities=15% Similarity=0.135 Sum_probs=180.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCC--CCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSK--RLPYP 283 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~--~Lp~p 283 (629)
...+.+.+....+. +|||+|||+|.++..|++.+. .++++|+++.+++.+++.. .++.+.+.|.. .++++
T Consensus 26 ~~~il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 26 RPEILSLLPPYEGK--SVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhHHHhhcCccCCC--EEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 34555666544333 899999999999999998864 4567799999999887542 35778888874 46788
Q ss_pred CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 284 ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
+++||+|+|..+++|+..+ ...++.++.|+|||||++++............. ...+..+.. ...+..+...-.+...
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~-~~~~~~~~~-~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR-KNNPTHYRE-PRFYTKVFKECHTRDE 178 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc-cCCCCeecC-hHHHHHHHHHheeccC
Confidence 8999999999999888643 467999999999999999997532211100000 001111111 2223333333222222
Q ss_pred ccc-Cce-EEEeccCCccccccccccCCCCCCCCCCCCCCccccccccccccCccCCCcccccCCccccCcccccCCCcc
Q 006834 363 IEK-NDL-AIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGGALEKWPERAFSVPPR 440 (629)
Q Consensus 363 ~~~-~~~-aiwqKp~~~~~c~~~r~~~~~p~lC~~~~~d~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~ 440 (629)
... ..+ ..+-++++. |.. |...|..-+..=. +++.. + ......+=+|+.-.+
T Consensus 179 ~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~-~~~~~----~--~~~~~~~~~~~~y~~-- 232 (475)
T PLN02336 179 DGNSFELSLVGCKCIGA---YVK--------------NKKNQNQICWLWQ-KVSST----N--DKGFQRFLDNVQYKS-- 232 (475)
T ss_pred CCCEEEEEEEEeechhh---hhh--------------ccCCcceEEEEEE-eecCC----c--chhHHHHhhhhcccc--
Confidence 111 001 111122111 111 1111111110000 00000 0 011122222211001
Q ss_pred ccCCCCCCcc-hhhchhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH
Q 006834 441 ISSGSLSGIT-AEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA 519 (629)
Q Consensus 441 ~~~~~~~~~~-~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~ 519 (629)
+|+. .+.|-.....+...|..-..++..+....-..|||+|||.|+++..|++.. -.+|+.+|.++.++..
T Consensus 233 ------~~i~~~~~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~ 304 (475)
T PLN02336 233 ------SGILRYERVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISF 304 (475)
T ss_pred ------ccHHHHHHHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHH
Confidence 1110 111211112222233322333332222233569999999999999988752 1255666666678877
Q ss_pred HHhhc--c---cceec-cccccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 520 IYERG--L---IGTYQ-DWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 520 ~~erg--l---i~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+.++- + +...+ |+.+ .++| .+||+|.+.+++-... +.+.+|.|+.|+|||||.++|.|.
T Consensus 305 A~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 305 ALERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQ---DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred HHHHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECCcccccC---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 76542 2 22222 3322 2355 7899999977765443 458899999999999999999863
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=159.65 Aligned_cols=115 Identities=24% Similarity=0.285 Sum_probs=97.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCC-----eEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVP-----AMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~-----~~~~v~d~~~L 280 (629)
..+.+.+.+.+...+|. +|||||||||.++..+++... ...++++|+|+.|++.|+++..+ +.|+++|++.|
T Consensus 37 ~~Wr~~~i~~~~~~~g~--~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 37 RLWRRALISLLGIKPGD--KVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHHHHHHHhhCCCCCC--EEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC
Confidence 34455555665554444 999999999999999999764 44778889999999999988543 78999999999
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
||+|++||+|.+++.|.+.. +...+|+|++|||||||.+++..
T Consensus 114 Pf~D~sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CCCCCccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999999999999997776 99999999999999999988864
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=129.30 Aligned_cols=92 Identities=29% Similarity=0.439 Sum_probs=79.1
Q ss_pred EEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCH
Q 006834 227 VDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYD 303 (629)
Q Consensus 227 LDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~ 303 (629)
||+|||+|.++..|+++ +. .++++|+++++++.++++.. ...+...+...+|+++++||+|++..+++|+ +++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHH
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCH
Confidence 89999999999999999 44 56777999999999998753 4568999999999999999999999999888 588
Q ss_pred HHHHHHHHhcccCCcEEEE
Q 006834 304 GLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 304 ~~~L~el~RvLKPGG~lii 322 (629)
..+++|+.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=154.50 Aligned_cols=111 Identities=23% Similarity=0.311 Sum_probs=81.7
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp~pd~ 285 (629)
.+.+.+...++. +|||+|||||.++..++++......++++|+|+.|++.|+++. .++.+.++|++.+|++++
T Consensus 38 ~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDN 115 (233)
T ss_dssp HHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT
T ss_pred HHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCC
Confidence 444444444444 9999999999999999887433346788899999999999762 378999999999999999
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+||+|+|++.+++.+ +....|+|++|+|||||.+++..
T Consensus 116 sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999997776 88999999999999999999864
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=149.66 Aligned_cols=111 Identities=18% Similarity=0.072 Sum_probs=91.2
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC--------CCeEEEEecCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG--------VPAMIGVISSKRLP 281 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg--------~~~~~~v~d~~~Lp 281 (629)
.+.+.+...++ .+|||+|||+|.++..|+++ +.. ..++++|+|++|++.|+++. .++.+.++|...+|
T Consensus 64 ~~~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 64 MAVSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 33444444443 48999999999999988876 332 25678899999999998652 35788999999999
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++||+|+++.+++|+. ++..+++|+.|+|||||++++...
T Consensus 141 ~~~~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCCCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999999997776 899999999999999999999853
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=145.06 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=89.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|||||||-|.++..|++.|.. ++++|+++.+|+.|+.+ +..+.+.+...+.+....++||+|+|..+++|
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~---VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGAS---VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCe---eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 448999999999999999999964 56669999999999854 45666777777777766689999999999999
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHW 329 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~~w 329 (629)
++ +++.+++.+.+++||||.+++++++.++
T Consensus 137 v~-dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 137 VP-DPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred cC-CHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 99 9999999999999999999999887554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-14 Score=142.45 Aligned_cols=114 Identities=21% Similarity=0.302 Sum_probs=94.9
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~s 286 (629)
...+.+.+.++... ..+|||+|||+|.++..|++.+. .++++|+|+.|++.|+++.....+.++|...+|+++++
T Consensus 29 ~~a~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 29 QSADALLAMLPQRK--FTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHHHHhcCccC--CCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCc
Confidence 34455566665432 44899999999999999988765 45677999999999998876667888899999999999
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
||+|+++.++ ||..++..+|.++.|+|||||.++++.+.
T Consensus 104 fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 104 FDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999999988 56668999999999999999999998753
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=146.15 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=104.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+|||||||+|.++..|++.+. .++++|+++++++.|+++. ..+.+.+.+...+++++++||+|+|..++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 45899999999999999998765 4567799999999998652 25778888888888888899999999999
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccc---------cCccCcc-hh--hhhHHHHHHHHHHHhcceeecc
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYW---------RGWERTK-ED--LKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~---------~~w~~~~-e~--l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
+|+. ++..++.++.++|||||.++++.++....... ..|-... +. .....+++..+++..+++.+..
T Consensus 209 eHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 9988 88999999999999999999998755421100 0111111 10 0123456777888888766654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.6e-14 Score=130.98 Aligned_cols=148 Identities=22% Similarity=0.403 Sum_probs=104.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~ 285 (629)
+.+.+.+.++.+. .....+|||+|||+|.++..|++.+. .++++|+++.+++. ........+....+.+++
T Consensus 7 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 7 RAYADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HCHHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhcccc
Confidence 3445566666542 12344899999999999999988877 56677999999988 333444444445556789
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCc--cccccCc--cCc--chhhhhHHHHHHHHHHHhcc
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHW--KKYWRGW--ERT--KEDLKQEQDTIEDIAKRLCW 359 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w--~~~~~~w--~~~--~e~l~~~~~~ie~l~~~l~w 359 (629)
+||+|+|+.+++|.. ++..+|.++.++|||||+++++.+.... ......| ... ........+.+..+++..++
T Consensus 78 ~fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~ 156 (161)
T PF13489_consen 78 SFDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGF 156 (161)
T ss_dssp SEEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTE
T ss_pred chhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCC
Confidence 999999999998888 7999999999999999999999886531 1111111 111 11223345668888888887
Q ss_pred eeec
Q 006834 360 KKLI 363 (629)
Q Consensus 360 ~~v~ 363 (629)
+.+.
T Consensus 157 ~iv~ 160 (161)
T PF13489_consen 157 EIVE 160 (161)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=146.04 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCcc---CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEec
Q 006834 206 DAYIDNINELIPLT---GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVIS 276 (629)
Q Consensus 206 ~~~i~~I~~lL~~~---~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d 276 (629)
...++.+.+.+... ...+.+|||||||+|.++..|+++. ...++++|+|+.|++.|+++ + .++.+.++|
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 33455555555431 1234589999999999999999863 12556779999999988764 3 358899999
Q ss_pred CCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...+|+++++||+|++..+++|+. +...++.++.|+|||||.|++..
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999999998987 78899999999999999999985
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=140.77 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=93.0
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd~ 285 (629)
.+.+.+.+...++. +|||||||+|..+..|++.. ...++++|+|+.+++.|+++. .++.+...|....+++++
T Consensus 41 ~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 41 TTKILSDIELNENS--KVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCC
Confidence 45555666655554 89999999999999988652 235677899999999999864 357888888888899999
Q ss_pred CeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 286 AFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
+||+|++..+++|+.. +...+++++.++|||||+|+++.+
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999988888863 578899999999999999999864
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-12 Score=142.64 Aligned_cols=291 Identities=13% Similarity=0.083 Sum_probs=156.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
..+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +. .+.+..+|... +++.++||+|+|+..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 348999999999999999876422 2567789999999999875 32 46667666532 2345689999996543
Q ss_pred ccccc---------------------C----HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHH
Q 006834 297 IPWYM---------------------Y----DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIE 351 (629)
Q Consensus 297 ~h~~~---------------------d----~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie 351 (629)
..... + ...++.++.++|+|||.+++..... ..+.+.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~------------------q~~~v~ 278 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK------------------QEEAVT 278 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc------------------hHHHHH
Confidence 22110 0 1236778889999999999874210 123355
Q ss_pred HHHHHhcceeecccCceEEEeccCCccccccccccCCCCCCCCCCCCCCccccccccccccCccCCCcccccCCccccCc
Q 006834 352 DIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKDMEACITPLPEVSSSDEVAGGALEKWP 431 (629)
Q Consensus 352 ~l~~~l~w~~v~~~~~~aiwqKp~~~~~c~~~r~~~~~p~lC~~~~~d~~wy~~~~~ci~~~p~~~~~~~~~~~~~~~wp 431 (629)
+++...+|+.+. + .|.++.. .| |- .--..++.. ..+ ...|..+.+=.
T Consensus 279 ~~~~~~g~~~~~------~-~~D~~g~----~R--------~v---------~~~~~~~~r-s~~----rr~g~~~~~~q 325 (506)
T PRK01544 279 QIFLDHGYNIES------V-YKDLQGH----SR--------VI---------LISPINLNR-SYA----RRIGKSLSGVQ 325 (506)
T ss_pred HHHHhcCCCceE------E-EecCCCC----ce--------EE---------EeccccCCc-cee----ccCCCCCCHHH
Confidence 555555553221 1 1222110 00 00 000011110 000 00000000000
Q ss_pred ccccCCCccccCCCCCCcchhhchhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCC
Q 006834 432 ERAFSVPPRISSGSLSGITAEKLREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFH 511 (629)
Q Consensus 432 ~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~ 511 (629)
.+.|...-..|.=-...+-...-..+||+|||.|.|.++++...=- .|++.++
T Consensus 326 --------------------------~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE 378 (506)
T PRK01544 326 --------------------------QNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVE 378 (506)
T ss_pred --------------------------HHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCC-CCEEEEE
Confidence 0011110000000000011223467999999999999999865210 1444444
Q ss_pred CCC----CchHHHHhhcccceeccccccC----CCCC-cccceeeccccccc-------cCCCcCHHHHHHHHhhcccCC
Q 006834 512 SNP----DTLGAIYERGLIGTYQDWCEAF----STYP-RTYDLIHASGVFSI-------YQDRCDITNILLEMDRILRPE 575 (629)
Q Consensus 512 ~~~----~~l~~~~ergli~~~~~~~e~f----~~yp-~t~Dl~H~~~~fs~-------~~~~c~~~~~l~e~dRiLrPg 575 (629)
-.. ..+..+.++||-. +.-.|..+ ..+| .+.|-||. .|.. .+.|=--+..|.++-|+|+||
T Consensus 379 ~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i--~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 379 VYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI--LFPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred eeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE--ECCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 332 2345556677621 22233322 3366 88998887 5652 223333467999999999999
Q ss_pred cEEEE-EeCHHHHHHHHHHHhc
Q 006834 576 GTVIF-RDTVEMLVKIRSITEG 596 (629)
Q Consensus 576 G~~i~-~d~~~~~~~~~~~~~~ 596 (629)
|.+.+ ||..+....+...+..
T Consensus 456 G~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 456 GNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred CEEEEEcCCHHHHHHHHHHHHh
Confidence 99888 5777766665555443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=137.86 Aligned_cols=109 Identities=21% Similarity=0.209 Sum_probs=88.5
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeE
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDM 289 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDl 289 (629)
..+.+.+....+ .+|||+|||+|.++..|+++.. ...++++|+|+.|++.|++++ +.+.++|...++ ++++||+
T Consensus 19 ~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 19 YDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred HHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceE
Confidence 445555554444 4899999999999999998743 235678899999999998875 567778887764 5679999
Q ss_pred EEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 290 AHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 290 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
|+|+.+++|+. ++..+++++.++|||||++++..+
T Consensus 93 v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 93 VVSNAALQWVP-EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EEEehhhhhCC-CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 99999996665 889999999999999999999864
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.9e-13 Score=133.99 Aligned_cols=90 Identities=20% Similarity=0.108 Sum_probs=77.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+.+|||+|||+|.++..|++.. ...++++|+|++|++.|+++. .+.+++...+|+++++||+|+++.+++|+. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-N 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-C
Confidence 3489999999999999999874 125678899999999998864 356788999999999999999999997665 8
Q ss_pred HHHHHHHHHhcccCCc
Q 006834 303 DGLYLLEVDRVLRPGG 318 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG 318 (629)
+..+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 9999999999999953
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.4e-13 Score=135.94 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=90.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCee
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFD 288 (629)
...+...+...++ .+|||+|||+|.++..|++... ...++++|+|+.|++.|+++..++.+...|...+. ++++||
T Consensus 20 ~~~ll~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD 95 (258)
T PRK01683 20 ARDLLARVPLENP--RYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALD 95 (258)
T ss_pred HHHHHhhCCCcCC--CEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCcc
Confidence 4444455544433 4899999999999999998743 23567889999999999998777888888887664 456999
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+|+++.++++. .+...++.++.++|||||.+++..|
T Consensus 96 ~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 96 LIFANASLQWL-PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEEEccChhhC-CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 99999999555 4888999999999999999999864
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=131.60 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=92.9
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLP 281 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp 281 (629)
.+.+.+.+.+...++. +|||+|||+|.++..+++.......++++|+++++++.|+++. .++.+..+|...++
T Consensus 32 ~~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 3345566666655444 8999999999999999886322235778899999999998652 25778888888888
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++||+|++..++++.. +...++.++.++|+|||++++..+
T Consensus 110 ~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8889999999999886655 788999999999999999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.9e-13 Score=136.88 Aligned_cols=101 Identities=18% Similarity=0.044 Sum_probs=84.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC-CCCCCeeEEEecC
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP-YPARAFDMAHCSG 294 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp-~pd~sFDlV~~s~ 294 (629)
.+.+|||+|||+|.++..|++.+. .++++|+|++|++.|+++ + .++.+.+++...++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 345899999999999999999876 456679999999999875 2 24678888877664 5678999999999
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++|+. ++..++.++.++|||||++++...+
T Consensus 121 vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 121 VLEWVA-DPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHHhhC-CHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 997665 8889999999999999999987544
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-12 Score=126.72 Aligned_cols=118 Identities=27% Similarity=0.348 Sum_probs=97.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
..+.+.+.+.+...++. +|||+|||+|.++..+++.......++++|+++.+++.|+++ ..++.+...|...++
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence 44556666766665544 899999999999999988642223577889999999999876 345788888888888
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++++||+|++..+++|+. ++..++.++.++|||||++++..+.
T Consensus 83 ~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCCceEEEEechhhccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8889999999999998877 8899999999999999999998764
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=127.85 Aligned_cols=107 Identities=16% Similarity=0.235 Sum_probs=81.6
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~s 286 (629)
.+.+.+.... +.+|||+|||+|.++.+|++++.. ++++|+|+.+++.++++ +.++.+.+.|....+++ ++
T Consensus 21 ~l~~~~~~~~--~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~ 94 (195)
T TIGR00477 21 AVREAVKTVA--PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-ED 94 (195)
T ss_pred HHHHHhccCC--CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CC
Confidence 3334444333 348999999999999999998764 56669999999987653 45566677776655654 58
Q ss_pred eeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEE
Q 006834 287 FDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 287 FDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis 323 (629)
||+|+|+.+++++.. +...+++++.|+|||||++++.
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999999999977653 3467999999999999996664
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=127.74 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=81.9
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARA 286 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~s 286 (629)
+.+.+...++ .+|||+|||+|.++..|++++. .++++|+|+.+++.|+++ +. ++.+.+.|...++++ ++
T Consensus 22 l~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 22 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHhcccCCC--CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CC
Confidence 3344443333 4899999999999999999876 456669999999998753 32 367777787777664 67
Q ss_pred eeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEE
Q 006834 287 FDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 287 FDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis 323 (629)
||+|+|+.+++++.. +...++.++.++|||||++++.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999866553 3568999999999999997654
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=133.13 Aligned_cols=101 Identities=15% Similarity=0.060 Sum_probs=82.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC-cEeEEEeecCcHHHHHHHHHc------CCCeEEEEecCCCCCCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI-LTMSFARRDTHEAQVQFALER------GVPAMIGVISSKRLPYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~-~~v~i~gvDiS~~~i~~A~er------g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~ 295 (629)
..+|||+|||+|.++..++++.. ....++++|+|+.|++.|+++ ..++.+.++|...++++ .+|+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 44899999999999999988631 234678889999999999875 23578888888888765 4899999999
Q ss_pred cccccc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
++|+.. +...++.++.|+|+|||.|+++.+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 977753 246799999999999999999854
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=116.53 Aligned_cols=98 Identities=21% Similarity=0.295 Sum_probs=78.0
Q ss_pred CeEEEeCCCCchHHHHHHH--cCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecC-CCCCCCCCCeeEEEecC
Q 006834 224 RTAVDTGCGVASWGAYLLK--RDILTMSFARRDTHEAQVQFALERG------VPAMIGVISS-KRLPYPARAFDMAHCSG 294 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~--~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~-~~Lp~pd~sFDlV~~s~ 294 (629)
.+|||+|||+|.++..+++ .+. .++++|+|+++++.|+++. .++.+.+.|. ..... .+.||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 4899999999999999999 455 4567799999999999763 5789999888 33333 45699999988
Q ss_pred -cccccc--cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 -CLIPWY--MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 -~L~h~~--~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++. ++...+++++.+.|+|||+|++..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 554343 2456799999999999999999853
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=135.90 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=81.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCc--EeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDIL--TMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~--~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
..+|||+|||+|.++..|++.... ...++|+|+|+.+++.|+++..++.+.++|...+|+++++||+|++....
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~---- 161 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP---- 161 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC----
Confidence 347999999999999999876432 12467889999999999998888899999999999999999999986531
Q ss_pred cCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 301 MYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 301 ~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
..+.++.|+|||||+|++..|..
T Consensus 162 ----~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 162 ----CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ----CCHHHHHhhccCCCEEEEEeCCC
Confidence 23689999999999999997654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=129.01 Aligned_cols=117 Identities=23% Similarity=0.206 Sum_probs=93.6
Q ss_pred HHHHHhhcCccC-CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC-CeEEEEecCCCCCCCCCC
Q 006834 209 IDNINELIPLTG-GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV-PAMIGVISSKRLPYPARA 286 (629)
Q Consensus 209 i~~I~~lL~~~~-g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~-~~~~~v~d~~~Lp~pd~s 286 (629)
...+.+.+.... ..+.+|||+|||+|.++..+++.+... .++++|+++.+++.++++.. ++.+...|...+++++++
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSS 98 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCc
Confidence 334444444321 234589999999999999999987533 57888999999999988743 567888898888888899
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
||+|++..+++|.. ++..++.++.++|+|||.+++..+..
T Consensus 99 fD~vi~~~~l~~~~-~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 99 FDLIVSNLALQWCD-DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred eeEEEEhhhhhhcc-CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999999996554 78899999999999999999987533
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=122.83 Aligned_cols=100 Identities=26% Similarity=0.378 Sum_probs=83.7
Q ss_pred CCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP--YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp--~pd~sFDlV~~s~ 294 (629)
..+|||+|||+|.++..|++ .+. ...++++|+|++|++.|+++ +. ++.|.+.|...++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 44899999999999999995 333 23578889999999999974 33 5899999998877 66 8999999999
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++|.. ++..+++++.++|++||.+++..+
T Consensus 82 ~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 82 VLHHFP-DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp TGGGTS-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhcc-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 996655 788999999999999999999864
|
... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=141.37 Aligned_cols=110 Identities=20% Similarity=0.335 Sum_probs=90.4
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~s 286 (629)
.+.+.+... .+.+|||||||+|.++..|++.. ...++++|+|+.+++.|+++. .++.+.+.|...+++++++
T Consensus 257 ~l~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 257 EFVDKLDLK--PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHhcCCC--CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 344444433 34489999999999999998763 225677799999999998752 3578888998888888899
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
||+|+|..+++|+. ++..++.++.|+|||||.+++..+
T Consensus 333 fD~I~s~~~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 333 FDVIYSRDTILHIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred EEEEEECCcccccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999998887 889999999999999999999864
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=135.97 Aligned_cols=110 Identities=22% Similarity=0.213 Sum_probs=89.3
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH--c----CCCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE--R----GVPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e--r----g~~~~~~v~d~~~Lp~ 282 (629)
.+.+...++...+ ++|||||||+|.++..+++.+.. .++|+|+|+.++..++. + ..++.+..++...+|+
T Consensus 111 ~~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 111 WDRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 3455555554333 49999999999999999998764 35777999998875432 2 2368888888888988
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+++||+|+|..+++|.. ++..+|++++++|+|||.+++..
T Consensus 187 -~~~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred -cCCcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 78999999999998876 88999999999999999999974
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-13 Score=117.61 Aligned_cols=93 Identities=26% Similarity=0.356 Sum_probs=75.1
Q ss_pred EEEeCCCCchHHHHHHHcCCc--EeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCCeeEEEecCc-ccc
Q 006834 226 AVDTGCGVASWGAYLLKRDIL--TMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARAFDMAHCSGC-LIP 298 (629)
Q Consensus 226 VLDIGCGtG~~a~~La~~g~~--~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~-L~h 298 (629)
|||+|||+|..+..+++.... ...++++|+|++|++.++++. .++.+.+.|...+++.+++||+|+|+.. ++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999987511 146788899999999999764 6899999999999988899999999655 877
Q ss_pred cccC-HHHHHHHHHhcccCCc
Q 006834 299 WYMY-DGLYLLEVDRVLRPGG 318 (629)
Q Consensus 299 ~~~d-~~~~L~el~RvLKPGG 318 (629)
+.++ ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 6533 4679999999999998
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=127.47 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=94.3
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-----EeEEEeecCcHHHHHHHHHcC--------CCeEEEE
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-----TMSFARRDTHEAQVQFALERG--------VPAMIGV 274 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-----~v~i~gvDiS~~~i~~A~erg--------~~~~~~v 274 (629)
+.+.+...+....+ .++||++||||.++..+++.-.. ...++..|+++.|+..+++|. ..+.|..
T Consensus 88 WKd~~v~~L~p~~~--m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKG--MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHhhhccCCCCC--CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 44555555555444 49999999999999999886322 245677899999999998763 2378899
Q ss_pred ecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 275 ISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 275 ~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+|++.|||++++||+...++.+..+. ++++.|+|++|||||||+|.+..
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999999999998888 89999999999999999998763
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=132.58 Aligned_cols=134 Identities=21% Similarity=0.217 Sum_probs=99.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
..+|||+|||+|.++..+++... ...++++|.|++|++.|+++. .++.+..+|...+++++++||+|+++.+++++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 34899999999999988887532 135678899999999998863 357788889988999999999999999997777
Q ss_pred cCHHHHHHHHHhcccCCcEEEEEeCC--CCcccccc--CccCcchhhhhHHHHHHHHHHHhcceeec
Q 006834 301 MYDGLYLLEVDRVLRPGGYWILSGPP--IHWKKYWR--GWERTKEDLKQEQDTIEDIAKRLCWKKLI 363 (629)
Q Consensus 301 ~d~~~~L~el~RvLKPGG~liis~P~--~~w~~~~~--~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 363 (629)
++..+|+++.|+|||||.+++..+. ..|..+.. .|. .....+++.++++..+|+.+.
T Consensus 193 -d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~-----~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 193 -DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWM-----LFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred -CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhc-----cCCCHHHHHHHHHHCCCeEEE
Confidence 7888999999999999999887642 22322110 010 011234566777777876653
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=126.15 Aligned_cols=150 Identities=19% Similarity=0.236 Sum_probs=115.7
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEE
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMA 290 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV 290 (629)
.+...++... .++|.|+|||+|..+..|+++-+.. .|+|+|.|++|++.|+++.+++.|..+|...+. ++..+|++
T Consensus 21 dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~RwP~A-~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dll 96 (257)
T COG4106 21 DLLARVPLER--PRRVVDLGCGPGNSTELLARRWPDA-VITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLL 96 (257)
T ss_pred HHHhhCCccc--cceeeecCCCCCHHHHHHHHhCCCC-eEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchh
Confidence 3344444433 4589999999999999999997654 688999999999999999999999999988775 56789999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeecccCceEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAI 370 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~~~~ai 370 (629)
+++.+| ||.++-..+|..+...|.|||.|.+..|.. +. ......|++.++..-|.........
T Consensus 97 faNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN-~d-------------epsH~~mr~~A~~~p~~~~l~~~~~-- 159 (257)
T COG4106 97 FANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN-LD-------------EPSHRLMRETADEAPFAQELGGRGL-- 159 (257)
T ss_pred hhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc-cC-------------chhHHHHHHHHhcCchhhhhCcccc--
Confidence 999999 888788899999999999999999987732 11 1124567888887777654443222
Q ss_pred EeccCCccccc
Q 006834 371 WQKPINHIDCN 381 (629)
Q Consensus 371 wqKp~~~~~c~ 381 (629)
.++++-...-|
T Consensus 160 ~r~~v~s~a~Y 170 (257)
T COG4106 160 TRAPLPSPAAY 170 (257)
T ss_pred ccCCCCCHHHH
Confidence 46776554444
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.8e-12 Score=132.50 Aligned_cols=111 Identities=20% Similarity=0.145 Sum_probs=86.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH--c----CCCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE--R----GVPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e--r----g~~~~~~v~d~~~Lp~ 282 (629)
.+.+...+....+ ++|||||||+|.++..++..+.. .++|+|+|+.|+..++. + ...+.+..++...++.
T Consensus 110 ~~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 110 WDRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence 3445555544444 49999999999999999988764 45777999999876432 1 2346677777777775
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
. .+||+|+|+.+++|+. ++..+|.+++|+|||||.|++...
T Consensus 186 ~-~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 186 L-YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred C-CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4 4899999999998986 889999999999999999999753
|
Known examples to date are restricted to the proteobacteria. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=126.09 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=115.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
...++||||+|.|..+..|+...-. +++.|.|..|....+++|.. +.+...+.-.+.+||+|.|.++|.. ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~kg~~----vl~~~~w~~~~~~fDvIscLNvLDR-c~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSKKGFT----VLDIDDWQQTDFKFDVISCLNVLDR-CD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHhCCCe----EEehhhhhccCCceEEEeehhhhhc-cC
Confidence 3458999999999999999887553 46669999999999999854 3334444434578999999999944 44
Q ss_pred CHHHHHHHHHhcccCCcEEEEEe--CCCCcccccc-CccCcchhhhhHHHHHHHHHHHhcceeecccCceEEEeccCCcc
Q 006834 302 YDGLYLLEVDRVLRPGGYWILSG--PPIHWKKYWR-GWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHI 378 (629)
Q Consensus 302 d~~~~L~el~RvLKPGG~liis~--P~~~w~~~~~-~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~~~~aiwqKp~~~~ 378 (629)
+|..+|+++++.|+|+|.++++. |-..+.+... .+.++.+.+......+|+.+.++- .+.++..+. .
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~--~v~~p~GF~--------v 235 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV--NVFEPAGFE--------V 235 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH--HHHHhcCCE--------E
Confidence 79999999999999999999965 6555666554 577777777666677777777775 344443332 1
Q ss_pred ccccccccCCCCCCCCCCCCCCccc
Q 006834 379 DCNKSKVVYKTPQICGPDNPDTAWY 403 (629)
Q Consensus 379 ~c~~~r~~~~~p~lC~~~~~d~~wy 403 (629)
.-++ +.|++|++|-..++++
T Consensus 236 ~~~t-----r~PYLcEGD~~~~~Y~ 255 (265)
T PF05219_consen 236 ERWT-----RLPYLCEGDLYQSYYV 255 (265)
T ss_pred EEEe-----ccCccccCcccCceEE
Confidence 2222 2399999876555444
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-12 Score=122.46 Aligned_cols=139 Identities=26% Similarity=0.314 Sum_probs=105.4
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCC-CC-CCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSK-RL-PYPARA 286 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~-~L-p~pd~s 286 (629)
+.|.++++. + .+|||+|||.|.+..+|.+. ++.+ .|+|++++.+..+.++|.++ .++|.. .| .|++++
T Consensus 5 ~~I~~~I~p--g--srVLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 5 QIIAEWIEP--G--SRVLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQS 75 (193)
T ss_pred HHHHHHcCC--C--CEEEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCC
Confidence 456666654 3 49999999999999999984 4544 56699999999999999764 445543 34 489999
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC-Ccccccc---------------CccCcchhhhhHHHHH
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI-HWKKYWR---------------GWERTKEDLKQEQDTI 350 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~-~w~~~~~---------------~w~~~~e~l~~~~~~i 350 (629)
||.|+++.+|.+.. +|..+|.|+.|+ |...+++.|+. .|..+.. .|..++.-..-..+.+
T Consensus 76 FD~VIlsqtLQ~~~-~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 76 FDYVILSQTLQAVR-RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred ccEEehHhHHHhHh-HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 99999999998887 899999999777 67888898876 4433322 4766666666666778
Q ss_pred HHHHHHhccee
Q 006834 351 EDIAKRLCWKK 361 (629)
Q Consensus 351 e~l~~~l~w~~ 361 (629)
+++.+.++++-
T Consensus 152 e~lc~~~~i~I 162 (193)
T PF07021_consen 152 EDLCRELGIRI 162 (193)
T ss_pred HHHHHHCCCEE
Confidence 88888776543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.6e-12 Score=128.28 Aligned_cols=117 Identities=15% Similarity=0.040 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALERG------VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~ 278 (629)
+...+.+..++........+|||+|||+|..+..|++.. .....++++|+|+.|++.|+++. .++.+.+++..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~ 119 (247)
T PRK15451 40 SNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR 119 (247)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChh
Confidence 344444443332222234589999999999998888731 12336778899999999998762 25788888888
Q ss_pred CCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.++++ .+|+|+++.+++|+..+ ...++.++.++|||||.|+++.
T Consensus 120 ~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 120 DIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 77764 49999999999777633 3579999999999999999985
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-12 Score=130.12 Aligned_cols=123 Identities=24% Similarity=0.387 Sum_probs=87.3
Q ss_pred ecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC
Q 006834 194 FPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV 268 (629)
Q Consensus 194 Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~ 268 (629)
|+.+...........++.+.+.+...+|. +|||||||.|.++.+++++ |+ .++++.+|+++.+.|+++ |.
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl 110 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGL 110 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCC
Confidence 33333334444555677888888887777 9999999999999999998 65 456669999999999865 43
Q ss_pred --CeEEEEecCCCCCCCCCCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEe
Q 006834 269 --PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 --~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+.+...|...++. +||.|++..+++|+.. +...+++++.++|||||.+++..
T Consensus 111 ~~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 111 EDRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CCceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 47777777766553 8999999999999963 45789999999999999999853
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=128.00 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=79.2
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+|||+|||+|.++.+|++++. .++++|+|+.+++.++++ +.++.+...|....++ +++||+|+++.++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 3899999999999999999876 456669999999988754 5567777777766555 6789999999999776
Q ss_pred cc-CHHHHHHHHHhcccCCcEEEEEe
Q 006834 300 YM-YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 300 ~~-d~~~~L~el~RvLKPGG~liis~ 324 (629)
.. +...++.++.++|+|||++++..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 53 24679999999999999977754
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=127.73 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=82.4
Q ss_pred CCCeEEEeCCCCch----HHHHHHHcCCc----EeEEEeecCcHHHHHHHHHcC--------------------------
Q 006834 222 NIRTAVDTGCGVAS----WGAYLLKRDIL----TMSFARRDTHEAQVQFALERG-------------------------- 267 (629)
Q Consensus 222 ~~~~VLDIGCGtG~----~a~~La~~g~~----~v~i~gvDiS~~~i~~A~erg-------------------------- 267 (629)
.+.+|+|+|||+|. ++..|++.+.. ...++++|+|+.|++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34589999999995 55566665331 457889999999999998641
Q ss_pred ------CCeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 268 ------VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 268 ------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
..+.|.+.|....+++.++||+|+|.++++|+... ...++.++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 14678888888888778999999999999888632 4579999999999999999963
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-12 Score=114.99 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=59.1
Q ss_pred EEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCC-C-CCCCeeEEEecCccccc
Q 006834 227 VDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLP-Y-PARAFDMAHCSGCLIPW 299 (629)
Q Consensus 227 LDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp-~-pd~sFDlV~~s~~L~h~ 299 (629)
||||||+|.++..+++.. ....++++|+|+.|++.|+++. .............. . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999986 3557889999999997776541 22233333333222 1 23599999999999888
Q ss_pred ccCHHHHHHHHHhcccCCcEE
Q 006834 300 YMYDGLYLLEVDRVLRPGGYW 320 (629)
Q Consensus 300 ~~d~~~~L~el~RvLKPGG~l 320 (629)
++...+++.+.++|||||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 58899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=126.04 Aligned_cols=102 Identities=20% Similarity=0.107 Sum_probs=83.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|..+..+++.......++++|+++.+++.|+++ + .++.+...+...+++++++||+|+++.+++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 34999999999998877766422222467789999999999875 2 357788889888999889999999998886
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+.. +...++.++.|+|||||.|+++..
T Consensus 158 ~~~-d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 158 LSP-DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 654 778899999999999999999753
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=120.53 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=81.8
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+|||||||+|.++..+++.... ..++++|+|+++++.|+++ + ..+.+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 7999999999999999887532 3567889999999999875 2 2467777787666664 58999999999988
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+. +...++.++.++|||||++++..+
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76 788999999999999999999875
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-11 Score=119.75 Aligned_cols=112 Identities=16% Similarity=0.032 Sum_probs=86.4
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCe
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAF 287 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sF 287 (629)
..+.+.+.+...+ .+.+|||+|||+|.++..|++... ...++|+|+|++|++.|+++..++.+.+++... |+++++|
T Consensus 30 ~~~~~~~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sf 106 (204)
T TIGR03587 30 KLAMFARALNRLP-KIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFF 106 (204)
T ss_pred HHHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCE
Confidence 3444444443222 244899999999999999988632 235788899999999999876667788888777 8889999
Q ss_pred eEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 288 DMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 288 DlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
|+|+++.+++|+.++ ...+++++.|++ ++++++..
T Consensus 107 D~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 107 DLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 999999999998643 467999999998 56777764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=123.82 Aligned_cols=101 Identities=19% Similarity=0.166 Sum_probs=80.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-------CC----eEEEEecCCCCCCCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-------VP----AMIGVISSKRLPYPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-------~~----~~~~v~d~~~Lp~pd~sFDlV~ 291 (629)
+++|||+|||.|.++..|++.|..+ +|+|+++.|++.|++.. .+ +.+...+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V---~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQV---TGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCee---EeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 4689999999999999999999754 56699999999999762 11 22333333333 24599999
Q ss_pred ecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCcc
Q 006834 292 CSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWK 330 (629)
Q Consensus 292 ~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~ 330 (629)
|+.+++|.. +++.++..+.+.|||||.+++++-+..+.
T Consensus 164 csevleHV~-dp~~~l~~l~~~lkP~G~lfittinrt~l 201 (282)
T KOG1270|consen 164 CSEVLEHVK-DPQEFLNCLSALLKPNGRLFITTINRTIL 201 (282)
T ss_pred eHHHHHHHh-CHHHHHHHHHHHhCCCCceEeeehhhhHH
Confidence 999999998 89999999999999999999997544443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-11 Score=116.24 Aligned_cols=107 Identities=19% Similarity=0.309 Sum_probs=80.8
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH----HcCCCeEEEEecCCCCCCCCCCe
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL----ERGVPAMIGVISSKRLPYPARAF 287 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~----erg~~~~~~v~d~~~Lp~pd~sF 287 (629)
+.+.++..+ +.++||+|||.|+.+.+|+++|..+.+ +|.|+..++.+. +++.++...+.|.....++ +.|
T Consensus 22 v~~a~~~~~--~g~~LDlgcG~GRNalyLA~~G~~VtA---vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLLK--PGKALDLGCGEGRNALYLASQGFDVTA---VDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS---SSEEEEES-TTSHHHHHHHHTT-EEEE---EESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhcC--CCcEEEcCCCCcHHHHHHHHCCCeEEE---EECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCc
Confidence 444444433 348999999999999999999996554 499999887765 4577888889998877765 689
Q ss_pred eEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 288 DMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 288 DlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
|+|++..+++++..+ ...++..+...++|||++++.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 999998888777755 4568999999999999999864
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-11 Score=122.87 Aligned_cols=123 Identities=23% Similarity=0.328 Sum_probs=97.1
Q ss_pred ecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC
Q 006834 194 FPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV 268 (629)
Q Consensus 194 Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~ 268 (629)
|+.............++.+.+.+.+.+|. +|||||||.|.++.+++++ ++. ++|+++|++|.+.++++ |.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~---V~GvTlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVT---VVGVTLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCE---EEEeeCCHHHHHHHHHHHHHcCC
Confidence 44444445455566688889999988888 9999999999999999998 454 45669999999999874 43
Q ss_pred --CeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 269 --PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 --~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
++.+...|...+. +.||-|++..+++|+... -..++..++++|+|||.+++-+
T Consensus 121 ~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 121 EDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred CcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 3566555554443 459999999999999854 5789999999999999999964
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=115.15 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=92.4
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPA 284 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd 284 (629)
+.+.+.+.+...+ +.+|||+|||+|.++..+++.......++++|+++.+++.++++. .++.+...+...+++++
T Consensus 27 ~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 27 WRRRAVKLIGVFK--GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHHHhccCC--CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 3444555554433 348999999999999999988653235778899999999998864 35778888888888878
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++||+|+++.++++.. ++..+++++.++|+|||.+++...
T Consensus 105 ~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8999999999986665 788999999999999999998753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=117.46 Aligned_cols=98 Identities=17% Similarity=0.049 Sum_probs=79.6
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH-cC----------------CCeEEEEecCCCCCCC-CC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE-RG----------------VPAMIGVISSKRLPYP-AR 285 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e-rg----------------~~~~~~v~d~~~Lp~p-d~ 285 (629)
.+|||+|||.|..+.+|+++|..+ +++|+|+.+++.+.+ .+ ..+.+.++|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V---~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRV---LGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeE---EEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 489999999999999999999865 455999999998643 22 3477788888877643 46
Q ss_pred CeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 286 AFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.||.|+...+++|++.+ ...++..+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 79999998888888755 3569999999999999877654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-11 Score=117.22 Aligned_cols=98 Identities=23% Similarity=0.286 Sum_probs=80.2
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-----CCCeE-EEEecCCCCC-CCCCCeeEEEecCccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-----GVPAM-IGVISSKRLP-YPARAFDMAHCSGCLI 297 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-----g~~~~-~~v~d~~~Lp-~pd~sFDlV~~s~~L~ 297 (629)
.|||||||||..-.++--. ...+++++|.++.|-++|.++ ..++. |++++.+.+| ++++|+|.|+|..+|.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 5899999999765444322 234678889999999988753 34455 8899999998 8899999999999996
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
... ++.+.|.++.|+|||||.+++..+
T Consensus 157 Sve-~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 157 SVE-DPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred ccC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 554 899999999999999999999754
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=115.93 Aligned_cols=114 Identities=21% Similarity=0.181 Sum_probs=91.1
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~ 282 (629)
...+...+...++ .+|||+|||+|.++..+++.+.....++++|+++.+++.++++. .++.+...|...+++
T Consensus 40 ~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 40 RRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHhCCCCC--CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 4444444444333 48999999999999999987642346788899999999998762 357788888888887
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+.++||+|+++.+++++. +...++.++.++|+|||.+++...
T Consensus 118 ~~~~~D~I~~~~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCccEEEEecccccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 778999999999997766 788999999999999999988653
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-11 Score=119.59 Aligned_cols=99 Identities=20% Similarity=0.163 Sum_probs=76.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+++||+|||.|.++..|+.+.- .++++|+|+.+++.|++|- .++.+.+.+.... .|.++||+|+++.+++.+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred cceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 45899999999999999999843 5677899999999999883 4688888887654 578999999999999777
Q ss_pred cc--CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 300 YM--YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 300 ~~--d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+ +...++..+...|+|||.|++...
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 53 235689999999999999999753
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-10 Score=111.65 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=88.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|.++..++.... ...++++|.++.|++.|+++ +. ++.+..++...++. .++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 45899999999999999887543 23677889999999988864 33 48888888888776 779999998642
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
.+...++.++.++|||||++++..+.. ....++++++.++|...
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEe
Confidence 256789999999999999999985321 12347778888888643
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.3e-11 Score=133.41 Aligned_cols=102 Identities=19% Similarity=0.126 Sum_probs=83.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC--CCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP--YPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~L 296 (629)
+.+|||+|||+|.++..+++... ...++++|+|+.|++.|+++ +.++.+.++|...++ +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 34899999999999988887643 34678889999999999875 345677788888887 788999999999988
Q ss_pred cccc------------cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWY------------MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~------------~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++. .+...+|+++.|+|||||.+++...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7663 1346799999999999999999753
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=125.86 Aligned_cols=112 Identities=25% Similarity=0.345 Sum_probs=87.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~ 282 (629)
....+.+.+.+...++. +|||||||+|.++..++++ +. .++++|+|++|++.|+++. ..+.+...|...+
T Consensus 153 ~~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-- 225 (383)
T PRK11705 153 EAKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-- 225 (383)
T ss_pred HHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc--
Confidence 33455566666655554 9999999999999999876 44 5677799999999999874 3456666665544
Q ss_pred CCCCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++||.|++..+++|... +...++.++.++|||||++++...
T Consensus 226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 478999999999988753 356899999999999999999753
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=101.43 Aligned_cols=111 Identities=17% Similarity=0.063 Sum_probs=81.5
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC-C
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR-L 280 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~-L 280 (629)
.....+.+.+....+. +|||+|||+|.++..++++... ..++++|+++.+++.++++ + .++.+...+... +
T Consensus 6 ~~~~~~~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 6 EVRALTLSKLRLRPGD--VLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence 3344455555544443 8999999999999999987543 3578889999999998753 2 346666666543 3
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...++||+|++..... ....+++++.++|+|||+|++..
T Consensus 83 ~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 33346899999876542 23579999999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-10 Score=120.36 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=92.2
Q ss_pred HHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----------CCeEEEE
Q 006834 206 DAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----------VPAMIGV 274 (629)
Q Consensus 206 ~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----------~~~~~~v 274 (629)
...++.+.+.+... ...+.+|||+|||+|.++..|++++. .++++|+|+.|++.|+++. ..+.|.+
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~ 203 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA 203 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEE
Confidence 34455555555432 12245899999999999999999876 4566699999999998763 2356666
Q ss_pred ecCCCCCCCCCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEeCCCCcccc--------ccCccCcchhhhh
Q 006834 275 ISSKRLPYPARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGPPIHWKKY--------WRGWERTKEDLKQ 345 (629)
Q Consensus 275 ~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~P~~~w~~~--------~~~w~~~~e~l~~ 345 (629)
.|...+ +++||+|+|..+++|+..+. ..++..+.+ +.+||.++ +..+..+... +.+.......+..
T Consensus 204 ~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI-s~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~ 278 (315)
T PLN02585 204 NDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII-SFAPKTLYYDILKRIGELFPGPSKATRAYLH 278 (315)
T ss_pred cchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE-EeCCcchHHHHHHHHHhhcCCCCcCceeeeC
Confidence 665433 57899999999998987443 345666664 45666544 4333322111 1111111111222
Q ss_pred HHHHHHHHHHHhcceee
Q 006834 346 EQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 346 ~~~~ie~l~~~l~w~~v 362 (629)
..+.++++.+..+|+..
T Consensus 279 s~eel~~lL~~AGf~v~ 295 (315)
T PLN02585 279 AEADVERALKKAGWKVA 295 (315)
T ss_pred CHHHHHHHHHHCCCEEE
Confidence 34567777777777643
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=115.46 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=80.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecC-CCCC--CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISS-KRLP--YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~-~~Lp--~pd~sFDlV~~s~ 294 (629)
..+|||+|||+|.++..|++.... ..++++|+|+.+++.|+++ + .++.+.++|. ..++ +++++||+|++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 348999999999999999887532 3578889999999999864 2 3588888888 6666 7788999999876
Q ss_pred ccccccc--------CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYM--------YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~--------d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. +|.. ....+++++.++|||||+|++..+
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 54 3421 135789999999999999999854
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-10 Score=114.76 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=101.3
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~ 278 (629)
...+.+.+.+.+........+|||+|||+|.++..+++.+. .++++|+++++++.|+++. .++.+.+.|..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34445556666652122345899999999999999998765 4577799999999998752 25778888877
Q ss_pred CCCCCCCCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeCCCCccccc----cCccC---cchhhhhHHHHH
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGPPIHWKKYW----RGWER---TKEDLKQEQDTI 350 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P~~~w~~~~----~~w~~---~~e~l~~~~~~i 350 (629)
.++ ++||+|++..+++|+.. +...++.++.+++++++++.+. |...+.... ..|.. .........+.+
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA-PKTAWLAFLKMIGELFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC-CCchHHHHHHHHHhhCcCcccccceEEecHHHH
Confidence 765 78999999999888753 3567899999999877666553 322211100 00111 111112234567
Q ss_pred HHHHHHhcceeecc
Q 006834 351 EDIAKRLCWKKLIE 364 (629)
Q Consensus 351 e~l~~~l~w~~v~~ 364 (629)
+++++..+|+.+..
T Consensus 191 ~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 191 ERALGELGWKIVRE 204 (219)
T ss_pred HHHHHHcCceeeee
Confidence 77778877766543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-10 Score=111.83 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~ 279 (629)
......+.+.+...++. +|||+|||+|..+..|++.......++++|+++++++.|+++ +. .+.+..+|...
T Consensus 58 p~~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 58 PHMVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 44456666766655444 899999999999998887532112467779999999998864 32 36788888766
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
......+||+|++...+.++. .++.++|+|||.|++..
T Consensus 136 ~~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 136 GLEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 544567999999988875543 47889999999998864
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=114.07 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=77.1
Q ss_pred CCeEEEeCCCCchHHHHHHHc----CCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKR----DILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~----g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+|||+|||+|.++..|++. +. ...++++|+|+.|++.|+++. .++.+.+.+...++.++++||+|+|+.++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 458999999999998888753 33 236788899999999998873 34666667777777778899999999999
Q ss_pred cccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 297 IPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 297 ~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
+|+.+. ...+++++.|+++ |.+++.
T Consensus 140 hh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 888733 2479999999998 455554
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=105.43 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCCCCc-hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC-eEE
Q 006834 199 TTFPNG-ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP-AMI 272 (629)
Q Consensus 199 t~f~~g-a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~-~~~ 272 (629)
.+|..+ .+.-...|.+.+.... ..+|||+|||+|.++..+++++... .++++|+++.+++.++++ +.. +.+
T Consensus 9 gvFs~~~~d~~t~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~ 85 (170)
T PF05175_consen 9 GVFSPPRLDAGTRLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEV 85 (170)
T ss_dssp TSTTTTSHHHHHHHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEE
T ss_pred CeeCCCCCCHHHHHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccc
Confidence 345422 2333445555555443 3389999999999999999987753 477889999999999864 444 777
Q ss_pred EEecCCCCCCCCCCeeEEEecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 273 GVISSKRLPYPARAFDMAHCSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 273 ~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
...|... +.++++||+|+|+.-++.-..+ ...++.+..+.|+|||.|++..
T Consensus 86 ~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 86 VQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp EESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 7766543 2347899999999876333321 3568999999999999998874
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=117.67 Aligned_cols=110 Identities=22% Similarity=0.217 Sum_probs=83.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH--Hc--CCC--eEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL--ER--GVP--AMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~--er--g~~--~~~~v~d~~~Lp~ 282 (629)
-+.+...++... +++|||||||+|.++..|+.+|+. .+.|+|.+.-.....+ ++ +.. +.+.-...+.+|.
T Consensus 104 W~rl~p~l~~L~--gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 104 WDRLLPHLPDLK--GKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHHHhhhCCcC--CCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 345555554433 459999999999999999999976 3466698876554432 22 222 2333246778887
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.++||+|+|..+|.|.. +|-..|.+++..|+|||.+++.+
T Consensus 180 -~~~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred -cCCcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEE
Confidence 78999999999999988 89999999999999999999865
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-10 Score=108.04 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=77.0
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+|||+|||+|.++..+++.+. .++++|+++.+++.++++ +..+.+...|....+ .++||+|+++..+++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 3799999999999999999876 467779999999999874 345667777765543 4589999999887655
Q ss_pred ccC--------------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 300 YMY--------------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 300 ~~d--------------------~~~~L~el~RvLKPGG~liis~P 325 (629)
... ...++.++.++|+|||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 421 23579999999999999999853
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-09 Score=115.19 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC--eEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP--AMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~--~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ +.. +.+...+ ..+..+++||+|+++...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILA 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCH
Confidence 358999999999999998887653 567789999999999875 222 2333322 233446799999997643
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ....++.++.++|||||++++++.
T Consensus 236 ~----~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 E----VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred H----HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2 235789999999999999999863
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=118.38 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=82.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC----CeEEEEecCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV----PAMIGVISSKRL 280 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~----~~~~~v~d~~~L 280 (629)
.+.+.+.++...+ .+|||+|||+|.++..++++++. ..++++|+|+.+++.|+++ +. .+.+...|...
T Consensus 217 trllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~- 292 (378)
T PRK15001 217 ARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS- 292 (378)
T ss_pred HHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-
Confidence 4455566654333 38999999999999999998653 3678889999999999864 21 35666655432
Q ss_pred CCCCCCeeEEEecCcccccc--cC--HHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWY--MY--DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~--~d--~~~~L~el~RvLKPGG~liis~ 324 (629)
.++.++||+|+|+..++.-. .+ ...++.++.++|+|||.|+++.
T Consensus 293 ~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 293 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 23456899999998774322 11 2468999999999999999995
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=110.83 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=87.9
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC-CC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP-YP 283 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp-~p 283 (629)
++.+...+...+ ..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +..+.+...+...++ ..
T Consensus 37 ~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGLF--GKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCCC--CCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc
Confidence 455555554333 34899999999999999998865 467779999999998865 345666666665554 34
Q ss_pred CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 284 ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++||+|+++.+++|.. ++..+|.++.++|+|||.++++.+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 57999999999997776 7888999999999999999998754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=110.55 Aligned_cols=97 Identities=16% Similarity=0.061 Sum_probs=77.9
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH-HcC----------------CCeEEEEecCCCCCCC-CC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL-ERG----------------VPAMIGVISSKRLPYP-AR 285 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~-erg----------------~~~~~~v~d~~~Lp~p-d~ 285 (629)
.+|||+|||.|..+.+|+++|..+ +++|+|+.+++.+. +++ ..+.+.++|...++.. ..
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V---~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEV---LGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeE---EEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 489999999999999999999865 45599999999864 333 2466778888777533 36
Q ss_pred CeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 286 AFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
.||+|+...+++|++.+ ...++..+.++|+|||++++.
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 89999998888888755 467999999999999975553
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=104.85 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=74.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|.++..++..... ..++++|.++.|++.++++ +. ++.+..+|...++ ..++||+|++.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 448999999999999998876532 3467889999999887643 33 5788888887764 357999999865 32
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...++..+.++|+|||.+++..
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 44568899999999999999873
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=116.51 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=83.4
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPY 282 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~ 282 (629)
.-.+.+.+.++.... .+|||+|||+|.++..+++++.. ..++++|+++.+++.|+++ +....+...|... .
T Consensus 183 ~gt~lLl~~l~~~~~--g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~ 257 (342)
T PRK09489 183 VGSQLLLSTLTPHTK--GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--D 257 (342)
T ss_pred HHHHHHHHhccccCC--CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--c
Confidence 334455555543322 37999999999999999988653 3577889999999999853 4455565555433 2
Q ss_pred CCCCeeEEEecCccccccc----CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~P 325 (629)
.++.||+|+|+..+|.... ....++.++.+.|||||.|+++.+
T Consensus 258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3578999999998854321 236799999999999999999864
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=108.84 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=83.7
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~ 279 (629)
+......+.+.+...++. +|||||||+|.++..|++.......++++|+++++++.|+++ + .++.+..+|...
T Consensus 61 ~p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred cHHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 355566677777665555 999999999999998887632223567779999999999875 3 257888888776
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...+.+.||+|++.....+. ...+.+.|||||.|++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 65567899999997765433 246677899999999863
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=108.07 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
......+.+.+...++. +|||+|||+|.++..|++.......++++|+++++++.|+++ + .++.+..+|....
T Consensus 63 p~~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 63 PHMVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence 34456666777665555 999999999999999998754322467779999999999865 3 3577888887655
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
......||+|++.....+. ...+.+.|+|||++++..
T Consensus 141 ~~~~~~fD~Ii~~~~~~~~-------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 WEPLAPYDRIYVTAAGPKI-------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCCCEEEEcCCcccc-------cHHHHHhcCcCcEEEEEE
Confidence 4445689999987655333 356788999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.9e-10 Score=109.36 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=78.9
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCC---CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLP---YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp---~pd~sFDlV~~s~~ 295 (629)
.+|||||||+|.++..++++... ..++++|+++.+++.|+++ + .++.+..+|+..++ +++++||.|++++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 48999999999999999988653 3678889999999998754 2 36888888886654 45679999998765
Q ss_pred ccccccCH--------HHHHHHHHhcccCCcEEEEEe
Q 006834 296 LIPWYMYD--------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 296 L~h~~~d~--------~~~L~el~RvLKPGG~liis~ 324 (629)
. +|.... ..++.++.|+|||||.|++.+
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4 554321 468999999999999999985
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=111.60 Aligned_cols=95 Identities=23% Similarity=0.169 Sum_probs=67.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++.....+ .+...++..+.+||+|+++.... .
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~~~~fD~Vvani~~~----~ 191 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGV--ELNVYLPQGDLKADVIVANILAN----P 191 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCC--CceEEEccCCCCcCEEEEcCcHH----H
Confidence 458999999999999988887764 367789999999999876211000 00011122223799999875431 2
Q ss_pred HHHHHHHHHhcccCCcEEEEEeC
Q 006834 303 DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG~liis~P 325 (629)
...++.++.++|||||++++++.
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEC
Confidence 35688999999999999999853
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.6e-10 Score=100.16 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=79.2
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC--CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP--YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~ 295 (629)
.+|||+|||+|.++..+++.+ ...++++|+++..++.|+++ + .++.+.+.|..... +++++||+|+++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999999998 33677889999999999865 2 35889999987765 77899999999887
Q ss_pred ccccccC-------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYMY-------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~d-------~~~~L~el~RvLKPGG~liis~P 325 (629)
+...... ...+++++.++|||||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7543211 24689999999999999999865
|
... |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-09 Score=105.50 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=83.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCC-CCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYP-ARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~p-d~sFDlV~~s~~L 296 (629)
..+|||+|||+|.++..+++.+.. ++++|+++.+++.++++ +. ++.+...+...++.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 458999999999999999887654 56779999999998864 33 477777777666544 4789999999999
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+|.. ++..++.++.++|+|||.++++.+..
T Consensus 123 ~~~~-~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EHVP-DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred HhCC-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 7766 88899999999999999999987543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=110.76 Aligned_cols=133 Identities=22% Similarity=0.242 Sum_probs=94.9
Q ss_pred CCeeeecCCCCCCCCch-HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 189 GHRFRFPGGGTTFPNGA-DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga-~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
+..+.|-+...+|..+. +.-.+.+.+.++...+. +|||+|||.|.++..|++..+ ...++-+|++..+++.|+++
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhH
Confidence 44455555556664443 44466777777765444 899999999999999999987 34788899999999999865
Q ss_pred ---CCCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHH----HHHHHHHhcccCCcEEEEEeC
Q 006834 267 ---GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDG----LYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 267 ---g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~----~~L~el~RvLKPGG~liis~P 325 (629)
+++...+..+..-.+..+ +||+|+|+.-+|.-..-.. +++.+..+.|++||.|+|+..
T Consensus 203 ~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 203 AANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 333312223333334444 9999999998843332223 789999999999999999964
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-09 Score=102.09 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=80.9
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~ 279 (629)
.+.....+.+.+....+. +|||+|||+|.++..+++++.. ..++++|+++.+++.|+++ + .++.+...+..
T Consensus 16 ~~~~r~~~~~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~- 91 (187)
T PRK08287 16 KEEVRALALSKLELHRAK--HLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP- 91 (187)
T ss_pred hHHHHHHHHHhcCCCCCC--EEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-
Confidence 344444555666554444 8999999999999999987542 3577889999999999764 2 24666666553
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.++ .++||+|++..... ....++.++.++|+|||++++..
T Consensus 92 ~~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 92 IEL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred hhc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 233 36899999876542 34568999999999999998864
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.4e-09 Score=103.75 Aligned_cols=105 Identities=26% Similarity=0.226 Sum_probs=78.0
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCC-C-CCCCCCe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR-L-PYPARAF 287 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~-L-p~pd~sF 287 (629)
+.+.+.++ + ..+|||+|||+|.++..+++... ..++++|+++++++.|++++ +.+.+.+... + ++++++|
T Consensus 5 ~~i~~~i~--~--~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 5 ESILNLIP--P--GSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARG--VNVIQGDLDEGLEAFPDKSF 76 (194)
T ss_pred HHHHHhcC--C--CCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcC--CeEEEEEhhhcccccCCCCc
Confidence 34555543 2 33899999999999998876532 13467799999999998765 4566667654 4 4778899
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
|+|+|+.+++|.. ++..+|+++.|+++ ..+++.|+
T Consensus 77 D~Vi~~~~l~~~~-d~~~~l~e~~r~~~---~~ii~~p~ 111 (194)
T TIGR02081 77 DYVILSQTLQATR-NPEEILDEMLRVGR---HAIVSFPN 111 (194)
T ss_pred CEEEEhhHhHcCc-CHHHHHHHHHHhCC---eEEEEcCC
Confidence 9999999997776 88899999988765 44555554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-10 Score=98.53 Aligned_cols=91 Identities=24% Similarity=0.356 Sum_probs=66.6
Q ss_pred EeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccc---eeccccccCCCCC-cccceeeccccccccCCCc
Q 006834 484 MDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIG---TYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 484 lD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~---~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c 559 (629)
||+|||.|-+++.|.+++. .+|+.+|.++.+++.+.++.--. ..+.=-+.+ ++| ++||+|++.++|... .
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~---~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL---E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS---S
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeec---c
Confidence 8999999999999999832 35555566667888888877633 232112333 333 999999999988876 5
Q ss_pred CHHHHHHHHhhcccCCcEEEE
Q 006834 560 DITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+.+.+|.|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 678999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=107.52 Aligned_cols=94 Identities=16% Similarity=0.054 Sum_probs=71.3
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--------YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--------~pd~sFDlV~~s~~ 295 (629)
.+|||+|||+|.++..++++......++++|+++ + ....++.+.++|....+ +.+++||+|+|..+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 4899999999999999998753333567789987 2 12245788888877753 56789999999776
Q ss_pred ccccccCH-----------HHHHHHHHhcccCCcEEEEEe
Q 006834 296 LIPWYMYD-----------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 296 L~h~~~d~-----------~~~L~el~RvLKPGG~liis~ 324 (629)
. ++..++ ..+|.++.++|||||.|++..
T Consensus 127 ~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 127 P-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred C-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5 333221 358999999999999999974
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-09 Score=104.51 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=74.0
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+|||+|||+|.++..++..+.. .++++|+++.+++.|+++ +.++.+...|... .+++++||+|+++..+.+-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~~--~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGAG--SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 48999999999999999987542 567789999999988764 4456666666654 3456799999997644322
Q ss_pred ccC--------------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 300 YMY--------------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 300 ~~d--------------------~~~~L~el~RvLKPGG~liis~P 325 (629)
... ...++.++.++|||||.+++..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 110 23578889999999999998754
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=115.45 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=80.5
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC--CCCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL--PYPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L--p~pd~sFDlV~~s~~L 296 (629)
..+||||||+|.++..++.+.+. ..++|+|+++.+++.|.++ + .++.+..+|+..+ .++++++|.|++++..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 38999999999999999998753 3678889999998888754 3 3678888887654 4788999999987654
Q ss_pred cccccCH------HHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMYD------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d~------~~~L~el~RvLKPGG~liis~ 324 (629)
+|.... ..++.++.|+|+|||.+.+.+
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 665332 479999999999999999985
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=109.86 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=70.6
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEE----EEecCCCCCCC--CCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMI----GVISSKRLPYP--ARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~----~v~d~~~Lp~p--d~sFDlV~~s~~L~ 297 (629)
+.++|+|||+|..+..++++.-. ++++|+|++|++.|++....... ...+.+-.++. ++|.|+|+|..|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~- 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV- 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH-
Confidence 37999999999877777777543 45669999999999876432111 11122223433 8999999999999
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
||. +.+.+++++.|+||+.|-++..
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 998 8899999999999997744444
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=116.10 Aligned_cols=105 Identities=26% Similarity=0.306 Sum_probs=76.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------------CCeEEEEecCCCC----CC
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------------VPAMIGVISSKRL----PY 282 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------------~~~~~~v~d~~~L----p~ 282 (629)
...+|||+|||-|.-+.-....++. .++|+|++...|+.|++|. ..+.+..+|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 4559999999999877777777654 5688899999999999875 2356677665432 13
Q ss_pred C--CCCeeEEEecCcccccccCH---HHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 283 P--ARAFDMAHCSGCLIPWYMYD---GLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 283 p--d~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+ ...||+|-|.+++|+..+.. ..+|..+.+.|+|||+|+.+.|+.+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3 35999999999997777553 3589999999999999999987554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.6e-09 Score=100.33 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=80.2
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCCC--eEEEEecCCCCCCCCCCeeEEEecCcc--
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGVP--AMIGVISSKRLPYPARAFDMAHCSGCL-- 296 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~~--~~~~v~d~~~Lp~pd~sFDlV~~s~~L-- 296 (629)
+|||+|||+|.+...|++.+... .++|+|.|+.+++.|+. ++.+ +.|.++|...-.+..+.||+|+--..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999998764 37899999999999873 2433 899999988777888999999964333
Q ss_pred ---cccccC--HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 297 ---IPWYMY--DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 297 ---~h~~~d--~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++-..+ +..++..+.++|+|||+|+|...+
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 211111 245899999999999999998643
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=103.23 Aligned_cols=104 Identities=11% Similarity=0.038 Sum_probs=73.8
Q ss_pred hcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCC----CCCCCCe
Q 006834 215 LIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRL----PYPARAF 287 (629)
Q Consensus 215 lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~L----p~pd~sF 287 (629)
.+...++. +|||+|||+|.++..|++... .-.++++|+++.|++.+.++ ..++.+..+|.... ++ .++|
T Consensus 67 ~l~i~~g~--~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 67 NFPIKKGS--KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKV 142 (226)
T ss_pred hCCCCCCC--EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccC
Confidence 45655555 999999999999999998743 22577889999988855433 14567777776531 22 3569
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
|+|++.... +.....++.++.|+|||||.++++.+
T Consensus 143 D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 143 DVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999964321 11124568999999999999999754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-09 Score=110.38 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=79.9
Q ss_pred CCCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcC-------CCeEEEEecCCCCCCCCCCeeEEEec
Q 006834 222 NIRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALERG-------VPAMIGVISSKRLPYPARAFDMAHCS 293 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg-------~~~~~~v~d~~~Lp~pd~sFDlV~~s 293 (629)
.+++|+|||||.|.++..++. .......++++|.++++++.|++.. ..+.|.++|....+...+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 355899999998855444433 3223346788899999999998642 34889998887764335789999999
Q ss_pred Ccccccc-cCHHHHHHHHHhcccCCcEEEEEe
Q 006834 294 GCLIPWY-MYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 294 ~~L~h~~-~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++++|. .++..++..+.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888884 568899999999999999999975
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.3e-09 Score=110.48 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=84.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~ 282 (629)
.+.+.+.+...+. .+|||||||+|.++..++++.+. ..++++|. +.+++.++++ + .++.+..+|....++
T Consensus 138 ~~~l~~~~~~~~~--~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGV--KKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCC--CEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC
Confidence 3445555544333 49999999999999999998753 35667797 6888888754 3 247788888776666
Q ss_pred CCCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~P 325 (629)
+. +|+|+++.++|+|..+. ..+|+++.++|+|||.+++...
T Consensus 214 ~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 214 PE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 53 69999999998887442 5799999999999999999753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.96 E-value=4e-09 Score=110.86 Aligned_cols=118 Identities=24% Similarity=0.222 Sum_probs=79.2
Q ss_pred CCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEE
Q 006834 199 TTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGV 274 (629)
Q Consensus 199 t~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v 274 (629)
..|..|.........+++......+.+|||+|||+|.++...++.|.. .+.++|+++.+++.|+++ +....+.+
T Consensus 138 ~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 138 MAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp SSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred CcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 345555555444444444333333459999999999999999999875 457779999999999875 33333433
Q ss_pred ecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 275 ISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 275 ~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.. ......+.||+|+++-.... ...++..+.++|+|||+|++++
T Consensus 216 ~~--~~~~~~~~~dlvvANI~~~v----L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 216 SL--SEDLVEGKFDLVVANILADV----LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp SC--TSCTCCS-EEEEEEES-HHH----HHHHHHHCHHHEEEEEEEEEEE
T ss_pred EE--ecccccccCCEEEECCCHHH----HHHHHHHHHHhhCCCCEEEEcc
Confidence 22 22334589999998765421 2467888999999999999996
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=101.48 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=83.3
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~ 279 (629)
...+++.+.+.+.. ...+|||+|||+|.++..+++.... ..++++|+++.+++.|+++ +. ++.+..+|...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 45556666665542 2348999999999999999987432 3567889999999999864 33 37777777655
Q ss_pred CCCCCCCeeEEEecCccccc------ccC-------------------HHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPW------YMY-------------------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~------~~d-------------------~~~~L~el~RvLKPGG~liis~ 324 (629)
++++++||+|+|+..+... ..+ ...++.++.++|+|||.+++..
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4567899999996554321 100 1257889999999999999974
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=5e-09 Score=110.67 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=74.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC-CCCCCC----CeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR-LPYPAR----AFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~-Lp~pd~----sFDlV~ 291 (629)
+.+|||+|||+|..+..|++.......++++|+|++|++.|+++ . .++.+.++|... ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 34899999999999999998854334678889999999998865 2 345667788765 344432 234455
Q ss_pred ecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
+...+.++..+ ...+|+++.++|+|||.|++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 55566555432 4569999999999999999975
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-10 Score=113.85 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=95.3
Q ss_pred CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC-C-CCCCCeeEEEecCcccc
Q 006834 221 GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL-P-YPARAFDMAHCSGCLIP 298 (629)
Q Consensus 221 g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L-p-~pd~sFDlV~~s~~L~h 298 (629)
+.-+++||+|||||..+..|..+-- .++|+|+|++|++.|.+++.--.+.+++...+ + ..++.||+|.+..++..
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 3367999999999999999988743 56788999999999999986444444444322 2 45678999999999955
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeC--CCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGP--PIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P--~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
+- +.+.++.-+...|+|||.|.+++- +..|... -.+...+-....++....+.-+++.+
T Consensus 201 lG-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~----l~ps~RyAH~~~YVr~~l~~~Gl~~i 261 (287)
T COG4976 201 LG-ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFV----LGPSQRYAHSESYVRALLAASGLEVI 261 (287)
T ss_pred hc-chhhHHHHHHHhcCCCceEEEEecccCCCCCee----cchhhhhccchHHHHHHHHhcCceEE
Confidence 54 888999999999999999999863 1222111 11222233345566677777666554
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=104.81 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=77.9
Q ss_pred HHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----C--CeEEEEecCC
Q 006834 206 DAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----V--PAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~--~~~~~v~d~~ 278 (629)
....+.+.+.+... .....+|||+|||+|.++..|++.+.. ++++|+|+.+++.|+++. . .+.+.+.|
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-- 120 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPEAGLAGNITFEVGD-- 120 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC--
Confidence 33444555555431 112348999999999999999988753 677799999999998752 2 46677666
Q ss_pred CCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEE
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYW 320 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~l 320 (629)
++..+++||+|++..+++|+... ...++.++.+.+++++.+
T Consensus 121 -~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 121 -LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred -chhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 44456889999999999887633 356888888877544433
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-09 Score=111.12 Aligned_cols=112 Identities=24% Similarity=0.320 Sum_probs=79.7
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCC
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSK 278 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~ 278 (629)
..+..-++.+.+++. ++++|||+|||+|.++...++.|.. .+.++|+++-+++.|+++ +++.........
T Consensus 147 pTT~lcL~~Le~~~~----~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~ 220 (300)
T COG2264 147 PTTSLCLEALEKLLK----KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFL 220 (300)
T ss_pred hhHHHHHHHHHHhhc----CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhccccc
Confidence 334444666666654 3569999999999999999999876 456779999999999875 333211111112
Q ss_pred CCCCCC-CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPA-RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd-~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+..+. +.||+|+++- |-+. ...+..++.+.|||||++++++
T Consensus 221 ~~~~~~~~~~DvIVANI-LA~v---l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 221 LLEVPENGPFDVIVANI-LAEV---LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred chhhcccCcccEEEehh-hHHH---HHHHHHHHHHHcCCCceEEEEe
Confidence 222333 5999999976 3222 2578999999999999999996
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=103.28 Aligned_cols=100 Identities=17% Similarity=0.076 Sum_probs=83.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-----------------CCCeEEEEecCCCCCCC--
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-----------------GVPAMIGVISSKRLPYP-- 283 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-----------------g~~~~~~v~d~~~Lp~p-- 283 (629)
+.+||+.|||.|.-+.+|+++|..++ |+|+|+.+++.+.++ +..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~---GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVI---GIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEE---EEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 34899999999999999999998655 459999999997552 34678899999888642
Q ss_pred -CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 -ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 -d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
.+.||+|+-..+|++++++ ...+.+.+.++|+|||.+++..-
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2689999998889888866 46799999999999999988764
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-09 Score=102.87 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=89.5
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecC-CCCCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISS-KRLPYP 283 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~-~~Lp~p 283 (629)
.....+.-.+++....+...-|||||||+|..+..|.+.|. -++|+|+|+.|++.|.++-....+..+|. +-+||.
T Consensus 33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFR 109 (270)
T ss_pred hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCC
Confidence 34455666677766655667899999999999999999885 35677999999999998755555555553 778999
Q ss_pred CCCeeEEEecCccccccc-------CHH----HHHHHHHhcccCCcEEEEEe
Q 006834 284 ARAFDMAHCSGCLIPWYM-------YDG----LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~-------d~~----~~L~el~RvLKPGG~liis~ 324 (629)
.++||.|++...+ .|.= +|. .++..++.+|++|+..++..
T Consensus 110 pGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 110 PGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 9999999986665 3321 122 47888999999999999984
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.6e-09 Score=87.64 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=76.6
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-----CCCeEEEEecCCCCCC-CCCCeeEEEecCcccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-----GVPAMIGVISSKRLPY-PARAFDMAHCSGCLIP 298 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-----g~~~~~~v~d~~~Lp~-pd~sFDlV~~s~~L~h 298 (629)
++||+|||.|.++..+++.. ...++++|.++.+++.+++. .....+...+...... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 48999999999999998832 33667889999999988722 2346677777665543 5678999999999866
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEE
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+......++..+.+.|+|||.+++.
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4446788999999999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-08 Score=96.12 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC---eEEEEecCCCCCCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP---AMIGVISSKRLPYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~---~~~~v~d~~~Lp~pd~sFDlV~~s~~ 295 (629)
+.+|||+|||+|.++..+++++. .++++|+++.+++.++++ +.. +.+...|... ++.+++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 34899999999999999998854 556779999999998754 222 6677766544 345568999998765
Q ss_pred cccccc--------------------CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYM--------------------YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~--------------------d~~~~L~el~RvLKPGG~liis~P 325 (629)
+.+..+ ....+++++.++|||||.+++..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 533110 124579999999999999998764
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-08 Score=102.65 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=89.4
Q ss_pred CCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEE
Q 006834 200 TFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIG 273 (629)
Q Consensus 200 ~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~ 273 (629)
.|+-+.+.. .+..+..... ..+|||+|||+|..+..++++-.. ..++++|+.+++.++|++.- ..+.+.
T Consensus 26 ~~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 26 GFRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred ccccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEe
Confidence 344455544 4556655443 458999999999999999998443 47888899999999998751 357788
Q ss_pred EecCCCCC--CCCCCeeEEEecCcccccccC-----------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 274 VISSKRLP--YPARAFDMAHCSGCLIPWYMY-----------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 274 v~d~~~Lp--~pd~sFDlV~~s~~L~h~~~d-----------------~~~~L~el~RvLKPGG~liis~P 325 (629)
+.|...+. ....+||+|+|+.-+..-... .+.+++...++|||||++.++.|
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 88877664 334579999997766433222 23678889999999999999965
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=99.07 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=76.4
Q ss_pred hhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCC-CCCCCC
Q 006834 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRL-PYPARA 286 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~L-p~pd~s 286 (629)
..+...++. +|||+|||+|.++..++........++++|+++.+++.|+++ + .++.+...|.... +..++.
T Consensus 34 ~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 344444444 899999999999998876521222567779999999988764 3 2467777776543 333468
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
||.|++.... .+...++.++.++|||||++++..
T Consensus 112 ~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 112 FDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999985422 256789999999999999999864
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-09 Score=100.46 Aligned_cols=72 Identities=21% Similarity=0.083 Sum_probs=64.0
Q ss_pred eecCcHHHHHHHHHcC--------CCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 252 RRDTHEAQVQFALERG--------VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 252 gvDiS~~~i~~A~erg--------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
|+|+|++|++.|+++. .++.+.++|...+|+++++||+|++..+++++. ++..+|++++|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEE
Confidence 5699999999997542 257899999999999999999999999997765 8999999999999999999987
Q ss_pred e
Q 006834 324 G 324 (629)
Q Consensus 324 ~ 324 (629)
.
T Consensus 81 d 81 (160)
T PLN02232 81 D 81 (160)
T ss_pred E
Confidence 4
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=106.86 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP 281 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp 281 (629)
.+...+.++....++. +|||+|||+|.++..++..+. .++++|+++.|++.|+++ +. ++.+...|..++|
T Consensus 169 ~la~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 169 KLARAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred HHHHHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 3444555555444444 899999999999988877665 456779999999988764 32 3577888999999
Q ss_pred CCCCCeeEEEecCcccc---cc-----cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIP---WY-----MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h---~~-----~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++++||+|+++..+.. .. .....++.++.++|||||++++..|.
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 88889999999643311 00 01357999999999999999998764
|
This family is found exclusively in the Archaea. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-08 Score=104.33 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=69.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHH----HHHHHHHcCCCeEEEEecCCC---CCCCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEA----QVQFALERGVPAMIGVISSKR---LPYPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~----~i~~A~erg~~~~~~v~d~~~---Lp~pd~sFDlV~~s~~L 296 (629)
.+|||+|||+|.++..+++..-..-.++++|+++. +++.|+++ .++.+.+.|... +..+..+||+|++....
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~ 212 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCCC
Confidence 49999999999999999987421124677799986 45555544 456777777643 22234589999987632
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+.+...++.++.++|||||+|++.
T Consensus 213 ---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 213 ---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ---cchHHHHHHHHHHhccCCCEEEEE
Confidence 223456778999999999999996
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.3e-09 Score=108.17 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=81.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----------CCeEEEEecCC------CCCCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----------VPAMIGVISSK------RLPYPAR 285 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----------~~~~~~v~d~~------~Lp~pd~ 285 (629)
+..+||+|||-|.-+...-+.++. .++++|+++..|+.|++|. .++.|..+|.. .+++++.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 347999999999888877777765 5688899999999999763 24677777753 3455666
Q ss_pred CeeEEEecCcccccccC---HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 286 AFDMAHCSGCLIPWYMY---DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+||+|-|.+++|.-... ...+|..+.+.|||||+||-+.|+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 79999999999554433 24589999999999999999988654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-08 Score=98.71 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L 280 (629)
......+.+.+...++. +|||+|||+|.++..|++... .++++|.++++++.|+++ +. ++.+...|....
T Consensus 64 p~~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 138 (212)
T PRK00312 64 PYMVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC
Confidence 34455666666655444 899999999999998887753 456779999999999865 22 477777775443
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
..+.++||+|++...+.++ ..++.+.|+|||.+++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~-------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI-------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh-------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999997765433 3567899999999999753
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.9e-08 Score=98.99 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=81.7
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~ 279 (629)
.+.+++.+.+.+...+ ..+|||+|||+|.++..++..... ..++++|+++.+++.|+++. .++.+...|...
T Consensus 93 te~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 93 TEELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE 169 (275)
T ss_pred cHHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence 3555665554443333 348999999999999999987632 35778899999999998752 357777777643
Q ss_pred CCCCCCCeeEEEecCcccccc------c-------------------CHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWY------M-------------------YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~------~-------------------d~~~~L~el~RvLKPGG~liis~ 324 (629)
++++++||+|+++..+.... . ....++.++.++|+|||++++..
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 23457999999965432110 0 01357888889999999999964
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.2e-08 Score=104.92 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRL 280 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~L 280 (629)
.+.+++.+.+.+. . ..+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +.++.+..+|....
T Consensus 238 TE~LVe~aL~~l~--~--~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~ 312 (423)
T PRK14966 238 TEHLVEAVLARLP--E--NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLGARVEFAHGSWFDT 312 (423)
T ss_pred HHHHHHHhhhccC--C--CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc
Confidence 3455555555443 2 238999999999999998875432 2567789999999999865 45678888887544
Q ss_pred CCC-CCCeeEEEecCccccccc--------------------C----HHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYP-ARAFDMAHCSGCLIPWYM--------------------Y----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~p-d~sFDlV~~s~~L~h~~~--------------------d----~~~~L~el~RvLKPGG~liis~ 324 (629)
.++ .++||+|+|+.....-.. + ...++.++.+.|+|||.+++..
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 332 458999999775432110 0 1246677788999999998874
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-08 Score=97.49 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHH----hhcc--cceecc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIY----ERGL--IGTYQD 531 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----ergl--i~~~~~ 531 (629)
..|++++-.-..+...+..+ ..|||+|||+|.++..|+.. +- ..|+.+|.++.++..+. +.|+ +-+++.
T Consensus 27 ~~~~~~~~d~l~l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPGG--ERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 48888885544444445544 35999999999988887642 21 35566666656665443 4455 444553
Q ss_pred ccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE--EeecCCC
Q 006834 532 WCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ--IMDHESG 609 (629)
Q Consensus 532 ~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~--~~~~e~~ 609 (629)
-.+.+.. ..+||+|-+.. ..+++.++.++.|+|||||.+++-+.......+..++..+-|.+. +.-+-.|
T Consensus 103 d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred cHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 3444444 57999998853 246789999999999999999999888888899999998889854 2222234
Q ss_pred CCCCceEEEEEec
Q 006834 610 PFNPEKILFAAKT 622 (629)
Q Consensus 610 ~~~~e~~l~~~K~ 622 (629)
-.++-.+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 4345566777774
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=97.87 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=68.5
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--------YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--------~pd~sFDlV~~s~~ 295 (629)
.+|||+|||+|.++..++++......++++|+++.+ ...++.+...|....+ +++++||+|++..+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 489999999999999998875333356788999865 2234667777765532 45678999998643
Q ss_pred cc---ccccC-------HHHHHHHHHhcccCCcEEEEEe
Q 006834 296 LI---PWYMY-------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 296 L~---h~~~d-------~~~~L~el~RvLKPGG~liis~ 324 (629)
.+ +|..+ ...++.++.++|+|||++++..
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 21 11111 2568999999999999999974
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=98.54 Aligned_cols=118 Identities=12% Similarity=0.046 Sum_probs=80.7
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~ 278 (629)
.+.+++.+.+.+..... ..+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +. ++.+..+|..
T Consensus 98 te~lv~~~l~~~~~~~~-~~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQNP-ILHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhcCC-CCEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh
Confidence 35555555443321111 148999999999999999987542 3567889999999999874 33 3778877765
Q ss_pred CCCCCCCCeeEEEecCcccc-------------ccc-----------CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIP-------------WYM-----------YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h-------------~~~-----------d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ++++++||+|+++.-... -+. ....++.++.++|+|||++++...
T Consensus 176 ~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 176 E-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred c-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 4 344558999999642211 110 123578899999999999999753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.9e-08 Score=95.01 Aligned_cols=113 Identities=17% Similarity=0.016 Sum_probs=78.4
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~ 279 (629)
.......+.+.+....+. +|||+|||+|.++..++..... ..++++|+++.+++.|+++ + .++.+...|...
T Consensus 25 ~~~v~~~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 25 KREVRLLLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 344444566666554444 8999999999999999865422 3567789999999999864 3 246777766543
Q ss_pred -CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 280 -LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 280 -Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++.....+|.++... ..+...++.++.++|+|||++++..+
T Consensus 102 ~~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 102 CLAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 222223467665422 22456899999999999999999854
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=98.96 Aligned_cols=100 Identities=12% Similarity=0.024 Sum_probs=73.7
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
.+|||+|||+|.++..+++.... ..++++|+|+.+++.|+++ +. ++.+...|... ++++++||+|+++.-..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 48999999999999999987532 2567789999999999865 33 47788777643 23556899999974321
Q ss_pred c------c----ccC--------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 P------W----YMY--------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h------~----~~d--------------~~~~L~el~RvLKPGG~liis~P 325 (629)
. . ..+ ...++.++.++|+|||.+++...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 0 001 13578899999999999999753
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-08 Score=99.51 Aligned_cols=122 Identities=17% Similarity=0.220 Sum_probs=90.1
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-EeEEEeecCcHHHHHHHHHcCC------CeEEEEe
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-TMSFARRDTHEAQVQFALERGV------PAMIGVI 275 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-~v~i~gvDiS~~~i~~A~erg~------~~~~~v~ 275 (629)
..+.-+...+.++++.......+||+||||.|.....|++-... ...+.+.|.|+.+++..+++.. .+.+..+
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dl 131 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDL 131 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceec
Confidence 34455566777777665444448999999999999888886532 3567788999999999987631 1222222
Q ss_pred cCC--CCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 276 SSK--RLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 276 d~~--~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
+.. .-+...+++|+|++.++|..++++ ...++.++.++|||||.+++..
T Consensus 132 t~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred cchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 222 235668999999999999888766 4579999999999999999974
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-08 Score=98.38 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=79.2
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~ 279 (629)
+......+.+.+...++. +|||||||+|.+++.|+...-....++++|..+..++.|+++ +. ++.+.++|...
T Consensus 57 ~P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 455677788888877776 999999999999999998632222456679999999999875 33 68888888654
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
-.-....||.|++.......+ ..+.+.|++||++++-.
T Consensus 135 g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEE
T ss_pred ccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEE
Confidence 332456899999988774433 45677799999999964
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-08 Score=101.75 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=87.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
...++|||||.|.....|...++. .++-+|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 447999999999999999999865 456789999999999865 344667788999999999999999999999 99
Q ss_pred ccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 300 YMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 300 ~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
..+....+.++...|||+|.|+-+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHH
Confidence 9888889999999999999998874
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=94.69 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=83.7
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~ 279 (629)
.......+.+.+...++. +|||||||+|+.++.|++..-.++++ |..++..+.|+++ +. ++.+.++|...
T Consensus 57 ~P~~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~si---Er~~~L~~~A~~~L~~lg~~nV~v~~gDG~~ 131 (209)
T COG2518 57 APHMVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSI---ERIEELAEQARRNLETLGYENVTVRHGDGSK 131 (209)
T ss_pred CcHHHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEE---EEcHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 345566777888877776 99999999999999999986655555 9999999999875 33 68888888654
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
---+...||.|+........+ ..+.+.|||||.+++-.
T Consensus 132 G~~~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 332457899999988775555 45667899999999964
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-07 Score=97.61 Aligned_cols=99 Identities=12% Similarity=-0.004 Sum_probs=73.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
.+|||+|||+|.++..++..... ..++++|+|+.+++.|+++ +. ++.+..+|... ++++++||+|+|+....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 48999999999999999987532 3567889999999999865 32 47788877643 23456899999974321
Q ss_pred c-------------ccc-------C----HHHHHHHHHhcccCCcEEEEEe
Q 006834 298 P-------------WYM-------Y----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 298 h-------------~~~-------d----~~~~L~el~RvLKPGG~liis~ 324 (629)
. .+. + ...++.++.++|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 110 0 1357899999999999999974
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.5e-07 Score=92.87 Aligned_cols=119 Identities=17% Similarity=0.101 Sum_probs=80.2
Q ss_pred chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCC-
Q 006834 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRL- 280 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~L- 280 (629)
.+..+++.+.+.+.... ...+|||+|||+|.++..+++.... ..++++|+|+.+++.|+++- ....+...|....
T Consensus 69 ~Te~Lv~~~l~~~~~~~-~~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l 146 (251)
T TIGR03704 69 RTEFLVDEAAALARPRS-GTLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL 146 (251)
T ss_pred cHHHHHHHHHHhhcccC-CCCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc
Confidence 34556666665543221 2347999999999999999876431 25677899999999998652 1246777776442
Q ss_pred CC-CCCCeeEEEecCcccccc------c---------------C----HHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PY-PARAFDMAHCSGCLIPWY------M---------------Y----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~-pd~sFDlV~~s~~L~h~~------~---------------d----~~~~L~el~RvLKPGG~liis~ 324 (629)
+. ..++||+|+++.-..... + + ...++..+.++|+|||.+++..
T Consensus 147 ~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 147 PTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred chhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 21 135799999976543211 0 0 1257777889999999999985
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.8e-09 Score=101.44 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=110.5
Q ss_pred ecCCCCCCCCchHHHHHHHHhhcCcc----CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCC
Q 006834 194 FPGGGTTFPNGADAYIDNINELIPLT----GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVP 269 (629)
Q Consensus 194 Fpgggt~f~~ga~~~i~~I~~lL~~~----~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~ 269 (629)
|-|.|+||.-..+ ++.+++... ...+.++||+|+|.|..+..++...-. +.+.+.|..|+...++++-+
T Consensus 84 ~lgrGsMFifSe~----QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~kk~yn 156 (288)
T KOG3987|consen 84 FLGRGSMFIFSEE----QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKKKNYN 156 (288)
T ss_pred ccccCceEEecHH----HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhhcCCc
Confidence 3455566633333 344444332 233568999999999999998876443 45669999999999887744
Q ss_pred eEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccC-CcEEEEE--eCCCCccccc--cCccCcchhhh
Q 006834 270 AMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRP-GGYWILS--GPPIHWKKYW--RGWERTKEDLK 344 (629)
Q Consensus 270 ~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKP-GG~liis--~P~~~w~~~~--~~w~~~~e~l~ 344 (629)
+. ......-.+-+||+|.|.+.| .-..++..+|..+..+|+| +|..+++ -|-..+.... +.|.++.+-+.
T Consensus 157 Vl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le 231 (288)
T KOG3987|consen 157 VL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLE 231 (288)
T ss_pred ee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHH
Confidence 32 222222234579999998877 3444789999999999999 8887774 3555555422 23555544444
Q ss_pred hHHHHHHHHHHHhcceeecccCceEEEeccCCccccccccccCCCCCCCCCCCCCCccc
Q 006834 345 QEQDTIEDIAKRLCWKKLIEKNDLAIWQKPINHIDCNKSKVVYKTPQICGPDNPDTAWY 403 (629)
Q Consensus 345 ~~~~~ie~l~~~l~w~~v~~~~~~aiwqKp~~~~~c~~~r~~~~~p~lC~~~~~d~~wy 403 (629)
...+..++.+.++- .+.++.... +..+++ .|++|++|.-++++|
T Consensus 232 ~~Gr~~ee~v~~~~--e~lr~~g~~--------veawTr-----lPYLCEGDm~ns~Y~ 275 (288)
T KOG3987|consen 232 NNGRSFEEEVARFM--ELLRNCGYR--------VEAWTR-----LPYLCEGDMHNSFYW 275 (288)
T ss_pred hcCccHHHHHHHHH--HHHHhcCch--------hhhhhc-----CCeecccccccceEE
Confidence 43333433333221 111111111 233443 399999887666555
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-07 Score=107.05 Aligned_cols=123 Identities=18% Similarity=0.193 Sum_probs=77.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc----cceec-cccccCCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL----IGTYQ-DWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl----i~~~~-~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
+.|||++||+|+|+.+++..+.- .|+.+|.++..+..+.+ -|+ +-+++ |..+-+....+.||+|=++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 46999999999999999987642 35556666566665544 233 12222 322222223678999876421
Q ss_pred -ccccC-------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEee
Q 006834 552 -FSIYQ-------DRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 552 -fs~~~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~ 605 (629)
|+..+ ..-+...++...-|+|+|||.+++...........+.+..-.+.+++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 21111 0112456888889999999999987554444444666677788887765
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=101.27 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=78.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L 280 (629)
..+...+.+.+...++. +|||+|||+|.++..+++.....-.++++|+++++++.|+++ +. ++.+..+|....
T Consensus 66 p~l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 66 PSLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc
Confidence 33445565666554444 899999999999999998643211356779999999998863 33 467777776655
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+....+||+|++...+.+. ...+.+.|+|||.+++..
T Consensus 144 ~~~~~~fD~Ii~~~g~~~i-------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVDEV-------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccccCCccEEEECCchHHh-------HHHHHHhcCCCCEEEEEe
Confidence 5445689999987655332 235678999999998864
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.2e-07 Score=102.88 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=81.3
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC--CCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP--YPA 284 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp--~pd 284 (629)
.+...+...++. +|||+|||+|..+..++++... ..++++|+++.+++.++++ +..+.+...|...++ ++.
T Consensus 235 ~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 235 LAATLLAPQNGE--RVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 444555554444 8999999999999999987642 3567889999999998765 455677788877654 345
Q ss_pred CCeeEEEecCc------cc-----ccccC----------HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 285 RAFDMAHCSGC------LI-----PWYMY----------DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 285 ~sFDlV~~s~~------L~-----h~~~d----------~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++||.|++... +. .|... ...+|..+.++|||||++++++..
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 78999995221 10 11111 136899999999999999998743
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=91.65 Aligned_cols=105 Identities=12% Similarity=0.007 Sum_probs=77.1
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd~s 286 (629)
+.+.+.+....+. +|||+|||+|.++..+++++. .++++|+++.+++.++++. .++.+...|...+++++.+
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 3455555544444 899999999999999999854 4567799999999998763 3578889999988888778
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhc--ccCCcEEEEE
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRV--LRPGGYWILS 323 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~Rv--LKPGG~liis 323 (629)
||.|+++..+ |.. ...+..+.+. +.++|.+++.
T Consensus 78 ~d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 78 PYKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 9999987655 332 2334433332 4578888776
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-08 Score=103.90 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=85.8
Q ss_pred hhchhhHHHHHHHHHHHHHhhc--ccCCC---------------CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCC
Q 006834 452 EKLREDNELWKDRMTYYKKIDG--LFHKG---------------RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNP 514 (629)
Q Consensus 452 ~~f~~d~~~w~~~v~~y~~~~~--~~~~~---------------~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~ 514 (629)
..|.+.+||-..++..|+.+.+ .+.+| .-..|||+|||+|+.+.+|++.. -..|+.+|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 4577788888888888887764 23332 22459999999999999987641 12455556666
Q ss_pred CchHHHHhhcc----cceeccccccCC--CCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 515 DTLGAIYERGL----IGTYQDWCEAFS--TYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 515 ~~l~~~~ergl----i~~~~~~~e~f~--~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+++..+.++-- +.+.+ ..+. +|| .+||+|++..+|-.. ...+...+|.|+.|+|||||++++.|.
T Consensus 86 ~~~~~a~~~~~~~~~i~~~~---~D~~~~~~~~~~FD~V~s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFEA---NDILKKDFPENTFDMIYSRDAILHL-SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCcCCceEEEE---CCcccCCCCCCCeEEEEEhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 77887777632 22222 2222 355 799999985544321 223678899999999999999999875
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.4e-09 Score=98.27 Aligned_cols=94 Identities=24% Similarity=0.426 Sum_probs=69.3
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeeccccccccCCC
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQDR 558 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~ 558 (629)
-.+|||+|||.|.++..|++.+. +++.+|.++.++.. +......++ +.....| ++||+|.|..+|....
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~-- 92 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLP-- 92 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSS--
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhcc--
Confidence 33699999999999999988877 55666665445555 222222110 1122233 8999999999988766
Q ss_pred cCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 559 CDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 559 c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
+...+|.+|-|+|||||++++.+..
T Consensus 93 -d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 -DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4789999999999999999999765
|
... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=92.86 Aligned_cols=113 Identities=19% Similarity=0.384 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH----HcC-----CCeEEEEec
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL----ERG-----VPAMIGVIS 276 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~----erg-----~~~~~~v~d 276 (629)
+...+.|.++++... .+|||||||||..+.+++++.+. +...+.|..+..+.... +.+ .++. .|
T Consensus 12 ~pIl~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~---lD 84 (204)
T PF06080_consen 12 DPILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLA---LD 84 (204)
T ss_pred hHHHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeE---ee
Confidence 445666666665421 15999999999999999998764 46888899888754333 222 1233 33
Q ss_pred CCCC--CC------CCCCeeEEEecCcccccccC--HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 277 SKRL--PY------PARAFDMAHCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 277 ~~~L--p~------pd~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+..- +. ..++||+|+|.+++ |+.+- -+.++..+.++|+|||.|++.+|.
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 3222 22 35699999999988 66534 356999999999999999999983
|
The function of this family is unknown. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=97.53 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=75.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----------CCCeEEEEecCCCC-CCCCCCeeEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----------GVPAMIGVISSKRL-PYPARAFDMA 290 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----------g~~~~~~v~d~~~L-p~pd~sFDlV 290 (629)
.+++||++|||+|..+..++++.. +..++.+|+++.+++.|++. ..++.+...|.... ....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 356899999999999999998621 22577889999999999864 23467777776543 3346789999
Q ss_pred EecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
++...- ++... ...+++.+.+.|+|||.+++..
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 985432 32211 2568899999999999998753
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=97.00 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=76.7
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC-
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY- 302 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d- 302 (629)
.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++..++.+...|...+. ..++||+|+++..+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 4899999999999988877632 13567889999999999987667888888887665 34689999998888764322
Q ss_pred ------------------HHHHHHHHHhcccCCcEEEEE
Q 006834 303 ------------------DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 303 ------------------~~~~L~el~RvLKPGG~liis 323 (629)
...++..+.++|+|+|.+.+.
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 124667778899999977775
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-07 Score=101.12 Aligned_cols=117 Identities=14% Similarity=0.102 Sum_probs=80.8
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEE--EEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMI--GVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~--~v~d~~~Lp~ 282 (629)
...+...+...++. +|||+|||+|..+..+++... ...++++|+++.+++.++++ +..+.+ ..+|....+.
T Consensus 227 s~~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 227 AQWVATWLAPQNEE--TILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 34555555555554 899999999999999998643 23578889999999988765 444333 4445444443
Q ss_pred --CCCCeeEEEe----c--Cccccccc-----C----------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 283 --PARAFDMAHC----S--GCLIPWYM-----Y----------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 283 --pd~sFDlV~~----s--~~L~h~~~-----d----------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+.++||.|++ + .++.+.++ . ...+|.++.++|||||.+++++...+
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 4678999995 2 23322211 1 24689999999999999999975443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.9e-08 Score=95.43 Aligned_cols=139 Identities=13% Similarity=0.135 Sum_probs=89.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
...++||.|+|.|+.+..|+-.-+..+ .-+|..+.+++.|++.- .-..+.+...+.+..+.++||+|.+.+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~V--DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEV--DLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEE--EEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEe--EEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998877656544 55799999999999642 22556666777665456799999999999
Q ss_pred cccccC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeecc
Q 006834 297 IPWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 297 ~h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
.|+.++ ...+|..+...|+|||++++-..-...- ...+...........+.+.++.+..+++.+.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~--~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG--FDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS--EEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC--CcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 999844 3579999999999999999954211110 01233333344444566777888877766543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=98.75 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=70.6
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc---------cceeccccccCCCCC-cccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL---------IGTYQDWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl---------i~~~~~~~e~f~~yp-~t~Dl~H~~ 549 (629)
..|||+|||+|.++..|.++ +. --+|+.+|.+++++..+.+|.- +...+.-.+.+ ++| .+||+|.+.
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEEe
Confidence 36999999999999888764 21 0256677777789999877631 22233222333 355 799999987
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.++.... +...+|.||-|+|||||.+++.|-
T Consensus 153 ~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 153 YGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred cccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 6665443 568899999999999999999763
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-07 Score=92.07 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH-cCC----------------
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE-RGV---------------- 268 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e-rg~---------------- 268 (629)
..+.+.+.+ +.... ..+||..|||.|.-+.+|+++|..+ +|+|+|+.+++.+.+ ++.
T Consensus 24 p~L~~~~~~-l~~~~--~~rvLvPgCG~g~D~~~La~~G~~V---vGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 24 PALVEYLDS-LALKP--GGRVLVPGCGKGYDMLWLAEQGHDV---VGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp HHHHHHHHH-HTTST--SEEEEETTTTTSCHHHHHHHTTEEE---EEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred HHHHHHHHh-cCCCC--CCeEEEeCCCChHHHHHHHHCCCeE---EEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 444444444 33333 3489999999999999999998755 555999999999853 321
Q ss_pred CeEEEEecCCCCCCCC-CCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 269 PAMIGVISSKRLPYPA-RAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 ~~~~~v~d~~~Lp~pd-~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.+.+.++|...++-.. ++||+|+-..+|+-++++ ...+.+.+.++|+|||.+++.+
T Consensus 98 ~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 98 RITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp SEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3567788888876433 589999987777666655 5789999999999999955543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.2e-07 Score=90.34 Aligned_cols=124 Identities=20% Similarity=0.231 Sum_probs=74.4
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCee
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFD 288 (629)
.+.|.+.+...+. ...|.|+|||.+.++..+. .+..+.++ |+... +-.+..+|+..+|+++++.|
T Consensus 60 vd~iI~~l~~~~~-~~viaD~GCGdA~la~~~~-~~~~V~Sf---DLva~----------n~~Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 60 VDVIIEWLKKRPK-SLVIADFGCGDAKLAKAVP-NKHKVHSF---DLVAP----------NPRVTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHHCTS-T-TS-EEEES-TT-HHHHH---S---EEEE---ESS-S----------STTEEES-TTS-S--TT-EE
T ss_pred HHHHHHHHHhcCC-CEEEEECCCchHHHHHhcc-cCceEEEe---eccCC----------CCCEEEecCccCcCCCCcee
Confidence 4455555554332 3489999999999986654 34455566 77521 12366789999999999999
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeecc
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
++++...|+ ..+-..++.|+.|+|||||.|+|+.-... . . ..+.+.+..++++++...+
T Consensus 125 v~VfcLSLM--GTn~~~fi~EA~RvLK~~G~L~IAEV~SR----f----------~-~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 125 VAVFCLSLM--GTNWPDFIREANRVLKPGGILKIAEVKSR----F----------E-NVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------S--HHHHHHHHHCTTEEEEEE
T ss_pred EEEEEhhhh--CCCcHHHHHHHHheeccCcEEEEEEeccc----C----------c-CHHHHHHHHHHCCCeEEec
Confidence 999877763 33678899999999999999999842111 1 1 2345667788999987764
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.4e-07 Score=100.70 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=82.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-- 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-- 281 (629)
...+...+...++. +|||+|||+|..+..+++.......++++|+++.+++.++++ |. ++.+...|...++
T Consensus 241 s~l~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 241 AQLVAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred HHHHHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 33444455544444 899999999999999988632222567889999999988764 33 4777888877765
Q ss_pred --CCCCCeeEEEec------Cccccccc-----C----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 282 --YPARAFDMAHCS------GCLIPWYM-----Y----------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 282 --~pd~sFDlV~~s------~~L~h~~~-----d----------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+..++||.|++. .++.+-++ . ...+|.++.++|||||+++.++...
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 446789999962 22222110 0 2468999999999999999986443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-07 Score=103.06 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=78.0
Q ss_pred hhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCee
Q 006834 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFD 288 (629)
..+...++ .+|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+...|...++ ++++||
T Consensus 244 ~~l~~~~g--~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 244 LLLNPQPG--STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred HhcCCCCC--CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCC
Confidence 34444444 4899999999999988887532222567789999999988764 43 4677778877665 567899
Q ss_pred EEEec----C--ccc-----ccccC----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 289 MAHCS----G--CLI-----PWYMY----------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 289 lV~~s----~--~L~-----h~~~d----------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+|++- . .+. .|... ...+|.++.++|||||++++++...
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99951 1 110 11111 2358999999999999999997544
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-08 Score=102.13 Aligned_cols=102 Identities=19% Similarity=0.332 Sum_probs=68.1
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHH----HHhhcccceeccccccCCCCCcccceeec
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGA----IYERGLIGTYQDWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~ergli~~~~~~~e~f~~yp~t~Dl~H~ 548 (629)
.|.+|. .|||+|||.||++.+++++ ++-|.-|. .++++... +.++||-....--+..+..++.+||-|=+
T Consensus 59 ~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~git---lS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvS 133 (273)
T PF02353_consen 59 GLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGIT---LSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVS 133 (273)
T ss_dssp T--TT---EEEEES-TTSHHHHHHHHHH--EEEEEE---S-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEE
T ss_pred CCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEE---CCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEE
Confidence 377776 5999999999999999988 66333332 33455554 56888855444444566677779999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.++|..-.. -+.+.++..++|+|+|||.+++.
T Consensus 134 i~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 134 IEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred EechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 888876543 46789999999999999999984
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-07 Score=91.23 Aligned_cols=104 Identities=22% Similarity=0.277 Sum_probs=68.0
Q ss_pred CCCCeEEEeCCCCc----hHHHHHHHc--C--CcEeEEEeecCcHHHHHHHHHc--------C-----------------
Q 006834 221 GNIRTAVDTGCGVA----SWGAYLLKR--D--ILTMSFARRDTHEAQVQFALER--------G----------------- 267 (629)
Q Consensus 221 g~~~~VLDIGCGtG----~~a~~La~~--g--~~~v~i~gvDiS~~~i~~A~er--------g----------------- 267 (629)
+..-+|+..||++| +++..|.+. + ...+.|.++|+|+.+++.|++- +
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 34568999999999 455555551 1 2246889999999999999831 0
Q ss_pred --------CCeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 268 --------VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 268 --------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
..+.|...+....+.+.+.||+|+|-++|+++... ...++..+++.|+|||+|++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 13667777776634456899999999999988754 4579999999999999999963
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=95.43 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=70.3
Q ss_pred CCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCcccceeeccccccccC
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQ 556 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~ 556 (629)
....+|||+|||+|.++..|.+.+. .|+.+|.++.++..+.++.- +.....=.+.++..+.+||+|-++..+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~-- 115 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQW-- 115 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhh--
Confidence 3455799999999999999987653 55666777788888888753 22222111333322379999987554432
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
--+...+|.|+.|+|||||.++++.
T Consensus 116 -~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 116 -CGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred -cCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 2356889999999999999999984
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=98.75 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=81.1
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc------------CCCeEEEE
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER------------GVPAMIGV 274 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er------------g~~~~~~v 274 (629)
.|.+.+....-.....+++||++|||+|..+..+++... +..++.+|+++++++.|++. ..++.+.+
T Consensus 135 iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 135 IYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 345555443222223456999999999999999988642 33678889999999999961 24677778
Q ss_pred ecCCC-CCCCCCCeeEEEecCccccccc-----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 275 ISSKR-LPYPARAFDMAHCSGCLIPWYM-----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 275 ~d~~~-Lp~pd~sFDlV~~s~~L~h~~~-----d~~~~L~el~RvLKPGG~liis~ 324 (629)
.|... +.-..++||+|++...- +... ....++..+.+.|+|||.+++..
T Consensus 214 ~Da~~fL~~~~~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 214 CDAKEFLSSPSSLYDVIIIDFPD-PATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CcHHHHHHhcCCCccEEEEcCCC-ccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 77665 33345789999986321 1110 12568999999999999998863
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=96.29 Aligned_cols=114 Identities=22% Similarity=0.306 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc------cceeccc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL------IGTYQDW 532 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl------i~~~~~~ 532 (629)
..|++..-. .+ .+.+|. +|||++||+|=+|..+++.-= .-.|+.+|-+.+||.++.+|-- |-.++.-
T Consensus 37 ~~Wr~~~i~---~~-~~~~g~--~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~d 109 (238)
T COG2226 37 RLWRRALIS---LL-GIKPGD--KVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGD 109 (238)
T ss_pred HHHHHHHHH---hh-CCCCCC--EEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEec
Confidence 677765431 11 123444 599999999999999987621 4567777888899999999876 2233433
Q ss_pred cccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 533 CEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 533 ~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
-|.++ || +|||++=+...+-+- -+++..|.||.|||||||.+++-+.
T Consensus 110 Ae~LP-f~D~sFD~vt~~fglrnv---~d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 110 AENLP-FPDNSFDAVTISFGLRNV---TDIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hhhCC-CCCCccCEEEeeehhhcC---CCHHHHHHHHHHhhcCCeEEEEEEc
Confidence 46666 66 999997764333322 3789999999999999999988654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=95.34 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=77.7
Q ss_pred hcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeE
Q 006834 215 LIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDM 289 (629)
Q Consensus 215 lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDl 289 (629)
.+...++. +|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+...|...++...+.||.
T Consensus 66 ~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 66 ALEPDPPE--RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HhCCCCcC--EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence 34444444 899999999999999988632222567889999999988764 32 467777777666655567999
Q ss_pred EEecC------cccc-------ccc--------CHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 290 AHCSG------CLIP-------WYM--------YDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 290 V~~s~------~L~h-------~~~--------d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
|++.. ++.+ +.+ ....+|..+.++|||||+++.++...
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99621 1111 110 12358999999999999999987544
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=92.13 Aligned_cols=96 Identities=10% Similarity=0.047 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC--cEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI--LTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~--~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
..+|||+|||+|.++..++++.. ....++++|+++.+++.|+++...+.+...|....++ +++||+|+++.-+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 34899999999999999887521 2346888999999999999887678888888876554 56899999987664222
Q ss_pred cC-----------HHHHHHHHHhcccCCcE
Q 006834 301 MY-----------DGLYLLEVDRVLRPGGY 319 (629)
Q Consensus 301 ~d-----------~~~~L~el~RvLKPGG~ 319 (629)
.. ...++..+.+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 23478888887777775
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=100.99 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=64.5
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHH----hhccc---ceec-cccccCCCCC-cccceeecc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIY----ERGLI---GTYQ-DWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----ergli---~~~~-~~~e~f~~yp-~t~Dl~H~~ 549 (629)
-..|||+|||.|+++.+|+++ +. +|+.+|.++.++..+. ++|+. .... |.. .+ ++| .+||+|.+.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~-~~~~~~FD~V~s~ 193 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADAL-NQ-PFEDGQFDLVWSM 193 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcc-cC-CCCCCCccEEEEC
Confidence 356999999999999999875 32 3444454545555443 34652 2222 222 22 344 899999986
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
..+.... +...+|.||-|+|||||.++|.+
T Consensus 194 ~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP---DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 5554333 46889999999999999999964
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=95.79 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=75.0
Q ss_pred hhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccc
Q 006834 471 IDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASG 550 (629)
Q Consensus 471 ~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~ 550 (629)
++..+....-..|||+|||.|.++.+|.++.- ...|+.+|.++.++..+.++++ .+.+.=.+.+. ...+||+|++..
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~ 97 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNA 97 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEeh
Confidence 44444433345799999999999999987610 1245666777789999998875 33331112231 237999999988
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+|-... +.+.+|.++-|+|||||++++..
T Consensus 98 ~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 98 ALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 775433 45889999999999999999963
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-07 Score=99.01 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=80.8
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPA 284 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd 284 (629)
.+..++...++. +|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+.+.|...++ +..
T Consensus 228 ~~~~~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 228 IVPLLMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh
Confidence 344444444444 899999999999999988632223567789999999999865 33 3677788877766 456
Q ss_pred CCeeEEEecC-c--cccccc------------------CHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 285 RAFDMAHCSG-C--LIPWYM------------------YDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 285 ~sFDlV~~s~-~--L~h~~~------------------d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
++||.|++.. | +-.+.. ....+|.++.+.|||||+++.++...
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 7899999621 1 111111 12357899999999999999997544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-07 Score=90.93 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=77.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
.++|||||+|.|.++..++++.+.. .++..|. ++.++.+++ ..++.+..+|.. -++|. +|+++..++||+|.++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNL-RATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDE 174 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTS-EEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HH
T ss_pred ccEEEeccCcchHHHHHHHHHCCCC-cceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchH
Confidence 4589999999999999999987643 4566798 778888887 667999988887 56665 9999999999999854
Q ss_pred H-HHHHHHHHhcccCC--cEEEEEeC
Q 006834 303 D-GLYLLEVDRVLRPG--GYWILSGP 325 (629)
Q Consensus 303 ~-~~~L~el~RvLKPG--G~liis~P 325 (629)
. ..+|+++++.|+|| |.++|..+
T Consensus 175 ~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 175 DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 3 56999999999999 99999753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.5e-07 Score=92.49 Aligned_cols=115 Identities=9% Similarity=0.066 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRL 280 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~L 280 (629)
.|.+.+...+... ..+++|||||||.|.++..+++... ...++++|+++++++.|++.. .++.+.++|....
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 3454443333222 2345899999999999999988754 346788899999999999752 3467777776432
Q ss_pred -CCCCCCeeEEEecCcc-ccccc--CHHHHHHHHHhcccCCcEEEEE
Q 006834 281 -PYPARAFDMAHCSGCL-IPWYM--YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 281 -p~pd~sFDlV~~s~~L-~h~~~--d~~~~L~el~RvLKPGG~liis 323 (629)
.-..++||+|++...- ...+. ....+++++.++|+|||.+++.
T Consensus 130 l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 130 IAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 2224689999974311 11111 1368999999999999999996
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.5e-08 Score=84.86 Aligned_cols=96 Identities=26% Similarity=0.417 Sum_probs=69.5
Q ss_pred EEEeecccchhHHhhhhC--CCeEEEEecCCCCCCCchHHHHhhc----c---cceec-cccccCCCCCcccceeecccc
Q 006834 482 NVMDMNAYLGGFAAAMSK--YPVWVMNVVPFHSNPDTLGAIYERG----L---IGTYQ-DWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~--~~v~~mnv~~~~~~~~~l~~~~erg----l---i~~~~-~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
.|||+|||+|.++.+|++ .+. .|+.+|.++.+++.+.++- + |..++ |+ ......+..||+|.+.+
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~- 78 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG- 78 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS-
T ss_pred EEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC-
Confidence 589999999999999998 554 3455566667888877765 3 44444 33 22244556799999988
Q ss_pred cc--ccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 552 FS--IYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 552 fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|+ .+-+......+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 42 22222456779999999999999999975
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=96.05 Aligned_cols=114 Identities=21% Similarity=0.315 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c--cceeccc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L--IGTYQDW 532 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l--i~~~~~~ 532 (629)
+.|++.+..... +.++. .|||++||+|-.+..|++.-----.|+.+|-++++|..+.+|- + |-..+.=
T Consensus 33 ~~wr~~~~~~~~----~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~d 106 (233)
T PF01209_consen 33 RRWRRKLIKLLG----LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGD 106 (233)
T ss_dssp ----SHHHHHHT------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-B
T ss_pred HHHHHHHHhccC----CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcC
Confidence 678876654322 33444 6999999999999988764111125666777789999998873 2 3333333
Q ss_pred cccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 533 CEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 533 ~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.|.++ || .+||.+=+...+- +-.+.+..|.||-|||||||.++|-|
T Consensus 107 a~~lp-~~d~sfD~v~~~fglr---n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 107 AEDLP-FPDNSFDAVTCSFGLR---NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TTB---S-TT-EEEEEEES-GG---G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhc-CCCCceeEEEHHhhHH---hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 34544 55 9999977644333 23567999999999999999999865
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.6e-07 Score=90.42 Aligned_cols=123 Identities=19% Similarity=0.226 Sum_probs=82.5
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCee
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFD 288 (629)
++.|.+.|...++ ...|.|+|||.+.++. .....+.++ |+.+ .+-.+..+|+.++|+++++.|
T Consensus 168 ld~ii~~ik~r~~-~~vIaD~GCGEakiA~---~~~~kV~Sf---DL~a----------~~~~V~~cDm~~vPl~d~svD 230 (325)
T KOG3045|consen 168 LDVIIRKIKRRPK-NIVIADFGCGEAKIAS---SERHKVHSF---DLVA----------VNERVIACDMRNVPLEDESVD 230 (325)
T ss_pred HHHHHHHHHhCcC-ceEEEecccchhhhhh---ccccceeee---eeec----------CCCceeeccccCCcCccCccc
Confidence 3444444444333 3478999999998765 222234455 6641 234567789999999999999
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeeccc
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 365 (629)
++++...| +..+...++.|++|+|+|||.|+|..-... + .....+......++|......
T Consensus 231 vaV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAEv~SR----f-----------~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 231 VAVFCLSL--MGTNLADFIKEANRILKPGGLLYIAEVKSR----F-----------SDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred EEEeeHhh--hcccHHHHHHHHHHHhccCceEEEEehhhh----c-----------ccHHHHHHHHHHcCCeeeehh
Confidence 99975554 444788999999999999999999742111 1 112336677788888765433
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-06 Score=87.67 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=85.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp 281 (629)
+..|...+...+++ +|||.|.|+|.++.+|+.. +..+ .++.+|+.++..+.|+++ + ..+.+...|....-
T Consensus 83 ~~~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 83 AGYIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCc-eEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 44666777777777 9999999999999999963 3322 456669999999999976 2 23667777776665
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+++ .||+|+. .++ +|-.++..+.++|+|||.+++..|..+
T Consensus 160 ~~~-~vDav~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 160 DEE-DVDAVFL-----DLP-DPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccc-ccCEEEE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 554 8999985 444 788899999999999999999987553
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=92.34 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=74.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-C-CCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-P-YPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p-~pd~sFDlV~ 291 (629)
+++||+||||.|..+.+++++. .+..++.+|+++.+++.|++.. .++.+...|.... . .++++||+|+
T Consensus 92 pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 5689999999999999999873 3346777899999999998742 3577788776432 1 2357899999
Q ss_pred ecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
+-..- +.... ...+++.+.++|+|||.++...
T Consensus 171 ~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 84432 22211 2468999999999999997753
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.7e-06 Score=85.58 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=67.4
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeE-EEEecCCCCC-----C
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAM-IGVISSKRLP-----Y 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~-~~v~d~~~Lp-----~ 282 (629)
...+.+.+... -.+.+|||+|||+|.|+..++++|.. .++++|+++.|+....+....+. +...+...+. .
T Consensus 63 L~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 44444444321 23448999999999999999999754 46778999988887554444432 3333433222 1
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.-..||+++++..+ .|..+.++|+| |.+++..
T Consensus 140 d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 140 DFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 22367877776644 47889999999 7777654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.6e-07 Score=98.68 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=79.2
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--C
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP--Y 282 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp--~ 282 (629)
..+...+...++. +|||+|||+|..+..+++.......++++|+++.+++.++++ +. ++.+...|...++ +
T Consensus 240 ~lv~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 240 MLVAPALDPKGGD--TVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 3444555544444 899999999999999998631123577889999999998764 32 4677888876653 3
Q ss_pred CCCCeeEEEecCc------ccc-----cccC----------HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 283 PARAFDMAHCSGC------LIP-----WYMY----------DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 283 pd~sFDlV~~s~~------L~h-----~~~d----------~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+ ++||+|++..- +.+ |... ...+|.++.++|||||.++.++..
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 78999997421 111 1101 135799999999999999988643
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=90.37 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-CCCCCCeeEEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-PYPARAFDMAH 291 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p~pd~sFDlV~ 291 (629)
.+++||+||||+|.++..+++... ...++.+|+++++++.|++.. ..+.+...|.... ....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 355999999999999999988752 235778899999999998742 2355665554331 22257899999
Q ss_pred ecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
+.... +.... ...+++.+.++|+|||.+++..
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 85542 22211 3578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-07 Score=96.02 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=70.3
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----ccc---ceeccccccCCCC-Ccccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLI---GTYQDWCEAFSTY-PRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli---~~~~~~~e~f~~y-p~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+. .+++.-.+.+..+ +++||+|.+..++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 4799999999999999998863 566667776788877664 442 2222111223333 4899999998887
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.... +...+|.++.|+|||||.+++..
T Consensus 123 ~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 123 EWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 6443 44789999999999999998863
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=83.51 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=81.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
+.........|...+++ +++|||||+|+.+..++..+. ...++++|-++++++..+++ + .++.++.+++...
T Consensus 20 ~EIRal~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 33444445556666666 999999999999999995544 33567779999999888754 2 4577777776443
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
--...+||.|+....- ....+|+.+...|||||.+++..
T Consensus 97 L~~~~~~daiFIGGg~-----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 97 LPDLPSPDAIFIGGGG-----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred hcCCCCCCEEEECCCC-----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 2122279999987763 56789999999999999999974
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.4e-06 Score=89.61 Aligned_cols=97 Identities=23% Similarity=0.237 Sum_probs=70.7
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
+|||+|||+|..+..++..... ..++++|+|+.+++.|+++ +. ++.+...|... +. .++||+|+|+.-...-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCC
Confidence 7999999999999999998764 3567889999999999865 32 23333332211 22 3489999998766444
Q ss_pred c----------cCH--------------HHHHHHHHhcccCCcEEEEEe
Q 006834 300 Y----------MYD--------------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 300 ~----------~d~--------------~~~L~el~RvLKPGG~liis~ 324 (629)
. .+| ..++.++.+.|+|||.+++..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 3 011 147888999999999999974
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=91.35 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=74.9
Q ss_pred CCeEEEeCCCCc----hHHHHHHHcC---CcEeEEEeecCcHHHHHHHHHc--------C--------------------
Q 006834 223 IRTAVDTGCGVA----SWGAYLLKRD---ILTMSFARRDTHEAQVQFALER--------G-------------------- 267 (629)
Q Consensus 223 ~~~VLDIGCGtG----~~a~~La~~g---~~~v~i~gvDiS~~~i~~A~er--------g-------------------- 267 (629)
.-+|+..||++| +++..|.+.. ...+.|.|+|+|+.+++.|++- +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 358999999999 4555455532 1135789999999999999842 0
Q ss_pred --------CCeEEEEecCCCCCCC-CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 268 --------VPAMIGVISSKRLPYP-ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 268 --------~~~~~~v~d~~~Lp~p-d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
..+.|.+.+....+++ .+.||+|+|.++++|+... ...++..+.+.|+|||+|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0134556666554443 5789999999999888644 567999999999999988775
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-06 Score=85.09 Aligned_cols=98 Identities=23% Similarity=0.344 Sum_probs=73.7
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC-CC--CCCCCeeEEEecCcc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR-LP--YPARAFDMAHCSGCL 296 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~-Lp--~pd~sFDlV~~s~~L 296 (629)
.+||||||.|.+...++...+. ..+.|+|+....+..|.++ + .++.+..+|+.. +. ++++++|.|+..+.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 7999999999999999998775 3678889999998887754 3 578888888776 32 567999999986644
Q ss_pred cccccC--------HHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMY--------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d--------~~~~L~el~RvLKPGG~liis~ 324 (629)
+|+.. ...++..+.++|+|||.|.+.+
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 55532 1369999999999999999984
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.2e-07 Score=93.86 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=68.2
Q ss_pred eeEEEeecccchhHHhhhhCC-C-eEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCC-cccceeecccccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-P-VWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
-.+|||+|||.|.+++.|.+. + .-..+|+.+|.++.++..+.++.- +...+.-.+.+ +++ .+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~--~~~-- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIR--IYA-- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEE--ecC--
Confidence 356999999999999998754 1 111357788888889998887742 22222111222 344 79999986 232
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHH
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTVE-MLVKIRSI 593 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~ 593 (629)
+..+.|+.|+|||||++|+..+.. .+..++.+
T Consensus 161 ------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 ------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 234689999999999999976542 23344443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.9e-06 Score=96.33 Aligned_cols=101 Identities=16% Similarity=0.023 Sum_probs=75.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc------------CCCeEEEEecCCCC-CCCCCCee
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER------------GVPAMIGVISSKRL-PYPARAFD 288 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er------------g~~~~~~v~d~~~L-p~pd~sFD 288 (629)
++++|||+|||+|..+..++++.. +..++.+|+++++++.|+++ .+++++...|..+. ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 356899999999999999998642 23677889999999999983 13577777776553 23357899
Q ss_pred EEEecCcccccccC-----HHHHHHHHHhcccCCcEEEEEe
Q 006834 289 MAHCSGCLIPWYMY-----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 289 lV~~s~~L~h~~~d-----~~~~L~el~RvLKPGG~liis~ 324 (629)
+|++.... +.... ...+++.+.+.|||||.+++..
T Consensus 376 vIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99997533 22111 2468999999999999999864
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.4e-07 Score=93.54 Aligned_cols=115 Identities=16% Similarity=0.210 Sum_probs=78.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH----HhhcccceeccccccCCC--CCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI----YERGLIGTYQDWCEAFST--YPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~ergli~~~~~~~e~f~~--yp~t~Dl~H~~~~fs~~ 555 (629)
+|||+|||.|.++.+|++++. .|..+|.++..+..+ .+.|+ . ++--+..+.. .+..||+|-+..+|...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhC
Confidence 599999999999999998864 566667766666654 34465 2 1111122222 36899999998877543
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe---CH-----------HHHHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD---TV-----------EMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~-----------~~~~~~~~~~~~l~w~~~~~ 604 (629)
+.-+++.++.+|.|+|+|||++++-. .. -.-..++++++. |++..+
T Consensus 198 -~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 -NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 33467889999999999999966531 11 124567777776 887655
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-06 Score=82.92 Aligned_cols=130 Identities=11% Similarity=0.063 Sum_probs=85.2
Q ss_pred CCeeeecCCCCCCCCchHHHHHHHHhhcCc-cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 189 GHRFRFPGGGTTFPNGADAYIDNINELIPL-TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~-~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
|-++..|.+. .+....+...+.+.+.+.. ..+ .+|||+|||+|.++..++.++.. .++++|.++.+++.|+++
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~~~~--~~vLDl~~GsG~l~l~~lsr~a~--~V~~vE~~~~a~~~a~~Nl 96 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPVIVD--ARCLDCFAGSGALGLEALSRYAA--GATLLEMDRAVAQQLIKNL 96 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhhcCC--CEEEEcCCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHH
Confidence 3444444322 2344566666666666543 233 38999999999999877766643 567789999999988764
Q ss_pred ---CC-CeEEEEecCCC-CCCCCCCeeEEEecCcccccccCHHHHHHHHHh--cccCCcEEEEEeC
Q 006834 267 ---GV-PAMIGVISSKR-LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDR--VLRPGGYWILSGP 325 (629)
Q Consensus 267 ---g~-~~~~~v~d~~~-Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~R--vLKPGG~liis~P 325 (629)
+. ++.+...|... ++...++||+|++..-+.. .-....+..+.. +|+|+|.++++.+
T Consensus 97 ~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 97 ATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 32 47777777654 2223457999999885421 113445555544 4899999999854
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.8e-05 Score=82.92 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=81.3
Q ss_pred eEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh----cc-----cceeccccccCCCCC-cccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER----GL-----IGTYQDWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er----gl-----i~~~~~~~e~f~~yp-~t~Dl~H~~ 549 (629)
..|||+|||+|-.+.+|+++. - ..|..+|.+...+..+.+. +. +.++ +...++..+ .+||+|-|+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~--~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~~~~~fDlIlsN 305 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGVEPFRFNAVLCN 305 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccCCCCCEEEEEEC
Confidence 369999999999999998752 1 2344455554566555432 11 2223 233445454 589999987
Q ss_pred ccccccC--CCcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 550 GVFSIYQ--DRCDITNILLEMDRILRPEGTVIFRD--TVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 550 ~~fs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
--|-..+ ..-....++.++-|+|+|||.++|-- ..++..+|+++.. ++.++... .+-+||-++|
T Consensus 306 PPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~----~kf~vl~a~k 373 (378)
T PRK15001 306 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 373 (378)
T ss_pred cCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccC----CCEEEEEEEe
Confidence 6664322 11123568889999999999999963 2345667777654 33443322 3678888888
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-06 Score=84.64 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=88.8
Q ss_pred CCcchhhchh--hHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh-
Q 006834 447 SGITAEKLRE--DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER- 523 (629)
Q Consensus 447 ~~~~~~~f~~--d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er- 523 (629)
+|+..+.|.. +...|+..+..-.-..-.+..+. .|||+|||.|.++.+++..---..+|+.+|.++.+++.+.++
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~~l~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~ 85 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRALALSKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNA 85 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHHHHHHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 4555666765 33577766643221001244444 599999999999887654200012345556655566654433
Q ss_pred ---cc---cceec-cccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHh
Q 006834 524 ---GL---IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITE 595 (629)
Q Consensus 524 ---gl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~ 595 (629)
|+ +.++. |..+.....+..||++.+.+ ....++.+|.++.|+|+|||.+++. -..+.+.++...++
T Consensus 86 ~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 159 (198)
T PRK00377 86 EKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALE 159 (198)
T ss_pred HHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHH
Confidence 43 22222 22222223346799877632 2246788999999999999999983 34556777777777
Q ss_pred cCCCeEEEe
Q 006834 596 GMRWKSQIM 604 (629)
Q Consensus 596 ~l~w~~~~~ 604 (629)
.+.++..+.
T Consensus 160 ~~g~~~~~~ 168 (198)
T PRK00377 160 NIGFNLEIT 168 (198)
T ss_pred HcCCCeEEE
Confidence 776665533
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-06 Score=94.55 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC-
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR- 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~- 279 (629)
+.+.+.+.+.+...++. +|||+|||+|.++..|++.+. .++++|+|++|++.|+++ +. ++.+..+|...
T Consensus 283 e~l~~~vl~~l~~~~~~--~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPGD--RVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCCC--EEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 45566666666544444 899999999999999998864 456779999999999864 32 57888888653
Q ss_pred ---CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 280 ---LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 280 ---Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+++.+++||+|++...... ....+..+.+ ++|++.++++-.+.
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~g----~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRAG----AAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCcC----hHHHHHHHHh-cCCCeEEEEEeChH
Confidence 3355678999998664321 2345555555 69999999985443
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.5e-07 Score=95.66 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=63.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH--HHhhcc-----cceeccccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA--IYERGL-----IGTYQDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~--~~ergl-----i~~~~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
+.|||+|||.|.++.+|++.+- -.|+.+|.+..++.. +..+.+ |-+...=.+.++. +.+||+|+|.+++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 5699999999999999988742 124555655344422 111211 2222211133333 68999999988764
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+.-+...+|.++.|+|||||.+||.
T Consensus 201 ---H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 ---HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ---ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3456788999999999999999986
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-07 Score=89.68 Aligned_cols=94 Identities=19% Similarity=0.345 Sum_probs=65.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH----hhcc--ccee-ccccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY----ERGL--IGTY-QDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----ergl--i~~~-~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++.+|++++. +|..+|.++.+++.+. ++|+ +-.. .|+.+ + +++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 3599999999999999998853 5566677656665543 3454 2222 23321 2 2357899999877764
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
.. +..+++.++.+|.|+|||||++++
T Consensus 107 ~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 32 334578899999999999999655
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.8e-05 Score=81.43 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=80.7
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcccceeccccccCCCCCcccceeecccccccc-
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIY- 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~- 555 (629)
.|||+|||+|.++.+|.++ +- ..|..+|.+...+..+.+ .|+-+.++ +...++..+..||+|-++--|-..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~--~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPK--IRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 4999999999999999876 21 124445555455554432 34433222 333445456899999997766321
Q ss_pred -CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 556 -QDRCDITNILLEMDRILRPEGTVIFRDTV--EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 556 -~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
...-..+.++.++-|.|+|||.++|-.+. .+-..+++..... ++ +.++ .+-||+-|+|.
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~~-la~~-----~~f~v~~a~~~ 337 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--EV-LAQT-----GRFKVYRAIMT 337 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--EE-EEeC-----CCEEEEEEEcc
Confidence 11234577999999999999999886432 2344555555432 22 2222 36788888874
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=86.32 Aligned_cols=133 Identities=17% Similarity=0.259 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHH----hhcc--cceecc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIY----ERGL--IGTYQD 531 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~----ergl--i~~~~~ 531 (629)
..|++++-.-..++..+. + .+|||+|||+|.++..|+.. +- ..|..+|.++.++..+. +.|+ +.+++.
T Consensus 25 ~~~~~~~~d~i~~~~~~~-~--~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD-G--KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC-C--CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec
Confidence 466766644333333343 3 46999999999888877532 11 23555566655555443 3455 344441
Q ss_pred ccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC-CeEEEe
Q 006834 532 WCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMR-WKSQIM 604 (629)
Q Consensus 532 ~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~-w~~~~~ 604 (629)
=.+.+ ....+||+|-+++ -.+++.++.++.|+|||||.+++.+.......+..+.++++ |.....
T Consensus 100 d~~~~-~~~~~fD~I~s~~-------~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 100 RAEDF-QHEEQFDVITSRA-------LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred chhhc-cccCCccEEEehh-------hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 11222 2347999998854 13578899999999999999999887776777777766533 444433
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-07 Score=89.37 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=76.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH----hhccc-cee-ccccccCCCCCcccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY----ERGLI-GTY-QDWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----ergli-~~~-~~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
.+|||+|||+|.++.+|++++- .|..+|.++.++..+. +.|+- ... .|. .. ..++.+||+|.+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~-~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NA-AALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hh-ccccCCCCEEEEeccccc
Confidence 3699999999999999998753 5666777767777654 33541 111 121 11 124578999998777753
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------HH---HHHHHHHHHhcCCCeEEEee
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRDT-----------VE---MLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------~~---~~~~~~~~~~~l~w~~~~~~ 605 (629)
. +.-+++.++.++.|+|+|||++++-+. .. ....|.+.+.. |+...++
T Consensus 107 ~-~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~ 168 (195)
T TIGR00477 107 L-QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYN 168 (195)
T ss_pred C-CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEee
Confidence 3 233678899999999999999554310 11 24556666654 7766554
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=86.99 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=64.1
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++. +- ..+|+.+|.+++++..+.++ ++ +.+++.=.+.+ ++| .+||+|++...+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGP-EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEeccc
Confidence 36999999999999998764 10 01344455555666655543 33 22232111222 245 799999987655
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.... +...+|.|+-|+|||||.+++.+.
T Consensus 125 ~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4332 457899999999999999998753
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=83.09 Aligned_cols=133 Identities=24% Similarity=0.223 Sum_probs=85.3
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCCCcccceeecccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
-.+|||+|||.|.++.++++..- -.+|..+|.++.+++.+.+ .|+ +-++. ......++..||++.+.+..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCCc-
Confidence 34699999999999998876410 1234455555456655543 233 22222 11223456789999885532
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCeE-EEee------------cCCCCCCCceEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRD-TVEMLVKIRSITEGMRWKS-QIMD------------HESGPFNPEKILFA 619 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~l~w~~-~~~~------------~e~~~~~~e~~l~~ 619 (629)
..++.++.++.|+|+|||.+++.+ ..+...++.++++...+.. .+.. +--+|..|--++++
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQVSSLTPLGAGHYFKPNNPTFIISC 182 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEEEEeeeEcCcceeeccCCCEEEEEE
Confidence 357889999999999999999976 4556677778888877753 2111 11345566667777
Q ss_pred Ee
Q 006834 620 AK 621 (629)
Q Consensus 620 ~K 621 (629)
+|
T Consensus 183 ~~ 184 (187)
T PRK08287 183 QK 184 (187)
T ss_pred Ec
Confidence 77
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-06 Score=83.34 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=87.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.|||+|||+|.++..|.+.+- .|+.+|.++.++..+.++ |+ +.+++ |+.+ ..+.+||+|-++--|-..
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLPL 95 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCCC
Confidence 599999999999999988754 456666665666665443 22 22232 3333 235799998876554211
Q ss_pred C------------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCCeEEEeecCCCCCCCceE
Q 006834 556 Q------------------DRCDITNILLEMDRILRPEGTVIFRDTVEM-LVKIRSITEGMRWKSQIMDHESGPFNPEKI 616 (629)
Q Consensus 556 ~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~ 616 (629)
. .+..++.+|.++.|+|+|||.+++.+.... ...+.+.++...++.++.....= +-.-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~---~~~~ 172 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGL---FFEE 172 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeec---CceE
Confidence 1 122367799999999999999999876554 66777888888888876644321 3345
Q ss_pred EEEEec
Q 006834 617 LFAAKT 622 (629)
Q Consensus 617 l~~~K~ 622 (629)
|++.|-
T Consensus 173 ~~~~~~ 178 (179)
T TIGR00537 173 LFAIKA 178 (179)
T ss_pred EEEEEe
Confidence 555553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=86.82 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=79.9
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCC-CeEEEEecCCCCC---CCCCCeeEEEecCcc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGV-PAMIGVISSKRLP---YPARAFDMAHCSGCL 296 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~-~~~~~v~d~~~Lp---~pd~sFDlV~~s~~L 296 (629)
.+||||||.|.+...+|++++.. .+.|+|+....+..|.+ .++ ++.+...|+..+- +++++.|-|+..+.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~-nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEK-NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC-CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 79999999999999999999865 78888999888777764 477 8888888875542 456699999987754
Q ss_pred cccccCH--------HHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMYD--------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d~--------~~~L~el~RvLKPGG~liis~ 324 (629)
+|+... ..++..+.++|+|||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 776432 369999999999999999984
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=86.91 Aligned_cols=97 Identities=12% Similarity=0.026 Sum_probs=71.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-C-----CCCCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-P-----YPARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p-----~pd~sFDlV 290 (629)
.++|||+|||+|..+..|+..-.....++++|+++++++.|+++ +. .+.+..+|.... + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 34899999999998888877533233567789999999999865 32 467777776442 2 124689999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
++..- ......++.++.++|||||.+++.
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 87431 123356899999999999998886
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.1e-07 Score=96.67 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=71.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc--ccceeccccccCCCCCcccceeecccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG--LIGTYQDWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg--li~~~~~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
+.++. .|||+|||.|+++..|++. ++ .|+.+|.++.++..+.+|. + . .+-.+..+...+.+||+|.+.++
T Consensus 165 l~~g~--rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~-v~~~~~D~~~l~~~fD~Ivs~~~ 237 (383)
T PRK11705 165 LKPGM--RVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-P-VEIRLQDYRDLNGQFDRIVSVGM 237 (383)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-e-EEEEECchhhcCCCCCEEEEeCc
Confidence 44554 5999999999999999875 54 4566666667888887764 2 1 11112233334689999999887
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|..-. .-+.+.++.++.|+|||||.+++.+
T Consensus 238 ~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 238 FEHVG-PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hhhCC-hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 75432 2356789999999999999999963
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-06 Score=92.88 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=63.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH-Hhhccc---ceeccccccCCCCC--cccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI-YERGLI---GTYQDWCEAFSTYP--RTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~ergli---~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~ 554 (629)
+.|||+|||.|.++.+|+..+. -.|+.+|.+..++... ..|.++ +-.+-....+...| .+||+|-|.+++-.
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence 5799999999999999887754 1355666554454321 111111 11111112222333 58999999887643
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+-+...+|.|+.|+|||||.+|+.
T Consensus 201 ---~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 ---RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ---cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 456789999999999999999986
|
Known examples to date are restricted to the proteobacteria. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.1e-07 Score=90.05 Aligned_cols=94 Identities=21% Similarity=0.381 Sum_probs=66.2
Q ss_pred EEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHh----hcc---cceec-cccccCCCCCcccceeecccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYE----RGL---IGTYQ-DWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----rgl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
.|||+|||.|+++..+++. ++ +|..++.+++++..+.+ .|+ +.++. |..+. ++|.+||+|++.++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 5999999999999998764 22 33444445566665555 355 33333 22111 35689999999777
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
|.... +.+.+|.++.|+|||||++++.+.
T Consensus 77 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 77 IHHIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHhCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 76543 468899999999999999999864
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-06 Score=85.88 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=69.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC---C----eE-----------------------
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV---P----AM----------------------- 271 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~---~----~~----------------------- 271 (629)
.+..+|||||..|.++..+++..-. -.+.|+|+++..|+.|++... . +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3558999999999999999986421 246788999999999996521 0 00
Q ss_pred ----------E----EEecC-CCCCCCCCCeeEEEecC----cccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 272 ----------I----GVISS-KRLPYPARAFDMAHCSG----CLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 272 ----------~----~v~d~-~~Lp~pd~sFDlV~~s~----~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
| .+.+. .-+.+....||+|+|.. +...|.++ ...+++.+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 01111 11223456899999833 22344423 356999999999999999998
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.2e-07 Score=90.27 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=104.9
Q ss_pred hcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec-cccccCC--CCCcccceeec
Q 006834 472 DGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAFS--TYPRTYDLIHA 548 (629)
Q Consensus 472 ~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f~--~yp~t~Dl~H~ 548 (629)
+.....+..|.+||+|||+|-+|-+|.+. +--+..+|-+.|||..+.|+|+.-++. .=-..|. .=++-||||-+
T Consensus 118 I~~~~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 118 IGKADLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred HHhccCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh
Confidence 34456677999999999999999999765 123456688889999999999966432 1112365 45689999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCeEEEe-----ecC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------------EMLVKIRSITEGMRWKSQIM-----DHE 607 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~-----~~e 607 (629)
.-||.... +++.+|.=+++.|.|||.|+|+... -....|...+.+--.+++-+ -.+
T Consensus 195 aDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 195 ADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred hhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 88888654 5699999999999999999998221 01455777777777776522 223
Q ss_pred CCCCCCceEEEEEec
Q 006834 608 SGPFNPEKILFAAKT 622 (629)
Q Consensus 608 ~~~~~~e~~l~~~K~ 622 (629)
.|.-.+..+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 344466777788775
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.1e-07 Score=95.26 Aligned_cols=96 Identities=10% Similarity=0.159 Sum_probs=70.8
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c---cceeccccccCCCCCcccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L---IGTYQDWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l---i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
.|||+|||.|.++..|++.+. +|..+|.+..++.++.++. + |...+.=.+.+...+++||+|=|.+++..
T Consensus 134 ~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 699999999999999987753 5677788778888887652 2 22222112333333379999988777654
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.. +.+.+|.|+-|+|||||.++|.+.
T Consensus 211 v~---d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 211 VA---NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred cC---CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 33 568999999999999999999853
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.1e-06 Score=85.31 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCCc----hHHHHHHHcCC----cEeEEEeecCcHHHHHHHHH---------cCC----------------
Q 006834 222 NIRTAVDTGCGVA----SWGAYLLKRDI----LTMSFARRDTHEAQVQFALE---------RGV---------------- 268 (629)
Q Consensus 222 ~~~~VLDIGCGtG----~~a~~La~~g~----~~v~i~gvDiS~~~i~~A~e---------rg~---------------- 268 (629)
..-+|.-+||++| +++..|.+.+. ..+.|.++|++...++.|++ ++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 66666666654 26789999999999999972 111
Q ss_pred ---------CeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 269 ---------PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 269 ---------~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
.+.|...+...-++..+.||+|+|-++|+.+... ...++..++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1334444443333245679999999999888754 457999999999999999985
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=89.04 Aligned_cols=124 Identities=17% Similarity=0.197 Sum_probs=79.4
Q ss_pred hcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCC--CCcccceeec
Q 006834 472 DGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFST--YPRTYDLIHA 548 (629)
Q Consensus 472 ~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~--yp~t~Dl~H~ 548 (629)
+..+....-.+|||+|||.|.++..|++.. =.-+|+.+|.++.++..+.++-- +.+.. ..+.. .+.+||+|++
T Consensus 24 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~~ 99 (258)
T PRK01683 24 LARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVE---ADIASWQPPQALDLIFA 99 (258)
T ss_pred HhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEE---CchhccCCCCCccEEEE
Confidence 333333344679999999999999998651 01345666776678877766621 22222 12222 2379999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----HHHHHHHHHHhcCCCeEE
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----EMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~~~~~~~~~~~~l~w~~~ 602 (629)
+.+|.... +...+|.++-|+|||||.+++.-.. .....++++.....|...
T Consensus 100 ~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 100 NASLQWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred ccChhhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 87775433 4678999999999999999996321 122334555555556543
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.7e-06 Score=84.00 Aligned_cols=140 Identities=19% Similarity=0.286 Sum_probs=90.9
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc----cceeccccccCCC-CC-cccceee
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL----IGTYQDWCEAFST-YP-RTYDLIH 547 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl----i~~~~~~~e~f~~-yp-~t~Dl~H 547 (629)
.|...++++++++|||.|-|-+.|+.+ +-.++.+|.++.-+..+.+|=- |...+ ..++. .| .+|||||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~---~dvp~~~P~~~FDLIV 111 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQ---ADVPEFWPEGRFDLIV 111 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEE---S-TTT---SS-EEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEE---CcCCCCCCCCCeeEEE
Confidence 478899999999999999999999988 2344455555456666666532 22222 22222 35 9999999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCCeEEEeecCCCCCCCceEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE----------MLVKIRSITEGMRWKSQIMDHESGPFNPEKIL 617 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l 617 (629)
+..|+-...+.-++..++..+...|+|||.+|+-+-.+ --+.|.++++..-=++.-+.-..+ ...|.-|
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~-~~~~~~~ 190 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGG-SPNEDCL 190 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-S-STTSEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCC-CCCCceE
Confidence 99999888877778889999999999999999964332 145566666665555554433322 2456666
Q ss_pred EEE
Q 006834 618 FAA 620 (629)
Q Consensus 618 ~~~ 620 (629)
+++
T Consensus 191 ~~~ 193 (201)
T PF05401_consen 191 LAR 193 (201)
T ss_dssp EEE
T ss_pred eee
Confidence 654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=85.57 Aligned_cols=99 Identities=24% Similarity=0.304 Sum_probs=67.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh--cccceeccccccCC--CCC-cccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER--GLIGTYQDWCEAFS--TYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er--gli~~~~~~~e~f~--~yp-~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||.|.++..+++.--=.-+++.+|.++..+..+.++ +.....+-.+..+. .++ .+||+||+..+|...
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~ 100 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHL 100 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhcc
Confidence 4699999999999999876510012455566666778888776 22111111112222 233 799999998877654
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. +.+.++.++-|+|||||++++.+
T Consensus 101 ~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 101 E---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred C---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 4 46889999999999999999865
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-06 Score=89.65 Aligned_cols=99 Identities=9% Similarity=0.145 Sum_probs=68.4
Q ss_pred eEEEeecccchhHHhhhhCCCeE-EEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCC-cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVW-VMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~-~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
.+|||+|||.|.++..|+++-.. -.+++.+|.+++++..+.++ +. +.+.+ ..+..+| ..+|++.+..+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---CChhhCCCCCCCEEeeecc
Confidence 35999999999999888764100 13556666666788887665 22 22232 4444555 56898887666
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+..... -+...+|.++.|+|+|||.++++|.
T Consensus 132 l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 654332 2356799999999999999999975
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.7e-06 Score=86.66 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=76.0
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP 281 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp 281 (629)
.+.+.+.+++.... +.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +. ++.|.++|...+.
T Consensus 160 ~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 160 QLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred HHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 33444455554322 34899999999999999999865 456779999999999864 33 5888888876654
Q ss_pred C-CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 282 Y-PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 282 ~-pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
. ..+.||+|++..... .....+.++..-++|++.++++..+.
T Consensus 235 ~~~~~~~D~Vv~dPPr~----G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 235 TAQGEVPDLVLVNPPRR----GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred HhcCCCCeEEEECCCCC----CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 2 345799999875321 11222333344478888888885443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-06 Score=88.23 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=76.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceeccccccCCCC-Ccccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQDWCEAFSTY-PRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~~~~e~f~~y-p~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||+|..+.++++.+. -.|+.+|.++..+..+.++. +-......+...... +..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 4699999999999988877653 35666677666777666542 211122222223333 37899999865422
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~ 604 (629)
.+..++-++.|+|||||+++++.-. +....+.+.+++. |+....
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 3457889999999999999998653 3456666766665 766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=82.74 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=79.3
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp 281 (629)
+..|...+...+|+ +|||.|.|+|+++..|+.. +..+ .+...|.+++.++.|+++ + .++.+...|...-.
T Consensus 29 ~~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 29 ISYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 55677777887777 9999999999999999974 3322 345559999999999865 3 35788888876544
Q ss_pred CC---CCCeeEEEecCcccccccCHHHHHHHHHhcc-cCCcEEEEEeCCC
Q 006834 282 YP---ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVL-RPGGYWILSGPPI 327 (629)
Q Consensus 282 ~p---d~sFDlV~~s~~L~h~~~d~~~~L~el~RvL-KPGG~liis~P~~ 327 (629)
|. ++.||.|+. .++ +|-.++..+.++| ||||.++...|.+
T Consensus 106 ~~~~~~~~~DavfL-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 106 FDEELESDFDAVFL-----DLP-DPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp -STT-TTSEEEEEE-----ESS-SGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccccccCcccEEEE-----eCC-CHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 42 368999985 333 6667899999999 9999999998755
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=76.99 Aligned_cols=118 Identities=15% Similarity=0.042 Sum_probs=95.1
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC---
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--- 281 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--- 281 (629)
.....+.+...+....+ .-|||+|.|||-++..++++++...+++.++.+.+.+....++...+.+..+|+..+.
T Consensus 33 Ss~lA~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 33 SSILARKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred cHHHHHHHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 34456666666655444 3799999999999999999998877889999999999999999888888888776654
Q ss_pred --CCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 282 --YPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 --~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
+.+..||.|+|..-+..++.. .-++|+++...|++||-++...
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 567889999997766666544 3468999999999999998764
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.6e-06 Score=95.65 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=74.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCC-CCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRL-PYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~L-p~pd~sFDlV~~s~ 294 (629)
+++|||+|||+|.++..++..|.. .++++|+|+.+++.|+++ +. .+.+.++|.... .-..++||+|++..
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 348999999999999999998764 467779999999999875 33 467888886442 11156899999854
Q ss_pred ccccc----------ccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPW----------YMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~----------~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
-...- ..+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32110 11124578888999999999988753
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.3e-05 Score=68.76 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=70.1
Q ss_pred EEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CC---eEEEEecCCC--CCCCC-CCeeEEEecCccc
Q 006834 226 AVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VP---AMIGVISSKR--LPYPA-RAFDMAHCSGCLI 297 (629)
Q Consensus 226 VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~---~~~~v~d~~~--Lp~pd-~sFDlV~~s~~L~ 297 (629)
+||+|||+|... .+.........++++|.++.++..+.... .. +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 33333221123455799999999866543 11 4566666665 77776 589999 666665
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6653 78899999999999999999864
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=88.23 Aligned_cols=99 Identities=9% Similarity=0.171 Sum_probs=68.0
Q ss_pred EEEeecccchhHHhhhhC---CCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCC-cccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSK---YPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~---~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
.|||+|||+|..+.+|++ .+- ..|+.+|.++.++..+.++ |+-.-+.-.+..+...| ..||++-+..++.
T Consensus 59 ~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 59 QVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred EEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 599999999999888765 222 2566677777888888766 33211111234445555 5689877765554
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
... ..+...++.|+.|+|||||.+++.|.
T Consensus 137 ~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 137 FLE-PSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 432 23467899999999999999999874
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-05 Score=93.71 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=72.3
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------------------CCeEEEEecCCCCCC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------------------VPAMIGVISSKRLPY 282 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------------------~~~~~~v~d~~~Lp~ 282 (629)
.+|||+|||+|.++..+++..... .++++|+|+.+++.|+++. .++.+...|.....-
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~-~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPS-KVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 489999999999999999875422 5678899999999997541 136777777654321
Q ss_pred C-CCCeeEEEecCcccccc---------------------------------cCH----HHHHHHHHhcccCCcEEEEEe
Q 006834 283 P-ARAFDMAHCSGCLIPWY---------------------------------MYD----GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 p-d~sFDlV~~s~~L~h~~---------------------------------~d~----~~~L~el~RvLKPGG~liis~ 324 (629)
. ...||+|+++.-.+.-. ++. ..++.+..++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999966543111 010 357788889999999999974
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=86.64 Aligned_cols=100 Identities=13% Similarity=0.035 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCCC--C--CCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRLP--Y--PARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~Lp--~--pd~sFDlV~ 291 (629)
+++|||+|||+|.++..++..+.. .++++|+|+.+++.|+++ +. .+.+..+|....- + ..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 348999999999999887766542 567779999999999864 33 4678888875531 1 246899999
Q ss_pred ecCccccccc--------CHHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYM--------YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~--------d~~~~L~el~RvLKPGG~liis~ 324 (629)
+..-...-.. .-..++....++|+|||.+++.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9754311110 11234556789999999999875
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.3e-05 Score=85.45 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEE-ecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGV-ISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v-~d~~~ 279 (629)
..+...+.++.....|. .|||--||||+++....-.|..++ |.|+++.|++-|+.+ ++ +..+.. .|+..
T Consensus 183 P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~vi---G~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVI---GSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEe---ecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 45566666776666666 899999999999888877777554 559999999999865 22 333444 49999
Q ss_pred CCCCCCCeeEEEecCccc-----ccc--cC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 280 LPYPARAFDMAHCSGCLI-----PWY--MY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~-----h~~--~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
+|+++++||.|.+-.-.- .-. ++ -..+|..+.++|++||++++..|
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 999998999999833220 111 01 24689999999999999999987
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.4e-06 Score=78.99 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=85.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----c-----ccceeccccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----G-----LIGTYQDWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----g-----li~~~~~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
..|||+|||.|.++..|++++ -+|..+|.++.++..+.++ | +.-..+|+.+. ++ ..||+|=++.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~d~vi~n~ 98 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---FRGDKFDVILFNP 98 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---ccccCceEEEECC
Confidence 369999999999999998874 3566666665666666332 2 22233355443 34 4799986554
Q ss_pred cccccC------------------CCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCC
Q 006834 551 VFSIYQ------------------DRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPF 611 (629)
Q Consensus 551 ~fs~~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~ 611 (629)
-|.... ....++.++.++.|+|+|||.+++-... .....+.+.+....|+......+.-.+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 178 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPF 178 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCC
Confidence 432210 1223567899999999999998885432 235678888888888765443333333
Q ss_pred CCceEEEEEe
Q 006834 612 NPEKILFAAK 621 (629)
Q Consensus 612 ~~e~~l~~~K 621 (629)
+.-.+++.+|
T Consensus 179 ~~~~~~~~~~ 188 (188)
T PRK14968 179 EELIVLELVK 188 (188)
T ss_pred ceEEEEEEeC
Confidence 3334454443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.7e-06 Score=82.86 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=66.8
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc--cceec-cccccCCCCCcccceeeccccccccCC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~~~ 557 (629)
..|||+|||.|.+..+|++..- -..+..+|.++..+..+.++.- +..+. |. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc--
Confidence 5699999999999999987631 1124555555566666666542 12222 22 2333344899999997776533
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+...+|.++.|+|+|||.+++..
T Consensus 112 -~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 -DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 356889999999999999999975
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.1e-05 Score=80.58 Aligned_cols=154 Identities=14% Similarity=0.178 Sum_probs=101.2
Q ss_pred HHHHHHHHhhcCc--cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH---Hc---C----------
Q 006834 206 DAYIDNINELIPL--TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL---ER---G---------- 267 (629)
Q Consensus 206 ~~~i~~I~~lL~~--~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~---er---g---------- 267 (629)
+..++.|.+..+. ......+||--|||.|+++..++.+|..+ .+.|.|--|+-... .. .
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~---~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAV---QGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceE---EEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 4456677777663 22234589999999999999999998754 55699998854332 10 0
Q ss_pred -----------------------------CCeEEEEecCCCCCCCC---CCeeEEEecCcccccccCHHHHHHHHHhccc
Q 006834 268 -----------------------------VPAMIGVISSKRLPYPA---RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLR 315 (629)
Q Consensus 268 -----------------------------~~~~~~v~d~~~Lp~pd---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK 315 (629)
.++....+|...+..++ ++||+|++.+.+ .-..+.-.+|..+.++||
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLK 193 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhc
Confidence 01222233333333233 699999987655 555567789999999999
Q ss_pred CCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeeccc
Q 006834 316 PGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365 (629)
Q Consensus 316 PGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 365 (629)
|||++|=.+|-...-... + ......++-..++|..+++.++|+.+.+.
T Consensus 194 pgG~WIN~GPLlyh~~~~-~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPM-S-IPNEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred cCCEEEecCCccccCCCC-C-CCCCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 999988888744321111 0 11222355567889999999999877543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-05 Score=81.34 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=95.4
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC-cEeEEEeecCcHHHHHHHHHcC-------CCeEEEEec
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI-LTMSFARRDTHEAQVQFALERG-------VPAMIGVIS 276 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~-~~v~i~gvDiS~~~i~~A~erg-------~~~~~~v~d 276 (629)
.+.+.+.+.+.-.-+...+.+|||...|-|.++...+++|. .++++ +.++..++.|.-+. ..+.+..+|
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~Vitv---Ekdp~VLeLa~lNPwSr~l~~~~i~iilGD 193 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITV---EKDPNVLELAKLNPWSRELFEIAIKIILGD 193 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEE---eeCCCeEEeeccCCCCccccccccEEeccc
Confidence 45556666555444443455999999999999999999997 55555 88888888887431 235777777
Q ss_pred CCCC--CCCCCCeeEEEecCccccccc--CHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHH
Q 006834 277 SKRL--PYPARAFDMAHCSGCLIPWYM--YDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIED 352 (629)
Q Consensus 277 ~~~L--p~pd~sFDlV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~ 352 (629)
+.++ .|+|.+||+|+--.--..... .-..+.+|++|+|||||.++-.+-+..- .+.+ ...+..+.+
T Consensus 194 ~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~--ryrG--------~d~~~gVa~ 263 (287)
T COG2521 194 AYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK--RYRG--------LDLPKGVAE 263 (287)
T ss_pred HHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc--cccc--------CChhHHHHH
Confidence 7654 488999999985221111111 1357899999999999999885422110 1111 112344666
Q ss_pred HHHHhcceeec
Q 006834 353 IAKRLCWKKLI 363 (629)
Q Consensus 353 l~~~l~w~~v~ 363 (629)
..++.+|..+.
T Consensus 264 RLr~vGF~~v~ 274 (287)
T COG2521 264 RLRRVGFEVVK 274 (287)
T ss_pred HHHhcCceeee
Confidence 66777887543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=81.49 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=79.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCCcccceeeccccccccC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQ 556 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~ 556 (629)
.+|||+|||.|..+.++.+.+.- .|+.+|.++.++..+.++ |+-...+-.+. ..+||+|.|+-+.
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----~~~fD~Vvani~~---- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----DLKADVIVANILA---- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----CCCcCEEEEcCcH----
Confidence 36999999999998888776531 355666665676666554 33111110000 1279999884321
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
-.+..++.++.|+|||||++|+++.. +....+...+....+.......+ +.-..++++|
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~ 249 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKK 249 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEe
Confidence 12456888999999999999999754 34667778888888887644333 2344555555
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=87.37 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC-
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL- 280 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L- 280 (629)
.+.+.+.+.+...++ .+|||+|||+|.++..|++... .++++|+++.+++.|+++ + .++.+..+|....
T Consensus 279 ~l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 344555555544333 3899999999999999998754 456779999999999864 2 3578888886542
Q ss_pred ---CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 281 ---PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 281 ---p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
++.+++||+|++...-... ...++..+.+ |+|++.++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~---~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC---AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC---CHHHHHHHHh-cCCCEEEEEc
Confidence 2445689999975532111 2456666554 8999988777
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.9e-05 Score=76.80 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEE-ecCCC-CC-CCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGV-ISSKR-LP-YPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v-~d~~~-Lp-~pd~sFDlV~~s 293 (629)
+++|||||.+.|.-+.+|+..-.....++.+|.++++.+.|++. |. .+.... +|... +. ...++||+|+.-
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 44899999999999999998755333678889999999999975 32 244444 34322 12 346899999952
Q ss_pred CcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 294 ~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+...+-..++..+.++|||||.+++.
T Consensus 140 ----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 140 ----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred ----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 33334467999999999999999996
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-06 Score=84.98 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCC
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFST 538 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~ 538 (629)
..|++.+...... .+..+ .+|||+|||+|-++.+|++.. --+|+.+|.++++++.+.+++ ..++.-.+.++
T Consensus 35 ~~wr~~~~~~l~~--~~~~~--~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp- 105 (226)
T PRK05785 35 VRWRAELVKTILK--YCGRP--KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP- 105 (226)
T ss_pred HHHHHHHHHHHHH--hcCCC--CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC-
Confidence 5677655432211 11222 469999999999999998872 137888898889999998874 23333345543
Q ss_pred CC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCc
Q 006834 539 YP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEG 576 (629)
Q Consensus 539 yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG 576 (629)
|| ++||+|-+...+ ++--+.+..|.||.|||||.+
T Consensus 106 ~~d~sfD~v~~~~~l---~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFAL---HASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChh---hccCCHHHHHHHHHHHhcCce
Confidence 44 899999985544 234578999999999999954
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=83.93 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=66.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPYP 283 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~p 283 (629)
...++.+.+.+....+. +|||+|||+|.++..|++++. .++++|+++.|++.++++. .++.+.++|...++++
T Consensus 28 ~~i~~~i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 28 ENILDKIVDAAGPQPGD--NVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence 34566677766654444 899999999999999999875 4567799999999998764 4688899998888765
Q ss_pred CCCeeEEEecCcc
Q 006834 284 ARAFDMAHCSGCL 296 (629)
Q Consensus 284 d~sFDlV~~s~~L 296 (629)
+-.+|.|+++..+
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 4336888887643
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.6e-06 Score=82.57 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=80.7
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC-CC-cccceeecc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST-YP-RTYDLIHAS 549 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~-yp-~t~Dl~H~~ 549 (629)
-.+|||+|||+|.++..|++. +- .+|+.+|.++.++..+.++ |+ +.+++ |+.+.+.. ++ .+||+|-+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 357999999999999998764 21 2455666665677666543 43 23333 33233432 54 889998763
Q ss_pred cccc-----ccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCeEEE
Q 006834 550 GVFS-----IYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEGMRWKSQI 603 (629)
Q Consensus 550 ~~fs-----~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~ 603 (629)
.... ....+...+.+|.++.|+|||||.++|. +.......+.+.+..--|.+.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 2211 1112234688999999999999999996 6666777777777777787763
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.1e-05 Score=81.41 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=67.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.+.+.+...++. +|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|...+++
T Consensus 15 ~~~~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGD--PVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 55577777776655444 899999999999999999864 4567799999999998763 358888899888776
Q ss_pred CCCCeeEEEecCcc
Q 006834 283 PARAFDMAHCSGCL 296 (629)
Q Consensus 283 pd~sFDlV~~s~~L 296 (629)
+ .||.|+++..+
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 5 48999998765
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-06 Score=74.18 Aligned_cols=91 Identities=24% Similarity=0.313 Sum_probs=50.1
Q ss_pred EeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH----Hhhccc--ceec-cccccCCCCC-cccceeecccccccc
Q 006834 484 MDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI----YERGLI--GTYQ-DWCEAFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 484 lD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~ergli--~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
||+|||+|.+..+|.+.. -...++.+|.++.++..+ .+.+.- .... +--+.+...+ .+||+|.+.++|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998762 223444555555666333 332321 1111 1112333344 599999999998876
Q ss_pred CCCcCHHHHHHHHhhcccCCcEE
Q 006834 556 QDRCDITNILLEMDRILRPEGTV 578 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~ 578 (629)
-+++.+|..+.++|||||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.8e-05 Score=78.43 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
....+.+.+.+....+. +|||+|||+|.++..|++++.. ++++|+++.+++.++++. .++.+..+|...+++
T Consensus 15 ~~i~~~i~~~~~~~~~~--~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGD--VVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHHhcCCCCcC--EEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh
Confidence 44566666666554444 8999999999999999998764 566699999999998763 467888888888776
Q ss_pred CCCCee---EEEecCcccccccCHHHHHHHHHhcccCCcE
Q 006834 283 PARAFD---MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGY 319 (629)
Q Consensus 283 pd~sFD---lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~ 319 (629)
+ +|| +|+++..+ |+. ..++..+.. .+|+.
T Consensus 90 ~--~~d~~~~vvsNlPy-~i~---~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPY-NIS---SPLIFKLLE--KPKFR 121 (253)
T ss_pred h--HcCCcceEEEcCCh-hhH---HHHHHHHhc--cCCCc
Confidence 5 466 77776544 332 344444443 44443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=6e-06 Score=85.65 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=64.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCC-cccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYP-RTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp-~t~Dl 545 (629)
+..+. +|||+|||.|..+..+++. +- ...|+.+|.++.++..+.++ |+ +...+ |. +.+ ++| .+||+
T Consensus 75 ~~~g~--~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l-~~~~~~fD~ 149 (272)
T PRK11873 75 LKPGE--TVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EAL-PVADNSVDV 149 (272)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhC-CCCCCceeE
Confidence 44554 6999999998765444332 10 01345556555778877764 33 11222 11 222 244 79999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|+++.++.... +.+.+|.|+-|+|||||.+++.|
T Consensus 150 Vi~~~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99987765433 45889999999999999999975
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=79.66 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=65.2
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc----cceec-cccccCCCCCcccceeeccccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL----IGTYQ-DWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl----i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
-.+|||+|||.|.++.++.+..--.-+++.+|.++..+..+.++.- +-.++ |.. ..+.-+.+||+|++..++..
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE-ALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh-cCCCCCCcEEEEEEeeeeCC
Confidence 3479999999999999987652100134444554466667666542 22322 221 12211368999998666543
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
-.+...+|.++.++|||||.+++.+
T Consensus 119 ---~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 119 ---VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred ---cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3457889999999999999999864
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=78.62 Aligned_cols=97 Identities=16% Similarity=0.103 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC-CC-----CCCCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR-LP-----YPARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~-Lp-----~pd~sFDlV 290 (629)
+++|||||+++|.-+.+|++.-.....++.+|.+++..+.|++. | ..+.+..+++.. ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 34899999999999999998643333567779999999999753 3 357788777643 12 124689999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+.-. ...+-..++..+.++|+|||.+++.
T Consensus 126 FiDa----~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 126 FIDA----DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEES----TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcc----cccchhhHHHHHhhhccCCeEEEEc
Confidence 9644 2323457888999999999999997
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-05 Score=77.89 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcC--ccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC---------------
Q 006834 206 DAYIDNINELIP--LTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG--------------- 267 (629)
Q Consensus 206 ~~~i~~I~~lL~--~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg--------------- 267 (629)
......+.++|. +.+|- ++||+|.|+|.++..++.. +.......|+|..++.++.++++-
T Consensus 66 p~mha~~le~L~~~L~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~ 143 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR 143 (237)
T ss_pred hHHHHHHHHHHHHhhccCc--ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence 333444445554 33444 8999999999999888743 333222267799999999988641
Q ss_pred CCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 268 VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 268 ~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.++.++++|.....-+...||.|||...- ....+++...|+|||.+++-
T Consensus 144 ~~l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 144 GELSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CceEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEe
Confidence 24667888888777677899999997533 34557778889999999885
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.7e-05 Score=77.32 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=70.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC-CC-C----CCCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR-LP-Y----PARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~-Lp-~----pd~sFDlV 290 (629)
.++|||||+|+|..+.+++..-.....++.+|.+++..+.|++. |. .+.+..+++.. |+ + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 34899999999999999987432222466779999999999864 33 47777777533 22 1 13689999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+.-. ...+-..++..+.++|+|||.+++.
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 9633 2223457889999999999999886
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.9e-05 Score=75.65 Aligned_cols=118 Identities=15% Similarity=0.062 Sum_probs=68.8
Q ss_pred chHHHHHHHHhhc----CccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C----CCeE
Q 006834 204 GADAYIDNINELI----PLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G----VPAM 271 (629)
Q Consensus 204 ga~~~i~~I~~lL----~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g----~~~~ 271 (629)
++..+.+.+.+.. ......+.+|||+|||+|..+..++... ....++..|..+ .++..+.+ + ..+.
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~ 100 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVS 100 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------E
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcccccccccc
Confidence 4445555555532 1222345599999999999999888882 122456679888 77766543 1 2345
Q ss_pred EEEecCCC-C--C-CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 272 IGVISSKR-L--P-YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 272 ~~v~d~~~-L--p-~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...+... . . ...++||+|+++.++. .......++.-+.++|+|+|.++++.
T Consensus 101 v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 101 VRPLDWGDELDSDLLEPHSFDVILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEE--TTS-HHHHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CcEEEecCcccccccccccCCEEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 55544322 1 1 2346899999999994 44456789999999999999977774
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.4e-06 Score=87.13 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=77.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+..+||+|||.|-.+. .. ....+.|.|.+...+..|+..+.. ....+|+..+|+.+.+||.+++..++||+...
T Consensus 46 gsv~~d~gCGngky~~----~~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG----VN-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCc----CC-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 3489999999996531 11 223567789999999988777653 55678899999999999999999999999754
Q ss_pred --HHHHHHHHHhcccCCcEEEEEe
Q 006834 303 --DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 303 --~~~~L~el~RvLKPGG~liis~ 324 (629)
...+++|+.|+|||||...+.+
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE
Confidence 4579999999999999987764
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=5e-06 Score=78.57 Aligned_cols=96 Identities=22% Similarity=0.404 Sum_probs=70.8
Q ss_pred EEEeecccchhHHhhhhC-C--CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC-CCcccceeeccc
Q 006834 482 NVMDMNAYLGGFAAAMSK-Y--PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST-YPRTYDLIHASG 550 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~-~--~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~-yp~t~Dl~H~~~ 550 (629)
+|||+|||+|-++-.|++ . +. +++.+|.++.+++.+.++ |+ +-.++ |+-+ ++. |+..||+|.+.+
T Consensus 6 ~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 6 KILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISNG 81 (152)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEES
T ss_pred EEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEcC
Confidence 699999999999999983 2 33 355567777888888773 55 34444 3323 221 447899999988
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
++ .+-.+.+.+|.+|-|.|+|||.+++++..
T Consensus 82 ~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 88 34456678999999999999999999776
|
... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.7e-05 Score=83.92 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=69.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCCCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd~sFDlV~~s~~L~ 297 (629)
.+|||+|||+|.++..++..+. .++++|+++.+++.|+++ +. ++.+..+|...+. ...++||+|++..-..
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 4899999999999999998764 456779999999999864 33 5788888875532 1224699999876442
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. ...++..+. .++|++.++++..
T Consensus 312 G~---~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 GI---GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CC---cHHHHHHHH-hcCCCeEEEEEeC
Confidence 22 244555554 4799999999853
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.5e-05 Score=75.54 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEe--------EEEeecCcHHHHHHHHHc----CC--CeE
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTM--------SFARRDTHEAQVQFALER----GV--PAM 271 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v--------~i~gvDiS~~~i~~A~er----g~--~~~ 271 (629)
......+..+....++. .|||--||+|++..+.+..+.... .+.|.|+++.+++.|+++ +. .+.
T Consensus 14 ~~lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 45555666666655554 899999999999987766543322 267889999999999865 32 467
Q ss_pred EEEecCCCCCCCCCCeeEEEecCcccccccCH-------HHHHHHHHhcccCCcEEEEE
Q 006834 272 IGVISSKRLPYPARAFDMAHCSGCLIPWYMYD-------GLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 272 ~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPGG~liis 323 (629)
+.+.|..++++.++++|.|+++.-+-.-.... ..++.++.++|++..++++.
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 88889999998888999999977442211111 24789999999994444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.7e-05 Score=79.65 Aligned_cols=95 Identities=17% Similarity=0.221 Sum_probs=63.3
Q ss_pred chHHHHHHHHhhcCcc------CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---C--C--Ce
Q 006834 204 GADAYIDNINELIPLT------GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---G--V--PA 270 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~------~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g--~--~~ 270 (629)
++-.|+..+.+++... .+...++||||||+|.+...|+.+.. ...++++|+++.+++.|+++ + . .+
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 3566777777776431 23456899999999988888876533 23678889999999999864 2 2 23
Q ss_pred EEEE-ecCCCCC----CCCCCeeEEEecCccccc
Q 006834 271 MIGV-ISSKRLP----YPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 271 ~~~v-~d~~~Lp----~pd~sFDlV~~s~~L~h~ 299 (629)
.+.. .+...+. .+.+.||+|+|+.-++.-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence 3432 2222221 246789999999977443
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=82.77 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCCC--eEEEEecCCCCCCCCCCeeEEEecC--
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGVP--AMIGVISSKRLPYPARAFDMAHCSG-- 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~~--~~~~v~d~~~Lp~pd~sFDlV~~s~-- 294 (629)
.++|||||||+|.++..-++.|.. .+.++|.|.-+ +.|.+ ++.. +.+..+..+.+-+|-.+.|+|++-+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGAR--KVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcc--eEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 349999999999999999999854 44666777544 55553 4432 5566666666555578999999833
Q ss_pred -cccccccCHHHHHHHHHhcccCCcEEEE
Q 006834 295 -CLIPWYMYDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 295 -~L~h~~~d~~~~L~el~RvLKPGG~lii 322 (629)
+|.+ ..-....|..=.+.|+|||.++=
T Consensus 138 y~Ll~-EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLY-ESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHH-hhhhhhhhhhhhhccCCCceEcc
Confidence 2211 11235567777899999998864
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=82.46 Aligned_cols=102 Identities=20% Similarity=0.334 Sum_probs=74.9
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHH----HHhhcccceeccccccCCCCCcccceeec
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGA----IYERGLIGTYQDWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~ergli~~~~~~~e~f~~yp~t~Dl~H~ 548 (629)
.|++|.. |||+|||-|+.+.+++++ +|-| +.++.+++++.. +.++||-.-.+---+....++..||=|-+
T Consensus 69 ~L~~G~~--lLDiGCGWG~l~~~aA~~y~v~V---~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvS 143 (283)
T COG2230 69 GLKPGMT--LLDIGCGWGGLAIYAAEEYGVTV---VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVS 143 (283)
T ss_pred CCCCCCE--EEEeCCChhHHHHHHHHHcCCEE---EEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeee
Confidence 3778875 999999999999999887 6744 444444455544 56789853333222344555566999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.|+|..-.. -+.++++.-++++|+|||.+++-
T Consensus 144 vgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 144 VGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred hhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 999986544 36789999999999999999884
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.2e-05 Score=76.20 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=79.4
Q ss_pred hHHHHHHHHhhcCccC-CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----C--CeEEEEe--
Q 006834 205 ADAYIDNINELIPLTG-GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----V--PAMIGVI-- 275 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~-g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~--~~~~~v~-- 275 (629)
++.+.+.+.+.+.... .....+||+|||+|.++..|+..-. ...++++|.|+.++..|.++. . .+.+...
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 4556666666554321 1233799999999999999988755 346788899999999998762 1 1222211
Q ss_pred cC---CCCCCCCCCeeEEEecCcccccccCHH-------------------------HHHHHHHhcccCCcEEEEEe
Q 006834 276 SS---KRLPYPARAFDMAHCSGCLIPWYMYDG-------------------------LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 276 d~---~~Lp~pd~sFDlV~~s~~L~h~~~d~~-------------------------~~L~el~RvLKPGG~liis~ 324 (629)
.. ...+...+.+|+++|+.-.+.-.+.++ .++.-+.|.|+|||.+++..
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 11 223355789999999775532221111 35667889999999999984
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.7e-05 Score=69.44 Aligned_cols=103 Identities=15% Similarity=0.008 Sum_probs=70.3
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCch-HHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCC-CC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVAS-WGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYP-AR 285 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~-~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~p-d~ 285 (629)
..+.|.+.++... +.+|||||||.|. ++..|++.|..++ ++|+++..++.|++++. .+.+.|...-.+. -+
T Consensus 4 i~~~l~~~~~~~~--~~kileIG~GfG~~vA~~L~~~G~~Vi---aIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 4 IAEFIAENYEKGK--NKKIVELGIGFYFKVAKKLKESGFDVI---VIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHHHhccccc--CCEEEEEEecCCHHHHHHHHHCCCEEE---EEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHh
Confidence 3445555554433 3589999999995 8889999887554 55999999999988874 5566666554433 36
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.+|+|.+.+.- .+....+.++.+-+ |.-+++.
T Consensus 77 ~a~liysirpp----~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 77 NAKLIYSIRPP----RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred cCCEEEEeCCC----HHHHHHHHHHHHHc--CCCEEEE
Confidence 79999987733 24445566666554 4555554
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=72.20 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=64.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+++|+|+|||||.++...+-.|.. .+.++|+++++++.++++. ..+.|.+.|..+.. ..||.++.+.-+--
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 458999999999999999988865 4577899999999998763 46889988887654 56899998776533
Q ss_pred cccC-HHHHHHHHHhc
Q 006834 299 WYMY-DGLYLLEVDRV 313 (629)
Q Consensus 299 ~~~d-~~~~L~el~Rv 313 (629)
+... +..+|....++
T Consensus 121 ~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 121 QRRHADRPFLLKALEI 136 (198)
T ss_pred ccccCCHHHHHHHHHh
Confidence 3222 23455555554
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.2e-05 Score=81.66 Aligned_cols=129 Identities=12% Similarity=0.180 Sum_probs=83.1
Q ss_pred hhchhhHHHHHHHHHHHHHh-hcccCCCCeeEEEeecccchh----HHhhhhCCC----eEEEEecCCCCCCCchHHHHh
Q 006834 452 EKLREDNELWKDRMTYYKKI-DGLFHKGRYRNVMDMNAYLGG----FAAAMSKYP----VWVMNVVPFHSNPDTLGAIYE 522 (629)
Q Consensus 452 ~~f~~d~~~w~~~v~~y~~~-~~~~~~~~~R~vlD~~~g~Gg----faa~l~~~~----v~~mnv~~~~~~~~~l~~~~e 522 (629)
..|--|...|..-.+..... +.....+.--.|+|+|||+|- .|..|.+.. -|...|+.+|.++.+|..+.+
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc
Confidence 44777777777655443321 221222333579999999994 565555431 245578888988888887765
Q ss_pred hcccc-----------------------------------eeccccccCCCCC-cccceeeccccccccCCCcCHHHHHH
Q 006834 523 RGLIG-----------------------------------TYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILL 566 (629)
Q Consensus 523 rgli~-----------------------------------~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~ 566 (629)
|+.+ ..||..+ ..+| ..||+|.|..+|.... .-....++.
T Consensus 151 -~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~ 226 (264)
T smart00138 151 -GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFD-EPTQRKLLN 226 (264)
T ss_pred -CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCC-HHHHHHHHH
Confidence 2211 1223332 1233 8999999988876443 234567999
Q ss_pred HHhhcccCCcEEEEEeCH
Q 006834 567 EMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 567 e~dRiLrPgG~~i~~d~~ 584 (629)
++.|+|+|||++++....
T Consensus 227 ~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 227 RFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHhCCCeEEEEECcc
Confidence 999999999999997654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.6e-05 Score=80.40 Aligned_cols=96 Identities=18% Similarity=0.301 Sum_probs=67.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.|||+|||.|.++..|.+.+. +++-+|.++..+..+.++ ++ +.+.+ ++.+.....+..||+|.+..+|...
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~ 127 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV 127 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence 599999999999999988753 456666665666666554 33 22222 2222211234789999997776644
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
. +...+|.++.|+|+|||.+++.+.
T Consensus 128 ~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 128 P---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred C---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 3 557899999999999999999754
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=71.42 Aligned_cols=115 Identities=10% Similarity=-0.078 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~ 279 (629)
+...+.+...+... -.+.+|||++||+|.++..++.+|.. .++.+|.++.+++.++++ +. ++.+...|..+
T Consensus 34 ~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~ 110 (189)
T TIGR00095 34 RVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR 110 (189)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence 44444555554321 12348999999999999999999874 457779999999988764 22 36777777633
Q ss_pred C-C-C-CC-CCeeEEEecCcccccccCHHHHHHHH--HhcccCCcEEEEEeC
Q 006834 280 L-P-Y-PA-RAFDMAHCSGCLIPWYMYDGLYLLEV--DRVLRPGGYWILSGP 325 (629)
Q Consensus 280 L-p-~-pd-~sFDlV~~s~~L~h~~~d~~~~L~el--~RvLKPGG~liis~P 325 (629)
. . + .. ..||+|+.-.-+.. . .....+..+ ..+|+++|.+++..+
T Consensus 111 ~l~~~~~~~~~~dvv~~DPPy~~-~-~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 111 ALKFLAKKPTFDNVIYLDPPFFN-G-ALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHhhccCCCceEEEECcCCCC-C-cHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2 2 1 12 24788887654421 1 233444444 347999999988754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.6e-05 Score=91.03 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=68.0
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc----c-cceeccccccCCC-CC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG----L-IGTYQDWCEAFST-YP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg----l-i~~~~~~~e~f~~-yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||+|.++.+|++. +- .+|+.+|.+..++..+.++- . +.+++.=+..++. +| .+||++.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 36999999999998888754 21 46667777777888877652 1 1122211223332 44 899999876554
Q ss_pred ccc---C-------CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 553 SIY---Q-------DRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 553 s~~---~-------~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
-.+ . +.-++..+|.++.|+|||||.++|.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 311 1 123567799999999999999999874
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=72.31 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=64.8
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||+|.++..++.. +- -.|+.+|.++.++..+.+ .|+ +-+++ |.-+.+...+..+|.++.++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~--~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPK--GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 35999999999998887642 11 134445555456665543 344 22332 21122222223356655421
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMR 598 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~ 598 (629)
...++.++.++.|+|+|||.+++.... +....+.+.++.+.
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 235789999999999999999997543 34455666665553
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00014 Score=74.02 Aligned_cols=96 Identities=17% Similarity=0.135 Sum_probs=56.6
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH----Hhhcccce-eccccccC--CCCCcccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI----YERGLIGT-YQDWCEAF--STYPRTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~----~ergli~~-~~~~~e~f--~~yp~t~Dl~H 547 (629)
+.++. .|||+|||+|++..+|++.-= --.|..+|.++.+++.+ .++.-+.. ..|-.+.. ...+.+||+|=
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence 56665 499999999999999987510 01344445555555533 33322222 22332211 12346788753
Q ss_pred ccccccccCCCcC---HHHHHHHHhhcccCCcEEEEE
Q 006834 548 ASGVFSIYQDRCD---ITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 548 ~~~~fs~~~~~c~---~~~~l~e~dRiLrPgG~~i~~ 581 (629)
++ -.+ ...+|.|+.|+|||||.++|+
T Consensus 147 ~d--------~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 147 QD--------VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EC--------CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 112 123578999999999999993
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=6e-05 Score=77.96 Aligned_cols=135 Identities=19% Similarity=0.315 Sum_probs=82.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh---cc---cceec-cccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER---GL---IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er---gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++..- ..+++.+|.++..+..+.+. ++ +.+++ |+ +...+ .+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCCc
Confidence 3699999999999999976520 12455556665666666654 22 22333 33 33334 789998775322
Q ss_pred ccc-------------C-------CC---cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecCCC
Q 006834 553 SIY-------------Q-------DR---CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESG 609 (629)
Q Consensus 553 s~~-------------~-------~~---c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~ 609 (629)
... . .. -....++.++.++|+|||++++--.......++.++....+...... .+
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~-~d- 263 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR-KD- 263 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe-cC-
Confidence 110 0 00 11345888889999999999996544445667777776666532221 11
Q ss_pred CCCCceEEEEEe
Q 006834 610 PFNPEKILFAAK 621 (629)
Q Consensus 610 ~~~~e~~l~~~K 621 (629)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 225788888765
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.3e-05 Score=76.49 Aligned_cols=118 Identities=13% Similarity=0.251 Sum_probs=71.8
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc-cceec-cccccCCCCC-cccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL-IGTYQ-DWCEAFSTYP-RTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl-i~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~ 554 (629)
.|||+|||.|.++..++..+. -+|+.+|.++.++..+.+ .|+ +-+++ |+.+ ..+ ..||+|.++--|..
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCCCC
Confidence 599999999999999887653 245555665556665444 344 22222 3332 234 68999998643321
Q ss_pred cC------------------CCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEEEe
Q 006834 555 YQ------------------DRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 555 ~~------------------~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~ 604 (629)
.. ....++.++.++-|+|||||.+++-.. ......+.+.+++-.|+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 10 112256688899999999999998422 222334445555555655543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.3e-05 Score=75.86 Aligned_cols=131 Identities=17% Similarity=0.196 Sum_probs=71.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcccceeccccccC------CCCC-cc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAF------STYP-RT 542 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f------~~yp-~t 542 (629)
+..+. +|||+|||+|+++.++.++ .|+..=+.|. . ...++--+..|..+.. ..+| .+
T Consensus 30 i~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~------~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 30 IKPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM------K---PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred cCCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEEecccc------c---cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 45554 6999999999998877654 2444333331 1 0123211122433211 1244 67
Q ss_pred cceeecccccc------cc--CCCcCHHHHHHHHhhcccCCcEEEEEe-CH----HHHHHHHHHHhcCCCeEEEe-ecCC
Q 006834 543 YDLIHASGVFS------IY--QDRCDITNILLEMDRILRPEGTVIFRD-TV----EMLVKIRSITEGMRWKSQIM-DHES 608 (629)
Q Consensus 543 ~Dl~H~~~~fs------~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~----~~~~~~~~~~~~l~w~~~~~-~~e~ 608 (629)
||+|=+++... .. ...+.++.+|.++.|+|||||.+++.. .. +++..+++ .+ |.+.+. |.-.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~ 174 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQAS 174 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCC
Confidence 99887754311 10 011234679999999999999999942 21 23333333 22 444433 3333
Q ss_pred CCCCCceEEEEE
Q 006834 609 GPFNPEKILFAA 620 (629)
Q Consensus 609 ~~~~~e~~l~~~ 620 (629)
.....|+.+||.
T Consensus 175 ~~~~~~~~~~~~ 186 (188)
T TIGR00438 175 RKRSAEVYIVAK 186 (188)
T ss_pred CcccceEEEEEe
Confidence 334579999985
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.7e-05 Score=76.21 Aligned_cols=124 Identities=14% Similarity=0.178 Sum_probs=76.0
Q ss_pred chhhHHHHHHHHHHHHHhhcccC-CCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--c
Q 006834 454 LREDNELWKDRMTYYKKIDGLFH-KGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--I 526 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~-~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i 526 (629)
|....++=..++......+.... ...-.+|||+|||.|.++..|.+.+. .++-+|.++..+..+.++ |+ +
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~ 95 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKI 95 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 44444443444554454443211 11234699999999999998877643 245555554566655543 33 2
Q ss_pred ceeccccccCC-CCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 527 GTYQDWCEAFS-TYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 527 ~~~~~~~e~f~-~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
...+.-.+.+. ..|.+||+|.+.+++... .+.+.+|.++.++|+|||.+++++.
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 22221111222 235789999987766533 4568899999999999999999753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.9e-05 Score=84.91 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=77.6
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc---cceeccccccCCCCC-cccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL---IGTYQDWCEAFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
..|||+|||+|.++..+++. +- .++.-+|.+++++..+.++.- +.+.+.=.+.+ .++ .+||+|-+.+++...
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhhC
Confidence 36999999999998887653 21 245556666678888877531 23333111222 244 799998887766544
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCHH-----------------HHHHHHHHHhcCCCeEE
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTVE-----------------MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-----------------~~~~~~~~~~~l~w~~~ 602 (629)
. +.+.+|.|+-|+|||||.+++.+... ..+.+.++++...++..
T Consensus 192 ~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 192 P---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred C---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 4 44789999999999999998864321 13556667777777654
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.7e-05 Score=83.82 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=74.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH----HHhhcc--cceec-cccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA----IYERGL--IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~----~~ergl--i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
..+||+|||.|.|..+|+.+.= -.|++.+|-....+.. +.++|+ +-+++ |.-+-+..+| .++|.|++. |
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln--F 200 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH--F 200 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--C
Confidence 3699999999999999987520 0255666665445443 445565 33333 2212233456 899999874 4
Q ss_pred cc-c-C---CCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC-CCeE
Q 006834 553 SI-Y-Q---DRCDITNILLEMDRILRPEGTVIF-RDTVEMLVKIRSITEGM-RWKS 601 (629)
Q Consensus 553 s~-~-~---~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~l-~w~~ 601 (629)
.. | + .|=..+.+|.|+-|+|+|||.+.| ||..+....+.+.+... +++.
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 32 1 1 112236799999999999999998 57777666655554443 4443
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0001 Score=79.21 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-CCCCCCeeEEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-PYPARAFDMAH 291 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p~pd~sFDlV~ 291 (629)
.+++||.||+|.|..+.++++... ...++.+|+++++++.|++.. .++.+...|.... ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 456899999999999999988642 235677899999999998642 3567777776543 33457899999
Q ss_pred ecCccccccc------CHHHHHH-HHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYM------YDGLYLL-EVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~------d~~~~L~-el~RvLKPGG~liis~ 324 (629)
+-. ..++.. ....+++ .+.+.|+|||.+++..
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 752 222210 1246777 8999999999988753
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.3e-05 Score=85.83 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=77.4
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC--CCCCCCeeEEEecC
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL--PYPARAFDMAHCSG 294 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L--p~pd~sFDlV~~s~ 294 (629)
....+||||||.|.++..++...+.. .+.|+|++...+..|.++ +. ++.+...+...+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~-~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDA-LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCC-CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 34589999999999999999998754 677889999887776643 33 555655554323 26789999999877
Q ss_pred cccccccCH--------HHHHHHHHhcccCCcEEEEEe
Q 006834 295 CLIPWYMYD--------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~h~~~d~--------~~~L~el~RvLKPGG~liis~ 324 (629)
.= +|+... ..++..+.++|||||.+.+.+
T Consensus 426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 55 775331 369999999999999999984
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=77.31 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=73.7
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCC----CchHHHHhhcccceeccccccCCC--CCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNP----DTLGAIYERGLIGTYQDWCEAFST--YPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~----~~l~~~~ergli~~~~~~~e~f~~--yp~t~Dl~H~~~~fs~~ 555 (629)
.|||+|||-|--|.+|+++|.-|. .+|.+. ....++-++||- ++-++..+.+ +|..||+|.+..||-..
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~Vt---AvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVT---AVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEE---EEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEE---EEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccC
Confidence 499999999999999999987433 333332 234445567772 2222333332 46899999987777655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe-----------CHHH---HHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD-----------TVEM---LVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d-----------~~~~---~~~~~~~~~~l~w~~~~~ 604 (629)
+ +-.++.++..|-.-|+|||++++-. +.+. -.+|...+. .|++..+
T Consensus 108 ~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 108 Q-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp --GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred C-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 4 5588999999999999999988831 1122 245666666 4998644
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.3e-05 Score=77.53 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=72.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCC--CCC-cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFS--TYP-RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~--~yp-~t~Dl~H~~~~ 551 (629)
..|||+|||.|.|+.+|+.+.- -.||+.+|.+..++..+.+ .|+ +-+.+.=...+. .+| .++|.|+++.-
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 4699999999999999987621 1366666766666666543 344 223321111111 245 58998876321
Q ss_pred ---cc--ccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhc
Q 006834 552 ---FS--IYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEG 596 (629)
Q Consensus 552 ---fs--~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~ 596 (629)
+. ..+.|...+.+|.++-|+|||||.+++. |..+....+.+.+..
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 11 1124555688999999999999999985 666656655555444
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00084 Score=70.56 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=76.4
Q ss_pred EEEeecccchhHHhhhhCCC-e--EEE---EecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYP-V--WVM---NVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~-v--~~m---nv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
+|+|+|||+|-.|+.|++.. . ++| |...++....++..+.=.+. -+++ .--++.-...||+|=++==|-..
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~--s~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWA--SNLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEE--ecccccccccccEEEeCCCccCC
Confidence 79999999999999998773 2 333 22222222122222211111 2343 13345555699997776666543
Q ss_pred CCCc--CHHHHHHHHhhcccCCcEEEEEeC--HHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 556 QDRC--DITNILLEMDRILRPEGTVIFRDT--VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 556 ~~~c--~~~~~l~e~dRiLrPgG~~i~~d~--~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
+.-- -.+.++.+.-+-|++||.++|=-+ ..+..+|+++.. ++.++... +.-|||=++|.
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k~ 300 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKKA 300 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEecC
Confidence 3221 123588899999999999988543 335666777665 45554433 35677777763
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.4e-05 Score=75.72 Aligned_cols=102 Identities=13% Similarity=0.241 Sum_probs=69.6
Q ss_pred CCeeEEEeecccchhHHhhhhC----CCeEEEEecCCCCCCCchHHHHhhcc---cceeccccccCCCCCcccceeeccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSK----YPVWVMNVVPFHSNPDTLGAIYERGL---IGTYQDWCEAFSTYPRTYDLIHASG 550 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~~~~e~f~~yp~t~Dl~H~~~ 550 (629)
..-.+|||+|||+|.++..|++ .+. -.+|+.+|.+++++..+.++.- +.....=++.++.-+.+||+|-++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 3446799999999999888864 221 2467888888889999887732 1112111244444458999999987
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+|....+. .+..+|.||-|+|| |.+++.|.
T Consensus 138 ~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 138 FLHHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred eeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 77544332 35679999999999 56666553
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=77.90 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=64.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~ 279 (629)
...++.|.+.+...++. +|||||||+|.++..|++.+.. ++++|+++.+++.++++ + .++.+...|...
T Consensus 22 ~~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~---V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKK---VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCc---EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 44566777766655444 8999999999999999998654 56669999999999874 1 357888888877
Q ss_pred CCCCCCCeeEEEecCcc
Q 006834 280 LPYPARAFDMAHCSGCL 296 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L 296 (629)
.+++ .||+|+++..+
T Consensus 97 ~~~~--~~d~VvaNlPY 111 (294)
T PTZ00338 97 TEFP--YFDVCVANVPY 111 (294)
T ss_pred hccc--ccCEEEecCCc
Confidence 6653 68999987655
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.3e-05 Score=79.32 Aligned_cols=115 Identities=20% Similarity=0.100 Sum_probs=73.3
Q ss_pred CCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCC--------CCCcccceeecc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFS--------TYPRTYDLIHAS 549 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~--------~yp~t~Dl~H~~ 549 (629)
..-|.++|+|||.| +|+..+.-- --+|+.+|-++.||+++.+.=- -+||.=-.+++ --+++.|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~a~k~~~-~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKVAKKHPP-VTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHHhhcCCC-cccccCCccccccccccccCCCcceeeehhh
Confidence 44568999999999 666654432 2577888888889996655433 34443322333 236899995441
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEE----EeCHHHHHHHHHHHhcCCCe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIF----RDTVEMLVKIRSITEGMRWK 600 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~----~d~~~~~~~~~~~~~~l~w~ 600 (629)
- --|=|+++.++.++.|||||.|-+|. +|..-...++..+..++.|+
T Consensus 108 q----a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 Q----AVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred h----hHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 0 01228899999999999999882221 44444455555666666664
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=78.33 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=72.0
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
.+|||++||+|.++..++.... ...++++|+++.+++.++++ +. +..+...|...+....+.||+|+...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 3799999999999999976532 22567789999999999864 33 34566677654322146799999754
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+ ..+..++....+.+++||++.++....
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAtD~ 161 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTATDT 161 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEecCc
Confidence 1 245678888788899999999986533
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.6e-05 Score=75.17 Aligned_cols=95 Identities=16% Similarity=0.252 Sum_probs=68.6
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCC-cccceeeccccccccCC
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQD 557 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~ 557 (629)
..|||+|||+|.+..+|.+. +- .++..+|.++.+++.+.++.- +.+.+. ..+.+++ ++||+|-+.+++....
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~--d~~~~~~~~sfD~V~~~~vL~hl~- 119 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQG--SLFDPFKDNFFDLVLTKGVLIHIN- 119 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEe--eccCCCCCCCEEEEEECChhhhCC-
Confidence 45999999999999999875 22 356677777789998877521 233321 1233455 8999999999887553
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.-.+..+|.||.|++ +++++|.+
T Consensus 120 p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 346788999999998 57888864
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=73.04 Aligned_cols=132 Identities=18% Similarity=0.225 Sum_probs=71.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcccceec-cccccC------CCCC-c
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAF------STYP-R 541 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f------~~yp-~ 541 (629)
+..+. +|||+|||+|++...|++. .|..+-+.|. .+. .|+ -+++ |..+.- ..++ .
T Consensus 49 ~~~~~--~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~~---~~v-~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGM--TVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DPI---VGV-DFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCC--EEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cCC---CCc-EEEecCCCChHHHHHHHHHhCCC
Confidence 34443 6999999999999888765 2333333331 110 122 2222 222110 0133 6
Q ss_pred ccceeeccccccccCCC--------cCHHHHHHHHhhcccCCcEEEEEeCH-----HHHHHHHHHHhcCCCeEEEeecCC
Q 006834 542 TYDLIHASGVFSIYQDR--------CDITNILLEMDRILRPEGTVIFRDTV-----EMLVKIRSITEGMRWKSQIMDHES 608 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~~~~~e~ 608 (629)
+||+|-++......... ...+.+|.++-|+|||||.|++..-. +.+..+++....... +-+...
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ss 193 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSS 193 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccc
Confidence 89999886532221111 11356899999999999999995322 233333332222222 223333
Q ss_pred CCCCCceEEEEEe
Q 006834 609 GPFNPEKILFAAK 621 (629)
Q Consensus 609 ~~~~~e~~l~~~K 621 (629)
-.-..|..+||..
T Consensus 194 r~~s~e~~~~~~~ 206 (209)
T PRK11188 194 RARSREVYIVATG 206 (209)
T ss_pred cccCceeEEEeec
Confidence 3445788888864
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=74.97 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=75.4
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCCCeEE------EEecCCCCCCCchHHHHhhc----cccee-ccc----cccCCC
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWV------MNVVPFHSNPDTLGAIYERG----LIGTY-QDW----CEAFST 538 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~------mnv~~~~~~~~~l~~~~erg----li~~~-~~~----~e~f~~ 538 (629)
.++++.--.||||++|+|-.|..+.++ |-. -+|.-.|-+++||.+..+|- |-.-- .-| .|.++
T Consensus 95 ~L~p~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp- 172 (296)
T KOG1540|consen 95 KLGPGKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP- 172 (296)
T ss_pred ccCCCCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-
Confidence 455655577999999999888877654 111 22222333447888877765 42210 112 25666
Q ss_pred CC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH-HHHHHHHhcCCC
Q 006834 539 YP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEML-VKIRSITEGMRW 599 (629)
Q Consensus 539 yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~-~~~~~~~~~l~w 599 (629)
|| .+||+.-.. |+.. +--+++..|.|+.|||+|||.|.+-+-..+. ..|+.+++.---
T Consensus 173 Fdd~s~D~yTia--fGIR-N~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf 232 (296)
T KOG1540|consen 173 FDDDSFDAYTIA--FGIR-NVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSF 232 (296)
T ss_pred CCCCcceeEEEe--ccee-cCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhh
Confidence 77 999985431 2210 1134689999999999999999987665544 456665554333
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.4e-05 Score=77.51 Aligned_cols=95 Identities=14% Similarity=0.253 Sum_probs=72.3
Q ss_pred EEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec-ccc----ccCCCCCcccceeeccccccccCC
Q 006834 483 VMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWC----EAFSTYPRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 483 vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~----e~f~~yp~t~Dl~H~~~~fs~~~~ 557 (629)
|||+|||-|.++..|+..+ -+|..+|..+..++++..+.+.+-+. +|= |.+..==.+||.|-|..|....
T Consensus 63 vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv-- 137 (243)
T COG2227 63 VLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV-- 137 (243)
T ss_pred EEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc--
Confidence 9999999999999999999 58899999999999998777743322 110 1110000589988886666544
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
-+.+.++.+..+.|||||.++++..
T Consensus 138 -~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 138 -PDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEecc
Confidence 4558899999999999999999854
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.3e-05 Score=74.59 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=63.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c---cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L---IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l---i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
..|||+|||.|.++..+++..--.-+++.+|.+++.+..+.++- + +.+++ |.. .+..=+.+||+|.+..++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 36999999999999888765200124455555556666665541 2 23333 211 122113789999886554
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. ...+.+.+|.++.++|+|||.+++.+
T Consensus 132 ~---~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 R---NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred c---cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 3 34567889999999999999999854
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.3e-05 Score=62.93 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=62.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH---hhcc---cceec-cccccCCC-CCcccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY---ERGL---IGTYQ-DWCEAFST-YPRTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---ergl---i~~~~-~~~e~f~~-yp~t~Dl~H~~~~fs 553 (629)
+|+|+|||.|++...+.+.+. .++...|.+++.+..+. +.+. +-.++ |+. .+.. -+..||++.+++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAE-ELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChh-hhccccCCceEEEEEcccee
Confidence 489999999999999987432 34444454434444443 1121 33343 222 2222 347899999988876
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.. .-....++..+.+.|||||.+++.
T Consensus 78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53 235577999999999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=74.04 Aligned_cols=118 Identities=21% Similarity=0.328 Sum_probs=77.3
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++. +- .+++.+|..+.++..+.+ .|+ +-+++ +..+..++ .+||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCC
Confidence 36999999999999999875 21 245555655556665543 344 22332 12234454 789999886544
Q ss_pred cccC------CCc-----------------CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 553 SIYQ------DRC-----------------DITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 553 s~~~------~~c-----------------~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
.... ... ....++.++-|+|+|||.+++.........++++++...+...
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 4211 000 0235788999999999999998766566778888887777644
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=75.08 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC-CC-C-----CCCCeeE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR-LP-Y-----PARAFDM 289 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~-Lp-~-----pd~sFDl 289 (629)
.++|||||+++|.-+.+|+..-.....++.+|.+++..+.|++. | ..+.+..+++.. ++ + ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 34899999999999999987533233567779999999998754 3 346777776533 22 1 1368999
Q ss_pred EEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 290 AHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 290 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
|+.-. ....-..++..+.+.|+|||.+++.
T Consensus 160 iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99643 2223356788889999999998875
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00053 Score=71.54 Aligned_cols=202 Identities=20% Similarity=0.230 Sum_probs=120.8
Q ss_pred CCCCCCCCCCCccccccccCCCcchhhhhhcCccEeecCCeeeecCCCCCCCCchHHHHHHHHhhcCc--cCCCCCeEEE
Q 006834 151 KYKTPFKWPQSRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPL--TGGNIRTAVD 228 (629)
Q Consensus 151 ~y~~P~~wP~s~~~~w~~n~p~~~L~~~k~~q~Wv~~~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~--~~g~~~~VLD 228 (629)
|+++-|.--.+.|++ |.|.|.......+...+ .++.-.|- ....++.....+.|.+.+.. ..+.+-+|||
T Consensus 70 G~~tGFDSGstLDYV-YrN~p~G~~~~GrliDr------~yLnaiGW-rGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlD 141 (311)
T PF12147_consen 70 GLETGFDSGSTLDYV-YRNQPQGKGPLGRLIDR------NYLNAIGW-RGIRQRKVHLEELIRQAIARLREQGRPVRILD 141 (311)
T ss_pred chhcCCCCcchHhHH-hcCCCCCcchHHHHHHH------hhhcccch-HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 567777766666766 67777755433322111 11111110 11112222333334333332 2345668999
Q ss_pred eCCCCchHHHHHHHcCCc-EeEEEeecCcHHHHHHHH----HcCCC--eEEEEecCCCCC-CC--CCCeeEEEecCcccc
Q 006834 229 TGCGVASWGAYLLKRDIL-TMSFARRDTHEAQVQFAL----ERGVP--AMIGVISSKRLP-YP--ARAFDMAHCSGCLIP 298 (629)
Q Consensus 229 IGCGtG~~a~~La~~g~~-~v~i~gvDiS~~~i~~A~----erg~~--~~~~v~d~~~Lp-~p--d~sFDlV~~s~~L~h 298 (629)
|.||.|......++.... ..++.-.|.|+..++..+ ++|.. +.|.+.|+.... +. +-..++++.+..++-
T Consensus 142 IAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~El 221 (311)
T PF12147_consen 142 IAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYEL 221 (311)
T ss_pred eccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhh
Confidence 999999988887776543 457788999999998876 45543 488888765431 22 345799999998877
Q ss_pred cccCH--HHHHHHHHhcccCCcEEEEEeCCCCccc--------cc---cCccCcchhhhhHHHHHHHHHHHhcceeecc
Q 006834 299 WYMYD--GLYLLEVDRVLRPGGYWILSGPPIHWKK--------YW---RGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 299 ~~~d~--~~~L~el~RvLKPGG~liis~P~~~w~~--------~~---~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
+.++. ...|.-+.++|.|||+++.+.-|..-+. .+ ..|--. ...+.+|.++.+..+++++..
T Consensus 222 F~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 222 FPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred CCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHHcCCchhhh
Confidence 77442 4579999999999999999974322111 11 123211 112455777888888876543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00028 Score=77.65 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=86.7
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
+|||+|||+|.++.+|+.. +- .+|..+|.++.+++.+.+. |+ +.+++ ||.+....-...||+|-++-=+-.
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 6999999999999888753 22 3456666666777776653 33 33443 554321111257999887543210
Q ss_pred c-------------------CCCcC---HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecCCCCCC
Q 006834 555 Y-------------------QDRCD---ITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPFN 612 (629)
Q Consensus 555 ~-------------------~~~c~---~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~ 612 (629)
. ...-. +..++.+.-+.|+|||++++--..+....+++++....|....+-. .-.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~k--Dl~G 409 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLP--DLAG 409 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEE--cCCC
Confidence 0 00011 2357778889999999999866666677888898888786432211 1225
Q ss_pred CceEEEEEec
Q 006834 613 PEKILFAAKT 622 (629)
Q Consensus 613 ~e~~l~~~K~ 622 (629)
.++++++++.
T Consensus 410 ~dR~v~~~~~ 419 (423)
T PRK14966 410 LDRVTLGKYM 419 (423)
T ss_pred CcEEEEEEEh
Confidence 7899998763
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=1e-05 Score=71.12 Aligned_cols=90 Identities=21% Similarity=0.325 Sum_probs=63.4
Q ss_pred EEeecccchhHHhhhhCCC--eEEEEecCCCCCCCchHHHHhhcc-----cceeccccccCCCCC---cccceeecccc-
Q 006834 483 VMDMNAYLGGFAAAMSKYP--VWVMNVVPFHSNPDTLGAIYERGL-----IGTYQDWCEAFSTYP---RTYDLIHASGV- 551 (629)
Q Consensus 483 vlD~~~g~Ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~ergl-----i~~~~~~~e~f~~yp---~t~Dl~H~~~~- 551 (629)
|||+|||.|....+|.+.- ---..+..+|.++.++..+.++.- +-.++ ..+..+| .+||+|=+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~---~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQ---ADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEE---SCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEE---CCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999998651 011466777877789999988883 22333 3444444 79999999666
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCc
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEG 576 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG 576 (629)
|.. -..-.++.+|-++-++|||||
T Consensus 78 ~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 444 555678899999999999998
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=65.84 Aligned_cols=93 Identities=25% Similarity=0.286 Sum_probs=58.8
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.++++. +- .+|..+|.++.++..+.+ .|+ +.+.. |.-..+...+.+||.|=+.+..
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 37999999999999999875 21 345556655556655432 333 22221 1111112234689987653322
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
..++.++.++-|+|+|||++++.
T Consensus 99 ------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 ------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 23568999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.4e-05 Score=76.07 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=57.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC--cccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP--RTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp--~t~Dl 545 (629)
+.++ .+|||+|||+|.+++.|++. +- .-.|+.+|..+..+..+.++ |+ +-+.+ +..+..++ ..||+
T Consensus 74 ~~~g--~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 74 LKEG--MKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAPYDR 148 (212)
T ss_pred CCCc--CEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCCcCE
Confidence 4444 36999999999999887654 10 00223333344566555443 43 22232 23344444 78999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|++.+. .+.+..++-+.|||||.+++--
T Consensus 149 I~~~~~---------~~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAA---------GPDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCC---------cccchHHHHHhhCCCcEEEEEE
Confidence 998433 3445567778999999999853
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=77.03 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=70.8
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.+|||+|||.|.++.+|+.. +- .+|+.+|.++..+..+.+. |+ |-+++ |+.+ ..| .+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---ALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hCCCCCccEEEECC
Confidence 46999999999999999765 22 3456667666677666544 54 34444 4333 344 6899998752
Q ss_pred cccc------------cCC---------C-cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcC
Q 006834 551 VFSI------------YQD---------R-CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGM 597 (629)
Q Consensus 551 ~fs~------------~~~---------~-c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l 597 (629)
=+.. +.. . -....++.++-++|+|||.+++--..+ ...+.+++...
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 1110 000 0 113468899999999999999954333 33577776654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=80.47 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=65.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC---cEeEEEeecCcHHHHHHHHH----cC--CCeEEEEecCCCCCCCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI---LTMSFARRDTHEAQVQFALE----RG--VPAMIGVISSKRLPYPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~---~~v~i~gvDiS~~~i~~A~e----rg--~~~~~~v~d~~~Lp~pd~sFDlV~~s 293 (629)
...|||||||+|-+....++.+. ....+++++-++.++...++ ++ ..+++..+|++.+..+ ...|+|++=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 35799999999998877666541 24567888999877765533 22 4689999999988765 489999981
Q ss_pred --CcccccccCHHHHHHHHHhcccCCcEEE
Q 006834 294 --GCLIPWYMYDGLYLLEVDRVLRPGGYWI 321 (629)
Q Consensus 294 --~~L~h~~~d~~~~L~el~RvLKPGG~li 321 (629)
..+ -..+--...|....|.|||||.++
T Consensus 266 lLGsf-g~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSF-GDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTT-BTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCc-cccccCHHHHHHHHhhcCCCCEEe
Confidence 112 111122357888999999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00031 Score=70.20 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=81.9
Q ss_pred cEeecCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHH
Q 006834 184 WIQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFA 263 (629)
Q Consensus 184 Wv~~~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A 263 (629)
..+..|-.+.+.-.-.+|..+-..-...|.+.+. ++ .+|||+.||.|.|+..+++.+. ...+.++|+++.+++..
T Consensus 67 ~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~--~~--e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L 141 (200)
T PF02475_consen 67 IHKENGIRFKVDLSKVYFSPRLSTERRRIANLVK--PG--EVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYL 141 (200)
T ss_dssp EEEETTEEEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHH
T ss_pred EEEeCCEEEEEccceEEEccccHHHHHHHHhcCC--cc--eEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHH
Confidence 3455666777777778887776666667776643 23 4999999999999999998321 12356669999999988
Q ss_pred HHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEE
Q 006834 264 LER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWI 321 (629)
Q Consensus 264 ~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~li 321 (629)
++. +. .+....+|...+.. .+.||-|++.. +..-..+|..+.+++++||.+-
T Consensus 142 ~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 142 KENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 754 22 36677888877754 78999998754 2233468899999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00027 Score=74.19 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=85.2
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
..|||+|||.|.++.+|+.. +- .+|..+|.+...+.++.+. |+ +-.++ ||.+.+ + ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---AGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---cCCCccEEEECC
Confidence 36999999999999999864 21 2455666665677666653 44 33343 665543 4 3799987641
Q ss_pred -------------cccccCCC---------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHh-cCCCeEEEeecC
Q 006834 551 -------------VFSIYQDR---------CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITE-GMRWKSQIMDHE 607 (629)
Q Consensus 551 -------------~fs~~~~~---------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~-~l~w~~~~~~~e 607 (629)
++...... -.+..++.++-++|+|||++++--..+....+++++. ...|....+ ..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~ 269 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GR 269 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ec
Confidence 11100000 1245688999999999999999766666667777766 456753221 22
Q ss_pred CCCCCCceEEEEEec
Q 006834 608 SGPFNPEKILFAAKT 622 (629)
Q Consensus 608 ~~~~~~e~~l~~~K~ 622 (629)
| -.+.++++++++.
T Consensus 270 D-~~g~~R~~~~~~~ 283 (284)
T TIGR00536 270 D-LNGKERVVLGFYH 283 (284)
T ss_pred C-CCCCceEEEEEec
Confidence 2 2357889888753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00034 Score=73.57 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=62.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhh-cccceeccccccCCCCC---cccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYER-GLIGTYQDWCEAFSTYP---RTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~er-gli~~~~~~~e~f~~yp---~t~Dl 545 (629)
|.++. +|||+|||.|+|..+|++. .|+.+-+.+.-.. +++.++.+| +++.+..|.+... .|+ .++|+
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~-dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDv 205 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR-DLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDV 205 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH-HHHHHhhhcCCCEEEECCccChh-hhhcccCCCCE
Confidence 56665 5999999999999999875 2666554432221 356666554 5555555644321 122 57898
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
|=++-. ..-...-+++|+.|+|||||+|+|.
T Consensus 206 V~~Dva-----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA-----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC-----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 755331 1112334677999999999999994
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.9e-05 Score=73.95 Aligned_cols=93 Identities=24% Similarity=0.290 Sum_probs=62.4
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeecccc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
.+..+. +|||+|||.|.+..+|++. ++ ++..+|.++.++..+.++|+--+..|..+.+..++ ++||+|-+.++
T Consensus 10 ~i~~~~--~iLDiGcG~G~~~~~l~~~~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 10 LIPPGS--RVLDLGCGDGELLALLRDEKQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred hcCCCC--EEEEeCCCCCHHHHHHHhccCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 344443 6999999999999999754 32 33455666578888888876222223333343455 79999999887
Q ss_pred ccccCCCcCHHHHHHHHhhcccC
Q 006834 552 FSIYQDRCDITNILLEMDRILRP 574 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrP 574 (629)
|.... +...+|.||-|++++
T Consensus 85 l~~~~---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 85 LQATR---NPEEILDEMLRVGRH 104 (194)
T ss_pred hHcCc---CHHHHHHHHHHhCCe
Confidence 75433 467888888777664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=6.2e-05 Score=74.25 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=71.6
Q ss_pred cccCCCCeeEEEeecccchhHHhhhhC-CCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeeccc
Q 006834 473 GLFHKGRYRNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 473 ~~~~~~~~R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.-|.+|+. |||+|||.|.+-++|.+ ++|-+ ..++.....+....+||+-=+.+|.=+.+..|| .+||.+=.+.
T Consensus 9 ~~I~pgsr--VLDLGCGdG~LL~~L~~~k~v~g---~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 9 EWIEPGSR--VLDLGCGDGELLAYLKDEKQVDG---YGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred HHcCCCCE--EEecCCCchHHHHHHHHhcCCeE---EEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 34667764 99999999999999987 56644 334455567899999999644458889999999 9999865533
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.+... -..+.+|.||-|| |...|++
T Consensus 84 tLQ~~---~~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 84 TLQAV---RRPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred HHHhH---hHHHHHHHHHHHh---cCeEEEE
Confidence 22221 2346799999666 6688887
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=79.82 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=80.2
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
.++|+|||.|....+++.... ....++|.++..+..+.+.. ....++..+....|++++.||.+.+..+..|
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 799999999999999887642 24466699998888776532 2345577788888999999999999999988
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEE
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.. +....+.|+.|+++|||+++..
T Consensus 191 ~~-~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 191 AP-DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CC-cHHHHHHHHhcccCCCceEEeH
Confidence 87 8899999999999999999986
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=73.08 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=69.6
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-------cceeccccccCCCCCcccceeeccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-------IGTYQDWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-------i~~~~~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
-.+|||+|||.|.++.+|++.+. .|..+|.++.++..+.++.- +...+ ..+...|.+||+|=+..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEV---NDLLSLCGEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CChhhCCCCcCEEEEhhHH
Confidence 45799999999999999998754 45667777788888877632 22222 3444445889988775555
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
..+ ...++..++.++.|+++|++++.+...
T Consensus 130 ~~~-~~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 130 IHY-PASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred HhC-CHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 433 234567899999999999988887643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=75.75 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=75.7
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ |.+++ |+ +...| .+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEECC
Confidence 46999999999999999865 21 2455666665677666554 55 33333 33 23445 5899988752
Q ss_pred cccc------------cC---------CCc-CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeec
Q 006834 551 VFSI------------YQ---------DRC-DITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDH 606 (629)
Q Consensus 551 ~fs~------------~~---------~~c-~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~ 606 (629)
=+.. +. +.. ....++.++-++|+|||.+++--..+. ..+++++....|.-.-+++
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 1110 00 001 124588999999999999998654433 5788887765554444443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00026 Score=69.81 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc--
Q 006834 189 GHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-- 266 (629)
|.++..|.+.. .....+...+.+-++|....-.+.++||+-||+|.++.+.+.+|.. .++.+|.+...++..+++
T Consensus 10 gr~l~~p~~~~-~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~ 86 (183)
T PF03602_consen 10 GRKLKTPKGDN-TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLE 86 (183)
T ss_dssp T-EEE-TT--T-S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHH
T ss_pred CCEecCCCCCC-cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHH
Confidence 44555554422 2344566677777777643112349999999999999999999976 446679999999988865
Q ss_pred --CC--CeEEEEecCCC-CC---CCCCCeeEEEecCcccccccCH--HHHHHHHH--hcccCCcEEEEEeC
Q 006834 267 --GV--PAMIGVISSKR-LP---YPARAFDMAHCSGCLIPWYMYD--GLYLLEVD--RVLRPGGYWILSGP 325 (629)
Q Consensus 267 --g~--~~~~~v~d~~~-Lp---~pd~sFDlV~~s~~L~h~~~d~--~~~L~el~--RvLKPGG~liis~P 325 (629)
+. .+.+...|... +. .....||+|++-.-+ .... ..++..+. .+|+++|.+++...
T Consensus 87 ~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY---~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 87 KLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPY---AKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--ST---TSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCc---ccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 22 35666666422 21 246899999987643 3232 55677776 79999999999864
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00022 Score=71.55 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=66.0
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCCcccceeeccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
-.+|||+|||.|.++.+|++.+. .|..+|.+++++..+.++ |+ |...+ ..+...+.+||+|.+..+|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEV---GDLESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEE---cCchhccCCcCEEEEcchh
Confidence 35799999999999999988764 366667666788877765 22 22222 2344445889999987777
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
..+. .-.+..++.++-|++++++.+.+..
T Consensus 138 ~~~~-~~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 138 IHYP-QEDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred hcCC-HHHHHHHHHHHHhhcCCeEEEEECC
Confidence 4433 2356778899999887666555443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00018 Score=74.31 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=82.3
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cccceec-cccccCCC-CCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQ-DWCEAFST-YPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gli~~~~-~~~e~f~~-yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||+|.++.+|++. +- .+|+.+|.++..+..+.+. |+ .+++ |+.+.+.. ....||+|=++==+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~-~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGG-TVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCC-EEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888753 21 2345556655666655432 32 2333 44433321 235799987654321
Q ss_pred c-------------cCCCcC----------HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecCCC
Q 006834 554 I-------------YQDRCD----------ITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESG 609 (629)
Q Consensus 554 ~-------------~~~~c~----------~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~ 609 (629)
. +..+.. +..++..+.++|+|||.+++--..+....+..++....|+..+..|++-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 1 111111 3468888899999999999976666677899999989999998888864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00064 Score=70.66 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=69.8
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecCCCCCCCCCCeeEE
Q 006834 220 GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISSKRLPYPARAFDMA 290 (629)
Q Consensus 220 ~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~~~Lp~pd~sFDlV 290 (629)
-+.+++||=||.|.|..+++++++.- .++-+|++++.++.+++- .+++.+.. ... .-..++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCcCCEE
Confidence 34567999999999999999999853 667789999999999973 23344433 111 1123689999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+.-.. .+..+.+.++|.|+|||.++...
T Consensus 144 IvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 144 ICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 97532 34678899999999999999854
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00026 Score=74.89 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=77.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC------CcEeEEEeecCcHHHHHHHHHc----CC---CeEE
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD------ILTMSFARRDTHEAQVQFALER----GV---PAMI 272 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g------~~~v~i~gvDiS~~~i~~A~er----g~---~~~~ 272 (629)
....+.+.+++....+. +|||..||+|.|...+.+.- .....+.|+|+++.++..|+-+ +. ...+
T Consensus 32 ~~i~~l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 55567777777554444 89999999999988887631 1234778999999999988743 21 2346
Q ss_pred EEecCCCCCCC--CCCeeEEEecCccccc--cc-----------------C-HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 273 GVISSKRLPYP--ARAFDMAHCSGCLIPW--YM-----------------Y-DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 273 ~v~d~~~Lp~p--d~sFDlV~~s~~L~h~--~~-----------------d-~~~~L~el~RvLKPGG~liis~P~ 326 (629)
...|....+.. .+.||+|+++.-+... .. . ...++..+.+.|++||.+.+..|.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 66665544432 4789999996655322 10 0 124888999999999999888763
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00047 Score=72.46 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=97.0
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH---h-hccccee
Q 006834 454 LREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY---E-RGLIGTY 529 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---e-rgli~~~ 529 (629)
...||+.+-..+. ..+. .... +|||||||+|--|.+|+...-- .+|..+|-++.-+.++. + .|+.-++
T Consensus 92 Pr~dTe~Lve~~l---~~~~---~~~~-~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 92 PRPDTELLVEAAL---ALLL---QLDK-RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred cCCchHHHHHHHH---Hhhh---hcCC-cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 3567777776665 1111 1111 8999999999999999876221 46677777655555542 2 3542222
Q ss_pred ccccccCCCCCcccceeeccc----------------------cccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH
Q 006834 530 QDWCEAFSTYPRTYDLIHASG----------------------VFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEML 587 (629)
Q Consensus 530 ~~~~e~f~~yp~t~Dl~H~~~----------------------~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~ 587 (629)
.--+.-|+..+..||+|-++= +|+.....--+..++.+..++|+|||++++....+..
T Consensus 164 ~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~ 243 (280)
T COG2890 164 VVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG 243 (280)
T ss_pred EEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH
Confidence 211134555666888865421 1221111112345899999999999999998777777
Q ss_pred HHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 588 VKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 588 ~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
..+++++....+ ...+.....-.+.+.+.++++
T Consensus 244 ~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 244 EAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 889999888886 333333333335667766654
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00017 Score=74.19 Aligned_cols=92 Identities=23% Similarity=0.462 Sum_probs=71.5
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhccc-ceeccccccCCCCCcccceeeccccccccCC
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLI-GTYQDWCEAFSTYPRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli-~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~ 557 (629)
+..++||+|||-|+.-+.|+.. .-+|..++.+..|.....+||.- =...+|-+. +..||+|-|-.|. +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 5667999999999999999763 23355667777899999999992 122245532 4679999996665 6
Q ss_pred CcCHHH-HHHHHhhcccCCcEEEEE
Q 006834 558 RCDITN-ILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 558 ~c~~~~-~l~e~dRiLrPgG~~i~~ 581 (629)
||+.+. +|.+|-+.|+|+|.+|+.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 899876 888999999999999996
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00087 Score=70.43 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=75.5
Q ss_pred CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-CCCCCCeeEE
Q 006834 221 GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-PYPARAFDMA 290 (629)
Q Consensus 221 g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p~pd~sFDlV 290 (629)
+.+++||-||-|.|..++++++... +-.++.+|+++..++.|++.- +.+.+...|..++ .-...+||+|
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 3457999999999999999999874 346778899999999999752 3456666665443 2223489999
Q ss_pred EecCccccccc----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~ 324 (629)
++-..= +..+ ....+++.++|.|+++|.++...
T Consensus 154 i~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 154 IVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 973321 2111 12679999999999999999873
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=77.28 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=62.8
Q ss_pred CCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHH----HhhcccceeccccccCC--CCCcccceeecc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAI----YERGLIGTYQDWCEAFS--TYPRTYDLIHAS 549 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~ergli~~~~~~~e~f~--~yp~t~Dl~H~~ 549 (629)
....+.|||+|||.|.++.+++++ |- .+++-.|.+ ..++.+ .+.|+-.-++-.+..|. .+|. +|++-..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~~-~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~ 222 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPE--LDSTILNLP-GAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFC 222 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCC--CEEEEEecH-HHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeE
Confidence 344568999999999999999776 21 122333433 455544 44566332222223332 3554 6986554
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+++-.+.. -....+|.++-|.|||||.++|-|.
T Consensus 223 ~~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 223 RILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 54433322 1335699999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0011 Score=66.41 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=72.2
Q ss_pred HHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--
Q 006834 464 RMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-- 540 (629)
Q Consensus 464 ~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-- 540 (629)
.|+.+.+.+..... .-.|=|||||-+-.|+++.+. .|.-.-+++.+.. +.. |. ...-|
T Consensus 59 Pvd~iI~~l~~~~~--~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~--------------Vta--cd-ia~vPL~ 119 (219)
T PF05148_consen 59 PVDVIIEWLKKRPK--SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR--------------VTA--CD-IANVPLE 119 (219)
T ss_dssp HHHHHHHHHCTS-T--TS-EEEES-TT-HHHHH--S---EEEEESS-SSTT--------------EEE--S--TTS-S--
T ss_pred cHHHHHHHHHhcCC--CEEEEECCCchHHHHHhcccCceEEEeeccCCCCC--------------EEE--ec-CccCcCC
Confidence 34445544432222 235999999999999887643 4666666665332 121 21 13334
Q ss_pred -cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCCeEEEeecCCCCCCCceE
Q 006834 541 -RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE---MLVKIRSITEGMRWKSQIMDHESGPFNPEKI 616 (629)
Q Consensus 541 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~ 616 (629)
.+.|++- |.+.-=.-+..+.|.|..|||||||.++|.+-.. ..+...+.++++..+....|..+ .--.+
T Consensus 120 ~~svDv~V----fcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~~F~~ 192 (219)
T PF05148_consen 120 DESVDVAV----FCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---KHFVL 192 (219)
T ss_dssp TT-EEEEE----EES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---TTEEE
T ss_pred CCceeEEE----EEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---CeEEE
Confidence 7888743 2222223578899999999999999999975443 34455566788888887666543 23345
Q ss_pred EEEEec
Q 006834 617 LFAAKT 622 (629)
Q Consensus 617 l~~~K~ 622 (629)
+.-+|.
T Consensus 193 f~F~K~ 198 (219)
T PF05148_consen 193 FEFKKI 198 (219)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 555554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0003 Score=68.49 Aligned_cols=114 Identities=18% Similarity=0.164 Sum_probs=64.5
Q ss_pred hHHHHHHHHhhcC-ccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecC------
Q 006834 205 ADAYIDNINELIP-LTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISS------ 277 (629)
Q Consensus 205 a~~~i~~I~~lL~-~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~------ 277 (629)
+...+..+.+... ...+...+|||+||++|.|+..+++++.....+.++|+.+. .....+.+.++|.
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~~~~~~~ 78 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDITNPENI 78 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGGEEEEHS
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeecccchhhHH
Confidence 3334555666666 34445579999999999999999999843446677798755 1111222222221
Q ss_pred CCCC--C--CCCCeeEEEecCcc---cccccCH-------HHHHHHHHhcccCCcEEEEEe
Q 006834 278 KRLP--Y--PARAFDMAHCSGCL---IPWYMYD-------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 278 ~~Lp--~--pd~sFDlV~~s~~L---~h~~~d~-------~~~L~el~RvLKPGG~liis~ 324 (629)
..+. + ..+.||+|+|-.+. .+...+. ...+.-+...|+|||.+++-.
T Consensus 79 ~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 79 KDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp HHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred HhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1111 1 22689999995522 1111111 124455567899999998865
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00012 Score=73.48 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=57.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
+..+. .|||+|||+|.+++.|++..=---.|+.+|..+..+..+.+ .|+ +-+.+ |..+.+.. ...||+|+
T Consensus 75 ~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii 151 (215)
T TIGR00080 75 LKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIY 151 (215)
T ss_pred CCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEE
Confidence 44444 59999999999999987651000013344444455555443 354 22333 22222111 26899998
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+++. .+.+..++-+.|+|||.+|+-
T Consensus 152 ~~~~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 152 VTAA---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred EcCC---------cccccHHHHHhcCcCcEEEEE
Confidence 7432 345566788999999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00018 Score=71.88 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=54.8
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHH----hhcc---cceec-cccccCCCCCcccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIY----ERGL---IGTYQ-DWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~----ergl---i~~~~-~~~e~f~~yp~t~Dl~H~~ 549 (629)
..|||+|||+|.+++.|++. +- .|+.+|..++++..+. +.|+ +-+++ |..+.+.. ..+||.|.++
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g---~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 149 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRG---KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVT 149 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEc
Confidence 35999999999999887653 11 2334444444554443 3354 23333 32222221 2689999985
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+.+ +.+.-|+-|+|+|||.+++-.
T Consensus 150 ~~~---------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAA---------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCc---------chhhHHHHHhcCcCcEEEEEE
Confidence 443 334457889999999999853
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00069 Score=72.27 Aligned_cols=97 Identities=20% Similarity=0.040 Sum_probs=74.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-CCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
....+|+|.|.|+.+..++..... +.+++.....+-.+++.. ..+..+-+|..+- .|. -|+|++-++++||.+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~---ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH---IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC---CceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCCh
Confidence 458999999999999999996543 455588888877776654 5566666665433 343 359999999999995
Q ss_pred C-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 302 Y-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 302 d-~~~~L~el~RvLKPGG~liis~P 325 (629)
+ -..+|+++...|+|||.+++...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4 36799999999999999999754
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0027 Score=62.61 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=89.8
Q ss_pred cCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 188 EGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 188 ~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
.|..+.+|.+.+ .....+...+.+-+++....-.+.++||+-+|+|.++.+.+.+|... .+.+|.+...++..+++
T Consensus 10 kgr~L~~p~~~~-~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~--~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 10 KGRKLKTPDGPG-TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAAR--VVFVEKDRKAVKILKENL 86 (187)
T ss_pred cCCcccCCCCCC-cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCce--EEEEecCHHHHHHHHHHH
Confidence 345556665422 34455677778888876521223499999999999999999999763 45679999999998875
Q ss_pred ---C--CCeEEEEecCCCC-CCCCC--CeeEEEecCcccccccCHHHHHHH--HHhcccCCcEEEEEeCC
Q 006834 267 ---G--VPAMIGVISSKRL-PYPAR--AFDMAHCSGCLIPWYMYDGLYLLE--VDRVLRPGGYWILSGPP 326 (629)
Q Consensus 267 ---g--~~~~~~v~d~~~L-p~pd~--sFDlV~~s~~L~h~~~d~~~~L~e--l~RvLKPGG~liis~P~ 326 (629)
+ .+..+...|+... +-... .||+|+.-.-+..-..+....+.. -..+|+|+|.+++....
T Consensus 87 ~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 87 KALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 3 3456666665532 22222 599999877553111112333333 56789999999998653
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00031 Score=70.25 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=57.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC--cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP--RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp--~t~Dl~H~~~~f 552 (629)
..|||+|||+|.+++.|.+..- .|..+|..++.+..+.++ |+ +.+.+. ..+..+| ..||+|.++..
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~- 153 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAA- 153 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccC-
Confidence 4699999999999988766521 344445544566655543 44 333331 2234444 68999887443
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+.+..++-+.|+|||.+++.-
T Consensus 154 --------~~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 154 --------APEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred --------chhhhHHHHHhcCCCcEEEEEE
Confidence 2445567789999999999853
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=73.03 Aligned_cols=98 Identities=23% Similarity=0.327 Sum_probs=82.9
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
++|-+|||.-.+...+.+.|.. .|+.+|+|+..++....++ ....+...|...+.|++++||+|+.-..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 7999999999999999999876 5577799999999888775 346778889999999999999999988887776
Q ss_pred cCHH---------HHHHHHHhcccCCcEEEEEe
Q 006834 301 MYDG---------LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 301 ~d~~---------~~L~el~RvLKPGG~liis~ 324 (629)
.+.. ..+.++.|+|+|||.++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 5522 35799999999999987754
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=63.05 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+..+||||||+|..+..|++......-..++|+++.+.+..++ ++..+..++.|...- +..++.|+++.+.-+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 4579999999999999999864322234567999999887553 455556666664332 22389999998776543
Q ss_pred cccCH--------------------HHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WYMYD--------------------GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~~d~--------------------~~~L~el~RvLKPGG~liis~P 325 (629)
-..++ .+++..+..+|.|.|.|++.+-
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 33221 2467778889999999999853
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00096 Score=69.09 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.|.+.+...+++ +|||||+|.|.++..|++++..+ +++++++.+++..+++. .++.+..+|+.+.++
T Consensus 16 ~~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v---~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 16 KNVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARV---TAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeE---EEEEeCHHHHHHHHHhcccccceEEEeCchhcCcc
Confidence 44577888877766544 89999999999999999998764 45599999999998873 568888899988888
Q ss_pred CCC-CeeEEEecCcc
Q 006834 283 PAR-AFDMAHCSGCL 296 (629)
Q Consensus 283 pd~-sFDlV~~s~~L 296 (629)
++- .++.|+++.-.
T Consensus 91 ~~l~~~~~vVaNlPY 105 (259)
T COG0030 91 PSLAQPYKVVANLPY 105 (259)
T ss_pred hhhcCCCEEEEcCCC
Confidence 754 68899987744
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=68.23 Aligned_cols=119 Identities=16% Similarity=0.284 Sum_probs=83.0
Q ss_pred eeEEEeecccchhHHhhhhCC-C-eEEEEecCCCCCCCchHHHHhhcc--------cceec-cccccCCCCC-cccceee
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-P-VWVMNVVPFHSNPDTLGAIYERGL--------IGTYQ-DWCEAFSTYP-RTYDLIH 547 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~-v~~mnv~~~~~~~~~l~~~~ergl--------i~~~~-~~~e~f~~yp-~t~Dl~H 547 (629)
...|||+|||.|..+-.|+++ + + -++.++-++.....+ .|.+ |.++| |.-+-....+ .+||+|=
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A-~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMA-QRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHH-HHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 566999999999998888877 3 3 223333332222222 2222 55665 2222222223 4699987
Q ss_pred cccccc---------------ccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 548 ASGVFS---------------IYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 548 ~~~~fs---------------~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
|+==|= .+...|++++++.=.-++|||||++.+=-+.+.+..+-.++++++|..+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 754432 3445689999999999999999999999999999999999999999976
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0019 Score=72.55 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=73.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCCCCeeEEE----e
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPARAFDMAH----C 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd~sFDlV~----~ 292 (629)
+.+|||+++|.|.=+..|++.....-.+++.|+++.-++..+++ |. ++.+...|...+. ...+.||.|+ |
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 34999999999999999988632222567789999988887754 43 3556666666553 2346799999 5
Q ss_pred cCc--cc-------ccccC--------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 293 SGC--LI-------PWYMY--------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 293 s~~--L~-------h~~~d--------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+.. +. .|..+ ...+|..+.+.|||||+++.++...+
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 422 11 12111 13588999999999999999875443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=65.33 Aligned_cols=134 Identities=16% Similarity=0.101 Sum_probs=86.1
Q ss_pred HHHHHHHHhhcCccCC--CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCC
Q 006834 206 DAYIDNINELIPLTGG--NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYP 283 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g--~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~p 283 (629)
...++.+.+....... ...++|||||=+...... ..+ ...++.+|+++. .-.+.+.|....|.|
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~--~fdvt~IDLns~----------~~~I~qqDFm~rplp 98 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSG--WFDVTRIDLNSQ----------HPGILQQDFMERPLP 98 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCccc--ccC--ceeeEEeecCCC----------CCCceeeccccCCCC
Confidence 4456666655543221 235899999875543222 222 224567798741 123455666666654
Q ss_pred ---CCCeeEEEecCcccccccCH---HHHHHHHHhcccCCcE-----EEEEeCCCCccccccCccCcchhhhhHHHHHHH
Q 006834 284 ---ARAFDMAHCSGCLIPWYMYD---GLYLLEVDRVLRPGGY-----WILSGPPIHWKKYWRGWERTKEDLKQEQDTIED 352 (629)
Q Consensus 284 ---d~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~-----liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~ 352 (629)
+++||+|.|+.+|...+ ++ ..++..+.+.|+|+|. |+++.|..- ..+- -+...+.+..
T Consensus 99 ~~~~e~FdvIs~SLVLNfVP-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-v~NS---------Ry~~~~~l~~ 167 (219)
T PF11968_consen 99 KNESEKFDVISLSLVLNFVP-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-VTNS---------RYMTEERLRE 167 (219)
T ss_pred CCcccceeEEEEEEEEeeCC-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-hhcc---------cccCHHHHHH
Confidence 67999999999996665 54 5699999999999999 999887442 1111 1122456788
Q ss_pred HHHHhcceeecc
Q 006834 353 IAKRLCWKKLIE 364 (629)
Q Consensus 353 l~~~l~w~~v~~ 364 (629)
+.++++|..+..
T Consensus 168 im~~LGf~~~~~ 179 (219)
T PF11968_consen 168 IMESLGFTRVKY 179 (219)
T ss_pred HHHhCCcEEEEE
Confidence 899999976543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=69.00 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=79.0
Q ss_pred CeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh-ccc------ceec-cccccCCCCCcccceeecc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER-GLI------GTYQ-DWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er-gli------~~~~-~~~e~f~~yp~t~Dl~H~~ 549 (629)
.-+.|||+|||.|.++.+|++. +- +.+.-+|..+..+.++.+. ++. .+++ |.-+-+...|.+||+|=++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4567999999999999988764 32 3344445544688777765 222 1222 2112234456789998765
Q ss_pred cccccc-C-CCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 550 GVFSIY-Q-DRCDITNILLEMDRILRPEGTVIFR---DTVEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 550 ~~fs~~-~-~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
.|... . .......++.++-++|+|||.+++- ........++.+-+.+.-.+.++..+. ....|+++.|
T Consensus 144 -~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 144 -GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred -CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 34321 1 1122468999999999999999982 222222223333333332333333321 1347888877
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00028 Score=68.40 Aligned_cols=112 Identities=22% Similarity=0.337 Sum_probs=66.8
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCCC-cccceeecccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
-.+|||+|||+|-.+.+|+++ +-. .|..+|.+++.+..+.+ .++ +-+++ +..+...+ ..||+|=++-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~--~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~--~d~~~~~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDA--KVTAVDINPDALELAKRNAERNGLENVEVVQ--SDLFEALPDGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCE--EEEEEESBHHHHHHHHHHHHHTTCTTEEEEE--SSTTTTCCTTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCC--EEEEEcCCHHHHHHHHHHHHhcCcccccccc--ccccccccccceeEEEEccc
Confidence 345999999999999999876 221 23444544455555543 233 22333 33344445 99999887644
Q ss_pred ccccCC--CcCHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHh
Q 006834 552 FSIYQD--RCDITNILLEMDRILRPEGTVIF--RDTVEMLVKIRSITE 595 (629)
Q Consensus 552 fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~ 595 (629)
|..... ...++.++.+.-++|+|||.+++ ......-..++++..
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 432221 12357799999999999998854 433434444555554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00055 Score=68.54 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=98.0
Q ss_pred HhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc-----cceeccccccCCCCCccc
Q 006834 470 KIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL-----IGTYQDWCEAFSTYPRTY 543 (629)
Q Consensus 470 ~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl-----i~~~~~~~e~f~~yp~t~ 543 (629)
.++..|.....+.|.|+|||.|.--+.|+.+ |. --|..+|++..|+..+.+|+. .|..++||-. +..
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~-----~~~ 93 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE-----QPT 93 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC-----Ccc
Confidence 3455577788999999999999999999887 33 236788999999999999987 5778888832 568
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE--eCHH--HHHHHHHHHhcCCCeEEEe
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR--DTVE--MLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~--~~~~~~~~~~~l~w~~~~~ 604 (629)
|||-++-+|--..+. ..+|-.+=--|.|||.+-+. |+.+ ...-|.+.++..-|...+-
T Consensus 94 dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~ 155 (257)
T COG4106 94 DLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELG 155 (257)
T ss_pred chhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhC
Confidence 999999999876666 66777777789999999886 4433 4677888888888876543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00099 Score=72.95 Aligned_cols=101 Identities=13% Similarity=-0.000 Sum_probs=74.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCCC----CCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRLP----YPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~Lp----~pd~sFDlV~ 291 (629)
+++|||+-|=||.|+.+.+..|.. +++.+|.|...++.|+++ +. ...|+++|+..+- -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 449999999999999999999873 335559999999999976 32 3678888865432 2245999999
Q ss_pred ecCc-cc-------ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 292 CSGC-LI-------PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 292 ~s~~-L~-------h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.-.- +. ....+-..++..+.++|+|||.+++++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 7221 10 0011123588999999999999999864
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00028 Score=71.20 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=59.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH-Hhhcccce--------------eccccccCCCCC----c
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI-YERGLIGT--------------YQDWCEAFSTYP----R 541 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~-~ergli~~--------------~~~~~e~f~~yp----~ 541 (629)
..|||+|||.|-.|.+|++++. +|+.+|.++..++.+ .+.|+-.. +.-+|..|..++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 3699999999999999999965 455555554555543 34454211 111344443333 3
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+||++=..++|-. -+....+.++..|-|+|||||.+++
T Consensus 113 ~fD~i~D~~~~~~-l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIA-LPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhcc-CCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 4665433333321 1444567799999999999997444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0049 Score=60.91 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCC-CeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGV-PAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
+++|||+|.|.-+.-|+=..+. ..++.+|....-+.+.++ -+. ++.+....++. +....+||+|++-.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 7999999999888887765543 256778999877776653 244 47777777666 4557899999985543
Q ss_pred ccCHHHHHHHHHhcccCCcEEEEE
Q 006834 300 YMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 300 ~~d~~~~L~el~RvLKPGG~liis 323 (629)
....++.-+...|++||.+++.
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 4567888999999999999886
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.002 Score=73.43 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=68.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC-------cEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC--C---CCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI-------LTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR--L---PYPAR 285 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~-------~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~--L---p~pd~ 285 (629)
..+|||.|||+|.|...++++.. ....+.++|+++..+..|+.+ + ....+...+... + .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999999998887532 125678899999999998764 1 122333222111 1 11125
Q ss_pred CeeEEEecCcccccccCH---------------------------------------------HHHH-HHHHhcccCCcE
Q 006834 286 AFDMAHCSGCLIPWYMYD---------------------------------------------GLYL-LEVDRVLRPGGY 319 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~---------------------------------------------~~~L-~el~RvLKPGG~ 319 (629)
.||+|+++.-+.-...+. ..++ ....++|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 799999977654321100 0123 457899999999
Q ss_pred EEEEeCCC
Q 006834 320 WILSGPPI 327 (629)
Q Consensus 320 liis~P~~ 327 (629)
+.+..|..
T Consensus 192 ~~~I~P~s 199 (524)
T TIGR02987 192 VSIISPAS 199 (524)
T ss_pred EEEEEChH
Confidence 99998854
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0022 Score=67.16 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=68.1
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeE---EEE-ecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAM---IGV-ISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~---~~v-~d~~~Lp 281 (629)
.+.|.+.++. -.+++|||+|||.|.-+..+.+.-.....++.+|.|+.|++.++.- ..... +.. .-....+
T Consensus 22 l~El~~r~p~--f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 22 LSELRKRLPD--FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHhCcC--CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 4444444433 2356899999999976555544322344678889999999988753 21111 100 0011122
Q ss_pred CCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+. ..|+|+++++|..+... ...+++.+-+.+.+ +|+|+.|.
T Consensus 100 ~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 100 FP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred CC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 22 33999999999888752 23466666666655 88888653
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00062 Score=72.15 Aligned_cols=99 Identities=11% Similarity=0.167 Sum_probs=64.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh---ccc-----ceeccccccCCCCCccc----c-eee
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER---GLI-----GTYQDWCEAFSTYPRTY----D-LIH 547 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er---gli-----~~~~~~~e~f~~yp~t~----D-l~H 547 (629)
.+|||+|||+|.++..|++.-.-..+++++|.+..+|..+.++ ... ++..|-++.+ .+|..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEEE
Confidence 3699999999999999987621124688899998899888775 221 1222333222 233333 2 344
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+...|.... .-+...+|.++-+.|+|||.++|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 434444432 334567999999999999999985
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0016 Score=70.71 Aligned_cols=107 Identities=10% Similarity=0.004 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L 280 (629)
..+.+.+.+.+...+ .+|||++||+|.++..|++... .++++|+++++++.|+++ +. ++.+...|...+
T Consensus 184 ~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 184 IKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 444555555553221 2699999999999998887653 567789999999999875 33 577877776542
Q ss_pred C--------C---C-----CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 P--------Y---P-----ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p--------~---p-----d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
- + . ...||+|+.-.--..+ ...++..+. +|++.++++-
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~---~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGL---DPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCCCCC---cHHHHHHHH---cCCcEEEEEc
Confidence 1 1 0 1237999875432111 234455544 4788888884
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00098 Score=68.72 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=78.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEec
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVIS 276 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d 276 (629)
..|.+.+..........+++||=||-|.|..+..+++... ...++.+|+++..++.|++- ..++.+...|
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 4455555433222223466999999999999999998752 33677889999999999863 2467888877
Q ss_pred CCCCC-CCCC-CeeEEEecCccccccc----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRLP-YPAR-AFDMAHCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~Lp-~pd~-sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~ 324 (629)
....- -..+ +||+|+.-..- +... ....+++.+.+.|+|||.+++-.
T Consensus 139 g~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 64431 2233 89999973322 1111 13579999999999999999875
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.001 Score=68.89 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=68.4
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH--------------------cCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE--------------------RGV 268 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e--------------------rg~ 268 (629)
+..+.+.+.....++.++||||||.-.+-..-+.. ..-.|+..|.++..++..++ .|.
T Consensus 43 L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~ 120 (256)
T PF01234_consen 43 LKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGK 120 (256)
T ss_dssp HHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTS
T ss_pred HHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCC
Confidence 44455555443344669999999985442222222 23356777888877664331 010
Q ss_pred -------------Ce-EEEEecCCCCC-CCC-----CCeeEEEecCcccccccCHH---HHHHHHHhcccCCcEEEEEe
Q 006834 269 -------------PA-MIGVISSKRLP-YPA-----RAFDMAHCSGCLIPWYMYDG---LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 -------------~~-~~~v~d~~~Lp-~pd-----~sFDlV~~s~~L~h~~~d~~---~~L~el~RvLKPGG~liis~ 324 (629)
.+ .++..|..+.+ +.. ..||+|++++|++-...+.+ .+++.+.++|||||+|++.+
T Consensus 121 ~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 121 REKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01 24445655432 332 35999999999988877754 58999999999999999976
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00059 Score=69.07 Aligned_cols=95 Identities=9% Similarity=0.026 Sum_probs=63.3
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH-HHhhcccce--------------eccccccCCCCC----cc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA-IYERGLIGT--------------YQDWCEAFSTYP----RT 542 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~-~~ergli~~--------------~~~~~e~f~~yp----~t 542 (629)
.|||.|||.|--|.+|++++. +|+.+|.++.-++. ..++|+-.. ++-++..+..++ .+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 699999999999999999976 56666766555554 356777322 112344344332 46
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
||++-..++|... +....+.++..|.++|+|||.+++
T Consensus 117 fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 7776654444422 334567899999999999996443
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=69.77 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=63.5
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC-C-CC-------------
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL-P-YP------------- 283 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L-p-~p------------- 283 (629)
.+|||++||+|.++..|++... .++++|.++.+++.|+++ +. ++.+...|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3699999999999998887643 467779999999999875 33 577888776542 1 10
Q ss_pred -CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 284 -ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 284 -d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...||+|+.-.-... -...++..+.+ |++.++++-
T Consensus 285 ~~~~~D~v~lDPPR~G---~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 285 KSYNFSTIFVDPPRAG---LDDETLKLVQA---YERILYISC 320 (362)
T ss_pred cCCCCCEEEECCCCCC---CcHHHHHHHHc---cCCEEEEEe
Confidence 225899997553311 12345555543 788888884
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=65.82 Aligned_cols=120 Identities=19% Similarity=0.202 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhh-c----ccCCCCeeEEEeecccchhHHhhhhC-CCeEEEEecCCCCCCCchHHHHhhcc------c
Q 006834 459 ELWKDRMTYYKKID-G----LFHKGRYRNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNPDTLGAIYERGL------I 526 (629)
Q Consensus 459 ~~w~~~v~~y~~~~-~----~~~~~~~R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~ergl------i 526 (629)
......++.|++.+ . .++...---||.+|||+|.-=-++-. +++-|.-+-| .+++-+++-.+-- +
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDp---n~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDP---NEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCC---cHHHHHHHHHHHhhccCcce
Confidence 44455566666532 1 23333333489999999964444433 3444444444 3466666544321 2
Q ss_pred c-eeccccccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 527 G-TYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 527 ~-~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
. .+|.-.|.+...+ .+||.|-+.-+.- +.-+....|-|+-|||||||.+||-+..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC---Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLC---SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEe---ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2 4444456777666 8999866522221 2234456999999999999999997554
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0025 Score=65.86 Aligned_cols=84 Identities=17% Similarity=0.092 Sum_probs=65.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--C----CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--V----PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~----~~~~~v~d~~~ 279 (629)
...++.|.+-.+.++.. .|||+|.|||.++..|++.+..++.+ ++++.|+....+|. . .+.+.++|...
T Consensus 44 p~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~---E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAV---EIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEE---ecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 34466777666666666 99999999999999999999876655 99999999998873 2 25667777776
Q ss_pred CCCCCCCeeEEEecCcc
Q 006834 280 LPYPARAFDMAHCSGCL 296 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L 296 (629)
.++| .||.++++.-.
T Consensus 119 ~d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 119 TDLP--RFDGCVSNLPY 133 (315)
T ss_pred CCCc--ccceeeccCCc
Confidence 6655 69999986544
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.001 Score=62.70 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=62.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp 281 (629)
......|.+......| +.++|+|||.|.+.....-.+.. .+.|+|+.+++++.+.++. +++.+.+++...+-
T Consensus 34 asM~~~Ih~TygdiEg--kkl~DLgcgcGmLs~a~sm~~~e--~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle 109 (185)
T KOG3420|consen 34 ASMLYTIHNTYGDIEG--KKLKDLGCGCGMLSIAFSMPKNE--SVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE 109 (185)
T ss_pred HHHHHHHHhhhccccC--cchhhhcCchhhhHHHhhcCCCc--eEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh
Confidence 3334445555443334 48999999999887554444433 5577799999999998663 45678888888877
Q ss_pred CCCCCeeEEEecCcc
Q 006834 282 YPARAFDMAHCSGCL 296 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L 296 (629)
+..+.||.++.+.-+
T Consensus 110 ~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 110 LKGGIFDTAVINPPF 124 (185)
T ss_pred ccCCeEeeEEecCCC
Confidence 778999999987755
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=63.26 Aligned_cols=141 Identities=19% Similarity=0.266 Sum_probs=73.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCC-----eEEEEecCCCCCCCchHHHHhhcccc---eeccccccCCCCCccccee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYP-----VWVMNVVPFHSNPDTLGAIYERGLIG---TYQDWCEAFSTYPRTYDLI 546 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~-----v~~mnv~~~~~~~~~l~~~~ergli~---~~~~~~e~f~~yp~t~Dl~ 546 (629)
+..+.-.+|||+||+.|||..++.++. |+.+-+.|.+.. .....+ +|=+- +.....+.+..-.+.+|+|
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv 95 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-QNVSFI--QGDITNPENIKDIRKLLPESGEKFDLV 95 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-cceeee--ecccchhhHHHhhhhhccccccCccee
Confidence 556677899999999999999999886 345555544211 111111 22221 0111111222112589999
Q ss_pred eccccccccCCCcCHHH--------HHHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCCeEEEeecCCCCCCC
Q 006834 547 HASGVFSIYQDRCDITN--------ILLEMDRILRPEGTVIFR-----DTVEMLVKIRSITEGMRWKSQIMDHESGPFNP 613 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~--------~l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~ 613 (629)
-|++.+.....+-.-+. .|.=+-..|||||.+|+. +..+.+..++...+.+++- --.-.++...
T Consensus 96 ~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~---Kp~~sr~~s~ 172 (181)
T PF01728_consen 96 LSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV---KPPSSRSESS 172 (181)
T ss_dssp EE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE---E-TTSBTTCB
T ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE---ECcCCCCCcc
Confidence 99987664332211111 222334679999998884 2235666666666654332 1233455568
Q ss_pred ceEEEEEe
Q 006834 614 EKILFAAK 621 (629)
Q Consensus 614 e~~l~~~K 621 (629)
|.-|||.+
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 88998864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.003 Score=67.93 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=95.0
Q ss_pred cCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 188 EGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 188 ~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
+|-.|.+.-.-.||..+...-...+.++... |. +|||+-+|.|.|+..++..+... +.++|+++.+++..+++
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~--GE--~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTERARVAELVKE--GE--TVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENI 231 (341)
T ss_pred CCEEEEEchHHeEECCCchHHHHHHHhhhcC--CC--EEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHH
Confidence 3445555555567777766666667766654 44 99999999999999999998652 56779999999999875
Q ss_pred ---CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 267 ---GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 267 ---g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+. .+....+|........+.||-|++.... ....++....+.|++||.+.+..
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~-----~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK-----SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred HhcCccceeeEEeccHHHhhhccccCCEEEeCCCC-----cchhhHHHHHHHhhcCcEEEEEe
Confidence 22 2567788888877655889999975532 44678889999999999998764
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0035 Score=63.03 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=90.2
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccc--eeccccccCCCCCcccceeeccccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIG--TYQDWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~--~~~~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
+..+.-+-|||+|||+|--|+.|.+.+- -.+.+|.++.||.++.||-+=| ++.|..|.+++=|.|||-+-+.+-.
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 4444566799999999999999998863 1245677778999999976654 3348889999999999953321111
Q ss_pred ---cccCCCcC-----HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeE----EEeecCCCCCCCceEEEE
Q 006834 553 ---SIYQDRCD-----ITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKS----QIMDHESGPFNPEKILFA 619 (629)
Q Consensus 553 ---s~~~~~c~-----~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~----~~~~~e~~~~~~e~~l~~ 619 (629)
=+....|. +-.++--+...|++|+..++.=-.+....++.|...-.|.- .++|.-.+...+-..||.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 11122233 33356678999999999999844443344444444444433 245543333334444444
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0082 Score=61.14 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=100.6
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEE-EEecCCCCC
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMI-GVISSKRLP 281 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~-~v~d~~~Lp 281 (629)
+|+-.+...+... .. .-.++.+||+|+-||.|+..++++|.. .++++|..-.++..-.+..+.+.. ...+...+.
T Consensus 62 RG~~KL~~ale~F-~l-~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~ 137 (245)
T COG1189 62 RGGLKLEKALEEF-EL-DVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLT 137 (245)
T ss_pred cHHHHHHHHHHhc-Cc-CCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCC
Confidence 3444444444433 32 223459999999999999999999876 557889999888877766655443 223333332
Q ss_pred --CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCcccc----ccCccCcchhhhhHHHHHHHHHH
Q 006834 282 --YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKY----WRGWERTKEDLKQEQDTIEDIAK 355 (629)
Q Consensus 282 --~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~----~~~w~~~~e~l~~~~~~ie~l~~ 355 (629)
.-.+..|+|+|--.++. ...+|..+..+|+|+|.++.-.-|-.-..+ .++--++++........+.+.+.
T Consensus 138 ~~~~~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~ 213 (245)
T COG1189 138 PEDFTEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAK 213 (245)
T ss_pred HHHcccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHh
Confidence 11236789999766643 457899999999999988886533221111 22334556666667777888888
Q ss_pred Hhcceee
Q 006834 356 RLCWKKL 362 (629)
Q Consensus 356 ~l~w~~v 362 (629)
.++|...
T Consensus 214 ~~g~~~~ 220 (245)
T COG1189 214 ELGFQVK 220 (245)
T ss_pred hcCcEEe
Confidence 8888654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0024 Score=67.20 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C---CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G---VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g---~~~~~~v~d~~ 278 (629)
+.-...+.+... +++|||+-|=||.|+.+.+..|.. .++.+|.|..+++.|+++ + ....+.+.|+.
T Consensus 112 R~nR~~v~~~~~-----gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 112 RENRKWVRKYAK-----GKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp HHHHHHHHHHCT-----TCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred HhhHHHHHHHcC-----CCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 333445555432 349999999999999998888754 345669999999999975 3 24678877764
Q ss_pred CC-C--CCCCCeeEEEecCc-cc----ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RL-P--YPARAFDMAHCSGC-LI----PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~L-p--~pd~sFDlV~~s~~-L~----h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. . -..++||+|++-.- +. ....+-..++..+.++|+|||++++...
T Consensus 185 ~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 185 KFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 32 1 12468999998221 10 1111224578889999999999988754
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0097 Score=58.64 Aligned_cols=142 Identities=20% Similarity=0.217 Sum_probs=87.2
Q ss_pred Ccchhhchhh--HHHHHHHHHHHH-HhhcccCCCCeeEEEeecccchhHHhhhhC-CCeEEEEecCCCCCC---CchHHH
Q 006834 448 GITAEKLRED--NELWKDRMTYYK-KIDGLFHKGRYRNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNP---DTLGAI 520 (629)
Q Consensus 448 ~~~~~~f~~d--~~~w~~~v~~y~-~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~---~~l~~~ 520 (629)
|+..+.|..| ...-|+-|..-- ..| .+.++.+ ++|+|||+|+.+-.++- .+. .-|..++..+ ++.+.+
T Consensus 3 gipD~~F~~~~~~p~TK~EIRal~ls~L-~~~~g~~--l~DIGaGtGsi~iE~a~~~p~--~~v~AIe~~~~a~~~~~~N 77 (187)
T COG2242 3 GIPDELFERDEGGPMTKEEIRALTLSKL-RPRPGDR--LWDIGAGTGSITIEWALAGPS--GRVIAIERDEEALELIERN 77 (187)
T ss_pred CCCchhhccCCCCCCcHHHHHHHHHHhh-CCCCCCE--EEEeCCCccHHHHHHHHhCCC--ceEEEEecCHHHHHHHHHH
Confidence 4445556666 344454444211 112 3566764 99999999998876651 121 2334444432 233333
Q ss_pred Hhh-cc--cceecccc-ccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHh
Q 006834 521 YER-GL--IGTYQDWC-EAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITE 595 (629)
Q Consensus 521 ~er-gl--i~~~~~~~-e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~ 595 (629)
.+| |+ +-+...+- +.++..| ++|.+-. . ..-.++.||.....-|||||.+|.. -+.+...++-+.++
T Consensus 78 ~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI-----G--Gg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~ 149 (187)
T COG2242 78 AARFGVDNLEVVEGDAPEALPDLP-SPDAIFI-----G--GGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALE 149 (187)
T ss_pred HHHhCCCcEEEEeccchHhhcCCC-CCCEEEE-----C--CCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence 333 32 22333333 5566666 7776654 1 1267899999999999999999996 56677888888888
Q ss_pred cCCC-eEE
Q 006834 596 GMRW-KSQ 602 (629)
Q Consensus 596 ~l~w-~~~ 602 (629)
.+.+ ++.
T Consensus 150 ~~g~~ei~ 157 (187)
T COG2242 150 QLGGREIV 157 (187)
T ss_pred HcCCceEE
Confidence 8888 554
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0012 Score=69.84 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=68.3
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHH----HHhhcccceeccccccCCCCC-cccceeeccccccccC
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGA----IYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQ 556 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~----~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~ 556 (629)
+|||+|||+|-.|-+-++.+. -.|+.+|..+..+.. +..-|+-.-+. +. .....+ ..||+|-|+=+..
T Consensus 164 ~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~-~~~~~~~~~~dlvvANI~~~--- 236 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIE-VS-LSEDLVEGKFDLVVANILAD--- 236 (295)
T ss_dssp EEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEE-ES-CTSCTCCS-EEEEEEES-HH---
T ss_pred EEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEE-EE-EecccccccCCEEEECCCHH---
Confidence 799999999977655444432 123333443333333 33344422111 11 123334 8999988722211
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
-+..++-++.+.|+|||++|++--. +....|.+.++. .|+..-...+ +.-..|+++|+
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 1234556678999999999998432 234566666666 6766544333 24567777775
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00038 Score=66.65 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=86.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-CCCeEE--E---Eec----CCCCCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-GVPAMI--G---VIS----SKRLPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-g~~~~~--~---v~d----~~~Lp~pd~sFDlV~~ 292 (629)
+++||++|.|--.++..|....+...++.-.|.+++.++..++- ..+..+ . ++. ..+......+||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 45899999996666666655555556777889999998877652 212101 0 000 1111223468999999
Q ss_pred cCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhccee-ecccCceEEE
Q 006834 293 SGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKK-LIEKNDLAIW 371 (629)
Q Consensus 293 s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~-v~~~~~~aiw 371 (629)
+.|+ -+.+..+.++..+.+.|+|.|.-++..| +.+..++. +.+.....++.. +.+..+.+||
T Consensus 110 ADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsP------------RRg~sL~k----F~de~~~~gf~v~l~enyde~iw 172 (201)
T KOG3201|consen 110 ADCL-FFDEHHESLVDTIKSLLRPSGRALLFSP------------RRGQSLQK----FLDEVGTVGFTVCLEENYDEAIW 172 (201)
T ss_pred ccch-hHHHHHHHHHHHHHHHhCcccceeEecC------------cccchHHH----HHHHHHhceeEEEecccHhHHHH
Confidence 9999 5554567899999999999999888866 22233332 444445555544 3455566788
Q ss_pred eccC
Q 006834 372 QKPI 375 (629)
Q Consensus 372 qKp~ 375 (629)
||-.
T Consensus 173 qrh~ 176 (201)
T KOG3201|consen 173 QRHG 176 (201)
T ss_pred HHHH
Confidence 7643
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=66.34 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
.+.|||+|||+|.++...++.|.. .+.+++.| +|.+.|++. .. .+.+..+..+.+.+| ++.|+|++-..-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 458999999999999888888875 45666776 677777753 11 234444455665555 689999984332
Q ss_pred cccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.-+..+ --....-.+|.|+|.|.++=+.
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 112211 1112233459999999987653
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00098 Score=67.88 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=68.2
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC--C--eEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeecc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY--P--VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~--v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~ 549 (629)
.......++|+|+|+|.|.++.+++++ + ++++-. + ..++.+.+..=|...- ..-|.++|. +|++...
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p-~v~~~~~~~~rv~~~~--gd~f~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-----P-EVIEQAKEADRVEFVP--GDFFDPLPV-ADVYLLR 165 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE------H-HHHCCHHHTTTEEEEE--S-TTTCCSS-ESEEEEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-----H-hhhhcccccccccccc--ccHHhhhcc-ccceeee
Confidence 456678899999999999999999764 3 344433 2 3333444421122211 134588999 9999988
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCC--cEEEEEeC
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPE--GTVIFRDT 583 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPg--G~~i~~d~ 583 (629)
+++-.|.+. +...||..+-+.|+|| |.++|-|.
T Consensus 166 ~vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 166 HVLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SSGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 888877653 4567999999999999 99999754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0024 Score=67.34 Aligned_cols=95 Identities=19% Similarity=0.268 Sum_probs=70.0
Q ss_pred eEEEeecccchhHHhhhhCCCe-EEEEecCCCCCCCchHHHHhhccccee---ccc--c-ccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPV-WVMNVVPFHSNPDTLGAIYERGLIGTY---QDW--C-EAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~ergli~~~---~~~--~-e~f~~yp~t~Dl~H~~~~fs 553 (629)
|.|||+|||-|-+.-.|+..+- .|+-+=|.... ..++-+-+-++|.- |-. . |.++. ..+||+|=|.||+=
T Consensus 117 k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf--~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF--YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH--HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 4699999999999999998865 55666665443 66666666666521 111 1 44454 68999999999875
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+ |=+--+.|.++-..|||||.+|+-
T Consensus 194 --H-rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 --H-RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred --c-cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3 446678999999999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0058 Score=65.40 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=71.9
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC---cEeEEEeecCcHHHHHHHHHcC-----CCeEE--EEecCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI---LTMSFARRDTHEAQVQFALERG-----VPAMI--GVISSK 278 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~---~~v~i~gvDiS~~~i~~A~erg-----~~~~~--~v~d~~ 278 (629)
...|.+.++. ...++|+|||+|.=+..|++... ..+.++++|+|.++++.+.++- +.+.+ ..+|..
T Consensus 67 ~~~Ia~~i~~----~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASIPS----GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhcCC----CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 4455555432 33799999999988777665421 1346789999999999988652 22444 344432
Q ss_pred C----CCC--CCCCeeEEEec-CcccccccC-HHHHHHHHHh-cccCCcEEEEEe
Q 006834 279 R----LPY--PARAFDMAHCS-GCLIPWYMY-DGLYLLEVDR-VLRPGGYWILSG 324 (629)
Q Consensus 279 ~----Lp~--pd~sFDlV~~s-~~L~h~~~d-~~~~L~el~R-vLKPGG~liis~ 324 (629)
. ++- ......+++.- .++-++.+. ...+|+++.+ .|+|||.|++..
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 2 221 12345676653 345444422 3468999999 999999999964
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00084 Score=66.83 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=69.5
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCC----chHHHHhhcc--cceeccccccCC---C-C-Ccccceeecc
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPD----TLGAIYERGL--IGTYQDWCEAFS---T-Y-PRTYDLIHAS 549 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~----~l~~~~ergl--i~~~~~~~e~f~---~-y-p~t~Dl~H~~ 549 (629)
.+||+|||.|.|..+|+.. |= .|++.++-..+ .+..+..+|| +.+++ |.+.. . + |.+.|.||.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~--~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLR--GDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEE--S-CTTHHHHHSTTTSEEEEEE-
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEE--ccHHHHHhhcccCCchheEEE-
Confidence 7999999999999999754 11 25555554433 3445556677 33333 23322 1 2 388998887
Q ss_pred ccccc-------cCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcC
Q 006834 550 GVFSI-------YQDRCDITNILLEMDRILRPEGTVIF-RDTVEMLVKIRSITEGM 597 (629)
Q Consensus 550 ~~fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~l 597 (629)
.|.. .+.|=--+.+|.++-|+|+|||.+.| ||..+....+.+.+...
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 4541 12232336699999999999999998 57777777777777664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.005 Score=65.05 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=74.9
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc---cc-eeccccccCCCCC--cccceeeccccc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL---IG-TYQDWCEAFSTYP--RTYDLIHASGVF 552 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl---i~-~~~~~~e~f~~yp--~t~Dl~H~~~~f 552 (629)
.-+||||+|||.|-+|-|.++.+. --|+.+|..+-.++++.|--. +. ..+.=+-.....| +.||+|-|+=|
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-
Confidence 456899999999999988888765 335566665556666665322 12 1111111223344 58999887110
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e 607 (629)
. --+..+.-++-|.|||||++|++--. +..+.+...+.+-.|++.-+...
T Consensus 239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred H-----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 0 01123445667999999999998543 23567777777777777654443
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0014 Score=70.17 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=70.9
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCC---cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYP---RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp---~t~Dl~H 547 (629)
+.++. .|||.+||+|++...++..+. ++..+|....++..+.+. |+-. ++-.+..+...| .+||+|-
T Consensus 180 ~~~g~--~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv 253 (329)
T TIGR01177 180 VTEGD--RVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIA 253 (329)
T ss_pred CCCcC--EEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEE
Confidence 44554 599999999999766554433 455667665666543332 4422 111123333333 6899998
Q ss_pred ccccccc---cCC---CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCC
Q 006834 548 ASGVFSI---YQD---RCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRW 599 (629)
Q Consensus 548 ~~~~fs~---~~~---~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w 599 (629)
++-=|.. ... ......+|.|+-|+|+|||++++--+.+ ..++++++.--|
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 8643332 111 1235779999999999999998764432 144556666666
|
This family is found exclusively in the Archaea. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0057 Score=61.91 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=70.0
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC-C-----CCCCCCeeEEEe
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR-L-----PYPARAFDMAHC 292 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~-L-----p~pd~sFDlV~~ 292 (629)
+.||||.=||.-+..++..-+..-.++.+|++++..+.+.+- +. .+.+.++.+.. | ....++||+++.
T Consensus 76 ~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv 155 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFV 155 (237)
T ss_pred eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEE
Confidence 899999999987777777654444566779999998888642 32 35666655422 2 135789999984
Q ss_pred cCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 293 SGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 293 s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.||..+-..+..++.++||+||.+++.
T Consensus 156 ----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 156 ----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 456545557899999999999999996
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00033 Score=62.60 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=61.2
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.|||+|||.|.|..++.+.. ..++..+|-.+..+..+..+ |+ +.+++ |+-+....++ ..||+|=++--|
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 59999999999999998775 34566666553344433321 11 23333 2222222344 889999888777
Q ss_pred cccC-----CCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 553 SIYQ-----DRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 553 s~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.... .+-....++.++.|+|||||.+++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 6431 1123467899999999999999874
|
... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0079 Score=65.79 Aligned_cols=95 Identities=8% Similarity=0.052 Sum_probs=72.4
Q ss_pred CeEEEeCCCCchHHHHHHHc--CCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCCCCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKR--DILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPARAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~--g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd~sFDlV~~s~~ 295 (629)
.+|||+.||+|..+..++.+ ++. .++++|+++.+++.++++ +. ++.+...|+..+- ...+.||+|..-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~--~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVR--EVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 37999999999999999987 443 567789999999999865 22 3566666665442 2235799998643
Q ss_pred ccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+ . .+..++..+.+.+++||++.++..
T Consensus 123 f---G-s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 F---G-TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---C-CcHHHHHHHHHhcccCCEEEEEec
Confidence 2 2 456899999999999999999853
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0097 Score=63.89 Aligned_cols=92 Identities=17% Similarity=0.114 Sum_probs=64.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
.+.++||+||++|.|+..|+++|..+ +++|..+ +-.. ......+.....+..+..-+.+.+|+++|-.+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V---~AVD~g~-l~~~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----- 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFV---TAVDNGP-MAQS-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----- 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEE---EEEechh-cCHh-hhCCCCEEEEeccCcccCCCCCCCCEEEEeccc-----
Confidence 35599999999999999999998754 5559554 2222 223445777776665553236789999995543
Q ss_pred CHHHHHHHHHhcccCC--cEEEEE
Q 006834 302 YDGLYLLEVDRVLRPG--GYWILS 323 (629)
Q Consensus 302 d~~~~L~el~RvLKPG--G~liis 323 (629)
.|...+.-+.+.|..| ..+|+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEE
Confidence 6778888888888766 345554
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0026 Score=67.30 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=44.8
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG 267 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg 267 (629)
+.+.+.+.+...++. .+||.+||.|.++..+++.......++++|.++++++.|+++-
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 355666666555444 8999999999999999998532235677799999999998763
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00016 Score=68.74 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=50.6
Q ss_pred CeEEEEecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCCCCcc
Q 006834 269 PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWK 330 (629)
Q Consensus 269 ~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~ 330 (629)
.+.++.-.....+|.++|.|+|.|.++++|+..+ ...++++++|+|||||+|-+++|..++.
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 3444444456678999999999999999999855 3469999999999999999999977643
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.018 Score=59.75 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=79.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc------CCCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER------GVPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er------g~~~~~~v~d~~~Lp~ 282 (629)
+..|..+|...+|. +|||-|.|+|+++.++++.-...-.+...|+++.-.+.|++. +.++.+.+-|.....|
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 66788888888887 999999999999999988632222445559999988888864 3467888888776655
Q ss_pred C--CCCeeEEEecCcccccccCHHHHHHHHHhcccCCc-EEEEEeC
Q 006834 283 P--ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGG-YWILSGP 325 (629)
Q Consensus 283 p--d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG-~liis~P 325 (629)
. +..+|.|+. .++ .|-.++--+..+||-+| +|+-..|
T Consensus 172 ~~ks~~aDaVFL-----DlP-aPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 172 LIKSLKADAVFL-----DLP-APWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred cccccccceEEE-----cCC-ChhhhhhhhHHHhhhcCceEEeccH
Confidence 4 678999985 233 45556777777999877 5544433
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0023 Score=71.05 Aligned_cols=99 Identities=24% Similarity=0.330 Sum_probs=58.0
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cccceecccc-ccC--CC--CCcccceeecc-
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWC-EAF--ST--YPRTYDLIHAS- 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~-e~f--~~--yp~t~Dl~H~~- 549 (629)
.+|||||||.||++.+|++. + --.|+.+|.+...+..+.++ |+--.+.--+ ..+ .. -+.+||.|-++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46999999999999988764 2 11344445555566554333 5410110011 121 11 13789998864
Q ss_pred -----ccccccCC------CcC-------HHHHHHHHhhcccCCcEEEEE
Q 006834 550 -----GVFSIYQD------RCD-------ITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 550 -----~~fs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~ 581 (629)
|++..... .-+ ...+|.++-|+|||||.++++
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 33331110 000 235899999999999999997
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0045 Score=63.55 Aligned_cols=103 Identities=14% Similarity=0.255 Sum_probs=70.0
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC---cccceee-ccccccccCC
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP---RTYDLIH-ASGVFSIYQD 557 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp---~t~Dl~H-~~~~fs~~~~ 557 (629)
.|-|||||-+-.|. =...+|..|-+++++.. +. -| .+...| +|.|++- |-.|.
T Consensus 183 vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~--------------V~--~c-Dm~~vPl~d~svDvaV~CLSLM----- 239 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS-SERHKVHSFDLVAVNER--------------VI--AC-DMRNVPLEDESVDVAVFCLSLM----- 239 (325)
T ss_pred EEEecccchhhhhh-ccccceeeeeeecCCCc--------------ee--ec-cccCCcCccCcccEEEeeHhhh-----
Confidence 58999999886654 23448999999998765 11 12 122244 8999854 32222
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCCeEEEeecC
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRDTVE---MLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~l~w~~~~~~~e 607 (629)
.-++-+++.|..|||+|||.++|.+-.. .+....+-+..|..++...|.+
T Consensus 240 gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 240 GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 2468899999999999999999975443 2334555577888887765554
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0078 Score=63.33 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=60.9
Q ss_pred CCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc-----cceec-cccccCCCCCcccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL-----IGTYQ-DWCEAFSTYPRTYD 544 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl-----i~~~~-~~~e~f~~yp~t~D 544 (629)
..-++|||+|||.|+.++.+.++ ++- +|+-++..+..+.++.+. |+ +.+++ |--+-+..-+.+||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 44678999999999999999887 553 444444444577776553 11 11222 11111122347899
Q ss_pred eeeccccccccCC--CcCHHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQD--RCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~--~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+|=++. +.-+.. .---+.++.++-|+|+|||.+++.
T Consensus 153 vIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986642 211110 001256778899999999999985
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0091 Score=62.28 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=61.1
Q ss_pred CCCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh-----c-c----cceec-cccccCCCCCcccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER-----G-L----IGTYQ-DWCEAFSTYPRTYD 544 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er-----g-l----i~~~~-~~~e~f~~yp~t~D 544 (629)
..+-++||++|||.|+++..+.+.+ + .+++-++..++.+..+.+. | + +.+.+ |--+-....+++||
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 3345589999999999999888764 3 3444444444566655542 1 0 11111 11111122368999
Q ss_pred eeeccccccccCC-CcCHHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQD-RCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+|=++........ .--...++..+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9866543221111 111356788899999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.012 Score=65.58 Aligned_cols=110 Identities=20% Similarity=0.195 Sum_probs=75.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
..+++...+.+...++. ++||+=||.|.|+..|+++... +.|+|+++++++.|+++ + .++.|..++++++
T Consensus 279 ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~---V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 279 EKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKK---VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCE---EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence 33344555555554444 8999999999999999987654 45669999999999864 3 3588888887776
Q ss_pred CCC---CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYP---ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~p---d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
... ...||.|+...---.. ...+++.+.+ ++|-..++++-
T Consensus 354 ~~~~~~~~~~d~VvvDPPR~G~---~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPRAGA---DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred hhhccccCCCCEEEECCCCCCC---CHHHHHHHHh-cCCCcEEEEeC
Confidence 522 3588999964422111 2345555554 57788888884
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.014 Score=63.41 Aligned_cols=146 Identities=13% Similarity=0.074 Sum_probs=79.1
Q ss_pred CCCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh--------c-c----cceec-cccccCCCCCc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER--------G-L----IGTYQ-DWCEAFSTYPR 541 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er--------g-l----i~~~~-~~~e~f~~yp~ 541 (629)
-..-++||++|+|.|+.++.+.+.+ + .+|+-+|..+..++++.+. | + +-+.+ |--+-+..-++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v--~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETV--LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCC--CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 3445789999999999999888764 4 3444455555688887751 1 1 11111 11111222346
Q ss_pred ccceeecccccccc--CCCcCHHHHHHHHhhcccCCcEEEEEeCH-----HHHHHHHHHHhcCCCeEEEeecCCCCC-CC
Q 006834 542 TYDLIHASGVFSIY--QDRCDITNILLEMDRILRPEGTVIFRDTV-----EMLVKIRSITEGMRWKSQIMDHESGPF-NP 613 (629)
Q Consensus 542 t~Dl~H~~~~fs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~~~~~e~~~~-~~ 613 (629)
.||+|=++--.... ..+---..++..+.|.|+|||.++..... .....+.+.++..-..+..+.+---.. ..
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 89998876211111 11111245888999999999999886431 222223344343333333222211111 12
Q ss_pred ceEEEEEeccc
Q 006834 614 EKILFAAKTYW 624 (629)
Q Consensus 614 e~~l~~~K~~w 624 (629)
-.+++|.|...
T Consensus 306 WgF~~as~~~~ 316 (374)
T PRK01581 306 WGFHIAANSAY 316 (374)
T ss_pred eEEEEEeCCcc
Confidence 56777776544
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.013 Score=60.78 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=74.9
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRLP 281 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~Lp 281 (629)
....++.|.+.+....+. .|||+|+|.|.++..|++.+. .++.+|.++.+++..+++ ..++.+...|...+.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence 466788888888765444 899999999999999999984 455669999999999885 357888999988887
Q ss_pred CCC---CCeeEEEecCcccccccCHHHHHHHHHhcccC
Q 006834 282 YPA---RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRP 316 (629)
Q Consensus 282 ~pd---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKP 316 (629)
.+. +....|+++..+ + -...++..+...-+.
T Consensus 90 ~~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 554 456677776533 2 234566666653333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0058 Score=63.55 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=60.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCCcccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYPRTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp~t~D 544 (629)
+.++. +||||+||.|+++.+|++. + .|+.+|.+...+..+.++ |+ +-+++.=...+......||
T Consensus 69 ~~~g~--~VLDl~ag~G~kt~~la~~~~~~g----~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPE--RVLDMAAAPGGKTTQISALMKNEG----AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcC--EEEEECCCchHHHHHHHHHcCCCC----EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCC
Confidence 34554 4999999999999887653 2 245556665666555432 44 2333311112222225699
Q ss_pred eeeccccccccC------------CCcC-------HHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQ------------DRCD-------ITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~------------~~c~-------~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.|-++-=.|... ..-+ ...+|.++-++|||||+++++
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 987644333210 0001 124888999999999999996
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0061 Score=61.24 Aligned_cols=109 Identities=17% Similarity=0.058 Sum_probs=58.2
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHc-----------C---CCeEE
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALER-----------G---VPAMI 272 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~er-----------g---~~~~~ 272 (629)
....+.+.+...+++ ..+|+|||.|......+- .++. ...|+++.+...+.|.+. + .++.+
T Consensus 30 ~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~--~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 30 FVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCK--KSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--S--EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCc--EEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 344555666655544 899999999988766553 3443 245669998887776531 2 23445
Q ss_pred EEecCCCCCCCC---CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEE
Q 006834 273 GVISSKRLPYPA---RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 273 ~v~d~~~Lp~pd---~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~lii 322 (629)
..+|....++.. ..-|+|+++... +.++....|.++..-||+|-+++-
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 555543322111 346999997654 232344567778888988877654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0048 Score=68.57 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=67.4
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCC-cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYP-RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp-~t~Dl~H 547 (629)
+.++. .|||+|||.|+.+.+|++..- -..|+..|.++.++..+.++ |+ +.+.+ |..+....++ .+||.|=
T Consensus 242 ~~~g~--~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 242 PQNGE--RVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCC--EEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 34443 599999999999999876520 02355556665666655433 33 22222 3222111133 6899987
Q ss_pred ccccccccC------------CC-------cCHHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhc
Q 006834 548 ASGVFSIYQ------------DR-------CDITNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEG 596 (629)
Q Consensus 548 ~~~~fs~~~------------~~-------c~~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~ 596 (629)
++.=+|... .. .....+|.++-++|||||.++++. ..+....++..+++
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 544333110 00 112358889999999999999863 23333444444443
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0053 Score=68.56 Aligned_cols=114 Identities=24% Similarity=0.298 Sum_probs=65.1
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeeccc-
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASG- 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~- 550 (629)
.+|||||||.|+++.+|++. +- ..|+.+|.+++.+..+.+ .|+ |-+.+ |..+....++++||+|=++.
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 46999999999999888764 11 134445555456655543 244 33333 33222223458899976543
Q ss_pred -----ccccc------CCCcCH-------HHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhc
Q 006834 551 -----VFSIY------QDRCDI-------TNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEG 596 (629)
Q Consensus 551 -----~fs~~------~~~c~~-------~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~ 596 (629)
++... ....++ ..+|.++-|+|||||.+|++- ..+....++.+++.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 22210 011111 347889999999999999751 11233345555554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0049 Score=68.64 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=67.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCC-Cccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTY-PRTY 543 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~y-p~t~ 543 (629)
+.++. +||||+||.||.+.+|++. +- .|+..|.++..+..+.++ |+ +-+.+ |.. .+..+ +.+|
T Consensus 235 ~~~g~--~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGL--RVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTF 308 (431)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccC
Confidence 44554 5999999999998887753 21 355556666777666544 44 22322 322 22222 3789
Q ss_pred ceeeccccccccCC---Cc----------------CHHHHHHHHhhcccCCcEEEEE----eCHHHHHHHHHHHh
Q 006834 544 DLIHASGVFSIYQD---RC----------------DITNILLEMDRILRPEGTVIFR----DTVEMLVKIRSITE 595 (629)
Q Consensus 544 Dl~H~~~~fs~~~~---~c----------------~~~~~l~e~dRiLrPgG~~i~~----d~~~~~~~~~~~~~ 595 (629)
|.|=++.--|.... += .-..+|.+.-+.|||||.++++ .+.+....|+.+++
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 99876433332111 00 1134788999999999999996 23333444455544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0062 Score=68.05 Aligned_cols=111 Identities=21% Similarity=0.330 Sum_probs=63.4
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCC-C-cccceeecc-
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTY-P-RTYDLIHAS- 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~y-p-~t~Dl~H~~- 549 (629)
..|||+|||.|+++.+|++. +- -.|+.+|.+..++..+.+ .|+ |-+. +.....+ | .+||.|=++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~---~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGITIIETI---EGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCCCeEEEE---eCcccccccCCCCCEEEEcC
Confidence 35999999999988777642 11 134555666566655543 354 2222 2222222 3 689987643
Q ss_pred -----cccccc-----C-CCcCH-------HHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhc
Q 006834 550 -----GVFSIY-----Q-DRCDI-------TNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEG 596 (629)
Q Consensus 550 -----~~fs~~-----~-~~c~~-------~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~ 596 (629)
|+|... . ...++ ..+|.++-|+|||||.+++.. +.+.-..|+.++++
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 233211 0 01111 248999999999999999973 22333445555543
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.044 Score=59.60 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=77.2
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-EeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--CC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-TMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP--YP 283 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp--~p 283 (629)
....+...++. +|||+.++.|.=+..|++.... ...++++|.++.-++..+++ |. ++.....|...++ .+
T Consensus 148 ~a~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 148 PALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 34455555665 9999999999989999887543 22347779999888777654 43 3466666766554 22
Q ss_pred C-CCeeEEEe------cCcccccccC----------------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 284 A-RAFDMAHC------SGCLIPWYMY----------------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 284 d-~sFDlV~~------s~~L~h~~~d----------------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
. +.||.|+. ..++ +-.++ +..+|....++|||||.|+.++-...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~i-rr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVI-RRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred ccCcCcEEEECCCCCCCccc-ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 2 35999995 2222 11111 12589999999999999999975443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=59.29 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=95.2
Q ss_pred HHHHHHHHhhcCccC--CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHH---HHH----HcCC--------
Q 006834 206 DAYIDNINELIPLTG--GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQ---FAL----ERGV-------- 268 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~--g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~---~A~----erg~-------- 268 (629)
...++.|..+.+... ....+||--|||.|+++..|+..|... -|-+.|.-|+= ++. ..+.
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~---qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKC---QGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccc---cccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 456788888776532 234479999999999999999998743 34467666542 222 1110
Q ss_pred -------------CeE---------------E--EEecCCCC---CCCCCCeeEEEecCcccccccCHHHHHHHHHhccc
Q 006834 269 -------------PAM---------------I--GVISSKRL---PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLR 315 (629)
Q Consensus 269 -------------~~~---------------~--~v~d~~~L---p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK 315 (629)
++. | ..+|..+. +-..++||+|+..+.+ .-..+.-.+|..+..+||
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-echHHHHHHHHHHHHhcc
Confidence 000 0 00111110 1112469999976544 444456789999999999
Q ss_pred CCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeeccc
Q 006834 316 PGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEK 365 (629)
Q Consensus 316 PGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 365 (629)
|||+++=.+|-...-....+- .....++...+.+..+++.++|+.+.+.
T Consensus 288 ~GGvWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 288 PGGVWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcEEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEee
Confidence 999999998855432222211 1222344456678888999999887665
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.017 Score=50.44 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=56.8
Q ss_pred EEeecccchh--HHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc------cceec-cccccCCCCC--cccceeecccc
Q 006834 483 VMDMNAYLGG--FAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL------IGTYQ-DWCEAFSTYP--RTYDLIHASGV 551 (629)
Q Consensus 483 vlD~~~g~Gg--faa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl------i~~~~-~~~e~f~~yp--~t~Dl~H~~~~ 551 (629)
++|+|||.|. +.+.+...+..+.. ++....++.....+.. +..+. +.......++ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 55555554433333 4444345555333321 12222 2222223333 389998 6333
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
...+.. ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 332222 688999999999999999998654
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.039 Score=60.11 Aligned_cols=118 Identities=11% Similarity=0.042 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEe-------------------------------------
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTM------------------------------------- 248 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v------------------------------------- 248 (629)
..+...|..+..-.++ ..++|--||+|++..+.+..+....
T Consensus 177 etLAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 177 ETLAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred HHHHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 3334445544444444 3799999999999998887653110
Q ss_pred -EEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCH---H----HHHHHHHhcc
Q 006834 249 -SFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYD---G----LYLLEVDRVL 314 (629)
Q Consensus 249 -~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~---~----~~L~el~RvL 314 (629)
-++|.|+++.+++.|+.+ |+ .+.|.++|...++-+-+.+|+|+|+.-.---..+. . .+...+.+.+
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence 266889999999999865 43 48899999988875447999999987441111111 1 3556777888
Q ss_pred cCCcEEEEEeC
Q 006834 315 RPGGYWILSGP 325 (629)
Q Consensus 315 KPGG~liis~P 325 (629)
+--+.++++++
T Consensus 335 ~~ws~~v~tt~ 345 (381)
T COG0116 335 AGWSRYVFTTS 345 (381)
T ss_pred cCCceEEEEcc
Confidence 88888888854
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0034 Score=64.03 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=65.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-------c--cceeccccccCCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-------L--IGTYQDWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-------l--i~~~~~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
.+|||+|||+|+|...|++.++ -.|..+|...+++.--+.+. . |. +-+|-+-...++ ++|+.=
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~~-~~Dvsf---- 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIR-YVTPADIFPDFA-TFDVSF---- 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCce-eeeEEE----
Confidence 4699999999999999998864 34556666645665422221 1 11 113333221121 445432
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEE-------------------eCH---HHHHHHHHHHhcCCCeEE
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFR-------------------DTV---EMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~~---~~~~~~~~~~~~l~w~~~ 602 (629)
+.+..+|-.|.+.|+| |.+|+- |.. .++.++...+..+.|.+.
T Consensus 149 -------iS~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 149 -------ISLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred -------eehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 2345688999999999 887762 322 346666666777888765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.003 Score=65.09 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=68.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-----cc----eeccccccCCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-----IG----TYQDWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-----i~----~~~~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
++|||+|||.|-....|+..+ -+|+.+|....++.++-+.-= .+ .+---|+.....-..||.|-|.-+
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred ceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 569999999999999999887 478888988888888887621 11 010111222222233998777444
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
.. +--+.+.++.-+=+.|+|||.++|++-.
T Consensus 168 le---HV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 168 LE---HVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HH---HHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 33 3345688999999999999999998643
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.043 Score=55.56 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=66.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCCC-eEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGVP-AMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~~-~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
..+++|||+|.|.-+.-|+=..+.. .++-+|....-+.+.++ -+.+ +.+....++.+.-....||+|++-.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~-~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDL-KVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCC-cEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence 4599999999999888887443332 46777888766666553 3544 888887777665321119999985433
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
....++.-+...||+||.+++.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhh
Confidence 4456777788899999987653
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0091 Score=60.92 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=75.1
Q ss_pred eEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcc--cceec-cccccCCCCC--cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGL--IGTYQ-DWCEAFSTYP--RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergl--i~~~~-~~~e~f~~yp--~t~Dl~H~~~~ 551 (629)
..+|++|||.|.|=.+|+.+ +++-+=+-..--. .-+..+-+.|| +.++. |--+-+..++ .+.|-|+. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~-~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVA-KALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHH-HHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 46999999999999999876 3333333332222 45667778888 55554 3234455555 49998876 4
Q ss_pred ccc-------cCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHH-HHHHHhc
Q 006834 552 FSI-------YQDRCDITNILLEMDRILRPEGTVIF-RDTVEMLVK-IRSITEG 596 (629)
Q Consensus 552 fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~-~~~~~~~ 596 (629)
|.. .+.|=--+..|.++.|+|+|||.+.+ ||..+.... ++.....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 651 23444446799999999999999999 566665555 5555444
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0061 Score=65.37 Aligned_cols=96 Identities=21% Similarity=0.161 Sum_probs=55.4
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcccceeccccccCCC-CC--cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGLIGTYQDWCEAFST-YP--RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgli~~~~~~~e~f~~-yp--~t~Dl~H 547 (629)
+.++. +|||+|||+|.+++.|++.---.-.|+.+|..+.++..+.+ .|+ ..++..++.... .+ ..||+|.
T Consensus 78 i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii 154 (322)
T PRK13943 78 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIF 154 (322)
T ss_pred CCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEE
Confidence 44443 59999999999999987631000013334444456655544 354 111212222221 11 5799988
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+. ...+.+...+-|.|+|||.+++-.
T Consensus 155 ~~---------~g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 155 VT---------VGVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EC---------CchHHhHHHHHHhcCCCCEEEEEe
Confidence 73 233445556778999999998854
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.028 Score=56.47 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC----CeEEEEecCCC-C
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV----PAMIGVISSKR-L 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~----~~~~~v~d~~~-L 280 (629)
..+.+.+++.+..+ +++||.||-|-|.....+.++.+.-. +-++.++..++..++.+. ++.+..+--+. +
T Consensus 88 tpiMha~A~ai~tk---ggrvLnVGFGMgIidT~iQe~~p~~H--~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 88 TPIMHALAEAISTK---GGRVLNVGFGMGIIDTFIQEAPPDEH--WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred hHHHHHHHHHHhhC---CceEEEeccchHHHHHHHhhcCCcce--EEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence 45566666666543 45899999999999888888866432 346999999999987652 34444333222 2
Q ss_pred -CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 281 -PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 281 -p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.++++.||-|+---.-+++. +...+.+.+.|+|||+|.|-+.
T Consensus 163 ~~L~d~~FDGI~yDTy~e~yE-dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELYE-DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ccccccCcceeEeechhhHHH-HHHHHHHHHhhhcCCCceEEEe
Confidence 26788999999633323433 6677889999999999998665
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.011 Score=65.94 Aligned_cols=118 Identities=17% Similarity=0.244 Sum_probs=67.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCC-------Cc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTY-------PR 541 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~y-------p~ 541 (629)
+.+|. .|||||||.||++.+|++. +- -.|+..|.+...+..+.++ |+ ..+.-.|.....+ +.
T Consensus 250 ~~~g~--~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 250 PQPGE--VILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred CCCcC--EEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccc
Confidence 34444 5999999999999888764 10 1244455555566555432 33 1112122222222 36
Q ss_pred ccceeecc------ccccccCC------CcC-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhcC
Q 006834 542 TYDLIHAS------GVFSIYQD------RCD-------ITNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEGM 597 (629)
Q Consensus 542 t~Dl~H~~------~~fs~~~~------~c~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~l 597 (629)
+||.|=++ |++....+ ..+ ...+|.++-|+|||||.++++. +.+....|+.+++..
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 89987643 23221100 011 2468999999999999999763 234455566665553
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0061 Score=58.49 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=48.2
Q ss_pred CCCCCCchHHHHhhcc---------cceeccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 510 FHSNPDTLGAIYERGL---------IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 510 ~~~~~~~l~~~~ergl---------i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+|-+++||.++.+|-- |..++.=++.++.-+.+||+|=+..++... .+...+|.|+.|+|||||.++|
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEEE
Confidence 4556688888765421 334443344554223799998775444433 3568899999999999999998
Q ss_pred EeCH
Q 006834 581 RDTV 584 (629)
Q Consensus 581 ~d~~ 584 (629)
.|-.
T Consensus 80 ~d~~ 83 (160)
T PLN02232 80 LDFN 83 (160)
T ss_pred EECC
Confidence 7643
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.032 Score=59.07 Aligned_cols=136 Identities=11% Similarity=0.123 Sum_probs=77.2
Q ss_pred CeeEEEeecccchhHHhhhhC----CCeEEEEecCCCCCCCchHHHHh-----hcc---ccee-ccccccCCCCC--ccc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSK----YPVWVMNVVPFHSNPDTLGAIYE-----RGL---IGTY-QDWCEAFSTYP--RTY 543 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~----~~v~~mnv~~~~~~~~~l~~~~e-----rgl---i~~~-~~~~e~f~~yp--~t~ 543 (629)
.-+.|+|+|||-|++.+.+.. .+..+.| +|..+..++.+.+ .|| +... +|..+ ..+ ..|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~g---iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~---~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHN---FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD---VTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEE---EeCCHHHHHHHHHHhhhccCccCCcEEEECchhh---cccccCCc
Confidence 557799999998877554432 1222333 3444344443332 344 2222 12222 232 689
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH---HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEE
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV---EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAA 620 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~ 620 (629)
|+|=+..+ .+.+.-+.+.+|..+-|.|||||.++++--. ..+...-....-=.|+...+-|-.++ +-.-++|++
T Consensus 197 DlVF~~AL--i~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r 273 (296)
T PLN03075 197 DVVFLAAL--VGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIAR 273 (296)
T ss_pred CEEEEecc--cccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEE
Confidence 99887511 1223346688999999999999999998421 11111111111117887765555444 567889999
Q ss_pred ecc
Q 006834 621 KTY 623 (629)
Q Consensus 621 K~~ 623 (629)
|.-
T Consensus 274 ~~~ 276 (296)
T PLN03075 274 KPG 276 (296)
T ss_pred eec
Confidence 964
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.011 Score=63.11 Aligned_cols=95 Identities=12% Similarity=0.169 Sum_probs=60.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-c-----c-eeccc-cccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-I-----G-TYQDW-CEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i-----~-~~~~~-~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||+|.++..|.+++. +|+.+|.+++++..+.+|.- . + ..-.+ +..+...+.+||+|=|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 3699999999999999998864 67777888889988887731 0 0 00111 12334456899998776666
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
-.+... ....++..+.++ .+||. ||+
T Consensus 223 ~H~p~~-~~~~ll~~l~~l-~~g~l-iIs 248 (315)
T PLN02585 223 IHYPQD-KADGMIAHLASL-AEKRL-IIS 248 (315)
T ss_pred EecCHH-HHHHHHHHHHhh-cCCEE-EEE
Confidence 443321 234456666654 45555 444
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.052 Score=54.45 Aligned_cols=115 Identities=16% Similarity=0.034 Sum_probs=70.4
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC-
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP- 281 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp- 281 (629)
.++..-+.+|.+...... .+..|+|+|+-.|+|+..+++.......|+++|+.+-- --..+.+.++|...-+
T Consensus 27 SRAa~KL~el~~k~~i~~-~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~ 99 (205)
T COG0293 27 SRAAYKLLELNEKFKLFK-PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDT 99 (205)
T ss_pred chHHHHHHHHHHhcCeec-CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccH
Confidence 344445556655554322 23489999999999999999875443235666875421 1134777777764432
Q ss_pred -------CCCCCeeEEEecCcc---cccccCH-------HHHHHHHHhcccCCcEEEEEe
Q 006834 282 -------YPARAFDMAHCSGCL---IPWYMYD-------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 -------~pd~sFDlV~~s~~L---~h~~~d~-------~~~L~el~RvLKPGG~liis~ 324 (629)
+....+|+|+|-..- -++..|. ..++.-...+|+|||.|++-.
T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 334457999972221 1121121 235666778999999999974
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.039 Score=54.52 Aligned_cols=139 Identities=19% Similarity=0.292 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccch--hHHhhhhCCCeEEEEecCCCCCCCch-HHHHhhcc--ccee
Q 006834 455 REDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLG--GFAAAMSKYPVWVMNVVPFHSNPDTL-GAIYERGL--IGTY 529 (629)
Q Consensus 455 ~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~G--gfaa~l~~~~v~~mnv~~~~~~~~~l-~~~~ergl--i~~~ 529 (629)
.+..+.|.+|+-.-..+++.+..... +++|+|+|-| |.--++.....-+.=|-+..-..+.| .++.+=|| +-++
T Consensus 25 ~~~~~~~~~Hi~DSL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 25 RDPEEIWERHILDSLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp -SHHHHHHHHHHHHHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CCHHHHHHHHHHHHHHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 44568899999777766665555443 5999999966 22233333333212122221112223 34455566 4466
Q ss_pred ccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCeEE
Q 006834 530 QDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR---DTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 530 ~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~l~w~~~ 602 (629)
|.-.|. ..++..||++=| .+-..+..++.-+-+.|+|||.+++- +..+.+...++..+.+.++..
T Consensus 104 ~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred Eeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 655555 458899999887 34467787887789999999999985 444566777777777777765
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0079 Score=61.32 Aligned_cols=98 Identities=16% Similarity=0.260 Sum_probs=68.5
Q ss_pred EEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcc------cceeccccccCCCCC---cccceeec
Q 006834 482 NVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGL------IGTYQDWCEAFSTYP---RTYDLIHA 548 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergl------i~~~~~~~e~f~~yp---~t~Dl~H~ 548 (629)
++|.+|||.|.---=|++. ++.++ .-|=+++-+.+.-++-- -..++|.++.=...| .++|++-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~---acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVY---ACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEE---EcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 7999999999876666543 23333 23333455555555443 346667775434444 89999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.-+||.-.. -.+...|-.+.|+|+|||.+++||=
T Consensus 151 IFvLSAi~p-ek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 151 IFVLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEEeccCh-HHHHHHHHHHHHHhCCCcEEEEeec
Confidence 888886543 3577899999999999999999974
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.018 Score=62.54 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~ 278 (629)
..+++.+.+++...+ .+|||+-||+|.|+..|++..-. +.|+|+++++++.|+++ + .++.|..+++.
T Consensus 183 ~~l~~~~~~~l~~~~---~~vlDlycG~G~fsl~la~~~~~---V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 183 EKLYEQALEWLDLSK---GDVLDLYCGVGTFSLPLAKKAKK---VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHHHCTT-T---TEEEEES-TTTCCHHHHHCCSSE---EEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred HHHHHHHHHHhhcCC---CcEEEEeecCCHHHHHHHhhCCe---EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 333555555555432 27999999999999999998764 45669999999999864 3 35788776543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.017 Score=64.76 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=64.5
Q ss_pred CcchhhchhhHHHHH---HHHHHHHHhhcccCCCC----eeEEEeecccchhHHhhh----h----CCCeEEEEecCCCC
Q 006834 448 GITAEKLREDNELWK---DRMTYYKKIDGLFHKGR----YRNVMDMNAYLGGFAAAM----S----KYPVWVMNVVPFHS 512 (629)
Q Consensus 448 ~~~~~~f~~d~~~w~---~~v~~y~~~~~~~~~~~----~R~vlD~~~g~Ggfaa~l----~----~~~v~~mnv~~~~~ 512 (629)
..+.|.|+.|.-+.. +-+. +.+...+...+ -.+|||+|||.|....+- + ...|++ ++.
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~--~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyA-----VEk 222 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIE--EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYA-----VEK 222 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHH--HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEE-----EES
T ss_pred cccHhhHhcCHHHHHHHHHHHH--HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEE-----EcC
Confidence 347899999985444 3332 22222233332 246999999999885221 1 123333 232
Q ss_pred CCC---chH-HHHhhcc---cceeccccccCCCC--CcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 513 NPD---TLG-AIYERGL---IGTYQDWCEAFSTY--PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 513 ~~~---~l~-~~~ergl---i~~~~~~~e~f~~y--p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
.++ +++ .+.+.|+ |.++| +..... |.-.|+|=+ -++......-.++.+|.-.||.|+|||.+|=
T Consensus 223 n~~A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVS-ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 223 NPNAVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVS-ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp STHHHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred CHhHHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEE-eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 212 232 2244444 66666 333332 478998765 2333223334778899999999999998763
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.065 Score=57.21 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=59.0
Q ss_pred CCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCC-cccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYP-RTYD 544 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp-~t~D 544 (629)
..-++|||+|+|.|+.++.+++.+ |.-+-++..|. ..+.++.+. |+ +.+++ |--+-....| +.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 346789999999999999998874 53333444443 355554432 22 12222 1001123343 7899
Q ss_pred eeeccccccccCCC-cCHHHHHHHHhhcccCCcEEEE
Q 006834 545 LIHASGVFSIYQDR-CDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 545 l~H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+|-++.-....... ---+.++..+-|.|+|||.++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 98775322111110 0124578899999999999987
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.022 Score=64.98 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=70.5
Q ss_pred CeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhhc-c------------cceec-cccccCCCCCccc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYERG-L------------IGTYQ-DWCEAFSTYPRTY 543 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~erg-l------------i~~~~-~~~e~f~~yp~t~ 543 (629)
+-++|||+|||.|+.+..+.+++ |- .|+-+|..+..++.+.+.- + +.+++ |--+-....++.|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~--~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVE--QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcC--eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999888764 32 3333444445888877631 1 11222 1101122356899
Q ss_pred ceeeccccccccCC---CcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCeE
Q 006834 544 DLIHASGVFSIYQD---RCDITNILLEMDRILRPEGTVIFRD-----TVEMLVKIRSITEGMRWKS 601 (629)
Q Consensus 544 Dl~H~~~~fs~~~~---~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~ 601 (629)
|+|-++--. .... +=--++++.++-|.|+|||.+++.. ..+....+.+.+++....+
T Consensus 375 DvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 375 DVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 998876221 1111 1011457788899999999999842 2344455555555554443
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.041 Score=51.67 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=70.3
Q ss_pred eEEEeecccchh-HHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccccCCCc
Q 006834 481 RNVMDMNAYLGG-FAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 481 R~vlD~~~g~Gg-faa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c 559 (629)
+.|+|+|||+|. +|..|.+.+. .|+.+|.++..++-+.++|+-.+..|+-+.=...=+.+|+|-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys----------- 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS----------- 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE-----------
Confidence 459999999996 9999999886 5566677767888899998866665544322111167888888
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecC
Q 006834 560 DITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e 607 (629)
||-+.+.+..+.++++++.=++.+.-..
T Consensus 84 --------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 --------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred --------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6677888899999999999998876544
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.02 Score=58.60 Aligned_cols=128 Identities=9% Similarity=0.161 Sum_probs=70.9
Q ss_pred CeeEEEeecccchhHHhhhh----CCCeEEEEecCCCCCCCchHHHH----hhcc---cceec-cccccCCC----C-Cc
Q 006834 479 RYRNVMDMNAYLGGFAAAMS----KYPVWVMNVVPFHSNPDTLGAIY----ERGL---IGTYQ-DWCEAFST----Y-PR 541 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~----~~~v~~mnv~~~~~~~~~l~~~~----ergl---i~~~~-~~~e~f~~----y-p~ 541 (629)
.-++|||+|||+|.-+.+|+ ..+ .|+-+|..+..+.++. +-|+ |.+.+ |..+.+.. . ..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g----~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDG----RITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCC----EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 35579999999986444333 222 1222333333444443 3354 33333 33333322 2 36
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe---------CH--------HHHHHHHHH----HhcCCCe
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD---------TV--------EMLVKIRSI----TEGMRWK 600 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~~--------~~~~~~~~~----~~~l~w~ 600 (629)
+||+|-+++- .-....++.++-|.|||||.+++.+ +. .....|+++ ...=+|+
T Consensus 144 ~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 144 EFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred CCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 8999877332 1234567888899999999998732 10 122344443 4444666
Q ss_pred EEEeecCCCCCCCceEEEEEec
Q 006834 601 SQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 601 ~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
+.+.-. .+.+++++|.
T Consensus 218 ~~~lp~------gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI------GDGVTLCRRL 233 (234)
T ss_pred EEEEEe------CCccEEEEEe
Confidence 666644 3568888875
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.018 Score=63.46 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=71.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc----cceec-cccccCCCC---Ccccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL----IGTYQ-DWCEAFSTY---PRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl----i~~~~-~~~e~f~~y---p~t~Dl~H~ 548 (629)
++|||++||+|+|+-+++..+- -.|+.+|.++..+..+.+ -|+ +-+++ |..+.+..+ .++||+|=+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4699999999999866544442 234445555556655433 143 11222 222222222 258999887
Q ss_pred cccc-cccC-----CCcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCCCeEEEee
Q 006834 549 SGVF-SIYQ-----DRCDITNILLEMDRILRPEGTVIFRDT------VEMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 549 ~~~f-s~~~-----~~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~~ 605 (629)
+-=+ +..+ ......+++.-.-++|+|||.+++... .+..+.+.+.+..-..+.++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6432 1111 113455677777899999999998422 3345566666666666666553
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.015 Score=60.96 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=64.1
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--cccceeeccccccccC-
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP--RTYDLIHASGVFSIYQ- 556 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~~~- 556 (629)
.+|||+|||.|.++..+.++ +- .+|+.+|.++.+++.+.++ +.. ..-.+..+..++ ++||+|=++-=|-...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 36999999999998888664 11 3566667776788877765 211 111234444444 7899988866654211
Q ss_pred ----C-----------Cc-CHHHHHHHHhhcccCCcEEEEE
Q 006834 557 ----D-----------RC-DITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 557 ----~-----------~c-~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
. .+ .+...+...-++|+|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 0 11 1467889999999999988874
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.018 Score=55.77 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=44.9
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCC--CCCCC-eeEEEecC
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLP--YPARA-FDMAHCSG 294 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp--~pd~s-FDlV~~s~ 294 (629)
+|||+.||.|..+..+++....++ ++|+++..++.|+.+ |+ ++.+..+|...+. +..+. ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Vi---aidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVI---AIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEE---EEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEE---EEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 799999999999999999976554 559999999999865 33 5888888865542 22222 89999855
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.079 Score=55.61 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=61.0
Q ss_pred CCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHc-------CCCeEEEEecCCCCCCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALER-------GVPAMIGVISSKRLPYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~er-------g~~~~~~v~d~~~Lp~pd~sFDlV~~s~ 294 (629)
+++|+=||||.=-++..+.. +......+.++|+++++++.+++- +....|..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 56999999997666655554 322234577889999999999742 3567888888776665556899999766
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....-..+...+|..+.+.++||..+++..
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 442222345789999999999999999863
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.15 Score=51.78 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=70.1
Q ss_pred hHHHHHHHHhhcC---ccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcH----HHHHHHHHcCCCeEEEEec
Q 006834 205 ADAYIDNINELIP---LTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHE----AQVQFALERGVPAMIGVIS 276 (629)
Q Consensus 205 a~~~i~~I~~lL~---~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~----~~i~~A~erg~~~~~~v~d 276 (629)
+..+...|..-+. ..++. +||-+|..+|.....++.- +..+ .+++++.|+ ..+..|++| .++.-...|
T Consensus 55 RSKLaAai~~Gl~~~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G-~VYaVEfs~r~~rdL~~la~~R-~NIiPIl~D 130 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGS--KVLYLGAASGTTVSHVSDIVGPDG-VVYAVEFSPRSMRDLLNLAKKR-PNIIPILED 130 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT---EEEEETTTTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHS-TTEEEEES-
T ss_pred hhHHHHHHHcCccccCCCCCC--EEEEecccCCCccchhhhccCCCC-cEEEEEecchhHHHHHHHhccC-Cceeeeecc
Confidence 4555555554443 34444 9999999999988888874 2222 357779998 556666666 345545556
Q ss_pred CCCCC-C--CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRLP-Y--PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~Lp-~--pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+..-. | --+..|+|++--. -+.+.+.++.++...||+||+++++.
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 54321 1 1348999997432 12124568888999999999999985
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.026 Score=60.82 Aligned_cols=129 Identities=20% Similarity=0.355 Sum_probs=68.7
Q ss_pred hHHHHHHHHH--HHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----------
Q 006834 457 DNELWKDRMT--YYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG---------- 524 (629)
Q Consensus 457 d~~~w~~~v~--~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg---------- 524 (629)
.-+.|-+.+- .|...+. ....-.+||||+||=||=---....+| -.++.+|-+...++-+.+|=
T Consensus 40 ~fNNwvKs~LI~~~~~~~~--~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~ 115 (331)
T PF03291_consen 40 NFNNWVKSVLIQKYAKKVK--QNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSK 115 (331)
T ss_dssp HHHHHHHHHHHHHHCHCCC--CTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred HHhHHHHHHHHHHHHHhhh--ccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence 3355776653 3433221 222456799999999985444444444 33444455545666666654
Q ss_pred -----ccceeccccccCCC-----CC---cccceeeccccccc---cCCCcCHHHHHHHHhhcccCCcEEEEE--eCHHH
Q 006834 525 -----LIGTYQDWCEAFST-----YP---RTYDLIHASGVFSI---YQDRCDITNILLEMDRILRPEGTVIFR--DTVEM 586 (629)
Q Consensus 525 -----li~~~~~~~e~f~~-----yp---~t~Dl~H~~~~fs~---~~~~c~~~~~l~e~dRiLrPgG~~i~~--d~~~~ 586 (629)
+....+ .+..|.. ++ +.||+|=| -|++ ..+.-....+|.-+-.-|||||+||.| |...+
T Consensus 116 ~~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVSc--QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 116 QYRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSC--QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TSEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEE--ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cccccchhhee-ccccccchhhhhccccCCCcceeeh--HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 222111 1122222 33 59999766 3332 223333456999999999999999998 44444
Q ss_pred HHHHHH
Q 006834 587 LVKIRS 592 (629)
Q Consensus 587 ~~~~~~ 592 (629)
+.++++
T Consensus 193 ~~~l~~ 198 (331)
T PF03291_consen 193 VKRLRE 198 (331)
T ss_dssp HCCHHC
T ss_pred HHHHHh
Confidence 445554
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.068 Score=56.31 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=74.9
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC-C-CCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL-P-YPA 284 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L-p-~pd 284 (629)
....+...++. +|||+.+|.|.=+..|++.....-.+++.|++..-+...+++ |. ++.....|.... + ...
T Consensus 77 ~~~~L~~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~ 154 (283)
T PF01189_consen 77 VALALDPQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE 154 (283)
T ss_dssp HHHHHTTTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT
T ss_pred ccccccccccc--cccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc
Confidence 33444444444 899999999999999988754233567789999988877654 43 344554565544 1 234
Q ss_pred CCeeEEEe----cCc--ccccc-------cC--------HHHHHHHHHhcc----cCCcEEEEEeCCC
Q 006834 285 RAFDMAHC----SGC--LIPWY-------MY--------DGLYLLEVDRVL----RPGGYWILSGPPI 327 (629)
Q Consensus 285 ~sFDlV~~----s~~--L~h~~-------~d--------~~~~L~el~RvL----KPGG~liis~P~~ 327 (629)
..||.|+. +.. +..-+ .. ...+|..+.+.| ||||+++.++-..
T Consensus 155 ~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 155 SKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp TTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 46999995 222 21111 00 125799999999 9999999997533
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.024 Score=54.65 Aligned_cols=93 Identities=9% Similarity=0.086 Sum_probs=55.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceeccccccCCCCC---cccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQDWCEAFSTYP---RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~~~~e~f~~yp---~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++..|+++. -.|+.+|.++.+++.+.++- -+.+++ +.+..++ ..||.|=++--|.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECCCcc
Confidence 469999999999999999873 34555666656777776552 133444 4444443 3578765533332
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
. ..-.+..++.+ .-+.++|.+++...
T Consensus 89 ~--~~~~i~~~l~~--~~~~~~~~l~~q~e 114 (169)
T smart00650 89 I--STPILFKLLEE--PPAFRDAVLMVQKE 114 (169)
T ss_pred c--HHHHHHHHHhc--CCCcceEEEEEEHH
Confidence 2 12223333322 22569999998743
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.041 Score=54.06 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=69.2
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchH----HHHhhcc---cceec-cccccCCCCCcccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLG----AIYERGL---IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~----~~~ergl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
+|||+|||-|.+=..|++.+.-- -++.+|=++..+. ++..+|+ |...+ |.-.. ...+.-||+||=-|-|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 79999999999999999876311 1445554433332 2334455 22221 22222 33456788888655553
Q ss_pred ---cc--CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCC
Q 006834 554 ---IY--QDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMR 598 (629)
Q Consensus 554 ---~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~ 598 (629)
+. .....+.-.+--++++|+|||.|+|+.-.-..++|.+......
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 21 1112223466678999999999999976655556666555444
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.033 Score=57.14 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=58.0
Q ss_pred EEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--cccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP--RTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~~ 555 (629)
.|||+|||+|.++.+++++ +. .+|..+|-.++.+..+.+. +.. .+-.+..+..++ .+||+|=++==|...
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar~n-~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGKRI-VPE-ATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHHhh-ccC-CEEEEcchhcccccCCccEEEECCCCCCc
Confidence 6999999999999988653 22 3566666665566666533 311 222224444443 689998776555421
Q ss_pred -----CC---CcCHHH-HHHHHhhcccCCcEEEE
Q 006834 556 -----QD---RCDITN-ILLEMDRILRPEGTVIF 580 (629)
Q Consensus 556 -----~~---~c~~~~-~l~e~dRiLrPgG~~i~ 580 (629)
.. ...+.. ++...-|+||||+. |+
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 12 223344 77777888888887 55
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.05 Score=51.06 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCCeEEEeCCCCchHHHHHHH-----cCCcEeEEEeecCcHHHHHHHHHc
Q 006834 222 NIRTAVDTGCGVASWGAYLLK-----RDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~-----~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
...+|+|+|||.|.++..|+. . ....+.++|.++..++.|.++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHH
Confidence 355899999999999999998 3 234567779999999988865
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.057 Score=54.55 Aligned_cols=127 Identities=14% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH-----hhcccceecccc-ccCCCCCcccceeecccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY-----ERGLIGTYQDWC-EAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-----ergli~~~~~~~-e~f~~yp~t~Dl~H~~~~ 551 (629)
.....+||.|||.|=....|+-.-.-.+-++... +..+..+. +.+-++.+..-. |.|.+=+..||+|=+-=+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3567799999999999988866533222333332 35788887 344455444222 556555589999765333
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------H-----HHHHHHHHHhcCCCeEEEeecC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-----------E-----MLVKIRSITEGMRWKSQIMDHE 607 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------~-----~~~~~~~~~~~l~w~~~~~~~e 607 (629)
.... ...++..+|...-.-|||+|.+|+.++. + ....+++|.++=.+.+...+.+
T Consensus 132 lghL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHL-TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccC-CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 2222 2235566888888999999999997543 1 1566777777777766554444
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.16 Score=54.72 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=82.7
Q ss_pred CeeeecCCCCCCCCchHHH-HHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 190 HRFRFPGGGTTFPNGADAY-IDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 190 ~~~~Fpgggt~f~~ga~~~-i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
+.--|-.|+-+|....+.- .+.+. +-+.. -..-++||-+|.|.|--+++|++.- ....|+-+|++++|++.++..
T Consensus 256 d~rLYldG~LQfsTrDe~RYhEsLV-~pals~~~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~ 333 (508)
T COG4262 256 DLRLYLDGGLQFSTRDEYRYHESLV-YPALSSVRGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHAT 333 (508)
T ss_pred ceEEEEcCceeeeechhhhhhheee-ecccccccccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhh
Confidence 3344556667774443322 22221 11111 1224689999999999999998873 244678889999999999832
Q ss_pred -----------CCCeEEEEecCCCC-CCCCCCeeEEEecCcccccccC-----HHHHHHHHHhcccCCcEEEEEeC
Q 006834 267 -----------GVPAMIGVISSKRL-PYPARAFDMAHCSGCLIPWYMY-----DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 267 -----------g~~~~~~v~d~~~L-p~pd~sFDlV~~s~~L~h~~~d-----~~~~L~el~RvLKPGG~liis~P 325 (629)
.+.+.+...|+.++ .-..+.||.|+.-.- .+-.+. -..+..-+.|.|+++|.+++..-
T Consensus 334 vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 334 VLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred HhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 13455666555443 233568999996321 011111 13577888999999999999653
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.16 Score=50.54 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH----HcCCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL----ERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~----erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+++|||+|.|+|..+..-+..|.. .++..|+.+..++..+ .++..+.+...|... .+..||+|+.+.++..
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 559999999999888887777754 2344577776666554 334555555444332 5678999999888733
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
-. .-..++. ..+.|+-.|.-++.+
T Consensus 155 ~~-~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 155 HT-EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ch-HHHHHHH-HHHHHHhCCCEEEEe
Confidence 22 2344555 666666666666654
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.17 Score=56.61 Aligned_cols=130 Identities=16% Similarity=0.307 Sum_probs=78.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC--CC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST--YP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~--yp-~t~Dl~H~~~ 550 (629)
..|||+|||+|.|+.+|++.. ..|+.+|.++.++..+.+. |+ +-.++ |+-+.+.. ++ .+||+|-++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d- 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD- 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC-
Confidence 369999999999999998874 3567777777788776653 43 22333 33333322 32 679987652
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCeEE---EeecCCCCCCCceEEEEEe
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEGMRWKSQ---IMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~K 621 (629)
..|..+..++..+-+ |+|++.++++ ++...-..++.+.+. -|++. .+|.=.....=|-|.+..|
T Consensus 375 -----PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~-gY~l~~i~~~DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 375 -----PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEA-GYRLKRAGMLDMFPHTGHVESMALFER 442 (443)
T ss_pred -----cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhC-CcEEEEEEEeccCCCCCcEEEEEEEEe
Confidence 134445666655555 6999999998 444445556655432 35543 4454333333355554443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.068 Score=59.42 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=66.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCC---cccceeecccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYP---RTYDLIHASGV 551 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp---~t~Dl~H~~~~ 551 (629)
.|||++||+|.|+..|++.. -.|+.+|..+.++..+.+ .|+ +-+++ |..+.+..++ .+||+|-.+-
T Consensus 295 ~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP- 370 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP- 370 (431)
T ss_pred EEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc-
Confidence 59999999999999998753 245556665566665544 243 33343 3333233332 4688765411
Q ss_pred ccccCCCcC-HHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 552 FSIYQDRCD-ITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 552 fs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
.|-. .+.++.++.+ |+|+|.++++-+...+.+--+.+..-.|++.
T Consensus 371 -----Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 371 -----PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred -----CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 2222 3556666665 8999999998666655444444444456554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.31 Score=50.91 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=57.8
Q ss_pred CCeEEEeCCCC--chHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCC--eEEEEecCCCCC-----------CCC
Q 006834 223 IRTAVDTGCGV--ASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVP--AMIGVISSKRLP-----------YPA 284 (629)
Q Consensus 223 ~~~VLDIGCGt--G~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~--~~~~v~d~~~Lp-----------~pd 284 (629)
.+..||||||. ......+++.-.....+.=+|+.+-.+..++.. ..+ ..++.+|..+.. +.-
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 56899999993 344566665422222444559999999877653 344 678888865421 111
Q ss_pred CCeeEEEecCccccccc--CHHHHHHHHHhcccCCcEEEEEe
Q 006834 285 RAFDMAHCSGCLIPWYM--YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~liis~ 324 (629)
..-=.++...+|+++.+ ++..++..+...|.||.+|+|+.
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 12224556677867764 37789999999999999999995
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.013 Score=51.79 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=38.8
Q ss_pred EEeCCCCchHHHHHHHcCCcE--eEEEeecCcH---HHHHHHHHcC--CCeEEEEecCCCC-C-CCCCCeeEEEecCccc
Q 006834 227 VDTGCGVASWGAYLLKRDILT--MSFARRDTHE---AQVQFALERG--VPAMIGVISSKRL-P-YPARAFDMAHCSGCLI 297 (629)
Q Consensus 227 LDIGCGtG~~a~~La~~g~~~--v~i~gvDiS~---~~i~~A~erg--~~~~~~v~d~~~L-p-~pd~sFDlV~~s~~L~ 297 (629)
||+|+..|..+..+++..... ..++++|..+ ...+..++.+ ..+.+..++.... + ++.++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999888888743221 2466779888 3444444332 3477777765432 1 33579999997442
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
|-.+.....+..+.+.|+|||++++-
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 22223456788999999999999874
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.089 Score=55.33 Aligned_cols=132 Identities=11% Similarity=0.137 Sum_probs=74.8
Q ss_pred CCeeEEEeecccchhHHhhhhC----CC-eEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCCC-----Cccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSK----YP-VWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFSTY-----PRTY 543 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~y-----p~t~ 543 (629)
.+-++||++|+++|..+.+|+. .+ |+++=.-|.... -..+.+.+-|+ |-+.+ +-.+.+..+ +.+|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~-~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE-VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 3456899999999999988875 22 333222221111 12223344455 22332 222322222 3589
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHH----HHhcCCCeEEEeecC
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------------EMLVKIRS----ITEGMRWKSQIMDHE 607 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~----~~~~l~w~~~~~~~e 607 (629)
|+|=.++ +.-+...++...-+.|||||.+|+-+-. .....|++ +.+.=++++.+.-.
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi- 268 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI- 268 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe-
Confidence 9877632 2334567888888999999999884210 01123333 45555677777644
Q ss_pred CCCCCCceEEEEEec
Q 006834 608 SGPFNPEKILFAAKT 622 (629)
Q Consensus 608 ~~~~~~e~~l~~~K~ 622 (629)
.+.+++++|+
T Consensus 269 -----gDGl~i~~K~ 278 (278)
T PLN02476 269 -----GDGMTICRKR 278 (278)
T ss_pred -----CCeeEEEEEC
Confidence 3568888884
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.051 Score=54.64 Aligned_cols=133 Identities=16% Similarity=0.258 Sum_probs=78.2
Q ss_pred CCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCCC-----Ccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFSTY-----PRT 542 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~y-----p~t 542 (629)
..+-++||.+|+++|--|.+|++- .|+++-+-|.... -..+.+..-|+ |-+.+ +..+.+... +.+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 345678999999999877777642 3455544432221 22233344466 44444 344433332 358
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCeEEEeec
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------------EMLVKIRSITEGMRWKSQIMDH 606 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~~~ 606 (629)
||+|=.++ +.-+....+..+-+.|||||.+|+-+.. .+..-.+.+.+.=+.++.+...
T Consensus 122 fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi 195 (205)
T PF01596_consen 122 FDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI 195 (205)
T ss_dssp EEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred eeEEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence 99977643 3334556677777999999999986321 1223344445556777777654
Q ss_pred CCCCCCCceEEEEEec
Q 006834 607 ESGPFNPEKILFAAKT 622 (629)
Q Consensus 607 e~~~~~~e~~l~~~K~ 622 (629)
.+.|++++|+
T Consensus 196 ------gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ------GDGLTLARKR 205 (205)
T ss_dssp ------TTEEEEEEE-
T ss_pred ------CCeeEEEEEC
Confidence 3679999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.054 Score=59.05 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=66.9
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec---
Q 006834 454 LREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ--- 530 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~--- 530 (629)
+.++-..|.+ .++|.-+...+.++. -++|+|||+|+...+...-.. -++...+....++...-+ ..++.+-
T Consensus 88 ~~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~-~~~~~~l~~k 161 (364)
T KOG1269|consen 88 GNSNEMFWIR-HEGIVALRESCFPGS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANE-LAKKAYLDNK 161 (364)
T ss_pred hhHHHHHHHh-hcchHHHhhcCcccc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHH-HHHHHHhhhh
Confidence 4444455553 445555544556665 478999999999988865432 233444443222222221 1122111
Q ss_pred -----cccccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 531 -----DWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 531 -----~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.|+. ...++ .+||.+-+. ....+.-+.+.++.|+.|+|+|||++|.-
T Consensus 162 ~~~~~~~~~-~~~fedn~fd~v~~l---d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 162 CNFVVADFG-KMPFEDNTFDGVRFL---EVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cceehhhhh-cCCCCccccCcEEEE---eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 1221 22344 899975431 11122256788999999999999999984
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.066 Score=49.55 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=34.3
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
++||+|||.|.++..+++.+... .++++|.++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~-~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEG-RVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCC-EEEEEecCHHHHHHHHHH
Confidence 48999999999999999887542 566779999999988764
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.21 Score=49.70 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=58.3
Q ss_pred CccCCCCCeEEEeCCCCchHHHHHHHc-CC--cEeEEEeecC-------cHHHHHHHHHcC-CCeEEEEecCCCCC----
Q 006834 217 PLTGGNIRTAVDTGCGVASWGAYLLKR-DI--LTMSFARRDT-------HEAQVQFALERG-VPAMIGVISSKRLP---- 281 (629)
Q Consensus 217 ~~~~g~~~~VLDIGCGtG~~a~~La~~-g~--~~v~i~gvDi-------S~~~i~~A~erg-~~~~~~v~d~~~Lp---- 281 (629)
..+++. +|+|+=-|.|.|++.+... +. .+.++.+.|. .+.+-..+++.. .+....-.....++
T Consensus 45 Glkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~ 122 (238)
T COG4798 45 GLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQK 122 (238)
T ss_pred ccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCc
Confidence 445555 9999999999999998874 22 2445544333 122222222221 11111111111122
Q ss_pred ---CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 ---YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ---~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+..++|.++....+ | ......+..++++.|||||.+++..+
T Consensus 123 ~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 123344444443333 3 22356799999999999999999864
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.05 Score=55.41 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=75.5
Q ss_pred eEEEeecccchhHHhhhhCCCe-EEEEecCCCCCCCchHHH----Hhhcc----cceec-cccccCCCCC-cccce-eec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPV-WVMNVVPFHSNPDTLGAI----YERGL----IGTYQ-DWCEAFSTYP-RTYDL-IHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~----~ergl----i~~~~-~~~e~f~~yp-~t~Dl-~H~ 548 (629)
-+|||.-.|+|=+|..-.+++- -|..| ..|. |-|+.+ +-|+| |-+++ |--|...+++ .+||. ||=
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~Vitv-Ekdp--~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITV-EKDP--NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEE-eeCC--CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4699999999999998888765 22222 2221 222222 23444 45555 4447778899 78995 786
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEE--------eCHHHHHHHHHHHhcCCCeEEEe
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFR--------DTVEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~--------d~~~~~~~~~~~~~~l~w~~~~~ 604 (629)
--=||... .==-+.+-.|+.|||||||.+.=- --.+....|.+.+.+.-....-.
T Consensus 213 PPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 213 PPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred CCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 55566433 111256889999999999998652 11245566777777777764433
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.13 Score=55.11 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=62.5
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH--HcCC-------CeEEEEecCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL--ERGV-------PAMIGVISSKR 279 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~--erg~-------~~~~~v~d~~~ 279 (629)
.+.+....+.. .+.+|||+|.|.|.-+..+..-.++--+.+-++.|+..-+... ++++ +..-++ ..+
T Consensus 102 L~~L~~~~~df--apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt--~dR 177 (484)
T COG5459 102 LDELQKRVPDF--APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT--EDR 177 (484)
T ss_pred HHHHHHhCCCc--CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc--hhc
Confidence 33444444332 3447999999999754444333332222233466655443332 1111 011122 234
Q ss_pred CCCC-CCCeeEEEecCcccccccC--HHHHHHHHHhcccCCcEEEEEeC
Q 006834 280 LPYP-ARAFDMAHCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 280 Lp~p-d~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~liis~P 325 (629)
++++ ...|++|+...-|.|.... ....++.+-.++.|||.|+|..+
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5544 4567887776655554422 23488889999999999999865
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.29 Score=51.92 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=49.8
Q ss_pred chHHHHHHHHhhcCccCCC---CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---C----CCeEEE
Q 006834 204 GADAYIDNINELIPLTGGN---IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---G----VPAMIG 273 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~---~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g----~~~~~~ 273 (629)
++-.|+..|.++|...... ..++||||+|....-..|..+- ....+++.|+++..++.|++. + ..+.+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 3456788888887653321 3579999999875544444331 234678889999999999863 3 134454
Q ss_pred EecCC-C----CCCCCCCeeEEEecCcccccc
Q 006834 274 VISSK-R----LPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 274 v~d~~-~----Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
..... . +..+++.||+..|+.-++.-.
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----SS-
T ss_pred EcCCccccchhhhcccceeeEEecCCccccCh
Confidence 33221 1 122356899999999774433
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.038 Score=55.71 Aligned_cols=97 Identities=19% Similarity=0.323 Sum_probs=50.5
Q ss_pred HHHhhcccCCCCeeEEEeecccchhHHhhhhCC--Ce-EEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCC
Q 006834 468 YKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY--PV-WVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFST 538 (629)
Q Consensus 468 y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v-~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~ 538 (629)
+...+. +.+|. .|||+|||+|=++|-|... ++ .|..| +..+.....+.++ |+ +.+.+ ......
T Consensus 64 ~l~~L~-l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~v---E~~~~l~~~A~~~l~~~~~~nv~~~~--gdg~~g 135 (209)
T PF01135_consen 64 MLEALD-LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSV---ERDPELAERARRNLARLGIDNVEVVV--GDGSEG 135 (209)
T ss_dssp HHHHTT-C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEE---ESBHHHHHHHHHHHHHHTTHSEEEEE--S-GGGT
T ss_pred HHHHHh-cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEE---CccHHHHHHHHHHHHHhccCceeEEE--cchhhc
Confidence 333343 67776 5999999999888877643 22 23332 2222233332222 33 33343 123445
Q ss_pred CC--cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 539 YP--RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 539 yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+| ..||.||+.+ ..+.+-.++-+-|||||.+|+-
T Consensus 136 ~~~~apfD~I~v~~---------a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 WPEEAPFDRIIVTA---------AVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp TGGG-SEEEEEESS---------BBSS--HHHHHTEEEEEEEEEE
T ss_pred cccCCCcCEEEEee---------ccchHHHHHHHhcCCCcEEEEE
Confidence 55 5799999832 2233334455569999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.14 Score=52.12 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=84.8
Q ss_pred HHHHHhhcccCCCCeeEEEeecccchhHHhhhhC----CC-eEEEEecCCCCCCCchHHHHhhcc---cceec--ccccc
Q 006834 466 TYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSK----YP-VWVMNVVPFHSNPDTLGAIYERGL---IGTYQ--DWCEA 535 (629)
Q Consensus 466 ~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~----~~-v~~mnv~~~~~~~~~l~~~~ergl---i~~~~--~~~e~ 535 (629)
..+..++- ....-++||.+|.+.|=-|..|+. .+ +++.-+-|.-.. ...+...+-|+ |-.+. |+-+.
T Consensus 48 g~~L~~L~--~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~-~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 48 GALLRLLA--RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAE-IARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred HHHHHHHH--HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHH-HHHHHHHHcCCcceEEEEecCcHHHH
Confidence 34444442 233566799999999866666643 23 333322222221 23334445565 33444 77777
Q ss_pred CCC-CCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE---------eC-----HHHHHHHHHHHhcCCCe
Q 006834 536 FST-YPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR---------DT-----VEMLVKIRSITEGMRWK 600 (629)
Q Consensus 536 f~~-yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---------d~-----~~~~~~~~~~~~~l~w~ 600 (629)
++. ...+||+|=.+. +.-+-+..|-+.-++|||||.+|+- ++ .....+++.....+.++
T Consensus 125 l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (219)
T COG4122 125 LSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLED 198 (219)
T ss_pred HHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhC
Confidence 774 779999976521 4455677899999999999999884 11 23444556665555554
Q ss_pred ----EEEeecCCCCCCCceEEEEEec
Q 006834 601 ----SQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 601 ----~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
..++ | ..+.++++.|.
T Consensus 199 ~~~~t~~l-----P-~gDGl~v~~k~ 218 (219)
T COG4122 199 PRYDTVLL-----P-LGDGLLLSRKR 218 (219)
T ss_pred cCceeEEE-----e-cCCceEEEeec
Confidence 3333 2 23789999885
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.12 Score=51.65 Aligned_cols=128 Identities=15% Similarity=0.214 Sum_probs=70.8
Q ss_pred chhhHHHHHHHHHHHH-HhhcccCCCCeeEEEeecccch----hHHhhhhC--C--CeEEEEecCCCCCCCchHHHHhhc
Q 006834 454 LREDNELWKDRMTYYK-KIDGLFHKGRYRNVMDMNAYLG----GFAAAMSK--Y--PVWVMNVVPFHSNPDTLGAIYERG 524 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~-~~~~~~~~~~~R~vlD~~~g~G----gfaa~l~~--~--~v~~mnv~~~~~~~~~l~~~~erg 524 (629)
|--|...|..-.+... .++.....++.=.|..+||++| +.|-.|.+ . .-|-+.|..+|-+...|+.+ .+|
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A-r~G 83 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA-RAG 83 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH-HHT
T ss_pred ccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH-HhC
Confidence 4555566665444333 2222223345557999999999 55555555 1 22567888888886666654 455
Q ss_pred ccc------------------------------------eeccccccCCCCCcccceeeccccccccCCCcCHHHHHHHH
Q 006834 525 LIG------------------------------------TYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEM 568 (629)
Q Consensus 525 li~------------------------------------~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~ 568 (629)
..+ ..|+.++ ....+.-||+|=|-.|+-... .-....++--+
T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l 161 (196)
T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRL 161 (196)
T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHH
T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHH
Confidence 522 2344444 233448899999999877443 33457799999
Q ss_pred hhcccCCcEEEEEeCH
Q 006834 569 DRILRPEGTVIFRDTV 584 (629)
Q Consensus 569 dRiLrPgG~~i~~d~~ 584 (629)
-+.|+|||++++....
T Consensus 162 ~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 162 HRSLKPGGYLFLGHSE 177 (196)
T ss_dssp GGGEEEEEEEEE-TT-
T ss_pred HHHcCCCCEEEEecCc
Confidence 9999999999997554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.4 Score=51.77 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=65.0
Q ss_pred CCeEEEeCCC-CchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCG-VASWGAYLLK-RDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCG-tG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
+.+|+=+|+| .|.++..+++ .+.. ++++|.+++-.+.|++-|....+...+.....--.+.||+|+..-.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~---Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAE---VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 3378888776 5688888887 5654 4555999999999999986654442222222211234999996442
Q ss_pred cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 301 MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 301 ~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
...+....+.||+||.+++.+-+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 34578889999999999999743
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.25 Score=52.65 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=74.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
..|||+|||+|.|+..|++++ ..|+.+|.++.++..+.+ .|+ +-.++ |..+-.......||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d---- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN---- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC----
Confidence 469999999999999999875 367777777677766543 344 22222 2111111122579988764
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH-HHHHHHHHhcCCCeEE---EeecCCCCCCCceEEEEEe
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDTVEM-LVKIRSITEGMRWKSQ---IMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~K 621 (629)
..|..+...+.++=.-++|++.++++-+... ...++.+ . -|++. .+|.=.....=|-|.+.+|
T Consensus 248 --PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 --PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred --CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 2344444444444444789999999855443 3444444 3 46554 3443333333466655544
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.079 Score=51.59 Aligned_cols=99 Identities=24% Similarity=0.343 Sum_probs=52.2
Q ss_pred CeeEEEeecccch--hHHhhhh--CCCeEEEEecCCCCCCCchHHHHhhcc------cc-eeccccccC--CCC-Ccccc
Q 006834 479 RYRNVMDMNAYLG--GFAAAMS--KYPVWVMNVVPFHSNPDTLGAIYERGL------IG-TYQDWCEAF--STY-PRTYD 544 (629)
Q Consensus 479 ~~R~vlD~~~g~G--gfaa~l~--~~~v~~mnv~~~~~~~~~l~~~~ergl------i~-~~~~~~e~f--~~y-p~t~D 544 (629)
+-++||++|||.| |.+++.. ...|++.=.-+ -...+..+.++.. +- ...+|.+.. ... ++.||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch---hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3457999999998 5555544 22333322211 1234445555432 22 334898744 112 36899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+|-+.-++=. .-..+.++.=+.++|.|+|.+++..+
T Consensus 122 ~IlasDv~Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYD---EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccch---HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9998444322 12346688888999999999888643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.1 Score=45.19 Aligned_cols=115 Identities=16% Similarity=0.042 Sum_probs=71.4
Q ss_pred EEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCCC-CCeeEEEecCcccc
Q 006834 226 AVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYPA-RAFDMAHCSGCLIP 298 (629)
Q Consensus 226 VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~pd-~sFDlV~~s~~L~h 298 (629)
|.||||--|.+..+|++++... .+.++|+++.-++.|++. + ..+.+..+|... +++. +..|.|+.+.+=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~-~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAP-KAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEE-EEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 6899999999999999998643 566779999999999864 3 346777777543 2233 33788776443211
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeecc
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 364 (629)
-...+|.+....++..-.|++. |.. ....++......+|..+.+
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILq-P~~------------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQ-PNT------------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEE-ESS-------------------HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEe-CCC------------------ChHHHHHHHHHCCCEEEEe
Confidence 1245677777777766677776 211 1345777778888866554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.53 Score=48.67 Aligned_cols=128 Identities=22% Similarity=0.200 Sum_probs=74.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|+|||||.=-++.......... .++++|++..++++...- +.+..+.+.|...-+ +....|+++..-++ |
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l-p 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL-P 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H-H
T ss_pred CchhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH-H
Confidence 5699999999999888777654433 678889999999988753 667778777765543 45679999986666 4
Q ss_pred cccCH-HHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcce
Q 006834 299 WYMYD-GLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWK 360 (629)
Q Consensus 299 ~~~d~-~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~ 360 (629)
..+.. .....++...++ .=.++++.|-..--. +..-........++..+..-.|.
T Consensus 183 ~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~g------R~~gm~~~y~~~fe~~~~~~~~~ 238 (251)
T PF07091_consen 183 CLERQRRGAGLELLDALR-SPHVVVSFPTRSLGG------RNKGMEQTYSAWFEALAAERGWI 238 (251)
T ss_dssp HHHHHSTTHHHHHHHHSC-ESEEEEEEES-------------TTHHHCHHHHHHHHCCTTCEE
T ss_pred HHHHHhcchHHHHHHHhC-CCeEEEecccccccc------CccccccCHHHHHHHhcccCCce
Confidence 33221 122223333332 235566655332222 22223334456677777776665
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.32 Score=48.15 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=66.4
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
++.|+|.|+|.++...++..-.+ .+++.++.-.+.|.++ | .+..++.+|+....| ...|+|+|-..=.-+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rV---iAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERV---IAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceE---EEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 79999999999877776664334 4559999988888887 2 467788888888777 568999983321111
Q ss_pred -ccCHHHHHHHHHhcccCCcEEEE
Q 006834 300 -YMYDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 300 -~~d~~~~L~el~RvLKPGG~lii 322 (629)
.+.....+..+...||-.+.++=
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hcccccHHHHHHHHHhhcCCcccc
Confidence 11234577777788888887764
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.14 Score=57.45 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~ 278 (629)
+.+...+.+.+....++ .+||+-||||.++..+++.... +.|+++++.++..|+++ | .++.|.++.++
T Consensus 369 evLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 44455566666665554 8999999999999999987554 45669999999999865 3 35788877443
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.17 Score=50.70 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=55.1
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-------C-----CCeEEEEecCCC-CC--CCCCC-ee
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-------G-----VPAMIGVISSKR-LP--YPARA-FD 288 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-------g-----~~~~~~v~d~~~-Lp--~pd~s-FD 288 (629)
.+.|||||-|.+...|+...++. -|.|.++-...-+..++| . .++.+...++.. +| |..++ +-
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdt-LiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDT-LILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred eEEeeccCccchhhhccccCccc-eeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 68999999999999999998765 356767655544444432 1 122222222211 12 11111 12
Q ss_pred EEEecCcccccccC-------HHHHHHHHHhcccCCcEEEEEe
Q 006834 289 MAHCSGCLIPWYMY-------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 289 lV~~s~~L~h~~~d-------~~~~L~el~RvLKPGG~liis~ 324 (629)
+.++..-- |+... ...++.+..=+|++||.++..+
T Consensus 142 mff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222111 11111 1257899999999999998874
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.14 Score=53.79 Aligned_cols=124 Identities=23% Similarity=0.337 Sum_probs=79.1
Q ss_pred CCeeEEEeecccchhHHh-hhhCCC-----eEEEEecCCCCCCCchHHHHhhcccce---eccccccCCCCC---cccce
Q 006834 478 GRYRNVMDMNAYLGGFAA-AMSKYP-----VWVMNVVPFHSNPDTLGAIYERGLIGT---YQDWCEAFSTYP---RTYDL 545 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa-~l~~~~-----v~~mnv~~~~~~~~~l~~~~ergli~~---~~~~~e~f~~yp---~t~Dl 545 (629)
++--.||||-||.|-.-- +|.+.+ |..--..|..-. .-...|.+|||=.+ .+.=|-...+|- -.++|
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~-~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE-KGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH-HHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 554569999999874311 112222 222222332222 45678999999443 222222222233 45789
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhc----CCCeEE
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV--EMLVKIRSITEG----MRWKSQ 602 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~----l~w~~~ 602 (629)
+-.+|||.+..+.-.+..-|.=+-++|.|||++|.|-.. -.++.|...+.+ --|-.+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE
Confidence 999999999998877788889999999999999999643 245666666655 357766
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.33 Score=50.69 Aligned_cols=93 Identities=16% Similarity=0.177 Sum_probs=61.2
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh------hcc----cceeccccccCCCCCcccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE------RGL----IGTYQDWCEAFSTYPRTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e------rgl----i~~~~~~~e~f~~yp~t~D 544 (629)
+..+.-++||=+|.|-||.++.+.+.+- +|+-++-.+..+.+..+ .++ +.++ .| -.....++||
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~-~~--~~~~~~~~fD 141 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHA-KQ--LLDLDIKKYD 141 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEe-eh--hhhccCCcCC
Confidence 3456789999999999999999999873 44434333234433333 122 1111 01 1112247899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+|=.+.+|+ +.....+.|.|+|||.++..
T Consensus 142 VIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 999988776 45667789999999999995
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.52 Score=44.66 Aligned_cols=97 Identities=22% Similarity=0.155 Sum_probs=59.3
Q ss_pred EEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC--CCCCCeeEEEecCcccccccC-----H---HHHHHHHHhc
Q 006834 250 FARRDTHEAQVQFALER----G--VPAMIGVISSKRLP--YPARAFDMAHCSGCLIPWYMY-----D---GLYLLEVDRV 313 (629)
Q Consensus 250 i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~L~h~~~d-----~---~~~L~el~Rv 313 (629)
+.+.|+-+++++.++++ + .++.+...+=+.+. .+.+.+|+|+.+....+-.+. + -.++..+.++
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~l 81 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALEL 81 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHh
Confidence 34569999999999876 2 24677665544554 233589999988776554321 1 2589999999
Q ss_pred ccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhc
Q 006834 314 LRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLC 358 (629)
Q Consensus 314 LKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~ 358 (629)
|+|||.++++.-+ .+. .-.+|.+.+++.++.+.
T Consensus 82 L~~gG~i~iv~Y~----GH~--------gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 82 LKPGGIITIVVYP----GHP--------GGKEESEAVEEFLASLD 114 (140)
T ss_dssp EEEEEEEEEEE------STC--------HHHHHHHHHHHHHHTS-
T ss_pred hccCCEEEEEEeC----CCC--------CCHHHHHHHHHHHHhCC
Confidence 9999999998521 111 12345666777766654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=92.14 E-value=1 Score=48.69 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=57.9
Q ss_pred CeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc-cc---------ceec-cccccCCCCCccccee
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG-LI---------GTYQ-DWCEAFSTYPRTYDLI 546 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg-li---------~~~~-~~~e~f~~yp~t~Dl~ 546 (629)
..++||-+|+|.|+.++.+.+. ++--+-++..|. ..++++.+.- +. -++. |=-+-+..-++.||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 5678999999999999988775 453344455544 4666665431 11 1111 1001111224689998
Q ss_pred eccccccccC-CCcC---HHHHHH-HHhhcccCCcEEEEE
Q 006834 547 HASGVFSIYQ-DRCD---ITNILL-EMDRILRPEGTVIFR 581 (629)
Q Consensus 547 H~~~~fs~~~-~~c~---~~~~l~-e~dRiLrPgG~~i~~ 581 (629)
=++ ++.-.. ..+. -..++. .+.|.|+|||.+++.
T Consensus 181 i~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred Eec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 876 332111 1121 123455 689999999999874
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.27 Score=60.47 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=69.1
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHH---Hhh----------------cc---cceec-cccccCC
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAI---YER----------------GL---IGTYQ-DWCEAFS 537 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~---~er----------------gl---i~~~~-~~~e~f~ 537 (629)
.|||+|||.|-.+-+|+++ +- -.|+.+|-++..+.++ .++ ++ +-+++ ||.+.+.
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5999999999999999765 31 1345555555566555 222 11 33444 6765553
Q ss_pred CCCcccceeeccc--------------------------------ccccc--CCC-cCHHHHHHHHhhcccCCcEEEEEe
Q 006834 538 TYPRTYDLIHASG--------------------------------VFSIY--QDR-CDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 538 ~yp~t~Dl~H~~~--------------------------------~fs~~--~~~-c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.....||+|-++= |+..+ .+. -.+..|+.+.-++|||||++++--
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2112588754421 11110 011 012458899999999999999965
Q ss_pred CHHHHHHHH-HHHhcCCCeE
Q 006834 583 TVEMLVKIR-SITEGMRWKS 601 (629)
Q Consensus 583 ~~~~~~~~~-~~~~~l~w~~ 601 (629)
..+.-..|+ +++.+..|+.
T Consensus 279 G~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 279 GGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred CccHHHHHHHHHHHHCCCCe
Confidence 544455666 4666555544
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.21 Score=53.68 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred HHHHHHhhc---ccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCC---CCchHHHHhhcc---cceecccccc
Q 006834 465 MTYYKKIDG---LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSN---PDTLGAIYERGL---IGTYQDWCEA 535 (629)
Q Consensus 465 v~~y~~~~~---~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~---~~~l~~~~ergl---i~~~~~~~e~ 535 (629)
...|...+- .+-.+++ |||+|||+|-....=++.+ .-+|..++.+ .-..+++.+-|+ |.+++.--|.
T Consensus 45 t~aYr~~i~~n~~lf~dK~--VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEd 120 (346)
T KOG1499|consen 45 TLAYRNAILQNKHLFKDKT--VLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVED 120 (346)
T ss_pred HHHHHHHHhcchhhcCCCE--EEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEE
Confidence 345665431 3455554 9999999997544434333 1222333333 234566677777 5555544455
Q ss_pred CCCCC-cccceeeccccccccCCCcC-----HHHHHHHHhhcccCCcEEEE
Q 006834 536 FSTYP-RTYDLIHASGVFSIYQDRCD-----ITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 536 f~~yp-~t~Dl~H~~~~fs~~~~~c~-----~~~~l~e~dRiLrPgG~~i~ 580 (629)
. ..| .-.|+|=+ -|..-|. +..+|.-=||.|.|||.++=
T Consensus 121 i-~LP~eKVDiIvS-----EWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 121 I-ELPVEKVDIIVS-----EWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred E-ecCccceeEEee-----hhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 4 456 77888765 3333333 23477777999999998763
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.41 Score=54.03 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=58.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhC----CCeEEEEecCCCCCCC---chHHHHhh-cc--cceec-cccccCCCCCccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSK----YPVWVMNVVPFHSNPD---TLGAIYER-GL--IGTYQ-DWCEAFSTYPRTY 543 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~----~~v~~mnv~~~~~~~~---~l~~~~er-gl--i~~~~-~~~e~f~~yp~t~ 543 (629)
..++. .||||.|+-||=..+|++ .+..+ ..|.+.. .+.-+.+| |+ +-+.+ |-..--..+|..|
T Consensus 111 ~~pg~--~VLD~CAAPGgKTt~la~~l~~~g~lv----A~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQ--RVLDMAAAPGSKTTQIAALMNNQGAIV----ANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEE----EEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhc
Confidence 35565 499999999998777755 34433 3333323 34444555 54 22222 2111112457889
Q ss_pred ceee----cccc--ccccCC---CcC---H-------HHHHHHHhhcccCCcEEEEE
Q 006834 544 DLIH----ASGV--FSIYQD---RCD---I-------TNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 544 Dl~H----~~~~--fs~~~~---~c~---~-------~~~l~e~dRiLrPgG~~i~~ 581 (629)
|.|- |+|. |..-.+ +-. + ..||...-+.|||||.+|.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9988 5544 332110 001 1 23888899999999999986
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.88 Score=49.16 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHhhcC-ccCCCCCeEEEeCCCCchHHHHHHHcCC---------------cEeEEEeecC-----cHHHHHHHH-----
Q 006834 211 NINELIP-LTGGNIRTAVDTGCGVASWGAYLLKRDI---------------LTMSFARRDT-----HEAQVQFAL----- 264 (629)
Q Consensus 211 ~I~~lL~-~~~g~~~~VLDIGCGtG~~a~~La~~g~---------------~~v~i~gvDi-----S~~~i~~A~----- 264 (629)
.|.+++. ......-+|+|+||..|..+..+.+.-+ ..+.+.-.|+ +.-.-....
T Consensus 4 ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~ 83 (334)
T PF03492_consen 4 AIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSL 83 (334)
T ss_dssp HHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHH
T ss_pred HHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhcc
Confidence 3444432 2334456899999999988877665311 1233433343 211111110
Q ss_pred HcCCCeEEE-E-ecCCCCCCCCCCeeEEEecCccccccc
Q 006834 265 ERGVPAMIG-V-ISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 265 erg~~~~~~-v-~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
....++... + +....=-||+++.|+++++.++ ||..
T Consensus 84 ~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~al-HWLS 121 (334)
T PF03492_consen 84 KKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYAL-HWLS 121 (334)
T ss_dssp HHTTSEEEEEEES-TTS--S-TT-EEEEEEES-T-TB-S
T ss_pred CCCceEEEEecCchhhhccCCCCceEEEEEechh-hhcc
Confidence 112233222 1 1222223789999999999999 6653
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.6 Score=49.71 Aligned_cols=120 Identities=19% Similarity=0.172 Sum_probs=81.8
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC---cEeEEEeecCcHHHHHHHHHc----CCC--eEEEEe
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI---LTMSFARRDTHEAQVQFALER----GVP--AMIGVI 275 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~---~~v~i~gvDiS~~~i~~A~er----g~~--~~~~v~ 275 (629)
.+..++.|.+++...+.. +|+|-.||+|.+.....+..- ....++|.|++......|+-+ +++ +.....
T Consensus 171 P~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 171 PREVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred hHHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 356677888888764444 899999999988766655321 125789999999999999854 443 455555
Q ss_pred cCCCCCC-----CCCCeeEEEecCccc--ccccC----------------------HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 276 SSKRLPY-----PARAFDMAHCSGCLI--PWYMY----------------------DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 276 d~~~Lp~-----pd~sFDlV~~s~~L~--h~~~d----------------------~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+...-|. ..+.||.|+++.-+. .|... ...+++.+...|+|||...++.|.
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 5544442 236799999865542 12110 136899999999999977777663
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.86 Score=50.13 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=32.9
Q ss_pred CCCCCeeEEEecCcccccccC-HH-------------------------------------HHHHHHHhcccCCcEEEEE
Q 006834 282 YPARAFDMAHCSGCLIPWYMY-DG-------------------------------------LYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d-~~-------------------------------------~~L~el~RvLKPGG~liis 323 (629)
||+++.++++++.++ ||... |. .+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~sl-HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFSL-HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeeccc-eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 789999999999999 77643 11 1233334568999999998
Q ss_pred eCCC
Q 006834 324 GPPI 327 (629)
Q Consensus 324 ~P~~ 327 (629)
....
T Consensus 237 ~~Gr 240 (386)
T PLN02668 237 CLGR 240 (386)
T ss_pred EecC
Confidence 7544
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.3 Score=44.11 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSF 250 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i 250 (629)
....+|+|||+|.+.--|.+.|..+.++
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccc
Confidence 3469999999999999999999887776
|
; GO: 0008168 methyltransferase activity |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.37 Score=48.38 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=80.8
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHH----HHhhccc----ceecccccc-------CCCCCcccce
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGA----IYERGLI----GTYQDWCEA-------FSTYPRTYDL 545 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~ergli----~~~~~~~e~-------f~~yp~t~Dl 545 (629)
.||.+|+|+|--|++++.. |- +.--|+|...+.+.- +.+.|+. .+.-|.++. -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999998888765 32 234577766444433 3466762 222233322 2235689998
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------H----------------HHHHHHHHHHhcCC
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-----------V----------------EMLVKIRSITEGMR 598 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------~----------------~~~~~~~~~~~~l~ 598 (629)
|-|..++-.-. ....+-+|.+..|+|+|||.+++--+ . --++.|..++..-.
T Consensus 106 i~~~N~lHI~p-~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISP-WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcC-HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 66533332211 12235699999999999999999411 0 11556777777666
Q ss_pred CeEEEeecCCCCCCCceEEEEEe
Q 006834 599 WKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 599 w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
+... +.-+-| ...++||.+|
T Consensus 185 L~l~--~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELE--EDIDMP-ANNLLLVFRK 204 (204)
T ss_pred CccC--cccccC-CCCeEEEEeC
Confidence 5542 112233 2578888887
|
The function of this family is unknown. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.2 Score=46.16 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=67.6
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC----C-CeEEEEecCCCCCCCchHHHHh---h-cccc-eec---cccccCCCCC
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK----Y-PVWVMNVVPFHSNPDTLGAIYE---R-GLIG-TYQ---DWCEAFSTYP 540 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~e---r-gli~-~~~---~~~e~f~~yp 540 (629)
.|.+|.. |||.|.|.|.++++|+. . .|+..-.- +...+.+.+ . ||.- +-+ |.++... +
T Consensus 91 gi~pg~r--VlEAGtGSG~lt~~La~~vg~~G~v~tyE~r-----~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--~ 161 (256)
T COG2519 91 GISPGSR--VLEAGTGSGALTAYLARAVGPEGHVTTYEIR-----EDFAKTARENLSEFGLGDRVTLKLGDVREGID--E 161 (256)
T ss_pred CCCCCCE--EEEcccCchHHHHHHHHhhCCCceEEEEEec-----HHHHHHHHHHHHHhccccceEEEecccccccc--c
Confidence 4777876 99999999999999983 3 34443332 234444332 2 6633 222 5554333 2
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCC
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRW 599 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w 599 (629)
..||.|-. +--+--.+|--++.+|+|||.+++--+ .+.+.++-..++..+|
T Consensus 162 ~~vDav~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 162 EDVDAVFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred cccCEEEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 37887665 333344589999999999999988543 4445555444555555
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.8 Score=50.44 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC-eEEEEecCCCCC---CCCCCeeEEE
Q 006834 220 GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP-AMIGVISSKRLP---YPARAFDMAH 291 (629)
Q Consensus 220 ~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~-~~~~v~d~~~Lp---~pd~sFDlV~ 291 (629)
+..+.+|||+.+..|.=+.+++..-...-.|.+.|.+..-+....++ |.. ......|...+| ++. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 44455999999999977777666432222467779888877766543 543 444556666555 444 899999
Q ss_pred ----ecC--ccc-----cccc----------CHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 292 ----CSG--CLI-----PWYM----------YDGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 292 ----~s~--~L~-----h~~~----------d~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
|+. ++. -+.. -+.++|.....++++||+|+.++..+.
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 444 221 0000 123678889999999999999976543
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.6 Score=42.83 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=89.2
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhh--hhCCCeEEEEecCCCCC-CCch-HHHHhhcc--cc
Q 006834 454 LREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAA--MSKYPVWVMNVVPFHSN-PDTL-GAIYERGL--IG 527 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~--l~~~~v~~mnv~~~~~~-~~~l-~~~~ergl--i~ 527 (629)
..+..+.|.+|+-.-..+.+.+... -.+++|+|+|-|-=|-= +...++- .-++..... .+.| .++.|=|| +.
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~ 120 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVE 120 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeE
Confidence 3455789999986655554433321 35699999997733333 3333332 233333222 1222 23445566 45
Q ss_pred eeccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE---EeCHHHHHHHHHHHhcCCCeEEEe
Q 006834 528 TYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF---RDTVEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 528 ~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~---~d~~~~~~~~~~~~~~l~w~~~~~ 604 (629)
++|.--|.|..=++-||+|=| .+-+++..++-=.-.+|++||.++. .--.+.+..+++....+.+....+
T Consensus 121 i~~~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 121 IVHGRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred EehhhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 666444444431111999887 2224555555555799999998753 344567788888888888888755
Q ss_pred ecCCCCC-CCceEEEE
Q 006834 605 DHESGPF-NPEKILFA 619 (629)
Q Consensus 605 ~~e~~~~-~~e~~l~~ 619 (629)
..-.-|. ..++.|+.
T Consensus 194 ~~~~~p~~~~~r~l~i 209 (215)
T COG0357 194 FSLTVPELDGERHLVI 209 (215)
T ss_pred EEeecCCCCCceEEEE
Confidence 4333332 23455554
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.37 Score=48.20 Aligned_cols=97 Identities=7% Similarity=0.024 Sum_probs=52.9
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCCcccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
+|||++||+|.++..++.+.. -.|+.++..+..+..+.+ -|+ +.+++ |+.+.+......||+|=++-=|-
T Consensus 56 ~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~- 132 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR- 132 (199)
T ss_pred EEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC-
Confidence 699999999999975544432 234444544344443322 122 23333 33332222224699887654432
Q ss_pred cCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006834 555 YQDRCDITNILLEMD--RILRPEGTVIFRDTV 584 (629)
Q Consensus 555 ~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 584 (629)
. ...+.++.-+. .+|.|+|.+++....
T Consensus 133 --~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 --K-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred --C-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 12333443333 468999999998554
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.35 Score=51.00 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=71.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecCCCC--CCCCCCeeEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISSKRL--PYPARAFDMA 290 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~~~L--p~pd~sFDlV 290 (629)
.+++||=||-|.|.+.+....+ ..+-.+.-.|+.+..++..++- +..+.+..+|...+ ....+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4568999999999998888877 3333556678888888887752 35577777765433 2447899999
Q ss_pred EecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
+.-..= +..+. ...++..+.+.||+||+++..+
T Consensus 200 i~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 962211 11111 2458889999999999999985
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.69 Score=46.95 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=61.5
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC----CCCCCCeeEEEecC
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL----PYPARAFDMAHCSG 294 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L----p~pd~sFDlV~~s~ 294 (629)
.|+|.-||.|..+...+.++..+++| |+++.-+..|+++ |+ .+.|.++|...+ .+....+|+|+.+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~~VisI---diDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGPYVIAI---DIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCCeEEEE---eccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 79999999999999999999877666 9999999999876 33 478888886443 34334466777655
Q ss_pred cccccccCHHHHHHHHHhcccCCcE
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGY 319 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~ 319 (629)
.. ..+.....-+..+...+.|.|.
T Consensus 174 pw-ggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 PW-GGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CC-CCcchhhhhhhhhhhhcchhHH
Confidence 32 1111223344455555555543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.36 E-value=3.1 Score=43.69 Aligned_cols=159 Identities=13% Similarity=0.191 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC--C--eEEEEecCCCCC--CCchHHHHhhcccceec
Q 006834 457 DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY--P--VWVMNVVPFHSN--PDTLGAIYERGLIGTYQ 530 (629)
Q Consensus 457 d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~--v~~mnv~~~~~~--~~~l~~~~ergli~~~~ 530 (629)
.|+.|...|-.-.+-.. ...+. .++|+|||.|.-+-.|... + |++.-+.+.--. ..+.+..--.|-|++.|
T Consensus 129 ETEE~V~~Vid~~~~~~-~~~~~--~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSE-HSKHT--HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred cHHHHHHHHHHHHhhhh-hcccc--eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 46778887754333222 22233 5999999999888887653 2 333333332211 11223333345588887
Q ss_pred c-c-cccCCCCC---cccceeeccc--ccc-----------ccCC--------CcC--HHHHHHHHhhcccCCcEEEEEe
Q 006834 531 D-W-CEAFSTYP---RTYDLIHASG--VFS-----------IYQD--------RCD--ITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 531 ~-~-~e~f~~yp---~t~Dl~H~~~--~fs-----------~~~~--------~c~--~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. . .+.+.++| ..+|+|-++- +++ .|.+ .|. +-.++.=.-|.|+|||+++|.-
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 4 2 25777887 8899876642 222 1111 111 1125555679999999999962
Q ss_pred C-----HHHHH-HHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 583 T-----VEMLV-KIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 583 ~-----~~~~~-~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
. ...+. -|....+.-.|.+.++..- .+.+++++..+
T Consensus 286 ~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df---~~~~Rfv~i~r 327 (328)
T KOG2904|consen 286 VERKEHSYLVRIWMISLKDDSNGKAAVVSDF---AGRPRFVIIHR 327 (328)
T ss_pred cccccCcHHHHHHHHhchhhccchhheeecc---cCCcceEEEEe
Confidence 2 12222 2333355555666554322 24566666544
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.3 Score=51.21 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=65.2
Q ss_pred chhhH-HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccc
Q 006834 454 LREDN-ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDW 532 (629)
Q Consensus 454 f~~d~-~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~ 532 (629)
|.+|. ..|.+ |..+ +.....+.+ ++|.|||.| .++...|. .-+++-|....-++....-|--.+ -.
T Consensus 25 fs~tr~~~Wp~-v~qf---l~~~~~gsv--~~d~gCGng---ky~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~--~~ 91 (293)
T KOG1331|consen 25 FSATRAAPWPM-VRQF---LDSQPTGSV--GLDVGCGNG---KYLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNV--CR 91 (293)
T ss_pred ccccccCccHH-HHHH---HhccCCcce--eeecccCCc---ccCcCCCc--ceeeecchhhhhccccccCCCcee--eh
Confidence 55555 56664 3333 333445776 999999987 34444441 112222322111111111111011 11
Q ss_pred cccCC-CCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 533 CEAFS-TYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 533 ~e~f~-~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
|.+.. +++ .+||..-...+.+.+..++....+|.|+-|+|||||...+.
T Consensus 92 ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 92 ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 22222 233 78998766666666778889999999999999999996664
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.53 Score=48.12 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=59.4
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh-hccc--------------ceeccccccCCCCC------
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE-RGLI--------------GTYQDWCEAFSTYP------ 540 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e-rgli--------------~~~~~~~e~f~~yp------ 540 (629)
.||+.|||-|-=+.+|++.+. .|+.+|-++.-+...++ .|+- +.+.-+|..|-..+
T Consensus 46 rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred eEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 599999999999999999976 34555555344444333 2221 01222345555553
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
..||+|-=-+.|-.. +.-.......-|-++|||||.+++
T Consensus 123 ~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 123 PVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred CCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 357875433334333 223456799999999999998877
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.49 Score=47.68 Aligned_cols=100 Identities=19% Similarity=0.322 Sum_probs=58.5
Q ss_pred HHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh-----cc--cceeccccccC
Q 006834 464 RMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER-----GL--IGTYQDWCEAF 536 (629)
Q Consensus 464 ~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er-----gl--i~~~~~~~e~f 536 (629)
.|..+..++. +.++. .||++|||.|=-||-|++.- -.|.-++.- .+|.-...+ |+ +.+.| ....
T Consensus 60 ~vA~m~~~L~-~~~g~--~VLEIGtGsGY~aAvla~l~---~~V~siEr~-~~L~~~A~~~L~~lg~~nV~v~~--gDG~ 130 (209)
T COG2518 60 MVARMLQLLE-LKPGD--RVLEIGTGSGYQAAVLARLV---GRVVSIERI-EELAEQARRNLETLGYENVTVRH--GDGS 130 (209)
T ss_pred HHHHHHHHhC-CCCCC--eEEEECCCchHHHHHHHHHh---CeEEEEEEc-HHHHHHHHHHHHHcCCCceEEEE--CCcc
Confidence 3555555554 56664 59999999996666665541 133333433 344444433 33 22333 2455
Q ss_pred CCCC--cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 537 STYP--RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 537 ~~yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.-|| .-||.|+..+-+ -.++.-|+| -|+|||.+|+=
T Consensus 131 ~G~~~~aPyD~I~Vtaaa------~~vP~~Ll~---QL~~gGrlv~P 168 (209)
T COG2518 131 KGWPEEAPYDRIIVTAAA------PEVPEALLD---QLKPGGRLVIP 168 (209)
T ss_pred cCCCCCCCcCEEEEeecc------CCCCHHHHH---hcccCCEEEEE
Confidence 5677 689998863222 234455554 69999999984
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.54 Score=48.71 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=64.4
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC----C-CeEEEEecCCCCCCCchHHH----Hhhcc---cceec-ccc-ccCC-C
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK----Y-PVWVMNVVPFHSNPDTLGAI----YERGL---IGTYQ-DWC-EAFS-T 538 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~----~ergl---i~~~~-~~~-e~f~-~ 538 (629)
.|.+|.. |++.|.|.|++..+|+. . .|+..-+ ++.....+ .+.|| +.+.| |.| +.|. .
T Consensus 37 ~i~pG~~--VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~-----~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 37 DIRPGSR--VLEAGTGSGSLTHALARAVGPTGHVYTYEF-----REDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp T--TT-E--EEEE--TTSHHHHHHHHHHTTTSEEEEEES-----SHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred CCCCCCE--EEEecCCcHHHHHHHHHHhCCCeEEEcccc-----CHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4888986 99999999999999974 2 2444332 22333332 33455 45666 999 5673 2
Q ss_pred CCcccceeeccccccccCCCcCHHHHHHHHhhcc-cCCcEEEEE-eCHHHHHHHHHHHhcCCCeE
Q 006834 539 YPRTYDLIHASGVFSIYQDRCDITNILLEMDRIL-RPEGTVIFR-DTVEMLVKIRSITEGMRWKS 601 (629)
Q Consensus 539 yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiL-rPgG~~i~~-d~~~~~~~~~~~~~~l~w~~ 601 (629)
....+|.+-. +-=+--..+--+-++| ||||.+..= -..+.+.++-..++...|.-
T Consensus 110 ~~~~~DavfL--------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFL--------DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEE--------ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEE--------eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3477887665 1112223778889999 999998774 44555555555555566654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=89.71 E-value=2.3 Score=46.25 Aligned_cols=98 Identities=18% Similarity=0.059 Sum_probs=63.0
Q ss_pred CeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCC-----C-CC-CCCCeeEEEecC
Q 006834 224 RTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR-----L-PY-PARAFDMAHCSG 294 (629)
Q Consensus 224 ~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~-----L-p~-pd~sFDlV~~s~ 294 (629)
.+||.+|||. |..+..+++. +.. .++.+|.+++.++.+++.+. +.+....... + .+ ....+|+|+..-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~--~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAE--RVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 4899999987 8888888775 332 35667999999999988732 2222111110 1 12 234699998632
Q ss_pred cc-------cc-------cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 295 CL-------IP-------WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L-------~h-------~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.- ++ -..+....+.++.+.|+|+|.+++.+
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 11 01 11234568899999999999999885
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.5 Score=46.93 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=44.8
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
-+.+.+.+.+...++. .++|.=+|.|..+..+++.... ..++++|.++.+++.|+++
T Consensus 7 Vll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred hhHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 3466666666655544 8999999999999999987433 4577889999999999876
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.81 Score=46.78 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=57.7
Q ss_pred CchHHHHHHHHhhcCcc----CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CC----CeE
Q 006834 203 NGADAYIDNINELIPLT----GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GV----PAM 271 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~----~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~----~~~ 271 (629)
.|+..|++.|.++|... +++..++||||.|.-.+--.+--+. -+..++|.|+++..++.|+.. ++ .+.
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~ 133 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLERAIR 133 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhhhee
Confidence 45677888888888653 3345689999998764322221111 134678889999999998743 21 122
Q ss_pred EEEe-cCCCC-C---CCCCCeeEEEecCccc
Q 006834 272 IGVI-SSKRL-P---YPARAFDMAHCSGCLI 297 (629)
Q Consensus 272 ~~v~-d~~~L-p---~pd~sFDlV~~s~~L~ 297 (629)
+..- +...+ + -..+.||++.|+.-+|
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred EEeccCccccccccccccceeeeEecCCCcc
Confidence 2221 11111 1 1257899999999774
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=89.28 E-value=2.5 Score=39.58 Aligned_cols=69 Identities=16% Similarity=-0.006 Sum_probs=46.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEE--EecCCCCCCCCCCeeEEEe
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIG--VISSKRLPYPARAFDMAHC 292 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~--v~d~~~Lp~pd~sFDlV~~ 292 (629)
.+++|+|||.+.|..+.+++-+|.. .+.+++.++...+..++.-....+. ......++-.-+.||+...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 3569999999999999999999876 4567799999999998742111111 1112234433456887763
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=88.82 E-value=1.3 Score=45.02 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=84.2
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC----C-CeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCccccee-
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK----Y-PVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLI- 546 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~- 546 (629)
.|.+|+- ||-+||..|....++.+ . .|+++..+|.-.. +.+.++-.|-- |.++.| .++|..|-++
T Consensus 70 ~ik~gsk--VLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv 141 (229)
T PF01269_consen 70 PIKPGSK--VLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRPNIIPILED-----ARHPEKYRMLV 141 (229)
T ss_dssp S--TT-E--EEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHSTTEEEEES------TTSGGGGTTTS
T ss_pred CCCCCCE--EEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCCceeeeecc-----CCChHHhhccc
Confidence 4566654 99999999999999864 3 4689999988775 77788888765 777765 3355444322
Q ss_pred -eccccccccCCCcCHHHHHHHHhhcccCCcEEEEE----------eCHHHHHHHHHHHhcCCCeE-EEeecCCCCCCCc
Q 006834 547 -HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR----------DTVEMLVKIRSITEGMRWKS-QIMDHESGPFNPE 614 (629)
Q Consensus 547 -H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~----------d~~~~~~~~~~~~~~l~w~~-~~~~~e~~~~~~e 614 (629)
..+-+|..-...-..+-+++-+..-||+||+++|. ++.++...-.+.++.-..+. ...+.| |+.+.
T Consensus 142 ~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~d 219 (229)
T PF01269_consen 142 EMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYERD 219 (229)
T ss_dssp --EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTSTT
T ss_pred ccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCCC
Confidence 23334443334445556888889999999999996 22333333333344434444 344555 56666
Q ss_pred eEEEEE
Q 006834 615 KILFAA 620 (629)
Q Consensus 615 ~~l~~~ 620 (629)
-++|.-
T Consensus 220 H~~vv~ 225 (229)
T PF01269_consen 220 HAMVVG 225 (229)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 666543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=88.71 E-value=0.53 Score=47.76 Aligned_cols=120 Identities=15% Similarity=0.238 Sum_probs=76.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH-hhcc------cce--------eccccccCCCCC----c
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY-ERGL------IGT--------YQDWCEAFSTYP----R 541 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~-ergl------i~~--------~~~~~e~f~~yp----~ 541 (629)
..||+-|||.|--+.+|++++. +|+.+|-++.-++..+ ++++ ++. +.-+|..|-.++ .
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 3599999999999999999985 6677777655555553 4554 111 122455565554 3
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE-E-e--------CH-H-HHHHHHHHHhcCCCeEEEee
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF-R-D--------TV-E-MLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~-d--------~~-~-~~~~~~~~~~~l~w~~~~~~ 605 (629)
.||+|-=-+.|-.. +....+....-|.++|+|||.+++ + + +. . ....|++++. -.|++....
T Consensus 116 ~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 116 KFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 58887644444333 234668899999999999999433 2 1 01 1 2567788877 777876544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.18 Score=45.73 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=28.0
Q ss_pred CeeEEEecCcc--cccccC---HHHHHHHHHhcccCCcEEEEEe
Q 006834 286 AFDMAHCSGCL--IPWYMY---DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 286 sFDlV~~s~~L--~h~~~d---~~~~L~el~RvLKPGG~liis~ 324 (629)
.||+|+|..+. +|+..- ...+++.+.+.|+|||+|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999996654 343311 2359999999999999999983
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.08 E-value=3.5 Score=42.75 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=57.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHH--HHHHHc--------CCCeEEEEecCCCCC---CCCCC-ee
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQV--QFALER--------GVPAMIGVISSKRLP---YPARA-FD 288 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i--~~A~er--------g~~~~~~v~d~~~Lp---~pd~s-FD 288 (629)
..+||++|.|+|-.+...+..... .+.-.|...... +..++. |..+.....+-...+ +-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~--~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGA--EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcc--eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 447999999999766666654322 122235443322 222211 223333333221111 11122 99
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+|+++.|+.+-. ..+.++.-+...|-.+|.+++..
T Consensus 165 lilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEE
Confidence 999999995544 67788888999999999777764
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=88.05 E-value=3.2 Score=43.35 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=59.3
Q ss_pred CeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC-----CCCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL-----PYPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L-----p~pd~sFDlV~~s~~L 296 (629)
.+||..|+| .|..+..+++. |.. ++.++.+++..+.+++.+....+...+ ... ....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~---V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAA---VIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCE---EEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC-
Confidence 378888876 47777777764 443 455688999999987776533221111 000 123467999885321
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....+.++.+.|+++|.++..+
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEC
Confidence 1357888999999999999875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=87.67 E-value=2.3 Score=46.83 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=65.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC---eEEEEecCCCCC-CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP---AMIGVISSKRLP-YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~---~~~~v~d~~~Lp-~pd~sFDlV~~s~ 294 (629)
..+|||.=+|+|.=+...+.....+..++..|+++++++..+++ +.. +.+...|+..+- ...+.||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 34899999999977777766532344678889999999998865 332 456666665543 24678999973
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.++- .+..+|..+.+.+|.||+|.++..
T Consensus 128 --DPfG-Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 128 --DPFG-SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----SS---HHHHHHHHHHEEEEEEEEEEE-
T ss_pred --CCCC-CccHhHHHHHHHhhcCCEEEEecc
Confidence 2333 567899999999999999999864
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.2 Score=44.81 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHH
Q 006834 562 TNILLEMDRILRPEGTVIF-RDTVEMLVKIRSIT 594 (629)
Q Consensus 562 ~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~ 594 (629)
..+|.|.--+||+||.++. +|-.+...-+.+.+
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~ 196 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDVKELHEWMVKHL 196 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHH
Confidence 3588999999999999876 45544444444433
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=6.2 Score=42.89 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCC--Ccccceeecccccc
Q 006834 476 HKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTY--PRTYDLIHASGVFS 553 (629)
Q Consensus 476 ~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~y--p~t~Dl~H~~~~fs 553 (629)
..|. +|||+||..|||.-.|.+++. .|+.+|.. .+-+.+.+-+-+-.+.. ..|..- ++.+|++-|+-+
T Consensus 210 ~~g~--~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGM--RAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCC--EEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEecc--
Confidence 4454 599999999999999999986 55666654 45555666665444431 233333 477899987332
Q ss_pred ccCCCcCHHHHHHHHhhcccCC--cEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPE--GTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPg--G~~i~~ 581 (629)
|.-..++.=|-++|.-| ..+|++
T Consensus 280 -----e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 -----EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -----cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 44445777778888776 578886
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.36 E-value=0.38 Score=50.26 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=32.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER 523 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er 523 (629)
.+|||+|||+|.++.+|+++.- .|+.+|..+.+++.+.++
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAET 83 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHh
Confidence 4699999999999999998743 556666666788888765
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.59 Score=48.15 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=29.7
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER 523 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er 523 (629)
.-.+|||+|||+|.+.+.|+++.- .|+.+|..+.+++.+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKL 70 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHH
Confidence 345799999999999999988743 244445554666666544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.12 E-value=0.48 Score=48.28 Aligned_cols=97 Identities=19% Similarity=0.321 Sum_probs=65.4
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh---cccceeccccccCCCCC-cccceeecccccc-
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER---GLIGTYQDWCEAFSTYP-RTYDLIHASGVFS- 553 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er---gli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs- 553 (629)
..-+++|+||+.|-.+.+|...+| --+.-.|.+-.+++-..+- +++-.|-.--|-|..|- +++|||-++ +|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS--lsl 147 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS--LSL 147 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhh--hhh
Confidence 345699999999999999999987 2223334444566666554 55555554446676676 999996541 11
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.|. -+++.-|...--+|+|.|.||-+
T Consensus 148 HW~--NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 HWT--NDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhh--ccCchHHHHHHHhcCCCccchhH
Confidence 122 23566778888899999999864
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=0.69 Score=47.91 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=40.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceeccccccCCCCC-cccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQDWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~~~~e~f~~yp-~t~Dl~H~~ 549 (629)
.+|||+|||+|.+...|+++.. .|+.+|..+.+++.+.++- -+.+++ +.+..+| ..||.|-++
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~---~D~~~~~~~~~d~Vv~N 98 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIE---GDALKVDLPEFNKVVSN 98 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEE---eccccCCchhceEEEEc
Confidence 5699999999999999998743 3455555556777766542 133333 3333333 346776553
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.91 E-value=0.82 Score=48.82 Aligned_cols=62 Identities=18% Similarity=0.298 Sum_probs=37.8
Q ss_pred cccceeecccccc-ccCCCcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCCeEEE
Q 006834 541 RTYDLIHASGVFS-IYQDRCDITNILLEMDRILRPEGTVIFRD--TVEMLVKIRSITEGMRWKSQI 603 (629)
Q Consensus 541 ~t~Dl~H~~~~fs-~~~~~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~l~w~~~~ 603 (629)
..||++-|--.|- .+..--...-.|.-+-+.|||||+||=|- ...++.+|+.. ...+|.-.+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~gNdi 259 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFGNDI 259 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhccee
Confidence 3499977633321 11111222347788999999999999984 44467777765 444554433
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=86.78 E-value=0.42 Score=46.26 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=35.4
Q ss_pred CCCeeEEEecCccccccc-------C---HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 284 ARAFDMAHCSGCLIPWYM-------Y---DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~-------d---~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
.++||.+.|..+++|.-- + ....+.++.++|||||.|++..|-.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 578999999888877641 1 2368999999999999999998843
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=86.52 E-value=1.8 Score=45.43 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=50.0
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCC--CCCeeEEEecC
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYP--ARAFDMAHCSG 294 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~p--d~sFDlV~~s~ 294 (629)
+|+|+-||.|.+...+.+.|... +.++|+++.+++..+.+.... +...|...+... ...+|+++.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~--v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEI--VAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEE--EEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCC
Confidence 69999999999999998888653 467899999999887775433 444566555422 35699999744
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.43 E-value=2.7 Score=43.54 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=56.9
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH---Hc-------C----CCeEEEEe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL---ER-------G----VPAMIGVI 275 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~---er-------g----~~~~~~v~ 275 (629)
+.|.+.+..+.+..-+|||.-+|.|..+..++.+|..+ +.+|-++......+ ++ + .++.+...
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V---~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEE---EEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 45666666655544489999999999999999998864 55598887766554 22 1 12444445
Q ss_pred cCCCC-CCCCCCeeEEEecCcccc
Q 006834 276 SSKRL-PYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 276 d~~~L-p~pd~sFDlV~~s~~L~h 298 (629)
|...+ .-...+||+|+.-..+.|
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCC
Confidence 54322 212347999998776644
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.23 E-value=0.59 Score=49.01 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=62.9
Q ss_pred hHHHHHHHHhhc-CccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH------------HcCCCeE
Q 006834 205 ADAYIDNINELI-PLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL------------ERGVPAM 271 (629)
Q Consensus 205 a~~~i~~I~~lL-~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~------------erg~~~~ 271 (629)
+-...+.+.+-+ ....-++++|||+|||.|.-+......+. ..+...|.+.+.++.-. +......
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~ 175 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK 175 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhccc
Confidence 344445555333 11122355999999999988887777663 23344466666553211 1000000
Q ss_pred EEEecCC---CCCC-CCC--CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 272 IGVISSK---RLPY-PAR--AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 272 ~~v~d~~---~Lp~-pd~--sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...... .+-+ ..+ .||+|.++..+.........++......+++.|.+++++
T Consensus 176 ~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 176 VDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 1000001 1111 112 789998888775444223333667778889999998874
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.37 E-value=14 Score=37.44 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=70.1
Q ss_pred chHHHHHHHHhhcC---ccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHH----HHHHHcCCCeEEEEec
Q 006834 204 GADAYIDNINELIP---LTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQV----QFALERGVPAMIGVIS 276 (629)
Q Consensus 204 ga~~~i~~I~~lL~---~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i----~~A~erg~~~~~~v~d 276 (629)
....+...|..-+. ...++ +||=+|+.+|+....++.--..+ .+++++.|+... ..|.+|. ++.-...|
T Consensus 57 ~RSKLaAaIl~Gl~~~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G-~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~D 132 (231)
T COG1889 57 RRSKLAAAILKGLKNFPIKEGS--KVLYLGAASGTTVSHVSDIVGEG-RIYAVEFSPRPMRELLDVAEKRP-NIIPILED 132 (231)
T ss_pred chhHHHHHHHcCcccCCcCCCC--EEEEeeccCCCcHhHHHhccCCC-cEEEEEecchhHHHHHHHHHhCC-Cceeeecc
Confidence 34555555555444 33444 99999999999888887753222 356778887654 4555553 33333444
Q ss_pred CCCCC----CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRLP----YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~Lp----~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+.. | .-=+..|+|++--. -+.+.+.+..++..-||+||+++++.
T Consensus 133 A~~-P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 133 ARK-PEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cCC-cHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 432 2 11246899886221 12123458889999999999888874
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=85.04 E-value=4.8 Score=44.10 Aligned_cols=108 Identities=14% Similarity=0.208 Sum_probs=62.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC-CCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST-YPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~-yp~t~Dl~H~~~~f 552 (629)
++|||++||+|.|+..|+.+.- .|+.+|..+..+..+.+. |+ +-.+. |. +.+.. .-..||+|-.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEEC---
Confidence 4699999999999999987642 456666655566555432 22 22222 11 11111 11348887663
Q ss_pred cccCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCeEE
Q 006834 553 SIYQDRCDI-TNILLEMDRILRPEGTVIFRDTVE-MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 553 s~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~l~w~~~ 602 (629)
..|..+ +.++..+. -|+|++.++++-+.. ....++.+ . .|+++
T Consensus 308 ---PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L-~--gy~l~ 352 (374)
T TIGR02085 308 ---PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL-S--GYQIE 352 (374)
T ss_pred ---CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh-c--CceEE
Confidence 223332 33444443 379999999986655 45556655 3 46654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=3.9 Score=43.61 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=58.9
Q ss_pred CCeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEe--cCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVI--SSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~--d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+||=+||| .|.++..+++. |.. .++.+|.+++.++.+++.|....+... +..++....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAA--EIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--EEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 3488888876 45666666654 442 245569999999999988754322111 11111111235899885321
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
....+....++|++||.+++.+.
T Consensus 245 ----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12467788899999999999863
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.74 E-value=8.1 Score=39.85 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=74.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCC----cccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYP----RTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp----~t~Dl~H~~~~fs~~ 555 (629)
|++||+||-+|||--.|.+++. --|..+|-..++|.-=+.... +-++ .-+-...--| .-.|++-|+--|-
T Consensus 81 kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~-E~tN~r~l~~~~~~~~~d~~v~DvSFI-- 155 (245)
T COG1189 81 KVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVL-ERTNVRYLTPEDFTEKPDLIVIDVSFI-- 155 (245)
T ss_pred CEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEE-ecCChhhCCHHHcccCCCeEEEEeehh--
Confidence 4599999999999999988854 112222222233333322222 1111 0000000111 2346666544332
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEE-------------------eC---HHHHHHHHHHHhcCCCeEEEeec--CCCCC
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFR-------------------DT---VEMLVKIRSITEGMRWKSQIMDH--ESGPF 611 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~-------------------d~---~~~~~~~~~~~~~l~w~~~~~~~--e~~~~ 611 (629)
++.-+|-.+..+|.|+|.++.- |+ ..++.++.+.+..+.|.+.-... =.|+.
T Consensus 156 ----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~ 231 (245)
T COG1189 156 ----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGK 231 (245)
T ss_pred ----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCC
Confidence 3456899999999999998874 33 34688899999999999863321 12322
Q ss_pred -CCceEEEEEe
Q 006834 612 -NPEKILFAAK 621 (629)
Q Consensus 612 -~~e~~l~~~K 621 (629)
+-|-++..+|
T Consensus 232 GNiE~l~~~~k 242 (245)
T COG1189 232 GNIEFLLLLKK 242 (245)
T ss_pred CcEeeeeeeec
Confidence 3355555554
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=84.62 E-value=1.7 Score=42.86 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=36.0
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE 265 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e 265 (629)
.+++.+.++.. ..+..|||.-||+|+.+....+.|-.. .|+|+++..++.|.+
T Consensus 179 ~l~~~lI~~~t---~~gdiVlDpF~GSGTT~~aa~~l~R~~---ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAST---NPGDIVLDPFAGSGTTAVAAEELGRRY---IGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS----TT-EEEETT-TTTHHHHHHHHTT-EE---EEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhh---ccceeeehhhhccChHHHHHHHcCCeE---EEEeCCHHHHHHhcC
Confidence 33444444432 234489999999999988888887654 455999999999864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=84.45 E-value=8.4 Score=37.45 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=59.6
Q ss_pred eCCCCchHHHHHHHcCC--cEeEEEeecCcHHHHHHH----------HHcCCCeEEEEecCCCCC----CCCCCeeEEEe
Q 006834 229 TGCGVASWGAYLLKRDI--LTMSFARRDTHEAQVQFA----------LERGVPAMIGVISSKRLP----YPARAFDMAHC 292 (629)
Q Consensus 229 IGCGtG~~a~~La~~g~--~~v~i~gvDiS~~~i~~A----------~erg~~~~~~v~d~~~Lp----~pd~sFDlV~~ 292 (629)
||=|.=+|+..|++... ..+-.+..|..++..+.. ++.|..+.+. .|+.++. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 56677788888887632 222234456655444432 2345545443 3555553 35689999998
Q ss_pred cCccccccc-----C-------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 293 SGCLIPWYM-----Y-------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 293 s~~L~h~~~-----d-------~~~~L~el~RvLKPGG~liis~P 325 (629)
++-...... + ...++..+.++|+++|.+.++..
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 776543110 1 12588999999999999999853
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=84.21 E-value=0.65 Score=46.78 Aligned_cols=100 Identities=11% Similarity=-0.104 Sum_probs=50.7
Q ss_pred CCeEEEeCCCCchHHHHHHHc---CCcEeEEEeecCcHHHHHH-HHHc---CCCeEEEEecCCCCC----C----CCCCe
Q 006834 223 IRTAVDTGCGVASWGAYLLKR---DILTMSFARRDTHEAQVQF-ALER---GVPAMIGVISSKRLP----Y----PARAF 287 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~---g~~~v~i~gvDiS~~~i~~-A~er---g~~~~~~v~d~~~Lp----~----pd~sF 287 (629)
+.+|+|+|.-.|.-+.++++. ......+.++|+.-..... |.+. ...+.+.++|..... . ....-
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 448999999998777666542 2122356677985433322 2222 256888888765431 1 12234
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+|+--. +|-..+....|+....+|+||+|+++..
T Consensus 113 vlVilDs--~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDS--SHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECC--CccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 4555322 2444456677888999999999999964
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.01 E-value=2 Score=46.76 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=52.5
Q ss_pred EeecCCeeeecCCCCCCCCchHHHHHHHHhhcCccCC-CCCeEEEeCCCCchHHHHHHHcC-------CcEeEEEeecCc
Q 006834 185 IQVEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGG-NIRTAVDTGCGVASWGAYLLKRD-------ILTMSFARRDTH 256 (629)
Q Consensus 185 v~~~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g-~~~~VLDIGCGtG~~a~~La~~g-------~~~v~i~gvDiS 256 (629)
+-..|+.+.-|.-+.+| .+.....+.+++..... .+..++|+|.|.|.++..|+... ....++.-+++|
T Consensus 42 ~G~~GDFiTApels~lF---Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 42 IGRKGDFITAPELSQLF---GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred ccccCCeeechhHHHHH---HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 34456766666655566 23334444444443322 24579999999999999888742 235677888999
Q ss_pred HHHHHHHHHc
Q 006834 257 EAQVQFALER 266 (629)
Q Consensus 257 ~~~i~~A~er 266 (629)
++..+.-++.
T Consensus 119 ~~L~~~Qk~~ 128 (370)
T COG1565 119 PELRARQKET 128 (370)
T ss_pred HHHHHHHHHH
Confidence 9998877765
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=83.68 E-value=10 Score=41.70 Aligned_cols=100 Identities=18% Similarity=0.089 Sum_probs=65.2
Q ss_pred CeEEEeCCCCc----hHHHHHHHc--CCcEeEEEeecC----cHHHHHHHH--------HcCCCeEEEEec---CCC---
Q 006834 224 RTAVDTGCGVA----SWGAYLLKR--DILTMSFARRDT----HEAQVQFAL--------ERGVPAMIGVIS---SKR--- 279 (629)
Q Consensus 224 ~~VLDIGCGtG----~~a~~La~~--g~~~v~i~gvDi----S~~~i~~A~--------erg~~~~~~v~d---~~~--- 279 (629)
-.|+|+|.|.| .+...|+.+ ++..+.|++++. +...++.+. ..|++..|...- .+.
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 37999999999 445555554 456788999998 665555444 447888876632 222
Q ss_pred --CCCCCCCeeEEEecCcccccccC------HHHHHHHHHhcccCCcEEEEE
Q 006834 280 --LPYPARAFDMAHCSGCLIPWYMY------DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 280 --Lp~pd~sFDlV~~s~~L~h~~~d------~~~~L~el~RvLKPGG~liis 323 (629)
+...++..=+|.|.+.|+|...+ +...+....|-|+|.-..++.
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 22334556666788888887632 344566777889999555554
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.09 E-value=7.3 Score=38.88 Aligned_cols=94 Identities=19% Similarity=0.098 Sum_probs=52.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHcCCCeEEEEe-cCCC--------CCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALERGVPAMIGVI-SSKR--------LPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~-d~~~--------Lp~pd~sFDlV~~ 292 (629)
..+|||+||..|+|+.-..++- +.+ -+.|+|+-. ..--.| +.+..+ |... -.+|+...|+|++
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g-~v~gVDllh----~~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNG-MVLGVDLLH----IEPPEG--ATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCc-eEEEEeeee----ccCCCC--cccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 3499999999999998888763 433 345667631 100112 222222 2211 0246788999997
Q ss_pred cCccccccc----CHH-------HHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLIPWYM----YDG-------LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~h~~~----d~~-------~~L~el~RvLKPGG~liis~ 324 (629)
-..- .-.. |.. .++.-....++|+|.|+.-.
T Consensus 143 DMap-naTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 143 DMAP-NATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred ccCC-CCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 3322 1110 111 23444456678999999863
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=82.90 E-value=0.4 Score=42.21 Aligned_cols=95 Identities=21% Similarity=0.261 Sum_probs=33.0
Q ss_pred EeecccchhHHhhhhCC----C-eEEEEecCCCCCCCchHHHHhhcccceecccc----ccCCCCC-cccceeecccccc
Q 006834 484 MDMNAYLGGFAAAMSKY----P-VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWC----EAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 484 lD~~~g~Ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~----e~f~~yp-~t~Dl~H~~~~fs 553 (629)
|.+|+..|..+..|++. + ..+..|-+-...+....++.+.|+-..++-.+ +.++.++ +.||++|.++-=+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 46788888877776542 2 12333433332213444444456633333222 2344566 8999999854211
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
......-|..+-+.|+|||.+++-|
T Consensus 81 ----~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 81 ----YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1223445666778899999999865
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.20 E-value=7.8 Score=42.27 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=64.5
Q ss_pred cCCCCCeEEEeCCCCchHHHHHHHcCCcE---eEEEeecCcHHHHHHHH---HcCC--CeEEEEecCCCCC---------
Q 006834 219 TGGNIRTAVDTGCGVASWGAYLLKRDILT---MSFARRDTHEAQVQFAL---ERGV--PAMIGVISSKRLP--------- 281 (629)
Q Consensus 219 ~~g~~~~VLDIGCGtG~~a~~La~~g~~~---v~i~gvDiS~~~i~~A~---erg~--~~~~~v~d~~~Lp--------- 281 (629)
.++. +|||+.+..|+=++.|++..... --+++-|.+..-+.... .+-. ...+...+....|
T Consensus 154 ~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 4445 99999999999999988864321 12456688876554443 2321 2222222222222
Q ss_pred CCCCCeeEEEe-----cCcc-cc--------cccC--------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 282 YPARAFDMAHC-----SGCL-IP--------WYMY--------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 282 ~pd~sFDlV~~-----s~~L-~h--------~~~d--------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
.....||-|+| .... .+ |... .-.+|..-.++||+||.++.++-..+
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 23457999997 1111 00 1111 12578889999999999999986544
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.63 E-value=2.8 Score=44.01 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=40.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
.+.+..++......+..|||--||+|+.+....+.+-.. .|+|++++.++.|++|
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~---IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKF---IGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCE---EEEeCCHHHHHHHHHH
Confidence 334444444333334489999999999888877777654 4559999999999988
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=81.56 E-value=1.5 Score=44.84 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=57.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEe--------EEEeecCcHHHHHHHHHcCCCeEEEEecCCCC--------CCCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTM--------SFARRDTHEAQVQFALERGVPAMIGVISSKRL--------PYPARA 286 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v--------~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L--------p~pd~s 286 (629)
..+|+|+.+..|+|+..|.++-.... .|+++|+.+-+ --..+.-.++|+... -|..+.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------PI~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------PIEGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------ccCceEEeecccCCHhHHHHHHHHhCCCC
Confidence 45899999999999999987632200 15555664210 001234445555432 145568
Q ss_pred eeEEEecC-----cccccccCHH-----HHHHHHHhcccCCcEEEEE
Q 006834 287 FDMAHCSG-----CLIPWYMYDG-----LYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 287 FDlV~~s~-----~L~h~~~d~~-----~~L~el~RvLKPGG~liis 323 (629)
-|+|+|-. .+|.+.+..+ .+|.-...+|||||.|+--
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 99999933 3433332211 3566677899999999865
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.13 E-value=3.2 Score=37.34 Aligned_cols=85 Identities=25% Similarity=0.283 Sum_probs=57.6
Q ss_pred CCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCC---CC-C-CCCCCeeEEEecCcccccccCHHHH
Q 006834 232 GVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSK---RL-P-YPARAFDMAHCSGCLIPWYMYDGLY 306 (629)
Q Consensus 232 GtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~---~L-p-~pd~sFDlV~~s~~L~h~~~d~~~~ 306 (629)
|.|.++..+++..- ..++.+|.++.-++.+++.|....+...+.. .+ . ...+.+|+|+-.-. -...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------SGDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------SHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-------cHHH
Confidence 45788888887533 3556679999999999998843333221110 01 1 23358999984321 2568
Q ss_pred HHHHHhcccCCcEEEEEeC
Q 006834 307 LLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 307 L~el~RvLKPGG~liis~P 325 (629)
+.+...+|+|||.+++.+-
T Consensus 72 ~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHhccCCEEEEEEc
Confidence 8999999999999999874
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=81.11 E-value=4.3 Score=42.11 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=70.4
Q ss_pred CCCeeEEEeecccchhHHhhhhC----C-CeEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCC------CCc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSK----Y-PVWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFST------YPR 541 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~----~-~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~------yp~ 541 (629)
...-++||.+|+++|=-|.+|+. . .|+++=.-|.-.. --.+.+.+-|+ |-+.+ +..+.++. +..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~-~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYE-LGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 34466899999988865555543 2 2433322221110 11223344565 33332 22232222 456
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe---------CH-----HHH--------HHHHHHHhcCCC
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD---------TV-----EML--------VKIRSITEGMRW 599 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---------~~-----~~~--------~~~~~~~~~l~w 599 (629)
+||+|=.++= +-.....+...-+.|||||.+|+-+ +. ... .-.+.+.+.=++
T Consensus 156 ~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~ 229 (247)
T PLN02589 156 TFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRI 229 (247)
T ss_pred cccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCE
Confidence 8999876332 2223445555568999999988742 10 111 112334555677
Q ss_pred eEEEeecCCCCCCCceEEEEEec
Q 006834 600 KSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 600 ~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
++.+.-. .+.+++++|.
T Consensus 230 ~~~llPi------gDGl~l~~k~ 246 (247)
T PLN02589 230 EICMLPV------GDGITLCRRI 246 (247)
T ss_pred EEEEEEe------CCccEEEEEe
Confidence 7777643 3568888885
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.49 E-value=4.7 Score=42.62 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=64.1
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhhcccceeccccc-------------cCCCC
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCE-------------AFSTY 539 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e-------------~f~~y 539 (629)
.+..+..|.||=+|.|-||.++.+.+.+ |-=+-+|.+|.. =+.+.|..++..|.++. -...+
T Consensus 71 ~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~----Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 71 LLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA----VIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred hhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH----HHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 3455666899999999999999998875 433334444433 24455666666653332 11226
Q ss_pred CcccceeeccccccccCCCcCH-HHHHHHHhhcccCCcEEEEE
Q 006834 540 PRTYDLIHASGVFSIYQDRCDI-TNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 540 p~t~Dl~H~~~~fs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~ 581 (629)
+++||+|=.+.-=-...+.-.. +.++....|.|+|+|.++..
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 6789987652211000000011 45777789999999999997
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.31 E-value=6.4 Score=43.58 Aligned_cols=120 Identities=22% Similarity=0.273 Sum_probs=73.5
Q ss_pred EEEeecccchhHHhhhhCCCe-EEEEecCCCCCCCchHHHHhh----cccceecccc--ccCCCCC---c---ccceeec
Q 006834 482 NVMDMNAYLGGFAAAMSKYPV-WVMNVVPFHSNPDTLGAIYER----GLIGTYQDWC--EAFSTYP---R---TYDLIHA 548 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~--e~f~~yp---~---t~Dl~H~ 548 (629)
.|||+=|.+|||+-+.+.-+- -|++ +|.+..-|+.+.+- |+-+.-|.|- ..|.-+- + +||+|=.
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA~~vt~---VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGASEVTS---VDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred eEEEecccCcHHHHHHHhcCCCceEE---EeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 499999999999988776654 3344 45554455555442 4434445443 2343333 3 9999876
Q ss_pred cc-cccccCCC-----cCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCCCeEEEe
Q 006834 549 SG-VFSIYQDR-----CDITNILLEMDRILRPEGTVIFRDT------VEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 549 ~~-~fs~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~ 604 (629)
+= -|+..+.. =+..+++...-+||+|||.+++... ...+..|.+-+..+.=..++.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 42 24433322 1334588999999999999999733 334556666666664444444
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.31 E-value=17 Score=36.76 Aligned_cols=138 Identities=17% Similarity=0.279 Sum_probs=94.2
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhC---CC-eEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCccccee--
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSK---YP-VWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLI-- 546 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~---~~-v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~-- 546 (629)
+|+.|+- ||=+||-.|.-..++.+ .+ |..+-++|.-.. ..|.++-+|-- +.++-| -.+|.+|-.+
T Consensus 73 pi~~g~~--VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve 144 (231)
T COG1889 73 PIKEGSK--VLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRPNIIPILED-----ARKPEKYRHLVE 144 (231)
T ss_pred CcCCCCE--EEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCCCceeeecc-----cCCcHHhhhhcc
Confidence 4666765 99999999999999865 35 789999998876 88888888864 777765 4577666542
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEE----------eCHHHHH-HHHHHHhcCCCeEE-EeecCCCCCCCc
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR----------DTVEMLV-KIRSITEGMRWKSQ-IMDHESGPFNPE 614 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~----------d~~~~~~-~~~~~~~~l~w~~~-~~~~e~~~~~~e 614 (629)
|.+.+|..-..+-..+=+..-++.-|++||++++. |+.++.. .++++-. =..++. ..+.| |.++.
T Consensus 145 ~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~-~~f~i~e~~~Le--Pye~D 221 (231)
T COG1889 145 KVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEE-GGFEILEVVDLE--PYEKD 221 (231)
T ss_pred cccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHh-cCceeeEEeccC--Ccccc
Confidence 34555554444445555778889999999999885 4455544 4444433 233433 34444 66677
Q ss_pred eEEEEEec
Q 006834 615 KILFAAKT 622 (629)
Q Consensus 615 ~~l~~~K~ 622 (629)
-.+|..|.
T Consensus 222 H~~i~~~~ 229 (231)
T COG1889 222 HALIVAKY 229 (231)
T ss_pred eEEEEEee
Confidence 78877663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 629 | |||
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 1e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-06 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 4e-06 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 5e-06 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 7e-06 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-05 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-05 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 3e-05 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 4e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 6e-05 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 1e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 1e-04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 2e-04 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 2e-04 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 2e-04 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-04 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 3e-04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 5e-04 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 6e-04 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 7e-04 |
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 27/154 (17%), Positives = 46/154 (29%), Gaps = 35/154 (22%)
Query: 202 PNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARR-------- 253
P +A ++ + LT D GCG G T+ A
Sbjct: 28 PGSPEATRKAVSFINELTDD--AKIADIGCG---TGG-------QTLFLADYVKGQITGI 75
Query: 254 DTHEAQVQFALER----GVPAMIGVI--SSKRLPYPARAFDMAHCSGCLIPWYMYDGLYL 307
D ++ E + I S LP+ D+ G + + + +
Sbjct: 76 DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI--YNIGFERGM 133
Query: 308 LEVDRVLRPGGY-------WILSGPPIHWKKYWR 334
E + L+ GG+ W S P + +W
Sbjct: 134 NEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWM 167
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 63/445 (14%), Positives = 127/445 (28%), Gaps = 130/445 (29%)
Query: 87 HHQIEINSTVSLHEFPPCDMSYSDITPCQDPVRSRKFDREMAKYRERHCPKSEELLRCLI 146
HH ++ H++ Y DI + FD C +++ + ++
Sbjct: 2 HHHHHMDFETGEHQY-----QYKDILSVFEDAFVDNFD----------CKDVQDMPKSIL 46
Query: 147 PAPPKYKTPFKWPQSRDYAWYDNI---PHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPN 203
+ D+I G F T
Sbjct: 47 -------------SKEE---IDHIIMSKDAV-------------SGTLRLF---WTLLSK 74
Query: 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVAS--WGAYLLKRDIL---TMSFAR----RD 254
+ + E++ + + + + T S Y+ +RD L FA+ R
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 255 THEAQVQFALERGVPA-------MIGVISSKRLPYPARAFDMAHCSG--CLIPWYMYDGL 305
+++ AL PA ++G SG + D
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLG-------------------SGKTWVAL----DVC 171
Query: 306 YLLEVDRVLRPGGYWILSG----PPIHWKKYWRGWERTKEDLKQEQD-------TIEDIA 354
+V + +W+ P + + + + D I I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 355 KRLCWKKLIE----KNDLAI----W-QKPINHIDCNKSKVVYKTPQICGPDNPDTAWYKD 405
L ++L++ +N L + K N + K++ T D A
Sbjct: 232 AEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTT- 287
Query: 406 MEACITPLPEVSSSDEVAGGALEKWPE-RAFSVPPRISSGS---LSGITAEKLREDNELW 461
+ + DEV L K+ + R +P + + + LS I AE +R+ W
Sbjct: 288 -HISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATW 344
Query: 462 KDRMTYYKKIDGLFHKGRYRNVMDM 486
+K ++ + +++
Sbjct: 345 D----NWKHVN----CDKLTTIIES 361
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 4e-06
Identities = 24/128 (18%), Positives = 35/128 (27%), Gaps = 33/128 (25%)
Query: 228 DTGCGVASWGAYLLKRDILTMSFARR--------DTHEAQVQFALER----GVPAMIGVI 275
D GCG TM A D + G+ + I
Sbjct: 52 DIGCGTG----------GQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGI 101
Query: 276 --SSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGY-------WILSGPP 326
S LP+ D+ G + + + L E + L+ GGY W P
Sbjct: 102 VGSMDDLPFRNEELDLIWSEGAI--YNIGFERGLNEWRKYLKKGGYLAVSECSWFTDERP 159
Query: 327 IHWKKYWR 334
+W
Sbjct: 160 AEINDFWM 167
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 5e-06
Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 16/141 (11%)
Query: 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARR----DTHEAQV 260
A + +++P +T +D GCG Y + A++ D E +
Sbjct: 29 AAGEWHELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEH------GAKKVLGIDLSERML 80
Query: 261 QFALERGVPAMIGVI--SSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGG 318
A + ++ + + + A+++ S L +D + +V L+ G
Sbjct: 81 TEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDI-CKKVYINLKSSG 139
Query: 319 YWILSGP-PIHWKKYWRGWER 338
+I S P+ + W
Sbjct: 140 SFIFSVEHPVFTADGRQDWYT 160
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 7e-06
Identities = 26/121 (21%), Positives = 38/121 (31%), Gaps = 22/121 (18%)
Query: 228 DTGCGVASWGAYLLKRDILTMSFARR-------DTHEAQVQFALERGVPAMIGVI--SSK 278
D GCG T +R D E +Q ERG + I
Sbjct: 59 DVGCGDGY----------GTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLS 108
Query: 279 RLPYPARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWE 337
LP+ F+ L + + L E+ RVL+ GY ++ K +
Sbjct: 109 SLPFENEQFEAIMAINSL--EWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYP 166
Query: 338 R 338
R
Sbjct: 167 R 167
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 19/163 (11%)
Query: 193 RFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-------DI 245
RF + + ++ ++ IP G + G +L D
Sbjct: 5 RFSQSEYVYGTEPNDFLVSVANQIP--QG---KILCLAEGEGRNACFLASLGYEVTAVDQ 59
Query: 246 LTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGL 305
++ A+ A+ Q A E+GV + A A++ C +P +
Sbjct: 60 SSVGLAK-----AK-QLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQ- 112
Query: 306 YLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQD 348
+V + L+PGG +IL G +Y G + + L + +
Sbjct: 113 LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLET 155
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARR----DTHEAQVQFALERGVP 269
++P GG VD GCG + + + A D E + A G
Sbjct: 37 AMLPEVGG--LRIVDLGCGFGWFCRWAHEH------GASYVLGLDLSEKMLARARAAGPD 88
Query: 270 AMIGVISS--KRLPYPARAFDMAHCSGCLIPWYMYDGLYLL-EVDRVLRPGGYWILSGP- 325
I + +L P +FD+A+ S L Y+ D L V + L PGG+++ S
Sbjct: 89 TGITYERADLDKLHLPQDSFDLAYSSLAL--HYVEDVARLFRTVHQALSPGGHFVFSTEH 146
Query: 326 PIHWKKYWRGWER 338
PI+ GW
Sbjct: 147 PIYMAPARPGWAI 159
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 35/156 (22%), Positives = 52/156 (33%), Gaps = 34/156 (21%)
Query: 191 RFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSF 250
+ G + + D D + L+ + G +D GCG+ L
Sbjct: 32 YWEDAGADVSVDDATDRLTDEMIALLDVRSG--DRVLDVGCGIGKPAVRL---------- 79
Query: 251 ARR--------DTHEAQVQFALER----GVPAMIGVI--SSKRLPYPARAFDMAHCSGCL 296
A QV A R G+ + + LP+ +FD L
Sbjct: 80 ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL 139
Query: 297 IPWYMYD-GLYLLEVDRVLRPGGY-----WILSGPP 326
+M D G L E+ RVLRPGG ++L P
Sbjct: 140 H--HMPDRGRALREMARVLRPGGTVAIADFVLLAPV 173
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 26/162 (16%)
Query: 228 DTGCGVASWGAYLLKR---DI--LTMSFARRDTHEAQVQFALER----GVPAMIGVISSK 278
D G G + + +S + Q++ A I +
Sbjct: 29 DCGAGGDLPPLSIFVEDGYKTYGIEIS-------DLQLKKAENFSRENNFKLNISKGDIR 81
Query: 279 RLPYPARAFDMAHCSGCLIPWYMYDGLYLL-EVDRVLRPGGYWILSGPPIHWKKYWRGWE 337
+LP+ + + G + D + E+ RVL+PGG ++ ++Y +G +
Sbjct: 82 KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEK 141
Query: 338 RTKEDLKQEQD---------TIEDIAKRLCWKKLIEKNDLAI 370
+ + Q + ++E+ K K++ K D +
Sbjct: 142 IGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVV 183
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 21/121 (17%)
Query: 225 TAVDTGCGVASWGAYLLKRDILTMSFARR---DTHEAQVQFALERGVPAMIGVISSKRLP 281
V+ G G G + + + + E + A +RGV + G + LP
Sbjct: 50 RGVEIGVGT---GRFAVP-------LKIKIGVEPSERMAEIARKRGVFVLKGTA--ENLP 97
Query: 282 YPARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGPPIHW---KKYWRGWE 337
+FD A + ++ D L E R+L+ GGY I+ ++Y + E
Sbjct: 98 LKDESFDFALMVTTI--CFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKE 155
Query: 338 R 338
+
Sbjct: 156 K 156
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 20/112 (17%)
Query: 228 DTGCGVASWGAYLLKRDILTMSFARR-------DTHEAQVQFALERGVPAMIGVISSKRL 280
D GCG G YL +++ D + +A + A V
Sbjct: 52 DAGCGQGRIGGYL----------SKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVD 101
Query: 281 PYPARAFDMAHCSGCLIPWYMYDGLY--LLEVDRVLRPGGYWILS-GPPIHW 329
FD+ +G ++ + DG L + R L G ++ G W
Sbjct: 102 QISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGW 153
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 23/200 (11%), Positives = 52/200 (26%), Gaps = 13/200 (6%)
Query: 158 WPQSRDYAWYDNIPHKELSIEKAGQNWIQVEGHRFRFPGGGTTFPN----GADAYIDNIN 213
+ + I ++ KA W Q+ GG + + ++
Sbjct: 12 SGLVPRGSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFL 71
Query: 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKR---DILTMSFARRDTHEAQVQFALERGVPA 270
P G +D G G+ LL ++ + +A+ E
Sbjct: 72 REGPNKTGTSCA-LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVR 130
Query: 271 MIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGL-YLLEVDRVLRPGGYWILSGP---- 325
+ ++D+ + +L LRP G ++
Sbjct: 131 NYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 190
Query: 326 PIHWKKYWRGWERTKEDLKQ 345
+ R + +++
Sbjct: 191 GVILDDVDSSVCRDLDVVRR 210
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 19/149 (12%)
Query: 191 RFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSF 250
R F G + DA + + E + + +D GCG + +
Sbjct: 58 RRAFLDAGH-YQPLRDAIVAQLRERLDDKATAV---LDIGCGEGYYTHAFADA----LPE 109
Query: 251 ARR---DTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYL 307
D + ++ A +R V SS RLP+ + D
Sbjct: 110 ITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAE------- 162
Query: 308 LEVDRVLRPGGYWILSGPPIHWKKYWRGW 336
E+ RV++PGG+ I + P +G
Sbjct: 163 -ELARVVKPGGWVITATPGPRHLMELKGL 190
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 30/128 (23%)
Query: 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARR-------DTHEAQVQFAL 264
+ + G I VD GCG G D + ++
Sbjct: 10 LPNIFEGKKGVI---VDYGCGN---G-------FYCKYLLEFATKLYCIDINVIALKEVK 56
Query: 265 ERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILS 323
E+ ++I + S P + D + M D + EV R+L+ G I+
Sbjct: 57 EK-FDSVITL--SDPKEIPDNSVDFILFANSF--HDMDDKQHVISEVKRILKDDGRVII- 110
Query: 324 GPPIHWKK 331
I W+K
Sbjct: 111 ---IDWRK 115
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 32/169 (18%), Positives = 51/169 (30%), Gaps = 39/169 (23%)
Query: 199 TTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI------LTMSFAR 252
+ A AY D + P G I TA+ + L ++ + +
Sbjct: 3 SALLRAAYAY-DRLRAHPPEVAGQIATAMASAVHPKGEEPVFL--ELGVGTGRIALPLIA 59
Query: 253 RDTHEAQVQFALERGVPAMIGVISSK----------------RLPYPARAFDMAHCSGCL 296
R + AL+ AM+ V K +P P +
Sbjct: 60 RG---YRY-IALDA-DAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114
Query: 297 IPWYMYD-GLYLLEVDRVLRPGG----YWILSGPPIHW--KKYWRGWER 338
+ D L E RVL+PGG W + W ++ WR +
Sbjct: 115 --HLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAA 161
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 20/144 (13%)
Query: 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER--GVP 269
I G I +D G G W +L + V+ A + V
Sbjct: 34 IEPWATGVDGVI---LDVGSGTGRWTGHLASLGHQIEGL---EPATRLVELARQTHPSVT 87
Query: 270 AMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDG---LYLLEVDRVLRPGGYWILS--- 323
G I+ L + + L +M G L+ + + GG ++S
Sbjct: 88 FHHGTIT--DLSDSPKRWAGLLAWYSL--IHMGPGELPDALVALRMAVEDGGGLLMSFFS 143
Query: 324 --GPPIHWKKYWRGWERTKEDLKQ 345
+ + +L Q
Sbjct: 144 GPSLEPMYHPVATAYRWPLPELAQ 167
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 23/174 (13%), Positives = 54/174 (31%), Gaps = 22/174 (12%)
Query: 197 GGTTFPNGADAY----------IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL 246
G + + + Y ++ I L+ L G D G G + L + +
Sbjct: 1 GMSIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKG--SVIADIGAGTGGYSVALANQGLF 58
Query: 247 TMSFARRDTHEAQVQFALER-GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYD-G 304
+ + Q A+ V G ++ L P ++ D + +
Sbjct: 59 VYAV---EPSIVMRQQAVVHPQVEWFTG--YAENLALPDKSVDGVISILAI--HHFSHLE 111
Query: 305 LYLLEVDRVLRPGGYWILS-GPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRL 357
E+ R++R G +L+ + + + + + +++ L
Sbjct: 112 KSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLL 165
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 16/160 (10%)
Query: 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI----LTMSFARRDTHEAQVQ 261
+ I+ + L+ +D CGV + L + +S E ++
Sbjct: 22 RSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDIS-------EDMIR 74
Query: 262 FALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLL-EVDRVLRP 316
A E V +++L + + FD ++ + + + EV RVL+P
Sbjct: 75 KAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP 134
Query: 317 GGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKR 356
G +I+ + I D +R
Sbjct: 135 SGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEER 174
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 29/129 (22%)
Query: 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARR---------DT 255
A+ ++ G ++ GCG+ + T+ A+ D
Sbjct: 22 AETLEKLLHHDTVYPPG--AKVLEAGCGIGAQ----------TVILAKNNPDAEITSIDI 69
Query: 256 HEAQVQFALERGVPAMIGVISSKR-----LPYPARAFDMAHCSGCLIPWYMYD-GLYLLE 309
++ A E I + + LP+ +FD L ++ L
Sbjct: 70 SPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL--EHLQSPEEALKS 127
Query: 310 VDRVLRPGG 318
+ +VL+PGG
Sbjct: 128 LKKVLKPGG 136
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 33/178 (18%), Positives = 53/178 (29%), Gaps = 15/178 (8%)
Query: 178 EKAGQNWIQVEGHRFRFPGGGTTFPNGADAYIDNINELI-PLTGGNIRTAVDTGCGVASW 236
KA + W V GG + D I+ I L G A+D G G+
Sbjct: 51 GKALEYWRTVPATVSGVLGG---MDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRI 107
Query: 237 GAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIG---VISSKRLPYPARAFDMAHCS 293
LL + T + + ++ A +G + S + P +D+
Sbjct: 108 TKNLLTKLYATTDLL--EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQ 165
Query: 294 GCLIPWYMYDGLYLL-EVDRVLRPGGY-----WILSGPPIHWKKYWRGWERTKEDLKQ 345
I D + + L P GY +G K R+ K+
Sbjct: 166 WTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR 223
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 629 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.62 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.6 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.57 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.57 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.57 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.56 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.56 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.56 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.56 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.56 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.55 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.55 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.54 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.53 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.53 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.52 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.52 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.51 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.51 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.51 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.51 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.5 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.5 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.5 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.5 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.49 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.49 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.49 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.49 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.49 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.48 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.48 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.48 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.48 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.48 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.48 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.48 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.47 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.47 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.47 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.47 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.46 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.46 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.45 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.44 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.44 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.44 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.44 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.44 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.43 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.43 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.43 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.43 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.43 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.43 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.41 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.41 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.41 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.41 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.4 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.4 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.39 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.39 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.39 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.38 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.37 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.37 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.36 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.36 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.36 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.36 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.35 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.34 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.34 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.34 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.34 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.33 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.33 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.32 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.32 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.32 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.31 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.3 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.3 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.29 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.29 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.29 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.28 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.28 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.27 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.27 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.27 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.26 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.26 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.25 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.25 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.24 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.24 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.24 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.24 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.23 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.23 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.23 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.22 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.22 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.22 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.22 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.21 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.21 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.21 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.2 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.2 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.19 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.19 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.18 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.18 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.18 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.17 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.17 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.17 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.17 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.16 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.16 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.16 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.15 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.15 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.15 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.14 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.14 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.14 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.14 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.14 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.14 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.13 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.13 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.13 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.13 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.12 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.12 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.12 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.11 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.11 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.11 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.11 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.11 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.11 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.11 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.11 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.1 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.1 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.09 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.09 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.09 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.09 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.08 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.08 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.07 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.06 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.06 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.06 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.06 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.05 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.05 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.04 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.04 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.04 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.03 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.03 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.03 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.02 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.02 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.02 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.02 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.02 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.02 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.02 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.01 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.01 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.99 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.99 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.99 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.98 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.98 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.98 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.97 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.96 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.96 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.93 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.93 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.92 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.92 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.92 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.91 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.91 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.9 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.9 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.89 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.88 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.88 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.87 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.87 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.87 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.87 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.87 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.87 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.86 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.86 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.86 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.85 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.84 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.84 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.83 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.83 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.83 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.82 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.82 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.82 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.82 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.81 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.81 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.81 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.8 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.79 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.78 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.77 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.77 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.76 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.75 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.75 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.75 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.75 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.75 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.75 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.74 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.74 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.74 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.74 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.74 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.73 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.73 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.72 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.72 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.72 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.71 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.71 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.71 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.7 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.7 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.7 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.68 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.68 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.68 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.68 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.67 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.67 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.67 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.67 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.66 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.66 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.66 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.66 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.66 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.66 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.66 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.65 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.65 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.64 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.64 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.63 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.63 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.63 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.63 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.63 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.62 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.62 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.62 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.62 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.62 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.61 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.6 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.6 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.6 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.6 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 98.59 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.58 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.58 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.58 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.58 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.57 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.57 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.57 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.57 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.56 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.55 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.55 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.55 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.55 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.55 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.55 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.55 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.55 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.54 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.54 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.54 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.54 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.54 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.53 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.53 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.53 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.53 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.52 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.52 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.52 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.52 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.51 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.51 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.51 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.51 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.51 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.5 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.5 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.49 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.49 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.49 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.49 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.49 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.49 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.48 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.48 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.48 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.46 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.45 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.42 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.41 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.41 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.4 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.39 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.38 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.37 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.36 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.36 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.36 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.35 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.35 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.34 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.34 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.33 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.33 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.32 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.31 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.31 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.31 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.31 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.3 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.3 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.3 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.28 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.28 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.27 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.27 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.27 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.27 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.26 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.25 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.24 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.24 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.24 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.24 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.23 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.22 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.22 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.22 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.21 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.2 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.2 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.2 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.18 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.18 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.18 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.18 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.17 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.16 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.16 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.15 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.15 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.15 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.14 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.13 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.13 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.12 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.12 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.12 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.11 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.11 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.11 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.1 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.1 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.08 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.08 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.07 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.07 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.05 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.04 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.04 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.04 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.04 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.03 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.03 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.03 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.03 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.02 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.02 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.02 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.01 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.01 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.01 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.01 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.0 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 97.99 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 97.99 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.99 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 97.99 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.99 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 97.98 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.98 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.97 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.97 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.96 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.96 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 97.95 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.95 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 97.94 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 97.93 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.91 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 97.9 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.89 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 97.89 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.89 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 97.88 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.88 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.86 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.85 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 97.84 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 97.84 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.84 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.82 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.81 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 97.81 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.81 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.81 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 97.79 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.79 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.79 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.79 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 97.78 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 97.78 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.78 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.78 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 97.78 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.77 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.76 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.75 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.72 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.71 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 97.69 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.69 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 97.68 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.68 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.68 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 97.65 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 97.65 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.64 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 97.64 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.64 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 97.61 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 97.61 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 97.59 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.59 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 97.59 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 97.58 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.58 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.57 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 97.56 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.56 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.55 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.54 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 97.54 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.5 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 97.5 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.49 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.49 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-16 Score=159.99 Aligned_cols=110 Identities=24% Similarity=0.307 Sum_probs=93.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~ 285 (629)
..+++.|.+..+. ..+|||||||+|.++..|++++.. ++++|+|+.|++.|+++ .++.+.+++.+.+|++++
T Consensus 27 ~~l~~~l~~~~~~----~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~~~-~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 27 RALFRWLGEVAPA----RGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQALRH-PRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHHHHSSC----SSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCCCC-TTEEEEECCTTCCCCCSS
T ss_pred HHHHHHHHHhcCC----CCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhhhc-CCceeehhhhhhhcccCC
Confidence 4456666665543 348999999999999999998864 46669999999988654 578999999999999999
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+||+|+|..++ ||. ++..++.++.|+|||||.|++...
T Consensus 99 sfD~v~~~~~~-h~~-~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 99 SVDVAIAAQAM-HWF-DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CEEEEEECSCC-TTC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEEEeeeh-hHh-hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 99999999999 666 678899999999999999998753
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=142.62 Aligned_cols=135 Identities=10% Similarity=-0.028 Sum_probs=106.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccc-cC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY-MY 302 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~-~d 302 (629)
.+|||+|||+|.++..|++.+.. ++++|+++.+++.|+++..++.+.++|...+++++++||+|++..+++|+. .+
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 38999999999999999999764 566699999999999998889999999999998899999999999998886 35
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeec
Q 006834 303 DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLI 363 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 363 (629)
...+|.++.++|||||++++..+............. .......+.+.++++..+|+.+.
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gf~~~~ 178 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVA--TAYRWPLPELAQALETAGFQVTS 178 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSS--CEEECCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhh--hhccCCHHHHHHHHHHCCCcEEE
Confidence 789999999999999999998864443222211111 11112245677888888886653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=141.56 Aligned_cols=150 Identities=18% Similarity=0.096 Sum_probs=112.3
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc--CCCeEEEEecCCCCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER--GVPAMIGVISSKRLPYPA 284 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er--g~~~~~~v~d~~~Lp~pd 284 (629)
..++.+.+.++ + +.+|||+|||+|.++..|++.+. .++++|+++.+++.|+++ ..++.+.++|...+++++
T Consensus 42 ~~~~~l~~~~~--~--~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~ 114 (242)
T 3l8d_A 42 TIIPFFEQYVK--K--EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFEN 114 (242)
T ss_dssp THHHHHHHHSC--T--TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHHcC--C--CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCC
Confidence 34556666554 2 34899999999999999999976 456779999999999987 457899999999999989
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCcc----CcchhhhhHHHHHHHHHHHhcce
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWE----RTKEDLKQEQDTIEDIAKRLCWK 360 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~----~~~e~l~~~~~~ie~l~~~l~w~ 360 (629)
++||+|+|..+++|+. ++..++.++.++|||||+++++.+..........+. ............++.+++..+|+
T Consensus 115 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 193 (242)
T 3l8d_A 115 EQFEAIMAINSLEWTE-EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFK 193 (242)
T ss_dssp TCEEEEEEESCTTSSS-CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEE
T ss_pred CCccEEEEcChHhhcc-CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCE
Confidence 9999999999998885 889999999999999999999875332211111111 11111112234577888888887
Q ss_pred eecc
Q 006834 361 KLIE 364 (629)
Q Consensus 361 ~v~~ 364 (629)
.+..
T Consensus 194 ~~~~ 197 (242)
T 3l8d_A 194 VVDG 197 (242)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7653
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=140.43 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=93.6
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC----------CeEEEE
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV----------PAMIGV 274 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~----------~~~~~v 274 (629)
.....+.+.+.+...++ .+|||+|||+|.++..|++.+.. ..++++|+|+.+++.|+++.. ++.+.+
T Consensus 14 ~~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 90 (219)
T 3jwg_A 14 NQQRLGTVVAVLKSVNA--KKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ 90 (219)
T ss_dssp HHHHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE
T ss_pred hHHHHHHHHHHHhhcCC--CEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe
Confidence 34445566666654443 48999999999999999998642 356788999999999997631 688999
Q ss_pred ecCCCCCCCCCCeeEEEecCcccccccCH--HHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 275 ISSKRLPYPARAFDMAHCSGCLIPWYMYD--GLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 275 ~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
+|...+++++++||+|+|..+++|+. ++ ..+++++.++|||||+++ .+++..
T Consensus 91 ~d~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i-~~~~~~ 144 (219)
T 3jwg_A 91 SSLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIV-STPNKE 144 (219)
T ss_dssp CCSSSCCGGGTTCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEE-EEEBGG
T ss_pred CcccccccccCCCCEEEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEE-Eccchh
Confidence 99888887788999999999998886 44 689999999999999554 444433
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=146.49 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=93.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYP 283 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~p 283 (629)
++.+.+.+...++. +|||+|||+|.++..|++.+. .++++|+|+.|++.|+++ + .++.+.++|...+|++
T Consensus 26 ~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 26 LAKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHhCCCCCC--EEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 44555555554444 999999999999999999875 567779999999999875 3 4588999999999999
Q ss_pred CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++||+|+|..+++|+. ++..+|.++.|+|||||+|++..+
T Consensus 101 ~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEhhhhHhcC-CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999999999998886 889999999999999999999753
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-15 Score=150.12 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=107.0
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPA 284 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd 284 (629)
+...+.+.+...+ +.+|||+|||+|.++..|++.+.. .++++|+|+.+++.|+++. .++.+.+.|...+++++
T Consensus 81 ~~~~~l~~l~~~~--~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 156 (254)
T 1xtp_A 81 GSRNFIASLPGHG--TSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPP 156 (254)
T ss_dssp HHHHHHHTSTTCC--CSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCS
T ss_pred HHHHHHHhhcccC--CCEEEEECCCcCHHHHHHHHhhcC--EEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCC
Confidence 3444555554333 449999999999999999988632 4677899999999999875 35888889998899888
Q ss_pred CCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 285 RAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
++||+|+|..+++|+.. +...+|.++.++|||||++++..+......... ...........+.+.++++..+|+.+
T Consensus 157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~aGf~~~ 233 (254)
T 1xtp_A 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV--DKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE--ETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccccee--cccCCcccCCHHHHHHHHHHCCCEEE
Confidence 99999999999988863 467899999999999999999875221111000 00011111224556777777777554
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-15 Score=144.16 Aligned_cols=99 Identities=11% Similarity=-0.019 Sum_probs=83.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-----------------CCCeEEEEecCCCCCCCC-
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-----------------GVPAMIGVISSKRLPYPA- 284 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-----------------g~~~~~~v~d~~~Lp~pd- 284 (629)
+.+|||+|||+|.++..|+++|.. ++|+|+|+.|++.|+++ ..++.+.++|...+++++
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 348999999999999999998764 56669999999999876 246889999999998765
Q ss_pred CCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 285 RAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
++||+|++..+++|++.. ...+++++.|+|||||++++..
T Consensus 100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 899999999999887633 3569999999999999855543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-14 Score=142.89 Aligned_cols=116 Identities=15% Similarity=0.106 Sum_probs=97.1
Q ss_pred chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecC
Q 006834 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISS 277 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~ 277 (629)
.....++.+.+.+...++. +|||+|||+|.++..|++... ..++++|+|+.+++.|+++ + .++.+.++|.
T Consensus 20 ~~~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~ 95 (256)
T 1nkv_A 20 FTEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95 (256)
T ss_dssp CCHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CCHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh
Confidence 3466677777777665554 999999999999999998731 2457779999999999865 3 3589999999
Q ss_pred CCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 278 KRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 278 ~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
..+++ +++||+|+|..+++|+. ++..+|.++.|+|||||++++..+
T Consensus 96 ~~~~~-~~~fD~V~~~~~~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 96 AGYVA-NEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp TTCCC-SSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCc-CCCCCEEEECCChHhcC-CHHHHHHHHHHHcCCCeEEEEecC
Confidence 98887 88999999999998876 789999999999999999999865
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=139.11 Aligned_cols=146 Identities=17% Similarity=0.124 Sum_probs=109.1
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYPA 284 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~pd 284 (629)
+.+.+.+...++. +|||+|||+|.++..+++.+.....++++|+++.+++.|+++ + .++.+...|...+++++
T Consensus 27 ~~~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFGLKEGM--TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHTCCTTC--EEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhCCCCCC--EEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 3444555544444 899999999999999998862223567889999999999875 3 35899999999999999
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeec
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLI 363 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 363 (629)
++||+|+++.+++|+. ++..++.++.++|||||.+++..+........ . ........+.+..+++..+|+.+.
T Consensus 105 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----~-~~~~~~~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELS-EPLKFLEELKRVAKPFAYLAIIDWKKEERDKG----P-PPEEVYSEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp SCEEEEEEESCGGGCS-SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSS----C-CGGGSCCHHHHHHHHHHTTCEEEE
T ss_pred CCeeEEEeehhhhhcC-CHHHHHHHHHHHhCCCeEEEEEEecccccccC----C-chhcccCHHHHHHHHHHCCCEEEE
Confidence 9999999999998886 88999999999999999999986432221111 1 111112245677888888887654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-14 Score=140.47 Aligned_cols=100 Identities=14% Similarity=0.023 Sum_probs=88.8
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV-PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
.+|||||||+|.++..|++.+.. ++++|+|+.+++.|+++.. ++.+.+.|...+ +++++||+|+|..+++|+. +
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~-~ 118 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID-D 118 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS-S
T ss_pred CcEEEECCCCCHHHHHHHHhCCc---EEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc-C
Confidence 47999999999999999998764 5667999999999998865 788888888877 4678999999999998887 8
Q ss_pred HHHHHHHHH-hcccCCcEEEEEeCCCC
Q 006834 303 DGLYLLEVD-RVLRPGGYWILSGPPIH 328 (629)
Q Consensus 303 ~~~~L~el~-RvLKPGG~liis~P~~~ 328 (629)
+..+|+++. |+|||||+++++.|+..
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 899999999 99999999999987654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=142.64 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=95.8
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCCCCCCe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPYPARAF 287 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~pd~sF 287 (629)
..+.+.+.... +.+|||+|||+|.++..|++.+.. .++++|+|+.+++.|+++. .++.+.++|...+++++++|
T Consensus 34 ~~l~~~~~~~~--~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 34 HELKKMLPDFN--QKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHHTTCCCCT--TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhhhccC--CCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCe
Confidence 34555555433 449999999999999999999763 4677799999999999874 57899999999999989999
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
|+|+|..+++|+. ++..+|+++.++|||||.++++.+.
T Consensus 110 D~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 110 NVVLSSLALHYIA-SFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEEchhhhhhh-hHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999999998885 8899999999999999999998653
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=142.57 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=98.6
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCC
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG---VPAMIGVISSK 278 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~ 278 (629)
.+.....+.+.+.+...++. +|||+|||+|.++..|++. +. .++++|+|+.+++.|+++. .++.+.+.|..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~ 112 (266)
T 3ujc_A 38 SGGLEATKKILSDIELNENS--KVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDIL 112 (266)
T ss_dssp TTHHHHHHHHTTTCCCCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT
T ss_pred cchHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc
Confidence 34445556666666554444 9999999999999999997 44 5677799999999999885 56899999999
Q ss_pred CCCCCCCCeeEEEecCcccccc-cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWY-MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~-~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+++++++||+|++..+++|+. .++..++.++.|+|||||.+++..+
T Consensus 113 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9999999999999999998883 2678899999999999999999875
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=147.13 Aligned_cols=115 Identities=16% Similarity=0.050 Sum_probs=89.0
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp 281 (629)
.+.+..++......+.+|||+|||+|.++..|+++. .....++|+|+|+.|++.|+++ + .++.+.++|...+|
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~ 136 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 136 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc
Confidence 344444443222234499999999999999999863 2344678889999999999975 2 36889999998887
Q ss_pred CCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
++ .||+|+++.+++|+... ...+|++++|+|||||.|+++.+
T Consensus 137 ~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 137 IE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp CC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 64 69999999999777532 35689999999999999999753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-14 Score=136.63 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=96.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~ 279 (629)
....+.+.+.+... ..+|||+|||+|.++..|+++ ....++++|+++.+++.|+++ + .++.+.+.|...
T Consensus 30 ~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 30 PIIAENIINRFGIT---AGTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHHCCC---EEEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred HHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 44455555555433 238999999999999999997 234678889999999999876 2 368999999999
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++++++||+|++..+++|+. ++..++.++.++|||||++++..+.
T Consensus 105 ~~~~~~~~D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 105 IPIEDNYADLIVSRGSVFFWE-DVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp CSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCCcccccEEEECchHhhcc-CHHHHHHHHHHhCCCCCEEEEEecc
Confidence 999999999999999998885 8899999999999999999998643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=143.73 Aligned_cols=116 Identities=25% Similarity=0.375 Sum_probs=97.1
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~ 278 (629)
.....+.+.+.+...++. +|||||||+|.++..+++.. ...++++|+|+.+++.|+++ +. ++.+..+|..
T Consensus 46 ~~~~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 121 (273)
T 3bus_A 46 TDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAM 121 (273)
T ss_dssp HHHHHHHHHHHSCCCTTC--EEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccc
Confidence 445566677776655444 99999999999999999863 23567789999999999875 32 5899999999
Q ss_pred CCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+|+++++||+|++..+++|+. ++..+|.++.++|||||++++..+
T Consensus 122 ~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 122 DLPFEDASFDAVWALESLHHMP-DRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp SCCSCTTCEEEEEEESCTTTSS-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCCCCCCccEEEEechhhhCC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999998886 789999999999999999999864
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=143.10 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=106.8
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC--CC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL--PY 282 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L--p~ 282 (629)
.....+.+.+.++... .+.+|||||||+|.++..|++.+.. ++++|+|+.+++.|+++ +.+...|...+ ++
T Consensus 25 ~~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~ 97 (240)
T 3dli_A 25 RELVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSL 97 (240)
T ss_dssp HHHHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHHTT---SEEECSCHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHHhh---cceeeccHHHHhhhc
Confidence 4455555655555322 2348999999999999999998765 46669999999999887 67777777665 78
Q ss_pred CCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccC-ccCcchhhhhHHHHHHHHHHHhcce
Q 006834 283 PARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRG-WERTKEDLKQEQDTIEDIAKRLCWK 360 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~-w~~~~e~l~~~~~~ie~l~~~l~w~ 360 (629)
++++||+|+|..+++|+... ...++.++.|+|||||++++..+.......... |...........+.+..+++..+|+
T Consensus 98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 177 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFR 177 (240)
T ss_dssp CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCE
T ss_pred CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCe
Confidence 88999999999999888732 378999999999999999999875443211110 1011111111235567777777775
Q ss_pred e
Q 006834 361 K 361 (629)
Q Consensus 361 ~ 361 (629)
.
T Consensus 178 ~ 178 (240)
T 3dli_A 178 D 178 (240)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.8e-14 Score=137.87 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=87.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC-CeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV-PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
+.+|||+|||+|.++..|++++. .++++|+++.+++.|+++.. ++.+.++|...++++ ++||+|+|..+++|+.
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~- 120 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLT- 120 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSC-
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCC-
Confidence 34899999999999999999865 45677999999999998865 788999999999888 9999999999998886
Q ss_pred CHHH--HHHHHHhcccCCcEEEEEeCCC
Q 006834 302 YDGL--YLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 302 d~~~--~L~el~RvLKPGG~liis~P~~ 327 (629)
++.. +|.++.++|||||.+++..+..
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 5555 9999999999999999997543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=145.44 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=96.6
Q ss_pred hHHHHHHHHhhc----CccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEE
Q 006834 205 ADAYIDNINELI----PLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIG 273 (629)
Q Consensus 205 a~~~i~~I~~lL----~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~ 273 (629)
.....+.+.+.+ ...++ .+|||+|||+|.++..|++. +. .++++|+|+.+++.|+++ + .++.+.
T Consensus 63 ~~~~~~~l~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~ 137 (297)
T 2o57_A 63 SLRTDEWLASELAMTGVLQRQ--AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVK 137 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEE
T ss_pred HHHHHHHHHHHhhhccCCCCC--CEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEE
Confidence 344556666666 44433 49999999999999999987 54 567779999999999865 3 358999
Q ss_pred EecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 274 VISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 274 v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++|...+|+++++||+|++..+++|+. ++..+|.++.|+|||||++++..+
T Consensus 138 ~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 138 YGSFLEIPCEDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp ECCTTSCSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcCcccCCCCCCCEeEEEecchhhhcC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999999999999999999998987 789999999999999999999875
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=137.10 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=92.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC----------CeEEEEe
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV----------PAMIGVI 275 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~----------~~~~~v~ 275 (629)
....+.+.+.+...++. +|||+|||+|.++..|++++.. ..++++|+++.+++.|+++.. ++.+.++
T Consensus 15 ~~~~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~ 91 (217)
T 3jwh_A 15 QQRMNGVVAALKQSNAR--RVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG 91 (217)
T ss_dssp HHHHHHHHHHHHHTTCC--EEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHHhcCCC--EEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC
Confidence 44456666666554444 9999999999999999997642 256778999999999987621 6889999
Q ss_pred cCCCCCCCCCCeeEEEecCcccccccCH--HHHHHHHHhcccCCcEEEEEe
Q 006834 276 SSKRLPYPARAFDMAHCSGCLIPWYMYD--GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 276 d~~~Lp~pd~sFDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~liis~ 324 (629)
|...++.++++||+|+|..+++|+. ++ ..+++++.++|||||+++++.
T Consensus 92 d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 92 ALTYQDKRFHGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp CTTSCCGGGCSCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred CcccccccCCCcCEEeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 9877777778999999999998886 44 689999999999999666553
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=138.70 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=94.9
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc--CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR--DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPA 284 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~--g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd 284 (629)
.....+.+.+...++ .+|||+|||+|.++..+++. +. .++++|+|+.+++.|+++..++.+.+.|...++ ++
T Consensus 20 ~~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~ 93 (259)
T 2p35_A 20 RPARDLLAQVPLERV--LNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PA 93 (259)
T ss_dssp HHHHHHHTTCCCSCC--SSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CS
T ss_pred HHHHHHHHhcCCCCC--CEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-cc
Confidence 334455565554433 48999999999999999987 44 456669999999999998778999999999888 78
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++||+|++..+++|+. ++..+|.++.++|||||++++..+.
T Consensus 94 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 94 QKADLLYANAVFQWVP-DHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp SCEEEEEEESCGGGST-THHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CCcCEEEEeCchhhCC-CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8999999999997765 8899999999999999999998753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=142.20 Aligned_cols=99 Identities=15% Similarity=0.050 Sum_probs=84.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----------------------CCeEEEEecCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----------------------VPAMIGVISSKRL 280 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----------------------~~~~~~v~d~~~L 280 (629)
+.+|||+|||+|..+..|+++|.. ++|+|+|+.|++.|+++. .++.+.++|...+
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 348999999999999999999874 466699999999997643 4688999999999
Q ss_pred CCCC-CCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPA-RAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd-~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
++++ ++||+|++..++++++.. ...+++++.|+|||||+|++.+
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8764 899999999999887643 4679999999999999997654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-14 Score=135.67 Aligned_cols=100 Identities=24% Similarity=0.252 Sum_probs=87.7
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccccc
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM 301 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~ 301 (629)
.+.+|||+|||+|.++..+ +.. .++++|+|+.+++.|+++..++.+.+.|...+++++++||+|++..+++|+.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYP--QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCS--EEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CCCeEEEECCCCCHhHHhC---CCC--eEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence 3458999999999998887 331 4577799999999999987778899999999999899999999999998886
Q ss_pred CHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 302 YDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 302 d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
++..++.++.++|||||.++++.++.
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 88999999999999999999997644
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-14 Score=138.80 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=94.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYP 283 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~p 283 (629)
...+.+.+...++. +|||+|||+|.++..+++.+. .++++|+++.+++.|+++ + .++.+.++|...++++
T Consensus 10 ~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 10 LGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 84 (239)
T ss_dssp HHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC
T ss_pred cchHHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCC
Confidence 34455555555444 999999999999999999875 467779999999998865 3 4588999999999999
Q ss_pred CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++||+|+|..+++|+. ++..+|.++.|+|||||++++..+
T Consensus 85 ~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcEEEEEECCchhhcc-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99999999999998887 889999999999999999999754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-14 Score=144.62 Aligned_cols=117 Identities=19% Similarity=0.291 Sum_probs=97.2
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEe
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVI 275 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~ 275 (629)
...+.+.+.+.+...++. +|||||||+|.++..|++.+. .++++|+|+.|++.|+++. .++.+..+
T Consensus 42 ~~~~~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 116 (293)
T 3thr_A 42 TAEYKAWLLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA 116 (293)
T ss_dssp CHHHHHHHHHHHHHTTCC--EEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC
T ss_pred HHHHHHHHHHHhcccCCC--EEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeec
Confidence 356667777776655444 899999999999999999976 4567799999999998642 35678888
Q ss_pred cCCCCC---CCCCCeeEEEec-CcccccccC-------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 276 SSKRLP---YPARAFDMAHCS-GCLIPWYMY-------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 276 d~~~Lp---~pd~sFDlV~~s-~~L~h~~~d-------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+...++ +++++||+|+|. .+++|+. + ...+++++.++|||||+|++..++.
T Consensus 117 d~~~~~~~~~~~~~fD~V~~~g~~l~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 117 NWLTLDKDVPAGDGFDAVICLGNSFAHLP-DSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp CGGGHHHHSCCTTCEEEEEECTTCGGGSC-CSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ChhhCccccccCCCeEEEEEcChHHhhcC-ccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 888887 888999999998 8998887 5 7789999999999999999997654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-14 Score=139.11 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=95.7
Q ss_pred hHHHHHHHHhhcC-ccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecC
Q 006834 205 ADAYIDNINELIP-LTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISS 277 (629)
Q Consensus 205 a~~~i~~I~~lL~-~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~ 277 (629)
.......+.+.+. ..++ .+|||+|||+|.++..+++.+.. .++++|+|+.+++.|+++ +. .+.+.++|.
T Consensus 30 ~~~~~~~~l~~l~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 105 (257)
T 3f4k_A 30 SPEATRKAVSFINELTDD--AKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM 105 (257)
T ss_dssp CHHHHHHHHTTSCCCCTT--CEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CHHHHHHHHHHHhcCCCC--CeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 3455555666654 3333 48999999999999999998753 567889999999999875 32 389999999
Q ss_pred CCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 278 KRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 278 ~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
..+++++++||+|+|..+++|+ ++..++.++.++|||||++++..+
T Consensus 106 ~~~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 106 DNLPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp TSCSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999999999999999887 688999999999999999999875
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=139.92 Aligned_cols=116 Identities=18% Similarity=0.116 Sum_probs=95.8
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~ 278 (629)
.......+.+.+.. ...+.+|||||||+|.++..+++.+. ..++++|+|+.+++.|+++ + .++.+.+.|..
T Consensus 30 ~~~~~~~~l~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 106 (267)
T 3kkz_A 30 SPEVTLKALSFIDN-LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD 106 (267)
T ss_dssp CHHHHHHHHTTCCC-CCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred CHHHHHHHHHhccc-CCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh
Confidence 34455566666651 12345999999999999999999843 2567789999999999875 3 34899999999
Q ss_pred CCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+++++++||+|+|..+++|+ ++..+++++.++|||||++++..+
T Consensus 107 ~~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 107 DLPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp SCCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hCCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999989999999999999887 688999999999999999999875
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-14 Score=141.72 Aligned_cols=113 Identities=16% Similarity=0.141 Sum_probs=96.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~ 285 (629)
..+.+.+.+.+...++ .+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++. ++.+.+.|...++++++
T Consensus 20 ~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~ 93 (261)
T 3ege_A 20 IRIVNAIINLLNLPKG--SVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDK 93 (261)
T ss_dssp HHHHHHHHHHHCCCTT--CEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTT
T ss_pred HHHHHHHHHHhCCCCC--CEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCC
Confidence 4567777777765444 4999999999999999998765 4567799999999887765 89999999999999999
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+||+|+|..+++|+. ++..+++++.|+|| ||++++..+.
T Consensus 94 ~fD~v~~~~~l~~~~-~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 94 SVDGVISILAIHHFS-HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp CBSEEEEESCGGGCS-SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CEeEEEEcchHhhcc-CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 999999999998885 89999999999999 9988887653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-14 Score=138.71 Aligned_cols=135 Identities=13% Similarity=0.035 Sum_probs=99.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC-----CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV-----PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~-----~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
..+|||+|||+|.++..|++.+. ..++++|+++.+++.|+++.. ++.+...|...+++++++||+|++..+++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 45999999999999999998863 256788999999999998742 37788889888888888999999999998
Q ss_pred ccccC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 298 PWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 298 h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
|+... ...+|.++.++|||||++++..+..... ..|...........+.+.++++..+|+.+
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---VILDDVDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---EEEETTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---ceecccCCcccCCHHHHHHHHHHcCCeEE
Confidence 88632 3479999999999999999976532210 00111111111134557777777777554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=137.92 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=87.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++ ..++.+.++|...+++++++||+|++..+++|
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 45899999999999999999865 466779999999999987 35789999999999998999999999999977
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEE
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+. ++..++.++.++|||||++++.
T Consensus 117 ~~-~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 117 VP-DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CT-THHHHHHHHHHHEEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHCCCCcEEEEE
Confidence 66 8889999999999999999987
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=135.42 Aligned_cols=112 Identities=22% Similarity=0.283 Sum_probs=94.8
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC--CeEEEEecCCCCCCCCCCe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV--PAMIGVISSKRLPYPARAF 287 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~--~~~~~v~d~~~Lp~pd~sF 287 (629)
..+.+++...++ .+|||+|||+|.++..+++.+.. .++++|+|+.+++.|+++.. ++.+.+.|...+++++++|
T Consensus 33 ~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 33 PALRAMLPEVGG--LRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHHSCCCTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhccccCC--CEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCc
Confidence 345666654444 48999999999999999998762 45677999999999998753 5888899998888888999
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
|+|++..+++|+. ++..+|.++.++|||||+++++.+.
T Consensus 109 D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 109 DLAYSSLALHYVE-DVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEeccccccc-hHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 9999999998876 8899999999999999999998753
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=134.87 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=99.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCccccccc-
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM- 301 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~- 301 (629)
+.+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++. ++.+..++...++ ++++||+|+|+.+++|+..
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 34899999999999999999866 4567799999999999873 4556677888888 7899999999999988863
Q ss_pred CHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhc-ceeec
Q 006834 302 YDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLC-WKKLI 363 (629)
Q Consensus 302 d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~-w~~v~ 363 (629)
+...+|.++.++|||||++++..+......... +.. .......+.+..+++..+ |+.+.
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDK-LAR--YYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT-TSC--EECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc-cch--hccCCCHHHHHHHHHhCCCcEEEE
Confidence 356899999999999999999876544222111 000 011123456777888877 76543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=134.50 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=93.2
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPA 284 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd 284 (629)
+...+...+...+ ..+|||+|||+|.++..|++.+. .++++|+++.+++.|+++. .++.+.++|...++ ++
T Consensus 39 ~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 39 HTQLLRLSLSSGA--VSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHTTTSS--EEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CS
T ss_pred HHHHHHHHcccCC--CCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CC
Confidence 3444544554433 34899999999999999999853 6678899999999999874 35889999998888 68
Q ss_pred CCeeEEEecCcccccccCH---HHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 285 RAFDMAHCSGCLIPWYMYD---GLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
++||+|+|+.+++|+. ++ ..++.++.++|||||+++++.+...
T Consensus 113 ~~fD~v~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 158 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLE-DMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158 (216)
T ss_dssp CCEEEEEEESCGGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCccEEEEccHHHhCC-CHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 8999999999998887 54 4689999999999999999876543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-14 Score=141.85 Aligned_cols=99 Identities=17% Similarity=0.062 Sum_probs=87.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC-CCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP-YPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp-~pd~sFDlV~~s~~ 295 (629)
+.+|||||||+|.++..|++.+. .++++|+|+.+++.|+++ + .++.+.++|...++ +++++||+|+|..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 45899999999999999999866 456779999999999876 2 35889999998887 78899999999999
Q ss_pred ccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++|+. ++..+|.++.++|||||++++..+
T Consensus 146 l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 146 LEWVA-DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhccc-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 98886 889999999999999999999865
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.8e-15 Score=158.10 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=108.6
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEE---EEecCCCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMI---GVISSKRLP 281 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~---~v~d~~~Lp 281 (629)
...+.+.+.+.+...++ .+|||||||+|.++..|++++. .++++|+|+.+++.|++++.+... ...+...++
T Consensus 92 ~~~~~~~l~~~~~~~~~--~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 166 (416)
T 4e2x_A 92 FAMLARDFLATELTGPD--PFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVR 166 (416)
T ss_dssp HHHHHHHHHHTTTCSSS--CEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC--CEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcc
Confidence 34456666666654444 4999999999999999999876 456679999999999988654332 223445566
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccC--cchhhhhHHHHHHHHHHHhcc
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWER--TKEDLKQEQDTIEDIAKRLCW 359 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~--~~e~l~~~~~~ie~l~~~l~w 359 (629)
+++++||+|++..+++|+. ++..+|+++.|+|||||++++..|..........|.. .........+.+..+++..+|
T Consensus 167 ~~~~~fD~I~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf 245 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIP-YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGF 245 (416)
T ss_dssp HHHCCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTE
T ss_pred cCCCCEEEEEECChHHhcC-CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCC
Confidence 7789999999999999997 8999999999999999999999875332111111111 011112234567788888887
Q ss_pred eee
Q 006834 360 KKL 362 (629)
Q Consensus 360 ~~v 362 (629)
+.+
T Consensus 246 ~~~ 248 (416)
T 4e2x_A 246 ELV 248 (416)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=140.27 Aligned_cols=109 Identities=13% Similarity=0.184 Sum_probs=92.0
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEE
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMA 290 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV 290 (629)
.+.+.+...++ .+|||||||+|.++..|++.+. .++++|+|+.|++.|+++..++.+.++|...+++ +++||+|
T Consensus 48 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v 121 (279)
T 3ccf_A 48 DLLQLLNPQPG--EFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAV 121 (279)
T ss_dssp HHHHHHCCCTT--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEE
T ss_pred HHHHHhCCCCC--CEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEE
Confidence 34444444333 4899999999999999999655 4567799999999999987778899999998887 5899999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++..+++|+. ++..+|.++.|+|||||++++..+.
T Consensus 122 ~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 122 FSNAMLHWVK-EPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp EEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcchhhhCc-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999997765 8899999999999999999998754
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=138.69 Aligned_cols=111 Identities=23% Similarity=0.400 Sum_probs=92.8
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCee
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFD 288 (629)
.+.+.+.++ .+.+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++.... +.+.|...+++++++||
T Consensus 45 ~~~l~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD 116 (260)
T 2avn_A 45 GSFLEEYLK----NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFE 116 (260)
T ss_dssp HHHHHHHCC----SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEE
T ss_pred HHHHHHhcC----CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEE
Confidence 444444443 244899999999999999999865 4567799999999999886533 78888988998899999
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+|++..+++|+..++..+|.++.++|||||.+++..++.
T Consensus 117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 999998888887678999999999999999999987643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-14 Score=131.21 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=86.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++..++.+...| +++++++||+|++..+++|+. +
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~-~ 90 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMD-D 90 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCS-C
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhccc-C
Confidence 34899999999999999999863 6778899999999999987778888877 778889999999999998886 8
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 303 DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+..+++++.|+|||||++++..+.
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~ 114 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWR 114 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 899999999999999999998643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=135.08 Aligned_cols=128 Identities=16% Similarity=0.065 Sum_probs=97.6
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC------CeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV------PAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~------~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
.+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++.. ++.+.++|...++ ++++||+|++..+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 4899999999999999988654 46777999999999998643 3889999988877 456999999999998
Q ss_pred cccc-CHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 298 PWYM-YDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 298 h~~~-d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
|+.. +...++.++.++|||||++++...+.........|. ...+.+.++++..+|+.+
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~Gf~~~ 202 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYK-------VDVSTFEEVLVPIGFKAV 202 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCC-------CCHHHHHHHHGGGTEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCcc-------CCHHHHHHHHHHcCCeEE
Confidence 8754 367899999999999999999875443221111121 123456777777777554
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=138.94 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=86.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecC-cccccc-
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSG-CLIPWY- 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~-~L~h~~- 300 (629)
..+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++..++.+.++|...+++ +++||+|+|.. +++|+.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence 45899999999999999999876 4567799999999999987789999999998887 78999999998 898875
Q ss_pred -cCHHHHHHHHHhcccCCcEEEEEe
Q 006834 301 -MYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 301 -~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+...+|.++.++|||||+|++..
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 245679999999999999999973
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=133.02 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=86.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-CCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
.+|||+|||+|.++..|++.+. .++++|+++.+++.|++.+ .++.+.++|...+ +++++||+|+|+.+++|+...
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~ 123 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDD 123 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHH
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHH
Confidence 3899999999999999999865 4567799999999999877 6789999998887 788999999999999888732
Q ss_pred -HHHHHHHHHhcccCCcEEEEEeC
Q 006834 303 -DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 303 -~~~~L~el~RvLKPGG~liis~P 325 (629)
...+|+++.++|||||.+++..+
T Consensus 124 ~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 124 RFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 27899999999999999999875
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=140.02 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-------CCCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-------GVPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-------g~~~~~~v~d~~ 278 (629)
..+.+.|.++... ...+|||||||+|.++..|++.......++++|+|+.+++.|+++ ..++.+.++|..
T Consensus 23 ~~~~~~l~~~~~~---~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 23 SDFYKMIDEYHDG---ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHHCCS---CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHHhcC---CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 4556666666442 345899999999999999996321223567789999999999876 457999999999
Q ss_pred CCCCCC------CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPA------RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd------~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+++++ ++||+|+|+.+++|+ ++..++.++.|+|||||.|++..
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEEe
Confidence 988877 899999999999777 89999999999999999999853
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=133.56 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=85.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +.++.+.+.|...+++++++||+|+++.++++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 45899999999999999999876 567779999999999875 36789999999888888889999999988433
Q ss_pred cc-cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WY-MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~-~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. .+...++.++.++|||||.+++..+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 32 2467899999999999999999865
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=131.52 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=94.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC---CeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV---PAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~---~~~~~v~d~~~Lp~ 282 (629)
....+.+.+++.. ...+.+|||+|||+|.++..+++... ...++++|+|+.+++.|+++.. ++.+.++|...+++
T Consensus 29 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 106 (234)
T 3dtn_A 29 DDFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF 106 (234)
T ss_dssp HHHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCC
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCC
Confidence 4445666666653 22345999999999999999999843 2256777999999999998743 68899999999888
Q ss_pred CCCCeeEEEecCcccccccCHH--HHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYDG--LYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~--~~L~el~RvLKPGG~liis~P 325 (629)
+ ++||+|++..+++|+. ++. .+++++.|+|||||.+++..+
T Consensus 107 ~-~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 107 E-EKYDMVVSALSIHHLE-DEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp C-SCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-CCceEEEEeCccccCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7 8999999999998886 443 599999999999999999864
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-13 Score=129.84 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=90.7
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCC--CCCCCCCe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR--LPYPARAF 287 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~--Lp~pd~sF 287 (629)
+.+.+.+. ....+|||+|||+|.++..+++.+. .++++|+++.+++.|+++.. .+...|... +++++++|
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCE
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCcc
Confidence 34555554 2345899999999999999999853 56778999999999987753 567777765 66778999
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
|+|++..+++|+. ++..++.++.++|+|||++++..|...
T Consensus 95 D~v~~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 95 DCVIFGDVLEHLF-DPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp EEEEEESCGGGSS-CHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred CEEEECChhhhcC-CHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9999999998887 788999999999999999999987543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=138.09 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=95.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
..+.+.+.+.+... ..+.+|||+|||+|.++..|++.......++++|+|+.+++.|+++ +.++.+.+.|...++
T Consensus 7 ~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 85 (284)
T 3gu3_A 7 DDYVSFLVNTVWKI-TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 85 (284)
T ss_dssp HHHHHHHHHTTSCC-CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred hHHHHHHHHHHhcc-CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC
Confidence 34555555554321 2244999999999999999998743323567889999999999875 336889999999888
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++ ++||+|++..+++|+. ++..++.++.++|||||++++..|.
T Consensus 86 ~~-~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 LN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cC-CCeeEEEECChhhcCC-CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 74 6999999999998876 8899999999999999999999876
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=140.19 Aligned_cols=103 Identities=10% Similarity=-0.046 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCCchHHHH----HHHcCCcE-eEEEeecCcHHHHHHHHHc-----CC-CeEE--EEecCCCCC------C
Q 006834 222 NIRTAVDTGCGVASWGAY----LLKRDILT-MSFARRDTHEAQVQFALER-----GV-PAMI--GVISSKRLP------Y 282 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~----La~~g~~~-v~i~gvDiS~~~i~~A~er-----g~-~~~~--~v~d~~~Lp------~ 282 (629)
.+.+|||||||+|.++.. ++.++..+ +.++++|+|++|++.|+++ +. ++.+ ...+...++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 345899999999976654 33333222 1347889999999999875 22 3444 344444333 5
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++++||+|+|+.+++|+. ++..+|++++|+|||||+|++..+
T Consensus 132 ~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp CCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeecC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 688999999999997776 899999999999999999999754
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=134.47 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=95.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
..+.+.+.+++........+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++ +.++.+.+.|...++
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 97 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN 97 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC
Confidence 4556666666654322345999999999999999999875 466779999999999876 336888999988888
Q ss_pred CCCCCeeEEEecC-cccccc--cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSG-CLIPWY--MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~-~L~h~~--~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++ ++||+|++.. +++|+. .+...+|.++.++|||||.+++..+.
T Consensus 98 ~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 98 IN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp CS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 77 8999999998 998884 24678999999999999999998654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.44 E-value=8.1e-13 Score=127.57 Aligned_cols=99 Identities=17% Similarity=0.124 Sum_probs=84.1
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~ 300 (629)
+|||+|||+|.++..|++.+. .++++|+++.+++.|+++ +.++.+.+.|...+++++++||+|+++.. |+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cCC
Confidence 899999999999999999865 566779999999999876 45788999999888888899999999643 443
Q ss_pred -cCHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 301 -MYDGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 301 -~d~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
.+...++.++.++|||||++++..+...
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 2467899999999999999999886543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=136.43 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~ 278 (629)
...++.+.+.+...++. +|||||||+|.++..+++ .+. .++++|+|+.+++.|+++ + .++.+...|..
T Consensus 50 ~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 124 (287)
T 1kpg_A 50 IAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE 124 (287)
T ss_dssp HHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh
Confidence 33455666666554444 999999999999999994 454 567779999999999876 2 36788888887
Q ss_pred CCCCCCCCeeEEEecCcccccc-cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWY-MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~-~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
.+| ++||+|++..+++|+. .+...++.++.|+|||||.+++..+.
T Consensus 125 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 125 QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 665 7899999999999986 36789999999999999999998653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.9e-13 Score=137.77 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=92.6
Q ss_pred HHHHHhhcC-ccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCC
Q 006834 209 IDNINELIP-LTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRL 280 (629)
Q Consensus 209 i~~I~~lL~-~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~L 280 (629)
.+.+.+.+. ..+ +.+|||+|||+|.++..|+++ +. .++++|+++.+++.|+++ + .++.+.++|...+
T Consensus 105 ~~~l~~~l~~~~~--~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 179 (312)
T 3vc1_A 105 AEFLMDHLGQAGP--DDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT 179 (312)
T ss_dssp HHHHHTTSCCCCT--TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHhccCCC--CCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC
Confidence 345556655 333 349999999999999999987 54 456779999999999875 3 2589999999999
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++++++||+|++..+++|+ +...+|.++.|+|||||++++..+
T Consensus 180 ~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 180 PFDKGAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp CCCTTCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999999999999887 488999999999999999999874
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=130.33 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=93.4
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLP 281 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp 281 (629)
...+.+.+.+.+. ...+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++. .++.+.+.|...++
T Consensus 29 ~~~~~~~l~~~~~----~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~ 102 (215)
T 2pxx_A 29 FSSFRALLEPELR----PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD 102 (215)
T ss_dssp HHHHHHHHGGGCC----TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC
T ss_pred HHHHHHHHHHhcC----CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC
Confidence 3445555555542 2348999999999999999998763 4677799999999999874 46888999998888
Q ss_pred CCCCCeeEEEecCcccccc--------------cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIPWY--------------MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~--------------~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++++||+|++..+++++. .+...++.++.++|||||.+++..+.
T Consensus 103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 8889999999988886553 13468999999999999999999754
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=123.85 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=86.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEec-Cccccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCS-GCLIPWYM 301 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s-~~L~h~~~ 301 (629)
..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++..++.+...|...+++++++||+|++. .+++|...
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH
T ss_pred CCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh
Confidence 44899999999999999999865 466779999999999998877899999998888888999999998 66766532
Q ss_pred -CHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 302 -YDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 302 -d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+...++.++.++|+|||.+++..+.
T Consensus 124 ~~~~~~l~~~~~~l~~~G~l~~~~~~ 149 (195)
T 3cgg_A 124 DGREPALANIHRALGADGRAVIGFGA 149 (195)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2467999999999999999998654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-13 Score=134.99 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=95.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
..+.+.+.......+ +.+|||||||+|.++..+++.+.. ..++++|+++.+++.|+++ + .++.+...|...+
T Consensus 23 ~~l~~~l~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 99 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPP--GAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99 (276)
T ss_dssp CHHHHHHHTTCCCCT--TCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC
T ss_pred HHHHHHHhhcccCCC--CCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC
Confidence 334444444443333 349999999999999999998532 2567789999999999875 3 3688999999999
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++++++||+|++..+++|+. ++..++.++.++|||||++++..+.
T Consensus 100 ~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 100 PFEDSSFDHIFVCFVLEHLQ-SPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp CSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCCeeEEEEechhhhcC-CHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999999999999998886 8889999999999999999998754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=130.45 Aligned_cols=102 Identities=24% Similarity=0.287 Sum_probs=88.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----C------CeEEEEecCCCCCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----V------PAMIGVISSKRLPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~------~~~~~v~d~~~Lp~pd~sFDlV~~ 292 (629)
..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++. . ++.+.+.+...+++++++||+|++
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 44899999999999999999966 4567799999999999853 2 368888999999998999999999
Q ss_pred cCcccccccCHH---HHHHHHHhcccCCcEEEEEeCCCC
Q 006834 293 SGCLIPWYMYDG---LYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 293 s~~L~h~~~d~~---~~L~el~RvLKPGG~liis~P~~~ 328 (629)
..+++|+. ++. .+++++.++|||||++++..+...
T Consensus 108 ~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 108 QAFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp ESCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cchhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 99998886 655 899999999999999999876443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-13 Score=126.05 Aligned_cols=108 Identities=17% Similarity=0.273 Sum_probs=88.7
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARA 286 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~s 286 (629)
+.+.+...++ .+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +. ++.+...|...+++ +++
T Consensus 24 l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 97 (199)
T 2xvm_A 24 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ 97 (199)
T ss_dssp HHHHTTTSCS--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC
T ss_pred HHHHhhccCC--CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC
Confidence 4444544433 4899999999999999999865 456779999999999864 33 68899999988887 789
Q ss_pred eeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 287 FDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 287 FDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
||+|++..+++|+.. +...++.++.++|||||++++..+
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 999999999988753 467899999999999999888653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-13 Score=128.99 Aligned_cols=109 Identities=20% Similarity=0.167 Sum_probs=86.5
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC---CCC-CCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL---PYP-ARA 286 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L---p~p-d~s 286 (629)
.+.+.+....+ .+|||+|||+|.++..|++.+. .++++|+++.+++.|+++ ....+...+...+ ++. +++
T Consensus 43 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~ 116 (227)
T 3e8s_A 43 AILLAILGRQP--ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKD 116 (227)
T ss_dssp HHHHHHHHTCC--SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCC
T ss_pred HHHHHhhcCCC--CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCC
Confidence 34444443333 4899999999999999999866 456779999999999988 4566667666555 544 445
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
||+|+|..+++ ..++..++.++.++|||||++++..+..
T Consensus 117 fD~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 117 YDLICANFALL--HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp EEEEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ccEEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 99999999996 4588999999999999999999988643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=128.99 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=98.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+.+|||+|||+|.++..+++. +++|+++.+++.|+++ ++.+...+...+++++++||+|++..+++|+. +
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVD-D 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS-C
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhcc-C
Confidence 348999999999999988775 5669999999999988 57788889888898889999999999998875 8
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCCCccc--cc----cCccCcchhhhhHHHHHHHHHHHhcceeec
Q 006834 303 DGLYLLEVDRVLRPGGYWILSGPPIHWKK--YW----RGWERTKEDLKQEQDTIEDIAKRLCWKKLI 363 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG~liis~P~~~w~~--~~----~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 363 (629)
+..+|.++.++|+|||++++..++..... .. .+............+.+.++++..+|+.+.
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 89999999999999999999876442110 00 000000001112345677778888876543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=135.64 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=90.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~ 278 (629)
...++.+.+.+...++. +|||||||+|.++..+++. +. .++++|+|+.+++.|+++ +. ++.+...|..
T Consensus 58 ~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 132 (302)
T 3hem_A 58 YAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE 132 (302)
T ss_dssp HHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG
T ss_pred HHHHHHHHHHcCCCCcC--EEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH
Confidence 34455666666555544 9999999999999999988 64 567779999999999876 32 4888888887
Q ss_pred CCCCCCCCeeEEEecCccccccc--------CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYM--------YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~--------d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+ +++||+|++..+++|+.+ +...++.++.++|||||.+++..+
T Consensus 133 ~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 133 EF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred Hc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 66 689999999999988852 126899999999999999999764
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-13 Score=130.53 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=84.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecC-cccccc-
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSG-CLIPWY- 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~-~L~h~~- 300 (629)
..+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++..++.+...|...+++ +++||+|+|.. +++|+.
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 45899999999999999999865 4677799999999999987778999999988887 68999999755 787764
Q ss_pred -cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 301 -MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 301 -~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+...+|.++.++|||||.+++..+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 2356799999999999999999854
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=134.80 Aligned_cols=101 Identities=16% Similarity=0.043 Sum_probs=83.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC------CeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV------PAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~------~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+|||||||+|.++..|+........++++|+|+.+++.|+++.. ++.+.++|...++++ ++||+|+++.++
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~ 197 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLN 197 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSG
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChh
Confidence 4589999999999999986332223367788999999999997632 288999999999987 999999999999
Q ss_pred cccccCHHH---HHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWYMYDGL---YLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~~d~~~---~L~el~RvLKPGG~liis~P 325 (629)
+|+. ++.. ++.++.++|||||++++...
T Consensus 198 ~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 198 IYEP-DDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp GGCC-CHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred hhcC-CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8886 5443 89999999999999999863
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=125.79 Aligned_cols=134 Identities=12% Similarity=0.049 Sum_probs=96.8
Q ss_pred CCeeeecCCCCCCCCchHHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 189 GHRFRFPGGGTTFPNGADAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
|..+..|. ..+....+...+.+.+.+... ...+.+|||+|||+|.++..+++++.. .++++|+++.+++.|+++
T Consensus 12 g~~l~~~~--~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~ 87 (189)
T 3p9n_A 12 GRRIAVPP--RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNI 87 (189)
T ss_dssp TCEEECCS--CCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHH
T ss_pred CcEecCCC--CCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHH
Confidence 34455554 223344555666666655431 123448999999999999988887653 467779999999999875
Q ss_pred ---C-CCeEEEEecCCCCC--CCCCCeeEEEecCcccccccCHHHHHHHHHh--cccCCcEEEEEeCC
Q 006834 267 ---G-VPAMIGVISSKRLP--YPARAFDMAHCSGCLIPWYMYDGLYLLEVDR--VLRPGGYWILSGPP 326 (629)
Q Consensus 267 ---g-~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~L~h~~~d~~~~L~el~R--vLKPGG~liis~P~ 326 (629)
+ .++.+.++|...++ +++++||+|++...+++...+...++.++.+ +|+|||.+++..+.
T Consensus 88 ~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 88 EALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred HHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 3 36889988877654 4578999999988875543457789999999 99999999998753
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.5e-13 Score=142.52 Aligned_cols=102 Identities=21% Similarity=0.094 Sum_probs=88.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------C----CCeEEEEecCCCC------CCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------G----VPAMIGVISSKRL------PYP 283 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g----~~~~~~v~d~~~L------p~p 283 (629)
+.+|||+|||+|.++..|++.......++++|+|+.+++.|+++ | .++.+.++|...+ +++
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 44899999999999999988631123567789999999999976 4 5789999999887 889
Q ss_pred CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++||+|+++.+++|+. ++..+|.++.|+|||||+|+++.+
T Consensus 164 ~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLST-NKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEccchhcCC-CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999999999997776 889999999999999999999864
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-12 Score=119.34 Aligned_cols=134 Identities=15% Similarity=0.145 Sum_probs=99.3
Q ss_pred ecCCeeeecCCCCCCCCc-hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH
Q 006834 187 VEGHRFRFPGGGTTFPNG-ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE 265 (629)
Q Consensus 187 ~~g~~~~Fpgggt~f~~g-a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e 265 (629)
+.+..+.|......|... .+...+.+.+.+...++ .+|||+|||+|.++..+++.+. .++++|+++.+++.|++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~ 92 (194)
T 1dus_A 18 LRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKD--DDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKE 92 (194)
T ss_dssp ETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTT--CEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHH
T ss_pred cCCCceEEEeCCCcCCccccchHHHHHHHHcccCCC--CeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHH
Confidence 445555553333334322 33566677777765544 4899999999999999998844 56777999999999987
Q ss_pred c----CCC---eEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 266 R----GVP---AMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 266 r----g~~---~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+ +.+ +.+...|... ++++++||+|+++..+++...+...++.++.++|+|||.+++..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 93 NIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp HHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred HHHHcCCCccceEEEECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 5 332 8888888766 4457799999998887543335678999999999999999998653
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=148.23 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=98.1
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----------C-CCeEEE
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----------G-VPAMIG 273 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----------g-~~~~~~ 273 (629)
....++.+.+.+....+. +|||||||+|.++..|++.+.....++|+|+|+.|++.|+++ + .++.+.
T Consensus 706 ~eqRle~LLelL~~~~g~--rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefi 783 (950)
T 3htx_A 706 SKQRVEYALKHIRESSAS--TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLY 783 (950)
T ss_dssp HHHHHHHHHHHHHHSCCS--EEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEE
T ss_pred HHHHHHHHHHHhcccCCC--EEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEE
Confidence 345566666666554444 999999999999999999873223567789999999999872 2 358899
Q ss_pred EecCCCCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCCCCc
Q 006834 274 VISSKRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHW 329 (629)
Q Consensus 274 v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w 329 (629)
++|...+++++++||+|+|..+++|+.+. ...++.++.|+|||| .+++++|+..+
T Consensus 784 qGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey 839 (950)
T 3htx_A 784 DGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF 839 (950)
T ss_dssp ESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred ECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence 99999999999999999999999998732 235899999999999 88888886644
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=127.10 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=84.0
Q ss_pred CCeEEEeCCCCchH-HHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASW-GAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~-a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
..+|||+|||+|.+ ...++..+. .++++|+|+.+++.|+++ +.++.+.+.|...+++++++||+|++..+++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 34899999999987 445555554 466779999999999865 4568888999999998889999999999998
Q ss_pred ccc-cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWY-MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~-~d~~~~L~el~RvLKPGG~liis~P 325 (629)
|+. .+...++.++.++|||||++++..+
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 884 3567899999999999999999874
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-13 Score=137.26 Aligned_cols=103 Identities=9% Similarity=-0.014 Sum_probs=78.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CC-------eEEEEecC------CCC--CCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VP-------AMIGVISS------KRL--PYP 283 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~-------~~~~v~d~------~~L--p~p 283 (629)
+.+|||||||+|..+..++..+.. .++|+|+|+.|++.|+++. .. +.|.+.+. ..+ +++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 458999999999866666665432 4677899999999999762 21 45666665 323 356
Q ss_pred CCCeeEEEecCcccccc--cCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 284 ARAFDMAHCSGCLIPWY--MYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~--~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+++||+|+|..++++.. .+...+|+++.|+|||||+|++++|+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 78999999999986542 245789999999999999999997643
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=135.13 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=91.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~ 278 (629)
...++.+.+.+...++. +|||||||+|.++..+++. +. .++++|+|+.+++.|+++ + ..+.+...|..
T Consensus 76 ~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 150 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 150 (318)
T ss_dssp HHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH
Confidence 34455666666554444 9999999999999999987 55 566779999999999876 3 24788888887
Q ss_pred CCCCCCCCeeEEEecCcccccc-cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWY-MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~-~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
.++ ++||+|++..+++|+. .+...++.++.++|||||.+++..+.
T Consensus 151 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 151 DFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp GCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 765 7899999999998885 36788999999999999999998753
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-13 Score=133.40 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCC-
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRL- 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~L- 280 (629)
..+.+.+.+.+.. .+.+|||||||+|..+..+++..+. .++++|+|+.+++.|+++ +..+.+..++...+
T Consensus 47 ~~~m~~~a~~~~~---~G~rVLdiG~G~G~~~~~~~~~~~~--~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~ 121 (236)
T 3orh_A 47 TPYMHALAAAASS---KGGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEECCTTSHHHHHHTTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHhhcc---CCCeEEEECCCccHHHHHHHHhCCc--EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhc
Confidence 4455666666543 2458999999999999999987543 578899999999999975 34566776665443
Q ss_pred -CCCCCCeeEEEe-----cCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 281 -PYPARAFDMAHC-----SGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 281 -p~pd~sFDlV~~-----s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
++++++||.|++ ...+.|.. +...++.++.|+|||||.|++.
T Consensus 122 ~~~~~~~FD~i~~D~~~~~~~~~~~~-~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 122 PTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccCCceEEEeeeecccchhhhc-chhhhhhhhhheeCCCCEEEEE
Confidence 578899999985 34444554 5778999999999999999875
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-13 Score=137.02 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=84.9
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---C-----------------
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---V----------------- 268 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~----------------- 268 (629)
.+.+.+++......+.+|||||||+|.++..++..+.. .++++|+|+.|++.|+++. .
T Consensus 42 ~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~--~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~ 119 (263)
T 2a14_A 42 LECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEG 119 (263)
T ss_dssp HHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhc--ceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCC
Confidence 34455554332333458999999999888777777653 5788899999999988631 0
Q ss_pred --------------Ce-EEEEecCCCC-CC---CCCCeeEEEecCcccccccC---HHHHHHHHHhcccCCcEEEEEeC
Q 006834 269 --------------PA-MIGVISSKRL-PY---PARAFDMAHCSGCLIPWYMY---DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 269 --------------~~-~~~v~d~~~L-p~---pd~sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKPGG~liis~P 325 (629)
.+ .+.++|.... |+ ..++||+|+++.+++|...+ ...++.++.|+|||||+|++++.
T Consensus 120 ~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 120 NSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp CGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 12 2677787663 43 35799999999999886433 46799999999999999999863
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=123.68 Aligned_cols=99 Identities=16% Similarity=0.058 Sum_probs=76.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCC-CCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLP-YPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp-~pd~sFDlV~~s~~L 296 (629)
+.+|||+|||+|.++..|++++. .++++|+|+.+++.|+++ + .++.+.+.+...++ +.+++||+|+++...
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 44899999999999999999854 456779999999999875 3 46788876666653 557899999987433
Q ss_pred ccc--------ccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPW--------YMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~--------~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+. ..+...++.++.++|||||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence 232 1234568999999999999999985
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-13 Score=131.59 Aligned_cols=113 Identities=13% Similarity=0.058 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCC-
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRL- 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~L- 280 (629)
..+.+.+.+.+.. ...+|||||||+|.++..|++.+.. .++++|+|+.|++.|+++. .++.+.++|...+
T Consensus 47 ~~~~~~l~~~~~~---~~~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 47 TPYMHALAAAASS---KGGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHhhcCC---CCCeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhh
Confidence 4455555555422 2448999999999999999876542 5788899999999999863 5688888888887
Q ss_pred -CCCCCCeeEEEe-cCccccccc----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 -PYPARAFDMAHC-SGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 -p~pd~sFDlV~~-s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~ 324 (629)
++++++||+|++ .+.+ +... +...++.++.|+|||||+|++..
T Consensus 122 ~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 888999999999 5554 2221 13467999999999999999864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=7.7e-13 Score=135.67 Aligned_cols=115 Identities=18% Similarity=0.109 Sum_probs=81.3
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC-------------------
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV------------------- 268 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~------------------- 268 (629)
....+.+.+......+.+|||||||+|.++..++.... ..++++|+|+.|++.|+++..
T Consensus 57 ~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~ 134 (289)
T 2g72_A 57 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE 134 (289)
T ss_dssp HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhc
Confidence 34555555543222345899999999995443433222 256778999999999887311
Q ss_pred ----------------CeEEEEecCCC-CCC-----CCCCeeEEEecCccccccc---CHHHHHHHHHhcccCCcEEEEE
Q 006834 269 ----------------PAMIGVISSKR-LPY-----PARAFDMAHCSGCLIPWYM---YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 269 ----------------~~~~~v~d~~~-Lp~-----pd~sFDlV~~s~~L~h~~~---d~~~~L~el~RvLKPGG~liis 323 (629)
...+..+|... +|+ ++++||+|+|+.+++|... ++..+|.++.|+|||||+|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 135 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 03455567766 654 3567999999999977433 4678999999999999999997
Q ss_pred e
Q 006834 324 G 324 (629)
Q Consensus 324 ~ 324 (629)
.
T Consensus 215 ~ 215 (289)
T 2g72_A 215 G 215 (289)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.2e-12 Score=130.49 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=84.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++ +.++.+.+.|...+++ +++||+|+|+.+++|
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 34899999999999999999976 456779999999999865 4578999999988877 789999999999988
Q ss_pred cccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
+... ...++.++.++|||||++++...
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7533 46899999999999999888653
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=125.41 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=90.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
..+.+.+.+.++. ..+|||+|||+|.++..+++. . .++++|+|+.+++.|+++ +.++.+.+.|...++
T Consensus 21 ~~~~~~~~~~~~~----~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 21 PEWVAWVLEQVEP----GKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHSCT----TCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHcCC----CCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC
Confidence 4456666666543 248999999999999999887 3 567779999999999875 456889999988888
Q ss_pred CCCCCeeEEEecC-cccccc--cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSG-CLIPWY--MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~-~L~h~~--~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++ ++||+|++.. +++|+. .+...+++++.++|||||.+++..+.
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 76 8999999986 887774 23567999999999999999998653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=132.36 Aligned_cols=115 Identities=11% Similarity=0.002 Sum_probs=90.2
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--------CCeEEEEecCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--------VPAMIGVISSK 278 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--------~~~~~~v~d~~ 278 (629)
.....+.+.+... ..+|||||||+|.++..|++.+.. ++++|+|+.+++.|+++. .++.+.++|..
T Consensus 70 ~~~~~~~~~~~~~---~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 70 SEAREFATRTGPV---SGPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHCCC---CSCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHHhhCCC---CCcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 3445555555432 237999999999999999999764 566699999999998762 46899999999
Q ss_pred CCCCCCCCeeEEEecCcccccccC--HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
.+++ +++||+|+|+....|+... ...+|+++.++|||||+|++..+...
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 9887 6899999986554455422 46899999999999999999976544
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-12 Score=130.37 Aligned_cols=111 Identities=14% Similarity=-0.047 Sum_probs=84.9
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCC-----
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPY----- 282 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~----- 282 (629)
.++.+.+.+...++. +|||+|||+|.++..|++++.. ++++|+|+.|++.|+++.... +...+...++.
T Consensus 33 ~~~~il~~l~l~~g~--~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 33 DRENDIFLENIVPGS--TVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKE 106 (261)
T ss_dssp HHHHHHHTTTCCTTC--EEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGG
T ss_pred HHHHHHHhcCCCCcC--EEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccc
Confidence 455666666655554 9999999999999999999764 566799999999999875322 22333333332
Q ss_pred CCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
.+++||+|+++.+++|+..+ ...++.++.++| |||.++++.+
T Consensus 107 ~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 25789999999999887533 467999999999 9999999864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-12 Score=120.50 Aligned_cols=138 Identities=17% Similarity=0.048 Sum_probs=95.8
Q ss_pred CCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCC-eEEEEe
Q 006834 201 FPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVP-AMIGVI 275 (629)
Q Consensus 201 f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~-~~~~v~ 275 (629)
|..+.......+.+.+......+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ +.. +.+...
T Consensus 39 f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~ 116 (205)
T 3grz_A 39 FGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAK--SVLATDISDESMTAAEENAALNGIYDIALQKT 116 (205)
T ss_dssp ---CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCCCEEEES
T ss_pred cCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEec
Confidence 3333344444444444321223448999999999999999987542 567789999999999875 333 788887
Q ss_pred cCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHH
Q 006834 276 SSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAK 355 (629)
Q Consensus 276 d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~ 355 (629)
|... +.+++||+|+++..+++ ...++.++.++|||||+++++..... ....+.+.++
T Consensus 117 d~~~--~~~~~fD~i~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------~~~~~~~~~~ 173 (205)
T 3grz_A 117 SLLA--DVDGKFDLIVANILAEI----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------QLPKIEQALA 173 (205)
T ss_dssp STTT--TCCSCEEEEEEESCHHH----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------GHHHHHHHHH
T ss_pred cccc--cCCCCceEEEECCcHHH----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------cHHHHHHHHH
Confidence 7755 34689999999887744 36789999999999999999743211 1334666777
Q ss_pred Hhcceeec
Q 006834 356 RLCWKKLI 363 (629)
Q Consensus 356 ~l~w~~v~ 363 (629)
..+|+.+.
T Consensus 174 ~~Gf~~~~ 181 (205)
T 3grz_A 174 ENSFQIDL 181 (205)
T ss_dssp HTTEEEEE
T ss_pred HcCCceEE
Confidence 77776643
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=130.72 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=83.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CC------------------------------
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VP------------------------------ 269 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~------------------------------ 269 (629)
.+.+|||+|||+|.++..+++.+. ..++++|+|+.+++.|+++. .+
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 345899999999999999988865 35678899999999998752 11
Q ss_pred --e-EEEEecCCCCC-CCC---CCeeEEEecCccccccc---CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 270 --A-MIGVISSKRLP-YPA---RAFDMAHCSGCLIPWYM---YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 270 --~-~~~v~d~~~Lp-~pd---~sFDlV~~s~~L~h~~~---d~~~~L~el~RvLKPGG~liis~P 325 (629)
+ .+.++|....+ +++ ++||+|+|..++++... +...++.++.++|||||+|++..+
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 5 78888887764 355 89999999999974443 467899999999999999999874
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-12 Score=133.62 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=87.3
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------------CCeEEEEec
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------------VPAMIGVIS 276 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------------~~~~~~v~d 276 (629)
++.+.+.+........+|||+|||+|.++..+++.+. ..++++|+|+.+++.|+++. .++.+.++|
T Consensus 21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D 98 (313)
T 3bgv_A 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD 98 (313)
T ss_dssp HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence 3444444333212345899999999999999998643 25678899999999998752 257889999
Q ss_pred CCCCC----CC--CCCeeEEEecCcccccccC---HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 277 SKRLP----YP--ARAFDMAHCSGCLIPWYMY---DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 277 ~~~Lp----~p--d~sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKPGG~liis~P~ 326 (629)
...++ ++ +++||+|+|+.++++...+ ...+|.++.++|||||+|+++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 88876 53 4599999999999555233 468999999999999999998753
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=129.99 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=84.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCC-CCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPY-PARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~-pd~sFDlV~~s~~ 295 (629)
+.+|||+|||+|.++..+++.+.. .++++|+|+.+++.|+++. .++.+.++|...+++ ++++||+|+|..+
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCeEEEECCCCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 448999999999999999887642 4677799999999998762 247888999988888 5889999999999
Q ss_pred cccc---ccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 296 LIPW---YMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 296 L~h~---~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++|. ..+...+|.++.++|||||++++..|.
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 8663 224578999999999999999999753
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-12 Score=132.53 Aligned_cols=103 Identities=16% Similarity=0.065 Sum_probs=82.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----------------------------------
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------------------------------- 267 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------------------------------- 267 (629)
.+.+|||||||+|.++..|+++.. ...++++|+++.+++.|+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 345999999999999999998732 125678899999999998762
Q ss_pred -----------------------------CCeEEEEecCCCCC-----CCCCCeeEEEecCcccccc---c--CHHHHHH
Q 006834 268 -----------------------------VPAMIGVISSKRLP-----YPARAFDMAHCSGCLIPWY---M--YDGLYLL 308 (629)
Q Consensus 268 -----------------------------~~~~~~v~d~~~Lp-----~pd~sFDlV~~s~~L~h~~---~--d~~~~L~ 308 (629)
.++.|.++|....+ +.+++||+|+|..+++|++ . +...+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 25778888776543 5678999999999985553 1 3567999
Q ss_pred HHHhcccCCcEEEEEeC
Q 006834 309 EVDRVLRPGGYWILSGP 325 (629)
Q Consensus 309 el~RvLKPGG~liis~P 325 (629)
++.++|||||+|++...
T Consensus 205 ~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHEEEEEEEEEECC
T ss_pred HHHHHhCCCcEEEEecC
Confidence 99999999999999853
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.7e-12 Score=124.12 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=81.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++ +.++.+.++|...++++ ++||+|+|.....+
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchh
Confidence 34899999999999999999876 456779999999999865 45788999998888765 68999998754333
Q ss_pred c-c-cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 299 W-Y-MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 299 ~-~-~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+ . .+...++.++.++|||||.+++..|.
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 3 2 23567999999999999999998653
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-11 Score=133.59 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=92.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
..+.+.+.+.+......+.+|||+|||+|.++..+++++. .++++|+++.+++.|+++ +..+.+...|....+
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc
Confidence 4445555554431122345899999999999999999875 566779999999999865 456889999998887
Q ss_pred CCCCCeeEEEecCccccc----ccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIPW----YMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~----~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
.++++||+|+|+..+++. ..+...++.++.++|||||.++++.++
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 777899999999888552 223567999999999999999998643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-12 Score=125.65 Aligned_cols=112 Identities=11% Similarity=-0.020 Sum_probs=87.6
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC--CeEEEEecCCCCCCCC---
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV--PAMIGVISSKRLPYPA--- 284 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~--~~~~~v~d~~~Lp~pd--- 284 (629)
+.+..++.. .....+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++.. ++.+.++|...++...
T Consensus 45 ~~~~~~~~~-~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~ 120 (245)
T 3ggd_A 45 VDLPRFELL-FNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIH 120 (245)
T ss_dssp HHHHHHTTT-SCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHH
T ss_pred HHHHHHhhc-cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccc
Confidence 344444432 22344899999999999999999887 45667999999999998753 6889998887765432
Q ss_pred --CCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 285 --RAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 285 --~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
..||+|++..+++|+.. +...++.++.++|||||++++..+
T Consensus 121 ~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 121 SEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp HHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 34999999999977753 367899999999999999888754
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=127.47 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=91.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEE-EecCCCCC---CCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIG-VISSKRLP---YPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~-v~d~~~Lp---~pd~sFDlV~~s~~L~h 298 (629)
+.+|||+|||+|.++..|++++.. .++++|+|+.|++.+.++...+... ..+...++ ++..+||+|+|..++++
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga~--~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGAK--LVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred ccEEEecCCCccHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 448999999999999999998753 4577799999999977655444332 22333333 34456999999887754
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCC-Cccccc---cCccCcchhhhhHHHHHHHHHHHhccee
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPI-HWKKYW---RGWERTKEDLKQEQDTIEDIAKRLCWKK 361 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~-~w~~~~---~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 361 (629)
+ ..+|.++.|+|||||.|++...|. ...... .+.-+++.......+.+.+.+...+|..
T Consensus 164 l----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v 226 (291)
T 3hp7_A 164 L----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSV 226 (291)
T ss_dssp G----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEE
T ss_pred H----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 3 578999999999999999975332 111111 1233344445555666777777888854
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-12 Score=128.01 Aligned_cols=114 Identities=13% Similarity=0.049 Sum_probs=88.3
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHH------HHHHHHHc----C--CCeEEEE
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEA------QVQFALER----G--VPAMIGV 274 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~------~i~~A~er----g--~~~~~~v 274 (629)
....+.+.+...++. +|||||||+|.++..++++ +.. ..++++|+|+. +++.|+++ + .++.+..
T Consensus 31 ~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~ 107 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGE--KILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF 107 (275)
T ss_dssp HHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred HHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence 344555555554444 9999999999999999987 332 25677799987 88888865 2 3578888
Q ss_pred ec---CCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 275 IS---SKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 275 ~d---~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.| ...+|+++++||+|++..+++|+. ++..++..+.++++|||++++...
T Consensus 108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 108 NTNLSDDLGPIADQHFDRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp SCCTTTCCGGGTTCCCSEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CChhhhccCCCCCCCEEEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEEe
Confidence 87 556678889999999999998887 667777777777888999999864
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-12 Score=126.09 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=78.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecC-CCCCCC-CCCeeEEEecCcccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISS-KRLPYP-ARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~-~~Lp~p-d~sFDlV~~s~~L~h~~ 300 (629)
+.+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++..++.+.++|. ..+|++ +++||+|+++.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~------ 119 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR------ 119 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES------
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC------
Confidence 34899999999999999999865 45677999999999999987899999998 678888 89999999872
Q ss_pred cCHHHHHHHHHhcccCCcEEE
Q 006834 301 MYDGLYLLEVDRVLRPGGYWI 321 (629)
Q Consensus 301 ~d~~~~L~el~RvLKPGG~li 321 (629)
++..++.++.++|||||.++
T Consensus 120 -~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 -GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp -CCSGGGGGHHHHEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCCCcEEE
Confidence 55678999999999999999
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=124.85 Aligned_cols=96 Identities=23% Similarity=0.300 Sum_probs=81.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+.+|||+|||+|.++..+++... ...++++|+|+.+++.|+++..++.+.+.|...+++++++||+|++..+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~------ 158 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP------ 158 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC------
T ss_pred CCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh------
Confidence 44899999999999999998731 12467779999999999999888899999999999988999999987653
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 303 DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
.++.++.|+|||||.+++..|..
T Consensus 159 --~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 --CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp --CCHHHHHHHEEEEEEEEEEEECT
T ss_pred --hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24899999999999999997654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=6.7e-12 Score=122.46 Aligned_cols=119 Identities=12% Similarity=0.037 Sum_probs=87.3
Q ss_pred chHHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C---CCeEEEEe
Q 006834 204 GADAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G---VPAMIGVI 275 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g---~~~~~~v~ 275 (629)
..+.+.+.+.+.+... .+ .+|||+|||+|.++..++.++.. .++++|+|+.+++.|+++ + .++.+..+
T Consensus 36 ~~~~~~~~l~~~l~~~~~~--~~vLDlGcGtG~~~~~~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~ 111 (201)
T 2ift_A 36 TGDRVKETLFNWLMPYIHQ--SECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ 111 (201)
T ss_dssp --CHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS
T ss_pred CHHHHHHHHHHHHHHhcCC--CeEEEcCCccCHHHHHHHHccCC--EEEEEECCHHHHHHHHHHHHHhCCCccceEEEEC
Confidence 3445555555555432 33 38999999999999998887652 467779999999999875 3 36888888
Q ss_pred cCCCCC--CCCCC-eeEEEecCcccccccCHHHHHHHH--HhcccCCcEEEEEeCCCC
Q 006834 276 SSKRLP--YPARA-FDMAHCSGCLIPWYMYDGLYLLEV--DRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 276 d~~~Lp--~pd~s-FDlV~~s~~L~h~~~d~~~~L~el--~RvLKPGG~liis~P~~~ 328 (629)
|...+. +++++ ||+|++...+ +. .+...++.++ .|+|||||.++++..+..
T Consensus 112 d~~~~~~~~~~~~~fD~I~~~~~~-~~-~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 112 SSLDFLKQPQNQPHFDVVFLDPPF-HF-NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CHHHHTTSCCSSCCEEEEEECCCS-SS-CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CHHHHHHhhccCCCCCEEEECCCC-CC-ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 876643 23678 9999998875 32 2466788888 778999999999875443
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.3e-11 Score=114.42 Aligned_cols=113 Identities=13% Similarity=-0.049 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
+.....+.+.+...++. +|||+|||+|.++..+++.+.. ..++++|+++.+++.|+++ + .++.+...|....
T Consensus 26 ~~i~~~~l~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 102 (204)
T 3e05_A 26 QEVRAVTLSKLRLQDDL--VMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG 102 (204)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT
T ss_pred HHHHHHHHHHcCCCCCC--EEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 44445566666655544 9999999999999999998732 2567789999999999875 3 3588888887554
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
....++||+|++...+. +...++.++.++|||||.+++..+
T Consensus 103 ~~~~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 103 LDDLPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CTTSCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhcCCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 43447899999988763 677899999999999999999854
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=121.17 Aligned_cols=138 Identities=13% Similarity=0.096 Sum_probs=92.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHH----HH----cC-CCeEEEEecCCCCCCCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFA----LE----RG-VPAMIGVISSKRLPYPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A----~e----rg-~~~~~~v~d~~~Lp~pd~sFDlV~~s 293 (629)
+.+|||+|||+|.++..|+++... ..++++|+|+.|++.+ ++ .+ .++.+.++|...+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTT-EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 348999999999999999998532 3577889999988853 21 12 3689999999999988777 877743
Q ss_pred Ccc---c-ccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchh-hhhHHHHHHHHHHHhcceee
Q 006834 294 GCL---I-PWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKED-LKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 294 ~~L---~-h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~-l~~~~~~ie~l~~~l~w~~v 362 (629)
... + |...++..++.++.|+|||||.++++.....|............. .....+.+...+...+|+..
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 322 1 122366889999999999999999976544443322211111111 11122336667777777543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=114.49 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=83.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC-
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK- 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~- 278 (629)
+.....+.+.+...++ .+|||+|||+|.++..+++... ...++++|+++.+++.|+++ +. ++ +...+..
T Consensus 11 ~~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 11 QHVRALAISALAPKPH--ETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHHHCCCTT--EEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHHHhcccCC--CeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence 4445555666555444 4899999999999999998742 23677889999999999875 33 35 6666653
Q ss_pred CCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.++..+++||+|++..++++ ..++.++.++|||||.+++...
T Consensus 87 ~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 87 AFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred hhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 33433389999999998855 5689999999999999999854
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-11 Score=118.04 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=81.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCC--CCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLP--YPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~ 295 (629)
..+|||+|||+|.++..+++.... ..++++|+++.+++.|+++ + .++.+..+|...++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 348999999999999999988542 2567889999999999865 3 46889999988877 77889999999865
Q ss_pred cccccc--------CHHHHHHHHHhcccCCcEEEEEe
Q 006834 296 LIPWYM--------YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 296 L~h~~~--------d~~~~L~el~RvLKPGG~liis~ 324 (629)
. +|.. ....++.++.++|+|||.+++.+
T Consensus 121 ~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred C-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4 3331 12579999999999999999985
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-12 Score=116.98 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=88.8
Q ss_pred CCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEec
Q 006834 201 FPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVIS 276 (629)
Q Consensus 201 f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d 276 (629)
+......+.+.+.+.+......+.+|||+|||+|.++..+++.+.. ++++|+++.+++.|+++ +.++.+...|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d 96 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALP 96 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSC
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEecc
Confidence 3344556666666665432112348999999999999999998765 67779999999999865 3367888877
Q ss_pred CCCC-C-C--CCCCeeEEEecCcccccccCHHHHHHHHH--hcccCCcEEEEEeCCCC
Q 006834 277 SKRL-P-Y--PARAFDMAHCSGCLIPWYMYDGLYLLEVD--RVLRPGGYWILSGPPIH 328 (629)
Q Consensus 277 ~~~L-p-~--pd~sFDlV~~s~~L~h~~~d~~~~L~el~--RvLKPGG~liis~P~~~ 328 (629)
.... + . ..++||+|++...++ .+...++..+. ++|||||.++++.++..
T Consensus 97 ~~~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 97 VEVFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred HHHHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 6552 2 1 134899999988764 24556677777 99999999999876443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=117.75 Aligned_cols=109 Identities=15% Similarity=0.039 Sum_probs=88.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
......+.+.+...++. +|||+|||+|.++..|++.+. .++++|+++.+++.|+++ + .++.+..+|....
T Consensus 63 ~~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~ 137 (210)
T 3lbf_A 63 PYMVARMTELLELTPQS--RVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG 137 (210)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence 45566677777665544 999999999999999999854 456779999999999875 3 3588888888776
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+.++++||+|++..+++++.+ ++.++|||||++++..++
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~~-------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIPT-------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCCT-------HHHHTEEEEEEEEEEECS
T ss_pred CccCCCccEEEEccchhhhhH-------HHHHhcccCcEEEEEEcC
Confidence 666789999999999977762 689999999999999765
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.2e-11 Score=118.95 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=89.0
Q ss_pred CCCCchHHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEE
Q 006834 200 TFPNGADAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMI 272 (629)
Q Consensus 200 ~f~~ga~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~ 272 (629)
.|..+.+.. .+..++... ++. +|||+|||+|.++..+++++.. .++++|+++.+++.|+++ +. ++.+
T Consensus 30 ~~~~~~d~~--ll~~~~~~~~~~~--~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~ 103 (259)
T 3lpm_A 30 VFSFSIDAV--LLAKFSYLPIRKG--KIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEI 103 (259)
T ss_dssp TBCCCHHHH--HHHHHCCCCSSCC--EEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEE
T ss_pred CccCcHHHH--HHHHHhcCCCCCC--EEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEE
Confidence 344455533 455555544 444 8999999999999999998653 678889999999999875 32 4888
Q ss_pred EEecCCCCC--CCCCCeeEEEecCccccc-----c--------------cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 273 GVISSKRLP--YPARAFDMAHCSGCLIPW-----Y--------------MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 273 ~v~d~~~Lp--~pd~sFDlV~~s~~L~h~-----~--------------~d~~~~L~el~RvLKPGG~liis~P 325 (629)
..+|...++ +++++||+|+++..+.+. . .+...++.++.++|||||.+++..+
T Consensus 104 ~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 104 IEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp ECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 888887765 557899999997665333 0 0124689999999999999999854
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=116.05 Aligned_cols=132 Identities=12% Similarity=0.005 Sum_probs=94.2
Q ss_pred CeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---
Q 006834 190 HRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER--- 266 (629)
Q Consensus 190 ~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er--- 266 (629)
.++.+|.+. ......+.+.+.+.+.+... ..+.+|||+|||+|.++..+++++.. .++++|+++.+++.|+++
T Consensus 14 ~~~~~~~~~-~~rp~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~ 89 (187)
T 2fhp_A 14 RRLKALDGD-NTRPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAI 89 (187)
T ss_dssp CBCCCCCCC-SSCCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHH
T ss_pred ccccCCCCC-CcCcCHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHH
Confidence 334444332 33445667777777776431 12348999999999999999887532 567789999999999865
Q ss_pred -C--CCeEEEEecCCCC----CCCCCCeeEEEecCcccccccCHHHHHHHH--HhcccCCcEEEEEeCCC
Q 006834 267 -G--VPAMIGVISSKRL----PYPARAFDMAHCSGCLIPWYMYDGLYLLEV--DRVLRPGGYWILSGPPI 327 (629)
Q Consensus 267 -g--~~~~~~v~d~~~L----p~pd~sFDlV~~s~~L~h~~~d~~~~L~el--~RvLKPGG~liis~P~~ 327 (629)
+ .++.+..+|.... ++.+++||+|++...++ . ......+..+ .++|+|||.+++..+..
T Consensus 90 ~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 90 TKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-K-QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-G-CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred hCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC-c-hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 3 2478888886552 22367999999987753 2 2556777777 89999999999987644
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=115.09 Aligned_cols=113 Identities=9% Similarity=-0.014 Sum_probs=86.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+.+|||+|||+|.++..|++++ .++++|+|+.|++. ..++.+.++|... ++++++||+|+++..+++....
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCC
T ss_pred CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCcc
Confidence 3489999999999999999987 56777999999988 4457888888876 6667899999999888554322
Q ss_pred --------HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 303 --------DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 303 --------~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
...++.++.+.| |||.+++..+... ..+.+.++++..+|+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~-----------------~~~~l~~~l~~~gf~~~ 144 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN-----------------RPKEVLARLEERGYGTR 144 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG-----------------CHHHHHHHHHHTTCEEE
T ss_pred ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC-----------------CHHHHHHHHHHCCCcEE
Confidence 256889999999 9999999853211 12346666777777654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-11 Score=125.08 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=79.7
Q ss_pred CCeEEEeCCCCch----HHHHHHHc-CC-c-EeEEEeecCcHHHHHHHHHcC----------------------------
Q 006834 223 IRTAVDTGCGVAS----WGAYLLKR-DI-L-TMSFARRDTHEAQVQFALERG---------------------------- 267 (629)
Q Consensus 223 ~~~VLDIGCGtG~----~a~~La~~-g~-~-~v~i~gvDiS~~~i~~A~erg---------------------------- 267 (629)
..+|||+|||+|. ++..|++. +. . ...++++|+|+.|++.|++..
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4589999999997 56666664 21 1 236788899999999998741
Q ss_pred --------CCeEEEEecCCCCCCC-CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 268 --------VPAMIGVISSKRLPYP-ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 268 --------~~~~~~v~d~~~Lp~p-d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
..+.|.+.|....|++ .++||+|+|.++++|+.+. ...++.++.++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1477888888776665 5789999999999887632 267999999999999999985
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.2e-11 Score=117.97 Aligned_cols=100 Identities=12% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCC--CCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLP--YPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~ 295 (629)
..+|||||||+|.++..|++.... ..++++|+|+.+++.|+++ + .++.+..+|...++ +++++||.|++...
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 348999999999999999987432 2567889999999999864 3 36889999988776 77889999998654
Q ss_pred ccccccC--------HHHHHHHHHhcccCCcEEEEEe
Q 006834 296 LIPWYMY--------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 296 L~h~~~d--------~~~~L~el~RvLKPGG~liis~ 324 (629)
. +|... ...++.++.++|||||.|++.+
T Consensus 118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 3 33311 2579999999999999999985
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-11 Score=118.46 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC---CeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV---PAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~---~~~~~v~d~~~Lp~ 282 (629)
....+.+.+.+...++. +|||+|||+|.++..|++.+. .++++|+++.+++.|+++.. ++.+..+|......
T Consensus 56 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~ 130 (231)
T 1vbf_A 56 LNLGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE 130 (231)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc
Confidence 45566677777655444 899999999999999999873 56777999999999998732 68888888766322
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
.+++||+|++..+++|+. .++.++|||||++++..++.
T Consensus 131 ~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred cCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcCC
Confidence 467899999999997765 47899999999999997643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=123.09 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=80.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC-C--CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL-P--YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L-p--~pd~sFDlV~~s~ 294 (629)
..+|||||||+|.++..|++.... ..++|+|+|+.+++.|+++ + .++.+..+|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 348999999999999999988653 2567889999999998865 3 3688888887764 3 7789999999875
Q ss_pred cccccccCH--------HHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYMYD--------GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~d~--------~~~L~el~RvLKPGG~liis~P 325 (629)
.. +|.... ..++.++.|+|||||+|++++.
T Consensus 114 ~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 44 444221 2599999999999999999863
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-11 Score=118.16 Aligned_cols=97 Identities=7% Similarity=-0.087 Sum_probs=71.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHH----HHHHcCCCeEEEEecCCCC----CCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQ----FALERGVPAMIGVISSKRL----PYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~----~A~erg~~~~~~v~d~~~L----p~pd~sFDlV~~s~ 294 (629)
+.+|||+|||+|.++..|++... ...++++|+|+.|++ .|+++ .++.+.+.|.... ++. ++||+|+|..
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 44899999999999999998743 225678899998654 34333 4677777776653 444 7999999973
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. +.+...++.++.|+|||||+|+++.+
T Consensus 135 -~~--~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 135 -AQ--KNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp -CS--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cC--hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 21 21234569999999999999999853
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=118.54 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=84.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
..+|||+|||+|.++..++ . .++++|+++. ++.+.++|...+++++++||+|++..+++ + .+
T Consensus 68 ~~~vLDiG~G~G~~~~~l~---~---~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~-~~ 129 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR---N---PVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-G-TN 129 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC---S---CEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEEEESCCC-S-SC
T ss_pred CCeEEEECCcCCHHHHHhh---c---cEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEEEehhcc-c-cC
Confidence 3489999999999988773 2 4566799876 45677888888899899999999999994 4 48
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeec
Q 006834 303 DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLI 363 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 363 (629)
+..++.++.++|+|||++++..+...+ . ..+.+..+++..+|+.+.
T Consensus 130 ~~~~l~~~~~~L~~gG~l~i~~~~~~~-------~--------~~~~~~~~l~~~Gf~~~~ 175 (215)
T 2zfu_A 130 IRDFLEEANRVLKPGGLLKVAEVSSRF-------E--------DVRTFLRAVTKLGFKIVS 175 (215)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECGGGC-------S--------CHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCCC-------C--------CHHHHHHHHHHCCCEEEE
Confidence 899999999999999999998643211 0 234566777788886654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.7e-11 Score=114.66 Aligned_cols=108 Identities=9% Similarity=-0.049 Sum_probs=84.0
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL 280 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L 280 (629)
.....+.+.+...++. +|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +. ++.+..+|....
T Consensus 42 ~~~~~~l~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 116 (204)
T 3njr_A 42 PMRALTLAALAPRRGE--LLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA 116 (204)
T ss_dssp HHHHHHHHHHCCCTTC--EEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred HHHHHHHHhcCCCCCC--EEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence 3344555555554444 899999999999999999854 456779999999999875 33 588888888773
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.....+||+|++...+ +.. ++.++.++|||||.+++...
T Consensus 117 ~~~~~~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 117 LADLPLPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp GTTSCCCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred cccCCCCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 3334579999987744 456 99999999999999999864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=120.07 Aligned_cols=153 Identities=9% Similarity=0.043 Sum_probs=108.1
Q ss_pred ecCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 187 VEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 187 ~~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
..|-.+.+.-....|..........+.+.+. + +.+|||+|||+|.++..+++.+.. .++++|+|+.+++.|+++
T Consensus 94 e~g~~f~~d~~~~~f~~~~~~~~~~l~~~~~--~--~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n 167 (278)
T 2frn_A 94 ENGIKYKLDVAKIMFSPANVKERVRMAKVAK--P--DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVEN 167 (278)
T ss_dssp ETTEEEEEETTTSCCCGGGHHHHHHHHHHCC--T--TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHH
T ss_pred ECCEEEEEEccceeEcCCcHHHHHHHHHhCC--C--CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHH
Confidence 3455555544456666665566666666653 2 348999999999999999998764 467779999999999865
Q ss_pred ----CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcc
Q 006834 267 ----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTK 340 (629)
Q Consensus 267 ----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~ 340 (629)
+. .+.+.++|...++. +++||+|++.... ....++.++.++|||||.+++........
T Consensus 168 ~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------- 231 (278)
T 2frn_A 168 IHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV-----RTHEFIPKALSIAKDGAIIHYHNTVPEKL---------- 231 (278)
T ss_dssp HHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEEEEEEGGG----------
T ss_pred HHHcCCCceEEEEECCHHHhcc-cCCccEEEECCch-----hHHHHHHHHHHHCCCCeEEEEEEeecccc----------
Confidence 33 37889999888776 7899999985432 34678999999999999999975321100
Q ss_pred hhhhhHHHHHHHHHHHhcceee
Q 006834 341 EDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 341 e~l~~~~~~ie~l~~~l~w~~v 362 (629)
......+.+.+.++..+|+..
T Consensus 232 -~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 232 -MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp -TTTTTHHHHHHHHHHTTCEEE
T ss_pred -ccccHHHHHHHHHHHcCCeeE
Confidence 001123446677777777543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-11 Score=117.41 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=88.1
Q ss_pred chHHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecC
Q 006834 204 GADAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISS 277 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~ 277 (629)
..+.+.+.+.+.+... .+ .+|||+|||+|.++..++.++.. .++++|+++.+++.|+++ + .++.+.+.|.
T Consensus 37 ~~~~~~~~l~~~l~~~~~~--~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~ 112 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA 112 (202)
T ss_dssp -CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CHHHHHHHHHHHHHhhcCC--CeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 3455666666665432 33 38999999999999998888753 567789999999999865 3 3688888887
Q ss_pred CC-CCCCCCCeeEEEecCcccccccCHHHHHHHHHh--cccCCcEEEEEeCC
Q 006834 278 KR-LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDR--VLRPGGYWILSGPP 326 (629)
Q Consensus 278 ~~-Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~R--vLKPGG~liis~P~ 326 (629)
.. ++..+++||+|++...+ +. .....++.++.+ +|+|||+++++..+
T Consensus 113 ~~~~~~~~~~fD~V~~~~p~-~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 113 MSFLAQKGTPHNIVFVDPPF-RR-GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp HHHHSSCCCCEEEEEECCSS-ST-TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred HHHHhhcCCCCCEEEECCCC-CC-CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 66 46667899999998775 33 256678888865 69999999998653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-10 Score=123.54 Aligned_cols=149 Identities=13% Similarity=0.074 Sum_probs=103.3
Q ss_pred chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC----CeEEEEe
Q 006834 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV----PAMIGVI 275 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~----~~~~~v~ 275 (629)
+.+.-...+.+.++...+ .+|||+|||+|.++..+++++.. ..++++|+|+.+++.|+++ +. ++.+...
T Consensus 206 ~~d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~ 282 (375)
T 4dcm_A 206 GLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN 282 (375)
T ss_dssp SCCHHHHHHHHTCCCSCC--SEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEEC
T ss_pred cccHHHHHHHHhCcccCC--CeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEec
Confidence 344445566777765544 48999999999999999998532 2567789999999999864 32 4777888
Q ss_pred cCCCCCCCCCCeeEEEecCcccccc---cC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHH
Q 006834 276 SSKRLPYPARAFDMAHCSGCLIPWY---MY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIE 351 (629)
Q Consensus 276 d~~~Lp~pd~sFDlV~~s~~L~h~~---~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie 351 (629)
|... ++++++||+|+|+..+++.. .. ...++.++.++|||||.++++.+... + ....++
T Consensus 283 D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~------~----------~~~~l~ 345 (375)
T 4dcm_A 283 NALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL------D----------YFHKLK 345 (375)
T ss_dssp STTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS------C----------HHHHHH
T ss_pred hhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc------C----------HHHHHH
Confidence 8766 56778999999998885421 12 23689999999999999999863221 0 112344
Q ss_pred HHHHHhcceeecccCceEEEecc
Q 006834 352 DIAKRLCWKKLIEKNDLAIWQKP 374 (629)
Q Consensus 352 ~l~~~l~w~~v~~~~~~aiwqKp 374 (629)
+... ..+.+.+...+.|++..
T Consensus 346 ~~fg--~~~~~a~~~~F~V~~~~ 366 (375)
T 4dcm_A 346 KIFG--NCTTIATNNKFVVLKAV 366 (375)
T ss_dssp HHHS--CCEEEEECSSEEEEEEE
T ss_pred HhcC--CEEEEeeCCCEEEEEEc
Confidence 4433 34566666777777644
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=117.34 Aligned_cols=101 Identities=14% Similarity=0.035 Sum_probs=79.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC-CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP-YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp-~pd~sFDlV~~s~ 294 (629)
+.+|||+|||+|.++..+++.. .. ..++++|+++.+++.|+++ + .++.+.++|...++ +.+++||+|++..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 3489999999999999999872 21 2567889999999999876 2 36889999987776 6678999999977
Q ss_pred ccccc-----cc---CHHHHHHHHHhcccCCcEEEEEe
Q 006834 295 CLIPW-----YM---YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~h~-----~~---d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+.+. .. +...++.++.++|||||++++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 55221 11 23469999999999999999985
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.1e-11 Score=121.75 Aligned_cols=116 Identities=9% Similarity=-0.036 Sum_probs=86.8
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCC---chHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGV---ASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLP 281 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGt---G~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp 281 (629)
+++.+.+.+.... ...+|||||||+ |.++..+.+.... ..++++|+|+.|++.|+++. .++.+..+|....+
T Consensus 64 ~~~~~~~~l~~~~-~~~~vLDlGcG~pt~G~~~~~~~~~~p~-~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~ 141 (274)
T 2qe6_A 64 VLVRGVRFLAGEA-GISQFLDLGSGLPTVQNTHEVAQSVNPD-ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPE 141 (274)
T ss_dssp HHHHHHHHHHTTT-CCCEEEEETCCSCCSSCHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHH
T ss_pred HHHHHHHHHhhcc-CCCEEEEECCCCCCCChHHHHHHHhCCC-CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCch
Confidence 3444444443211 235899999999 9987777665432 35677799999999999763 46889998876421
Q ss_pred -----------CCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 -----------YPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 -----------~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
++..+||+|++..+++|+.++ ...+|+++.++|||||+|+++..
T Consensus 142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 333589999999999888743 78899999999999999999864
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-11 Score=126.94 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=86.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~ 279 (629)
..+.+.|.+.+...++. +|||||||+|.++..+++.+.. .++++|+++ +++.|+++ + .++.+..+|...
T Consensus 50 ~~~~~~i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~--~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGAK--KVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhhhhcCCC--EEEEeeccCcHHHHHHHHcCCC--EEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHH
Confidence 44556666665554444 8999999999999999998642 567779996 89888864 2 468899999999
Q ss_pred CCCCCCCeeEEEecCc---ccccccCHHHHHHHHHhcccCCcEEEE
Q 006834 280 LPYPARAFDMAHCSGC---LIPWYMYDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~---L~h~~~d~~~~L~el~RvLKPGG~lii 322 (629)
+++++++||+|++..+ +.+ ..+...++.++.|+|||||.++.
T Consensus 125 ~~~~~~~~D~Ivs~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 125 VHLPVEKVDVIISEWMGYFLLF-ESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp SCCSCSCEEEEEECCCBTTBTT-TCHHHHHHHHHHHHEEEEEEEES
T ss_pred hcCCCCcEEEEEEcCchhhccC-HHHHHHHHHHHHhhcCCCcEEEc
Confidence 9988889999998763 322 22457799999999999999983
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=108.80 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=86.6
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~ 279 (629)
.....+.+.+.+...++. +|||+|||+|.++..+++.+. .++++|+++.+++.|+++ + .++.+...|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 94 (183)
T 2yxd_A 20 KEEIRAVSIGKLNLNKDD--VVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED 94 (183)
T ss_dssp CHHHHHHHHHHHCCCTTC--EEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH
T ss_pred HHHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc
Confidence 455666777776654444 899999999999999998443 567779999999999875 3 358888888766
Q ss_pred CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++++++||+|++..+ .+...++.++.++ |||.+++..+
T Consensus 95 -~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 95 -VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp -HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred -cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 666789999999887 3678899999999 9999999864
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=110.04 Aligned_cols=111 Identities=20% Similarity=0.105 Sum_probs=86.4
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~ 278 (629)
.......+.+.+...++. +|||+|||+|.++..+++.+ ..++++|+++.+++.|+++ + .++.+...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 92 (192)
T 1l3i_A 18 AMEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (192)
T ss_dssp CHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred hHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence 345555666666554444 99999999999999999987 3567889999999999874 3 36778777765
Q ss_pred CCCCCC-CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPA-RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd-~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ++++ ++||+|++..+++ +...++.++.++|+|||.+++..+
T Consensus 93 ~-~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 93 E-ALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp H-HHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred H-hcccCCCCCEEEECCchH----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 5 2333 5899999987763 347899999999999999999864
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=115.94 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcC-ccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC
Q 006834 206 DAYIDNINELIP-LTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~-~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~ 278 (629)
+...+.+.+.+. ... +.+|||+|||+|.++..+++++. ..++++|+++.+++.|+++ +. ++.+...|..
T Consensus 16 ~~~~~~~~~~l~~~~~--~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 91 (177)
T 2esr_A 16 DKVRGAIFNMIGPYFN--GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE 91 (177)
T ss_dssp --CHHHHHHHHCSCCC--SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH
T ss_pred HHHHHHHHHHHHhhcC--CCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH
Confidence 444555656554 233 34899999999999999998853 2567789999999999875 22 4778887776
Q ss_pred C-CCCCCCCeeEEEecCcccccccCHHHHHHHHH--hcccCCcEEEEEeCCC
Q 006834 279 R-LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVD--RVLRPGGYWILSGPPI 327 (629)
Q Consensus 279 ~-Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~--RvLKPGG~liis~P~~ 327 (629)
. ++..+++||+|++...++ .. .....+..+. ++|+|||++++..+..
T Consensus 92 ~~~~~~~~~fD~i~~~~~~~-~~-~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 92 RAIDCLTGRFDLVFLDPPYA-KE-TIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHHBCSCEEEEEECCSSH-HH-HHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HhHHhhcCCCCEEEECCCCC-cc-hHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 5 344456799999987652 22 3456677776 9999999999987543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-10 Score=110.41 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=78.7
Q ss_pred CCeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCC-CCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRL-PYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~L-p~pd~sFDlV~~s~~ 295 (629)
+.+|||+||| +|.++..+++. +. .++++|+++.+++.|+++ +.++.+.++|...+ ++++++||+|+++..
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 4489999999 99999999988 44 567779999999999865 45788888886433 466789999999877
Q ss_pred ccccccC------------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYMY------------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~d------------------~~~~L~el~RvLKPGG~liis~P 325 (629)
+++.... ...++.++.++|||||++++..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 6443310 26789999999999999999754
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=119.72 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=78.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----------C-CCeEEEEecCCC-CC--CCCCCee
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----------G-VPAMIGVISSKR-LP--YPARAFD 288 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----------g-~~~~~~v~d~~~-Lp--~pd~sFD 288 (629)
..+|||||||+|.++..|++.... ..++|+|+|+.|++.|+++ + .++.+..+|+.. ++ +++++||
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 348999999999999999987543 2567889999999988742 2 368899999876 66 7889999
Q ss_pred EEEecCcccccccC--------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 289 MAHCSGCLIPWYMY--------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 289 lV~~s~~L~h~~~d--------~~~~L~el~RvLKPGG~liis~P 325 (629)
.|++...- +|... ...++.++.++|||||.|++.+.
T Consensus 126 ~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 126 KMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99976543 33211 14699999999999999999853
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.7e-11 Score=125.50 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~ 279 (629)
..|.+.|.+.....++ .+|||+|||+|.++..+++.+.. .++++|+| ++++.|+++ +. .+.+..++...
T Consensus 52 ~~~~~~i~~~~~~~~~--~~VLDvGcG~G~~~~~la~~g~~--~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 126 (349)
T 3q7e_A 52 LTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGAR--KVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEE 126 (349)
T ss_dssp HHHHHHHHTCHHHHTT--CEEEEESCTTSHHHHHHHHTTCS--EEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCC--CEEEEEeccchHHHHHHHHCCCC--EEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHH
Confidence 3344445443333333 48999999999999999998652 45777999 588888764 33 38999999999
Q ss_pred CCCCCCCeeEEEecCccc--ccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 280 LPYPARAFDMAHCSGCLI--PWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~--h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+++++++||+|++..+.+ +.......++.++.|+|||||+++..
T Consensus 127 ~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 127 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 999889999999965432 23345788999999999999999753
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-11 Score=119.60 Aligned_cols=111 Identities=12% Similarity=0.175 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
+.+.+.+.++++. ..+|||+|||+|.++..++.....+ .++++|+++.|++.++++ |....+.+.|....
T Consensus 37 d~fY~~~~~~l~~----~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~- 110 (200)
T 3fzg_A 37 NDFYTYVFGNIKH----VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD- 110 (200)
T ss_dssp HHHHHHHHHHSCC----CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-
T ss_pred HHHHHHHHhhcCC----CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-
Confidence 3344555555532 4589999999999999998886655 788999999999999875 44434555555443
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.+.++||+|+...++|++ ++.+..+.++.+.|+|||+||-.
T Consensus 111 ~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 111 VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEEe
Confidence 456889999999999888 56666777999999999987654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-10 Score=111.77 Aligned_cols=93 Identities=8% Similarity=-0.019 Sum_probs=75.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCC----CCCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKR----LPYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~----Lp~pd~sFDlV~~s~~ 295 (629)
+.+|||+|||+|.++..|++... ...++++|+++.+++.|+++. .++.+...|... +++. ++||+|++
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~--- 149 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE--- 149 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE---
T ss_pred CCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE---
Confidence 34899999999999999998742 125677899999999988753 468888888877 6766 78999993
Q ss_pred ccccccCH---HHHHHHHHhcccCCcEEEEE
Q 006834 296 LIPWYMYD---GLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 296 L~h~~~d~---~~~L~el~RvLKPGG~liis 323 (629)
+.. ++ ..++.++.++|||||+++++
T Consensus 150 --~~~-~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 --DVA-QPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp --CCC-STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --ecC-ChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 222 44 67899999999999999997
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=116.18 Aligned_cols=95 Identities=8% Similarity=0.064 Sum_probs=77.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCC---CCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYP---ARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~p---d~sFDlV~~s~ 294 (629)
+.+|||+|||+|.++..|+.... ...++++|+|+.+++.|+++ +. ++.+.++|...++++ +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 34899999999999999986432 22567789999999999864 43 588888888777754 67999999866
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+ .+...++.++.++|||||++++.
T Consensus 150 ~-----~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 150 V-----ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp C-----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred c-----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 2 36788999999999999999986
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=120.52 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=80.0
Q ss_pred hhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCCCCCee
Q 006834 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~pd~sFD 288 (629)
.++...++. +|||||||+|.++..++.+.. ...++++|++++|++.|+++ + .++.+.++|...++ +++||
T Consensus 116 ~la~l~~g~--rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FD 190 (298)
T 3fpf_A 116 ALGRFRRGE--RAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFD 190 (298)
T ss_dssp HHTTCCTTC--EEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCS
T ss_pred HHcCCCCcC--EEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcC
Confidence 344444444 999999999987765544322 23567779999999999975 4 36889999988775 78999
Q ss_pred EEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 289 MAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 289 lV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+|++... ..+...++.++.|+|||||.|++...
T Consensus 191 vV~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 191 VLMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEECTT----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 9998654 34778999999999999999999753
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-11 Score=131.37 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=75.9
Q ss_pred CCeEEEeCCC------CchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCC------CCCeeEE
Q 006834 223 IRTAVDTGCG------VASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYP------ARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCG------tG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~p------d~sFDlV 290 (629)
+.+||||||| +|..+..+++.......++++|+|+.|. ....++.+.++|...+++. +++||+|
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 4589999999 7766777776421123677889999983 2446799999999998877 7899999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+|... +++ .+...+|.++.|+|||||+|++...
T Consensus 293 isdgs-H~~-~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 293 IDDGS-HIN-AHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp EECSC-CCH-HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred EECCc-ccc-hhHHHHHHHHHHhcCCCeEEEEEec
Confidence 98653 344 3678899999999999999999853
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.1e-11 Score=114.37 Aligned_cols=112 Identities=14% Similarity=0.058 Sum_probs=85.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
......+.+.+...++. +|||+|||+|.++..+++.+.....++++|+++.+++.|+++ + .++.+...|...
T Consensus 63 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~- 139 (215)
T 2yxe_A 63 IHMVGMMCELLDLKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL- 139 (215)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG-
T ss_pred HHHHHHHHHhhCCCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-
Confidence 44555666666555444 999999999999999998752112567779999999999875 3 357888877643
Q ss_pred CCC-CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 281 PYP-ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 281 p~p-d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+++ +++||+|++..+++|+. .++.++|||||.+++..++.
T Consensus 140 ~~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 140 GYEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp CCGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECCC
Confidence 333 67899999999997765 48899999999999997643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-11 Score=129.58 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=89.8
Q ss_pred chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc-----------C---C
Q 006834 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER-----------G---V 268 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er-----------g---~ 268 (629)
.....+..+.+.+...++. +|||||||+|.++..++.. +.. .++|+|+++.+++.|++. + .
T Consensus 157 t~~~~i~~il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~ 232 (438)
T 3uwp_A 157 TSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 232 (438)
T ss_dssp THHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC
T ss_pred CCHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3455566666776666555 9999999999999999865 332 367789999999888752 2 4
Q ss_pred CeEEEEecCCCCCCCC--CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 269 PAMIGVISSKRLPYPA--RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 ~~~~~v~d~~~Lp~pd--~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++.|.++|...+++.+ ..||+|+++..+ ++ ++....|.++.|+|||||.|++..
T Consensus 233 rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~-pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 233 EYTLERGDFLSEEWRERIANTSVIFVNNFA-FG-PEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp EEEEEECCTTSHHHHHHHHTCSEEEECCTT-CC-HHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CeEEEECcccCCccccccCCccEEEEcccc-cC-chHHHHHHHHHHcCCCCcEEEEee
Confidence 6889999999888754 479999997765 33 367788999999999999999864
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-11 Score=113.29 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=74.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-CCeEEEEecCCCCCC---CCCCeeEEEecCccc
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-VPAMIGVISSKRLPY---PARAFDMAHCSGCLI 297 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-~~~~~~v~d~~~Lp~---pd~sFDlV~~s~~L~ 297 (629)
.+.+|||+|||. + .+|+|+.|++.|+++. .++.+.++|...+++ ++++||+|+|+.+++
T Consensus 12 ~g~~vL~~~~g~--------------v---~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~ 74 (176)
T 2ld4_A 12 AGQFVAVVWDKS--------------S---PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPG 74 (176)
T ss_dssp TTSEEEEEECTT--------------S---CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred CCCEEEEecCCc--------------e---eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence 345999999996 1 1599999999999874 358899999998887 789999999999998
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
|+..+...+|++++|+|||||+|++..|
T Consensus 75 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 75 STTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp CCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 8734789999999999999999999765
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-11 Score=125.36 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=87.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
+...+.+.+.+....+ .+|||+|||+|.++..+++.+... .++++|+|+.+++.|+++ +....+...|....
T Consensus 182 d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~- 257 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE- 257 (343)
T ss_dssp CHHHHHHHHHSCTTCC--SBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT-
T ss_pred cHHHHHHHHhcCcCCC--CeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc-
Confidence 4445566666644333 389999999999999999987432 567779999999999865 45567777776543
Q ss_pred CCCCCeeEEEecCccccc----ccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPW----YMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~----~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+++||+|+|+..+++. ..+...++.++.++|||||.+++..+
T Consensus 258 -~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 258 -VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp -CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred -ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 46799999999988541 12356799999999999999999865
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-11 Score=111.73 Aligned_cols=95 Identities=16% Similarity=0.043 Sum_probs=75.7
Q ss_pred CCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC--------CCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--------YPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--------~pd~sFDlV~~s 293 (629)
..+|||+|||+|.++..+++. +.. ..++++|+++ +++. .++.+.+.|....+ +++++||+|++.
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 348999999999999999987 331 2567779998 6543 46788888888776 777899999998
Q ss_pred CcccccccCH-----------HHHHHHHHhcccCCcEEEEEeC
Q 006834 294 GCLIPWYMYD-----------GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 294 ~~L~h~~~d~-----------~~~L~el~RvLKPGG~liis~P 325 (629)
..+++.. .. ..++.++.++|+|||.+++..+
T Consensus 96 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSG-TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCccccC-CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8774433 43 5789999999999999999864
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=122.09 Aligned_cols=99 Identities=23% Similarity=0.141 Sum_probs=82.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
..+|||||||+|.++..+++.... ..++++|+ +.+++.|+++ + ..+.+..+|.. .+++. +||+|++..++
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHED-LSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CCEEEEeCCChhHHHHHHHHHCCC-CeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 458999999999999999987543 25667799 9999999865 3 45889988886 45655 89999999999
Q ss_pred cccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 297 IPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 297 ~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
|||.++ ...+|+++.++|||||++++..+
T Consensus 246 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 246 HDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 888733 36799999999999999999764
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-11 Score=118.04 Aligned_cols=116 Identities=11% Similarity=-0.022 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC----CeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV----PAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~----~~~~~v~d~~~Lp 281 (629)
..+++.+.+.+... ..+.+|||+|||+|.++..+++.+.. ..++++|+++.+++.|+++.. ++.+.++|... +
T Consensus 15 ~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~ 91 (215)
T 4dzr_A 15 EVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-W 91 (215)
T ss_dssp HHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC-------------------CCHHHHHH-H
T ss_pred HHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-h
Confidence 44566666666431 23448999999999999999998542 357788999999999987632 45666666655 5
Q ss_pred CCC-----CCeeEEEecCccccccc------C-------------------HHHHHHHHHhcccCCcE-EEEEe
Q 006834 282 YPA-----RAFDMAHCSGCLIPWYM------Y-------------------DGLYLLEVDRVLRPGGY-WILSG 324 (629)
Q Consensus 282 ~pd-----~sFDlV~~s~~L~h~~~------d-------------------~~~~L~el~RvLKPGG~-liis~ 324 (629)
+++ ++||+|+++..+++... . ...++.++.++|||||+ +++..
T Consensus 92 ~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 92 LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 554 89999999765533220 0 05688999999999999 55553
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.9e-11 Score=122.28 Aligned_cols=111 Identities=12% Similarity=-0.012 Sum_probs=88.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
....+.+.+.+...++. +|||+|||+|.++..+++.+.....++++|+++++++.|+++ + .++.+...|....
T Consensus 61 ~~~~~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 61 PSLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence 45566777777665555 999999999999999998765322467779999999999875 3 3488888888775
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+.++++||+|++..+++|+. .++.++|||||.+++...
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred cccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 54568899999999997765 578899999999999853
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-10 Score=114.20 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=86.2
Q ss_pred chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCC
Q 006834 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSK 278 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~ 278 (629)
....+++.+.+.+. . ...+|||+|||+|.++..+++.... ..++++|+|+.+++.|+++ +. ++.+.++|..
T Consensus 94 ~te~l~~~~l~~~~-~--~~~~vLDlG~GsG~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~ 169 (276)
T 2b3t_A 94 DTECLVEQALARLP-E--QPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF 169 (276)
T ss_dssp THHHHHHHHHHHSC-S--SCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTT
T ss_pred hHHHHHHHHHHhcc-c--CCCEEEEecCCccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchh
Confidence 35666777777665 2 2348999999999999999976321 2567789999999999875 33 5888888876
Q ss_pred CCCCCCCCeeEEEecCccccc-------------c-----------cCHHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPARAFDMAHCSGCLIPW-------------Y-----------MYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~-------------~-----------~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.. +++++||+|+++..++.. + .....++.++.++|||||++++..
T Consensus 170 ~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 170 SA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp GG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 53 446789999998544322 1 123568999999999999999984
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=116.21 Aligned_cols=112 Identities=12% Similarity=0.016 Sum_probs=84.9
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC---------CeEEEEecCCCC-
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV---------PAMIGVISSKRL- 280 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~---------~~~~~v~d~~~L- 280 (629)
.+..++.... ..+|||+|||+|.++..|+++... ..++++|+++.+++.|+++.. ++.+...|...+
T Consensus 27 lL~~~~~~~~--~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~ 103 (260)
T 2ozv_A 27 LLASLVADDR--ACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRA 103 (260)
T ss_dssp HHHHTCCCCS--CEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCH
T ss_pred HHHHHhcccC--CCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHh
Confidence 3445555443 348999999999999999998642 367888999999999997632 278888888776
Q ss_pred ------CCCCCCeeEEEecCccccc-----------------ccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 ------PYPARAFDMAHCSGCLIPW-----------------YMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 ------p~pd~sFDlV~~s~~L~h~-----------------~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++++++||+|+++..+... ......++.++.++|||||.|++..+
T Consensus 104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 3567899999998544322 11256789999999999999999854
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-10 Score=121.30 Aligned_cols=110 Identities=19% Similarity=0.100 Sum_probs=86.0
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYP 283 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~p 283 (629)
..+.+.+.... ..+|||||||+|.++..+++.... ..++++|+ +.+++.|+++ + .++.+..+|.. .+++
T Consensus 192 ~~l~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p 266 (369)
T 3gwz_A 192 GQVAAAYDFSG--AATAVDIGGGRGSLMAAVLDAFPG-LRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP 266 (369)
T ss_dssp HHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC
T ss_pred HHHHHhCCCcc--CcEEEEeCCCccHHHHHHHHHCCC-CeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC
Confidence 34444444333 459999999999999999998543 25677799 9999999864 2 35889998887 5666
Q ss_pred CCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~P 325 (629)
. .||+|++..++++|.+.. ..+|+++.++|||||++++..+
T Consensus 267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 308 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDN 308 (369)
T ss_dssp S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 5 899999999998887322 3799999999999999999753
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=123.39 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=83.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCC--CCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRL--PYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~L--p~pd~sFDlV~~s~ 294 (629)
..+|||||||+|.++..++++... ..++++|+ +.+++.|+++ + .++.+..+|.... |++ ++||+|++..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKE-VEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTT-CEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCC-CEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 458999999999999999987543 25677899 9999999876 2 2588999998775 566 7899999999
Q ss_pred cccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
++++|..+ ...+|+++.++|||||.+++..+
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 99888733 25789999999999999999764
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=113.05 Aligned_cols=112 Identities=17% Similarity=0.067 Sum_probs=83.6
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C------CCeEEEEec
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G------VPAMIGVIS 276 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g------~~~~~~v~d 276 (629)
....+.+.+......+.+|||+|||+|.++..|++. +.. ..++++|+++.+++.|+++ + .++.+.+.|
T Consensus 63 ~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 141 (226)
T 1i1n_A 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 141 (226)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECC
Confidence 344455555422223449999999999999999986 321 2567779999999999864 2 268888888
Q ss_pred CCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 277 SKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 277 ~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
....+..+++||+|++...+.++. .++.++|||||+++++.++.
T Consensus 142 ~~~~~~~~~~fD~i~~~~~~~~~~-------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 142 GRMGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEESCT
T ss_pred cccCcccCCCcCEEEECCchHHHH-------HHHHHhcCCCcEEEEEEecC
Confidence 776655567899999988875553 68899999999999987543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=115.62 Aligned_cols=97 Identities=16% Similarity=0.034 Sum_probs=78.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCC---CCCeeEEEec
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYP---ARAFDMAHCS 293 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~p---d~sFDlV~~s 293 (629)
.+.+|||||||+|..+..|+..... ..++++|+++.++++|+++ +. ++.+..++...++.. +++||+|+|.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 3458999999999999999987432 2567889999999999865 43 588999888777643 4799999986
Q ss_pred CcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 294 ~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+- +...++.++.++|||||+|++..
T Consensus 159 a~~-----~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 159 AVA-----PLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp SSC-----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CcC-----CHHHHHHHHHHHcCCCeEEEEEe
Confidence 532 55789999999999999998863
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=119.75 Aligned_cols=115 Identities=15% Similarity=0.072 Sum_probs=88.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~ 282 (629)
...+.+.++.......+|||+|||+|.++..+++.... ..++++|++ .+++.|+++ +. ++.+..+|....++
T Consensus 152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 229 (335)
T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPN-AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY 229 (335)
T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC
Confidence 34444444430022449999999999999999988432 256778999 999999875 32 48899999887777
Q ss_pred CCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 283 PARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++ ||+|++..+++|+... ...+|+++.++|+|||++++..+.
T Consensus 230 ~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 230 GND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp CSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 654 9999999999888622 368999999999999999998653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=116.86 Aligned_cols=128 Identities=15% Similarity=0.081 Sum_probs=92.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
..+.+.+.+.+ .+ +.+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +..+.+...+....
T Consensus 108 ~~~~~~l~~~~--~~--~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~- 179 (254)
T 2nxc_A 108 RLALKALARHL--RP--GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA- 179 (254)
T ss_dssp HHHHHHHHHHC--CT--TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-
T ss_pred HHHHHHHHHhc--CC--CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-
Confidence 33455554443 22 34899999999999999999876 567779999999999875 34467777665542
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhccee
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKK 361 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 361 (629)
+++++||+|+++...++ ...++.++.++|||||++++++... ...+.+.+.++..+|+.
T Consensus 180 ~~~~~fD~Vv~n~~~~~----~~~~l~~~~~~LkpgG~lils~~~~-----------------~~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 180 LPFGPFDLLVANLYAEL----HAALAPRYREALVPGGRALLTGILK-----------------DRAPLVREAMAGAGFRP 238 (254)
T ss_dssp GGGCCEEEEEEECCHHH----HHHHHHHHHHHEEEEEEEEEEEEEG-----------------GGHHHHHHHHHHTTCEE
T ss_pred CcCCCCCEEEECCcHHH----HHHHHHHHHHHcCCCCEEEEEeecc-----------------CCHHHHHHHHHHCCCEE
Confidence 45678999999765432 3579999999999999999985311 11344666777777765
Q ss_pred e
Q 006834 362 L 362 (629)
Q Consensus 362 v 362 (629)
+
T Consensus 239 ~ 239 (254)
T 2nxc_A 239 L 239 (254)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=113.83 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=86.7
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc-----C-CCeEEEEecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER-----G-VPAMIGVISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er-----g-~~~~~~v~d~~~Lp 281 (629)
+..+.+.+...++. +|||+|||+|.++..+++. +.. ..++++|+++.+++.|+++ + .++.+...|....+
T Consensus 85 ~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~ 161 (258)
T 2pwy_A 85 ASAMVTLLDLAPGM--RVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE 161 (258)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred HHHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence 44566666555544 9999999999999999987 321 2566779999999999876 4 46888888988887
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++||+|++. .. ++..++.++.++|+|||++++..|
T Consensus 162 ~~~~~~D~v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 162 LEEAAYDGVALD-----LM-EPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp CCTTCEEEEEEE-----SS-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCcCEEEEC-----Cc-CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 888899999983 22 566899999999999999999875
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=116.69 Aligned_cols=133 Identities=12% Similarity=0.127 Sum_probs=82.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEE-ecCCCC---CCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGV-ISSKRL---PYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v-~d~~~L---p~pd~sFDlV~~s~~L~h 298 (629)
+.+|||||||+|.++..|++++.. .++++|+|+.|++.|+++...+.... .+...+ .++...||.+.+..++.+
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 348999999999999999999753 45777999999999988765443221 111111 111222455554444433
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCCCccccc-----cCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYW-----RGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~-----~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
+ ..+|.++.|+|||||+|++...+ .+...+ .+.-++........+.+.++++..+|+..
T Consensus 116 l----~~~l~~i~rvLkpgG~lv~~~~p-~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~ 179 (232)
T 3opn_A 116 L----DLILPPLYEILEKNGEVAALIKP-QFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVK 179 (232)
T ss_dssp G----GGTHHHHHHHSCTTCEEEEEECH-HHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred H----HHHHHHHHHhccCCCEEEEEECc-ccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEE
Confidence 3 56899999999999999997521 111111 01111223333345667777888887543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=123.48 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=87.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~ 279 (629)
..+.+.|.+.+....+ .+|||||||+|.++..+++.+.. .++++|+| .|++.|+++ +. .+.+..+|...
T Consensus 49 ~~~~~~i~~~~~~~~~--~~VLDlGcGtG~ls~~la~~g~~--~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFEG--KTVLDVGTGSGILAIWSAQAGAR--KVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED 123 (376)
T ss_dssp HHHHHHHHTTTTTTTT--CEEEEESCTTTHHHHHHHHTTCS--EEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHHhccccCCC--CEEEEeccCcCHHHHHHHhcCCC--EEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh
Confidence 4455666555444444 49999999999999999998763 46777999 999998864 32 38999999998
Q ss_pred CCCCCCCeeEEEecCcccccc--cCHHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWY--MYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~--~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++++ ++||+|++....+... .....++.++.++|||||++++..
T Consensus 124 ~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 124 ISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 8877 8999999966443332 346789999999999999998753
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=120.57 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~ 279 (629)
..|.+.|.+.+...++. +|||+|||+|.++..+++.+.. .++++|++ .+++.|+++ + ..+.+..++...
T Consensus 24 ~~y~~ai~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAK--HVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCS--EEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhHhhcCCC--EEEEecCccHHHHHHHHHCCCC--EEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhh
Confidence 44555665555444444 8999999999999999998652 46777999 588888764 3 348899999998
Q ss_pred CCCCCCCeeEEEecCccccc--ccCHHHHHHHHHhcccCCcEEEE
Q 006834 280 LPYPARAFDMAHCSGCLIPW--YMYDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~--~~d~~~~L~el~RvLKPGG~lii 322 (629)
+++++++||+|++.....++ ......++.++.++|||||.++.
T Consensus 99 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 88888899999997543332 22467899999999999999974
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-10 Score=113.46 Aligned_cols=114 Identities=9% Similarity=0.011 Sum_probs=84.3
Q ss_pred hHHHHHHHHhhc---CccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecC
Q 006834 205 ADAYIDNINELI---PLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG---VPAMIGVISS 277 (629)
Q Consensus 205 a~~~i~~I~~lL---~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~ 277 (629)
...+...|..-+ ..++|. +|||+|||+|.++..|++. |..+ .++++|+++.|++.++++. .++..+..+.
T Consensus 59 rsklaa~i~~gl~~l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G-~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~ 135 (233)
T 4df3_A 59 RSKLAAALLKGLIELPVKEGD--RILYLGIASGTTASHMSDIIGPRG-RIYGVEFAPRVMRDLLTVVRDRRNIFPILGDA 135 (233)
T ss_dssp TCHHHHHHHTTCSCCCCCTTC--EEEEETCTTSHHHHHHHHHHCTTC-EEEEEECCHHHHHHHHHHSTTCTTEEEEESCT
T ss_pred chHHHHHHHhchhhcCCCCCC--EEEEecCcCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhHhhcCeeEEEEec
Confidence 344445555433 345555 9999999999999999986 4433 4677899999999998753 3566666665
Q ss_pred C---CCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 278 K---RLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 278 ~---~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
. ..++..+++|+|++... .+.+...++.++.++|||||+++++.
T Consensus 136 ~~p~~~~~~~~~vDvVf~d~~---~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 136 RFPEKYRHLVEGVDGLYADVA---QPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp TCGGGGTTTCCCEEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCccccccccceEEEEEEecc---CChhHHHHHHHHHHhccCCCEEEEEE
Confidence 3 34566789999997543 23356789999999999999999974
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=119.23 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=85.8
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCC-CC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLP-YP 283 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp-~p 283 (629)
.+.+.+.... ...+|||||||+|.++..+++.... ..++++|+ +.+++.|+++ +. .+.+..+|....+ +.
T Consensus 169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence 3444444333 1459999999999999999988543 35667799 7788888764 32 4889998887765 23
Q ss_pred CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
.+.||+|++..+++||.+. ...+|+++.++|||||++++..+
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 4679999999999888732 36899999999999999999763
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.1e-11 Score=117.74 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=73.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCc-HHHHHHH---HHc----C-CCeEEEEecCCCCCCC-CCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTH-EAQVQFA---LER----G-VPAMIGVISSKRLPYP-ARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS-~~~i~~A---~er----g-~~~~~~v~d~~~Lp~p-d~sFDlV~~ 292 (629)
+.+|||||||+|.++..|+++.. ...++|+|+| +.|++.| +++ + .++.+.+++...+|.. .+.+|.|++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 44899999999999999996543 2357788999 7777776 432 3 3588999998888632 256777766
Q ss_pred cCccc----ccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLI----PWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~----h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++.+. +...+...+|.++.|+|||||+|++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 54321 222234568999999999999999943
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.2e-10 Score=115.12 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=86.6
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc-----C---CCeEEEEecCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER-----G---VPAMIGVISSK 278 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er-----g---~~~~~~v~d~~ 278 (629)
.+..+.+.+...++. +|||+|||+|.++..|++. +. ...++++|+++.+++.|+++ + .++.+...|..
T Consensus 87 ~~~~i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~ 163 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGP-AGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 163 (280)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred HHHHHHHHcCCCCCC--EEEEEcccccHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence 345566666655544 8999999999999999985 22 12466779999999999875 3 46888888988
Q ss_pred CCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
..++++++||+|++.. . ++..++.++.++|+|||++++..|
T Consensus 164 ~~~~~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 164 DSELPDGSVDRAVLDM-----L-APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp GCCCCTTCEEEEEEES-----S-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred hcCCCCCceeEEEECC-----c-CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 8888788999999832 2 556789999999999999999876
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=121.01 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=88.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~ 279 (629)
..|.+.|.+.+...++. +|||||||+|.++..+++.+.. .++++|+|+ +++.|+++ + .++.+..+|...
T Consensus 36 ~~y~~~i~~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~--~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~ 110 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKDK--IVLDVGCGSGILSFFAAQAGAR--KIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE 110 (348)
T ss_dssp HHHHHHHHHTGGGTTTC--EEEEETCTTSHHHHHHHHTTCS--EEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCcC--EEEEcCCCccHHHHHHHhCCCC--EEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhh
Confidence 45666777766655444 9999999999999999988642 567779996 88888754 3 358899999888
Q ss_pred CCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
++++ ++||+|++..+++|+... ....+.++.++|||||.+++..
T Consensus 111 ~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 111 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 8765 689999999888777633 4578889999999999998753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-10 Score=119.82 Aligned_cols=110 Identities=20% Similarity=0.218 Sum_probs=85.0
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYP 283 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~p 283 (629)
+.+.+.+.... ..+|||||||+|.++..+++.... ..++++|+ +.+++.|+++ +. ++.+..+|... +++
T Consensus 172 ~~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 246 (374)
T 1qzz_A 172 EAPADAYDWSA--VRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP 246 (374)
T ss_dssp HHHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred HHHHHhCCCCC--CCEEEEECCCcCHHHHHHHHHCCC-CEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCC
Confidence 34445544333 349999999999999999998642 35677899 9999999864 32 58898888764 444
Q ss_pred CCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~P 325 (629)
. .||+|++..+++|+.... ..+|+++.++|||||++++..+
T Consensus 247 ~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 247 V-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp C-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred C-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 3 499999999998887322 4799999999999999998765
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=118.90 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=86.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~ 282 (629)
...+.+.+.... .+|||+|||+|.++..++++... ..++++|+ +.+++.|+++. .++.+...|... ++
T Consensus 157 ~~~~~~~~~~~~---~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 230 (334)
T 2ip2_A 157 FHEIPRLLDFRG---RSFVDVGGGSGELTKAILQAEPS-ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV 230 (334)
T ss_dssp HHHHHHHSCCTT---CEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC
T ss_pred HHHHHHhCCCCC---CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC
Confidence 344555544333 59999999999999999987542 25677899 99999998752 458888888766 55
Q ss_pred CCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
+ ++||+|++..+++||.+. ...+++++.++|||||++++..+
T Consensus 231 ~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 231 P-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp C-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred C-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5 689999999999888732 23899999999999999999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=112.95 Aligned_cols=112 Identities=13% Similarity=-0.011 Sum_probs=83.5
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC----cEeEEEeecCcHHHHHHHHHc----C------CCeEEE
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI----LTMSFARRDTHEAQVQFALER----G------VPAMIG 273 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~----~~v~i~gvDiS~~~i~~A~er----g------~~~~~~ 273 (629)
....+.+.+........+|||+|||+|.++..|++... ....++++|+++.+++.|+++ + .++.+.
T Consensus 66 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 145 (227)
T 2pbf_A 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII 145 (227)
T ss_dssp HHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEE
Confidence 33444444431112234899999999999999998753 122567779999999999875 2 368888
Q ss_pred EecCCCCC----CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 274 VISSKRLP----YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 274 v~d~~~Lp----~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
.+|..... ...++||+|++...++++ +.++.++|||||.+++..++
T Consensus 146 ~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 146 HKNIYQVNEEEKKELGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp ECCGGGCCHHHHHHHCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEEE
T ss_pred ECChHhcccccCccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEcc
Confidence 88887654 456789999999888654 47889999999999998653
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.6e-10 Score=110.94 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=81.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~ 278 (629)
..++..+....+..+ ..+|||+|||+|..+..|++.......++++|+++.+++.|+++ +. ++.+..+|..
T Consensus 42 ~~~l~~l~~~~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~ 119 (221)
T 3dr5_A 42 GQLLTTLAATTNGNG--STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL 119 (221)
T ss_dssp HHHHHHHHHHSCCTT--CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH
T ss_pred HHHHHHHHHhhCCCC--CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHH
Confidence 344555554443322 23899999999999999998632223567789999999999864 33 4788887765
Q ss_pred CC-C-CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 279 RL-P-YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 279 ~L-p-~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.+ + +++++||+|++.... .+...++.++.++|||||++++.
T Consensus 120 ~~l~~~~~~~fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 120 DVMSRLANDSYQLVFGQVSP----MDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp HHGGGSCTTCEEEEEECCCT----TTHHHHHHHHHHHEEEEEEEEET
T ss_pred HHHHHhcCCCcCeEEEcCcH----HHHHHHHHHHHHHcCCCcEEEEe
Confidence 43 2 346899999986533 24567999999999999999985
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-10 Score=128.93 Aligned_cols=121 Identities=13% Similarity=0.022 Sum_probs=82.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC----------------------------------------
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI---------------------------------------- 245 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~---------------------------------------- 245 (629)
+.+...+..+....++ ..|||.+||+|.++..++..+.
T Consensus 176 e~LAa~ll~~~~~~~~--~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~ 253 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPG--TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA 253 (703)
T ss_dssp HHHHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCC--CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence 4556666666554444 3899999999999988776421
Q ss_pred -cEeEEEeecCcHHHHHHHHHc----CCC--eEEEEecCCCCC--CCCCCeeEEEecCcccccccC---HHHH---HHHH
Q 006834 246 -LTMSFARRDTHEAQVQFALER----GVP--AMIGVISSKRLP--YPARAFDMAHCSGCLIPWYMY---DGLY---LLEV 310 (629)
Q Consensus 246 -~~v~i~gvDiS~~~i~~A~er----g~~--~~~~v~d~~~Lp--~pd~sFDlV~~s~~L~h~~~d---~~~~---L~el 310 (629)
....+.|+|+++.+++.|+++ |.. +.|.+.|...+. ...++||+|+++.-+-.-..+ ...+ |.++
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 013578889999999999865 443 789999988773 334589999998754221111 1223 4455
Q ss_pred HhcccCCcEEEEEeCCCC
Q 006834 311 DRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 311 ~RvLKPGG~liis~P~~~ 328 (629)
.+.+.|||.+++.++...
T Consensus 334 lk~~~~g~~~~ilt~~~~ 351 (703)
T 3v97_A 334 MKNQFGGWNLSLFSASPD 351 (703)
T ss_dssp HHHHCTTCEEEEEESCHH
T ss_pred HHhhCCCCeEEEEeCCHH
Confidence 555668999999876443
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-10 Score=113.48 Aligned_cols=117 Identities=12% Similarity=-0.059 Sum_probs=82.6
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHcC--C-------C-------
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALERG--V-------P------- 269 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~erg--~-------~------- 269 (629)
..++.+.+.+... ...+|||+|||+|.++..+++.. .....++++|+|+.+++.|+++- . .
T Consensus 38 ~l~~~~l~~~~~~--~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGD--GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCC--SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccC--CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 3444444443322 34589999999999999998861 12346788899999999998541 1 1
Q ss_pred ------------------eE-------------EEEecCCCCCC-----CCCCeeEEEecCccccccc--------CHHH
Q 006834 270 ------------------AM-------------IGVISSKRLPY-----PARAFDMAHCSGCLIPWYM--------YDGL 305 (629)
Q Consensus 270 ------------------~~-------------~~v~d~~~Lp~-----pd~sFDlV~~s~~L~h~~~--------d~~~ 305 (629)
+. +.+.|...... ..++||+|+|+..+++... ....
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 44 77888765321 3458999999877654432 1347
Q ss_pred HHHHHHhcccCCcEEEEEeC
Q 006834 306 YLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 306 ~L~el~RvLKPGG~liis~P 325 (629)
++.++.++|+|||+++++..
T Consensus 196 ~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHhcCCCcEEEEeCc
Confidence 99999999999999999543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=116.44 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=80.5
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc-----C-CCeEEEEecCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER-----G-VPAMIGVISSKRLPYP 283 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er-----g-~~~~~~v~d~~~Lp~p 283 (629)
.+.+.+...++. +|||+|||+|.++..+++. +. ...++++|+++.+++.|+++ + .++.+..+|... +++
T Consensus 101 ~~~~~~~~~~~~--~VLD~G~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~ 176 (275)
T 1yb2_A 101 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FIS 176 (275)
T ss_dssp -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCC
T ss_pred HHHHHcCCCCcC--EEEEecCCCCHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCc
Confidence 444555544444 9999999999999999987 22 12567779999999999875 3 358888888776 667
Q ss_pred CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 284 ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
+++||+|++ +.+ ++..++.++.++|||||++++..+.
T Consensus 177 ~~~fD~Vi~-----~~~-~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 177 DQMYDAVIA-----DIP-DPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp SCCEEEEEE-----CCS-CGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred CCCccEEEE-----cCc-CHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 789999998 333 6678999999999999999999753
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-10 Score=113.49 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=84.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
......+.+.+...++. +|||+|||+|.++..|++.+. ..++++|+++.+++.|+++ + .++.+..+|. ..
T Consensus 77 ~~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~ 151 (235)
T 1jg1_A 77 PHMVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SK 151 (235)
T ss_dssp HHHHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GG
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-cc
Confidence 44556666666554444 899999999999999998753 2466779999999999875 2 2577887776 44
Q ss_pred CCCCC-CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 281 PYPAR-AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 281 p~pd~-sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+++++ .||+|++..+++++. .++.++|||||.+++..++.
T Consensus 152 ~~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 152 GFPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp CCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEecC
Confidence 55544 499999999887665 37899999999999997643
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=113.57 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=79.8
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC-CCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR-LPY 282 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~-Lp~ 282 (629)
..+..++....+ .+|||+|||+|..+..|++.......++++|+++.+++.|+++ +. .+.+.++|... ++.
T Consensus 48 ~~l~~l~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~ 125 (221)
T 3u81_A 48 QIMDAVIREYSP--SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQ 125 (221)
T ss_dssp HHHHHHHHHHCC--SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred HHHHHHHHhcCC--CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHH
Confidence 334444433333 4899999999999999998532223567789999999999874 33 48888888644 332
Q ss_pred C-----CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 P-----ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 p-----d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
. .++||+|++....+++. +...++.++ ++|||||++++..
T Consensus 126 ~~~~~~~~~fD~V~~d~~~~~~~-~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 126 LKKKYDVDTLDMVFLDHWKDRYL-PDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp TTTTSCCCCCSEEEECSCGGGHH-HHHHHHHHT-TCCCTTCEEEESC
T ss_pred HHHhcCCCceEEEEEcCCcccch-HHHHHHHhc-cccCCCeEEEEeC
Confidence 2 27899999987665554 344577777 9999999998863
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-10 Score=118.47 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=88.0
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~ 282 (629)
.+.+.+.+.... ..+|||||||+|.++..++++... ..++++|+ +.+++.|+++ +. .+.+..+|....++
T Consensus 179 ~~~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 254 (359)
T 1x19_A 179 IQLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 254 (359)
T ss_dssp HHHHHHHCCCTT--CCEEEEESCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC
T ss_pred HHHHHHhcCCCC--CCEEEEECCcccHHHHHHHHHCCC-CeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC
Confidence 445555555433 349999999999999999998542 35677799 9999999865 32 48999999888777
Q ss_pred CCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
++. |+|++..++++|.++ ...+|+++.++|||||++++..+
T Consensus 255 ~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 255 PEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 654 999999999988732 57899999999999999988763
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=122.21 Aligned_cols=95 Identities=18% Similarity=0.091 Sum_probs=79.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
..+|||||||+|.++..++++.... .++++|+ +.+++.|++. .++.+..+|... +++. ||+|++..+++||. +
T Consensus 210 ~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~-d 282 (372)
T 1fp1_D 210 ISTLVDVGGGSGRNLELIISKYPLI-KGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWS-D 282 (372)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGSC-H
T ss_pred CCEEEEeCCCCcHHHHHHHHHCCCC-eEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccCC-H
Confidence 4589999999999999999987543 5567799 8999888653 458888888876 6664 99999999998887 5
Q ss_pred HH--HHHHHHHhcccCCcEEEEEe
Q 006834 303 DG--LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 303 ~~--~~L~el~RvLKPGG~liis~ 324 (629)
+. .+|+++.++|||||.+++..
T Consensus 283 ~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 283 EKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 55 89999999999999999974
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-11 Score=123.20 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=80.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++ +. ++.+.++|...++ ++++||+|+++..+
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred CCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 34899999999999999999874 556779999999999865 33 6889999987776 56899999999988
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
++.. +....+.++.++|+|||++++.
T Consensus 155 ~~~~-~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 155 GGPD-YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SSGG-GGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCcc-hhhhHHHHHHhhcCCcceeHHH
Confidence 6654 5555778999999999997765
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.8e-10 Score=111.64 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=84.8
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC-C-eEEEEecCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV-P-AMIGVISSKRL 280 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~-~-~~~~v~d~~~L 280 (629)
....+.+.+...++. +|||+|||+|.++..+++. +.. ..++++|+++.+++.|+++ +. + +.+...|....
T Consensus 81 ~~~~i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 157 (255)
T 3mb5_A 81 DAALIVAYAGISPGD--FIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG 157 (255)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred HHHHHHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence 345666666655554 9999999999999999988 422 2567779999999999876 42 3 88888887744
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++||+|++. .. ++..++.++.++|+|||.+++..|
T Consensus 158 -~~~~~~D~v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 158 -IEEENVDHVILD-----LP-QPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp -CCCCSEEEEEEC-----SS-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred -cCCCCcCEEEEC-----CC-CHHHHHHHHHHHcCCCCEEEEEEC
Confidence 677899999983 22 566789999999999999999865
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=108.92 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=82.0
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCC-C
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRL-P 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~L-p 281 (629)
...+..++...++ .+|||+|||+|.++..|++... ...++++|+++.+++.|+++ + .++.+..+|.... +
T Consensus 60 ~~~l~~~~~~~~~--~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 136 (232)
T 3ntv_A 60 LDLIKQLIRMNNV--KNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFE 136 (232)
T ss_dssp HHHHHHHHHHHTC--CEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHH
T ss_pred HHHHHHHHhhcCC--CEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH
Confidence 3444444444333 3899999999999999998432 23667889999999999865 3 2688998887653 4
Q ss_pred -CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 282 -YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 -~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
..+++||+|++... ..+...++.++.++|||||+|++..
T Consensus 137 ~~~~~~fD~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 137 NVNDKVYDMIFIDAA----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp HHTTSCEEEEEEETT----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hhccCCccEEEEcCc----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 34689999997643 2245679999999999999998863
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.8e-10 Score=113.20 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=85.6
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecC-cHHHHHHHHHcC--------------
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDT-HEAQVQFALERG-------------- 267 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDi-S~~~i~~A~erg-------------- 267 (629)
.+...+.+.+.+......+ .+|||+|||+|.++..+++.+.. .++++|+ ++.+++.|+++.
T Consensus 62 ~~~~~l~~~l~~~~~~~~~--~~vLDlG~G~G~~~~~~a~~~~~--~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~ 137 (281)
T 3bzb_A 62 SGARALADTLCWQPELIAG--KTVCELGAGAGLVSIVAFLAGAD--QVVATDYPDPEILNSLESNIREHTANSCSSETVK 137 (281)
T ss_dssp CHHHHHHHHHHHCGGGTTT--CEEEETTCTTSHHHHHHHHTTCS--EEEEEECSCHHHHHHHHHHHHTTCC---------
T ss_pred cHHHHHHHHHHhcchhcCC--CeEEEecccccHHHHHHHHcCCC--EEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCC
Confidence 3455566666665543333 48999999999999999988752 4567799 899999998653
Q ss_pred -CCeEEEEecCCCCC--C----CCCCeeEEEecCcccccccCHHHHHHHHHhccc---C--CcEEEEEe
Q 006834 268 -VPAMIGVISSKRLP--Y----PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLR---P--GGYWILSG 324 (629)
Q Consensus 268 -~~~~~~v~d~~~Lp--~----pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK---P--GG~liis~ 324 (629)
.++.+...+..... + ++++||+|+++.+++|.. +...++.++.++|+ | ||.+++..
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 138 RASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-AHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp -CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG-GHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred CCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH-HHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 13455544432211 1 357899999999997654 77889999999999 9 99887764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-10 Score=108.27 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=76.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
.+|||+|||+|.++..++.... ...++++|+++.+++.|+++ +. ++.+...|...++ +.++||+|++...
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~~--- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS---
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEecc---
Confidence 4899999999999999998732 12567789999999999864 33 4888888887766 4678999997542
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+...++.++.++|+|||++++..
T Consensus 142 --~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 --ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 256789999999999999999984
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-10 Score=112.40 Aligned_cols=99 Identities=8% Similarity=-0.055 Sum_probs=73.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCC---CCCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKR---LPYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~---Lp~pd~sFDlV~~s~~ 295 (629)
+.+|||+|||+|.++..|++.. .. ..++++|+++.+++.+.+. ..++.+..+|... +++.+++||+|++...
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA 156 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence 3489999999999999999872 21 2467779997765544332 2678888888876 4556789999998554
Q ss_pred ccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.......++.++.++|||||+++++.+
T Consensus 157 ---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 157 ---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp ---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 121234568899999999999999754
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-09 Score=109.22 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=76.2
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC-CCCC--CCCeeEEEecC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR-LPYP--ARAFDMAHCSG 294 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~-Lp~p--d~sFDlV~~s~ 294 (629)
.+|||||||+|..+..|++.......++++|+++.+++.|+++ +. ++.+.++|... ++.. .++||+|++..
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~ 144 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDA 144 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence 4899999999999999998743223567789999999999875 33 58888888755 3432 35899999855
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ..+...++.++.++|||||++++...
T Consensus 145 ~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 145 D----KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp C----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred c----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 3 22456799999999999999998743
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.05 E-value=5e-10 Score=110.60 Aligned_cols=113 Identities=14% Similarity=0.086 Sum_probs=83.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-----EeEEEeecCcHHHHHHHHHc----------CCCe
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-----TMSFARRDTHEAQVQFALER----------GVPA 270 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-----~v~i~gvDiS~~~i~~A~er----------g~~~ 270 (629)
......+.+.+........+|||+|||+|.++..|++.... ...++++|+++.+++.|+++ ..++
T Consensus 68 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v 147 (227)
T 1r18_A 68 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 147 (227)
T ss_dssp HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred hHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce
Confidence 44455555665322223348999999999999999885211 01467779999999999865 2367
Q ss_pred EEEEecCCCCCCCC-CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 271 MIGVISSKRLPYPA-RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 271 ~~~v~d~~~Lp~pd-~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
.+...|... ++++ ++||+|++...++++. .++.++|||||.+++...+
T Consensus 148 ~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 148 LIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEESCGGG-CCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEESC
T ss_pred EEEECCccc-CCCcCCCccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEec
Confidence 888888765 4554 7899999999886654 7889999999999998653
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.1e-10 Score=109.66 Aligned_cols=106 Identities=17% Similarity=0.034 Sum_probs=83.5
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~ 282 (629)
...+.+.+...++. +|||+|||+|.++..+++.+. .++++|+++.+++.|+++ + .++.+...|.....+
T Consensus 80 ~~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 154 (248)
T 2yvl_A 80 SFYIALKLNLNKEK--RVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV 154 (248)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc
Confidence 34556666555444 899999999999999998843 567779999999999875 3 357888888776543
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++++||+|++.. . ++..++.++.++|+|||.+++..+
T Consensus 155 ~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 155 PEGIFHAAFVDV-----R-EPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp CTTCBSEEEECS-----S-CGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CCCcccEEEECC-----c-CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 667899999732 2 566789999999999999999975
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.4e-10 Score=116.92 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=85.1
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYP 283 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~p 283 (629)
+.+.+.+.... ..+|||||||+|.++..+++.... +.++++|+ +.+++.|+++ +. ++.+...|... +++
T Consensus 173 ~~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 247 (360)
T 1tw3_A 173 DAPAAAYDWTN--VRHVLDVGGGKGGFAAAIARRAPH-VSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP 247 (360)
T ss_dssp HHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred HHHHHhCCCcc--CcEEEEeCCcCcHHHHHHHHhCCC-CEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCC
Confidence 34445544433 348999999999999999988643 35667799 8999998864 32 58888888764 444
Q ss_pred CCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEeCC
Q 006834 284 ARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~P~ 326 (629)
. .||+|++..+++|+.... ..+++++.++|||||++++..+.
T Consensus 248 ~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 248 R-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp S-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred C-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 4 499999999998887322 47999999999999999998654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-10 Score=119.25 Aligned_cols=97 Identities=15% Similarity=-0.027 Sum_probs=79.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
..+|||||||+|.++..|+++.... .++++|+ +.+++.|+++ .++.+..+|... +++.+ |+|++..++|||...
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~ 277 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKYPSI-NAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDE 277 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHH
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHH
Confidence 4599999999999999999976432 4567799 8888887654 568999999876 77754 999999999989743
Q ss_pred -HHHHHHHHHhcccCCcEEEEEeC
Q 006834 303 -DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 303 -~~~~L~el~RvLKPGG~liis~P 325 (629)
...+|++++++|||||++++...
T Consensus 278 ~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 278 HCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 24799999999999999999764
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.3e-10 Score=107.62 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=71.3
Q ss_pred CeEEEeCCCCchHHHHHHHcCCc-EeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC---------------------
Q 006834 224 RTAVDTGCGVASWGAYLLKRDIL-TMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--------------------- 281 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~-~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--------------------- 281 (629)
.+|||+|||+|.++..++++... ...++++|+++.+ ...++.+.++|....+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence 48999999999999999987531 2367788999831 1235788888887766
Q ss_pred ----CCCCCeeEEEecCcccccc---cCH-------HHHHHHHHhcccCCcEEEEEe
Q 006834 282 ----YPARAFDMAHCSGCLIPWY---MYD-------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 ----~pd~sFDlV~~s~~L~h~~---~d~-------~~~L~el~RvLKPGG~liis~ 324 (629)
+++++||+|+|...+++.. .+. ..++.++.++|||||.|++..
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 5678999999987763321 111 137899999999999999964
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=114.85 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=76.8
Q ss_pred CeEEEeCCCCchHHHHHHHc----CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC---CCCC-CCeeEEEecCc
Q 006834 224 RTAVDTGCGVASWGAYLLKR----DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL---PYPA-RAFDMAHCSGC 295 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~----g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L---p~pd-~sFDlV~~s~~ 295 (629)
.+|||||||+|..+..|++. +. ...++++|+++.+++.|+....++.+.++|...+ ++.. .+||+|++...
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~-~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGI-DCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTC-CCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCC-CCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 48999999999999999986 22 2356777999999998875456789999998774 5443 47999998654
Q ss_pred ccccccCHHHHHHHHHh-cccCCcEEEEEe
Q 006834 296 LIPWYMYDGLYLLEVDR-VLRPGGYWILSG 324 (629)
Q Consensus 296 L~h~~~d~~~~L~el~R-vLKPGG~liis~ 324 (629)
| .+...+|.++.| +|||||+|++..
T Consensus 162 --~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 162 --H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp --C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred --h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 3 256789999998 999999999974
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.1e-10 Score=118.19 Aligned_cols=97 Identities=18% Similarity=0.000 Sum_probs=80.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
..+|||||||+|.++..++++.... .++++|+ +.+++.|+++ .++.+..+|... |++.+ |+|++..++|+|..+
T Consensus 202 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~ 275 (364)
T 3p9c_A 202 LGTLVDVGGGVGATVAAIAAHYPTI-KGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQ 275 (364)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCC-eEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHH
Confidence 4589999999999999999876432 4567799 8888877654 568999999877 77754 999999999999733
Q ss_pred -HHHHHHHHHhcccCCcEEEEEeC
Q 006834 303 -DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 303 -~~~~L~el~RvLKPGG~liis~P 325 (629)
...+|++++++|||||++++...
T Consensus 276 ~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 276 HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 35799999999999999999753
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-10 Score=109.52 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=74.7
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-C-CC----CCCeeEEE
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-P-YP----ARAFDMAH 291 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p-~p----d~sFDlV~ 291 (629)
.+|||+|||+|.++..|++.......++++|+++.+++.|+++ +. .+.+.++|.... + +. .++||+|+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~ 145 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIY 145 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEE
Confidence 3899999999999999998733223567789999999999875 32 488888876432 2 11 17899999
Q ss_pred ecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+... ..+...++.++.++|||||++++..
T Consensus 146 ~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 146 IDAD----KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp ECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCC----HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 6543 3346779999999999999999974
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=109.99 Aligned_cols=113 Identities=10% Similarity=-0.063 Sum_probs=78.3
Q ss_pred HHHHHHHHhhcC---ccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHH----HHHHHcCCCeEEEEecCC
Q 006834 206 DAYIDNINELIP---LTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQV----QFALERGVPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~---~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i----~~A~erg~~~~~~v~d~~ 278 (629)
......+.+.+. ..++ .+|||+|||+|.++..+++.....-.++++|+++.|+ +.|+++ .++.+.++|..
T Consensus 59 skla~~ll~~l~~~~l~~g--~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~ 135 (232)
T 3id6_C 59 SKLAGAILKGLKTNPIRKG--TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADAR 135 (232)
T ss_dssp CHHHHHHHTTCSCCSCCTT--CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTT
T ss_pred HHHHHHHHhhhhhcCCCCC--CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccc
Confidence 444555656554 3444 4999999999999999998622112567779999875 344444 57888888876
Q ss_pred CCC---CCCCCeeEEEecCcccccccCHHH-HHHHHHhcccCCcEEEEEeC
Q 006834 279 RLP---YPARAFDMAHCSGCLIPWYMYDGL-YLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp---~pd~sFDlV~~s~~L~h~~~d~~~-~L~el~RvLKPGG~liis~P 325 (629)
... ...++||+|++.... + +... ++..+.++|||||.|+++..
T Consensus 136 ~~~~~~~~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 136 FPQSYKSVVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp CGGGTTTTCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cchhhhccccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 542 124689999987644 2 4444 45566779999999999853
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=109.62 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=77.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc------------C-CCeEEEEecCCC-CC--CCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER------------G-VPAMIGVISSKR-LP--YPARA 286 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er------------g-~~~~~~v~d~~~-Lp--~pd~s 286 (629)
..+|||||||+|.++..|++.+.. ..++++|+|+.+++.|+++ + .++.+..+|... ++ ++.++
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 348999999999999999998753 2567889999999998753 3 368899998876 66 77889
Q ss_pred eeEEEecCcccccccC--------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 287 FDMAHCSGCLIPWYMY--------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d--------~~~~L~el~RvLKPGG~liis~P 325 (629)
||.|+....- .|... ...++.++.++|+|||+|++.+.
T Consensus 129 ~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 129 LSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 9999854321 22100 14799999999999999999753
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-10 Score=120.33 Aligned_cols=114 Identities=12% Similarity=0.031 Sum_probs=83.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHH-------HHc----C---CCe
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFA-------LER----G---VPA 270 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A-------~er----g---~~~ 270 (629)
...+..+.+.+...++. +|||+|||+|.++..+++. +.. .++|+|+++.+++.| +++ + .++
T Consensus 228 p~~v~~ml~~l~l~~g~--~VLDLGCGsG~la~~LA~~~g~~--~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV 303 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 303 (433)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence 44556666666655444 9999999999999999986 322 467779999998888 543 4 357
Q ss_pred EEEEecCCCC--CC--CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 271 MIGVISSKRL--PY--PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 271 ~~~v~d~~~L--p~--pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+.+++.... ++ ..++||+|+++.++ + ..+...+|.++.++|||||.+++..+
T Consensus 304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~-~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 304 EFSLKKSFVDNNRVAELIPQCDVILVNNFL-F-DEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTT-C-CHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EEEEcCccccccccccccCCCCEEEEeCcc-c-cccHHHHHHHHHHhCCCCeEEEEeec
Confidence 7777654422 22 24789999997666 2 23567789999999999999998743
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=116.25 Aligned_cols=118 Identities=16% Similarity=0.000 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~L 280 (629)
..+...+..++...++. +|||+|||+|.++..++..+.....++++|+++.+++.|+++ +. .+.+.+.|...+
T Consensus 189 ~~la~~l~~~~~~~~~~--~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 189 PVLAQALLRLADARPGM--RVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHHHTTCCTTC--CEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred HHHHHHHHHHhCCCCCC--EEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence 44556666666554444 899999999999999998651112467779999999999875 33 589999999998
Q ss_pred CCCCCCeeEEEecCcccccccC-------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMY-------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d-------~~~~L~el~RvLKPGG~liis~P 325 (629)
+.+.+.||+|+++..+.....+ ...++.++.++|||||.+++.++
T Consensus 267 ~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 267 PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp GGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred ccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 8777889999997655322211 25689999999999999999865
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.4e-10 Score=116.37 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=78.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCCCC--CCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRLPY--PARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~Lp~--pd~sFDlV~ 291 (629)
+.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|...++. ++++||+|+
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 45899999999999999998732 236778899999999998753 458888888766543 478999999
Q ss_pred ecCcccccccC---HHHHHHHHHhcccCCcEEEEEeC
Q 006834 292 CSGCLIPWYMY---DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 292 ~s~~L~h~~~d---~~~~L~el~RvLKPGG~liis~P 325 (629)
+.......+.. ...+++++.|+|||||.+++...
T Consensus 175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 97655332211 15799999999999999999864
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=115.73 Aligned_cols=107 Identities=15% Similarity=0.010 Sum_probs=79.6
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH--c--CCCeEEEEecCCCCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE--R--GVPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e--r--g~~~~~~v~d~~~Lp~pd~s 286 (629)
.+.+.+.... ..+|||||||+|.++..++++.... .++++|+++ ++..++. . ...+.+..+|.. .+++ +
T Consensus 175 ~~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~-~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~ 247 (348)
T 3lst_A 175 ILARAGDFPA--TGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAE-VVARHRLDAPDVAGRWKVVEGDFL-REVP--H 247 (348)
T ss_dssp HHHHHSCCCS--SEEEEEETCTTSHHHHHHHHHCTTE-EEEEEECHH-HHTTCCCCCGGGTTSEEEEECCTT-TCCC--C
T ss_pred HHHHhCCccC--CceEEEECCccCHHHHHHHHHCCCC-EEEEecCHH-HhhcccccccCCCCCeEEEecCCC-CCCC--C
Confidence 4444444333 4599999999999999999976543 567789954 4431110 1 235888888885 4455 8
Q ss_pred eeEEEecCcccccccCH--HHHHHHHHhcccCCcEEEEEeC
Q 006834 287 FDMAHCSGCLIPWYMYD--GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~--~~~L~el~RvLKPGG~liis~P 325 (629)
||+|++..++|||. ++ ..+|+++.++|||||+|++..+
T Consensus 248 ~D~v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 248 ADVHVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp CSEEEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred CcEEEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999998887 44 5899999999999999999764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-09 Score=110.11 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=83.9
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp 281 (629)
+..+.+.+...++. +|||+|||+|.++..+++. +.. ..++++|+++.+++.|+++ +. ++.+...|....
T Consensus 101 ~~~i~~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 176 (277)
T 1o54_A 101 SSFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG- 176 (277)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-
T ss_pred HHHHHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-
Confidence 34555666555544 8999999999999999987 422 2567779999999999875 32 578888887665
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++||+|++.. + ++..++.++.++|+|||.+++..+
T Consensus 177 ~~~~~~D~V~~~~-----~-~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 177 FDEKDVDALFLDV-----P-DPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp CSCCSEEEEEECC-----S-CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccCCccCEEEECC-----c-CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 6677999999832 2 566889999999999999999865
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.01 E-value=9.9e-10 Score=108.17 Aligned_cols=114 Identities=6% Similarity=-0.087 Sum_probs=80.0
Q ss_pred HHHHHHHHhhcCcc-CCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLT-GGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~-~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~L 280 (629)
......+...+... ...+.+|||+|||+|.++..|++. +.. ..++++|+++.+++.++++ ..++.+..+|....
T Consensus 56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~ 134 (227)
T 1g8a_A 56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKP 134 (227)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCG
T ss_pred hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCc
Confidence 33445554434321 122348999999999999999986 321 2467779999999888764 24688888887663
Q ss_pred C---CCCCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEe
Q 006834 281 P---YPARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p---~pd~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~ 324 (629)
. ...++||+|++... ..+. ..++.++.++|||||++++..
T Consensus 135 ~~~~~~~~~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 135 EEYRALVPKVDVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GGGTTTCCCEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcccCCceEEEECCC----CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 12468999998654 2233 456999999999999999984
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.7e-10 Score=109.53 Aligned_cols=110 Identities=11% Similarity=0.118 Sum_probs=83.6
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL 280 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L 280 (629)
.....+..++...++. +|||+|||+|.++..|++... ...++++|+++.+++.|+++ +. .+.+..+|....
T Consensus 41 ~~~~~l~~~~~~~~~~--~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 117 (233)
T 2gpy_A 41 LGMESLLHLLKMAAPA--RILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117 (233)
T ss_dssp HHHHHHHHHHHHHCCS--EEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred HHHHHHHHHHhccCCC--EEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 3344455554444444 899999999999999998743 23567789999999999876 33 478888877653
Q ss_pred -CCC--CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 281 -PYP--ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 281 -p~p--d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+.. +++||+|++.... .+...++.++.++|||||.+++.
T Consensus 118 ~~~~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 118 GEKLELYPLFDVLFIDAAK----GQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp HHHHTTSCCEEEEEEEGGG----SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHhcccCCCccEEEECCCH----HHHHHHHHHHHHHcCCCeEEEEE
Confidence 432 5789999987654 25678999999999999999997
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-09 Score=103.76 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=75.1
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-C-CC---CCCeeEEEe
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-P-YP---ARAFDMAHC 292 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p-~p---d~sFDlV~~ 292 (629)
.+|||+|||+|.++..|++.......++++|+++.+++.|+++ +. .+.+.++|.... + ++ .++||+|++
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~ 139 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFI 139 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEE
Confidence 4899999999999999998743223667889999999999865 33 488888886442 1 11 267999998
Q ss_pred cCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 293 SGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 293 s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.... .....++.++.++|||||++++...
T Consensus 140 d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 140 DADK----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred cCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 6542 2446799999999999998888743
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-10 Score=117.89 Aligned_cols=96 Identities=13% Similarity=0.008 Sum_probs=79.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
..+|||||||+|.++..++++... ..++++|+ +.+++.|++. .++.+..+|... ++++ ||+|++..+++||. +
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~-d 261 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPK-LKCIVFDR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWT-D 261 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGSC-H
T ss_pred CceEEEeCCCccHHHHHHHHHCCC-CeEEEeeC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccCC-H
Confidence 358999999999999999987543 25677899 9999988764 348888888765 5553 99999999999997 5
Q ss_pred HH--HHHHHHHhcccC---CcEEEEEeC
Q 006834 303 DG--LYLLEVDRVLRP---GGYWILSGP 325 (629)
Q Consensus 303 ~~--~~L~el~RvLKP---GG~liis~P 325 (629)
+. .+|+++.++||| ||++++..+
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 55 899999999999 999999764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-10 Score=107.69 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=75.1
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-CCCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-PYPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p~pd~sFDlV~~s~~L 296 (629)
.+|||+|||+|..+..|++.......++++|+++.+++.|+++ +. .+.+..+|.... +..++ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~- 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD- 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT-
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC-
Confidence 4899999999999999998743223567789999999999865 32 478888887543 54456 999998642
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
..+...++.++.++|||||++++..
T Consensus 136 ---~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 136 ---VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ---TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred ---hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2356789999999999999999863
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=102.59 Aligned_cols=93 Identities=11% Similarity=-0.062 Sum_probs=72.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++..++.+.++|...++ ++||+|+++..++++...
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC------
T ss_pred CCEEEEEeCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCc
Confidence 448999999999999999988542 467779999999999988667889999988765 689999999998777532
Q ss_pred -HHHHHHHHHhcccCCcEEEEE
Q 006834 303 -DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 303 -~~~~L~el~RvLKPGG~liis 323 (629)
...++.++.++| |+ +++.
T Consensus 127 ~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 127 SDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp -CHHHHHHHHHHE--EE-EEEE
T ss_pred hhHHHHHHHHHhc--Cc-EEEE
Confidence 357899999998 44 4444
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-10 Score=116.09 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=79.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC----------------CCeE
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG----------------VPAM 271 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg----------------~~~~ 271 (629)
...+.+.+...++. +|||+|||+|.++..|++. +.. ..++++|+++.+++.|+++. .++.
T Consensus 94 ~~~~l~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~ 170 (336)
T 2b25_A 94 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 170 (336)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence 44555555555444 9999999999999999987 432 25677799999999998741 3688
Q ss_pred EEEecCCCC--CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 272 IGVISSKRL--PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 272 ~~v~d~~~L--p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+..+|...+ ++++++||+|++... ++..++.++.++|||||.|++..+
T Consensus 171 ~~~~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 171 FIHKDISGATEDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp EEESCTTCCC-------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred EEECChHHcccccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 888888776 466778999998542 233479999999999999998864
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=121.16 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~ 279 (629)
..+.+.+.+.+....+ .+|||||||+|.++..+++.+.. .++++|+|+ +++.|+++ + .++.+..+|...
T Consensus 144 ~~~~~~il~~l~~~~~--~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 144 GTYQRAILQNHTDFKD--KIVLDVGCGSGILSFFAAQAGAR--KIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHHTGGGTTT--CEEEEESCSTTHHHHHHHHTTCS--EEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHHhhhhcCC--CEEEEecCcccHHHHHHHHcCCC--EEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 3445556555544333 48999999999999999987542 567779998 88888764 3 358999999888
Q ss_pred CCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
++++ ++||+|++...++|+..+ ....+.++.++|||||++++.
T Consensus 219 ~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 219 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7765 589999998877676522 345777899999999999864
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-09 Score=111.33 Aligned_cols=113 Identities=17% Similarity=0.053 Sum_probs=82.5
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARA 286 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~s 286 (629)
+...+...++. +|||+|||+|..+..|++.......++++|+++.+++.++++ +. ++.+.+.|...++..+++
T Consensus 110 ~~~~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 187 (315)
T 1ixk_A 110 PPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE 187 (315)
T ss_dssp HHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred HHHHhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccccc
Confidence 34445554444 899999999999999998643223567789999999999865 43 688888888877655678
Q ss_pred eeEEEecC------ccccccc-----C----------HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 287 FDMAHCSG------CLIPWYM-----Y----------DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 287 FDlV~~s~------~L~h~~~-----d----------~~~~L~el~RvLKPGG~liis~P~ 326 (629)
||+|++.. ++.+.++ . ...+|.++.++|||||++++++..
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 99999832 2211110 0 147899999999999999998653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-09 Score=105.88 Aligned_cols=111 Identities=15% Similarity=0.122 Sum_probs=80.7
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC-C
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR-L 280 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~-L 280 (629)
....+..++...++. +|||+|||+|.++..|++.......++++|+++.+++.|+++ +. .+.+..+|... +
T Consensus 48 ~~~~l~~l~~~~~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 125 (239)
T 2hnk_A 48 EGQFLNILTKISGAK--RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETL 125 (239)
T ss_dssp HHHHHHHHHHHHTCS--EEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHHhhCcC--EEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHH
Confidence 344444444433333 899999999999999998743223567789999999999875 32 37787777543 1
Q ss_pred C--------------CCC--CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 P--------------YPA--RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p--------------~pd--~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+ |++ ++||+|++..... +...++.++.++|||||++++..
T Consensus 126 ~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~----~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 126 QVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE----NYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG----GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHhhcccccccccccCCCCCcCEEEEeCCHH----HHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 333 7899999875432 34578999999999999999874
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=104.51 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=97.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccC---CCCC-cccceeeccccccccC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAF---STYP-RTYDLIHASGVFSIYQ 556 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f---~~yp-~t~Dl~H~~~~fs~~~ 556 (629)
.+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.+++.+...+.-.+.+ ...+ .+||+|.+..++.
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~--- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL--- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC---
T ss_pred CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh---
Confidence 6799999999999999999865 5666677778999999997655554222223 3334 5699999988777
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH--------------------------------HHHHHHHHHHhcCCCeEEEe
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDTV--------------------------------EMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------------------------~~~~~~~~~~~~l~w~~~~~ 604 (629)
..+...+|.++-|+|||||++++.+.. -....+.++++.-.+++.-+
T Consensus 128 -~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 206 (227)
T 3e8s_A 128 -HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSL 206 (227)
T ss_dssp -SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEE
T ss_pred -hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEE
Confidence 346689999999999999999997531 03578888889888887654
Q ss_pred ecCCCCC---CCceEEEEEec
Q 006834 605 DHESGPF---NPEKILFAAKT 622 (629)
Q Consensus 605 ~~e~~~~---~~e~~l~~~K~ 622 (629)
.....+. ...-+++++|+
T Consensus 207 ~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 207 QEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp ECCCCTTCSSCSCEEEEEEEC
T ss_pred ecCCCCCCCCceeEEEEeecC
Confidence 3321111 12456777764
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.4e-09 Score=106.37 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=84.1
Q ss_pred chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecC
Q 006834 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISS 277 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~ 277 (629)
....+++.+.+.+....+ .+|||+|||+|.++..|+.. . ...++++|+|+.+++.|+++ +. .+.+.+.|.
T Consensus 107 ~te~lv~~~l~~~~~~~~--~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~ 182 (284)
T 1nv8_A 107 ETEELVELALELIRKYGI--KTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF 182 (284)
T ss_dssp THHHHHHHHHHHHHHHTC--CEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred hHHHHHHHHHHHhcccCC--CEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc
Confidence 345666666666643333 38999999999999999988 2 23567779999999999875 33 388888887
Q ss_pred CCCCCCCCCe---eEEEecCcccccc--------cC----------HHHHHHHHH-hcccCCcEEEEEeC
Q 006834 278 KRLPYPARAF---DMAHCSGCLIPWY--------MY----------DGLYLLEVD-RVLRPGGYWILSGP 325 (629)
Q Consensus 278 ~~Lp~pd~sF---DlV~~s~~L~h~~--------~d----------~~~~L~el~-RvLKPGG~liis~P 325 (629)
... ++ ++| |+|+++..++... .+ ...+++++. +.|+|||++++..+
T Consensus 183 ~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 183 LEP-FK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp TGG-GG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred hhh-cc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 652 22 578 9999974332111 01 126899999 99999999999753
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.6e-10 Score=125.98 Aligned_cols=99 Identities=11% Similarity=0.020 Sum_probs=79.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC--CCCCCCeeEEEecC
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL--PYPARAFDMAHCSG 294 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L--p~pd~sFDlV~~s~ 294 (629)
.+.+|||||||.|.++..|+++|..+ +|+|.++.+|+.|+.+ + .++.|.+.+++.+ .+.+++||+|+|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V---~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATI---VGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEE---EEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEE---EEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 45689999999999999999999854 5669999999998853 3 5689999988877 46788999999999
Q ss_pred cccccccCHH--HHHHHHHhcccCCcEEEEEe
Q 006834 295 CLIPWYMYDG--LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~h~~~d~~--~~L~el~RvLKPGG~liis~ 324 (629)
+++|+. ++. ..+..+.+.|+++|..++..
T Consensus 143 ~~ehv~-~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 143 VFHHIV-HLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp CHHHHH-HHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred chhcCC-CHHHHHHHHHHHHHhccccceeeEE
Confidence 999997 543 34556777788877655543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=110.03 Aligned_cols=97 Identities=9% Similarity=-0.043 Sum_probs=75.1
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-CCC-----CCCeeEEE
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-PYP-----ARAFDMAH 291 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p~p-----d~sFDlV~ 291 (629)
.+|||+|||+|..+..|++.......++++|+++.+++.|+++ +. ++.+.++|.... +.. +++||+|+
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~ 141 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIF 141 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEE
Confidence 4899999999999999998643233567789999998887764 33 588888887543 221 47899999
Q ss_pred ecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+... ..+...++.++.++|||||++++..
T Consensus 142 ~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 142 IDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 8654 2245678999999999999999973
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=112.38 Aligned_cols=117 Identities=10% Similarity=0.003 Sum_probs=81.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCC--chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGV--ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG-----VPAMIGVISS 277 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGt--G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~ 277 (629)
..+.....+++.... ..++|||||||+ +..+..++++ .. ...++++|.|+.|++.|+++- .++.|.++|.
T Consensus 63 r~fl~rav~~l~~~~-g~~q~LDLGcG~pT~~~~~~la~~~~P-~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~ 140 (277)
T 3giw_A 63 RDWMNRAVAHLAKEA-GIRQFLDIGTGIPTSPNLHEIAQSVAP-ESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHTS-CCCEEEEESCCSCCSSCHHHHHHHHCT-TCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT
T ss_pred HHHHHHHHHHhcccc-CCCEEEEeCCCCCcccHHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc
Confidence 344555555554221 245899999997 3344555443 22 236777899999999998762 2478999998
Q ss_pred CCCC----CC--CCCee-----EEEecCcccccccC--HHHHHHHHHhcccCCcEEEEEe
Q 006834 278 KRLP----YP--ARAFD-----MAHCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 278 ~~Lp----~p--d~sFD-----lV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~liis~ 324 (629)
..++ .+ .++|| .|+++.+|||+.+. +..++.++.+.|+|||+|+++.
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 7752 11 34565 58888989776643 4689999999999999999985
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.8e-09 Score=105.38 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=77.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|.++..+++.+. ...++++|+++.+++.|+++ + .++.+..+|...++. .++||+|++....
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-
T ss_pred CCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-
Confidence 34899999999999999999853 22467779999999999864 3 357888888877743 6789999987654
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+...++.++.++|+|||.++++.
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~ 219 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHE 219 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEE
Confidence 45678999999999999999875
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-09 Score=112.72 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=77.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-C-CCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-P-YPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p-~pd~sFDlV~ 291 (629)
+.+|||||||+|.++..|+++.. ...++++|+++.+++.|+++. .++.+.++|.... + +++++||+|+
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 45899999999999999998742 236778899999999998752 3688888887553 2 3467999999
Q ss_pred ecCcccccc--cC--HHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWY--MY--DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~--~d--~~~~L~el~RvLKPGG~liis~ 324 (629)
+.... ++. .. ...++.++.++|+|||.|++..
T Consensus 200 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 85432 221 11 3679999999999999999974
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=112.48 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=77.3
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCC--CCCCCCeeEEEecCcc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRL--PYPARAFDMAHCSGCL 296 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~L--p~pd~sFDlV~~s~~L 296 (629)
.+|||||||+|.++.+++++.... .++++|+++.+++.|+++. .++.+.+.|...+ .+++++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 389999999999999999853322 5778899999999999863 3588888887654 3456899999985433
Q ss_pred ccccc---CHHHHHHHHHhcccCCcEEEEEe
Q 006834 297 IPWYM---YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 297 ~h~~~---d~~~~L~el~RvLKPGG~liis~ 324 (629)
..... ....+++++.++|+|||+|++..
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 21111 12689999999999999999874
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-09 Score=113.34 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=81.6
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cC--CCeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RG--VPAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg--~~~~~~v~d~~ 278 (629)
...|.+.|.+......++ +|||||||+|.++...++.|.. .++++|.|+ +++.|++ ++ ..+.+..++..
T Consensus 68 t~aY~~Ai~~~~~~~~~k--~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~ 142 (376)
T 4hc4_A 68 TDAYRLGILRNWAALRGK--TVLDVGAGTGILSIFCAQAGAR--RVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVE 142 (376)
T ss_dssp HHHHHHHHHTTHHHHTTC--EEEEETCTTSHHHHHHHHTTCS--EEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHhCHHhcCCC--EEEEeCCCccHHHHHHHHhCCC--EEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeee
Confidence 456666665443333444 8999999999999988888865 456779885 6777764 34 35888888988
Q ss_pred CCCCCCCCeeEEEec---CcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 279 RLPYPARAFDMAHCS---GCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s---~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.+.++ ++||+|+|- .++ ........++....|+|||||.++-.
T Consensus 143 ~~~lp-e~~DvivsE~~~~~l-~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 143 TVELP-EQVDAIVSEWMGYGL-LHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TCCCS-SCEEEEECCCCBTTB-TTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred eecCC-ccccEEEeecccccc-cccchhhhHHHHHHhhCCCCceECCc
Confidence 88776 689999983 333 22224677889999999999998753
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-09 Score=103.79 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=74.9
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC----CCCCC--CCeeEEE
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR----LPYPA--RAFDMAH 291 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~----Lp~pd--~sFDlV~ 291 (629)
.+|||+|||+|..+..|++.......++++|+++.+++.|+++ +. .+.+.+++... ++..+ ++||+|+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~ 153 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIF 153 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEE
Confidence 3899999999999999998743223567789999999999865 33 47788777532 33333 7899999
Q ss_pred ecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+.... .+...++.++.++|||||++++..
T Consensus 154 ~d~~~----~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 154 IDADK----RNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp ECSCG----GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred ECCCH----HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 86542 245679999999999999999974
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-09 Score=108.39 Aligned_cols=112 Identities=9% Similarity=-0.034 Sum_probs=82.2
Q ss_pred hhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCC----CC
Q 006834 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPY----PA 284 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~----pd 284 (629)
.++...++. +|||+|||+|..+..|++.......++++|+++.+++.++++ +. ++.+...|...++. ..
T Consensus 77 ~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 77 IVLNPREDD--FILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp HHHCCCTTC--EEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTT
T ss_pred HHhCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcc
Confidence 344444444 899999999999999998532223567789999999998865 43 68888888776654 36
Q ss_pred CCeeEEEecCccc-----------------ccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 285 RAFDMAHCSGCLI-----------------PWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 285 ~sFDlV~~s~~L~-----------------h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
++||+|++..... ........+|.++.++|||||.+++++...
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 7899999852211 112345789999999999999999987544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-09 Score=108.10 Aligned_cols=100 Identities=10% Similarity=0.060 Sum_probs=77.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCC-CCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKR-LPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~-Lp~pd~sFDlV~~ 292 (629)
+++|||+|||+|.++..++++.. ...++++|+++.+++.|+++. .++.+..+|... ++..+++||+|++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 45899999999999999998721 235677899999999998752 358888888755 3444678999999
Q ss_pred cCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
.... ++... ...+++++.++|+|||.+++..
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5543 33211 2579999999999999999974
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-09 Score=102.40 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=74.6
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCC-C-CCC----CCeeEEE
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRL-P-YPA----RAFDMAH 291 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~L-p-~pd----~sFDlV~ 291 (629)
.+|||+|||+|.++..|++.......++++|+++.+++.|+++ + .++.+..+|.... + +++ ++||+|+
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~ 150 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV 150 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEE
Confidence 4899999999999999998643223667889999999999865 3 3578888776432 1 211 6899999
Q ss_pred ecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+... ..+...++.++.++|||||++++..
T Consensus 151 ~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 151 VDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp ECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 8653 2245679999999999999999974
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-08 Score=107.79 Aligned_cols=113 Identities=15% Similarity=0.014 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~ 279 (629)
......+..+. ..++ .+|||+|||+|.++..++..+.. ..++++|+++.+++.|+++ +. .+.+.++|...
T Consensus 204 ~~la~~l~~~~-~~~~--~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~ 279 (373)
T 3tm4_A 204 ASIANAMIELA-ELDG--GSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ 279 (373)
T ss_dssp HHHHHHHHHHH-TCCS--CCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred HHHHHHHHHhh-cCCC--CEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 44555555555 3333 48999999999999999998752 1456779999999999875 43 68999999999
Q ss_pred CCCCCCCeeEEEecCcccccccC-------HHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMY-------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d-------~~~~L~el~RvLKPGG~liis~ 324 (629)
+++++++||+|+++..+.....+ ...++.++.++| ||.+++..
T Consensus 280 ~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 280 LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 99888999999997765322211 146889999999 55555543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-09 Score=112.52 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=68.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC-------CeEEE--EecCCCCCCCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV-------PAMIG--VISSKRLPYPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~-------~~~~~--v~d~~~Lp~pd~sFDlV~~s 293 (629)
+.+|||+|||+|.++..++++ .. ++++|+++ |+..++++.. ++.+. ++|...++ +++||+|+|.
T Consensus 83 g~~VLDlGcGtG~~s~~la~~-~~---V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd 155 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQ-PN---VREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCD 155 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTS-TT---EEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred CCEEEEeccCCCHHHHHHHHc-CC---EEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEEC
Confidence 448999999999999999988 33 45669998 5444433321 56777 78887765 6899999997
Q ss_pred Ccccccc---cCHH---HHHHHHHhcccCCc--EEEEEe
Q 006834 294 GCLIPWY---MYDG---LYLLEVDRVLRPGG--YWILSG 324 (629)
Q Consensus 294 ~~L~h~~---~d~~---~~L~el~RvLKPGG--~liis~ 324 (629)
.+ ++.. .+.. .+|.++.++||||| .|++..
T Consensus 156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 66 2221 0111 37899999999999 999864
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=110.87 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=67.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCC-------CeEEE--EecCCCCCCCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGV-------PAMIG--VISSKRLPYPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~-------~~~~~--v~d~~~Lp~pd~sFDlV~~s 293 (629)
+.+|||+|||+|.++..++++ .. ++++|+++ ++..++++.. ++.+. ++|...++ +++||+|+|.
T Consensus 75 g~~VLDlGcGtG~~s~~la~~-~~---V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd 147 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASR-PH---VMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCD 147 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTS-TT---EEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCEEEEeCcCCCHHHHHHHHc-Cc---EEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEe
Confidence 348999999999999999988 33 45669998 5333322221 46777 77887765 6899999997
Q ss_pred Cccccccc---CHH---HHHHHHHhcccCCc--EEEEEe
Q 006834 294 GCLIPWYM---YDG---LYLLEVDRVLRPGG--YWILSG 324 (629)
Q Consensus 294 ~~L~h~~~---d~~---~~L~el~RvLKPGG--~liis~ 324 (629)
.+ ++... +.. .+|.++.++||||| .|++..
T Consensus 148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 66 22210 111 37899999999999 999865
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.1e-09 Score=100.79 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=68.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcE--------eEEEeecCcHHHHHHHHHcCCCeEEE-EecCCCCC--------CCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILT--------MSFARRDTHEAQVQFALERGVPAMIG-VISSKRLP--------YPAR 285 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~--------v~i~gvDiS~~~i~~A~erg~~~~~~-v~d~~~Lp--------~pd~ 285 (629)
+.+|||+|||+|.++..|+++.... ..++++|+++.+ ....+.+. .+|....+ ++++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEVLPGR 96 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHhcCCC
Confidence 3489999999999999999873211 256778999732 11346677 66655432 3456
Q ss_pred CeeEEEecCccc---ccccCH-------HHHHHHHHhcccCCcEEEEEeC
Q 006834 286 AFDMAHCSGCLI---PWYMYD-------GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 286 sFDlV~~s~~L~---h~~~d~-------~~~L~el~RvLKPGG~liis~P 325 (629)
+||+|+|..+++ ++..+. ..++.++.++|||||.|++...
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 899999966442 221122 3789999999999999999853
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=110.15 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=75.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecCCC-CCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISSKR-LPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~~~-Lp~pd~sFDlV~~ 292 (629)
+.+|||||||+|.++..++++.. ...++++|+++.+++.|+++ ..++.+...|... ++..+++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 45899999999999999998742 23677889999999999875 2458888888654 3445689999998
Q ss_pred cCccccccc----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~ 324 (629)
.... ++.. ....+++++.++|+|||.+++..
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 5543 3221 12468999999999999999975
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.2e-09 Score=108.48 Aligned_cols=101 Identities=11% Similarity=0.090 Sum_probs=77.8
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCC-CCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRL-PYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~L-p~pd~sFDlV~~ 292 (629)
+.+|||+|||+|.++..+++... ...++++|+++.+++.|+++. .++.+.+.|.... +..+++||+|++
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 45899999999999999998742 336788899999999999762 3578888886543 223678999998
Q ss_pred cCcccccccC----HHHHHHHHHhcccCCcEEEEEeC
Q 006834 293 SGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 293 s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~P 325 (629)
.... ++... ...+++++.++|+|||.+++...
T Consensus 158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5433 33211 16899999999999999999853
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-09 Score=110.06 Aligned_cols=100 Identities=16% Similarity=0.087 Sum_probs=78.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----------CCeEEEEecCCC-CCCCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----------VPAMIGVISSKR-LPYPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----------~~~~~~v~d~~~-Lp~pd~sFDlV~ 291 (629)
+.+|||||||+|.++..++++.. ...++++|+++.+++.|+++. .++.+.++|... ++..+++||+|+
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 45899999999999999998732 236778899999999998642 358888888765 344568999999
Q ss_pred ecCccccc---cc--C--HHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPW---YM--Y--DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~---~~--d--~~~~L~el~RvLKPGG~liis~ 324 (629)
+.... ++ .. . ...+++++.++|||||.+++..
T Consensus 157 ~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 97655 44 11 1 3689999999999999999964
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-09 Score=111.17 Aligned_cols=116 Identities=9% Similarity=0.014 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~ 278 (629)
....+.+.+.+.. .+.+.+|||+|||+|.++..+++.+. .++++|+|+.+++.|+++ +. ++.+.+.|..
T Consensus 138 ~~~~~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~ 213 (332)
T 2igt_A 138 IVHWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM 213 (332)
T ss_dssp HHHHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred HHHHHHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHH
Confidence 3334445555431 12234899999999999999999876 456779999999999875 33 3788888876
Q ss_pred CCCC----CCCCeeEEEecCccc---------ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPY----PARAFDMAHCSGCLI---------PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~----pd~sFDlV~~s~~L~---------h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+.. ..++||+|++..... +...+...++.++.++|+|||+|++...
T Consensus 214 ~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 214 KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred HHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 5431 156899999954321 1222346789999999999999888653
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=113.01 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=78.3
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccCH
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYD 303 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~ 303 (629)
.+|||||||+|.++..++++... ..++++|+ +.+++.|++. .++.+..+|... +++ +||+|++..+++||. ++
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~-d~ 267 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPH-LKCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN-DE 267 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTT-SEEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSC-HH
T ss_pred CEEEEECCCcCHHHHHHHHHCCC-CeEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCC-HH
Confidence 48999999999999999998643 24567799 6888877653 348888888876 666 499999999998887 55
Q ss_pred H--HHHHHHHhcccC---CcEEEEEeC
Q 006834 304 G--LYLLEVDRVLRP---GGYWILSGP 325 (629)
Q Consensus 304 ~--~~L~el~RvLKP---GG~liis~P 325 (629)
. .+|+++.++||| ||++++..+
T Consensus 268 ~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 268 QSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp HHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 5 899999999999 999999753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-09 Score=107.47 Aligned_cols=97 Identities=9% Similarity=-0.029 Sum_probs=75.4
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-C-C-----CCCCeeEE
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-P-Y-----PARAFDMA 290 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p-~-----pd~sFDlV 290 (629)
.+|||||||+|..+..|++.......++++|+++.+++.|+++ +. ++.+..+|.... + + ++++||+|
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V 160 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI 160 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEE
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEE
Confidence 4899999999999999998743223567789999999999864 33 478888776543 3 2 25789999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++... ..+...++.++.++|||||++++..
T Consensus 161 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 161 FVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 98643 2356789999999999999999873
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-09 Score=110.49 Aligned_cols=100 Identities=14% Similarity=0.038 Sum_probs=74.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCC-CCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKR-LPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~-Lp~pd~sFDlV~~ 292 (629)
+.+|||||||+|.++..+++... ...++++|+++.+++.|+++. .++.+..+|... ++..+++||+|++
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 45899999999999999998742 336788899999999999763 347788877654 3335678999998
Q ss_pred cCcccccccCH----HHHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLIPWYMYD----GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~h~~~d~----~~~L~el~RvLKPGG~liis~ 324 (629)
... .++.... ..+++++.++|+|||.+++..
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 553 2433221 578999999999999999975
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=105.71 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=75.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCC-CCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKR-LPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~-Lp~pd~sFDlV~~ 292 (629)
+.+|||+|||+|.++..++++.. ...++++|+++.+++.|+++. .++.+..+|... ++..+++||+|++
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 45899999999999999998732 235678899999999998752 468888888654 3444678999998
Q ss_pred cCccccccc-----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLIPWYM-----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~h~~~-----d~~~~L~el~RvLKPGG~liis~ 324 (629)
...- ++.. ....++.++.++|+|||.+++..
T Consensus 170 d~~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCC-cccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5432 3111 12679999999999999999975
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-09 Score=104.71 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=69.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC---CCC---CCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL---PYP---ARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L---p~p---d~sFDlV 290 (629)
+.+|||+|||+|.++..++++.. ...++++|+++.+++.|+++ +. .+.+.++|.... +++ +++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 45899999999999999987631 12567779999999999865 33 388888886552 344 2689999
Q ss_pred EecCccccccc--------------CHHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYM--------------YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~--------------d~~~~L~el~RvLKPGG~liis 323 (629)
+|+..+++... ....++.++.|+|||||.+.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99876644320 0124567888999999987664
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.8e-09 Score=99.53 Aligned_cols=135 Identities=9% Similarity=0.086 Sum_probs=98.4
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCcccceeeccccccccCCCcC
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCD 560 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~ 560 (629)
+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++.- +..++.=.+.++.-+.+||+|.+.++|.... .-+
T Consensus 44 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~ 119 (203)
T 3h2b_A 44 VILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG-PGE 119 (203)
T ss_dssp CEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC-TTT
T ss_pred eEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC-HHH
Confidence 599999999999999998854 55666777788888888732 2333311122332238999999988776543 346
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCH----------------HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 561 ITNILLEMDRILRPEGTVIFRDTV----------------EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 561 ~~~~l~e~dRiLrPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
...+|.++-|+|||||.+++.+.. -....+++++....|++..+....+ .|...|...|+
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~~ 195 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEAS 195 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhhh
Confidence 789999999999999999998532 1267889999999999876665544 46666666553
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.9e-09 Score=109.54 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCC-CCCCCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKR-LPYPARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~-Lp~pd~sFDlV~~ 292 (629)
+.+|||+|||+|.++..++++.. ...++++|+++.+++.|+++. .++.+.++|... ++..+++||+|++
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 45899999999999999998732 236778899999999999762 357888887654 2334678999998
Q ss_pred cCccccccc--C--HHHHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLIPWYM--Y--DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~h~~~--d--~~~~L~el~RvLKPGG~liis~ 324 (629)
.... ++.. . ...+++++.++|||||.+++..
T Consensus 196 d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 6532 3221 1 1689999999999999999975
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-08 Score=104.08 Aligned_cols=129 Identities=17% Similarity=0.192 Sum_probs=82.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceeccccccCCCCCcccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||+|.++.+|++.+. .|+.+|.+..++..+.++ |+ +.+++.=+..+..-..+||+|-++-.|...
T Consensus 235 ~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~ 311 (381)
T 3dmg_A 235 RQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVG 311 (381)
T ss_dssp CEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTT
T ss_pred CEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhc
Confidence 3699999999999999998864 556666665677666543 32 333331111111112799999998887643
Q ss_pred CC--CcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 556 QD--RCDITNILLEMDRILRPEGTVIFRDTV--EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 556 ~~--~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
.. .-....++.++-|+|||||.++|..+. .....+++.... +... .+ ..-+||-+.|
T Consensus 312 ~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~----v~~l-~~----~gF~Vl~a~~ 372 (381)
T 3dmg_A 312 GAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGA----FQTL-KV----AEYKVLFAEK 372 (381)
T ss_dssp CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSC----CEEE-EE----SSSEEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhcc----EEEE-eC----CCEEEEEEEE
Confidence 22 234567999999999999999997543 234455555443 3333 11 2456666654
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-08 Score=105.14 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=85.4
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLPYP 283 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp~p 283 (629)
...+.+.+.... ..+|||||||+|.++..++++.+.. .++..|. +.+++.|+++. .++.+..+|....|.+
T Consensus 168 ~~~~~~~~~~~~--~~~v~DvGgG~G~~~~~l~~~~p~~-~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~ 243 (353)
T 4a6d_A 168 GRSVLTAFDLSV--FPLMCDLGGGAGALAKECMSLYPGC-KITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP 243 (353)
T ss_dssp HHHHHHSSCGGG--CSEEEEETCTTSHHHHHHHHHCSSC-EEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC
T ss_pred HHHHHHhcCccc--CCeEEeeCCCCCHHHHHHHHhCCCc-eeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC
Confidence 344444444433 3489999999999999999987653 4456687 78899988752 4588998888765554
Q ss_pred CCCeeEEEecCcccccccCH-HHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMYD-GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~-~~~L~el~RvLKPGG~liis~P 325 (629)
.+|+|++..+||+|.++. ..+|+++++.|+|||.++|...
T Consensus 244 --~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 244 --EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp --CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 479999999999998432 4689999999999999999764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-08 Score=105.64 Aligned_cols=98 Identities=13% Similarity=-0.030 Sum_probs=78.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC-CCC-CCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR-LPY-PARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~-Lp~-pd~sFDlV~~s~~ 295 (629)
+.+|||+| |+|.++..++..+.. ..++++|+++.+++.|+++ +. ++.+.++|... +|. .+++||+|+++..
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 45999999 999999999988652 2567779999999999875 44 68899999887 664 4578999999876
Q ss_pred ccccccCHHHHHHHHHhcccCCc-EEEEEe
Q 006834 296 LIPWYMYDGLYLLEVDRVLRPGG-YWILSG 324 (629)
Q Consensus 296 L~h~~~d~~~~L~el~RvLKPGG-~liis~ 324 (629)
+.+.. ...++.++.++||||| .++++.
T Consensus 251 ~~~~~--~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 251 ETLEA--IRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp SSHHH--HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CchHH--HHHHHHHHHHHcccCCeEEEEEE
Confidence 64332 4789999999999999 445553
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.82 E-value=7.7e-09 Score=105.64 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=73.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecCCCCCCCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISSKRLPYPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~~~Lp~pd~sFDlV~~s 293 (629)
+++|||||||+|.++..+++++ ..++++|+++.+++.|+++. .++.+..+|..... ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 4589999999999999999883 36788899999999998642 35778877876654 789999986
Q ss_pred CcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 294 ~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
. .++..++.++.++|+|||.+++..
T Consensus 147 ~------~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 Q------EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp S------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred C------CChHHHHHHHHHhcCCCcEEEEEc
Confidence 2 245569999999999999999964
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-08 Score=109.93 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=83.4
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC--CC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP--YP 283 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp--~p 283 (629)
.+...+...++. +|||+|||+|..+..|++.......++++|+++.+++.++++ +. ++.+.+.|...++ ++
T Consensus 250 l~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~ 327 (450)
T 2yxl_A 250 VASIVLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIG 327 (450)
T ss_dssp HHHHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSC
T ss_pred HHHHhcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhc
Confidence 334445554444 899999999999999998643223567789999999998865 44 6888888887776 55
Q ss_pred CCCeeEEEe------cCcccccccCH----------------HHHHHHHHhcccCCcEEEEEeCCC
Q 006834 284 ARAFDMAHC------SGCLIPWYMYD----------------GLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 284 d~sFDlV~~------s~~L~h~~~d~----------------~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+++||+|++ ..++.+ .++. ..+|.++.++|||||.+++++...
T Consensus 328 ~~~fD~Vl~D~Pcsg~g~~~~-~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 328 EEVADKVLLDAPCTSSGTIGK-NPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp SSCEEEEEEECCCCCGGGTTT-STTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCEEEEcCCCCCCeeecc-ChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 578999996 222221 1121 468999999999999999987543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.2e-09 Score=103.71 Aligned_cols=153 Identities=10% Similarity=0.060 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHhhcc-cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceec-cccccC
Q 006834 460 LWKDRMTYYKKIDGL-FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQ-DWCEAF 536 (629)
Q Consensus 460 ~w~~~v~~y~~~~~~-~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~-~~~e~f 536 (629)
.|........+++.. +..+ .+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++.- +..++ |. +.+
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~ 105 (263)
T 3pfg_A 32 DYHREAADLAALVRRHSPKA--ASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDM-RDF 105 (263)
T ss_dssp CHHHHHHHHHHHHHHHCTTC--CEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCT-TTC
T ss_pred CHHHHHHHHHHHHHhhCCCC--CcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-HHC
Confidence 444444444444332 2222 4699999999999999998864 56667777688888888732 23332 22 222
Q ss_pred CCCCcccceeeccc-cccccCCCcCHHHHHHHHhhcccCCcEEEEEeC--------------------------------
Q 006834 537 STYPRTYDLIHASG-VFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-------------------------------- 583 (629)
Q Consensus 537 ~~yp~t~Dl~H~~~-~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-------------------------------- 583 (629)
+. +.+||+|.+.. +|....+.-+...+|.++.|+|||||.++|.+.
T Consensus 106 ~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (263)
T 3pfg_A 106 SL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSRE 184 (263)
T ss_dssp CC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred Cc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEec
Confidence 22 68999999986 777655445667899999999999999999520
Q ss_pred -----------------------------HHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 584 -----------------------------VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 584 -----------------------------~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
.-....++++++.--+++.-+... .....++|++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~---~~~~~~~va~K~ 249 (263)
T 3pfg_A 185 GEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGG---PSGRGLFTGLPG 249 (263)
T ss_dssp TTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST---TTSSCEEEEEEC
T ss_pred CcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC---CCCceeEEEecC
Confidence 002578899999888887655332 235678999996
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.8e-09 Score=107.29 Aligned_cols=98 Identities=13% Similarity=0.079 Sum_probs=75.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------------CCeEEEEecCCCC-CCCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------------VPAMIGVISSKRL-PYPARA 286 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------------~~~~~~v~d~~~L-p~pd~s 286 (629)
+.+|||||||+|.++..+++++ ...++++|+++.+++.|+++. .++.+...|.... +. +++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~--~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHD--VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSC--CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 4589999999999999999883 236788899999999998753 3477777776432 22 578
Q ss_pred eeEEEecCccccccc--C--HHHHHHHHHhcccCCcEEEEEe
Q 006834 287 FDMAHCSGCLIPWYM--Y--DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 287 FDlV~~s~~L~h~~~--d--~~~~L~el~RvLKPGG~liis~ 324 (629)
||+|++.... ++.. . ...+++++.++|+|||.+++..
T Consensus 153 fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999986543 3321 1 2678999999999999999974
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-08 Score=93.98 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=74.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++. .++.+..+|...++ ++||+|+++..+++
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 448999999999999999998653 4677899999999999763 36888888887764 48999999988755
Q ss_pred ccc-CHHHHHHHHHhcccCCcEEEEE
Q 006834 299 WYM-YDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 299 ~~~-d~~~~L~el~RvLKPGG~liis 323 (629)
... ....++.++.++| ||.+++.
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEE
Confidence 542 2457899999998 6654443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=7.7e-08 Score=99.17 Aligned_cols=125 Identities=9% Similarity=0.056 Sum_probs=94.7
Q ss_pred ecCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 187 VEGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 187 ~~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
.+|-.+.|.-..++|..+...-...+.+++.. +.+|||+|||+|.++..++.++.. .++++|+++.+++.++++
T Consensus 94 E~G~~~~~D~~k~~f~~~~~~er~ri~~~~~~----g~~VlD~~aG~G~~~i~~a~~g~~--~V~avD~np~a~~~~~~N 167 (278)
T 3k6r_A 94 ENGIKYKLDVAKIMFSPANVKERVRMAKVAKP----DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVEN 167 (278)
T ss_dssp ETTEEEEEETTTSCCCGGGHHHHHHHHHHCCT----TCEEEETTCTTTTTTHHHHHHTCC--EEEEECCCHHHHHHHHHH
T ss_pred ECCEEEEEeccceEEcCCcHHHHHHHHHhcCC----CCEEEEecCcCcHHHHHHHHhcCC--eEEEEECCHHHHHHHHHH
Confidence 45556666666678877777667777777643 349999999999999999998743 456779999999999864
Q ss_pred ----CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 267 ----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 267 ----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+. .+.+..+|...++ +.+.||.|++.... ....+|..+.++|||||.+.+.
T Consensus 168 ~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p~-----~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 168 IHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYVV-----RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp HHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEE
T ss_pred HHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCCC-----cHHHHHHHHHHHcCCCCEEEEE
Confidence 33 4778888887765 35789999975422 3456888899999999998764
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.78 E-value=9e-09 Score=102.95 Aligned_cols=98 Identities=9% Similarity=-0.016 Sum_probs=75.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-C-C-----CCCCeeE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-P-Y-----PARAFDM 289 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p-~-----pd~sFDl 289 (629)
.++|||||||+|..+..|++.......++++|+++.+++.|+++ +. .+.+.++|.... + + ++++||+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 34899999999999999998733223667789999999999864 43 478888776542 2 2 2578999
Q ss_pred EEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 290 AHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 290 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
|++... ..+...++.++.++|||||++++..
T Consensus 151 I~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 151 GFVDAD----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCc----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 997542 2345679999999999999998863
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=104.11 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=73.1
Q ss_pred eEEEeecccchhHHhhhhC-CCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCCcccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||.|+++.+|++ .+. +|+.+|.++.++..+.++ |+..-+.-.+..+..+|.+||+|.+.++|...
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~~ 142 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHF 142 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhhc
Confidence 4699999999999999984 454 566666666788887776 54222222224445567999999998888755
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.. -+...+|.|+.|+|||||.+++.+
T Consensus 143 ~~-~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 143 GH-ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp CT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred Ch-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 32 357889999999999999999975
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.2e-08 Score=97.22 Aligned_cols=130 Identities=14% Similarity=0.046 Sum_probs=94.2
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLP 281 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp 281 (629)
-++.+.++++. +.+|||||||+|.++..|++.+.. ..++++|+++.+++.|+++ +. .+.+..+|.....
T Consensus 11 RL~~i~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 11 RLQKVANYVPK----GARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHHHHHTTSCT----TEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCCC----CCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence 35566666643 348999999999999999998753 3567889999999999865 33 4888888877765
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhccee
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKK 361 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 361 (629)
.+++.||+|+.....-. -...+|.+..+.|+++|+|+++.. . ....+++.....+|..
T Consensus 86 ~~~~~~D~IviaGmGg~---lI~~IL~~~~~~l~~~~~lIlqp~-~------------------~~~~lr~~L~~~Gf~i 143 (230)
T 3lec_A 86 EEADNIDTITICGMGGR---LIADILNNDIDKLQHVKTLVLQPN-N------------------REDDLRKWLAANDFEI 143 (230)
T ss_dssp CGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEES-S------------------CHHHHHHHHHHTTEEE
T ss_pred ccccccCEEEEeCCchH---HHHHHHHHHHHHhCcCCEEEEECC-C------------------ChHHHHHHHHHCCCEE
Confidence 55557999886543311 135688889999999999999842 0 1234666667777765
Q ss_pred ecc
Q 006834 362 LIE 364 (629)
Q Consensus 362 v~~ 364 (629)
+.+
T Consensus 144 ~~E 146 (230)
T 3lec_A 144 VAE 146 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=103.52 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=79.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~ 279 (629)
...++.|.+.+...++. +|||+|||+|.++..|++.+. .++++|+++.+++.++++. .++.+..+|...
T Consensus 14 ~~i~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~ 88 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence 55677777777665444 899999999999999999876 4566799999999998762 358889999888
Q ss_pred CCCCCCCeeEEEecCcccccccCH-HHHH--------------HHH--HhcccCCcEE
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYD-GLYL--------------LEV--DRVLRPGGYW 320 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~-~~~L--------------~el--~RvLKPGG~l 320 (629)
++++ +||+|+++..+ ++.... ..++ +|+ +++|+|||.+
T Consensus 89 ~~~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 89 TDLP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp SCCC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred ccch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 7765 79999997655 443221 1122 233 3688999876
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=95.14 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=92.0
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCC-cccceeeccccccccCC
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQD 557 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~ 557 (629)
-.+|||+|||.|.++.+|++.. . +|..+|.++..++.+.++.- +..++ .. ..+| .+||+|.+..++....
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~v~~~~---~d-~~~~~~~~D~v~~~~~l~~~~- 89 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEKFDSVITLS---DP-KEIPDNSVDFILFANSFHDMD- 89 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHHCTTSEEES---SG-GGSCTTCEEEEEEESCSTTCS-
T ss_pred CCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHhCCCcEEEe---CC-CCCCCCceEEEEEccchhccc-
Confidence 3579999999999999999985 2 77888887788888888711 22222 22 4455 7999999988877553
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCHH-------------HHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRDTVE-------------MLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d~~~-------------~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
+...+|.|+-|+|||||.+++.+... ....++++++ .|+......- + ...-.|++.|+
T Consensus 90 --~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~-~--~~~~~l~~~~~ 160 (170)
T 3i9f_A 90 --DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP-T--PYHFGLVLKRK 160 (170)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS-S--TTEEEEEEEEC
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC-C--CceEEEEEecC
Confidence 56899999999999999999985321 1456777776 6655432221 1 25677887775
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.7e-09 Score=100.69 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=92.3
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc--cceeccccccCCCCC--cccceeecccccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL--IGTYQDWCEAFSTYP--RTYDLIHASGVFSIY 555 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl--i~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~~ 555 (629)
-.+|||+|||.|.++.+|++.+. +++.+|.++.++..+.++-- +..++ ..+..+| .+||+|.+.++|...
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITE---GDFLSFEVPTSIDTIVSTYAFHHL 119 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEES---CCSSSCCCCSCCSEEEEESCGGGS
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEe---CChhhcCCCCCeEEEEECcchhcC
Confidence 34699999999999999998864 56667777678888887732 33333 2233333 899999998887654
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH----H---------------------------HHHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTV----E---------------------------MLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~---------------------------~~~~~~~~~~~l~w~~~~~ 604 (629)
.+. ....+|.|+-|+|||||.+++.+.. . ....++++++.-.+++...
T Consensus 120 ~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 198 (220)
T 3hnr_A 120 TDD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 (220)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred ChH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence 332 1233999999999999999998631 0 1256778888888876655
Q ss_pred ecCCCCCCCceEEEEEec
Q 006834 605 DHESGPFNPEKILFAAKT 622 (629)
Q Consensus 605 ~~e~~~~~~e~~l~~~K~ 622 (629)
... .-.-++.++|+
T Consensus 199 ~~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 199 RLN----HFVWVMEATKQ 212 (220)
T ss_dssp ECS----SSEEEEEEEEC
T ss_pred ecc----ceEEEEeehhh
Confidence 443 23456666664
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=97.21 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=82.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++..|++.+. +++.+|.++.++..+.++ |+ +...+ |.. .++. +.+||+|.+.++|.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN-NLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG-GCCC-CCCEEEEEEESCGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh-hCCC-CCCceEEEEcchhh
Confidence 3799999999999999998864 556666665677766553 43 33333 322 2333 78999999988776
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------HHHHHHHHHHhcCCCeEEEee
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDTV--------------EMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------~~~~~~~~~~~~l~w~~~~~~ 605 (629)
... .-+...+|.++.|+|||||.+++.+.. -....++++++. |++..+.
T Consensus 109 ~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 109 FLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 543 335788999999999999998875421 024567788777 8876543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.6e-08 Score=93.13 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=97.2
Q ss_pred hhchhhHHHHHHHHHHHHH------------hhcccC-CCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchH
Q 006834 452 EKLREDNELWKDRMTYYKK------------IDGLFH-KGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLG 518 (629)
Q Consensus 452 ~~f~~d~~~w~~~v~~y~~------------~~~~~~-~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~ 518 (629)
+.|..+...|......|.. ++..+. ...-.+|||+|||.|.++..|. ..|+.+-+.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------- 97 (215)
T 2zfu_A 27 RLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR-NPVHCFDLASL-------- 97 (215)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS--------
T ss_pred HHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC--------
Confidence 4466666677665555543 221111 1223469999999999999985 45555544443
Q ss_pred HHHhhcccceeccccccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHH
Q 006834 519 AIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE---MLVKIRSIT 594 (629)
Q Consensus 519 ~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~ 594 (629)
. +.+.+.-.+.++ +| .+||+|.+..++. . -+...+|.|+.|+|||||.+++.+... ....+..++
T Consensus 98 -----~-~~~~~~d~~~~~-~~~~~fD~v~~~~~l~---~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l 166 (215)
T 2zfu_A 98 -----D-PRVTVCDMAQVP-LEDESVDVAVFCLSLM---G-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAV 166 (215)
T ss_dssp -----S-TTEEESCTTSCS-CCTTCEEEEEEESCCC---S-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHH
T ss_pred -----C-ceEEEeccccCC-CCCCCEeEEEEehhcc---c-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 1 122221112222 44 7899999987773 1 467899999999999999999987654 457788888
Q ss_pred hcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 595 EGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 595 ~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
+...++....+...+ .-.+++++|.
T Consensus 167 ~~~Gf~~~~~~~~~~---~~~~~~~~k~ 191 (215)
T 2zfu_A 167 TKLGFKIVSKDLTNS---HFFLFDFQKT 191 (215)
T ss_dssp HHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred HHCCCEEEEEecCCC---eEEEEEEEec
Confidence 888888765544322 3478888885
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.9e-08 Score=98.20 Aligned_cols=108 Identities=15% Similarity=0.037 Sum_probs=82.1
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~ 282 (629)
++.+.++++. +.+|||||||+|.++..|++.+.. ..++++|+++.+++.|+++ +. .+.+..+|......
T Consensus 12 L~~i~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~ 86 (244)
T 3gnl_A 12 LEKVASYITK----NERIADIGSDHAYLPCFAVKNQTA-SFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE 86 (244)
T ss_dssp HHHHHTTCCS----SEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCCC----CCEEEEECCccHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC
Confidence 5566666653 348999999999999999998753 3567889999999999975 43 47888888776554
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++..||+|+.....-. -...+|.+..+.|+++|+|+++.
T Consensus 87 ~~~~~D~IviagmGg~---lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 87 KKDAIDTIVIAGMGGT---LIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp GGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccccccEEEEeCCchH---HHHHHHHHHHHHhCCCCEEEEEc
Confidence 4446999886543311 13568889999999999999984
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-08 Score=96.31 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=90.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC-cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP-RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp-~t~Dl~H 547 (629)
+.++. .|||+|||+|.++..|++.+ -+|+.+|.++.++..+.++ |+ +.+.++-.+.+..++ .+||+|.
T Consensus 20 ~~~~~--~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~ 94 (185)
T 3mti_A 20 LDDES--IVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAI 94 (185)
T ss_dssp CCTTC--EEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred CCCCC--EEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEE
Confidence 45554 59999999999999999884 3566667776788777654 54 445544444544454 8899996
Q ss_pred cc-cccccc-----CCCcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCC---CeEEEeecCCCCCC
Q 006834 548 AS-GVFSIY-----QDRCDITNILLEMDRILRPEGTVIFRDT------VEMLVKIRSITEGMR---WKSQIMDHESGPFN 612 (629)
Q Consensus 548 ~~-~~fs~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~l~---w~~~~~~~e~~~~~ 612 (629)
++ +.+... ...-.....|.|+-|+|||||.+++..- .+....+.+.+..+. |.+..+..-+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 174 (185)
T 3mti_A 95 FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINT 174 (185)
T ss_dssp EEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSC
T ss_pred EeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCC
Confidence 64 222210 0112234688999999999999999643 223455666666555 77665544444334
Q ss_pred CceEEEEEe
Q 006834 613 PEKILFAAK 621 (629)
Q Consensus 613 ~e~~l~~~K 621 (629)
+..+++..|
T Consensus 175 ~~~~~~i~~ 183 (185)
T 3mti_A 175 PPFLVMLEK 183 (185)
T ss_dssp CCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 556666665
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-08 Score=97.28 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-----------ccce
Q 006834 460 LWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-----------LIGT 528 (629)
Q Consensus 460 ~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-----------li~~ 528 (629)
....+.....+.+.. ..-.+|||+|||.|.++.+|++..- ..+|+.+|.++.++..+.++- -+..
T Consensus 13 ~~~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~ 88 (219)
T 3jwg_A 13 LNQQRLGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88 (219)
T ss_dssp HHHHHHHHHHHHHHH---TTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEE
T ss_pred chHHHHHHHHHHHhh---cCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEE
Confidence 334444444444331 2234799999999999999988631 135566666667888887761 1233
Q ss_pred eccccccCCCCC---cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH-------------------
Q 006834 529 YQDWCEAFSTYP---RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEM------------------- 586 (629)
Q Consensus 529 ~~~~~e~f~~yp---~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~------------------- 586 (629)
++ ..+...| .+||+|.+..++.... .-++..+|.++.|+|||||.++++.....
T Consensus 89 ~~---~d~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (219)
T 3jwg_A 89 FQ---SSLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRF 164 (219)
T ss_dssp EE---CCSSSCCGGGTTCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTT
T ss_pred Ee---CcccccccccCCCCEEEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCcee
Confidence 33 2233333 7999999988887552 22346899999999999998887643321
Q ss_pred ---HHHHH----HHHhcCCCeEEEee---cCCCCCCCceEEEEEec
Q 006834 587 ---LVKIR----SITEGMRWKSQIMD---HESGPFNPEKILFAAKT 622 (629)
Q Consensus 587 ---~~~~~----~~~~~l~w~~~~~~---~e~~~~~~e~~l~~~K~ 622 (629)
...++ .++.+-.+++.... ....-..+.+|.|++|.
T Consensus 165 ~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 165 EWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp SBCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred eecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEecc
Confidence 22333 77777788877653 22222247899999995
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-08 Score=108.49 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=85.1
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC--C
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP--Y 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp--~ 282 (629)
...+..++...++. +|||+|||+|..+..+++.... ..++++|+++.+++.++++ +.++.+...|...++ +
T Consensus 235 s~~~~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~ 311 (429)
T 1sqg_A 235 AQGCMTWLAPQNGE--HILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC 311 (429)
T ss_dssp HHTHHHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHH
T ss_pred HHHHHHHcCCCCcC--eEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhc
Confidence 33444555554444 8999999999999999997643 3577889999999988865 566788888887776 5
Q ss_pred CCCCeeEEEec------CcccccccCH----------------HHHHHHHHhcccCCcEEEEEeCCC
Q 006834 283 PARAFDMAHCS------GCLIPWYMYD----------------GLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 283 pd~sFDlV~~s------~~L~h~~~d~----------------~~~L~el~RvLKPGG~liis~P~~ 327 (629)
++++||+|++. .++.+-+ +. ..+|.++.++|||||++++++...
T Consensus 312 ~~~~fD~Vl~D~Pcsg~g~~~~~p-~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 312 GEQQFDRILLDAPCSATGVIRRHP-DIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp TTCCEEEEEEECCCCCGGGTTTCT-THHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred ccCCCCEEEEeCCCCcccccCCCc-chhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 66899999962 1221211 21 368999999999999999987533
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-08 Score=96.81 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=71.3
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeeccc-ccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASG-VFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~-~fs 553 (629)
.+|||+|||.|.++..|++.+. +++.+|.++.++..+.++ |+ +..++ |.. .+ .++.+||+|.+.+ +|.
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~-~~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NL-NINRKFDLITCCLDSTN 113 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GC-CCSCCEEEEEECTTGGG
T ss_pred CeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cC-CccCCceEEEEcCcccc
Confidence 4699999999999999998864 566667776788877766 22 23332 221 22 2448999999987 877
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
...+.-+...+|.++.|+|||||.+++.
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 6544446788999999999999999984
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-08 Score=104.99 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=81.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCc----EeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDIL----TMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~----~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~ 294 (629)
..+|||+|||+|.++..+++.... ...++|+|+++.+++.|+.+ +.++.+..+|.... .+.++||+|+++.
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISDL 209 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEEC
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-cccCCccEEEECC
Confidence 458999999999999998876421 25688999999999999864 56778888887553 3467899999998
Q ss_pred cccccccCH-----------------HHHHHHHHhcccCCcEEEEEeCCC
Q 006834 295 CLIPWYMYD-----------------GLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 295 ~L~h~~~d~-----------------~~~L~el~RvLKPGG~liis~P~~ 327 (629)
.+.++..+. ..++..+.+.|+|||++++..|..
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 765443111 157999999999999999998754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-09 Score=103.03 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=74.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec-cccccCCCCC-cccceeeccccccccCCC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAFSTYP-RTYDLIHASGVFSIYQDR 558 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~ 558 (629)
.+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ +..+. |..+-..++| .+||+|.+.+++.... .
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~-~ 116 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD-P 116 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC-G
T ss_pred CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC-c
Confidence 3699999999999999988765 456667777888888888 44443 2222222556 8999999988887554 2
Q ss_pred cCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 559 CDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 559 c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
-++..+|.++.|+|||||++++...
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESP 141 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3568899999999999999999753
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.73 E-value=6e-09 Score=103.59 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=89.8
Q ss_pred hhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceec-cccccCCCCC-cccc
Q 006834 471 IDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQ-DWCEAFSTYP-RTYD 544 (629)
Q Consensus 471 ~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~-~~~e~f~~yp-~t~D 544 (629)
++..+....-.+|||+|||.|.++.+|++.. ..+|..+|.++.++..+.++- -+...+ |+ +.++ +| .+||
T Consensus 85 ~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD 160 (254)
T 1xtp_A 85 FIASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASM-ETAT-LPPNTYD 160 (254)
T ss_dssp HHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG-GGCC-CCSSCEE
T ss_pred HHHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccH-HHCC-CCCCCeE
Confidence 3333433344579999999999999998764 224555666667888888773 233333 32 2232 44 7999
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------------HHHHHHHHHhcCCCeEEEee
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE----------------MLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------------~~~~~~~~~~~l~w~~~~~~ 605 (629)
+|.+..++..... -+...+|.++.|+|||||.++|.+... ....++++++...++.....
T Consensus 161 ~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 161 LIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp EEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 9999887765432 246789999999999999999987410 24677888887788765443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-08 Score=97.29 Aligned_cols=109 Identities=12% Similarity=-0.005 Sum_probs=73.2
Q ss_pred hHHHHHHHHhhcCc-cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCC
Q 006834 205 ADAYIDNINELIPL-TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYP 283 (629)
Q Consensus 205 a~~~i~~I~~lL~~-~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~p 283 (629)
+...+..|.+.... .+ +.+|||+|||+|.++..+++++. .++++|+++.. ...++.+.++|....+..
T Consensus 9 a~~KL~ei~~~~~~~~~--g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 9 AAFKLEFLLDRYRVVRK--GDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME------EIAGVRFIRCDIFKETIF 77 (191)
T ss_dssp HHHHHHHHHHHHCCSCT--TCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC------CCTTCEEEECCTTSSSHH
T ss_pred HHHHHHHHHHHcCCCCC--CCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc------cCCCeEEEEccccCHHHH
Confidence 33334444444332 33 34999999999999999999844 45666998642 224688889988765421
Q ss_pred -----------CCCeeEEEecCccc---ccccC-------HHHHHHHHHhcccCCcEEEEEe
Q 006834 284 -----------ARAFDMAHCSGCLI---PWYMY-------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 284 -----------d~sFDlV~~s~~L~---h~~~d-------~~~~L~el~RvLKPGG~liis~ 324 (629)
.++||+|+|..... ++..+ ...++.++.++|||||.|++..
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 14899999965321 11101 1357889999999999999874
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.9e-09 Score=107.46 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=65.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecC----cHHHHHHHHHc--C-CCeEEEEe-cCCCCCCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDT----HEAQVQFALER--G-VPAMIGVI-SSKRLPYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDi----S~~~i~~A~er--g-~~~~~~v~-d~~~Lp~pd~sFDlV~~s~ 294 (629)
+.+|||+|||+|.++..+++++ . ++++|+ ++.+++.+..+ + ..+.+.+. |...++ .++||+|+|..
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~-~---V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~ 156 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLK-N---VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDI 156 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTST-T---EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CCEEEEEcCCCCHHHHHHHhcC-C---EEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECC
Confidence 3499999999999999999983 3 345587 44433222111 1 24677776 666554 56899999976
Q ss_pred ccc--ccccCHH---HHHHHHHhcccCCcEEEEEe
Q 006834 295 CLI--PWYMYDG---LYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~--h~~~d~~---~~L~el~RvLKPGG~liis~ 324 (629)
.++ ++..+.. .+|.++.++|||||.|++..
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 542 2221222 47899999999999999865
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=104.34 Aligned_cols=100 Identities=11% Similarity=0.153 Sum_probs=73.9
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCCcccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||.|+++..|++. +. +|+.+|.++.++..+.++ |+-+-++-.+..+..++.+||+|.+.++|...
T Consensus 74 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~~~ 150 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHF 150 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHHhc
Confidence 46999999999999999887 63 566667766788877766 54221221223333348999999999888765
Q ss_pred CCC------cCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 556 QDR------CDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 556 ~~~------c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.+. -+...+|.++.|+|||||.+++.+.
T Consensus 151 ~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 151 ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp TCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 332 4567899999999999999999753
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-08 Score=110.59 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=80.9
Q ss_pred HhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC-CCCCCe
Q 006834 213 NELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP-YPARAF 287 (629)
Q Consensus 213 ~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp-~pd~sF 287 (629)
...+...++. +|||+|||+|..+..|++.......++++|+++.+++.++++ +..+.+...|...++ +.+++|
T Consensus 94 a~~L~~~~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 94 GVLLDPKPGE--RVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp HHHHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCE
T ss_pred HHhcCcCCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccC
Confidence 3444444444 999999999999999998743323567789999999999865 555777777776665 346799
Q ss_pred eEEEecC------ccc-------ccccC--------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 288 DMAHCSG------CLI-------PWYMY--------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 288 DlV~~s~------~L~-------h~~~d--------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
|+|++.. ++. ++..+ ...+|.++.++|||||+|++++...
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 9999511 111 11111 1568999999999999999987543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.71 E-value=4e-08 Score=94.77 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=71.2
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCC-cccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
+|||+|||.|.++..|++.+- .+|+.+|.++.++..+.++ |+ +..++.=.+.++ +| .+||+|.+.+++.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSRGSVF 122 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-SCTTCEEEEEEESCGG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-CCcccccEEEECchHh
Confidence 799999999999999988732 4566667666788877777 44 333331112222 44 8999999988877
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.. -+...+|.++-|+|||||.+++.+
T Consensus 123 ~~---~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 123 FW---EDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hc---cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 65 356889999999999999999975
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=5.1e-08 Score=99.35 Aligned_cols=128 Identities=16% Similarity=0.082 Sum_probs=90.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|||+|||.|-++..++..... ..++++|+++.++++++++ +.+..+.+.|...-+ +.+.||+|++.-++++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred CceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence 569999999999999988876443 3678889999999999875 677788877765544 5678999999999988
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcc
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCW 359 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w 359 (629)
+..+....+.++...|+|+|.++-. |--. -. .+++.........++..+...+|
T Consensus 211 Le~q~kg~g~~ll~aL~~~~vvVSf-p~ks----l~--Grs~gm~~~Y~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 211 LETQQRGSGWEVIDIVNSPNIVVTF-PTKS----LG--QRSKGMFQNYSQSFESQARERSC 264 (281)
T ss_dssp HHHHSTTHHHHHHHHSSCSEEEEEE-ECC-------------CHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEec-cchh----hc--CCCcchhhHHHHHHHHHHHhcCC
Confidence 7644333444999999999988654 2100 00 13334444455667777776667
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.7e-08 Score=95.50 Aligned_cols=128 Identities=14% Similarity=0.083 Sum_probs=90.2
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPY 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~ 282 (629)
++.+.++++. +.+|||||||+|.++..+++.+.. ..++++|+++.+++.|+++ +. .+.+..+|... ++
T Consensus 6 L~~l~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~-~l 79 (225)
T 3kr9_A 6 LELVASFVSQ----GAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLA-AF 79 (225)
T ss_dssp HHHHHTTSCT----TEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG-GC
T ss_pred HHHHHHhCCC----CCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhh-hc
Confidence 4456666543 348999999999999999998753 3577889999999999865 43 47888887632 23
Q ss_pred CCC-CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhccee
Q 006834 283 PAR-AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKK 361 (629)
Q Consensus 283 pd~-sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 361 (629)
+.+ .||+|+....--. -...++.+..+.|+|+|+|++... . ....+.......+|..
T Consensus 80 ~~~~~~D~IviaG~Gg~---~i~~Il~~~~~~L~~~~~lVlq~~-~------------------~~~~vr~~L~~~Gf~i 137 (225)
T 3kr9_A 80 EETDQVSVITIAGMGGR---LIARILEEGLGKLANVERLILQPN-N------------------REDDLRIWLQDHGFQI 137 (225)
T ss_dssp CGGGCCCEEEEEEECHH---HHHHHHHHTGGGCTTCCEEEEEES-S------------------CHHHHHHHHHHTTEEE
T ss_pred ccCcCCCEEEEcCCChH---HHHHHHHHHHHHhCCCCEEEEECC-C------------------CHHHHHHHHHHCCCEE
Confidence 333 6999886543211 135688999999999999999732 1 1234666667778866
Q ss_pred ecc
Q 006834 362 LIE 364 (629)
Q Consensus 362 v~~ 364 (629)
+.+
T Consensus 138 ~~e 140 (225)
T 3kr9_A 138 VAE 140 (225)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-08 Score=103.05 Aligned_cols=103 Identities=10% Similarity=0.199 Sum_probs=75.2
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCC-cccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYP-RTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp-~t~Dl 545 (629)
+.++. +|||+|||+|.++.+|++. ++ +|+.+|.++.+++.+.++ |+..-+.-.|..+..+| ..||+
T Consensus 68 ~~~~~--~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~ 142 (261)
T 4gek_A 68 VQPGT--QVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASM 142 (261)
T ss_dssp CCTTC--EEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEE
T ss_pred CCCCC--EEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccccccc
Confidence 45665 4999999999999888754 33 566778877899988776 54332333346667777 77999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+-+..++.... .-+...+|.|+.|+|||||.+|+.|.
T Consensus 143 v~~~~~l~~~~-~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 143 VVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp EEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeeeeeecC-chhHhHHHHHHHHHcCCCcEEEEEec
Confidence 98866654332 22346799999999999999999864
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=105.33 Aligned_cols=103 Identities=11% Similarity=-0.041 Sum_probs=78.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCCCC----CCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRLPY----PARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~Lp~----pd~sFDlV~ 291 (629)
+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ +. ++.+..+|...+.. ..++||+|+
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~--~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 348999999999999999998642 467779999999999865 44 58888888765421 146899999
Q ss_pred ecCccc--------ccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 292 CSGCLI--------PWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 292 ~s~~L~--------h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+..... ........++.++.++|+|||+++++..+.
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 964321 111234678999999999999999986443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=99.23 Aligned_cols=95 Identities=17% Similarity=0.277 Sum_probs=71.8
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc--cceeccccccCCCCCcccceeeccccccccCCCc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL--IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl--i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c 559 (629)
+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++-- +..++.-.+.+ ..+.+||+|++.+++....
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~--- 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID--- 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS---
T ss_pred cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc---
Confidence 499999999999999998754 55666777678888887742 23333222223 2348999999988887554
Q ss_pred CHHHHHHHHh-hcccCCcEEEEEeC
Q 006834 560 DITNILLEMD-RILRPEGTVIFRDT 583 (629)
Q Consensus 560 ~~~~~l~e~d-RiLrPgG~~i~~d~ 583 (629)
+.+.+|.|+. |+|||||++++.+.
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 4589999999 99999999999863
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.9e-09 Score=105.66 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=70.3
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeeccccccccCCCc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c 559 (629)
.+|||+|||+|.++..|+++.- +|+.+|.++.++..+.++.-|...+.=.|.++ +| .+||+|.|..+|. -.
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-~~~~sfD~v~~~~~~h----~~ 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-LPPASVDVAIAAQAMH----WF 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCC-CCSSCEEEEEECSCCT----TC
T ss_pred CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhc-ccCCcccEEEEeeehh----Hh
Confidence 3699999999999999998864 56666777678777665544454443334443 44 8999999977773 23
Q ss_pred CHHHHHHHHhhcccCCcEEEEE
Q 006834 560 DITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+.+..+.|+.|||||||.|++-
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEE
Confidence 6788999999999999999874
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-08 Score=107.30 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=77.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCC-CCCCeeEEEec---
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPY-PARAFDMAHCS--- 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~-pd~sFDlV~~s--- 293 (629)
+.+|||+|||+|..+..|++.......++++|+++.+++.++++ +. ++.+...|...++. .+++||+|++.
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 34999999999999999998632222567779999999999865 43 57888888877653 46789999972
Q ss_pred ---Cccc-------ccccC--------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 294 ---GCLI-------PWYMY--------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 294 ---~~L~-------h~~~d--------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
.++. +|..+ ...+|.++.++|||||+|++++...
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 1121 11110 2368999999999999999987543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.3e-08 Score=106.28 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=81.1
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKR 279 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~ 279 (629)
.....+.+++ .. +.+|||+|||+|.++..+++.+.. .++++|+|+.+++.|+++ +. ++.+.++|+..
T Consensus 201 ~~~~~~~~~~--~~--~~~VLDl~cGtG~~sl~la~~ga~--~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~ 274 (385)
T 2b78_A 201 QVRNELINGS--AA--GKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD 274 (385)
T ss_dssp HHHHHHHHTT--TB--TCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH
T ss_pred HHHHHHHHHh--cC--CCeEEEEeeccCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH
Confidence 3344455543 22 348999999999999999987643 457779999999999864 33 68898888755
Q ss_pred C-CC---CCCCeeEEEecCccc----ccccC----HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 280 L-PY---PARAFDMAHCSGCLI----PWYMY----DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 280 L-p~---pd~sFDlV~~s~~L~----h~~~d----~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
. +. ..++||+|++..... ....+ ...++.++.++|+|||+++++..+.
T Consensus 275 ~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 275 YFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp HHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 21 245899999854332 11112 2347788899999999999986533
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=98.06 Aligned_cols=118 Identities=12% Similarity=0.112 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceec-cccccC
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQ-DWCEAF 536 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~-~~~e~f 536 (629)
..|......+..++.... ..-.+|||+|||.|.++..|++... +|..+|.++.++..+.++.- +..++ |. +.+
T Consensus 21 ~~~~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~-~~~ 95 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDM-RDF 95 (239)
T ss_dssp CCHHHHHHHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCT-TTC
T ss_pred hhHHHHHHHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCH-HHc
Confidence 456665555555544222 2234799999999999999987743 55666776678888887731 23333 22 222
Q ss_pred CCCCcccceeec-cccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 537 STYPRTYDLIHA-SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 537 ~~yp~t~Dl~H~-~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+ ++.+||+|.| .++|....+.-+...+|.++.|+|||||.+++.+
T Consensus 96 ~-~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 96 R-LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp C-CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred c-cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 2 2689999995 4466554444456789999999999999999963
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-08 Score=99.08 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=76.6
Q ss_pred CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 221 GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 221 g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+.+.+|||+|||+|.++..+. . ...++++|+++.++++++++ +.+..+.+.|....+.+ ++||+|+..-++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~---~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-G---IASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-T---CSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc-c---CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHH
Confidence 346699999999999998887 2 22567779999999999875 67788888888877755 489999999888
Q ss_pred cccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 297 IPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 297 ~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+|+.......+.++.+.|+++|.++-.
T Consensus 179 h~LE~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 179 PLLEREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHHHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred HHhhhhchhhHHHHHHHhcCCCEEEEc
Confidence 777544334444888899999766543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=96.99 Aligned_cols=103 Identities=17% Similarity=0.335 Sum_probs=78.2
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc----cceeccccccCCCC--Ccccceeec
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL----IGTYQDWCEAFSTY--PRTYDLIHA 548 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl----i~~~~~~~e~f~~y--p~t~Dl~H~ 548 (629)
+....-.+|||+|||.|.++.+|++.+ .+|+.+|.++.++..+.++.- +..++ ..+..+ +.+||+|.+
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~ 120 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAA---TDILQFSTAELFDLIVV 120 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEE---CCTTTCCCSCCEEEEEE
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEE---cchhhCCCCCCccEEEE
Confidence 344556789999999999999999884 377778887788888887642 33333 233333 489999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.++|....+.-.+..+|.++.|+|||||.+++.+.
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 88887666554556789999999999999999753
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=105.06 Aligned_cols=102 Identities=12% Similarity=-0.070 Sum_probs=77.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCC----CCCCeeEEEe
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPY----PARAFDMAHC 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~----pd~sFDlV~~ 292 (629)
+.+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ +. ++.+..+|...+.. ..++||+|++
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~~--~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 348999999999999999998642 467779999999999865 33 58888888765421 2578999998
Q ss_pred cCcccccc--------cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 293 SGCLIPWY--------MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 293 s~~L~h~~--------~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
........ .....++.++.++|+|||.++++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 54331111 12456899999999999999998653
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.5e-08 Score=101.61 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=64.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
...++.+.+.+....+. +|||+|||+|.++..|++++. .++++|+++.+++.|+++ + .++.+..+|...+
T Consensus 28 ~~i~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSSD--IVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSS
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhC
Confidence 44566777776654444 899999999999999999865 456779999999999875 2 3688888888877
Q ss_pred CCCCCCeeEEEecCcccccc
Q 006834 281 PYPARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~ 300 (629)
+++ +||+|+++..+ ++.
T Consensus 103 ~~~--~~D~Vv~n~py-~~~ 119 (299)
T 2h1r_A 103 VFP--KFDVCTANIPY-KIS 119 (299)
T ss_dssp CCC--CCSEEEEECCG-GGH
T ss_pred Ccc--cCCEEEEcCCc-ccc
Confidence 754 89999997765 444
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-08 Score=102.48 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=73.6
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCCcccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+-..+.-.+..+..+|.+||+|.+.++|...
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~~ 168 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 168 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHhc
Confidence 46999999999999999876 54 556666666788887776 54221222224445567999999998887654
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.. -+...+|.|+.|+|||||.+++.+.
T Consensus 169 ~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 169 GH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp CG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 3578899999999999999999753
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-08 Score=100.27 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=71.7
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCC-cccceeeccc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.-.+|||+|||.|.++..|++..- .|+.+|.++.++..+.++ |+ +.... |. +.+ ++| .+||+|.+..
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l-~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQM-PFTDERFHIVTCRI 111 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CC-CSCTTCEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhC-CCCCCCEEEEEEhh
Confidence 345799999999999999988743 667777777788887665 44 23332 22 222 344 8999999987
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
++.... +.+.+|.|+-|+|||||++++.+
T Consensus 112 ~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHFP---NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhcC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 766553 56899999999999999999974
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-08 Score=96.04 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=88.6
Q ss_pred hhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh-cccceeccccccCCCCCcccceeecc
Q 006834 471 IDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER-GLIGTYQDWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 471 ~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er-gli~~~~~~~e~f~~yp~t~Dl~H~~ 549 (629)
++..+.++ .+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ ++--...|. +.+. .+.+||+|.+.
T Consensus 37 ~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~ 109 (211)
T 3e23_A 37 FLGELPAG--AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLF-HQLD-AIDAYDAVWAH 109 (211)
T ss_dssp HHTTSCTT--CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCG-GGCC-CCSCEEEEEEC
T ss_pred HHHhcCCC--CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeee-ccCC-CCCcEEEEEec
Confidence 33444444 3699999999999999998865 556667666788888887 432222222 2333 44899999998
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------------HHHHHHHHHHhcCC-CeEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV---------------EMLVKIRSITEGMR-WKSQIM 604 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------------~~~~~~~~~~~~l~-w~~~~~ 604 (629)
+++.... .-+...+|.|+-|+|||||.+++.... -....++++++.-. ++....
T Consensus 110 ~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 110 ACLLHVP-RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp SCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred CchhhcC-HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 8776543 235678999999999999999997321 13567888888777 776533
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=7.5e-08 Score=103.92 Aligned_cols=100 Identities=12% Similarity=-0.053 Sum_probs=74.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCC-CCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRL-PYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~L-p~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|.++..++..+.. ++++|+|+.+++.|+++ +....+.++|...+ +...+.||+|++.....
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 348999999999999999998764 56779999999999865 55556667776553 22234499999865331
Q ss_pred cc--------ccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PW--------YMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~--------~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. ..+...++..+.++|+|||+|++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 11224688999999999999998754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-08 Score=109.71 Aligned_cols=144 Identities=10% Similarity=0.164 Sum_probs=103.8
Q ss_pred chhhHHHHHHHHHHHHHh-hcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccc
Q 006834 454 LREDNELWKDRMTYYKKI-DGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDW 532 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~-~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~ 532 (629)
+......|..+...+... +..+....-.+|||+|||.|.++.+|++.+. +|+.+|.+.+++..+.++|+-.....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~ 157 (416)
T 4e2x_A 81 HSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFF 157 (416)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeee
Confidence 344556788777766653 3334333344799999999999999999876 677778888899999999873322111
Q ss_pred c----ccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH--------------------HH
Q 006834 533 C----EAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE--------------------ML 587 (629)
Q Consensus 533 ~----e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~--------------------~~ 587 (629)
. +.+ .++ .+||+|.+.++|.... +...+|.|+.|+|||||.+++..+.. ..
T Consensus 158 ~~~~~~~l-~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~ 233 (416)
T 4e2x_A 158 EKATADDV-RRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSA 233 (416)
T ss_dssp SHHHHHHH-HHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCH
T ss_pred chhhHhhc-ccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCH
Confidence 1 111 233 8999999998887664 67999999999999999999975420 13
Q ss_pred HHHHHHHhcCCCeEEEe
Q 006834 588 VKIRSITEGMRWKSQIM 604 (629)
Q Consensus 588 ~~~~~~~~~l~w~~~~~ 604 (629)
..++.++++-.++..-+
T Consensus 234 ~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 234 TSVQGMAQRCGFELVDV 250 (416)
T ss_dssp HHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 57888888877776533
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.5e-08 Score=111.76 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=78.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCC-CCCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKR-LPYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~-Lp~pd~sFDlV~~s~ 294 (629)
+.+|||+|||+|.++..++..+.. .++++|+|+.+++.|+++ +. ++.+.++|... ++...++||+|++..
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 348999999999999999988764 467779999999999875 33 48888888765 344567999999855
Q ss_pred ccc----------ccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 295 CLI----------PWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 295 ~L~----------h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
... +...+...++.++.++|+|||+|+++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 321 11123456899999999999999998654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=94.10 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhh--CCCeEEEEecCCCCCCCchHHHHhh----cc--cce
Q 006834 457 DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMS--KYPVWVMNVVPFHSNPDTLGAIYER----GL--IGT 528 (629)
Q Consensus 457 d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~--~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~ 528 (629)
....|.+++-....++..+....-.+|||+|||.|.++..|+ ..+. .|+.+|.++.++.++.++ |+ +.+
T Consensus 48 ~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~ 124 (240)
T 1xdz_A 48 KKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTF 124 (240)
T ss_dssp HHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred HHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEE
Confidence 345666655444333332221123469999999999988887 3333 355556665677776553 55 445
Q ss_pred eccccccCCC---CCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC---HHHHHHHHHHHhcCCCeEE
Q 006834 529 YQDWCEAFST---YPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT---VEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 529 ~~~~~e~f~~---yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~---~~~~~~~~~~~~~l~w~~~ 602 (629)
++.=.+.+.. .+.+||+|.+..+ .+++.++.++.|+|||||.+++.+. .+.+..+.+.++...+...
T Consensus 125 ~~~d~~~~~~~~~~~~~fD~V~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~ 197 (240)
T 1xdz_A 125 CHDRAETFGQRKDVRESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE 197 (240)
T ss_dssp EESCHHHHTTCTTTTTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred EeccHHHhcccccccCCccEEEEecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEe
Confidence 5422233332 2578999998653 4678999999999999999999753 3456667777777777764
Q ss_pred Eeec--CCCCCCCceEEEEEecccC
Q 006834 603 IMDH--ESGPFNPEKILFAAKTYWT 625 (629)
Q Consensus 603 ~~~~--e~~~~~~e~~l~~~K~~w~ 625 (629)
.... -......-.+++++|.=.+
T Consensus 198 ~~~~~~~~~~~~~~~l~~~~k~~~~ 222 (240)
T 1xdz_A 198 NIHSFKLPIEESDRNIMVIRKIKNT 222 (240)
T ss_dssp EEEEEECTTTCCEEEEEEEEECSCC
T ss_pred EEEEEecCCCCCceEEEEEEecCCC
Confidence 3221 1111234567777775433
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-08 Score=101.65 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=72.5
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc----cceec-cccccCCCCC-cccceeeccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL----IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl----i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
-.+|||+|||.|.++.+|++. +. +|+.+|.++.++..+.++.- +...+ |.. .+ ++| .+||+|++.+++
T Consensus 56 ~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~~~~l 130 (266)
T 3ujc_A 56 NSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDIL-TK-EFPENNFDLIYSRDAI 130 (266)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT-TC-CCCTTCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc-cC-CCCCCcEEEEeHHHHH
Confidence 347999999999999999886 43 55666666678888888752 33333 322 22 344 899999998877
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.... .-+...+|.++.|+|||||.+++.+
T Consensus 131 ~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 131 LALS-LENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhcC-hHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 6542 2356789999999999999999986
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-07 Score=91.04 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=87.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceeccccccCCCCC--cccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQDWCEAFSTYP--RTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~ 554 (629)
.+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++. +..-+.-.+..+..+| .+||+|.+.++|..
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 3799999999999999998765 4666777767888777663 2121222223333333 79999999888775
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------HHHHHHHHHHhcCCCeEEEee
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRDTV-----------EMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------~~~~~~~~~~~~l~w~~~~~~ 605 (629)
.. ..+...+|.++.|+|||||++++.+.. -....++++++.-.|+...+.
T Consensus 145 ~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 53 346788999999999999999985421 125788889998888876443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.4e-08 Score=98.71 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=81.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++.+- .+|+.+|.++.++..+.++ |+ +.+.+ |+ +.++.-+.+||+|.+.++|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~~~ 124 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEGAI 124 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESSCG
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcCCc
Confidence 4699999999999999998733 2455556666777777665 44 33333 32 3333223899999998888
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------H-------------HHHHHHHHHhcCCCeEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDTV--------E-------------MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------~-------------~~~~~~~~~~~l~w~~~ 602 (629)
... +.+.+|.++.|+|||||++++.+.. . ....+.+++....++..
T Consensus 125 ~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (267)
T 3kkz_A 125 YNI----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV 191 (267)
T ss_dssp GGT----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEE
T ss_pred eec----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEE
Confidence 654 5789999999999999999997531 0 13456667777777654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=99.10 Aligned_cols=121 Identities=10% Similarity=0.031 Sum_probs=85.4
Q ss_pred cCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 188 EGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 188 ~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
.|-.+.+.-....|......-...+.+.+. . +.+|||+|||+|.++.. ++.+. .++++|+++.+++.|+++
T Consensus 165 ~g~~f~~d~~~~~~~~~~~~er~~i~~~~~--~--~~~VLDlg~G~G~~~l~-a~~~~---~V~~vD~s~~ai~~a~~n~ 236 (336)
T 2yx1_A 165 NGYRLWVDIAKVYFSPRLGGERARIMKKVS--L--NDVVVDMFAGVGPFSIA-CKNAK---KIYAIDINPHAIELLKKNI 236 (336)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHCC--T--TCEEEETTCTTSHHHHH-TTTSS---EEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEehHHhccCCccHHHHHHHHHhcC--C--CCEEEEccCccCHHHHh-ccCCC---EEEEEECCHHHHHHHHHHH
Confidence 455555544445554433332224444432 2 34899999999999999 77332 567779999999999865
Q ss_pred ---CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 267 ---GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 267 ---g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+. ++.+..+|...+. ++||+|++.... ....++.++.++|+|||.+++..
T Consensus 237 ~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-----~~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 237 KLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-----FAHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp HHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT-----TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred HHcCCCCcEEEEECChHHhc---CCCcEEEECCcH-----hHHHHHHHHHHHcCCCCEEEEEE
Confidence 33 5889888887765 789999986422 22378999999999999999874
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-08 Score=96.42 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=74.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccc--eeccccccCCCCC-cccceeecccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIG--TYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~--~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
+..+. +|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++|+.. ..+ +.....+| .+||+|.+..+
T Consensus 44 ~~~~~--~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~--~d~~~~~~~~~~D~v~~~~~ 116 (218)
T 3ou2_A 44 GNIRG--DVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQ--QDLFDWTPDRQWDAVFFAHW 116 (218)
T ss_dssp TTSCS--EEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEE--CCTTSCCCSSCEEEEEEESC
T ss_pred CCCCC--eEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEe--cccccCCCCCceeEEEEech
Confidence 44444 799999999999999988754 5556666667899998887522 222 11122244 89999999887
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+....+ -.+..+|.++-|+|||||.+++.+.
T Consensus 117 l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 117 LAHVPD-DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCCH-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 765443 2357899999999999999999854
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=91.53 Aligned_cols=145 Identities=15% Similarity=0.130 Sum_probs=92.7
Q ss_pred CCcchhhchhhHHHHHHHHHHH-HHhhcccCCCCeeEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh-
Q 006834 447 SGITAEKLREDNELWKDRMTYY-KKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER- 523 (629)
Q Consensus 447 ~~~~~~~f~~d~~~w~~~v~~y-~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er- 523 (629)
+|+..+.|..+...-+..+... ...+ .+..+ .+|||+|||.|.++..|++.. - .+|+.+|.++.++..+.++
T Consensus 10 ~g~~d~~f~~~g~~~~~~i~~~~l~~l-~~~~~--~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~~ 84 (204)
T 3e05_A 10 GIDDDEFATAKKLITKQEVRAVTLSKL-RLQDD--LVMWDIGAGSASVSIEASNLMPN--GRIFALERNPQYLGFIRDNL 84 (204)
T ss_dssp CCCGGGSCCCTTTSCCHHHHHHHHHHT-TCCTT--CEEEEETCTTCHHHHHHHHHCTT--SEEEEEECCHHHHHHHHHHH
T ss_pred CCCCcHHhccCCcCChHHHHHHHHHHc-CCCCC--CEEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHH
Confidence 3444555655444433333221 1122 23444 469999999999999998763 1 1445556665677777664
Q ss_pred ---cc--cceec-cccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhc
Q 006834 524 ---GL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEG 596 (629)
Q Consensus 524 ---gl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~ 596 (629)
|+ +.+++ |..+.+.. ..+||+|-+++.+. +.+.+|.++.|+|||||.+++... .+....+.++++.
T Consensus 85 ~~~~~~~v~~~~~d~~~~~~~-~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~ 157 (204)
T 3e05_A 85 KKFVARNVTLVEAFAPEGLDD-LPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLED 157 (204)
T ss_dssp HHHTCTTEEEEECCTTTTCTT-SCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHH
T ss_pred HHhCCCcEEEEeCChhhhhhc-CCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHH
Confidence 44 33333 22222221 16799998866553 678999999999999999999854 4667788888888
Q ss_pred CCCeEEE
Q 006834 597 MRWKSQI 603 (629)
Q Consensus 597 l~w~~~~ 603 (629)
..|+..+
T Consensus 158 ~g~~~~~ 164 (204)
T 3e05_A 158 HGYMVEV 164 (204)
T ss_dssp TTCEEEE
T ss_pred CCCceeE
Confidence 8886543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.8e-08 Score=98.07 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=73.9
Q ss_pred HhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCc
Q 006834 470 KIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPR 541 (629)
Q Consensus 470 ~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~ 541 (629)
..+..+.++. +|||+|||.|.++..|++..- -+|+.+|.++.++..+.++ |+ +.+++ |+ +.++.-+.
T Consensus 39 ~~l~~~~~~~--~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~ 113 (257)
T 3f4k_A 39 SFINELTDDA--KIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNE 113 (257)
T ss_dssp TTSCCCCTTC--EEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTT
T ss_pred HHHhcCCCCC--eEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCC
Confidence 3333344443 699999999999999987631 1556666666777776655 44 33333 33 33332238
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+||+|++.+++... +.+.+|.++.|+|||||++++.+
T Consensus 114 ~fD~v~~~~~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 114 ELDLIWSEGAIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp CEEEEEEESCSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CEEEEEecChHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999998887654 57899999999999999999986
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-08 Score=106.30 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~ 285 (629)
...++.+.+.+.... ..+|||+|||+|.++..++++......++|+|+++.+++.| ..+.+.+.|....+ +.+
T Consensus 25 ~~l~~~~~~~~~~~~--~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~-~~~ 97 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWE-PGE 97 (421)
T ss_dssp HHHHHHHHHHCCCCT--TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSS
T ss_pred HHHHHHHHHhhccCC--CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcC-ccC
Confidence 556777777776433 33899999999999999998521123578889999998877 45788888877654 357
Q ss_pred CeeEEEecCccccccc----------CH------------------HHHHHHHHhcccCCcEEEEEeCC
Q 006834 286 AFDMAHCSGCLIPWYM----------YD------------------GLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~----------d~------------------~~~L~el~RvLKPGG~liis~P~ 326 (629)
+||+|+++..+..... +. ..++..+.++|+|||.+++..|.
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 8999999754432211 11 15688999999999999999874
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-08 Score=92.81 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=84.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc----cceec-cccccCCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL----IGTYQ-DWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl----i~~~~-~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
.+|||+|||.|.++.+|++.+. ++..+|.++.++..+.++ |+ +.+.+ |+.+.+. +.+||+|.++..
T Consensus 54 ~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~ 128 (194)
T 1dus_A 54 DDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNPP 128 (194)
T ss_dssp CEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECCC
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEECCC
Confidence 4699999999999999988733 556666665677777665 43 33333 3333221 478999998766
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
|.. ..-....+|.++.|+|||||.+++.+.. +....+.+.++..-+++.+....+ .-.+++++|
T Consensus 129 ~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~k 193 (194)
T 1dus_A 129 IRA--GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKG----GYRVLKSKK 193 (194)
T ss_dssp STT--CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEET----TEEEEEEEC
T ss_pred ccc--chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecCC----cEEEEEEee
Confidence 542 1234578999999999999999997654 233335555444434444443332 345666655
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-08 Score=93.78 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=96.6
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCC-CCCcccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFS-TYPRTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~-~yp~t~D 544 (629)
+.++. +|||+|||.|.++.+|++. +- -+|+.+|.++.++..+.++ |+ +.+++.=.+.+. ..+.+||
T Consensus 20 ~~~~~--~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 20 VKEGD--TVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp CCTTC--EEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred CCCCC--EEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence 44554 6999999999999998775 21 1556667776777777665 44 444442223344 3448999
Q ss_pred eeeccccc-ccc-----CCCcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCC---CeEEEeecCCC
Q 006834 545 LIHASGVF-SIY-----QDRCDITNILLEMDRILRPEGTVIFRDT------VEMLVKIRSITEGMR---WKSQIMDHESG 609 (629)
Q Consensus 545 l~H~~~~f-s~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~l~---w~~~~~~~e~~ 609 (629)
+|-++..| ... ...-+...+|.++-|+|||||.+++.+- .+....+.+.++.+. |.+..+..-+.
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~ 175 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQ 175 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTC
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccC
Confidence 99886544 110 1111234699999999999999999752 224556666666654 88877776666
Q ss_pred CCCCceEEEEEecc
Q 006834 610 PFNPEKILFAAKTY 623 (629)
Q Consensus 610 ~~~~e~~l~~~K~~ 623 (629)
+..+..++|.+|..
T Consensus 176 ~~~pp~~~~~~~~~ 189 (197)
T 3eey_A 176 ANCPPILVCIEKIS 189 (197)
T ss_dssp CSCCCEEEEEEECC
T ss_pred ccCCCeEEEEEEcc
Confidence 66788888888864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-08 Score=97.79 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=83.9
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc---cceeccccccCCCCCcccceeeccccccccCCC
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL---IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDR 558 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~ 558 (629)
+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.+++. +..++.-.+.++.-+.+||+|.+.++|...
T Consensus 56 ~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--- 129 (242)
T 3l8d_A 56 EVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT--- 129 (242)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS---
T ss_pred eEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc---
Confidence 699999999999999998865 45666766688999988853 222321112232223899999998887754
Q ss_pred cCHHHHHHHHhhcccCCcEEEEEeCH----------------------HHHHHHHHHHhcCCCeEE
Q 006834 559 CDITNILLEMDRILRPEGTVIFRDTV----------------------EMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 559 c~~~~~l~e~dRiLrPgG~~i~~d~~----------------------~~~~~~~~~~~~l~w~~~ 602 (629)
-+...+|.++.|+|||||.+++.+.. -....+++++....++..
T Consensus 130 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 195 (242)
T 3l8d_A 130 EEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV 195 (242)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence 35588999999999999999998521 013467788888888765
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6e-08 Score=103.92 Aligned_cols=102 Identities=14% Similarity=0.011 Sum_probs=77.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCC----CCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPY----PARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~----pd~sFDlV~~s 293 (629)
+.+|||+|||+|.++..+++. ...++++|+++.+++.|+++ +. ++.+.++|...+.. .+++||+|++.
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 448999999999999999987 34677889999999999875 33 48888888765421 25789999985
Q ss_pred Ccccccc--------cCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 294 GCLIPWY--------MYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 294 ~~L~h~~--------~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
....... .....++.++.++|+|||+++++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 4331211 123568999999999999999987543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.2e-06 Score=90.51 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=71.5
Q ss_pred eEEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHh----hccc---ceeccccccCCCCC-cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYE----RGLI---GTYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~e----rgli---~~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
.+|||+|||+|.++.+|++.. - ..|+.+|.++.++..+.+ .|+- .+--.+...+..+| .+||+|-++..
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~--~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP 301 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCC
T ss_pred CeEEEEeCcchHHHHHHHHHCCC--CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCC
Confidence 579999999999999998762 1 134445555456655544 3431 12112223444556 79999999888
Q ss_pred cccc--CCCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHh
Q 006834 552 FSIY--QDRCDITNILLEMDRILRPEGTVIFRDTV--EMLVKIRSITE 595 (629)
Q Consensus 552 fs~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~ 595 (629)
|... ..+-....+|.++-|+|||||.+++..+. .....++++..
T Consensus 302 fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 302 FHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp C-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence 7532 22333456899999999999999996433 34555666555
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.3e-08 Score=94.52 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=71.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-------cceeccccccCCCC---Cccccee
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-------IGTYQDWCEAFSTY---PRTYDLI 546 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-------i~~~~~~~e~f~~y---p~t~Dl~ 546 (629)
.+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ |+ +... +..+... +.+||+|
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFK---VENASSLSFHDSSFDFA 105 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEE---ECCTTSCCSCTTCEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEE---EecccccCCCCCceeEE
Confidence 3699999999999999998865 566667666788877774 32 2222 2333333 3899999
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.+..++....+.-....+|.++-|+|||||.+++.+.
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 9988887665544445899999999999999999753
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-08 Score=98.00 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=76.8
Q ss_pred HhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCCCCcccce
Q 006834 470 KIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFSTYPRTYDL 545 (629)
Q Consensus 470 ~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~yp~t~Dl 545 (629)
.++..+....-.+|||+|||.|.++.+|++.+.- +|+.+|.++.++..+.++.- +.... |. +.++.-+.+||+
T Consensus 35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEE
T ss_pred HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEE
Confidence 3344344333457999999999999999988641 56666776678888888753 22232 22 233322389999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|.+.++|... -+...+|.++.|+|||||.+++..
T Consensus 112 v~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 112 VLSSLALHYI---ASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEchhhhhh---hhHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998887765 356899999999999999999973
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-08 Score=100.48 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=72.6
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-----cceec-cccccCCCCC-cccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-----IGTYQ-DWCEAFSTYP-RTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-----i~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~ 554 (629)
.|||+|||.|.++.+|++... -+++-+|.++.++..+.++.- +-+++ +|-+-...+| .+||.|..+.+.+.
T Consensus 63 rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~ 140 (236)
T 3orh_A 63 RVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 140 (236)
T ss_dssp EEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred eEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeecc
Confidence 599999999999999998754 345556666678888877543 22222 5544455677 88999987776665
Q ss_pred cC--CCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 555 YQ--DRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 555 ~~--~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+. +.-+.+.++.|+-|+|||||.|++-
T Consensus 141 ~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 141 EETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 43 3345678999999999999999985
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=100.18 Aligned_cols=93 Identities=22% Similarity=0.266 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
..+|||+|||+|.++..|++.+. .++++|+++.+++.|+++ +..+.|..+|...+.. .+||+|++......
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAG 365 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTC
T ss_pred CCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccc
Confidence 34899999999999999999865 456679999999999864 4448888888877642 28999998654322
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
. ...++..+. .|+|||.++++.
T Consensus 366 ~---~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 L---HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp S---CHHHHHHHH-HHCCSEEEEEES
T ss_pred h---HHHHHHHHH-hcCCCcEEEEEC
Confidence 1 234555554 599999999983
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.9e-08 Score=99.31 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=73.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCC-Ccccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTY-PRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~y-p~t~Dl~H~~~~f 552 (629)
..|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+ +..++.=.+.+..+ +.+||+|.+.+++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 4699999999999999998865 456666666788887776 44 33444222344433 4899999998888
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.... +.+.+|.|+.|+|||||.+++.+.
T Consensus 147 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 147 EWVA---DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp GGCS---CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hccc---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 7654 458899999999999999999864
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-08 Score=99.88 Aligned_cols=96 Identities=23% Similarity=0.293 Sum_probs=70.6
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCC-cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
.+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+ +.+.+.=.+.+ ++| .+||+|.+.++
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~ 159 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQDA 159 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEESC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCCCCCEeEEEecch
Confidence 46999999999999999876 54 556666666777777654 44 33333111222 233 79999999888
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+....+ ...+|.|+.|+|||||.+++.+.
T Consensus 160 l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 160 FLHSPD---KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp GGGCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcCC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence 776554 68999999999999999999853
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-08 Score=98.36 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=69.1
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~ 551 (629)
.+|||+|||.|.++.+|++. +. +|+.+|.++.++..+.++ |+ +.+.+ |+ +.++. +.+||+|.+.++
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA-AGYVA-NEKCDVAACVGA 112 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC-TTCCC-SSCEEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh-HhCCc-CCCCCEEEECCC
Confidence 36999999999999999865 33 445566666777777654 54 33333 22 22222 689999999777
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+-... +...+|.|+-|+|||||.+++.+.
T Consensus 113 ~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 113 TWIAG---GFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp GGGTS---SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hHhcC---CHHHHHHHHHHHcCCCeEEEEecC
Confidence 65443 468999999999999999999863
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-08 Score=97.03 Aligned_cols=96 Identities=21% Similarity=0.387 Sum_probs=71.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC-cccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++.+|++..- +|+.+|.++.++..+.++ |+ +.+.+.=.+.++ ++ .+||+|.+..++.
T Consensus 23 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 98 (239)
T 1xxl_A 23 HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYAAH 98 (239)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESCGG
T ss_pred CEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcEEEEEECCchh
Confidence 4699999999999999988753 566667766777776654 44 333332123333 34 8999999987776
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
... +.+.+|.|+.|+|||||++++.+.
T Consensus 99 ~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 99 HFS---DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp GCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcc---CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 553 568999999999999999999753
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.4e-08 Score=99.41 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=94.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhh--CCCeEEEEecCCCCCCCchHHHHhhc----c---cceec-cccccCCCCCcccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMS--KYPVWVMNVVPFHSNPDTLGAIYERG----L---IGTYQ-DWCEAFSTYPRTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~--~~~v~~mnv~~~~~~~~~l~~~~erg----l---i~~~~-~~~e~f~~yp~t~D 544 (629)
+..+. +|||+|||.|.++.+|+ ..+- .+|+.+|.++.++..+.++. + +.+++ |..+ + .++.+||
T Consensus 116 l~~~~--~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD 189 (305)
T 3ocj_A 116 LRPGC--VVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-L-DTREGYD 189 (305)
T ss_dssp CCTTC--EEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-C-CCCSCEE
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-C-CccCCeE
Confidence 44443 59999999999999994 3322 24555666667777776653 3 33333 2222 2 2449999
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------------------------------------H
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV---------------------------------------E 585 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------------------------------------~ 585 (629)
+|.+.+++....+.-....+|.++-|+|||||.+++.+.. .
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR 269 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccC
Confidence 9999888776555544456899999999999999998611 1
Q ss_pred HHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 586 MLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 586 ~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
....+.++++.-.++...+... ....-..++++|+
T Consensus 270 ~~~~~~~~l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 270 THAQTRAQLEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred CHHHHHHHHHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 2567888888888887654432 2234567888885
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=92.12 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=76.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----ccc---ceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLI---GTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli---~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++.+. .|+.+|.++.++..+.++ |+- .+++ |..+.+... ..||+|-+++.+
T Consensus 57 ~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~~ 132 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGGGG 132 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECSCC
T ss_pred CEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEECCcc
Confidence 4699999999999999988743 556667666788777665 442 3333 222212222 479998875422
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~ 602 (629)
+.+ ++.++.|+|||||.+++... .+....+.+.++...+++.
T Consensus 133 -------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 133 -------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL 175 (204)
T ss_dssp -------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred -------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence 566 99999999999999999754 5567777777777767654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-07 Score=93.79 Aligned_cols=142 Identities=11% Similarity=0.058 Sum_probs=91.9
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc---------------------------------
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL--------------------------------- 525 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl--------------------------------- 525 (629)
.-.+|||+|||.|.++..|++.+. .+|+.+|.++.++..+.++--
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 346799999999999999988765 567777777677877755421
Q ss_pred --c-ceec-cccccCCCCC---cccceeeccccccccC-CCcCHHHHHHHHhhcccCCcEEEEEeCHH------------
Q 006834 526 --I-GTYQ-DWCEAFSTYP---RTYDLIHASGVFSIYQ-DRCDITNILLEMDRILRPEGTVIFRDTVE------------ 585 (629)
Q Consensus 526 --i-~~~~-~~~e~f~~yp---~t~Dl~H~~~~fs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d~~~------------ 585 (629)
+ .+.+ |..+....-+ .+||+|.+..++.... +.-+...+|.++-|+|||||++++.+...
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 2 2222 3222111123 7999999977765322 12245779999999999999999976221
Q ss_pred ----HHHHHHHHHhcCCCeEEEeecCCC-------CCCCceEEEEEec
Q 006834 586 ----MLVKIRSITEGMRWKSQIMDHESG-------PFNPEKILFAAKT 622 (629)
Q Consensus 586 ----~~~~~~~~~~~l~w~~~~~~~e~~-------~~~~e~~l~~~K~ 622 (629)
....+.+++....++......... .....-+++|+|.
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 234777888777777654332211 1113446777774
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-07 Score=87.77 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=80.3
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----ccc-c-eec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GLI-G-TYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gli-~-~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++. +- ..|+.+|.++.++..+.++ |+- . .++ |..+.+...+.+||+|.+.+.+
T Consensus 27 ~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 46999999999999999877 22 3456667666788887765 442 1 333 4444444444789999986666
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~ 602 (629)
.. ..+|.++.|+|||||.+++.+. .+....+..+++...++..
T Consensus 105 ~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 105 TA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp TC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred cH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 43 6799999999999999999865 4456667777776666654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-07 Score=94.37 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=66.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.+.+.+....+. +|||+|||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|...+++
T Consensus 16 ~~~~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~ 90 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 90 (244)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhCCCCCCC--EEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCc
Confidence 55677777777654444 899999999999999999874 4567799999999999864 468899999999888
Q ss_pred CC-CCeeEEEecCcc
Q 006834 283 PA-RAFDMAHCSGCL 296 (629)
Q Consensus 283 pd-~sFDlV~~s~~L 296 (629)
++ ..| .|+++..+
T Consensus 91 ~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 91 PKNQSY-KIFGNIPY 104 (244)
T ss_dssp CSSCCC-EEEEECCG
T ss_pred ccCCCe-EEEEeCCc
Confidence 74 456 45555543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.4e-08 Score=93.58 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=90.7
Q ss_pred eEEEeecccchhHHhhhhCCC--eEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYP--VWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.+|||+|||.|.++.+|++.. - ..|+.+|.++.++..+.++ |+ +.... |. +.++ ++ .+||+|.+..
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEK--GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE-NKIP-LPDNTVDFIFMAF 114 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT-TBCS-SCSSCEEEEEEES
T ss_pred CEEEEEecCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc-ccCC-CCCCCeeEEEeeh
Confidence 369999999999999997652 1 1444555555677777665 33 23332 22 2222 34 7899999988
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-------------HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEE
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-------------EMLVKIRSITEGMRWKSQIMDHESGPFNPEKIL 617 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-------------~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l 617 (629)
++.... +...+|.|+-|+|||||.+++.+.. -....+.++++...++......- + ....++
T Consensus 115 ~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~--~~~~~~ 188 (219)
T 3dh0_A 115 TFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV-G--KYCFGV 188 (219)
T ss_dssp CGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE-T--TTEEEE
T ss_pred hhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee-C--CceEEE
Confidence 887553 4688999999999999999998521 12577888888888886543221 1 256778
Q ss_pred EEEec
Q 006834 618 FAAKT 622 (629)
Q Consensus 618 ~~~K~ 622 (629)
+++|+
T Consensus 189 ~~~k~ 193 (219)
T 3dh0_A 189 YAMIV 193 (219)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88875
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=90.73 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=80.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeeccccccccCCCc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c 559 (629)
.+|||+|||.|.++..|.+. +.+|.++.++..+.++++ .++..-.+.++ ++ .+||+|.+.+++....
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~--- 116 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTAENLP-LKDESFDFALMVTTICFVD--- 116 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBTTBCC-SCTTCEEEEEEESCGGGSS---
T ss_pred CcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCC-EEEEcccccCC-CCCCCeeEEEEcchHhhcc---
Confidence 46999999999999999887 344555578888888854 33331122332 33 7999999988776543
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeCHH------------------------HHHHHHHHHhcCCCeEE
Q 006834 560 DITNILLEMDRILRPEGTVIFRDTVE------------------------MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~~d~~~------------------------~~~~~~~~~~~l~w~~~ 602 (629)
+...+|.++-|+|||||.+++.+... ....+++++....++..
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 46889999999999999999974310 24677788888778765
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-08 Score=98.09 Aligned_cols=95 Identities=8% Similarity=0.137 Sum_probs=71.1
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-ccceec-cccccCCCCCcccceeeccccccccCC
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-LIGTYQ-DWCEAFSTYPRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-li~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~~~ 557 (629)
-.+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++. -+.... |. +.++ ++.+||+|++..+|....
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~- 131 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADA-RNFR-VDKPLDAVFSNAMLHWVK- 131 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCT-TTCC-CSSCEEEEEEESCGGGCS-
T ss_pred CCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-hhCC-cCCCcCEEEEcchhhhCc-
Confidence 34799999999999999988654 5556666667888888773 122232 22 2333 468999999987776443
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+.+.+|.|+-|+|||||++++..
T Consensus 132 --d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 132 --EPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCcEEEEEe
Confidence 56899999999999999999974
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-07 Score=94.43 Aligned_cols=93 Identities=15% Similarity=0.261 Sum_probs=70.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc--c---cceec-cccccCCCCC-cccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG--L---IGTYQ-DWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg--l---i~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++- . +...+ |+ +.++ +| .+||+|++..+|.
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIP-LPDESVHGVIVVHLWH 115 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCC-SCTTCEEEEEEESCGG
T ss_pred CEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCC-CCCCCeeEEEECCchh
Confidence 4799999999999999998854 5666677777888888772 1 22333 22 2333 44 7999999987776
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
... +.+.+|.|+.|+|||||.+++.
T Consensus 116 ~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 544 5689999999999999999985
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=91.09 Aligned_cols=95 Identities=21% Similarity=0.388 Sum_probs=69.1
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-ccceeccccccCCCCC-cccceeeccccccccCC
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-LIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQD 557 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-li~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~ 557 (629)
-.+|||+|||.|.++..| +. -+++.+|.++.++..+.++. -+..++.-.+.++ +| .+||+|.+.+++....
T Consensus 37 ~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALP-FPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCC-SCSSCEEEEEEESCTTTCS-
T ss_pred CCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCC-CCCCcEEEEEEcChhhhcC-
Confidence 347999999999999998 22 14556677667888888873 1233331122232 34 7999999988776543
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+...+|.|+.|+|||||.+++.+.
T Consensus 110 --~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 110 --DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCCEEEEEec
Confidence 678999999999999999999854
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=91.54 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=93.0
Q ss_pred eEEEeeccc-chhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceeccccccCCCCC-cccceeecccccc
Q 006834 481 RNVMDMNAY-LGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQDWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g-~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
.+|||+||| .|.++.+|++.. ..+|+.+|.++.++..+.++ |+ +.+++.=.+.+..+| .+||+|-++-.|.
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 369999999 999999998762 23556666666677766554 44 334431112355566 8999999875543
Q ss_pred ccC----------------CCcCHHHHHHHHhhcccCCcEEEEEe--CHHHHHHHHHHHhcCCCeEEEeecCCCCCCCce
Q 006834 554 IYQ----------------DRCDITNILLEMDRILRPEGTVIFRD--TVEMLVKIRSITEGMRWKSQIMDHESGPFNPEK 615 (629)
Q Consensus 554 ~~~----------------~~c~~~~~l~e~dRiLrPgG~~i~~d--~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~ 615 (629)
... ....+..+|.++.|+|||||.+++.- .......+.+.++...|+...+....|. .--.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~-~~~~ 213 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT-RWRH 213 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--CEE
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-eEEE
Confidence 211 11224779999999999999999843 3456788888889999988776655443 3455
Q ss_pred EEEEEe
Q 006834 616 ILFAAK 621 (629)
Q Consensus 616 ~l~~~K 621 (629)
+|+.+|
T Consensus 214 ~l~f~~ 219 (230)
T 3evz_A 214 SLIFFK 219 (230)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 666665
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=90.73 Aligned_cols=127 Identities=10% Similarity=0.106 Sum_probs=83.3
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC--cccceeeccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP--RTYDLIHASGVF 552 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp--~t~Dl~H~~~~f 552 (629)
+|||+|||.|.++..|+.. +- .+++.+|.++..+..+.++ |+ +.+++ ..+..++ .+||+|.+.++
T Consensus 68 ~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~~~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 68 RFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ---SRVEEFPSEPPFDGVISRAF- 141 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE---CCTTTSCCCSCEEEEECSCS-
T ss_pred eEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEe---cchhhCCccCCcCEEEEecc-
Confidence 6999999999999998764 21 1445556555676666553 55 33443 2333332 78999988543
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEee--cCCCCCCCceEEEEEec
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMD--HESGPFNPEKILFAAKT 622 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~--~e~~~~~~e~~l~~~K~ 622 (629)
...+.++.++-|+|+|||++++.........++.+.+ .|+..... .-........+++++|.
T Consensus 142 ------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 4578899999999999999999866555566776666 66654211 11122245677777774
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=88.29 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=81.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++... +|+.+|.++.++..+.++ |+ +.+++ |+.+ .+| .+||+|.++++
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLEFNKAFIGGT- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCCCSEEEECSC-
T ss_pred CEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCCCcEEEECCc-
Confidence 3699999999999999988433 455556665677777665 44 33333 3333 344 68999999766
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHhcCCCeEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD-TVEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~~l~w~~~~~ 604 (629)
.+.+.+|.++.|+ |||.+++.+ ..+....+.+.++...|++..+
T Consensus 110 ------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 ------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp ------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 5678999999999 999999987 5566778888888888988765
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=96.85 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=82.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
..|||+|||.|.++.+|++.+. +|+.+|.++..+..+.++ |+ +.+++ |.. .+.. +.+||+|.+..+|..
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDIN-AANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG-GCCC-CSCEEEEEECSSGGG
T ss_pred CcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc-cccc-cCCccEEEEccchhh
Confidence 4599999999999999998865 566777776777766654 44 22222 222 2222 689999999888864
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------HHHHHHHHHHhcCCCeEEEee
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRDTV--------------EMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------~~~~~~~~~~~~l~w~~~~~~ 605 (629)
. +.-.+..+|.++.|+|||||.+++.... -....+++++.. |++..+.
T Consensus 197 ~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 197 L-NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp S-CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred C-CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 4 3346788999999999999998774221 114567777776 8876543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.7e-08 Score=94.94 Aligned_cols=117 Identities=20% Similarity=0.236 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccc
Q 006834 461 WKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCE 534 (629)
Q Consensus 461 w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e 534 (629)
+...+....+++..+....-.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++ |+ +..++ |..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 99 (252)
T 1wzn_A 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE 99 (252)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred hHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh
Confidence 333444444444433333345799999999999999998865 567777777788877664 33 33333 2222
Q ss_pred cCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 535 AFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 535 ~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+ ..+.+||+|.+....-.+.+.-+...+|.++-|+|||||.+++.-
T Consensus 100 -~-~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 100 -I-AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp -C-CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -c-ccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 2 245889999874221122233356789999999999999999863
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.3e-08 Score=106.41 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=79.6
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC-CCCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP-YPAR 285 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp-~pd~ 285 (629)
+...+...++. +|||+|||+|..+..|++.......++++|+++.+++.++++ +. ++.+...|...++ ..++
T Consensus 97 ~~~~L~~~~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~ 174 (456)
T 3m4x_A 97 VGTAAAAKPGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSG 174 (456)
T ss_dssp HHHHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTT
T ss_pred HHHHcCCCCCC--EEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccc
Confidence 33444444444 999999999999999998632222467779999999998864 43 4777777776654 3457
Q ss_pred CeeEEEecCc------cc-------ccccC--------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 286 AFDMAHCSGC------LI-------PWYMY--------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 286 sFDlV~~s~~------L~-------h~~~d--------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+||+|++... +. .+..+ ...+|.++.++|||||+|++++...
T Consensus 175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 8999997321 11 11111 1268999999999999999987544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.2e-08 Score=97.55 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=69.1
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+ +.+.+ |.. .+ ++| .+||+|.+.+
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~~~ 137 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAM-DL-PFEDASFDAVWALE 137 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT-SC-CSCTTCEEEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccc-cC-CCCCCCccEEEEec
Confidence 47999999999999999864 43 555556666777777665 55 33333 222 22 244 7999999988
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+|.... +.+.+|.|+.|+|||||.+++.+
T Consensus 138 ~l~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 138 SLHHMP---DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp CTTTSS---CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhCC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 877553 45899999999999999999986
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.6e-08 Score=92.55 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=82.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCCcccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
.+|||+|||.|.++.+|++.+. .+|+.+|.++.++..+.++ |+ +.+.+ +..+...+.+||+|.++.++.
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~fD~i~~~~~~~- 136 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQK--TSLLADVDGKFDLIVANILAE- 136 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEE--SSTTTTCCSCEEEEEEESCHH-
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEe--ccccccCCCCceEEEECCcHH-
Confidence 3699999999999999988754 3566667666777777765 54 33333 122233359999999976553
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEEEee
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~ 605 (629)
.+..+|.++.|+|||||.+++.+. ......+.+++....++.....
T Consensus 137 -----~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 137 -----ILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEee
Confidence 257789999999999999999753 3456677888887777765443
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=97.26 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=89.3
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc--ccceeccccc--cCCCCC-cccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG--LIGTYQDWCE--AFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg--li~~~~~~~e--~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
++|||+|||+|+|+..|++.+. -.|+.+|.+++||...+.+. ++..-..-.. ....+| .+||++-++..|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~-- 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI-- 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS--
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh--
Confidence 4699999999999999988763 34566677778888755421 1111000001 112345 4599999987775
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeC----------------------HHHHHHHHHHHhcCCCeEEEeec--CCCCC
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDT----------------------VEMLVKIRSITEGMRWKSQIMDH--ESGPF 611 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------------------~~~~~~~~~~~~~l~w~~~~~~~--e~~~~ 611 (629)
.+..+|-|+.|+|||||.+++-.. .....++...+...-|.+.-... -.|+.
T Consensus 163 ----sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~ 238 (291)
T 3hp7_A 163 ----SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGH 238 (291)
T ss_dssp ----CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGG
T ss_pred ----hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Confidence 347899999999999999988611 12467788888888998764432 23333
Q ss_pred -CCceEEEEEe
Q 006834 612 -NPEKILFAAK 621 (629)
Q Consensus 612 -~~e~~l~~~K 621 (629)
+.|-++.++|
T Consensus 239 gn~e~l~~~~~ 249 (291)
T 3hp7_A 239 GNIEFLAHLEK 249 (291)
T ss_dssp GCCCEEEEEEE
T ss_pred cCHHHHHHhhh
Confidence 5677777777
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-08 Score=102.70 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=73.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c------cceec-cccccCC--CCC-ccccee
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L------IGTYQ-DWCEAFS--TYP-RTYDLI 546 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l------i~~~~-~~~e~f~--~yp-~t~Dl~ 546 (629)
.+|||+|||+|.++..|++.+. +|+.+|.++.++..+.++. . +-+.+ ++. .++ -++ .+||+|
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~V 134 (293)
T 3thr_A 59 HRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL-TLDKDVPAGDGFDAV 134 (293)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG-GHHHHSCCTTCEEEE
T ss_pred CEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh-hCccccccCCCeEEE
Confidence 4699999999999999999876 7778888878888887652 1 11111 221 111 034 899999
Q ss_pred ecc-ccccccCC----CcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 547 HAS-GVFSIYQD----RCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 547 H~~-~~fs~~~~----~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
+|. .+|....+ .-....+|.++.|+|||||++++....
T Consensus 135 ~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 997 57665444 445788999999999999999998653
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-07 Score=87.73 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=90.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceec-cccccCCCCC-cccceeecc-ccccccC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQ-DWCEAFSTYP-RTYDLIHAS-GVFSIYQ 556 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~-~~~e~f~~yp-~t~Dl~H~~-~~fs~~~ 556 (629)
.+|||+|||.|.++..|++.+. +++.+|.++..+..+.++.- +.+++ |..+ + .+| .+||+|.+. .++...
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~-~~~~~~~D~i~~~~~~~~~~- 121 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-D-QISETDFDLIVSAGNVMGFL- 121 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-S-CCCCCCEEEEEECCCCGGGS-
T ss_pred CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-C-CCCCCceeEEEECCcHHhhc-
Confidence 3699999999999999988864 55666666567777776632 33333 2221 2 233 789999997 455543
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCHH---HHHHHHHHHhcCCCeEEEeecC--CCC---CCCceEEEEEec
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDTVE---MLVKIRSITEGMRWKSQIMDHE--SGP---FNPEKILFAAKT 622 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---~~~~~~~~~~~l~w~~~~~~~e--~~~---~~~e~~l~~~K~ 622 (629)
..-+...+|.++.|+|+|||.+++..... ....+.++++...+++...... ..+ ..+.-+++++|+
T Consensus 122 ~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 22245779999999999999999975432 3567777777777776543221 111 234557777774
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=103.30 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC------------CcEeEEEeecCcHHHHHHHHHc----CC-
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD------------ILTMSFARRDTHEAQVQFALER----GV- 268 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g------------~~~v~i~gvDiS~~~i~~A~er----g~- 268 (629)
...++.+.+++....+. +|||.|||+|.++..+++.. .....++|+|+++.+++.|+.+ +.
T Consensus 157 ~~v~~~mv~~l~~~~~~--~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~ 234 (445)
T 2okc_A 157 RPLIQAMVDCINPQMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 234 (445)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCC--EEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 45677777777554443 89999999999998887641 0123567889999999999853 44
Q ss_pred --CeEEEEecCCCCCCCCCCeeEEEecCcccccccC----------------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 269 --PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY----------------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 269 --~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d----------------~~~~L~el~RvLKPGG~liis~P 325 (629)
...+.++|....+.. .+||+|+++..+.+.... ...++..+.++|||||++++..|
T Consensus 235 ~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 235 TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 567888887766543 489999998776543211 13689999999999999999876
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=92.74 Aligned_cols=123 Identities=18% Similarity=0.166 Sum_probs=85.5
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc------cceeccccccCCCCCcccceeecccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL------IGTYQDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl------i~~~~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
-.+|||+|||.|.++.+|++... .+|+.+|.++.++..+.++.- +..++.=.+.+..-+.+||+|.+..++.
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 45799999999999999988752 355666766678888777642 2222211122222236899999987776
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---------------HHHHHHHHHhcCCCeEEEee
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDTVE---------------MLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---------------~~~~~~~~~~~l~w~~~~~~ 605 (629)
...+. .+..+|.++.|+|||||.+++.+... ....+++++....++..-..
T Consensus 158 ~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 158 HLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred hCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 54331 24689999999999999999976421 36778888888888876543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=95.70 Aligned_cols=98 Identities=19% Similarity=0.338 Sum_probs=71.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeeccccccccCCCc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c 559 (629)
.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++..-.....=.+.++ +| .+||+|-+.+++-.+..
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~~-- 129 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVE-- 129 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCS--
T ss_pred CeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCC-CCCCCEEEEEEcchhhhccc--
Confidence 4799999999999999998864 56667777788999888865112221112222 44 79999998664433322
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 560 DITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
+...+|.|+.|+|||||.+++....
T Consensus 130 ~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 130 NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 2788999999999999999997543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=91.27 Aligned_cols=95 Identities=16% Similarity=0.261 Sum_probs=70.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c-cceec-cccccCCCCCcccceeeccc-ccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L-IGTYQ-DWCEAFSTYPRTYDLIHASG-VFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l-i~~~~-~~~e~f~~yp~t~Dl~H~~~-~fs 553 (629)
.+|||+|||.|.++..|++. .+|+.+|.++.++..+.++. . +...+ |.. .+ .+|.+||+|.+.. ++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~-~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR-EL-ELPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGG-GC-CCSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChh-hc-CCCCCcCEEEEeCCchh
Confidence 57999999999999999887 36677777777888877762 1 23333 222 12 2458999999865 666
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
...+.-+...+|.++.|+|||||.+++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5545556778999999999999999983
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-08 Score=95.16 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=86.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceec-cccccCCCCC-cccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQ-DWCEAFSTYP-RTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~ 554 (629)
.+|||+|||.|.++..|++.+.- +|+.+|.++..+..+.++. -+.+.+ |.. .+ .++ .+||+|-+.++|..
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~-~~-~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR-KL-DFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTT-SC-CSCSSCEEEEEEESHHHH
T ss_pred CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchh-cC-CCCCCcccEEEECcchhh
Confidence 35999999999999999887531 4555666667777777763 123333 222 22 344 79999998877753
Q ss_pred cC------------CCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHH--hcCCCeEEEeecCCCCCCCceEEEEE
Q 006834 555 YQ------------DRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSIT--EGMRWKSQIMDHESGPFNPEKILFAA 620 (629)
Q Consensus 555 ~~------------~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~--~~l~w~~~~~~~e~~~~~~e~~l~~~ 620 (629)
.. +..+...+|.|+-|+|||||.+++.+..... ..+.++ ....|.......+++. .-.+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 196 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATYGSGF--HFHLYLMH 196 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEESGGG--CEEEEEEE
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEecCcc--eEEEEEEE
Confidence 32 1224578999999999999999998765321 122333 3446876544444332 34566666
Q ss_pred e
Q 006834 621 K 621 (629)
Q Consensus 621 K 621 (629)
|
T Consensus 197 ~ 197 (215)
T 2pxx_A 197 K 197 (215)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.2e-08 Score=98.55 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=68.9
Q ss_pred CeeEEEeecccchhHHhhhh---CCCeEEEEecCCCCCCCchHHHHhh-----cc---cceeccccccCCCCC------c
Q 006834 479 RYRNVMDMNAYLGGFAAAMS---KYPVWVMNVVPFHSNPDTLGAIYER-----GL---IGTYQDWCEAFSTYP------R 541 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~---~~~v~~mnv~~~~~~~~~l~~~~er-----gl---i~~~~~~~e~f~~yp------~ 541 (629)
.-.+|||+|||.|.++..|+ .... +|+.+|.++.++..+.++ |. +..++.=.+.++.-. .
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 34579999999999999999 4433 556667776788888776 33 333331112222112 6
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+||+|++..++... +...+|.++.|+|||||.+++
T Consensus 113 ~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 99999998776644 789999999999999999998
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-07 Score=95.91 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=69.9
Q ss_pred eeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCCcccceeeccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYPRTYDLIHASG 550 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp~t~Dl~H~~~ 550 (629)
-.+|||+|||+|.++..|++. +. +|+.+|.++.++..+.++ ++ +.... |.. .+ +++.+||+|++..
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~-~~~~~fD~v~~~~ 97 (284)
T 3gu3_A 23 PVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EI-ELNDKYDIAICHA 97 (284)
T ss_dssp CCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TC-CCSSCEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hc-CcCCCeeEEEECC
Confidence 357999999999999999876 23 344555555677766655 21 22333 322 22 2468999999988
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
++.... +.+.+|.++-|+|||||++++.+..
T Consensus 98 ~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMT---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 877543 5589999999999999999998754
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-07 Score=98.26 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=79.4
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~ 279 (629)
...+++.+.+.+....+ .+|||+|||+|.++..|++.+. .++++|+|+.+++.|+++ +. ++.|..+|...
T Consensus 271 ~e~l~~~~~~~l~~~~~--~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~ 345 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHTCCTT--CEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred HHHHHHHHHHhhcCCCC--CEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 34456666666654333 3899999999999999998854 456779999999999864 33 68899998866
Q ss_pred ----CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 280 ----LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 280 ----Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+++++++||+|++....... ..++..+.+ ++|++.++++
T Consensus 346 ~l~~~~~~~~~fD~Vv~dPPr~g~----~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 346 DVTKQPWAKNGFDKVLLDPARAGA----AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTCC----HHHHHHHHH-HCCSEEEEEE
T ss_pred HhhhhhhhcCCCCEEEECCCCccH----HHHHHHHHh-cCCCeEEEEE
Confidence 34567799999986644221 245555543 7899998887
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.8e-08 Score=96.88 Aligned_cols=94 Identities=17% Similarity=0.307 Sum_probs=69.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeeccccccccCCCc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c 559 (629)
.+|||+|||+|.++..|++.+. +|+.+|.++.++..+.++.-+...+.=.+.++ +| .+||+||+.+++... -
T Consensus 36 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~---~ 108 (261)
T 3ege_A 36 SVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-LPDKSVDGVISILAIHHF---S 108 (261)
T ss_dssp CEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCC-SCTTCBSEEEEESCGGGC---S
T ss_pred CEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCC-CCCCCEeEEEEcchHhhc---c
Confidence 4699999999999999998764 55666766566666555543444442223443 44 899999998887655 4
Q ss_pred CHHHHHHHHhhcccCCcEEEEEe
Q 006834 560 DITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+.+.+|.|+.|+|| ||++++.+
T Consensus 109 ~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 109 HLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred CHHHHHHHHHHHhC-CcEEEEEE
Confidence 66899999999999 99887754
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-07 Score=92.71 Aligned_cols=120 Identities=15% Similarity=0.188 Sum_probs=86.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~~~ 551 (629)
.+|||+|||.|.++..|++++-. +|+.+|.++..+..+.++ |+ +.+++ |..+....++ .+||+|-++--
T Consensus 51 ~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 51 GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 46999999999999999987432 677778776777776554 54 44444 4433333354 89999999755
Q ss_pred cccc-----------------CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 552 FSIY-----------------QDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 552 fs~~-----------------~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
|... ...++++.++.++-|+|||||.+++--..+....+...+....|...
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 4221 12356778999999999999999998777777788888888888765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=97.97 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=69.3
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cccceeecc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~Dl~H~~ 549 (629)
-.+|||+|||.|.++..|++. +. .|+.+|.++.++..+.++ |+ +..+. |. +.++ +| .+||+|.+.
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~-~~~~~fD~V~~~ 192 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM-LDTP-FDKGAVTASWNN 192 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCC-CCTTCEEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hcCC-CCCCCEeEEEEC
Confidence 346999999999999999876 43 455566666777777664 54 23333 22 2222 44 899999998
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+|... +...+|.|+.|+|||||.+++.+
T Consensus 193 ~~l~~~----~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 193 ESTMYV----DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp SCGGGS----CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CchhhC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 877654 28999999999999999999974
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=92.42 Aligned_cols=120 Identities=8% Similarity=0.071 Sum_probs=82.9
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-c--------------cceeccccccCCCCC----cc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-L--------------IGTYQDWCEAFSTYP----RT 542 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-l--------------i~~~~~~~e~f~~yp----~t 542 (629)
.|||+|||.|.++.+|++++. +|+.+|.++.++..+.++- + ..-+.-.|..+...| .+
T Consensus 25 ~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~ 101 (203)
T 1pjz_A 25 RVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGH 101 (203)
T ss_dssp EEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHS
T ss_pred EEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCC
Confidence 599999999999999998864 6777788888999998872 1 011111234455555 68
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcE-EEEE-eCH----------HHHHHHHHHHhcCCCeEEEeec
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGT-VIFR-DTV----------EMLVKIRSITEGMRWKSQIMDH 606 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~-~i~~-d~~----------~~~~~~~~~~~~l~w~~~~~~~ 606 (629)
||+|-+.++|.... ..+.+.++.||-|+|||||. +++. +.. -..+.+++++.. .|++.....
T Consensus 102 fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~ 175 (203)
T 1pjz_A 102 CAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGG 175 (203)
T ss_dssp EEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEE
T ss_pred EEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEecc
Confidence 99998877765433 23456799999999999998 3333 210 024677888777 787765443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=90.62 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=78.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceeccccccCCCCC-cccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQDWCEAFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
+|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++ |+ +.++..=.+.++ +| .+||+|.+. |..+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~--~~~~ 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD-IVADAWEGIVSI--FCHL 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS-CCTTTCSEEEEE--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC-CCcCCccEEEEE--hhcC
Confidence 799999999999999998865 677777777788877776 43 233331112222 34 799999883 3222
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------------HHHHHHHHHHhcCCCeEE
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTV-----------------EMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------------~~~~~~~~~~~~l~w~~~ 602 (629)
..-+...+|.++.|+|||||.+++.+.. -....++++++ .|++.
T Consensus 106 -~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 106 -PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp -CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEE
Confidence 2335678999999999999999998421 12566777777 67665
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.51 E-value=8e-08 Score=94.60 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=71.6
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc---cceeccccccCCCCC-cccceeecccccccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL---IGTYQDWCEAFSTYP-RTYDLIHASGVFSIY 555 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~~ 555 (629)
-.+|||+|||.|.++.+|++.+. -+|+.+|.++.++..+.++.- +...+.=.+.++ +| .+||+|.+..++...
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLH-LPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC-CCTTCEEEEEEESCGGGC
T ss_pred CCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc-CCCCCceEEEEecccccc
Confidence 34799999999999999988754 145555666678888887753 233331112233 43 899999998877654
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. +...+|.++-|+|||||.+++.+
T Consensus 121 ~---~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 121 E---DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---hHHHHHHHHHHhcCcCcEEEEEe
Confidence 3 57899999999999999999975
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-07 Score=88.71 Aligned_cols=133 Identities=17% Similarity=0.280 Sum_probs=88.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++.. .+|+.+|.++..+..+.++ |+ +.+.+ |+.+.+... ..||+|-+.+.+
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~ 110 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGSG 110 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCCT
T ss_pred CEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCch
Confidence 479999999999999998876 4566666665677776663 33 23333 332322211 489999987665
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEEEeecC---C---------CCCCCceEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQIMDHE---S---------GPFNPEKILFA 619 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e---~---------~~~~~e~~l~~ 619 (629)
. .+..+|.++.|+|+|||.+++.+. .+....+.++++...|++...+.. . ....+.-|+++
T Consensus 111 ~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 184 (192)
T 1l3i_A 111 G------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNITELNIARGRALDRGTMMVSRNPVALIYT 184 (192)
T ss_dssp T------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEEEEEEEEEEEETTEEEEEECCCEEEEEC
T ss_pred H------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEEEEEcccCeEecCceeecCCCCEEEEEE
Confidence 2 468899999999999999999764 456777778877776755433210 0 01245567778
Q ss_pred Eecc
Q 006834 620 AKTY 623 (629)
Q Consensus 620 ~K~~ 623 (629)
+|+-
T Consensus 185 ~k~~ 188 (192)
T 1l3i_A 185 GVSH 188 (192)
T ss_dssp CC--
T ss_pred eccc
Confidence 7763
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.6e-08 Score=96.34 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=70.8
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-----cceec-cccccCCCCC-cccceeecc-ccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-----IGTYQ-DWCEAFSTYP-RTYDLIHAS-GVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-----i~~~~-~~~e~f~~yp-~t~Dl~H~~-~~f 552 (629)
..|||+|||+|.++.+|++.+. -+|+.+|.++.++..+.++.- +.+++ |+.+-...+| .+||+|.++ ..+
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~ 139 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCccc
Confidence 4699999999999999988765 367778888789888887642 33333 3333223466 899999883 211
Q ss_pred c-ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 553 S-IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 553 s-~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+ ...+.-..+.+|.|+.|+|||||.+++.+.
T Consensus 140 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 140 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred chhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 1 111233345789999999999999998753
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=91.67 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=73.6
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec-cccccCCCCC-cccceeeccccccccC
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAFSTYP-RTYDLIHASGVFSIYQ 556 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~~~ 556 (629)
.-.+|||+|||.|.++.+|.+.+ .+++.+|.++.++..+.++.. ..++ |..+....++ .+||+|.+.+++....
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 34579999999999999999886 356666776677777777653 3332 3332224455 8999999988876554
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+.+.+|.++.|+|||||.+++..+
T Consensus 108 ---~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 108 ---DPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp ---CHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 458999999999999999999754
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.49 E-value=5.9e-09 Score=104.72 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=79.4
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPA 284 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd 284 (629)
.++.+.+.+...++. +|||+|||+|.++..|++++. .++++|+++.+++.|+++. .++.+..+|...+++++
T Consensus 17 ~~~~i~~~~~~~~~~--~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 17 VLNQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp THHHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence 456666776654444 899999999999999999874 5677799999999887653 35788888998888774
Q ss_pred -CCeeEEEecCccc-----------ccccCHHHHH----HHHHhcccCCcEEEEEe
Q 006834 285 -RAFDMAHCSGCLI-----------PWYMYDGLYL----LEVDRVLRPGGYWILSG 324 (629)
Q Consensus 285 -~sFDlV~~s~~L~-----------h~~~d~~~~L----~el~RvLKPGG~liis~ 324 (629)
++| .|+++..+. |+. ....++ +.+.|+|+|||.+.+..
T Consensus 92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~-~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQIIKKVVFESR-ASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSEE-EEEEECCSSSCHHHHHHHHHHCC-CEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCCc-EEEEeCCccccHHHHHHHHhCCC-CCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 677654331 111 222333 66888999998876653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=93.58 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred eeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCcccceeeccccccccC
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQ 556 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~ 556 (629)
-.+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++.- +...+.=.+.++ .+.+||+|++..+|....
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 109 (259)
T 2p35_A 34 VLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWVP 109 (259)
T ss_dssp CSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGST
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhCC
Confidence 356999999999999999765 32 33444555678888887721 223331123333 348999999988776543
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+.+.+|.++.|+|||||++++...
T Consensus 110 ---~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 110 ---DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp ---THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 568899999999999999999853
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-07 Score=90.81 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=70.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-------cceeccccccCCCCC---ccccee
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-------IGTYQDWCEAFSTYP---RTYDLI 546 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-------i~~~~~~~e~f~~yp---~t~Dl~ 546 (629)
.+|||+|||.|.++.+|++..- ..+|+.+|.++.++..+.++ |+ +..++ ..+...| .+||+|
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ---GALTYQDKRFHGYDAA 106 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE---CCTTSCCGGGCSCSEE
T ss_pred CEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe---CCcccccccCCCcCEE
Confidence 4799999999999999987631 02455566666788888776 22 22332 2233223 799999
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
.+..+|... ..-++..+|.++.|+|||||.+++++..
T Consensus 107 ~~~~~l~~~-~~~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 107 TVIEVIEHL-DLSRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp EEESCGGGC-CHHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred eeHHHHHcC-CHHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 998888755 2234578999999999999999988664
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.6e-08 Score=96.78 Aligned_cols=96 Identities=18% Similarity=0.307 Sum_probs=69.0
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+ +.....=.+.++.-+.+||+|++..++
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 46999999999999999876 33 445556655677777665 44 333331112233223899999998887
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.... +.+.+|.++.|+|||||++++.+
T Consensus 116 ~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 116 EHLQ---SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7554 45789999999999999999975
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4.2e-07 Score=94.48 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=71.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.|.+.+...++. +|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|...+++
T Consensus 36 ~~i~~~Iv~~l~~~~~~--~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 36 KNFVNKAVESANLTKDD--VVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCc
Confidence 45677788877765555 899999999999999999865 4566699999999998763 578999999999988
Q ss_pred CCCCeeEEEecCcc
Q 006834 283 PARAFDMAHCSGCL 296 (629)
Q Consensus 283 pd~sFDlV~~s~~L 296 (629)
++.+||+|+++..+
T Consensus 111 ~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 111 NKLDFNKVVANLPY 124 (295)
T ss_dssp GGSCCSEEEEECCG
T ss_pred ccCCccEEEEeCcc
Confidence 88889999988655
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4.3e-07 Score=91.70 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cce
Q 006834 456 EDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGT 528 (629)
Q Consensus 456 ~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~ 528 (629)
...+.|.+++-.-..++..+....-.+|||+|||.|..+..|+.. +- ..|+.+|.++..+.++.+. |+ +-+
T Consensus 57 ~~~~~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~ 134 (249)
T 3g89_A 57 GEEEVVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGARA 134 (249)
T ss_dssp CHHHHHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred CHHHHhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEE
Confidence 345677777655444444333233457999999999998888653 21 1345556555666666553 55 455
Q ss_pred eccccccCCC---CCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe---CHHHHHHHHHHHhcCCCeEE
Q 006834 529 YQDWCEAFST---YPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD---TVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 529 ~~~~~e~f~~---yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d---~~~~~~~~~~~~~~l~w~~~ 602 (629)
++.-.+.+.. ++.+||+|-+..+ .+++.++.++.|+|||||.+++-. ..+.+..++..++.+.++..
T Consensus 135 ~~~d~~~~~~~~~~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~ 207 (249)
T 3g89_A 135 LWGRAEVLAREAGHREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLG 207 (249)
T ss_dssp EECCHHHHTTSTTTTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEE
T ss_pred EECcHHHhhcccccCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEE
Confidence 5533333332 4479999988443 467889999999999999999864 35566777777788888765
Q ss_pred Eee-c-CCCCCCCceEEEEEecccCC
Q 006834 603 IMD-H-ESGPFNPEKILFAAKTYWTG 626 (629)
Q Consensus 603 ~~~-~-e~~~~~~e~~l~~~K~~w~~ 626 (629)
-+. - -.+....-.+++.+|.=.++
T Consensus 208 ~~~~~~~p~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 208 EVLALQLPLSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp EEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EEEEeeCCCCCCcEEEEEEEeCCCCC
Confidence 322 1 11221234566667754443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=92.55 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=69.3
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCC--cccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYP--RTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||.|.++.+|++. +. +|+.+|.++.++..+.++-- .+-+.-.+..+..+| .+||+|.+..++...
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 57999999999999999876 33 45556666678888877621 111111223344433 899999998877655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. .-....+|.|+-|+|||||.+++.+
T Consensus 123 ~-~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 123 E-DEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp C-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 2123459999999999999999986
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-07 Score=95.14 Aligned_cols=121 Identities=7% Similarity=-0.006 Sum_probs=80.8
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-----------------------------------
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----------------------------------- 524 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----------------------------------- 524 (629)
-.+|||+|||+|.++..++..+. -+|+.+|-++.+++.+.++-
T Consensus 56 g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 56 GDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 35699999999999888887775 46788888878888765420
Q ss_pred ccc-eec-cccc--cCCCC-Ccccceeecccccccc-CCCcCHHHHHHHHhhcccCCcEEEEEeCHH-------------
Q 006834 525 LIG-TYQ-DWCE--AFSTY-PRTYDLIHASGVFSIY-QDRCDITNILLEMDRILRPEGTVIFRDTVE------------- 585 (629)
Q Consensus 525 li~-~~~-~~~e--~f~~y-p~t~Dl~H~~~~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~------------- 585 (629)
-|. +++ |..+ .+... ..+||+|-+..++... .+.-++..+|.+|-|+|||||.|++++...
T Consensus 134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~ 213 (263)
T 2a14_A 134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 213 (263)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeec
Confidence 011 121 2222 12222 2689999997777642 333456679999999999999999985211
Q ss_pred ---HHHHHHHHHhcCCCeEE
Q 006834 586 ---MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 586 ---~~~~~~~~~~~l~w~~~ 602 (629)
..+.+.+++..--.++.
T Consensus 214 ~~~~~~~l~~~l~~aGF~i~ 233 (263)
T 2a14_A 214 VALEKGEVEQAVLDAGFDIE 233 (263)
T ss_dssp CCCCHHHHHHHHHHTTEEEE
T ss_pred cccCHHHHHHHHHHCCCEEE
Confidence 24567777666555544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-07 Score=97.35 Aligned_cols=98 Identities=13% Similarity=0.218 Sum_probs=67.4
Q ss_pred eeEEEeecccchhHHhh----hhC--CCeEEEEecCCCCCCCchHHHHhh-----cccceecccc----ccCC-----CC
Q 006834 480 YRNVMDMNAYLGGFAAA----MSK--YPVWVMNVVPFHSNPDTLGAIYER-----GLIGTYQDWC----EAFS-----TY 539 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~----l~~--~~v~~mnv~~~~~~~~~l~~~~er-----gli~~~~~~~----e~f~-----~y 539 (629)
-..|||+|||+|.++.. |.. .++ ...++.+|.+..++..+.++ |+-.+--.|. +.+. .+
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 44799999999986643 332 234 22446777777899988876 4322111121 2232 14
Q ss_pred C-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 540 P-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 540 p-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+ .+||+|++..++-... +.+..|.||.|+|||||.+++.
T Consensus 132 ~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 4 8999999977776554 5688999999999999999986
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-07 Score=97.17 Aligned_cols=133 Identities=12% Similarity=0.148 Sum_probs=85.4
Q ss_pred ccCCCCeeEEEeecccchhHHhhhh-C-CCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCC-ccccee
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMS-K-YPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYP-RTYDLI 546 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~-~-~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp-~t~Dl~ 546 (629)
.+.++. .|||+|||.|++++.+. + .+. .|+.+|.++.++..+.++ |+ .-+.-.+.....+| ++||+|
T Consensus 119 ~l~~g~--rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV 192 (298)
T 3fpf_A 119 RFRRGE--RAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVL 192 (298)
T ss_dssp TCCTTC--EEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEE
T ss_pred CCCCcC--EEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEE
Confidence 356654 59999999999876653 3 232 455556666788887766 76 32222334444466 899999
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHH----HHH-HHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEML----VKI-RSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~----~~~-~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
.+.++ .-+.+.++.|+-|+|||||.+++++..... ..+ ....+ .|+....-+-.+. ....|.+++|
T Consensus 193 ~~~a~------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~~-v~N~vv~a~k 263 (298)
T 3fpf_A 193 MVAAL------AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSGK-VNNTSVLVFK 263 (298)
T ss_dssp EECTT------CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCTT-CCCEEEEEEE
T ss_pred EECCC------ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCCC-cCcEEEEEEc
Confidence 86443 246789999999999999999998743210 001 11222 5666655444332 3467888888
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=89.86 Aligned_cols=98 Identities=21% Similarity=0.372 Sum_probs=70.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-----ccceec-cccccCCCCC-cccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-----LIGTYQ-DWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-----li~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++..|++.+- +++.+|.++.++..+.++- -+..++ |..+ ++ +| .+||+|.+..++.
T Consensus 40 ~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 40 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK-LS-FEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS-CC-SCTTCEEEEEEESCGG
T ss_pred CeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc-CC-CCCCcEEEEEEcCchH
Confidence 4799999999999999988754 5666676667777776652 133333 2222 22 34 7999999987744
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
... .-+...+|.++-|+|||||.+++.+..
T Consensus 115 ~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 115 HFE-PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCC-HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 332 224577999999999999999998764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.6e-07 Score=89.56 Aligned_cols=132 Identities=15% Similarity=0.175 Sum_probs=84.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cce-----ecccc-ccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGT-----YQDWC-EAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~-----~~~~~-e~f~~yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||+|+|+..|++.+. -.|+.+|.+++++..+..+.- +.. +...+ +.+.. .-||.+-++.+|+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~ 114 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI 114 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred CEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence 3699999999999999998864 256677777788888666432 111 11111 22222 0134444444454
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEe-------------------CH---HHHHHHHHHHhcCCCeEEEeecC--CC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRD-------------------TV---EMLVKIRSITEGMRWKSQIMDHE--SG 609 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-------------------~~---~~~~~~~~~~~~l~w~~~~~~~e--~~ 609 (629)
. +..+|.|+.|+|||||.+++.. +. .....+.+++....|++.-.+.. .+
T Consensus 115 ~------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g 188 (232)
T 3opn_A 115 S------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKG 188 (232)
T ss_dssp C------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCB
T ss_pred h------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCC
Confidence 3 3779999999999999999861 11 13556777788888887655432 22
Q ss_pred CC-CCceEEEEEec
Q 006834 610 PF-NPEKILFAAKT 622 (629)
Q Consensus 610 ~~-~~e~~l~~~K~ 622 (629)
+. +.|.++.++|.
T Consensus 189 ~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 189 GAGNVEFLVHLLKD 202 (232)
T ss_dssp TTTBCCEEEEEEES
T ss_pred CCCCHHHHHHHhhc
Confidence 22 46788888873
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-07 Score=94.72 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=84.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-c-------------------cceeccccccCCCCC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-L-------------------IGTYQDWCEAFSTYP 540 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-l-------------------i~~~~~~~e~f~~yp 540 (629)
..|||+|||.|.++..|++.+. +|+.+|.++.++..+.++- + -.-+.-.|..+...|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 3599999999999999999986 6788888888999887653 1 011122233444433
Q ss_pred ----cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE-EeC-----------HHHHHHHHHHHhcCCCeEEEe
Q 006834 541 ----RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF-RDT-----------VEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 541 ----~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~-----------~~~~~~~~~~~~~l~w~~~~~ 604 (629)
.+||+|-+.++|.... ..+.+.++.||-|+|||||.+++ +-. .-..+.++.++.. .|++...
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~ 224 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCL 224 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred cccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEE
Confidence 6899999877776543 34667899999999999999964 311 0124677777776 4777644
Q ss_pred e
Q 006834 605 D 605 (629)
Q Consensus 605 ~ 605 (629)
.
T Consensus 225 ~ 225 (252)
T 2gb4_A 225 E 225 (252)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-07 Score=91.67 Aligned_cols=125 Identities=17% Similarity=0.178 Sum_probs=87.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCC-cccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++.++++.+. +|+.+|.++..+..+.++ |+ +.+++ |+.+. +| ..||+|.++.++.
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~---~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA---LPFGPFDLLVANLYAE 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---GGGCCEEEEEEECCHH
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc---CcCCCCCEEEECCcHH
Confidence 3699999999999999988765 667777776788777764 44 33333 22222 43 7899999865432
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
.+..++.++-|+|||||++++++.. .....+.+.++...++..-.... +.-..|+++|
T Consensus 196 ------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~l~~~k 254 (254)
T 2nxc_A 196 ------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp ------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred ------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc----CCeEEEEEEC
Confidence 2577999999999999999997543 35677888888877877544332 1234555554
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-07 Score=90.84 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=77.7
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCC---CCcccceeeccc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFST---YPRTYDLIHASG 550 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~---yp~t~Dl~H~~~ 550 (629)
-.+|||+|||.|.++.+|++..- -.+++.+|.++.++..+.++ |+ +.+++ |+.+.+.. .+.+||+|-++-
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~np 109 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNP 109 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEECC
T ss_pred CCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEECC
Confidence 35699999999999999987610 02444455544555555443 32 22332 44442222 237899999865
Q ss_pred cccccC-------------CCcC----------HHHHHHHHhhcccCCcE-EEEEeCHHHHHHHHHHHh--cCCCeEE-E
Q 006834 551 VFSIYQ-------------DRCD----------ITNILLEMDRILRPEGT-VIFRDTVEMLVKIRSITE--GMRWKSQ-I 603 (629)
Q Consensus 551 ~fs~~~-------------~~c~----------~~~~l~e~dRiLrPgG~-~i~~d~~~~~~~~~~~~~--~l~w~~~-~ 603 (629)
-|.... .... ...++.++.|+|||||+ +++.-.......+.+++. .-.|... +
T Consensus 110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 110 PYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp CCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCE
T ss_pred CCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEE
Confidence 442111 0111 16788999999999999 777655555667777777 5566442 2
Q ss_pred eecCCCCCCCceEEEEEec
Q 006834 604 MDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 604 ~~~e~~~~~~e~~l~~~K~ 622 (629)
... ..+.+++++++|.
T Consensus 190 ~~~---~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 190 VKD---LRGIDRVIAVTRE 205 (215)
T ss_dssp EEC---TTSCEEEEEEEEC
T ss_pred EEe---cCCCEEEEEEEEc
Confidence 222 2245889998874
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-07 Score=93.50 Aligned_cols=98 Identities=9% Similarity=-0.027 Sum_probs=69.3
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--------cccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP--------RTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp--------~t~Dl~H~~~~fs 553 (629)
+|||+|||+|.++..|++..- +|+.+|.++.++..+.++--..-+.-.+..+...+ ..||+|.+..++.
T Consensus 59 ~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~ 135 (245)
T 3ggd_A 59 PLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH 135 (245)
T ss_dssp CEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSST
T ss_pred eEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchhh
Confidence 599999999999999987644 56666777678888877642111111122333322 2489999988876
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
... .-+...+|.++-|+|||||++++.+.
T Consensus 136 ~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 136 HIP-VEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp TSC-GGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 553 23568899999999999999888753
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-07 Score=96.89 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=68.0
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc---------cceec-cccccCCCCCcccceeecc-c
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL---------IGTYQ-DWCEAFSTYPRTYDLIHAS-G 550 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl---------i~~~~-~~~e~f~~yp~t~Dl~H~~-~ 550 (629)
+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++-- +.++. |.. .++ ++.+||+|.+. .
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFA-LDKRFGTVVISSG 159 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCC-CSCCEEEEEECHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCC-cCCCcCEEEECCc
Confidence 699999999999999999864 55666766678888877621 33333 222 222 36999988853 3
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
++. +.+.-++..+|.++.|+|||||.++|..
T Consensus 160 ~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 160 SIN-ELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HHT-TSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-cCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 333 2233346789999999999999999974
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-07 Score=93.90 Aligned_cols=91 Identities=13% Similarity=-0.012 Sum_probs=63.1
Q ss_pred CCeEEEeCCCC------chHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEE-EEecCCCCCCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGV------ASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMI-GVISSKRLPYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGt------G~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~-~v~d~~~Lp~pd~sFDlV~~s~~ 295 (629)
+.+|||+|||+ |. ..+++.......++++|+++. + .++.+ .++|...++++ ++||+|+++..
T Consensus 64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~ 132 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------SDADSTLIGDCATVHTA-NKWDLIISDMY 132 (290)
T ss_dssp TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------CSSSEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------CCCEEEEECccccCCcc-CcccEEEEcCC
Confidence 34899999944 76 334443221225677799987 2 24677 88998887764 68999999643
Q ss_pred ccccc-----c-----C-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 296 LIPWY-----M-----Y-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~-----~-----d-~~~~L~el~RvLKPGG~liis~P 325 (629)
. ++. . + ...++.++.|+|||||.|++...
T Consensus 133 ~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 133 D-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp C-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred c-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 2 110 0 1 24789999999999999999753
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-07 Score=87.73 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=66.9
Q ss_pred eEEEeecccchhH-HhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceeccccccCCCCC-cccceeecccccc
Q 006834 481 RNVMDMNAYLGGF-AAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQDWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggf-aa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.+ ...+...+. +|+.+|.++.++..+.++ |. +...+.=.+.++ +| .+||+|.+.+++.
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGTIF 100 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-SCTTCEEEEEECSCGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC-CCCCceeEEEEcChHH
Confidence 4699999999988 455555554 566667776777777665 32 333331112222 44 8999999977765
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.. ..-+...+|.++.|+|||||.+++.+
T Consensus 101 ~~-~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 101 HM-RKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 22456789999999999999999975
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-07 Score=97.60 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=69.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cc----------ee-cccc------ccCC-CCC-
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IG----------TY-QDWC------EAFS-TYP- 540 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~----------~~-~~~~------e~f~-~yp- 540 (629)
..|||+|||.|+....++..+. -+|+.+|.++.++..+.+|-- .+ .+ ...+ +.+. .+|
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 4699999999987776665553 357788888899999988631 11 01 1111 2221 355
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
.+||+|-|..++-..-+.-....+|.|+-|+|||||+||++...
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999988654432111124689999999999999999998654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=87.92 Aligned_cols=132 Identities=13% Similarity=0.156 Sum_probs=84.6
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC--cccceee
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP--RTYDLIH 547 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp--~t~Dl~H 547 (629)
++|||+|||.|.++.+|++. +. .|+.+|.++.++..+.++ |+ |.+.+ |..+.+...+ .+||+|.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred CEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 57999999999999999876 32 344555555677777665 65 33333 3333344444 4999998
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH------------HHHHHHH----HHhcCCCeEEEeecCCCCC
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE------------MLVKIRS----ITEGMRWKSQIMDHESGPF 611 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~------------~~~~~~~----~~~~l~w~~~~~~~e~~~~ 611 (629)
+++- .-....+|.++-|+|||||.+++.+... ....+++ +...-+|+..+...- |..
T Consensus 142 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~ 214 (248)
T 3tfw_A 142 IDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GTK 214 (248)
T ss_dssp ECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-STT
T ss_pred ECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CCC
Confidence 7542 2345678999999999999999864321 1223333 344556776654221 212
Q ss_pred CCceEEEEEec
Q 006834 612 NPEKILFAAKT 622 (629)
Q Consensus 612 ~~e~~l~~~K~ 622 (629)
..+.+.+++|+
T Consensus 215 ~~DG~~i~~~~ 225 (248)
T 3tfw_A 215 GWDGFTLAWVN 225 (248)
T ss_dssp CSEEEEEEEEC
T ss_pred CCCeeEEEEEe
Confidence 35789999885
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-07 Score=99.30 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=82.3
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh---------c-c----cceeccccccCC-----CC
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER---------G-L----IGTYQDWCEAFS-----TY 539 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er---------g-l----i~~~~~~~e~f~-----~y 539 (629)
.+|||+|||.|.++..|++. +- ..|+.+|.++.++..+.++ | + +..++.-.+.+. .+
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEH--GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTT--CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 46999999999999888764 21 1455566666788888877 5 2 333432222221 45
Q ss_pred C-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------------------HHHHHHHHHHh
Q 006834 540 P-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-----------------------EMLVKIRSITE 595 (629)
Q Consensus 540 p-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------------------~~~~~~~~~~~ 595 (629)
| .+||+|+++.++.... +...+|.|+.|+|||||++++.+.. -....+.+++.
T Consensus 163 ~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 239 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVA 239 (383)
T ss_dssp CTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHH
T ss_pred CCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHH
Confidence 5 7999999998887654 4689999999999999999997521 01266777877
Q ss_pred cCCCeE
Q 006834 596 GMRWKS 601 (629)
Q Consensus 596 ~l~w~~ 601 (629)
.-.++.
T Consensus 240 ~aGF~~ 245 (383)
T 4fsd_A 240 EAGFRD 245 (383)
T ss_dssp HTTCCC
T ss_pred HCCCce
Confidence 777754
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.4e-07 Score=90.65 Aligned_cols=134 Identities=15% Similarity=0.236 Sum_probs=88.8
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++. +- .+|+.+|.++..+.++.++ |+ +.+++ |+.+.+. +.+||+|-++--+
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 46999999999999999743 22 2556667776777777665 44 34444 4443322 4789999987333
Q ss_pred ccc------------CCC----------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE-EeecCCC
Q 006834 553 SIY------------QDR----------CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ-IMDHESG 609 (629)
Q Consensus 553 s~~------------~~~----------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~-~~~~e~~ 609 (629)
... ... -....++.++-|+|+|||++++.........++++++...|+.. +...
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d--- 263 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRD--- 263 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEEC---
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEec---
Confidence 211 111 23467899999999999999998766556677777777666532 2221
Q ss_pred CCCCceEEEEEe
Q 006834 610 PFNPEKILFAAK 621 (629)
Q Consensus 610 ~~~~e~~l~~~K 621 (629)
-.+.+++++++|
T Consensus 264 ~~g~~r~~~~~~ 275 (276)
T 2b3t_A 264 YGDNERVTLGRY 275 (276)
T ss_dssp TTSSEEEEEEEC
T ss_pred CCCCCcEEEEEE
Confidence 225688888875
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=86.25 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=58.1
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCc----hHHHHhhccccee-cccccc--CCCCCcccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDT----LGAIYERGLIGTY-QDWCEA--FSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~----l~~~~ergli~~~-~~~~e~--f~~yp~t~Dl~H~~~~fs~ 554 (629)
+|||+|||+|.++..|++.-= .-.|..+|.++.+ +..+.++.-+... .|..+. +..++.+||+|.++. .
T Consensus 60 ~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~--~- 135 (210)
T 1nt2_A 60 RVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI--A- 135 (210)
T ss_dssp EEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC--C-
T ss_pred EEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec--c-
Confidence 699999999999998876410 0135556666443 3333333222222 232221 123458999998862 1
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
..-....+|.|+.|+|||||.+++.
T Consensus 136 --~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 136 --QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp --STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1112334689999999999999997
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=7.2e-07 Score=95.41 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=69.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||+|.++..|++.+. -.|+.+|.+ +++..+.++ |+ |.+++.=.+.+ .+|..||+|.+..+..
T Consensus 65 ~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~Iv~~~~~~ 140 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI-SLPEKVDVIISEWMGY 140 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC-CCSSCEEEEEECCCBT
T ss_pred CEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc-CcCCcceEEEEcChhh
Confidence 4699999999999999988754 255566666 677666543 44 44444222222 2458999999966555
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.....-.++.++.+++|+|||||.+|+.
T Consensus 141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 141 FLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp TBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred cccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 4444456788999999999999999885
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.8e-06 Score=92.87 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=84.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-------------------------------------Ee
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-------------------------------------TM 248 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-------------------------------------~v 248 (629)
+.+...+..+....++ .+|||.+||+|.++..++..+.. ..
T Consensus 181 e~lAa~ll~~~~~~~~--~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 258 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAG--RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385)
T ss_dssp HHHHHHHHHTSCCCTT--SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHhhCCCCC--CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence 4455666666655444 48999999999999998775321 13
Q ss_pred EEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCccccccc---CHHHHHHHHHhcccC--C
Q 006834 249 SFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM---YDGLYLLEVDRVLRP--G 317 (629)
Q Consensus 249 ~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~---d~~~~L~el~RvLKP--G 317 (629)
.++|+|+++.+++.|+++ +. .+.+.+.|...++.+ .+||+|+++..+..-.. +...+..++.++||+ |
T Consensus 259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g 337 (385)
T 3ldu_A 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKN 337 (385)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCC
Confidence 578889999999999865 44 588999999888764 58999999876532221 123466777777776 8
Q ss_pred cEEEEEeC
Q 006834 318 GYWILSGP 325 (629)
Q Consensus 318 G~liis~P 325 (629)
|.+++.++
T Consensus 338 ~~~~iit~ 345 (385)
T 3ldu_A 338 WSYYLITS 345 (385)
T ss_dssp CEEEEEES
T ss_pred CEEEEEEC
Confidence 88888765
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.32 E-value=9e-07 Score=86.81 Aligned_cols=116 Identities=12% Similarity=0.163 Sum_probs=78.1
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC-CC-cccceeecccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST-YP-RTYDLIHASGV 551 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~-yp-~t~Dl~H~~~~ 551 (629)
.|||+|||.|.++.+|++. +- .+|+.+|.+..++..+.++ |+ +.+++ |..+ +.. +| .+||.|++.
T Consensus 41 ~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~-- 115 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLN-- 115 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEE--
T ss_pred eEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEE--
Confidence 5999999999999999765 22 3667778877788777664 55 34443 3322 322 44 789988763
Q ss_pred ccc-------cCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCeEE
Q 006834 552 FSI-------YQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 552 fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~ 602 (629)
|+. .+.+-..+.+|.++-|+|||||.+++. |..+....+...+....|...
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 221 112223478999999999999999986 566666666666555566543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-07 Score=96.78 Aligned_cols=100 Identities=12% Similarity=0.230 Sum_probs=69.2
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc-----------------------------------
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG----------------------------------- 524 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg----------------------------------- 524 (629)
.+|||+|||.|.++..|++. +- ..|+.+|.++.++..+.++-
T Consensus 48 ~~VLDiGCG~G~~~~~la~~~~~--~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 48 RDVLDLGCNVGHLTLSIACKWGP--SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp SEEEEESCTTCHHHHHHHHHTCC--SEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CcEEEeCCCCCHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 46999999999999999876 22 25666676666777776651
Q ss_pred -----------------------------ccceec-ccccc---C-CCCCcccceeeccccccccC---CCcCHHHHHHH
Q 006834 525 -----------------------------LIGTYQ-DWCEA---F-STYPRTYDLIHASGVFSIYQ---DRCDITNILLE 567 (629)
Q Consensus 525 -----------------------------li~~~~-~~~e~---f-~~yp~t~Dl~H~~~~fs~~~---~~c~~~~~l~e 567 (629)
-+..++ |+... + ...+.+||+|.|.+++...+ ....+..+|.+
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 122222 33211 1 12348999999977764322 44467889999
Q ss_pred HhhcccCCcEEEEEe
Q 006834 568 MDRILRPEGTVIFRD 582 (629)
Q Consensus 568 ~dRiLrPgG~~i~~d 582 (629)
+-|+|||||++||..
T Consensus 206 ~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 206 IYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHEEEEEEEEEEC
T ss_pred HHHHhCCCcEEEEec
Confidence 999999999999963
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.5e-07 Score=95.03 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=65.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
..|||+|||+|.++..|++.+. -.|..+|.+ .++..+.++ |+ |.+++.=.+.+ .+| .+||+|-+..+.
T Consensus 66 ~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 66 KVVLDVGCGTGILSMFAAKAGA--KKVLGVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEWMG 141 (340)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECCCB
T ss_pred CEEEEeeccCcHHHHHHHHcCC--CEEEEEChH-HHHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEcCch
Confidence 3699999999999999988753 244555555 366665543 44 44444222222 355 799999987653
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVI 579 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i 579 (629)
......-.++.+|.++.|+|||||.++
T Consensus 142 ~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 333344457789999999999999998
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=92.44 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-------------------------------------Ee
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-------------------------------------TM 248 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-------------------------------------~v 248 (629)
+.+...+..+....++ ..|||.+||+|.++..++..+.. ..
T Consensus 187 e~lAa~ll~l~~~~~~--~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPD--RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp HHHHHHHHHHSCCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHHhCCCCC--CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 4455566666555444 38999999999999888765332 12
Q ss_pred EEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCccccccc---CHHHHHHHHHhcccC--C
Q 006834 249 SFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM---YDGLYLLEVDRVLRP--G 317 (629)
Q Consensus 249 ~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~---d~~~~L~el~RvLKP--G 317 (629)
.++++|+++.+++.|+++ +. .+.+.+.|...++.+ .+||+|+++.-+..-.. +...+..++.++||+ |
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g 343 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT 343 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence 477889999999999865 43 488999999888765 58999999875422211 123456666666666 8
Q ss_pred cEEEEEeC
Q 006834 318 GYWILSGP 325 (629)
Q Consensus 318 G~liis~P 325 (629)
|.+++.++
T Consensus 344 ~~~~iit~ 351 (393)
T 3k0b_A 344 WSVYVLTS 351 (393)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
Confidence 88888765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-07 Score=94.05 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=70.8
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCC-CCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFST-YPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~-yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++.+. .+|+.+|.++.++..+.++ |+ +.+.+.=.+.++. -+.+||+|.+..++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 3699999999999999887653 2556666666778777765 33 3333311122222 24799999998776
Q ss_pred ccc-CCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 553 SIY-QDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 553 s~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
... .+.-+...+|.++.|+|||||.+++....
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 431 33345678999999999999999998654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=81.86 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=88.3
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceec-cccccCCCCC-cccceeeccccccccCC--
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAFSTYP-RTYDLIHASGVFSIYQD-- 557 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f~~yp-~t~Dl~H~~~~fs~~~~-- 557 (629)
.|||+|||+|.++.+|+++. +|+.+|.++.++.. ..+ +.+++ |.. ..++ .+||+|-++..|-....
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~-~~~~~~d~~---~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRG-GNLVRADLL---CSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSS-SCEEECSTT---TTBCGGGCSEEEECCCCBTTCCCT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccC-CeEEECChh---hhcccCCCCEEEECCCCccCCccc
Confidence 69999999999999999987 77888887667766 222 33333 322 3445 89999998766653221
Q ss_pred ----CcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 558 ----RCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 558 ----~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
..+...++.++-|.| |||.+++... ......+.++++...|+...+.....+ .|++++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~~~ 161 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYIIKG 161 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEEEE
Confidence 223356888888888 9999999764 345778888888889987755444333 456665543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=9.6e-07 Score=90.38 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=80.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCC--Ccccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTY--PRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~y--p~t~Dl~H~~~~fs~~ 555 (629)
+|||+|||+|+|+.+|++.+-- .|+.+|.++.++..+.++ |+-....-.+.....+ +.+||+|.++..+
T Consensus 128 ~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~--- 202 (278)
T 2frn_A 128 LVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV--- 202 (278)
T ss_dssp EEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS---
T ss_pred EEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch---
Confidence 5999999999999999876431 456667776777776654 5532121122333333 4799999885443
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH-------HHHHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTV-------EMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-------~~~~~~~~~~~~l~w~~~~~ 604 (629)
....++.++-|+|||||.+++.+.. +....+.+.++...|+..++
T Consensus 203 ----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 203 ----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred ----hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 2367888999999999999996432 45778889999999988763
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=85.29 Aligned_cols=129 Identities=12% Similarity=0.266 Sum_probs=83.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCC-CCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFS-TYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~-~yp~t~Dl~H~~~~ 551 (629)
.+|||+|||.|.++.+|++..- ...|+.+|.++.++..+.++ |+ |.+++ |..+.+. ..+.+||+|.++.
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~- 150 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA- 150 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET-
T ss_pred CEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC-
Confidence 4799999999999999988310 13455556665677766553 44 34444 3334333 3468999998753
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-----------------HHHHHHHHHH----HhcCCCeEEEeecCCCC
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFRDT-----------------VEMLVKIRSI----TEGMRWKSQIMDHESGP 610 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-----------------~~~~~~~~~~----~~~l~w~~~~~~~e~~~ 610 (629)
..-....++.++-|+|||||.+++.+. ......++++ .+.-++...+...
T Consensus 151 -----~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~---- 221 (232)
T 3ntv_A 151 -----AKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNI---- 221 (232)
T ss_dssp -----TSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECS----
T ss_pred -----cHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEc----
Confidence 234567899999999999999999321 1112333333 4445677666533
Q ss_pred CCCceEEEEEec
Q 006834 611 FNPEKILFAAKT 622 (629)
Q Consensus 611 ~~~e~~l~~~K~ 622 (629)
.+.+.+++|+
T Consensus 222 --~dG~~i~~k~ 231 (232)
T 3ntv_A 222 --DDGLAISIKG 231 (232)
T ss_dssp --TTCEEEEEEC
T ss_pred --CCceEEEEEC
Confidence 3568888884
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.9e-07 Score=86.88 Aligned_cols=127 Identities=19% Similarity=0.220 Sum_probs=81.8
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-----cccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-----RTYD 544 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-----~t~D 544 (629)
.+|||+|||.|.++.+|++. +. .|+.+|.++.++..+.++ |+ +.+++ |..+.+...+ .+||
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 36999999999999999875 32 344555555677666554 54 33333 3333333333 7899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH------------HHHHHHH----HHhcCCCeEEEeecCC
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE------------MLVKIRS----ITEGMRWKSQIMDHES 608 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~------------~~~~~~~----~~~~l~w~~~~~~~e~ 608 (629)
+|.+++. .-....++.++-|+|||||++++.|... ....+++ +...-+|+..+...
T Consensus 143 ~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-- 214 (225)
T 3tr6_A 143 LIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI-- 214 (225)
T ss_dssp EEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS--
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc--
Confidence 9986442 3346779999999999999999975421 1223333 33444677666533
Q ss_pred CCCCCceEEEEEec
Q 006834 609 GPFNPEKILFAAKT 622 (629)
Q Consensus 609 ~~~~~e~~l~~~K~ 622 (629)
...+++++|+
T Consensus 215 ----~dG~~~~~k~ 224 (225)
T 3tr6_A 215 ----GDGLTLARKK 224 (225)
T ss_dssp ----TTCEEEEEEC
T ss_pred ----CCccEEEEEC
Confidence 3568888884
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.9e-06 Score=89.49 Aligned_cols=118 Identities=10% Similarity=0.045 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-------------------------------------Ee
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-------------------------------------TM 248 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-------------------------------------~v 248 (629)
+.+...+..+....++. .+||.+||+|.++..++..+.. ..
T Consensus 180 e~LAaall~l~~~~~~~--~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDK--PFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp HHHHHHHHHHTTCCTTS--CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHHhCCCCCC--eEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 44555566665554443 8999999999999888765332 12
Q ss_pred EEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccC---HHHHHHHHHhcccC--C
Q 006834 249 SFARRDTHEAQVQFALER----GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY---DGLYLLEVDRVLRP--G 317 (629)
Q Consensus 249 ~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKP--G 317 (629)
.++++|+++.+++.|+++ +. .+.+.+.|...++.+ .+||+|+++.-+..-..+ ...+..++.+.||+ |
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g 336 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT 336 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence 478889999999999865 43 488999999888765 489999998755322212 34566677777776 9
Q ss_pred cEEEEEeCC
Q 006834 318 GYWILSGPP 326 (629)
Q Consensus 318 G~liis~P~ 326 (629)
|.+++.++.
T Consensus 337 ~~~~iit~~ 345 (384)
T 3ldg_A 337 WSQFILTND 345 (384)
T ss_dssp SEEEEEESC
T ss_pred cEEEEEECC
Confidence 988888653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.1e-07 Score=91.64 Aligned_cols=116 Identities=12% Similarity=0.020 Sum_probs=78.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhccccee-cccccc-C---CCCCcccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTY-QDWCEA-F---STYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~-~~~~e~-f---~~yp~t~Dl~H~~~~fs~~ 555 (629)
..|||+|||+|.++..|++++. .|+.+|.++.++..+.++---..+ .+|.+. + ...+.+||+|-++.++..+
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~ 123 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRF 123 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGS
T ss_pred CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhC
Confidence 4699999999999999998864 566777777899998877421111 233221 1 1234789999998877644
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH----HHHHHHHHHHhcCCCeE
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTV----EMLVKIRSITEGMRWKS 601 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----~~~~~~~~~~~~l~w~~ 601 (629)
.. -+...+|.+|-|+| |||.++++-.. .-...++.....-.|..
T Consensus 124 ~~-~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~ 171 (261)
T 3iv6_A 124 TT-EEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAK 171 (261)
T ss_dssp CH-HHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHH
T ss_pred CH-HHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeee
Confidence 32 24567999999999 99999998432 12333444444444443
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=7.4e-07 Score=87.11 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=81.5
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC----cccce
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP----RTYDL 545 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp----~t~Dl 545 (629)
.+|||+|||+|.++.+|++. +. .|+.+|..+.++..+.++ |+ +.+++ |..+.+..++ .+||+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 46999999999999999876 33 445555555667666544 55 33333 3323222222 57999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH------------HHHHHHH----HHhcCCCeEEEeecCCC
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE------------MLVKIRS----ITEGMRWKSQIMDHESG 609 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~------------~~~~~~~----~~~~l~w~~~~~~~e~~ 609 (629)
|.+++... ....+|.++-|+|||||.+++.+... ....+++ +...=+|...+...- +
T Consensus 137 v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~-~ 209 (223)
T 3duw_A 137 IFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV-G 209 (223)
T ss_dssp EEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE-E
T ss_pred EEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc-C
Confidence 98755422 45679999999999999999864321 1223333 334446666655430 1
Q ss_pred CCCCceEEEEEec
Q 006834 610 PFNPEKILFAAKT 622 (629)
Q Consensus 610 ~~~~e~~l~~~K~ 622 (629)
..+.+.+++++|+
T Consensus 210 ~~~~dG~~~~~~~ 222 (223)
T 3duw_A 210 SKGYDGFIMAVVK 222 (223)
T ss_dssp TTEEEEEEEEEEC
T ss_pred CCCCCeeEEEEEe
Confidence 1124678888764
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-06 Score=92.59 Aligned_cols=97 Identities=15% Similarity=0.346 Sum_probs=68.2
Q ss_pred CeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCC---CCCccccee
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFS---TYPRTYDLI 546 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~---~yp~t~Dl~ 546 (629)
..+.|||+|||.|.++.+|++. ++ .++-.|. +.++..+.++ |+ +.... ...|. ++|.+||++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~p~~~D~v 252 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHG--ANLLDRDVPFPTGFDAV 252 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEE--CCCCSSSCCCCCCCSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeC-HHHHHHHHHHHHhcCcccceEEEE--ccccccCCCCCCCcCEE
Confidence 4578999999999999999863 33 2333444 3677776665 54 33222 11222 378899999
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+..++..+.+. +...+|.++-|+|||||.++|.|
T Consensus 253 ~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 253 WMSQFLDCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp EEESCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEechhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 998887655432 34578999999999999999975
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-06 Score=83.84 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCC-CCC-cccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFS-TYP-RTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~-~yp-~t~Dl~H~~~~ 551 (629)
..|||+|||.|.++.+|++..- -.+|+.+|.++..+..+.++ |+ +.+++ |+.+ +. .+| .+||+|.++..
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEESC
T ss_pred CeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEECC
Confidence 3599999999999999976510 12556666666777776653 44 33443 3332 33 244 78999998632
Q ss_pred cccc-----CCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCeEEEe
Q 006834 552 FSIY-----QDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 552 fs~~-----~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~~ 604 (629)
.... ..+-..+.+|.++.|+|+|||.+++. |..+....+.+++....|.....
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeec
Confidence 1110 11123467999999999999999996 45566677777776667766533
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-07 Score=90.41 Aligned_cols=110 Identities=12% Similarity=0.194 Sum_probs=76.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceec-cccccCCCC-CcccceeeccccccccCC
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQ-DWCEAFSTY-PRTYDLIHASGVFSIYQD 557 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~-~~~e~f~~y-p~t~Dl~H~~~~fs~~~~ 557 (629)
..|||+|||.|.++.+|++.+. +|+.+|.++.++..+.++.- +.+++ |+.+.++.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 3699999999999999998854 56677777788999888832 33333 444443322 4799999884
Q ss_pred CcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 558 RCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 558 ~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
-+...+|.++.|+|||||.++..........+.+.+....+...
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence 24567899999999999999944322233445555555555443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.7e-06 Score=87.02 Aligned_cols=96 Identities=10% Similarity=0.169 Sum_probs=61.3
Q ss_pred eEEEeecccchhHHhhhhCC-C--eEEEEecCCCCCC------CchHHHHhh----cc---cceec-c-ccccCCCCC-c
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-P--VWVMNVVPFHSNP------DTLGAIYER----GL---IGTYQ-D-WCEAFSTYP-R 541 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~--v~~mnv~~~~~~~------~~l~~~~er----gl---i~~~~-~-~~e~f~~yp-~ 541 (629)
..|||+|||.|.++..|++. + .- |+.+|.++ .++..+.++ |+ +.+.+ | ....-.++| .
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~---v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGH---VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCE---EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCE---EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 46999999999999999875 2 33 33333332 267766554 33 33333 2 211112344 8
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+||+|++.+++....+ .+.++..+.++|+|||++++.+
T Consensus 122 ~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 122 HFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999888865443 3556666677777799999964
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=7.8e-07 Score=87.96 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=73.2
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCC-CC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFST-YP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~-yp-~t~Dl~H~~~ 550 (629)
..|||+|||.|.++.+|++. +- .+|+.+|.++.++..+.++ |+ +-+++ |-.+-+.. +| .+||+|.+..
T Consensus 36 ~~vLDiGcG~G~~~~~lA~~~p~--~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 36 PVTLEIGFGMGASLVAMAKDRPE--QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CeEEEEeeeChHHHHHHHHHCCC--CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 46999999999999999864 21 2556667776777776544 55 33333 22222221 44 8999998742
Q ss_pred cccccCC-----CcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhc
Q 006834 551 VFSIYQD-----RCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEG 596 (629)
Q Consensus 551 ~fs~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~ 596 (629)
.....+. |-..+.+|.++-|+|||||.+++. |.......+.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 2111111 222246999999999999999995 556666666666544
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.8e-07 Score=88.56 Aligned_cols=108 Identities=16% Similarity=0.123 Sum_probs=68.2
Q ss_pred eEEEeecccchhHHhhhhCC------C--eEEEEecCCCCCCCchHHHHhhcc---cceec-ccccc--CCCCCc-ccce
Q 006834 481 RNVMDMNAYLGGFAAAMSKY------P--VWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEA--FSTYPR-TYDL 545 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~------~--v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~--f~~yp~-t~Dl 545 (629)
.+|||+|||+|..++.|++. + |+.+-+.| .++..+. ++ |-+++ |..+. +...+. +||+
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~-----~~l~~a~--~~~~~v~~~~gD~~~~~~l~~~~~~~fD~ 155 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL-----SRCQIPA--SDMENITLHQGDCSDLTTFEHLREMAHPL 155 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC-----TTCCCCG--GGCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCCh-----HHHHHHh--ccCCceEEEECcchhHHHHHhhccCCCCE
Confidence 36999999999999998763 2 44444333 3333332 32 33333 32221 222233 7999
Q ss_pred eeccccccccCCCcCHHHHHHHHhh-cccCCcEEEEEeCH-----HHHHHHHHHHhcC--CCeE
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDR-ILRPEGTVIFRDTV-----EMLVKIRSITEGM--RWKS 601 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dR-iLrPgG~~i~~d~~-----~~~~~~~~~~~~l--~w~~ 601 (629)
|++++. + -+.+.+|.|+.| +|||||++++.|.. .....+.++++.. .++.
T Consensus 156 I~~d~~----~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 156 IFIDNA----H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp EEEESS----C--SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred EEECCc----h--HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 997554 1 267889999998 99999999997631 1123677777776 4554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.1e-07 Score=84.44 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=68.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCC-Ccccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTY-PRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~y-p~t~Dl~H~~~~f 552 (629)
.+|||+|||+|.++.++++.+. -.|+.+|.++.++..+.++ |+ +.+++ |+.+-...+ +.+||+|-++..|
T Consensus 46 ~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 46 LAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 3599999999999998777653 2455666666677776654 44 33443 322222224 4899999987665
Q ss_pred cccCCCcCHHHHHHHHhh--cccCCcEEEEEeCH
Q 006834 553 SIYQDRCDITNILLEMDR--ILRPEGTVIFRDTV 584 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dR--iLrPgG~~i~~d~~ 584 (629)
... .-+.+.++.++.| +|+|||.+++....
T Consensus 124 ~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 124 NVD--SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TSC--HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred Ccc--hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 432 1356789999998 99999999997543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=87.82 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=73.9
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----------cc--cceec-cccccCCC-CC-cccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----------GL--IGTYQ-DWCEAFST-YP-RTYD 544 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----------gl--i~~~~-~~~e~f~~-yp-~t~D 544 (629)
..|||+|||+|.++.+|++. +- .+|+.+|.+..++..+.++ |+ |.+++ |.-+.++. +| .+||
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~--~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPD--TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTT--SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 46999999999999999865 21 2566777776777766542 33 33333 22121221 44 8999
Q ss_pred eeeccccccc-------cCCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCC
Q 006834 545 LIHASGVFSI-------YQDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEGMR 598 (629)
Q Consensus 545 l~H~~~~fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~l~ 598 (629)
.|.+. |.. .+.|...+.+|.++-|+|||||.|+|. |..+....+.+.+....
T Consensus 126 ~v~~~--~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 126 KMFFL--FPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP 185 (235)
T ss_dssp EEEEE--SCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred EEEEe--CCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 98752 221 122333467999999999999999984 66666666666665554
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-07 Score=94.25 Aligned_cols=120 Identities=10% Similarity=0.068 Sum_probs=76.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc------------------ccc---------------
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG------------------LIG--------------- 527 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg------------------li~--------------- 527 (629)
.+|||+|||+|.++..+...+. -+|+.+|.++.++..+.++- +-|
T Consensus 73 ~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 73 RTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp SEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 4699999999996544443222 25667777777887665520 111
Q ss_pred ---eec-cccccCC----CCC-cccceeeccccccccCCC-cCHHHHHHHHhhcccCCcEEEEEeCH-------------
Q 006834 528 ---TYQ-DWCEAFS----TYP-RTYDLIHASGVFSIYQDR-CDITNILLEMDRILRPEGTVIFRDTV------------- 584 (629)
Q Consensus 528 ---~~~-~~~e~f~----~yp-~t~Dl~H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~d~~------------- 584 (629)
+.+ |..+..+ .+| .+||+|-+..+|...... -+...+|.|+-|+|||||++++.+..
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~ 230 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 230 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeee
Confidence 111 3322121 233 679999998777643322 35678999999999999999996311
Q ss_pred ---HHHHHHHHHHhcCCCeEE
Q 006834 585 ---EMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 585 ---~~~~~~~~~~~~l~w~~~ 602 (629)
-....+++++..-.++..
T Consensus 231 ~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 231 VVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp CCCCCHHHHHHHHHHTTEEEE
T ss_pred eccCCHHHHHHHHHHcCCeEE
Confidence 125667777777666654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-06 Score=87.73 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=89.6
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCCcccc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYPRTYD 544 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp~t~D 544 (629)
.+......+|||+|||.|.++.+|++. ++-+. ..|. +.++..+.++ |+ |.... ...|..+|..||
T Consensus 164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~-~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~p~~~D 237 (332)
T 3i53_A 164 KYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGT---VLDL-QGPASAAHRRFLDTGLSGRAQVVV--GSFFDPLPAGAG 237 (332)
T ss_dssp SSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEE---EEEC-HHHHHHHHHHHHHTTCTTTEEEEE--CCTTSCCCCSCS
T ss_pred hCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEE---EecC-HHHHHHHHHhhhhcCcCcCeEEec--CCCCCCCCCCCc
Confidence 344456688999999999999999763 33222 2244 3666666554 55 33332 122356777899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H------------HHHHHHHHHhcCCCeEE
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------E------------MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~------------~~~~~~~~~~~l~w~~~ 602 (629)
+|.+..++-.+.+. ....+|.++-|+|||||+++|.|.. + ....++++++.--++..
T Consensus 238 ~v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 238 GYVLSAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp EEEEESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred EEEEehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence 99998887655432 3467999999999999999997642 0 13456677777677654
Q ss_pred EeecCCCCCCCceEEEEEe
Q 006834 603 IMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 603 ~~~~e~~~~~~e~~l~~~K 621 (629)
-+..-. . ..|+.++|
T Consensus 317 ~~~~~~---~-~~vie~r~ 331 (332)
T 3i53_A 317 AAHPIS---Y-VSIVEMTA 331 (332)
T ss_dssp EEEECS---S-SEEEEEEE
T ss_pred EEEECC---C-cEEEEEee
Confidence 333221 1 67787776
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.7e-06 Score=87.28 Aligned_cols=85 Identities=12% Similarity=0.020 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VPAMIGVISSKRLPYP 283 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~~Lp~p 283 (629)
...++.|.+.+...+ + +|||||||+|.++..|++++.. ++++|+++.+++.++++. .++.+..+|...++++
T Consensus 33 ~~i~~~Iv~~~~~~~--~-~VLEIG~G~G~lt~~L~~~~~~---V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFT--G-PVFEVGPGLGALTRALLEAGAE---VTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCC--S-CEEEECCTTSHHHHHHHHTTCC---EEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCC--C-eEEEEeCchHHHHHHHHHcCCE---EEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh
Confidence 456777777766543 3 7999999999999999999754 566699999999999874 4688999999888876
Q ss_pred CC-CeeEEEecCcc
Q 006834 284 AR-AFDMAHCSGCL 296 (629)
Q Consensus 284 d~-sFDlV~~s~~L 296 (629)
+. .||.|+++..+
T Consensus 107 ~~~~~~~iv~NlPy 120 (271)
T 3fut_A 107 EVPQGSLLVANLPY 120 (271)
T ss_dssp GSCTTEEEEEEECS
T ss_pred hccCccEEEecCcc
Confidence 43 68999987754
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-06 Score=87.16 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=67.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.|.+.+...++. +|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|...+++
T Consensus 15 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTD--TLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCH
Confidence 45677777777665555 899999999999999999874 4567799999999998763 578999999988876
Q ss_pred CC----CCeeEEEecCcc
Q 006834 283 PA----RAFDMAHCSGCL 296 (629)
Q Consensus 283 pd----~sFDlV~~s~~L 296 (629)
++ +.|| |+++.-+
T Consensus 90 ~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp GGSCCSSCEE-EEEECCH
T ss_pred HHhccCCCeE-EEecCCc
Confidence 43 5788 6665533
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=5.6e-06 Score=76.21 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=78.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcccceec-cccccCCC-------CC-
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAFST-------YP- 540 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f~~-------yp- 540 (629)
+..+. +|||+|||.|.++.+|++. .|+.+-+.+ -.. . .. +.+.+ |+.+ ++. ++
T Consensus 20 ~~~~~--~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-----~---~~-~~~~~~d~~~-~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 20 FKPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-----I---VG-VDFLQGDFRD-ELVMKALLERVGD 86 (180)
T ss_dssp CCTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-----C---TT-EEEEESCTTS-HHHHHHHHHHHTT
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-----c---Cc-EEEEEccccc-chhhhhhhccCCC
Confidence 44443 6999999999999998764 344444444 211 1 11 22222 2221 110 44
Q ss_pred cccceeeccccccccCCC--cC------HHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEE-ee-cCCC
Q 006834 541 RTYDLIHASGVFSIYQDR--CD------ITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQI-MD-HESG 609 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~--c~------~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~-~~-~e~~ 609 (629)
.+||+|.++..+...... .. ...+|.++-|+|||||.+++.... .....+.+.+.. .|+... .. ....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSR 165 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSC
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCccc
Confidence 789999998776533221 00 157899999999999999997542 223334444433 255432 22 2233
Q ss_pred CCCCceEEEEEec
Q 006834 610 PFNPEKILFAAKT 622 (629)
Q Consensus 610 ~~~~e~~l~~~K~ 622 (629)
....|..++|++.
T Consensus 166 ~~~~~~~~~~~~~ 178 (180)
T 1ej0_A 166 ARSREVYIVATGR 178 (180)
T ss_dssp TTCCEEEEEEEEE
T ss_pred ccCceEEEEEccC
Confidence 3457888888763
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.3e-06 Score=87.79 Aligned_cols=105 Identities=7% Similarity=0.002 Sum_probs=73.0
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLP 281 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp 281 (629)
.+.+.+.+.+... +.+|||+|||+|.++..|++... .++++|+++.+++.|+++ +. ++.+..+|...+.
T Consensus 201 ~l~~~~~~~~~~~---~~~vLDl~cG~G~~~l~la~~~~---~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~ 274 (369)
T 3bt7_A 201 QMLEWALDVTKGS---KGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 274 (369)
T ss_dssp HHHHHHHHHTTTC---CSEEEEESCTTSHHHHHHGGGSS---EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH
T ss_pred HHHHHHHHHhhcC---CCEEEEccCCCCHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH
Confidence 3344555554432 34799999999999999988654 456779999999999864 33 6888888875542
Q ss_pred --CCC--------------CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 282 --YPA--------------RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 --~pd--------------~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+.. .+||+|++..... .+..++.+.|+++|.+++..
T Consensus 275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp HHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-------CCCHHHHHHHTTSSEEEEEE
T ss_pred HHHhhccccccccccccccCCCCEEEECcCcc-------ccHHHHHHHHhCCCEEEEEE
Confidence 121 3799999754321 13456777778999888875
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.20 E-value=6.9e-07 Score=84.00 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=68.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++.+|++.+. -+|+.+|.++.++..+.++ |+ +-+++ |+.+.+...+..||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 3699999999999999988754 3566777776777776653 33 23333 3333333445789999997665
Q ss_pred cccCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006834 553 SIYQDRCDITNILLEMD--RILRPEGTVIFRDTV 584 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 584 (629)
.. ...+.++.++. |+|+|||.+++....
T Consensus 111 ~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 111 AK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred Cc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 32 23466777776 999999999997554
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.4e-06 Score=90.49 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-------------------CCC-eEEEEecCCCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-------------------GVP-AMIGVISSKRLPY 282 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-------------------g~~-~~~~v~d~~~Lp~ 282 (629)
+.+|||+|||+|.++..++++.. ...++++|+++.+++.++++ +.. +.+...|...+..
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 34899999999999999998732 12467789999999999863 333 6777777655421
Q ss_pred -CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 -PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 -pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
..+.||+|++.. .. ....++..+.+.|||||+++++.
T Consensus 127 ~~~~~fD~I~lDP----~~-~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP----FG-SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC----SS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC----CC-CHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999533 11 34678999999999999888875
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.3e-06 Score=89.17 Aligned_cols=139 Identities=20% Similarity=0.193 Sum_probs=87.8
Q ss_pred CCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCCcccceee
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp~t~Dl~H 547 (629)
.....+|||+|||.|.++.+|++. ++ +++.+|. +.++..+.++ |+ +...+ ...+...|..||+|.
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~D~v~ 253 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVEL-AGPAERARRRFADAGLADRVTVAE--GDFFKPLPVTADVVL 253 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE--CCTTSCCSCCEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEe--CCCCCcCCCCCCEEE
Confidence 344568999999999999999865 33 2333444 3677766653 44 22222 122335676699999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC--H--H-----------------------HHHHHHHHHhcCCCe
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT--V--E-----------------------MLVKIRSITEGMRWK 600 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~-----------------------~~~~~~~~~~~l~w~ 600 (629)
+.+++-.+.+. ....+|.++-|+|||||+++|.|. . + ....++++++.-.++
T Consensus 254 ~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 332 (374)
T 1qzz_A 254 LSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 332 (374)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred EeccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 98887654322 224799999999999999999876 2 1 134566677777776
Q ss_pred EEEeecCCCCC--CCceEEEEEec
Q 006834 601 SQIMDHESGPF--NPEKILFAAKT 622 (629)
Q Consensus 601 ~~~~~~e~~~~--~~e~~l~~~K~ 622 (629)
..-+..-.+.. -...++.++|.
T Consensus 333 ~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 333 LASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEEEEECCSSCSSCEEEEEEEEC
T ss_pred eEEEEECCCCcccCCcEEEEEEEC
Confidence 54332222211 11278888885
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=92.52 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=69.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc---cceeccccccCCCCC-cccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL---IGTYQDWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.+|||+|||.|.++..|++.+. ..|+.+|.+ .++..+.+ .|+ |.+++.=.+.+ .+| .+||+|.+..+.
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMG 143 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCB
T ss_pred CEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEcccc
Confidence 3699999999999999988854 244555555 46655544 455 34444222333 355 899999997766
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
......-.++.+|.+++|+|||||.+|+.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 65556677899999999999999999753
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.3e-07 Score=92.17 Aligned_cols=102 Identities=14% Similarity=0.036 Sum_probs=70.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc-----------c--cceeccccccCC---CC---Cc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG-----------L--IGTYQDWCEAFS---TY---PR 541 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg-----------l--i~~~~~~~e~f~---~y---p~ 541 (629)
.+|||+|||.|.++..|.+.+. -+++.+|.++.++..+.++- . +..++.=++.++ .+ +.
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 4699999999999999987643 35666677767888877662 1 222322123332 24 25
Q ss_pred ccceeecccccccc-CCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 542 TYDLIHASGVFSIY-QDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 542 t~Dl~H~~~~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
+||+|-+..++... .+.-+...+|.++.|+|||||.++++...
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 99999986655432 23334568999999999999999998654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-06 Score=81.78 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=83.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc--ccceeccccccCCC--CC-cccceeecc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG--LIGTYQDWCEAFST--YP-RTYDLIHAS 549 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg--li~~~~~~~e~f~~--yp-~t~Dl~H~~ 549 (629)
+++|. .|||+|||. +.+|.++.++..+.+|- -+...+.=.+.++. +| .+||+|.+.
T Consensus 10 ~~~g~--~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 10 ISAGQ--FVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp CCTTS--EEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCC--EEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence 45554 599999985 12555667888887773 13333311233433 34 899999997
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCCeEEEeecCCCCCC-------
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE----------MLVKIRSITEGMRWKSQIMDHESGPFN------- 612 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~l~w~~~~~~~e~~~~~------- 612 (629)
.++... ..+.+.+|.|+-|+|||||++++.++.. ....+.+.++.-.+ +.+.+....+..
T Consensus 71 ~~l~~~--~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~ 147 (176)
T 2ld4_A 71 LVPGST--TLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSV 147 (176)
T ss_dssp CSTTCC--CCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHH
T ss_pred Chhhhc--ccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHH
Confidence 666543 1345899999999999999999975421 14566666665555 443332211111
Q ss_pred -----------CceEEEEEecccCCCC
Q 006834 613 -----------PEKILFAAKTYWTGAS 628 (629)
Q Consensus 613 -----------~e~~l~~~K~~w~~~~ 628 (629)
.--+++++|+-|..++
T Consensus 148 ~~~~g~~~~~~~~~~~~a~Kp~~~~gs 174 (176)
T 2ld4_A 148 REHLGHESDNLLFVQITGKKPNFEVGS 174 (176)
T ss_dssp HHHTCCCCSSEEEEEEEEECCCSSCCS
T ss_pred HHHhcccCCceEEEEEeccCCcccccC
Confidence 1458899999887664
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=91.36 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=67.6
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCC-cccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
+|||+|||.|.++..+++.+. -.|+.+|.+ .++..+.++ |+ |.+++.-.+.+ .+| ..||+|.+..+..
T Consensus 41 ~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 41 IVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWMGY 116 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCCBT
T ss_pred EEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCchh
Confidence 699999999999999988753 244555555 466655543 55 44444222222 245 7999999976655
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
.....-.++.+|.+++|+|||||.+++
T Consensus 117 ~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 555556788999999999999999984
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-06 Score=95.94 Aligned_cols=119 Identities=13% Similarity=0.063 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC---C--------------cEeEEEeecCcHHHHHHHHHc--
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD---I--------------LTMSFARRDTHEAQVQFALER-- 266 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g---~--------------~~v~i~gvDiS~~~i~~A~er-- 266 (629)
...++.+.+++....+ .+|||.+||+|.|+..+++.. . ....++|+|+++.+++.|+.+
T Consensus 155 ~~iv~~mv~~l~p~~~--~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~ 232 (541)
T 2ar0_A 155 RPLIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 232 (541)
T ss_dssp HHHHHHHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC--CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence 4456667777655444 389999999999988877541 0 112578889999999999864
Q ss_pred --CCC------eEEEEecCCCCC-CCCCCeeEEEecCccccccc------------C-HHHHHHHHHhcccCCcEEEEEe
Q 006834 267 --GVP------AMIGVISSKRLP-YPARAFDMAHCSGCLIPWYM------------Y-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 267 --g~~------~~~~v~d~~~Lp-~pd~sFDlV~~s~~L~h~~~------------d-~~~~L~el~RvLKPGG~liis~ 324 (629)
+.. ..+..+|....+ ...+.||+|+++..+..... + ...++..+.+.|+|||++.+..
T Consensus 233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 433 567777765543 34578999999876643221 1 2368999999999999999997
Q ss_pred CC
Q 006834 325 PP 326 (629)
Q Consensus 325 P~ 326 (629)
|.
T Consensus 313 p~ 314 (541)
T 2ar0_A 313 PD 314 (541)
T ss_dssp EH
T ss_pred cC
Confidence 63
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.16 E-value=7.6e-07 Score=87.33 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=81.9
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-----cccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-----RTYD 544 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-----~t~D 544 (629)
++|||+|||.|.++.+|++. +. .|+.+|.++.++..+.++ |+ |.+++ |..+.+..++ .+||
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 57999999999999999873 32 344555555677776653 55 34443 4434444555 6899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH--HHHHHHHHHhcCCCeEEEeec-CCCCCCCceEEEEEe
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE--MLVKIRSITEGMRWKSQIMDH-ESGPFNPEKILFAAK 621 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~--~~~~~~~~~~~l~w~~~~~~~-e~~~~~~e~~l~~~K 621 (629)
+|.+++....+. ....++.++ |+|||||.+++.|-.. .-.-++.+.+.=+++..++.. .......+.+.++++
T Consensus 137 ~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~ 212 (221)
T 3u81_A 137 MVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIY 212 (221)
T ss_dssp EEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEE
Confidence 998876554432 123466677 9999999999975431 111222233344566655431 111113567888876
Q ss_pred c
Q 006834 622 T 622 (629)
Q Consensus 622 ~ 622 (629)
.
T Consensus 213 ~ 213 (221)
T 3u81_A 213 Q 213 (221)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.16 E-value=8e-06 Score=85.60 Aligned_cols=143 Identities=10% Similarity=0.122 Sum_probs=90.3
Q ss_pred HhhcccCCCC-eeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCC
Q 006834 470 KIDGLFHKGR-YRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFST 538 (629)
Q Consensus 470 ~~~~~~~~~~-~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~ 538 (629)
.++..+.... .++|||+|||.|.++.+|++. ++-+. -.|.+ .++..+.++ |+ |.... |..+.-..
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 244 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQ---IWDLP-TTRDAARKTIHAHDLGGRVEFFEKNLLDARNF 244 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEE---EEECG-GGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEE---EEECH-HHHHHHHHHHHhcCCCCceEEEeCCcccCccc
Confidence 3444344434 678999999999999999764 33222 22443 566655543 55 22222 22221111
Q ss_pred CCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H-----------------HHHHHH
Q 006834 539 YPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------E-----------------MLVKIR 591 (629)
Q Consensus 539 yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~-----------------~~~~~~ 591 (629)
.|..||+|.+.+++..+.+ -....+|.++-|+|||||.++|.|.. . ....++
T Consensus 245 ~~~~~D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 323 (352)
T 3mcz_A 245 EGGAADVVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIA 323 (352)
T ss_dssp TTCCEEEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHH
T ss_pred CCCCccEEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHH
Confidence 5678999999888876533 23578999999999999999997521 0 033456
Q ss_pred HHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 592 SITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 592 ~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
++++.-.++..-.. .++..+++++|+
T Consensus 324 ~ll~~aGf~~~~~~-----~g~~~l~~a~kp 349 (352)
T 3mcz_A 324 GVVRDAGLAVGERS-----IGRYTLLIGQRS 349 (352)
T ss_dssp HHHHHTTCEEEEEE-----ETTEEEEEEECC
T ss_pred HHHHHCCCceeeec-----cCceEEEEEecC
Confidence 66666667654421 245789999986
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.15 E-value=5e-06 Score=79.59 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=74.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC------CeEEEEecCCCCCCCchHHHHhhcccceec-cccccCC----------
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY------PVWVMNVVPFHSNPDTLGAIYERGLIGTYQ-DWCEAFS---------- 537 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~------~v~~mnv~~~~~~~~~l~~~~ergli~~~~-~~~e~f~---------- 537 (629)
+.++ .+|||+|||.|+++.+|+++ .|+.+-+.|... ..++ ...+ |+.+ ..
T Consensus 20 ~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~---------~~~v-~~~~~d~~~-~~~~~~~~~~~i 86 (201)
T 2plw_A 20 LKKN--KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP---------IPNV-YFIQGEIGK-DNMNNIKNINYI 86 (201)
T ss_dssp CCTT--EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC---------CTTC-EEEECCTTT-TSSCCC------
T ss_pred CCCC--CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC---------CCCc-eEEEccccc-hhhhhhcccccc
Confidence 4444 46999999999999999764 245555444211 0122 2222 2221 11
Q ss_pred --------------CCC-cccceeeccccccccCCC-cC-------HHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHH
Q 006834 538 --------------TYP-RTYDLIHASGVFSIYQDR-CD-------ITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSI 593 (629)
Q Consensus 538 --------------~yp-~t~Dl~H~~~~fs~~~~~-c~-------~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~ 593 (629)
.++ .+||+|.+++.+...... -+ ...+|.++-|+|||||.+++.... +....+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~ 166 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTY 166 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHH
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHH
Confidence 034 689999987765431100 01 124788999999999999995322 223344444
Q ss_pred HhcCCCeEEEeec-CCCCCCCceEEEEEe
Q 006834 594 TEGMRWKSQIMDH-ESGPFNPEKILFAAK 621 (629)
Q Consensus 594 ~~~l~w~~~~~~~-e~~~~~~e~~l~~~K 621 (629)
+...-.++.++.. ...+...|..+||++
T Consensus 167 l~~~f~~v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 167 LKGMFQLVHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp HHTTEEEEEECCCC-----CCEEEEEEEE
T ss_pred HHHHHheEEEECCcccCCcCceEEEEEec
Confidence 4443223333322 223345789999987
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-06 Score=86.56 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=57.3
Q ss_pred eEEEeecccchhHHhhhhC--CCeEEEEecCCCCC-CCchHHH---H----hhccc--ceeccccccCCCCC----cccc
Q 006834 481 RNVMDMNAYLGGFAAAMSK--YPVWVMNVVPFHSN-PDTLGAI---Y----ERGLI--GTYQDWCEAFSTYP----RTYD 544 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~--~~v~~mnv~~~~~~-~~~l~~~---~----ergli--~~~~~~~e~f~~yp----~t~D 544 (629)
..|||+|||.|.++.+|++ .+. +|+.+|.+ +.+++.+ . ++|+- ...+ .....+| ..+|
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~---~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~---~d~~~l~~~~~d~v~ 99 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNT---FYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVI---AAAESLPFELKNIAD 99 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTE---EEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEEC---CBTTBCCGGGTTCEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEE---cCHHHhhhhccCeEE
Confidence 4699999999999999983 343 55666766 4566665 3 34552 2222 3333445 3344
Q ss_pred eeeccccccc--cCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 545 LIHASGVFSI--YQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 545 l~H~~~~fs~--~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
.+++.-.+.. ...+-+...+|.|+-|+|||||.++|
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4443211110 11112335689999999999999999
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.7e-06 Score=81.51 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=63.3
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H~~ 549 (629)
++|||+|||.|.++.+|++. +. .|+.+|.++.++..+.++ |+ +.+++ |..+.+...+. ||+|.++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 46999999999999999865 22 334445555666666543 54 33333 33333344557 9998875
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
. ...+...++.++-|+|||||.+++.+
T Consensus 134 ~------~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 C------DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T------TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C------ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 23467889999999999999999854
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.4e-06 Score=83.79 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=74.2
Q ss_pred CCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH---cCCCeEEEEecC
Q 006834 201 FPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE---RGVPAMIGVISS 277 (629)
Q Consensus 201 f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e---rg~~~~~~v~d~ 277 (629)
|..++.+.+.++.+.....++. +|||+|||.|.|+.+++++.. +..+.++|++..+...... .+.++.....+.
T Consensus 55 YrSRaA~KL~ei~ek~~l~~~~--~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~ 131 (277)
T 3evf_A 55 AVSRGTAKLRWFHERGYVKLEG--RVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKT 131 (277)
T ss_dssp CSSTHHHHHHHHHHTTSSCCCE--EEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSC
T ss_pred ccccHHHHHHHHHHhCCCCCCC--EEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccccCcCCCCeEEEeccc
Confidence 4555555555666654344443 899999999999999887632 2244555665322100100 112344445554
Q ss_pred CCCCCCCCCeeEEEecCccc---ccccCHH--HHHHHHHhcccCC-cEEEEEe
Q 006834 278 KRLPYPARAFDMAHCSGCLI---PWYMYDG--LYLLEVDRVLRPG-GYWILSG 324 (629)
Q Consensus 278 ~~Lp~pd~sFDlV~~s~~L~---h~~~d~~--~~L~el~RvLKPG-G~liis~ 324 (629)
....++.+.||+|+|..+.. ++.+... .+|..+.++|+|| |.|++-.
T Consensus 132 dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV 184 (277)
T 3evf_A 132 DIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV 184 (277)
T ss_dssp CTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred eehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 55567788999999976542 2331211 3568889999999 9999975
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.6e-06 Score=82.98 Aligned_cols=129 Identities=12% Similarity=0.168 Sum_probs=79.7
Q ss_pred eEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCCC-----Cccccee
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFSTY-----PRTYDLI 546 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~y-----p~t~Dl~ 546 (629)
++|||+|||+|..+.+|++. .|+.+-+.|.-.. ...+.+.+.|+ |.+++ |..+.+..+ +.+||+|
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~-~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTK-HAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCC-CSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 47999999999999999763 3555555554333 33444445566 33443 222323333 4789999
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHHHH----hcCCCeEEEeecCCCC
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------------EMLVKIRSIT----EGMRWKSQIMDHESGP 610 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~~~----~~l~w~~~~~~~e~~~ 610 (629)
.+++. .-....+|.++-|+|||||.+++.|.. .....++++. +.=++++.+...
T Consensus 141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~---- 210 (242)
T 3r3h_A 141 FIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI---- 210 (242)
T ss_dssp EEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS----
T ss_pred EEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc----
Confidence 87543 234566899999999999999995332 1122344433 334566655533
Q ss_pred CCCceEEEEEec
Q 006834 611 FNPEKILFAAKT 622 (629)
Q Consensus 611 ~~~e~~l~~~K~ 622 (629)
.+.+++++|+
T Consensus 211 --~dG~~~~~k~ 220 (242)
T 3r3h_A 211 --ADGMFLVQPI 220 (242)
T ss_dssp --SSCEEEEEEC
T ss_pred --cCceEEEEEc
Confidence 3568888873
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-06 Score=84.96 Aligned_cols=98 Identities=8% Similarity=0.075 Sum_probs=68.8
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc----cceec-cccccCCCC-Ccc-cceeeccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL----IGTYQ-DWCEAFSTY-PRT-YDLIHASG 550 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl----i~~~~-~~~e~f~~y-p~t-~Dl~H~~~ 550 (629)
.|||+|||+|.++..++.++. -.|+.+|.++.++..+.++ |+ +.+++ |..+..... +.+ ||+|-++.
T Consensus 56 ~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp EEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 599999999999998766653 3566777777788877664 33 33333 222222233 378 99999877
Q ss_pred cccccCCCcCHHHHHHHH--hhcccCCcEEEEEeCHH
Q 006834 551 VFSIYQDRCDITNILLEM--DRILRPEGTVIFRDTVE 585 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~~ 585 (629)
.|. .-..+.++.++ -|+|||||.+++.....
T Consensus 134 ~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 134 PFH----FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCC----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 754 23567788888 78999999999976553
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=86.66 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=73.1
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-C--eEEEEecCCCCC--CCCCCeeEEEecC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-P--AMIGVISSKRLP--YPARAFDMAHCSG 294 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~--~~~~v~d~~~Lp--~pd~sFDlV~~s~ 294 (629)
.+|||++||+|.++..++.+...+..++++|+++.+++.++++ +. + +.+..+|+..+. ...+.||+|++..
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP 133 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP 133 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC
Confidence 4899999999999999998532223567889999999999864 43 2 778777764431 1246799999865
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+. ....++..+.+.|+|||+++++.
T Consensus 134 ----~g-~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 134 ----FG-TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ----SS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----Cc-CHHHHHHHHHHHhCCCCEEEEEe
Confidence 11 34568999999999999888876
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=84.04 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=63.7
Q ss_pred CCeEEEeCCCCchHHHHHHHc------------C--CcEeEEEeecCcHHHHHHHHH-----------------cCCCeE
Q 006834 223 IRTAVDTGCGVASWGAYLLKR------------D--ILTMSFARRDTHEAQVQFALE-----------------RGVPAM 271 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~------------g--~~~v~i~gvDiS~~~i~~A~e-----------------rg~~~~ 271 (629)
..+|+|+|||+|..+..+... + ...+.+...|+-.......-+ .+.+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999988887332 1 123445555554433211100 000111
Q ss_pred EE--Eec-CCCCCCCCCCeeEEEecCcccccccC-H-------------------------------------HHHHHHH
Q 006834 272 IG--VIS-SKRLPYPARAFDMAHCSGCLIPWYMY-D-------------------------------------GLYLLEV 310 (629)
Q Consensus 272 ~~--v~d-~~~Lp~pd~sFDlV~~s~~L~h~~~d-~-------------------------------------~~~L~el 310 (629)
|. +.. ...-.||+++||+|+++.+| ||..+ + ..+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222 22234789999999999999 77643 2 2368888
Q ss_pred HhcccCCcEEEEEeC
Q 006834 311 DRVLRPGGYWILSGP 325 (629)
Q Consensus 311 ~RvLKPGG~liis~P 325 (629)
.+.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999864
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=84.02 Aligned_cols=111 Identities=9% Similarity=-0.104 Sum_probs=74.3
Q ss_pred hhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCC---C
Q 006834 214 ELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPA---R 285 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd---~ 285 (629)
.++...++. +|||+|||+|..+..|++.......++++|+++.+++.++++ +. ++.+...|...++... +
T Consensus 96 ~~l~~~~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 96 MLLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp HHHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGT
T ss_pred HHhCCCCCC--EEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccC
Confidence 344444444 899999999999999998521112467779999999998865 43 5788888887765432 5
Q ss_pred CeeEEEec------Ccccc-----c----c-cCH-------HHHHHHHHhcccCCcEEEEEeCCC
Q 006834 286 AFDMAHCS------GCLIP-----W----Y-MYD-------GLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 286 sFDlV~~s------~~L~h-----~----~-~d~-------~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+||.|++. .++.. | . .+. ..+|..+.++|+ ||+++.++...
T Consensus 174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 79999962 11111 1 1 111 246778888887 99999886533
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-06 Score=86.27 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=72.6
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh------------cc--cceec-cccccCCC-CC-ccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER------------GL--IGTYQ-DWCEAFST-YP-RTY 543 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er------------gl--i~~~~-~~~e~f~~-yp-~t~ 543 (629)
..|||+|||+|+|+.+|++..- -.+|+.+|.+...+..+.++ |+ +.+++ |..+.+.. ++ .++
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 4699999999999999986521 12556666665677766553 65 33333 22222221 44 778
Q ss_pred ceeecccccccc-------CCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCCC
Q 006834 544 DLIHASGVFSIY-------QDRCDITNILLEMDRILRPEGTVIF-RDTVEMLVKIRSITEGMRW 599 (629)
Q Consensus 544 Dl~H~~~~fs~~-------~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~l~w 599 (629)
|.|.. .|..- ..+-..+.+|.++.|+|+|||.+++ +|..+..+.+.+.+....+
T Consensus 130 d~v~~--~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 130 SKMFF--CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEE--ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred CEEEE--ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 87653 12211 1122236899999999999999998 5766666666665555444
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=81.76 Aligned_cols=120 Identities=9% Similarity=0.080 Sum_probs=78.9
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh-------cc---cceec-cccccCC-----CCC-cc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER-------GL---IGTYQ-DWCEAFS-----TYP-RT 542 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er-------gl---i~~~~-~~~e~f~-----~yp-~t 542 (629)
-.+|||+|||.|.++..|+++.- ..+|..+|.++..+..+.++ |+ +.+++ |..+... .++ .+
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 34799999999999998877620 13566666665677766553 33 33444 2222111 233 78
Q ss_pred cceeeccccccc---------------cCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeE
Q 006834 543 YDLIHASGVFSI---------------YQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKS 601 (629)
Q Consensus 543 ~Dl~H~~~~fs~---------------~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~ 601 (629)
||+|-++--|.. ....+.++.++.++-|+|||||.+++--..+....+...++.- |..
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 999999744322 1234678899999999999999999977776667777776663 653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.2e-06 Score=87.09 Aligned_cols=134 Identities=12% Similarity=0.156 Sum_probs=86.7
Q ss_pred CCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccce
Q 006834 476 HKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDL 545 (629)
Q Consensus 476 ~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl 545 (629)
.... .+|||+|||.|.++.+|++. +. .++.+|. +.++..+.++ |+ +.... |. +..+|..||+
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~ 236 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEPSA---RGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM---LQEVPSNGDI 236 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCTTC---EEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT---TTCCCSSCSE
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC---CCCCCCCCCE
Confidence 3344 78999999999999999764 32 2333444 3566666554 33 33332 33 3357788999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-------------H------------HHHHHHHHHhcCCCe
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-------------E------------MLVKIRSITEGMRWK 600 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-------------~------------~~~~~~~~~~~l~w~ 600 (629)
|.+..++..+.+. ....+|.++-|+|||||+++|.|.. + ....++++++.-.++
T Consensus 237 v~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 315 (334)
T 2ip2_A 237 YLLSRIIGDLDEA-ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFA 315 (334)
T ss_dssp EEEESCGGGCCHH-HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred EEEchhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCc
Confidence 9998887655432 3358999999999999999997531 0 134456666666666
Q ss_pred EEEeecCCCCCCCceEEEEEe
Q 006834 601 SQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 601 ~~~~~~e~~~~~~e~~l~~~K 621 (629)
..-+..-. ....|+.++|
T Consensus 316 ~~~~~~~~---~~~~~i~~~~ 333 (334)
T 2ip2_A 316 VERIVDLP---METRMIVAAR 333 (334)
T ss_dssp EEEEEEET---TTEEEEEEEE
T ss_pred eeEEEECC---CCCEEEEEEe
Confidence 54322211 2467888887
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.1e-07 Score=98.04 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=84.9
Q ss_pred hhchhhHHH-HHHHHHHHHHhhcccCCCCeeEEEeeccc------chhHHhhhhCC---CeEEEEecCCCCCCCchHHHH
Q 006834 452 EKLREDNEL-WKDRMTYYKKIDGLFHKGRYRNVMDMNAY------LGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIY 521 (629)
Q Consensus 452 ~~f~~d~~~-w~~~v~~y~~~~~~~~~~~~R~vlD~~~g------~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~ 521 (629)
+.|..|... |..-...|.+++..+... -.+|||+||| +||....|+++ +. .|+.+|.++.+. .
T Consensus 189 ~~Y~tDK~~~~h~y~~~Ye~lL~~l~~~-~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a---~V~GVDiSp~m~---~ 261 (419)
T 3sso_A 189 SRYFTPKFGFLHWFTPHYDRHFRDYRNQ-QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG---QIYGLDIMDKSH---V 261 (419)
T ss_dssp HHTTCTTBSSSCBCHHHHHHHHGGGTTS-CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC---EEEEEESSCCGG---G
T ss_pred HHhCCCcccccchHHHHHHHHHHhhcCC-CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHh---h
Confidence 444444333 333356688877655433 3679999999 78887777653 22 334444443442 1
Q ss_pred hhcccceeccccccCCCC------CcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------
Q 006834 522 ERGLIGTYQDWCEAFSTY------PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------- 584 (629)
Q Consensus 522 ergli~~~~~~~e~f~~y------p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------- 584 (629)
...-|.++..=++.++.- +.+||+|.+++.. .-.+....|.|+-|+|||||.++|.|-.
T Consensus 262 ~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgsH----~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~ 337 (419)
T 3sso_A 262 DELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSH----INAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQA 337 (419)
T ss_dssp CBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSCC----CHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCS
T ss_pred cCCCcEEEEecccccchhhhhhcccCCccEEEECCcc----cchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCc
Confidence 111133333111222111 3789999986542 1234577999999999999999997532
Q ss_pred -------HHHHHHHHHHhcCCCeE
Q 006834 585 -------EMLVKIRSITEGMRWKS 601 (629)
Q Consensus 585 -------~~~~~~~~~~~~l~w~~ 601 (629)
.++..++++++.++|.-
T Consensus 338 ~~~~~~~tii~~lk~l~D~l~~~~ 361 (419)
T 3sso_A 338 DPQECSGTSLGLLKSLIDAIQHQE 361 (419)
T ss_dssp STTCCTTSHHHHHHHHHHHHTGGG
T ss_pred cCCcchhHHHHHHHHHHHHhcccc
Confidence 35888899999888764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=78.46 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=73.0
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cccceec-cccc--cCCCCCcccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQ-DWCE--AFSTYPRTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gli~~~~-~~~e--~f~~yp~t~Dl~H~~~ 550 (629)
.+|||+|||.|.++.+|++. .- .|..+|.++.++..+.++ .-+..++ |..+ .+...+.+||+|-++.
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 36999999999999999754 12 233334444444444332 1123332 3322 1123457899988743
Q ss_pred cccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------H--HHHHHHHHHhcCCCeEE-EeecCCCCC-CCceEE
Q 006834 551 VFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV---------E--MLVKIRSITEGMRWKSQ-IMDHESGPF-NPEKIL 617 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------~--~~~~~~~~~~~l~w~~~-~~~~e~~~~-~~e~~l 617 (629)
. ..-....+|.++.|+|||||++++.-.. . ....++.+ ..- ++.. ..+.. +. ...-++
T Consensus 152 ~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~--~~~~~~~~~ 222 (227)
T 1g8a_A 152 A-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLE--PYEKDHALF 222 (227)
T ss_dssp C-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECT--TTSSSEEEE
T ss_pred C-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccC--cccCCCEEE
Confidence 3 1112234599999999999999995211 1 12456666 333 7654 23332 22 234567
Q ss_pred EEEec
Q 006834 618 FAAKT 622 (629)
Q Consensus 618 ~~~K~ 622 (629)
+++|+
T Consensus 223 ~~~~~ 227 (227)
T 1g8a_A 223 VVRKT 227 (227)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 77764
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.08 E-value=7.2e-07 Score=82.72 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=65.6
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cccccCCCCC---cccceeeccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DWCEAFSTYP---RTYDLIHASGVF 552 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~~e~f~~yp---~t~Dl~H~~~~f 552 (629)
+|||+|||.|.++.+|++.+.- |+.+|.++.++..+.++ |+ +.+++ |+.+.....+ .+||+|.++..|
T Consensus 44 ~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~ 120 (171)
T 1ws6_A 44 RFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred eEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence 6999999999999999887542 67777776777766653 33 23333 3322222222 379999998877
Q ss_pred cccCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006834 553 SIYQDRCDITNILLEMD--RILRPEGTVIFRDTV 584 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 584 (629)
. ...+.++.++- |+|||||.+++....
T Consensus 121 ~-----~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 121 A-----MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp T-----SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred c-----hhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 6 23456666666 999999999997544
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.9e-06 Score=87.76 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=67.6
Q ss_pred CCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCC--CCCcccc
Q 006834 476 HKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFS--TYPRTYD 544 (629)
Q Consensus 476 ~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~--~yp~t~D 544 (629)
......+|||+|||.|.++.+|+++ ++ +++.+|. +.++..+.++ |+ +.... ..+. .+|. +|
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~-~D 258 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNL-PGAIDLVNENAAEKGVADRMRGIA---VDIYKESYPE-AD 258 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEE---CCTTTSCCCC-CS
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCC---eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEe---CccccCCCCC-CC
Confidence 3444568999999999999999865 33 2333355 4677777665 65 33332 2232 2343 49
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
++.+..++..+.+ -....+|.++-|+|||||.++|.|
T Consensus 259 ~v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 259 AVLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999888766543 235779999999999999999876
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-05 Score=86.44 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCeEEEeCCCCchHHHHHHHc----------------CCcEeEEEeecCc-----------HHHHHHHHHc-C--CCeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKR----------------DILTMSFARRDTH-----------EAQVQFALER-G--VPAMI 272 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~----------------g~~~v~i~gvDiS-----------~~~i~~A~er-g--~~~~~ 272 (629)
.-+|+|+||++|..+..+... ....+.+...|+- +.+.+.+++. + .+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 458999999999988887765 0124566677876 5555544332 2 23345
Q ss_pred EEecCC---CCCCCCCCeeEEEecCcccccccCHH---------------------------------------HHHHHH
Q 006834 273 GVISSK---RLPYPARAFDMAHCSGCLIPWYMYDG---------------------------------------LYLLEV 310 (629)
Q Consensus 273 ~v~d~~---~Lp~pd~sFDlV~~s~~L~h~~~d~~---------------------------------------~~L~el 310 (629)
..+... .-.||+++||+|+++.+| ||..+.. .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 544432 345889999999999999 7864421 126666
Q ss_pred HhcccCCcEEEEEeCC
Q 006834 311 DRVLRPGGYWILSGPP 326 (629)
Q Consensus 311 ~RvLKPGG~liis~P~ 326 (629)
.+.|+|||.++++...
T Consensus 212 a~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 212 SEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHEEEEEEEEEEEEC
T ss_pred HHHhccCCeEEEEEec
Confidence 8999999999998653
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=5.7e-06 Score=80.96 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=80.7
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-----cccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-----RTYD 544 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-----~t~D 544 (629)
.+|||+|||.|.++.+|++. +. +|+.+|.++..+..+.++ |+ +.+++ |..+.+...+ .+||
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 47999999999999999874 22 344445555677766654 55 33333 2222222222 6899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHH----HHHhcCCCeEEEeecCC
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------------EMLVKIR----SITEGMRWKSQIMDHES 608 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~----~~~~~l~w~~~~~~~e~ 608 (629)
+|.++.. ......++.++-|+|||||.+++.+.. .....++ .+...=++++.+...
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-- 219 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL-- 219 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS--
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec--
Confidence 9988543 345678999999999999999995321 1222333 334455677766644
Q ss_pred CCCCCceEEEEEec
Q 006834 609 GPFNPEKILFAAKT 622 (629)
Q Consensus 609 ~~~~~e~~l~~~K~ 622 (629)
.+.+++++|.
T Consensus 220 ----~dGl~~~~k~ 229 (229)
T 2avd_A 220 ----GDGLTLAFKI 229 (229)
T ss_dssp ----TTCEEEEEEC
T ss_pred ----CCceEEEEEC
Confidence 3568888873
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.8e-06 Score=85.77 Aligned_cols=135 Identities=18% Similarity=0.232 Sum_probs=88.3
Q ss_pred CCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceee
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
....+|||+|||.|.++.+|++. +. .++.+|.+ ..++.+.++ |+ +...+ |..+ ..+|..||+|.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFE--VDYGNDYDLVL 237 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT--SCCCSCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccccc--CCCCCCCcEEE
Confidence 34467999999999999999865 33 44555665 677766654 44 33332 2221 14566699999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH---------------------------HHHHHHHHHhcCCCe
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE---------------------------MLVKIRSITEGMRWK 600 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~---------------------------~~~~~~~~~~~l~w~ 600 (629)
+..++..+.. -+...+|.++-|+|||||+++|.|... ....++++++.-.++
T Consensus 238 ~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~ 316 (335)
T 2r3s_A 238 LPNFLHHFDV-ATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFS 316 (335)
T ss_dssp EESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCS
T ss_pred EcchhccCCH-HHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCC
Confidence 9887765532 234689999999999999999975310 045667777777777
Q ss_pred EEEeecCCCCCCCceEEEEEec
Q 006834 601 SQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 601 ~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
..-+..-.+ +..+++++++
T Consensus 317 ~~~~~~~~~---~~~~i~~~~~ 335 (335)
T 2r3s_A 317 HSQLHSLPT---TQQQVIVAYK 335 (335)
T ss_dssp EEEEECCTT---SSSEEEEEEC
T ss_pred eeeEEECCC---CceeEEEecC
Confidence 554322222 3467777664
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.6e-06 Score=87.13 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=63.3
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhhcc-cceec-cccccCCCCCcccceeeccccccccC
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYERGL-IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIYQ 556 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~~ 556 (629)
.+|||+|||.|.++..|++. +. +|+.+|.++.++..+.+++- +.... |. +.++.-+.+||+|.+..+
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~----- 157 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA----- 157 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC-----
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC-----
Confidence 46999999999999999876 43 34555666678888888763 22222 21 222222279999998433
Q ss_pred CCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 557 DRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
...|.|+.|+|||||.+++.+..
T Consensus 158 -----~~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 158 -----PCKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp -----CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred -----hhhHHHHHHhcCCCcEEEEEEcC
Confidence 23589999999999999997643
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-06 Score=88.26 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=74.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCC--CCchHHHHhhcc-cceeccccccCCCCC-cccceeecc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSN--PDTLGAIYERGL-IGTYQDWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~--~~~l~~~~ergl-i~~~~~~~e~f~~yp-~t~Dl~H~~ 549 (629)
+.++ ..|||+|||.|+|+.+|+++ .|+.+-+.|.... .+.+. ....|. +-.+++ +..+..+| .+||+|-|+
T Consensus 72 ~~~g--~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~-~~~~~~~v~~~~~-~~D~~~l~~~~fD~V~sd 147 (265)
T 2oxt_A 72 VELT--GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRI-TESYGWNIVKFKS-RVDIHTLPVERTDVIMCD 147 (265)
T ss_dssp CCCC--EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCC-CCBTTGGGEEEEC-SCCTTTSCCCCCSEEEEC
T ss_pred CCCC--CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhh-hhccCCCeEEEec-ccCHhHCCCCCCcEEEEe
Confidence 3444 46999999999999999875 5777766663110 00000 000111 122210 12333344 899999987
Q ss_pred ccccccCCCcCH---HHHHHHHhhcccCCc--EEEEEeC----HHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEE
Q 006834 550 GVFSIYQDRCDI---TNILLEMDRILRPEG--TVIFRDT----VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAA 620 (629)
Q Consensus 550 ~~fs~~~~~c~~---~~~l~e~dRiLrPgG--~~i~~d~----~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~ 620 (629)
..+......-+. ..+|.++.|+||||| .|++..- .+++..++.+.+.+. .+.+...-+-....|..+||.
T Consensus 148 ~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~ 226 (265)
T 2oxt_A 148 VGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSR 226 (265)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESS
T ss_pred CcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEec
Confidence 552211100000 127888999999999 9999642 322233333333222 233333222234567777775
Q ss_pred e
Q 006834 621 K 621 (629)
Q Consensus 621 K 621 (629)
+
T Consensus 227 ~ 227 (265)
T 2oxt_A 227 A 227 (265)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.04 E-value=6.9e-06 Score=82.40 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=58.2
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCc----hHHHHhhccc-ceecccccc--CCCCCcccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDT----LGAIYERGLI-GTYQDWCEA--FSTYPRTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~----l~~~~ergli-~~~~~~~e~--f~~yp~t~D 544 (629)
+.+|. .|||+|||+|+++.+|++. .- .|+.+|.++.+ +..+.+|.-| .+..|-... +...+..||
T Consensus 74 l~~g~--~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 74 IRKGT--KVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEE
T ss_pred CCCCC--EEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceE
Confidence 45554 5999999999999988764 11 23334444444 3444454322 223333221 112347899
Q ss_pred eeeccccccccCCCcCHHHHHHH-HhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQDRCDITNILLE-MDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e-~dRiLrPgG~~i~~ 581 (629)
+|.++..+ .+...+|.+ +.|+|||||.+++.
T Consensus 149 ~I~~d~a~------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 149 VLYVDIAQ------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCCC------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 99886433 455666654 56699999999986
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-06 Score=84.86 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=66.5
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCC--Ccccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTY--PRTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~y--p~t~Dl~H~~ 549 (629)
.+|||+|||.|.++.+|++. + ..+|+.+|.++..+..+.++ |+ +.+.+ |..+..... +.+||+|-++
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALP--EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCT--TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 36999999999999999765 1 12455566666777777766 55 33333 333322223 4789999875
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
..++ +...+|.++-|+|||||.+++.+
T Consensus 134 ~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 5543 56889999999999999999974
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.9e-06 Score=87.27 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=64.8
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCC--CCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFS--TYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~--~yp~t~Dl~H~~~~ 551 (629)
.+|||+|||.|.++..+++.+. -.|..+|.+ .++..+.++ |+ |.+++ ..+. ..|..||+|-+..+
T Consensus 52 ~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s-~~~~~a~~~~~~~~l~~~v~~~~---~d~~~~~~~~~~D~Ivs~~~ 125 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQAGA--RKIYAVEAS-TMAQHAEVLVKSNNLTDRIVVIP---GKVEEVSLPEQVDIIISEPM 125 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEE---SCTTTCCCSSCEEEEEECCC
T ss_pred CEEEEcCCCccHHHHHHHhCCC--CEEEEECCH-HHHHHHHHHHHHcCCCCcEEEEE---cchhhCCCCCceeEEEEeCc
Confidence 4699999999999999987754 234444554 355555443 55 44444 2222 24588999999877
Q ss_pred ccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 552 FSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 552 fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+..... -.+...+.++.|+|+|||.+++.
T Consensus 126 ~~~~~~-~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 126 GYMLFN-ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp BTTBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred hhcCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 664432 24667888999999999999864
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=85.58 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=90.4
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHh----hcc---cceeccccccCCCCCcccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYE----RGL---IGTYQDWCEAFSTYPRTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~e----rgl---i~~~~~~~e~f~~yp~t~Dl 545 (629)
+......+|||+|||.|.++.+|++. ++- ++-.|. +.++..+.+ .|+ |.... ...|..+|..||+
T Consensus 198 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~--~d~~~~~p~~~D~ 271 (369)
T 3gwz_A 198 YDFSGAATAVDIGGGRGSLMAAVLDAFPGLR---GTLLER-PPVAEEARELLTGRGLADRCEILP--GDFFETIPDGADV 271 (369)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE--CCTTTCCCSSCSE
T ss_pred CCCccCcEEEEeCCCccHHHHHHHHHCCCCe---EEEEcC-HHHHHHHHHhhhhcCcCCceEEec--cCCCCCCCCCceE
Confidence 44455678999999999999999775 332 233344 356665554 354 33322 1223567778999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------H------------HHHHHHHHHhcCCCeE
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------------E------------MLVKIRSITEGMRWKS 601 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~------------~~~~~~~~~~~l~w~~ 601 (629)
|.+..++-.+.+. ....+|.++-|+|||||+++|.|.. + ....++++++.-.++.
T Consensus 272 v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~ 350 (369)
T 3gwz_A 272 YLIKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRV 350 (369)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEE
T ss_pred EEhhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeE
Confidence 9998888654322 2246999999999999999996521 1 1455677778777876
Q ss_pred EEeecCCCCCCCceEEEEEec
Q 006834 602 QIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 602 ~~~~~e~~~~~~e~~l~~~K~ 622 (629)
.-+..- ......|+.|+|.
T Consensus 351 ~~~~~~--~~~~~svie~~~a 369 (369)
T 3gwz_A 351 ERSLPC--GAGPVRIVEIRRA 369 (369)
T ss_dssp EEEEEC--SSSSEEEEEEEEC
T ss_pred EEEEEC--CCCCcEEEEEEeC
Confidence 544321 1135678888873
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.4e-06 Score=87.90 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=57.5
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHH-h-hcc--cceeccccccCCCCC-cccceeeccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIY-E-RGL--IGTYQDWCEAFSTYP-RTYDLIHASGVFSI 554 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~-e-rgl--i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs~ 554 (629)
..|||+|||.|+|+.+|+++ .|..+-+.....+ .++..+. + .|. +.+..+ . .+...| .+||+|.|+..|+.
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~-~~~~~~~~~~~~~~~v~~~~~-~-D~~~l~~~~fD~V~sd~~~~~ 160 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPIPMSTYGWNLVRLQSG-V-DVFFIPPERCDTLLCDIGESS 160 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST-TSCCCCCCCSTTGGGEEEECS-C-CTTTSCCCCCSEEEECCCCCC
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCch-hHHHHHHhhhcCCCCeEEEec-c-ccccCCcCCCCEEEECCcccc
Confidence 46999999999999999887 4655544111111 1111000 1 111 222221 0 233334 79999999887752
Q ss_pred cCCCcC---HHHHHHHHhhcccCCcEEEEE
Q 006834 555 YQDRCD---ITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 555 ~~~~c~---~~~~l~e~dRiLrPgG~~i~~ 581 (629)
....-+ ...+|.++.|+|||||.|++.
T Consensus 161 g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 161 PNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 111001 114788999999999999995
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=79.46 Aligned_cols=132 Identities=15% Similarity=0.096 Sum_probs=74.7
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCC----chHHHHhhcccceec-ccccc--CCCCCcccceeecccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPD----TLGAIYERGLIGTYQ-DWCEA--FSTYPRTYDLIHASGV 551 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~----~l~~~~ergli~~~~-~~~e~--f~~yp~t~Dl~H~~~~ 551 (629)
.+|||+|||+|.++.+|++. +- -.|..+|.++. .+..+.++.-+..++ |..+. ++..+.+||+|.++..
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~--~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPD--GLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA 156 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred CEEEEEcccCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence 36999999999999999765 11 12334455433 344444432233333 33221 1222478999988433
Q ss_pred ccccCCCcCH-HHHHHHHhhcccCCcEEEEEeCHH----------HHHHHHHHHhcCCCeEEE-eecCCCCCCCceEEEE
Q 006834 552 FSIYQDRCDI-TNILLEMDRILRPEGTVIFRDTVE----------MLVKIRSITEGMRWKSQI-MDHESGPFNPEKILFA 619 (629)
Q Consensus 552 fs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d~~~----------~~~~~~~~~~~l~w~~~~-~~~e~~~~~~e~~l~~ 619 (629)
..+. ..++.++-|+|||||.+++.-... ...+-.+++....|+..- .+.+.-+ ...-++++
T Consensus 157 ------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~v~~ 229 (233)
T 2ipx_A 157 ------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYE-RDHAVVVG 229 (233)
T ss_dssp ------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTS-SSEEEEEE
T ss_pred ------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCcc-CCcEEEEE
Confidence 2222 345778999999999999963331 122223555666676543 3333222 23456666
Q ss_pred Ee
Q 006834 620 AK 621 (629)
Q Consensus 620 ~K 621 (629)
+|
T Consensus 230 ~~ 231 (233)
T 2ipx_A 230 VY 231 (233)
T ss_dssp EE
T ss_pred Ee
Confidence 65
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-05 Score=79.66 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=74.6
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh-----cc--cceec-cccccCCCCC-cc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER-----GL--IGTYQ-DWCEAFSTYP-RT 542 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er-----gl--i~~~~-~~~e~f~~yp-~t 542 (629)
+.++. +|||+|||.|.++.+|++. .. +|+.+|.++..+..+.++ |. +.+.+ |..+. .+| .+
T Consensus 94 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~ 166 (258)
T 2pwy_A 94 LAPGM--RVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAA 166 (258)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTC
T ss_pred CCCCC--EEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCC
Confidence 44443 6999999999999999765 23 344455555677777766 63 33333 33322 245 78
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCe
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE-MLVKIRSITEGMRWK 600 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~l~w~ 600 (629)
||+|-++ --+...+|.++.|+|||||.+++..... .+.++.+.+....|.
T Consensus 167 ~D~v~~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 167 YDGVALD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp EEEEEEE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred cCEEEEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 9998762 2344579999999999999999987653 455666666555554
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.02 E-value=8.2e-06 Score=78.90 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=72.3
Q ss_pred eEEEeecccchhHHhhhhCCC--eEEEEecCCCCCCCchHHHHhhcccceeccccccCCC-------CC----cccceee
Q 006834 481 RNVMDMNAYLGGFAAAMSKYP--VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFST-------YP----RTYDLIH 547 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~--v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~-------yp----~t~Dl~H 547 (629)
.+|||+|||+|+++.+|++++ |+.+-+.|.... .++--+..|..+. .+ ++ .+||+|-
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~---------~~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vl 96 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEI---------AGVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVV 96 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCC---------TTCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccC---------CCeEEEEccccCH-HHHHHHHHHhhcccCCcceEEe
Confidence 469999999999999999874 444555443211 1221111222211 00 11 4899999
Q ss_pred ccccccccCC--------CcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEEEee-cCCCCCCCceEE
Q 006834 548 ASGVFSIYQD--------RCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQIMD-HESGPFNPEKIL 617 (629)
Q Consensus 548 ~~~~fs~~~~--------~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~-~e~~~~~~e~~l 617 (629)
++.-...... ....+.+|.++-|+|||||.|++..- .+....+...++..==++.++. ..+-+...|..+
T Consensus 97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEEEEEEECC------CCEEEE
T ss_pred cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcCEEEEECCCCccCCCceEEE
Confidence 8764332111 11234578899999999999998532 1122344444444322233332 223344689999
Q ss_pred EEEec
Q 006834 618 FAAKT 622 (629)
Q Consensus 618 ~~~K~ 622 (629)
||++-
T Consensus 177 v~~~~ 181 (191)
T 3dou_A 177 MFFGF 181 (191)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 99763
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-06 Score=82.49 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=63.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||.|.++..|++.. -+|..+|.++..+..+.++ |+ +.+.+ |..+.. .-..+||+|.+++.+.
T Consensus 79 ~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 154 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTAAPP 154 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESSBCS
T ss_pred CEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEccchh
Confidence 469999999999999998874 3455556666777777665 44 33333 222211 1137899999977765
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
.... ++-|+|||||.+++.-..
T Consensus 155 ~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 155 EIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SCCT---------HHHHTEEEEEEEEEEECS
T ss_pred hhhH---------HHHHhcccCcEEEEEEcC
Confidence 4332 688999999999997554
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=82.13 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=71.7
Q ss_pred CCeeEEEeecccc---hhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cccceec-ccccc-----C----CCC
Q 006834 478 GRYRNVMDMNAYL---GGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQ-DWCEA-----F----STY 539 (629)
Q Consensus 478 ~~~R~vlD~~~g~---Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gli~~~~-~~~e~-----f----~~y 539 (629)
..++.|||+|||+ |.+...+... += ..|+.+|.++.++..+.++ +-+..++ |..+. . ..+
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 3568899999999 9887666432 11 2456667766788887765 2233232 22110 0 135
Q ss_pred C-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 540 P-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 540 p-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
| .+||+|-+.++|-...+. +...+|.|+-|+|||||+++|.+.
T Consensus 154 d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 5 589999888888766655 789999999999999999999864
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-06 Score=79.92 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=66.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCC---Ccccceeecc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTY---PRTYDLIHAS 549 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~y---p~t~Dl~H~~ 549 (629)
.+|||+|||.|.++.++++.+. .+|+.+|.++.++..+.++ |+ +.+++ |+.+..... +.+||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 3699999999999998877653 2455566655666665543 43 33444 443322222 4789999987
Q ss_pred ccccccCCCcCHHHHHHHH--hhcccCCcEEEEEeCH
Q 006834 550 GVFSIYQDRCDITNILLEM--DRILRPEGTVIFRDTV 584 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~ 584 (629)
..|. ....+.++.++ .|+|+|||.+++....
T Consensus 124 ~~~~----~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 124 PPYA----KQEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCGG----GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCC----chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 7654 23456677777 9999999999997544
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.7e-06 Score=84.19 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=65.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCc-EeEEEeecCcHHHHHHHHHc-CCCeEEEEecCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDIL-TMSFARRDTHEAQVQFALER-GVPAMIGVISSKRLPYP 283 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~-~v~i~gvDiS~~~i~~A~er-g~~~~~~v~d~~~Lp~p 283 (629)
...++.|.+.+...++. +|||||||+|.++..|++++.. ...++++|+++.+++.++++ ..++.+..+|...++++
T Consensus 28 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGE--RMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 45677777777665554 8999999999999999998654 11256679999999999987 45688999999888765
Q ss_pred CC------CeeEEEecC
Q 006834 284 AR------AFDMAHCSG 294 (629)
Q Consensus 284 d~------sFDlV~~s~ 294 (629)
+- ..+.|+++.
T Consensus 106 ~~~~~~~~~~~~vv~Nl 122 (279)
T 3uzu_A 106 SIARPGDEPSLRIIGNL 122 (279)
T ss_dssp GGSCSSSSCCEEEEEEC
T ss_pred HhcccccCCceEEEEcc
Confidence 31 234566655
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.01 E-value=7.3e-06 Score=80.88 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=73.9
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc--c--cceec-ccccc--CCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG--L--IGTYQ-DWCEA--FSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg--l--i~~~~-~~~e~--f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||+|.++.+|++. +- -.|+.+|.++.++..+.++- . +-..+ |..+. +..++.+||+|-.+ +
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~-~- 151 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED-V- 151 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC-C-
T ss_pred CEEEEEcccCCHHHHHHHHHcCC--cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe-c-
Confidence 46999999999999999865 31 13445555556666655432 1 22222 22211 02234789986521 1
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEE----e--C---HH--HHHHHHHHHhcCCCeEE-EeecCCCCC-CCceEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFR----D--T---VE--MLVKIRSITEGMRWKSQ-IMDHESGPF-NPEKILFA 619 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~----d--~---~~--~~~~~~~~~~~l~w~~~-~~~~e~~~~-~~e~~l~~ 619 (629)
...-..+.+|.++.|+|||||.+++. . . .. ....++ ++....++.. ..+.+ +. ..--++++
T Consensus 152 ---~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~--~~~~~~~~v~~ 225 (230)
T 1fbn_A 152 ---AQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIE--PFEKDHVMFVG 225 (230)
T ss_dssp ---CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECT--TTSTTEEEEEE
T ss_pred ---CChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccC--CCccceEEEEE
Confidence 11112366899999999999999994 1 1 01 124555 5554445543 22222 22 23467788
Q ss_pred Eec
Q 006834 620 AKT 622 (629)
Q Consensus 620 ~K~ 622 (629)
+|+
T Consensus 226 ~k~ 228 (230)
T 1fbn_A 226 IWE 228 (230)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.01 E-value=5.1e-06 Score=80.81 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=71.3
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHH--------hhcc--cceeccccccCCCCCcccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIY--------ERGL--IGTYQDWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~--------ergl--i~~~~~~~e~f~~yp~t~Dl~H~ 548 (629)
..|||+|||+|.++.+|++. +. +|+.+|.++.++..+. .+|+ +...+.=.+.++..+.+ |.+..
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSR---LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTE---EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 45999999999999999876 33 4566666667777532 3454 23333212233322244 76662
Q ss_pred cccccccC----CCcCHHHHHHHHhhcccCCcEEEEEeC------------------HH-HHHHHHHHHhcCCCeEE
Q 006834 549 SGVFSIYQ----DRCDITNILLEMDRILRPEGTVIFRDT------------------VE-MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 549 ~~~fs~~~----~~c~~~~~l~e~dRiLrPgG~~i~~d~------------------~~-~~~~~~~~~~~l~w~~~ 602 (629)
+|+... +.-+.+.+|.|+-|+|||||.++++.. .. ....+++++..--|++.
T Consensus 105 --~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 105 --LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp --ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred --EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 232100 111226799999999999999999621 11 23347778888788765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=7.5e-06 Score=86.08 Aligned_cols=137 Identities=24% Similarity=0.327 Sum_probs=86.6
Q ss_pred CCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceee
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
..-.+|||+|||.|.++.+|++. ++-+ +.+|. +.++..+.++ |+ +...+ |+ +..+|..||++.
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~v~ 254 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSA---TVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAII 254 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEE---EEecC-HHHHHHHHHHHHhcCCCCceEEEeCCC---CCCCCCCccEEE
Confidence 34467999999999999999765 3322 23343 2577766553 44 22222 33 345676799999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------H------------------HHHHHHHHHhcCCCeE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV--------E------------------MLVKIRSITEGMRWKS 601 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------~------------------~~~~~~~~~~~l~w~~ 601 (629)
+..++..+.+. +...+|.++-|+|||||.++|.|.. . ....++++++.-.++.
T Consensus 255 ~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (360)
T 1tw3_A 255 LSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 333 (360)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred EcccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeE
Confidence 88877654321 2357999999999999999997644 0 1245566677767765
Q ss_pred EEeecCCCC--CCCceEEEEEec
Q 006834 602 QIMDHESGP--FNPEKILFAAKT 622 (629)
Q Consensus 602 ~~~~~e~~~--~~~e~~l~~~K~ 622 (629)
.-+..-.++ .....++.++|.
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 334 EEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEEeCCCCcccCccEEEEEEeC
Confidence 433222111 011578888885
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=8.1e-06 Score=83.71 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=81.0
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh-----cc-----------cceec-cccccCCCCCccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER-----GL-----------IGTYQ-DWCEAFSTYPRTY 543 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er-----gl-----------i~~~~-~~~e~f~~yp~t~ 543 (629)
++|||+|||.|+++.+|++.+. .+|+-+|..+..+..+.++ |+ +.+++ |..+-... +.+|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 5799999999999999988754 3555556655677777654 33 22222 11111122 6889
Q ss_pred ceeeccccccccCCCc-CHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCeEEEeec--CCCCCCCce
Q 006834 544 DLIHASGVFSIYQDRC-DITNILLEMDRILRPEGTVIFRD-----TVEMLVKIRSITEGMRWKSQIMDH--ESGPFNPEK 615 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c-~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~~~~~~--e~~~~~~e~ 615 (629)
|+|-++.......... ....++.++.|+|||||.+++.. ..+....+.+.++..--.+..+.. ..+ .+...
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~-~g~~~ 232 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY-ASPWA 232 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS-SSSEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC-CceEE
Confidence 9998854322111111 12678999999999999999962 233344444444433233333221 111 23467
Q ss_pred EEEEEec
Q 006834 616 ILFAAKT 622 (629)
Q Consensus 616 ~l~~~K~ 622 (629)
+++|.|.
T Consensus 233 ~~~as~~ 239 (281)
T 1mjf_A 233 FLVGVKG 239 (281)
T ss_dssp EEEEEES
T ss_pred EEEeeCC
Confidence 8888886
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=97.99 E-value=4.2e-06 Score=83.54 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=68.9
Q ss_pred eeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh-------cc-------------------------
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER-------GL------------------------- 525 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er-------gl------------------------- 525 (629)
-..|||+|||+|.++..|++. . -..+|+.+|.++.++..+.++ |+
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 357999999999999998765 1 124677778776777776532 33
Q ss_pred ---cc-------------eec-cccccCCC---CC-cccceeeccccccccCC------CcCHHHHHHHHhhcccCCcEE
Q 006834 526 ---IG-------------TYQ-DWCEAFST---YP-RTYDLIHASGVFSIYQD------RCDITNILLEMDRILRPEGTV 578 (629)
Q Consensus 526 ---i~-------------~~~-~~~e~f~~---yp-~t~Dl~H~~~~fs~~~~------~c~~~~~l~e~dRiLrPgG~~ 578 (629)
+. ..+ |+.+.+.. -+ ..||+|-++-.|..... .-....++.++-|+|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 22 332 33332110 03 48999998766543222 123457999999999999999
Q ss_pred EEEeCH
Q 006834 579 IFRDTV 584 (629)
Q Consensus 579 i~~d~~ 584 (629)
++.+..
T Consensus 211 ~~~~~~ 216 (250)
T 1o9g_A 211 AVTDRS 216 (250)
T ss_dssp EEEESS
T ss_pred EEeCcc
Confidence 997655
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-06 Score=89.44 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=82.4
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchH--HHHhhcccceecccc-ccCCCCCcccceeecc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLG--AIYERGLIGTYQDWC-EAFSTYPRTYDLIHAS 549 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~--~~~ergli~~~~~~~-e~f~~yp~t~Dl~H~~ 549 (629)
+......+|||+|||.|.++.+|++. ++-+ +..|.+ ..+. .+.+.|+-+-+.-.+ ..|...| +||+|.+.
T Consensus 180 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~---~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~v~~~ 254 (348)
T 3lst_A 180 GDFPATGTVADVGGGRGGFLLTVLREHPGLQG---VLLDRA-EVVARHRLDAPDVAGRWKVVEGDFLREVP-HADVHVLK 254 (348)
T ss_dssp SCCCSSEEEEEETCTTSHHHHHHHHHCTTEEE---EEEECH-HHHTTCCCCCGGGTTSEEEEECCTTTCCC-CCSEEEEE
T ss_pred CCccCCceEEEECCccCHHHHHHHHHCCCCEE---EEecCH-HHhhcccccccCCCCCeEEEecCCCCCCC-CCcEEEEe
Confidence 44455678999999999999999763 3322 222222 1111 011123322111111 2235677 99999998
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------H----------------HHHHHHHHHhcCCCeEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV---------E----------------MLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------~----------------~~~~~~~~~~~l~w~~~~~ 604 (629)
.++-.+.+. +...+|.++-|+|||||.++|.|.. . ....++++++.-.++..-+
T Consensus 255 ~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 333 (348)
T 3lst_A 255 RILHNWGDE-DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRV 333 (348)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred hhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEE
Confidence 877654422 2357999999999999999997531 0 1345667777777766543
Q ss_pred ecCCCCCCCceEEEEEe
Q 006834 605 DHESGPFNPEKILFAAK 621 (629)
Q Consensus 605 ~~e~~~~~~e~~l~~~K 621 (629)
... + ....|+.++|
T Consensus 334 ~~~-~--~~~~vie~~p 347 (348)
T 3lst_A 334 VGT-S--SVMSIAVGVP 347 (348)
T ss_dssp EEC-S--SSCEEEEEEE
T ss_pred EEC-C--CCcEEEEEEe
Confidence 332 1 2455666655
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.99 E-value=7.2e-06 Score=83.32 Aligned_cols=107 Identities=13% Similarity=0.143 Sum_probs=74.2
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh-----cc--cceec-cccccCCCCC-cccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER-----GL--IGTYQ-DWCEAFSTYP-RTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er-----gl--i~~~~-~~~e~f~~yp-~t~Dl~H~ 548 (629)
.+|||+|||.|+++.+|++. +. +|+.+|.++..+..+.++ |+ +.+.+ |+.+ .+| .+||+|-+
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~~~~~fD~Vi~ 185 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQMYDAVIA 185 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSCCEEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---cCcCCCccEEEE
Confidence 46999999999999999865 33 445556666777777665 54 33333 3322 344 68999876
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhcCCCeE
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE-MLVKIRSITEGMRWKS 601 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~l~w~~ 601 (629)
+--+...+|.++-|+|||||.+++.+... ....+.+.+....|..
T Consensus 186 --------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 186 --------DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp --------CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred --------cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 22244679999999999999999987654 5566666666655554
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=89.96 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=84.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCC--------------cEeEEEeecCcHHHHHHHHHc----C
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI--------------LTMSFARRDTHEAQVQFALER----G 267 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~--------------~~v~i~gvDiS~~~i~~A~er----g 267 (629)
...++.+.+++.... .+|||.+||+|.|...+++.-. ....++|+|+++.+++.|+.+ +
T Consensus 231 ~~Vv~lmv~ll~p~~---~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g 307 (544)
T 3khk_A 231 KSIVTLIVEMLEPYK---GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG 307 (544)
T ss_dssp HHHHHHHHHHHCCCS---EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC---CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence 556777777775532 2899999999999887754310 034789999999999999854 4
Q ss_pred CCeEE--EEecCCCCC-CCCCCeeEEEecCcccc--ccc-----------------------C---HHHHHHHHHhcccC
Q 006834 268 VPAMI--GVISSKRLP-YPARAFDMAHCSGCLIP--WYM-----------------------Y---DGLYLLEVDRVLRP 316 (629)
Q Consensus 268 ~~~~~--~v~d~~~Lp-~pd~sFDlV~~s~~L~h--~~~-----------------------d---~~~~L~el~RvLKP 316 (629)
....+ ..+|....+ +++..||+|+++..+.. |.. . .-.++..+.+.|+|
T Consensus 308 i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 387 (544)
T 3khk_A 308 IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP 387 (544)
T ss_dssp CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE
T ss_pred CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc
Confidence 44333 556655444 45679999999776542 110 0 12589999999999
Q ss_pred CcEEEEEeCCC
Q 006834 317 GGYWILSGPPI 327 (629)
Q Consensus 317 GG~liis~P~~ 327 (629)
||++.+..|..
T Consensus 388 gGr~aiVlP~g 398 (544)
T 3khk_A 388 TGSMALLLANG 398 (544)
T ss_dssp EEEEEEEEETH
T ss_pred CceEEEEecch
Confidence 99999998743
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.1e-06 Score=83.01 Aligned_cols=91 Identities=16% Similarity=0.153 Sum_probs=63.8
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----ccceec-cccccCCCCCcccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----LIGTYQ-DWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----li~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||.|.++..|++.. -+|+.+|.++..+..+.++. -+.+.+ |..+.+. -+.+||+|.+.+++...
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTL 147 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSC
T ss_pred CEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHHH
Confidence 369999999999999998875 35566666667888877763 123332 3322111 23789999997776532
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
..++-|+|||||.+++....
T Consensus 148 ---------~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 148 ---------LCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp ---------CHHHHHTEEEEEEEEEEECS
T ss_pred ---------HHHHHHHcCCCcEEEEEEcC
Confidence 24789999999999998653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.98 E-value=1e-05 Score=80.62 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=74.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----ccc---ceec-cccccCCCCC-cc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GLI---GTYQ-DWCEAFSTYP-RT 542 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gli---~~~~-~~~e~f~~yp-~t 542 (629)
+.++. +|||+|||.|.++.+|++. .. .|+.+|.++..+..+.++ |+- -+.+ |..+ .+| .+
T Consensus 91 ~~~~~--~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~ 162 (255)
T 3mb5_A 91 ISPGD--FIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE---GIEEEN 162 (255)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG---CCCCCS
T ss_pred CCCCC--EEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh---ccCCCC
Confidence 44443 5999999999999999876 33 344456665777777665 653 3333 4443 345 78
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCC
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMR 598 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~ 598 (629)
||+|-+ +-.+...+|.++.|+|||||.+++... .+...++.+.++...
T Consensus 163 ~D~v~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 163 VDHVIL--------DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp EEEEEE--------CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred cCEEEE--------CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 999876 223446789999999999999998764 455666666666655
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.6e-05 Score=78.83 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=65.1
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-CCCeEEEEecCCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-GVPAMIGVISSKRLPYPA 284 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-g~~~~~~v~d~~~Lp~pd 284 (629)
...++.|.+.+....+. +|||+|||+|.++..|++++. ..++++|+++.+++.++++ ..++.+..+|...+++++
T Consensus 17 ~~i~~~iv~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGN--TVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence 55677788877765554 899999999999999999852 2457779999999999887 235789999998888764
Q ss_pred C--CeeEEEecCcc
Q 006834 285 R--AFDMAHCSGCL 296 (629)
Q Consensus 285 ~--sFDlV~~s~~L 296 (629)
. .| .|+++..+
T Consensus 93 ~~~~~-~vv~NlPy 105 (249)
T 3ftd_A 93 LGKEL-KVVGNLPY 105 (249)
T ss_dssp SCSSE-EEEEECCT
T ss_pred ccCCc-EEEEECch
Confidence 2 33 55555533
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.7e-06 Score=81.41 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=63.1
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC----C-eEEEEecCCCCCCCchHHHH----hhccccee-ccccccCCCCC---
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY----P-VWVMNVVPFHSNPDTLGAIY----ERGLIGTY-QDWCEAFSTYP--- 540 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~----ergli~~~-~~~~e~f~~yp--- 540 (629)
.|++|.. |||+|||.|.|+.+|++. + |+.+.+.| .++..+. +++.+..+ .+-+. ...||
T Consensus 74 ~ikpG~~--VldlG~G~G~~~~~la~~VG~~G~V~avD~s~-----~~~~~l~~~a~~~~ni~~V~~d~~~-p~~~~~~~ 145 (233)
T 4df3_A 74 PVKEGDR--ILYLGIASGTTASHMSDIIGPRGRIYGVEFAP-----RVMRDLLTVVRDRRNIFPILGDARF-PEKYRHLV 145 (233)
T ss_dssp CCCTTCE--EEEETCTTSHHHHHHHHHHCTTCEEEEEECCH-----HHHHHHHHHSTTCTTEEEEESCTTC-GGGGTTTC
T ss_pred CCCCCCE--EEEecCcCCHHHHHHHHHhCCCceEEEEeCCH-----HHHHHHHHhhHhhcCeeEEEEeccC-cccccccc
Confidence 3677874 999999999999999864 2 56655543 4555444 34443333 23332 22333
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.++|+|.++ +. ..-+.+.+|.|+.|+|||||.++|.+
T Consensus 146 ~~vDvVf~d--~~---~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 146 EGVDGLYAD--VA---QPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CCEEEEEEC--CC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEEe--cc---CChhHHHHHHHHHHhccCCCEEEEEE
Confidence 788887653 11 12245678999999999999999963
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.2e-06 Score=80.87 Aligned_cols=127 Identities=13% Similarity=0.214 Sum_probs=79.4
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-----cccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-----RTYD 544 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-----~t~D 544 (629)
++|||+|||.|.++.+|++. +. .|+.+|.++..+..+.++ |+ |.+.. |..+.+..+| .+||
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 47999999999999999875 22 334445555666666544 55 33333 2222222232 6899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHHH----HhcCCCeEEEeecCC
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------------EMLVKIRSI----TEGMRWKSQIMDHES 608 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~~----~~~l~w~~~~~~~e~ 608 (629)
+|.++.. .-+...++.++-|+|||||.+++.+.. .....++++ ...-+++..+...
T Consensus 151 ~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-- 222 (232)
T 3cbg_A 151 LIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL-- 222 (232)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS--
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc--
Confidence 9987543 234577999999999999999995321 122333333 3445666666543
Q ss_pred CCCCCceEEEEEec
Q 006834 609 GPFNPEKILFAAKT 622 (629)
Q Consensus 609 ~~~~~e~~l~~~K~ 622 (629)
.+.+.+++|.
T Consensus 223 ----~dG~~~~~~~ 232 (232)
T 3cbg_A 223 ----GDGMTLALKK 232 (232)
T ss_dssp ----BTCEEEEEEC
T ss_pred ----CCeEEEEEeC
Confidence 3458888874
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.96 E-value=9.6e-06 Score=82.22 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=62.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.|.+.+...++. +|||||||+|.++. +. ++.. ..++++|+++.|++.++++. .++.+..+|...+++
T Consensus 7 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~-l~-~~~~-~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTE-PV-GERL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEEECCTTTTTHH-HH-HTTC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred HHHHHHHHHhcCCCCcC--EEEEECCCCcHHHH-hh-hCCC-CeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCH
Confidence 44566777777655444 89999999999999 65 4433 11567799999999998864 368899999988876
Q ss_pred CC-----CCeeEEEecCcc
Q 006834 283 PA-----RAFDMAHCSGCL 296 (629)
Q Consensus 283 pd-----~sFDlV~~s~~L 296 (629)
++ +..|.|+++..+
T Consensus 82 ~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHHTSCEEEEEECCT
T ss_pred HHhhcccCCceEEEECCCC
Confidence 43 235788877644
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.4e-05 Score=78.95 Aligned_cols=127 Identities=11% Similarity=0.107 Sum_probs=80.1
Q ss_pred EEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc----cceec-cccccCCCC-Ccccceeec
Q 006834 482 NVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL----IGTYQ-DWCEAFSTY-PRTYDLIHA 548 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl----i~~~~-~~~e~f~~y-p~t~Dl~H~ 548 (629)
+|||+|||+|.++.+|++. +- .|+.+|.++.++..+.++ |+ |.+.+ |..+.+..+ +.+||+|-+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 7999999999999988762 22 234445555566665432 44 23333 222333445 489999977
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHHHHhcCCCe----EEEeecCCCCCC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------------EMLVKIRSITEGMRWK----SQIMDHESGPFN 612 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~~~~~l~w~----~~~~~~e~~~~~ 612 (629)
+.. .-....++.++-|+|||||.+++.|-. .....++++.+.++++ +.+.. .
T Consensus 136 d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp------~ 203 (221)
T 3dr5_A 136 QVS------PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLP------L 203 (221)
T ss_dssp CCC------TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEES------S
T ss_pred cCc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEee------c
Confidence 542 234567899999999999999995321 1233455555555554 33432 2
Q ss_pred CceEEEEEecc
Q 006834 613 PEKILFAAKTY 623 (629)
Q Consensus 613 ~e~~l~~~K~~ 623 (629)
.+.+++++|..
T Consensus 204 gdGl~~~~~~~ 214 (221)
T 3dr5_A 204 GAGLTVVTKAL 214 (221)
T ss_dssp TTCEEEEEECC
T ss_pred cchHHHHHHHH
Confidence 46799999875
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.95 E-value=7.3e-06 Score=83.37 Aligned_cols=83 Identities=13% Similarity=0.045 Sum_probs=60.0
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcH-------HHHHHHHHc----C--CCeEEEEecC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHE-------AQVQFALER----G--VPAMIGVISS 277 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~-------~~i~~A~er----g--~~~~~~v~d~ 277 (629)
.+.+.+....+ .+|||+|||+|.++..|++.+.. ++++|+++ .+++.|+++ + ..+.+..+|.
T Consensus 74 ~l~~a~~~~~~--~~VLDlgcG~G~~a~~lA~~g~~---V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~ 148 (258)
T 2r6z_A 74 LIAKAVNHTAH--PTVWDATAGLGRDSFVLASLGLT---VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA 148 (258)
T ss_dssp HHHHHTTGGGC--CCEEETTCTTCHHHHHHHHTTCC---EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred HHHHHhCcCCc--CeEEEeeCccCHHHHHHHHhCCE---EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence 34444433333 38999999999999999998764 45669999 999988764 2 2388888887
Q ss_pred CCC-C-CCC--CCeeEEEecCcccc
Q 006834 278 KRL-P-YPA--RAFDMAHCSGCLIP 298 (629)
Q Consensus 278 ~~L-p-~pd--~sFDlV~~s~~L~h 298 (629)
..+ + +++ ++||+|++...+.+
T Consensus 149 ~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 149 AEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCC--
T ss_pred HHHHHhhhccCCCccEEEECCCCCC
Confidence 663 3 444 78999999876644
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.94 E-value=9e-06 Score=80.60 Aligned_cols=128 Identities=11% Similarity=0.141 Sum_probs=80.3
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCC-----------
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFST----------- 538 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~----------- 538 (629)
.+|||+|||.|.++..|++. +. +|+.+|..+..+..+.++ |+ +.+.+ |..+.+..
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 36999999999999999764 22 344445555667666655 54 23322 22221111
Q ss_pred --C--C-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC------------HHHHHH----HHHHHhcC
Q 006834 539 --Y--P-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT------------VEMLVK----IRSITEGM 597 (629)
Q Consensus 539 --y--p-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~------------~~~~~~----~~~~~~~l 597 (629)
| + .+||+|.++.. .-..+.+|.++-|+|||||.+++.+. ...... .+.+...-
T Consensus 139 ~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDS 212 (239)
T ss_dssp TTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred ccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCC
Confidence 1 2 68999987532 23456889999999999999999751 112222 33444556
Q ss_pred CCeEEEeecCCCCCCCceEEEEEecc
Q 006834 598 RWKSQIMDHESGPFNPEKILFAAKTY 623 (629)
Q Consensus 598 ~w~~~~~~~e~~~~~~e~~l~~~K~~ 623 (629)
++++.++... ..+.+++|+.
T Consensus 213 ~~~~~~~p~~------~g~~~~~~~~ 232 (239)
T 2hnk_A 213 LVDVSLVPIA------DGVSLVRKRL 232 (239)
T ss_dssp TEEEEEECST------TCEEEEEECC
T ss_pred CeEEEEEEcC------CceEeeeehh
Confidence 6777666443 4588888875
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=85.23 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=81.1
Q ss_pred EEEeecccchhHHhhhhCCC-eEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCCcccceeeccccccccC
Q 006834 482 NVMDMNAYLGGFAAAMSKYP-VWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQ 556 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~-v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~ 556 (629)
+|||+|||+|.++.+|++.. - .+|+.+|.+..++..+.++ |+-..++ +...+...+.+||+|-++..|....
T Consensus 199 ~VLDlGcG~G~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~-~~d~~~~~~~~fD~Iv~~~~~~~g~ 275 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHSPK--IRLTLCDVSAPAVEASRATLAANGVEGEVF-ASNVFSEVKGRFDMIISNPPFHDGM 275 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHCTT--CBCEEEESBHHHHHHHHHHHHHTTCCCEEE-ECSTTTTCCSCEEEEEECCCCCSSS
T ss_pred eEEEecCccCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCEEE-EccccccccCCeeEEEECCCcccCc
Confidence 69999999999999997652 1 1344555554566666553 4422121 2223333358999999988875321
Q ss_pred --CCcCHHHHHHHHhhcccCCcEEEEEeCH--HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 557 --DRCDITNILLEMDRILRPEGTVIFRDTV--EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 557 --~~c~~~~~l~e~dRiLrPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
+.-..+.+|.++.|+|||||.+++.... .....++.+.... ...-.+ ..-+|+.++|.
T Consensus 276 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~~----~~~~~~----~gf~v~~~~k~ 337 (343)
T 2pjd_A 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFH----EVIAQT----GRFKVYRAIMT 337 (343)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSCC----EEEEEC----SSEEEEEEEC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCce----EEEeeC----CCEEEEEEEeC
Confidence 1224567999999999999999997543 2344555555532 222222 25678888774
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.6e-05 Score=79.82 Aligned_cols=142 Identities=11% Similarity=0.117 Sum_probs=84.1
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCCcccceee
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
-++|||+|||.|+++.++++. ++ ..|+-+|..+..+.++.+. ++ +.+++ |--+.+...+.+||+|-
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 467999999999999999887 55 2344444444677777653 23 22333 21111222358999998
Q ss_pred ccccccccCC-CcCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCCeEEEeecC--CCCCCCceEEEE
Q 006834 548 ASGVFSIYQD-RCDITNILLEMDRILRPEGTVIFRDT-----VEMLVKIRSITEGMRWKSQIMDHE--SGPFNPEKILFA 619 (629)
Q Consensus 548 ~~~~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~e--~~~~~~e~~l~~ 619 (629)
++........ .-....++.++-|+|+|||.+++... .+....+.+.++..=-.+..+... .-+.+...+++|
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~a 233 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIG 233 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEEe
Confidence 8543322111 11136789999999999999999731 334445555555543344433221 111234678889
Q ss_pred Eecc
Q 006834 620 AKTY 623 (629)
Q Consensus 620 ~K~~ 623 (629)
.|++
T Consensus 234 sk~~ 237 (275)
T 1iy9_A 234 SKKY 237 (275)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 8864
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=7.5e-06 Score=94.91 Aligned_cols=101 Identities=12% Similarity=0.209 Sum_probs=71.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----------cc--cceeccccccCCCCCcccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----------GL--IGTYQDWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----------gl--i~~~~~~~e~f~~yp~t~Dl~H~ 548 (629)
..|||+|||.|.++.+|++..--.-.|+.+|.++.++..+.+| |+ |..++.=.+.+..-..+||+|.+
T Consensus 723 ~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV~ 802 (950)
T 3htx_A 723 STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTC 802 (950)
T ss_dssp SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEEE
Confidence 4699999999999999998751113566677777888888762 44 33444212233333389999999
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
..+|....+. ....++.|+-|+|||| .+||+.+
T Consensus 803 ~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 803 LEVIEHMEED-QACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred eCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEec
Confidence 8888765432 2346899999999999 8888753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.4e-05 Score=80.38 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=62.5
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCC------Cccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTY------PRTY 543 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~y------p~t~ 543 (629)
++|||+|||.|.++..|++. +. .|+.+|.++.++.++.++ |+ |.+.+ |..+..... +.+|
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 47999999999999988753 22 344445554666666543 55 33333 222322223 5789
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|+|-+++- .-+...++.++-|+|||||.+++.+
T Consensus 158 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 99887532 2356789999999999999999864
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.2e-06 Score=83.90 Aligned_cols=129 Identities=12% Similarity=0.204 Sum_probs=85.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCccc---ceeeccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTY---DLIHASG 550 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~---Dl~H~~~ 550 (629)
+|||+|||.|.++.+|++.+- .+|+.+|.++..+.++.++ |+ +.+++ ||.+. .+.+| |+|-++-
T Consensus 126 ~vLDlG~GsG~~~~~la~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~~~~f~~~D~IvsnP 200 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMILSNP 200 (284)
T ss_dssp EEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEEECC
T ss_pred EEEEEeCchhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---cccccCCCCEEEEcC
Confidence 699999999999999987622 2455666666777776654 55 44444 55443 34689 9998862
Q ss_pred cccc----------cC------CCcCHHHHHHHHh-hcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEEEeecCCCCCCC
Q 006834 551 VFSI----------YQ------DRCDITNILLEMD-RILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQIMDHESGPFNP 613 (629)
Q Consensus 551 ~fs~----------~~------~~c~~~~~l~e~d-RiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~ 613 (629)
-+.. +. ..++-..++.++- +.|+|||++++.-..+....+.+++... ....|.. +.
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~----g~ 273 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSA----GK 273 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTT----SS
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccC----CC
Confidence 2111 11 1122236899999 9999999999976666666777776665 2333333 46
Q ss_pred ceEEEEEec
Q 006834 614 EKILFAAKT 622 (629)
Q Consensus 614 e~~l~~~K~ 622 (629)
+++++++++
T Consensus 274 ~R~~~~~~k 282 (284)
T 1nv8_A 274 YRFLLLNRR 282 (284)
T ss_dssp EEEEEEECC
T ss_pred ceEEEEEEc
Confidence 888888775
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=79.14 Aligned_cols=109 Identities=16% Similarity=0.233 Sum_probs=75.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCC-C-cccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTY-P-RTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~y-p-~t~D 544 (629)
+..+. +|||+|||.|.++.+|++.+ .+|+.+|.++..+..+.++ |+ +...+ |+.+ .. + ..||
T Consensus 89 ~~~~~--~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D 160 (248)
T 2yvl_A 89 LNKEK--RVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD---AEVPEGIFH 160 (248)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT---SCCCTTCBS
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh---cccCCCccc
Confidence 44443 69999999999999998762 3566667666788877765 43 23332 3322 22 3 6899
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCe
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWK 600 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~ 600 (629)
+|-+ +--+...+|.++-|+|||||.+++... .+....+...++.. |.
T Consensus 161 ~v~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 161 AAFV--------DVREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp EEEE--------CSSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred EEEE--------CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 9876 223456789999999999999999877 44556666665554 44
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.9e-06 Score=85.48 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=56.0
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCC--CCchHHHHhhcc-cceeccccccCCCC-Ccccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSN--PDTLGAIYERGL-IGTYQDWCEAFSTY-PRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~--~~~l~~~~ergl-i~~~~~~~e~f~~y-p~t~Dl~H~~~~fs~~ 555 (629)
..|||+|||.|+|+..|+++ .|+.+-+.|.... .+.+. ....|. +-++++ +..+..+ +.+||+|-|+..+...
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~-~~~~~~~v~~~~~-~~D~~~l~~~~fD~Vvsd~~~~~~ 161 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRL-VETFGWNLITFKS-KVDVTKMEPFQADTVLCDIGESNP 161 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCCTTGGGEEEEC-SCCGGGCCCCCCSEEEECCCCCCS
T ss_pred CEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhh-hhhcCCCeEEEec-cCcHhhCCCCCcCEEEECCCcCCC
Confidence 46999999999999999876 5666666663100 00000 000011 122200 1222234 4899999986552211
Q ss_pred CCCcCH---HHHHHHHhhcccCCc--EEEEE
Q 006834 556 QDRCDI---TNILLEMDRILRPEG--TVIFR 581 (629)
Q Consensus 556 ~~~c~~---~~~l~e~dRiLrPgG--~~i~~ 581 (629)
...-+. ..+|.++.|+||||| .|++.
T Consensus 162 ~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 162 TAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred chhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 100000 127889999999999 99985
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.2e-05 Score=83.73 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=60.8
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCCCCC--
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSKRLP-- 281 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~~Lp-- 281 (629)
+.+.+.+.+...++. +|||+|||+|.++..++++.. ...++++|.++.+++.|+++. .++.+.++|...++
T Consensus 14 Ll~e~l~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 14 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL 90 (301)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 355556666554444 899999999999999999853 235677799999999999763 45777777776654
Q ss_pred CC---CCCeeEEEecC
Q 006834 282 YP---ARAFDMAHCSG 294 (629)
Q Consensus 282 ~p---d~sFDlV~~s~ 294 (629)
+. .++||.|++..
T Consensus 91 l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHTTCSCEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcC
Confidence 11 14688887644
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.1e-05 Score=81.60 Aligned_cols=141 Identities=15% Similarity=0.090 Sum_probs=82.1
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc------c----cceec-cccccCCC-CCccccee
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG------L----IGTYQ-DWCEAFST-YPRTYDLI 546 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg------l----i~~~~-~~~e~f~~-yp~t~Dl~ 546 (629)
-++|||+|||.|+++..|++. ++ .+|+-+|..+..+..+.++- + +.++. |..+-... -+.+||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 357999999999999999876 34 34445555556777766542 1 22332 22221112 24789999
Q ss_pred eccccccccCCCcC-HHHHHHHHhhcccCCcEEEEEeCH-----HHHHHHHHHHhcCCCeE-EEeec--CCCCCCCceEE
Q 006834 547 HASGVFSIYQDRCD-ITNILLEMDRILRPEGTVIFRDTV-----EMLVKIRSITEGMRWKS-QIMDH--ESGPFNPEKIL 617 (629)
Q Consensus 547 H~~~~fs~~~~~c~-~~~~l~e~dRiLrPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~-~~~~~--e~~~~~~e~~l 617 (629)
-++.........-. -..++.++-|+|||||.+++.... .....+.+.++...+.. ..+.. ..-+.+.-.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~ 253 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTL 253 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEE
Confidence 88544322111111 157899999999999999996322 34455555555554543 33322 11122455688
Q ss_pred EEEec
Q 006834 618 FAAKT 622 (629)
Q Consensus 618 ~~~K~ 622 (629)
+|.|.
T Consensus 254 ~as~~ 258 (304)
T 3bwc_A 254 VCSKK 258 (304)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 88885
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=4.5e-07 Score=89.70 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=66.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.+|||+|||.|+++.+|++.+ ..|+.+|.++.++..+.++ |+ +.+++ |+.+ +. -+.+||+|.++..|
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCCC
T ss_pred CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCCc
Confidence 359999999999999999886 3566677776777776554 43 33343 2222 22 23799999998877
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
...... ...+.|+.|+|+|||.+++..
T Consensus 155 ~~~~~~---~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPDYA---TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence 643322 236678999999999987764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2.2e-05 Score=81.20 Aligned_cols=141 Identities=12% Similarity=0.045 Sum_probs=80.5
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCCcccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp~t~Dl~H~ 548 (629)
++|||+|||.|+++.+|++. ++ .+|+.+|.++..+..+.++ ++ +.+++ |..+.....+.+||+|-+
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 67999999999999999987 44 3455555555677776653 22 22232 222222234588999887
Q ss_pred ccccc-ccC-CCcCHHHHHHHHhhcccCCcEEEEEeC-----HHHHHHHHHHHhcCCCeEEEeec--CCCCCCCceEEEE
Q 006834 549 SGVFS-IYQ-DRCDITNILLEMDRILRPEGTVIFRDT-----VEMLVKIRSITEGMRWKSQIMDH--ESGPFNPEKILFA 619 (629)
Q Consensus 549 ~~~fs-~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~--e~~~~~~e~~l~~ 619 (629)
+..-. ... ..-....++.++-|+|+|||.+++... .+....+.+.++..--.+..+.. ..-|.+...+++|
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~a 249 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFA 249 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEEe
Confidence 53211 100 000226789999999999999999621 22333333333333233443321 1112235678889
Q ss_pred Eecc
Q 006834 620 AKTY 623 (629)
Q Consensus 620 ~K~~ 623 (629)
.|++
T Consensus 250 s~~~ 253 (296)
T 1inl_A 250 SKGI 253 (296)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 8874
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5.1e-05 Score=86.27 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=67.0
Q ss_pred CCeEEEeCCCCchH---HHHHHHcCCcEeEEEeecCcHHHHHHHHH----cC--CCeEEEEecCCCCCCCCCCeeEEEe-
Q 006834 223 IRTAVDTGCGVASW---GAYLLKRDILTMSFARRDTHEAQVQFALE----RG--VPAMIGVISSKRLPYPARAFDMAHC- 292 (629)
Q Consensus 223 ~~~VLDIGCGtG~~---a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg--~~~~~~v~d~~~Lp~pd~sFDlV~~- 292 (629)
...|||||||+|-+ +...++++...+.++++|-++. ...|++ ++ ..++++.++.+.+..| +++|+|++
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 45799999999977 5555555555567888899974 444543 22 4588999999988766 68999998
Q ss_pred --cCcccccccCHHHHHHHHHhcccCCcEEE
Q 006834 293 --SGCLIPWYMYDGLYLLEVDRVLRPGGYWI 321 (629)
Q Consensus 293 --s~~L~h~~~d~~~~L~el~RvLKPGG~li 321 (629)
..++ ..+.-...|....|.|||||.++
T Consensus 436 wMG~fL--l~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFA--DNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTB--GGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cCcccc--cccCCHHHHHHHHHhcCCCcEEc
Confidence 2222 11122257788899999999874
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.6e-05 Score=81.71 Aligned_cols=140 Identities=18% Similarity=0.203 Sum_probs=83.1
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCCcccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp~t~Dl~H~ 548 (629)
++|||+|||.|+++.++++. ++ .+|+.+|.++..+.++.++ |+ +.+++ |..+.....+.+||+|-+
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 57999999999999999887 44 3455556665677777664 22 22232 322222223588999987
Q ss_pred cccccccCCCcC--HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCeEEEeecC--CCCCCCceEEEE
Q 006834 549 SGVFSIYQDRCD--ITNILLEMDRILRPEGTVIFRD-----TVEMLVKIRSITEGMRWKSQIMDHE--SGPFNPEKILFA 619 (629)
Q Consensus 549 ~~~fs~~~~~c~--~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~~~~~~e--~~~~~~e~~l~~ 619 (629)
+.. ......-. -..++.++-|+|||||.+++.. ..+.+..+.+.++..--.+..+... ..+.+.-.+++|
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~a 274 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCC 274 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEEe
Confidence 542 21111111 1688999999999999999953 2233444444454443444433211 111123457788
Q ss_pred Eecc
Q 006834 620 AKTY 623 (629)
Q Consensus 620 ~K~~ 623 (629)
.|.+
T Consensus 275 s~~~ 278 (321)
T 2pt6_A 275 SKTD 278 (321)
T ss_dssp ESST
T ss_pred eCCC
Confidence 8864
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.8e-05 Score=83.50 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=66.5
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCC-ccccee
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYP-RTYDLI 546 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp-~t~Dl~ 546 (629)
-++|||+|||.|+++..|++. ++ .+|+.+|.++..+.++.++ |+ +-+++ |+.+.+..++ .+||+|
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 468999999999999999987 34 3455556665677777654 33 23333 3333233344 789999
Q ss_pred eccccccccCCCc-CHHHHHHHHhhcccCCcEEEEE
Q 006834 547 HASGVFSIYQDRC-DITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 547 H~~~~fs~~~~~c-~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
-++..-....... ....++.++-|+|||||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 8854311111111 1367999999999999999996
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=78.09 Aligned_cols=98 Identities=8% Similarity=0.048 Sum_probs=67.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCCcccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
.+|||+|||+|.++.+++.++. -.|+.+|.++.++..+.++ |+ +.+++ |..+.....+.+||+|-++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 3699999999999998776653 2567778777788877653 43 33444 33222233347899998876654
Q ss_pred ccCCCcCHHHHHHHHh--hcccCCcEEEEEeCH
Q 006834 554 IYQDRCDITNILLEMD--RILRPEGTVIFRDTV 584 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~d--RiLrPgG~~i~~d~~ 584 (629)
.-..+.++.++. |+|||||.+++....
T Consensus 134 ----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 ----RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp ----TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred ----CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 235667888885 479999999997654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.6e-05 Score=84.78 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=86.2
Q ss_pred HHHHHHHHhhcCcc--CCCCCeEEEeCCCCchHHHHHHHcC--CcEeEEEeecCcHHHHHHHHHc----CC---CeEEEE
Q 006834 206 DAYIDNINELIPLT--GGNIRTAVDTGCGVASWGAYLLKRD--ILTMSFARRDTHEAQVQFALER----GV---PAMIGV 274 (629)
Q Consensus 206 ~~~i~~I~~lL~~~--~g~~~~VLDIGCGtG~~a~~La~~g--~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v 274 (629)
...++.+.+++... +..+.+|||.+||+|.+...+++.- .....++|+|+++.+++.|+.+ +. +..+..
T Consensus 203 ~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~ 282 (542)
T 3lkd_A 203 QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHN 282 (542)
T ss_dssp HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEe
Confidence 44566777766532 2234589999999999988887762 1134678999999999999853 44 467888
Q ss_pred ecCCCC--C-CCCCCeeEEEecCcccc-ccc--------------------C-HHHHHHHHHhccc-CCcEEEEEeCC
Q 006834 275 ISSKRL--P-YPARAFDMAHCSGCLIP-WYM--------------------Y-DGLYLLEVDRVLR-PGGYWILSGPP 326 (629)
Q Consensus 275 ~d~~~L--p-~pd~sFDlV~~s~~L~h-~~~--------------------d-~~~~L~el~RvLK-PGG~liis~P~ 326 (629)
+|.... | .....||+|+++.-+.. |.. + .-.++..+.+.|+ |||++.+..|.
T Consensus 283 gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 283 ADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp SCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred cceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 887665 3 34678999999754421 100 0 1248999999999 99999998874
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.81 E-value=3.3e-05 Score=78.35 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=76.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-cc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RT 542 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t 542 (629)
+.++. +|||+|||.|.++.+|++. .. +|+.+|.++..+..+.++ |+ +..++ |+.+. +| .+
T Consensus 110 ~~~~~--~VLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 181 (277)
T 1o54_A 110 VKEGD--RIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKD 181 (277)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCS
T ss_pred CCCCC--EEEEECCcCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCCc
Confidence 44444 6999999999999998765 22 455566666777777665 54 33333 33332 45 68
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeE
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKS 601 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~ 601 (629)
||+|-++ --+...+|.++.|+|||||.+++.+.. +.+.++.+.+....|..
T Consensus 182 ~D~V~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 182 VDALFLD--------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp EEEEEEC--------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred cCEEEEC--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 9998762 123457899999999999999998773 45566666666666653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.79 E-value=2e-05 Score=82.36 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=59.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-C--eEEEEecCCCCCCCchHHHHhhc-----------------ccceec-ccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-P--VWVMNVVPFHSNPDTLGAIYERG-----------------LIGTYQ-DWC 533 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~--v~~mnv~~~~~~~~~l~~~~erg-----------------li~~~~-~~~ 533 (629)
+.++. +|||+|||.|.++.+|++. + . .|+.+|..+..+..+.++. -+.+++ |..
T Consensus 103 ~~~g~--~VLDiG~G~G~~~~~la~~~g~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~ 177 (336)
T 2b25_A 103 INPGD--TVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS 177 (336)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred CCCCC--EEEEeCCCcCHHHHHHHHHhCCCc---eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChH
Confidence 44554 6999999999999999764 2 2 2334455556666665531 133333 333
Q ss_pred ccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 534 EAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 534 e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+....++ .+||+|.++. .....+|.++.|+|||||.+++...
T Consensus 178 ~~~~~~~~~~fD~V~~~~--------~~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 178 GATEDIKSLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp CCC-------EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred HcccccCCCCeeEEEECC--------CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3322445 6899988732 1223378999999999999998754
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.79 E-value=2.9e-05 Score=81.16 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=62.0
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCCcccceee
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
-++|||+|||.|+++..|++. ++ .+|+-+|..+..+.++.++ |+ +.+++ |..+.+..-+.+||+|-
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESV--EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTC--CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 367999999999999999887 34 3455556665677777664 33 22222 22221222357899998
Q ss_pred ccccccccCCCcCH-HHHHHHHhhcccCCcEEEEEe
Q 006834 548 ASGVFSIYQDRCDI-TNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 548 ~~~~fs~~~~~c~~-~~~l~e~dRiLrPgG~~i~~d 582 (629)
++.........-.. ..++.++-|+|||||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 75421111111112 678999999999999999963
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.79 E-value=7.4e-05 Score=86.53 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=71.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCC--cEeEEEeecCcHHHHHHH--HHc--------CCC-eEEEEecCCCC-CCCCCCee
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDI--LTMSFARRDTHEAQVQFA--LER--------GVP-AMIGVISSKRL-PYPARAFD 288 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~--~~v~i~gvDiS~~~i~~A--~er--------g~~-~~~~v~d~~~L-p~pd~sFD 288 (629)
+.+|||.|||+|.++..++++.. ....++|+|+++.+++.| +.. +.. ..+...+.... +...+.||
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 45899999999999999987642 123578889999999998 322 222 23433333332 23457899
Q ss_pred EEEecCcccccccC----------------------------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 289 MAHCSGCLIPWYMY----------------------------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 289 lV~~s~~L~h~~~d----------------------------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+|+++.-+...... ...++..+.+.|+|||++.+..|..
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 99998766321101 1236788999999999999998743
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=84.10 Aligned_cols=102 Identities=15% Similarity=0.155 Sum_probs=71.3
Q ss_pred CCeEEEeCCCCchHHHHHHHc---------------CCcEeEEEeecCcHHHHHHHHHcCC------CeEEEEecC---C
Q 006834 223 IRTAVDTGCGVASWGAYLLKR---------------DILTMSFARRDTHEAQVQFALERGV------PAMIGVISS---K 278 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~---------------g~~~v~i~gvDiS~~~i~~A~erg~------~~~~~v~d~---~ 278 (629)
.-+|+|+||++|..+..+... ....+.+...|+..+.....-+.-. +..|..+.. .
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 457999999999777665544 2335567777877766665544311 224444332 3
Q ss_pred CCCCCCCCeeEEEecCcccccccC-H--------------------------------HHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMY-D--------------------------------GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d-~--------------------------------~~~L~el~RvLKPGG~liis~P 325 (629)
.-.||++++|+|+++.+| ||..+ + ..+|+...+.|+|||.++++..
T Consensus 132 ~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 346899999999999999 78644 2 1248888999999999999864
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.3e-05 Score=82.82 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=72.6
Q ss_pred HHHHHHHHhhc---ccCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhhcc---cceecccc
Q 006834 463 DRMTYYKKIDG---LFHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYERGL---IGTYQDWC 533 (629)
Q Consensus 463 ~~v~~y~~~~~---~~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~ergl---i~~~~~~~ 533 (629)
.|...|.+.+. .+..++ +|||+|||+|.++-..++. .|+.+-..+. . .....++.+.|+ |.+++.--
T Consensus 66 ~Rt~aY~~Ai~~~~~~~~~k--~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~-~-~~a~~~~~~n~~~~~i~~i~~~~ 141 (376)
T 4hc4_A 66 VRTDAYRLGILRNWAALRGK--TVLDVGAGTGILSIFCAQAGARRVYAVEASAI-W-QQAREVVRFNGLEDRVHVLPGPV 141 (376)
T ss_dssp HHHHHHHHHHHTTHHHHTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-H-HHHHHHHHHTTCTTTEEEEESCT
T ss_pred HHHHHHHHHHHhCHHhcCCC--EEEEeCCCccHHHHHHHHhCCCEEEEEeChHH-H-HHHHHHHHHcCCCceEEEEeeee
Confidence 44556766542 233455 4999999999876554443 4665544331 1 124455556677 55665333
Q ss_pred ccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 534 EAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 534 e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+.+ ..|..+|+|=+.-+-+.......++.++...||+|+|||.+|..
T Consensus 142 ~~~-~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 142 ETV-ELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTC-CCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred eee-cCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 333 35788999877444444445567899999999999999998863
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.9e-05 Score=72.12 Aligned_cols=135 Identities=18% Similarity=0.195 Sum_probs=67.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-C------------eEEEEecCCCCCCCchHHHHhhccccee-c-ccccc-C--
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-P------------VWVMNVVPFHSNPDTLGAIYERGLIGTY-Q-DWCEA-F-- 536 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~------------v~~mnv~~~~~~~~~l~~~~ergli~~~-~-~~~e~-f-- 536 (629)
+.++ .+|||+|||.|.++.+|++. + |+.+-+.+... + .+ +-.+ + |..+. +
T Consensus 20 ~~~~--~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~----~-----~~-~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 20 LRPG--LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP----L-----EG-ATFLCPADVTDPRTSQ 87 (196)
T ss_dssp CCTT--CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC----C-----TT-CEEECSCCTTSHHHHH
T ss_pred CCCC--CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc----C-----CC-CeEEEeccCCCHHHHH
Confidence 4554 36999999999999999765 2 34433333210 0 01 1112 1 11110 0
Q ss_pred ---CCCC-cccceeeccccccccCCC--------cCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEE
Q 006834 537 ---STYP-RTYDLIHASGVFSIYQDR--------CDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQI 603 (629)
Q Consensus 537 ---~~yp-~t~Dl~H~~~~fs~~~~~--------c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~ 603 (629)
..++ ++||+|-++..+...... ...+.+|.++-|+|||||.+++.+.. +....+...++..--++.+
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~ 167 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRI 167 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEE
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEE
Confidence 1134 589999886644321111 11146899999999999999998432 1222333333332112222
Q ss_pred ee-cCCCCCCCceEEEEEe
Q 006834 604 MD-HESGPFNPEKILFAAK 621 (629)
Q Consensus 604 ~~-~e~~~~~~e~~l~~~K 621 (629)
+. ....+...|..+++..
T Consensus 168 ~~~~~~~~~~~e~~~v~~g 186 (196)
T 2nyu_A 168 IKPEASRKESSEVYFLATQ 186 (196)
T ss_dssp ECCC--------EEEEEEE
T ss_pred ECCcccCccCceEEEEeee
Confidence 22 1122234677777764
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-05 Score=84.10 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=75.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc----cceeccccccCCC-C---Ccccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL----IGTYQDWCEAFST-Y---PRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl----i~~~~~~~e~f~~-y---p~t~Dl~H~ 548 (629)
..|||+|||+|+|+.++++.+. .|+.+|.++..+..+.+. |+ +.+++.=+..+.. . ..+||+|-+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 3699999999999999998875 677778877777776654 44 2333311111111 1 358999877
Q ss_pred ccc-ccccC------CCcCHHHHHHHHhhcccCCcEEEEEeC-------HHHHHHHHHHHhcCCCeEE
Q 006834 549 SGV-FSIYQ------DRCDITNILLEMDRILRPEGTVIFRDT-------VEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 549 ~~~-fs~~~------~~c~~~~~l~e~dRiLrPgG~~i~~d~-------~~~~~~~~~~~~~l~w~~~ 602 (629)
+-- |.... ..-+...++.++-|+|+|||.+++... ......+++.+.....++.
T Consensus 232 dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 232 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred CCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 433 22111 112356789999999999999887532 2234455556666666654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.5e-05 Score=77.81 Aligned_cols=128 Identities=12% Similarity=0.174 Sum_probs=78.8
Q ss_pred eEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHh----hcc---cceec-cccccCCCC------Cccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYE----RGL---IGTYQ-DWCEAFSTY------PRTY 543 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~e----rgl---i~~~~-~~~e~f~~y------p~t~ 543 (629)
++|||+|||.|..+.+|++. +- .|+.+|.++..+.++.+ .|+ |.+++ |..+.+... +.+|
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 47999999999999988753 22 33444555456666644 365 33333 333332333 4789
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------------HHHHHHHH----HHhcCCCeEE
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-----------------EMLVKIRS----ITEGMRWKSQ 602 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------------~~~~~~~~----~~~~l~w~~~ 602 (629)
|+|.+++- .-....++.++-|+|||||.+++.+-. .....|++ +...=++.+.
T Consensus 149 D~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~ 222 (237)
T 3c3y_A 149 DFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIV 222 (237)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred CEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 99987532 224578999999999999999996410 01223333 3444455555
Q ss_pred EeecCCCCCCCceEEEEEecc
Q 006834 603 IMDHESGPFNPEKILFAAKTY 623 (629)
Q Consensus 603 ~~~~e~~~~~~e~~l~~~K~~ 623 (629)
+.-. ...+++++|.+
T Consensus 223 ~lp~------~dG~~~~~~~~ 237 (237)
T 3c3y_A 223 HLPL------GDGITFCRRLY 237 (237)
T ss_dssp EECS------TTCEEEEEECC
T ss_pred EEEe------CCceEEEEEcC
Confidence 5433 35688998863
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.6e-05 Score=82.95 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=73.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCCccccee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYPRTYDLI 546 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp~t~Dl~ 546 (629)
+.++. .|||+|||.|+++.+|++. +- -.|+.+|.++..+..+.++ |+ +-+++.=...+..++.+||+|
T Consensus 116 ~~~g~--~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~I 191 (315)
T 1ixk_A 116 PKPGE--IVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKI 191 (315)
T ss_dssp CCTTC--EEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEE
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEE
Confidence 44444 5999999999999999853 11 1345556665677776665 55 333331122333345789999
Q ss_pred eccccccccC---CCc---------C-------HHHHHHHHhhcccCCcEEEEEe----CHHHHHHHHHHHhcCCCe
Q 006834 547 HASGVFSIYQ---DRC---------D-------ITNILLEMDRILRPEGTVIFRD----TVEMLVKIRSITEGMRWK 600 (629)
Q Consensus 547 H~~~~fs~~~---~~c---------~-------~~~~l~e~dRiLrPgG~~i~~d----~~~~~~~~~~~~~~l~w~ 600 (629)
-++--.|... ..- + ...+|.++-|+|||||.++++. ..+....++.+++...++
T Consensus 192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 8754332111 000 0 1468999999999999999952 223334456666655443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=5.5e-06 Score=81.01 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=58.5
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc-------cceec-cccccCCCCCcccceee
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL-------IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl-------i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
.+|||+|||.|.++..|++. +- ..+|+.+|.++..+..+.++ |+ +.+.+ |..+.+ .-+..||+|+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i~ 156 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGC-TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAPYDAIH 156 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCCEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-ccCCCcCEEE
Confidence 36999999999999998764 10 01344445555666666543 21 23332 322111 1136899999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
++..+ +.++.++-|+|||||.+++...
T Consensus 157 ~~~~~---------~~~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 157 VGAAA---------PVVPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp ECSBB---------SSCCHHHHHTEEEEEEEEEEES
T ss_pred ECCch---------HHHHHHHHHhcCCCcEEEEEEe
Confidence 86655 2345788999999999999754
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00016 Score=74.86 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----------CCCeEEEEec
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----------GVPAMIGVIS 276 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----------g~~~~~~v~d 276 (629)
.|-+.+....-.....+++||=||.|.|..++++++... +..++.+|++++.++.|++. .+++.+...|
T Consensus 68 ~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~D 146 (294)
T 3o4f_A 68 IYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDD 146 (294)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEech
Confidence 344444432222233467999999999999999998742 23567789999999999863 2468888888
Q ss_pred CCCC-CCCCCCeeEEEecCccccccc----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRL-PYPARAFDMAHCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~L-p~pd~sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~ 324 (629)
.... .-..++||+|+.-.. .+... ....+++.+.++|+|||.++...
T Consensus 147 g~~~l~~~~~~yDvIi~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 147 GVNFVNQTSQTFDVIISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp TTTTTSCSSCCEEEEEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHhhccccCCEEEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 7654 344678999996321 11111 12479999999999999999854
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.8e-05 Score=81.57 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
....+.|||+|||+|.++.+|++. ++-+ +-.|.+ .++..+.++.-|.... ...|.++|.. |++.+..++-.
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~-~~~~~a~~~~~v~~~~--~d~~~~~p~~-D~v~~~~vlh~ 273 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINA---INFDLP-HVIQDAPAFSGVEHLG--GDMFDGVPKG-DAIFIKWICHD 273 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECH-HHHTTCCCCTTEEEEE--CCTTTCCCCC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEE---EEEehH-HHHHhhhhcCCCEEEe--cCCCCCCCCC-CEEEEechhhc
Confidence 455678999999999999999763 3322 222222 3333333322233222 1233457755 99998887765
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
+.+. +...+|.++-|+|||||.++|.|
T Consensus 274 ~~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 274 WSDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp BCHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 5432 34579999999999999999975
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.2e-05 Score=85.22 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=62.7
Q ss_pred CCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeecccccccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.....|||+|||.|.++.+|+++ ++.+. ..|.+ .++..+.+..-+.... +..+..+|. ||++.+..++..+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~---~~D~~-~~~~~a~~~~~v~~~~--~d~~~~~~~-~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGI---NFDLP-QVIENAPPLSGIEHVG--GDMFASVPQ-GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECH-HHHTTCCCCTTEEEEE--CCTTTCCCC-EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEE---EeChH-HHHHhhhhcCCCEEEe--CCcccCCCC-CCEEEEecccccC
Confidence 34568999999999999999865 33322 22321 3443333211122222 122334666 9999998887655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+. ....+|.++-|+|||||.++|.|
T Consensus 281 ~d~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 281 SDE-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 432 23489999999999999999974
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=79.45 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=66.8
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH-------c----C---CCeEEEEe
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE-------R----G---VPAMIGVI 275 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e-------r----g---~~~~~~v~ 275 (629)
+.+.+.+...++...+|||+|||+|..+..++.++.. ++++|.++.+.+.+++ + + .++.+..+
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 3455555555442248999999999999999999765 4566999976444432 1 1 24778888
Q ss_pred cCCC-CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCc
Q 006834 276 SSKR-LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGG 318 (629)
Q Consensus 276 d~~~-Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG 318 (629)
|... ++....+||+|++...+.+ . ....++++..++|++.+
T Consensus 153 D~~~~L~~~~~~fDvV~lDP~y~~-~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 153 SSLTALTDITPRPQVVYLDPMFPH-K-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCCC-C-CC-----HHHHHHHHHS
T ss_pred CHHHHHHhCcccCCEEEEcCCCCC-c-ccchHHHHHHHHHHHhh
Confidence 8655 3422347999999887743 3 23356777778887755
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.2e-05 Score=75.99 Aligned_cols=89 Identities=18% Similarity=0.141 Sum_probs=60.5
Q ss_pred eEEEeecccchhHHhhhhCCC---eEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCC--cccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYP---VWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYP--RTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~---v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp--~t~Dl~H~ 548 (629)
.+|||+|||.|.++..|++.. . +|+.+|.++..+..+.++ |+ +...+ |. ...+| ..||+|.+
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~ 152 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG---TLGYEPLAPYDRIYT 152 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCG---GGCCGGGCCEEEEEE
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCCCCCeeEEEE
Confidence 369999999999999987642 2 334445555677777665 33 22222 22 22333 68999998
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
..++.... .++-|+|||||.+++....
T Consensus 153 ~~~~~~~~---------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 153 TAAGPKIP---------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred CCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence 77665322 4889999999999997654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.5e-05 Score=83.89 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=63.1
Q ss_pred CeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccccC
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQ 556 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~ 556 (629)
...+|||+|||.|.++.+|+++ ++- ++..|. +.++..+.+..-+.... ...|..+|. ||++.+..++..+.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~-~~~~~~a~~~~~v~~~~--~d~~~~~p~-~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLK---CIVFDR-PQVVENLSGSNNLTYVG--GDMFTSIPN-ADAVLLKYILHNWT 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHTTCCCBTTEEEEE--CCTTTCCCC-CSEEEEESCGGGSC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCe---EEEeeC-HHHHhhcccCCCcEEEe--ccccCCCCC-ccEEEeehhhccCC
Confidence 3468999999999999999864 322 222333 23444333321122222 122345665 99999988887664
Q ss_pred CCcCHHHHHHHHhhcccC---CcEEEEEeC
Q 006834 557 DRCDITNILLEMDRILRP---EGTVIFRDT 583 (629)
Q Consensus 557 ~~c~~~~~l~e~dRiLrP---gG~~i~~d~ 583 (629)
+. ....+|.++-|+||| ||.++|.|.
T Consensus 261 d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 261 DK-DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HH-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 32 234899999999999 999999753
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.2e-05 Score=85.04 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=73.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhC-CCeEEEEecCCCCCCCchHHHHh-----------hcc----cceeccccccCCC
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNPDTLGAIYE-----------RGL----IGTYQDWCEAFST 538 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~e-----------rgl----i~~~~~~~e~f~~ 538 (629)
+..+. +|||+|||+|.++..|+. .+. -.|+.+|.++.++.++.+ .|+ |.+++ ..|..
T Consensus 171 l~~gd--~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~---GD~~~ 243 (438)
T 3uwp_A 171 MTDDD--LFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER---GDFLS 243 (438)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE---CCTTS
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE---CcccC
Confidence 55555 499999999999988764 343 135566666556666544 244 33333 55555
Q ss_pred CC-----cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHH------HHHHHHHHhcCCCe
Q 006834 539 YP-----RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEM------LVKIRSITEGMRWK 600 (629)
Q Consensus 539 yp-----~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~------~~~~~~~~~~l~w~ 600 (629)
.| ..||+|-++.++ + .-++...|.|+.|+|||||.||+.+.... -..+..+...|++.
T Consensus 244 lp~~d~~~~aDVVf~Nn~~-F---~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~v~ 312 (438)
T 3uwp_A 244 EEWRERIANTSVIFVNNFA-F---GPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVV 312 (438)
T ss_dssp HHHHHHHHTCSEEEECCTT-C---CHHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEEEE
T ss_pred CccccccCCccEEEEcccc-c---CchHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhheee
Confidence 44 368887775442 1 13567788999999999999999865421 12345566666654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00018 Score=69.01 Aligned_cols=116 Identities=12% Similarity=0.081 Sum_probs=79.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceeccccccCCCCCcccceeecccccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
.+|||+|||.|.++.+|++.+. -+|+.+|.++..+..+.++ |+ +.+++ ..+..+|.+||+|-++..|...
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFI---GDVSEFNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEE---SCGGGCCCCCSEEEECCCCSSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEE---CchHHcCCCCCEEEEcCCCccc
Confidence 4699999999999999988753 2455666665677776665 32 23333 4444567899999998877655
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEEEE-eCHHHHHHHHHHHhcCCCeEEEe
Q 006834 556 QDRCDITNILLEMDRILRPEGTVIFR-DTVEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~~ 604 (629)
... ....++.++-|+| ||.+++. .+......+.+++....|++..+
T Consensus 126 ~~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 126 RKH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp STT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cCC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 433 3356788899999 6655544 26666777888888777776543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.68 E-value=5.3e-05 Score=76.41 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=71.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh-----c-c---cceec-cccccCCCCC-
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER-----G-L---IGTYQ-DWCEAFSTYP- 540 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er-----g-l---i~~~~-~~~e~f~~yp- 540 (629)
+.++. +|||+|||.|.++.+|++. .. +|..+|.++..+..+.++ | + +.+.+ |..+. .++
T Consensus 97 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~~~ 169 (280)
T 1i9g_A 97 IFPGA--RVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPD 169 (280)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCT
T ss_pred CCCCC--EEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CCCC
Confidence 44444 5999999999999999864 32 445556666777777665 4 2 33333 33322 233
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhc-CCC
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEG-MRW 599 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~-l~w 599 (629)
.+||+|-++ --+...+|.++.|+|||||.+++.... +.+.++...+.. ..|
T Consensus 170 ~~~D~v~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f 222 (280)
T 1i9g_A 170 GSVDRAVLD--------MLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCW 222 (280)
T ss_dssp TCEEEEEEE--------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSB
T ss_pred CceeEEEEC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 789998762 124457899999999999999997653 344444444433 444
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=1.3e-05 Score=83.30 Aligned_cols=97 Identities=20% Similarity=0.053 Sum_probs=62.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCCCcccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
+.++. +|||+|||.|.++..|++..----+|+.+|.++.++..+.++ |+ +.+.+ |..+ ...-+..||+|.
T Consensus 73 ~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD~Iv 149 (317)
T 1dl5_A 73 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY-GVPEFSPYDVIF 149 (317)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-CCGGGCCEEEEE
T ss_pred CCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh-ccccCCCeEEEE
Confidence 44443 699999999999999976411001234445555677777665 55 33332 2221 111127899999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+..++.... .++.|+|||||.+++...
T Consensus 150 ~~~~~~~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 150 VTVGVDEVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp ECSBBSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred EcCCHHHHH---------HHHHHhcCCCcEEEEEEC
Confidence 987775332 578899999999999754
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.65 E-value=2e-05 Score=76.82 Aligned_cols=139 Identities=11% Similarity=0.096 Sum_probs=91.4
Q ss_pred HHHhhcccCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhh----ccc-ceeccccccC-CCC
Q 006834 468 YKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYER----GLI-GTYQDWCEAF-STY 539 (629)
Q Consensus 468 y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~er----gli-~~~~~~~e~f-~~y 539 (629)
|......+.. -.+|||+|||+|.+|.++... .+ .+..+|-++.+++++.++ |+- .+-+ ++.. ...
T Consensus 40 Y~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a---~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~ 112 (200)
T 3fzg_A 40 YTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKI---IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY 112 (200)
T ss_dssp HHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCC---EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT
T ss_pred HHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC
Confidence 4443333433 447999999999999999665 34 566677777888888765 332 1222 2222 235
Q ss_pred CcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-----------HHHHHHHHHHhcCCCeEEEeecCC
Q 006834 540 PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-----------EMLVKIRSITEGMRWKSQIMDHES 608 (629)
Q Consensus 540 p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-----------~~~~~~~~~~~~l~w~~~~~~~e~ 608 (629)
|.+||++-+..++-...++ +..+.++-+.|||||.||--+.. ......+..+..=.|.+.-....
T Consensus 113 ~~~~DvVLa~k~LHlL~~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~- 188 (200)
T 3fzg_A 113 KGTYDVVFLLKMLPVLKQQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG- 188 (200)
T ss_dssp TSEEEEEEEETCHHHHHHT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET-
T ss_pred CCCcChhhHhhHHHhhhhh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC-
Confidence 5889987664444433222 34677999999999999987721 24667778888888887765543
Q ss_pred CCCCCceEEEEEe
Q 006834 609 GPFNPEKILFAAK 621 (629)
Q Consensus 609 ~~~~~e~~l~~~K 621 (629)
.|-+.|.+|
T Consensus 189 ----nEl~y~~~~ 197 (200)
T 3fzg_A 189 ----NELVYITSG 197 (200)
T ss_dssp ----TEEEEEECC
T ss_pred ----ceEEEEEec
Confidence 566766665
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=7.1e-05 Score=76.79 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=64.2
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCCcccceee
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
-++|||+|||.|+++..+++. ++ .+|+-+|..+..+..+.++ |+ +.+++ |..+.....+.+||+|-
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 368999999999999999877 34 3455555555677776654 11 12222 22111122368899998
Q ss_pred ccccccccCCCcCH--HHHHHHHhhcccCCcEEEEE
Q 006834 548 ASGVFSIYQDRCDI--TNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 548 ~~~~fs~~~~~c~~--~~~l~e~dRiLrPgG~~i~~ 581 (629)
++......... .+ ..++.++-|+|||||.+++.
T Consensus 157 ~d~~~~~~~~~-~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAE-TLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGG-GGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcch-hhhHHHHHHHHHHhcCCCcEEEEE
Confidence 86432221111 12 68999999999999999997
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.64 E-value=4.4e-05 Score=81.91 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=74.8
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-c---ceec-cccccCCCC---Ccccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-I---GTYQ-DWCEAFSTY---PRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i---~~~~-~~~e~f~~y---p~t~Dl~H~ 548 (629)
.+|||+|||+|+|+.++++.+. -.|+.+|.++..+..+.+. |+ - -+++ |..+..... ...||+|.+
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 3699999999999999998752 3455566665666665443 44 2 2222 211111111 358999998
Q ss_pred cccccc------cCCCcCHHHHHHHHhhcccCCcEEEEEeCH------HHHHHHHHHHhcCCCeEEEe
Q 006834 549 SGVFSI------YQDRCDITNILLEMDRILRPEGTVIFRDTV------EMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 549 ~~~fs~------~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------~~~~~~~~~~~~l~w~~~~~ 604 (629)
+--+.. .........++.++-++|+|||.+++.... +....+++.+.....+..+.
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 643211 112245678999999999999999996432 23455555555555444433
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.64 E-value=5.4e-05 Score=77.55 Aligned_cols=121 Identities=12% Similarity=-0.002 Sum_probs=72.7
Q ss_pred CCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH---cCCCeEEEEecC
Q 006834 201 FPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE---RGVPAMIGVISS 277 (629)
Q Consensus 201 f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e---rg~~~~~~v~d~ 277 (629)
|..++.+.+.+|.+.....++. +|||+|||.|.|+.+++++.. +.++.++|++..+...+.. .+.++.....+.
T Consensus 71 YrSRAAfKL~ei~eK~~Lk~~~--~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~ 147 (282)
T 3gcz_A 71 AVSRGSAKLRWMEERGYVKPTG--IVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT 147 (282)
T ss_dssp CSSTHHHHHHHHHHTTSCCCCE--EEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC
T ss_pred EecHHHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccccccCCCceEEeeCCc
Confidence 3444555555555554444444 899999999999999886542 3356678887543222111 022233333222
Q ss_pred CCCCCCCCCeeEEEecCccc---ccccCHH--HHHHHHHhcccCC--cEEEEEe
Q 006834 278 KRLPYPARAFDMAHCSGCLI---PWYMYDG--LYLLEVDRVLRPG--GYWILSG 324 (629)
Q Consensus 278 ~~Lp~pd~sFDlV~~s~~L~---h~~~d~~--~~L~el~RvLKPG--G~liis~ 324 (629)
.-..++.+.+|+|+|-.+.. ++.+... .+|.-+.++|+|| |.|++-.
T Consensus 148 dv~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 148 DVFNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp CGGGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred chhhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 32345678999999966653 1111111 2566667899999 9999975
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.5e-05 Score=86.34 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=63.4
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc---cceec-cccccCCCCCcccceeeccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL---IGTYQ-DWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
..|||+|||.|.++..|++.+. ..|+.+|.+. ++..+.+ .|+ |.+++ |+-+ + .+|..||+|-++.++
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPMG 234 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCCH
T ss_pred CEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCch
Confidence 4799999999999999987753 2445555553 5544433 365 44444 2222 1 356889999997665
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
..... -.+...|.++.|+|+|||.+++
T Consensus 235 ~~~~~-e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YMLFN-ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHTC-HHHHHHHHHGGGGEEEEEEEES
T ss_pred HhcCc-HHHHHHHHHHHHhcCCCCEEEE
Confidence 43322 2345677899999999999986
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.61 E-value=6.4e-05 Score=72.03 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=70.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCcccceeeccccccccCCCc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c 559 (629)
.+|||+|||.|.++.+|++.+. -.|+.+|.++.++..+.++-- +.+++ ..+..+|.+||+|-++..|......
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~---~d~~~~~~~~D~v~~~~p~~~~~~~- 126 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMV---ADVSEISGKYDTWIMNPPFGSVVKH- 126 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEE---CCGGGCCCCEEEEEECCCC-------
T ss_pred CEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEE---CcHHHCCCCeeEEEECCCchhccCc-
Confidence 3699999999999999988753 245666666678887777631 23333 3334467899999998887765442
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 560 DITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
....++.++-|+| |+.+++. +......+.+++.... ++.
T Consensus 127 ~~~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 127 SDRAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG-DVF 165 (200)
T ss_dssp -CHHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE-EEE
T ss_pred hhHHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC-CEE
Confidence 2246788888888 5544444 3444566666665554 443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.7e-05 Score=78.46 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=58.5
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC-c-ccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP-R-TYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp-~-t~Dl~H~~~~fs 553 (629)
+|||+|||.|.+++.|++..- .+|+.+|.++..+..+.++ |+ +.+.. +.....+| . .||+|.+...+.
T Consensus 94 ~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~Ii~~~~~~ 169 (235)
T 1jg1_A 94 NILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL--GDGSKGFPPKAPYDVIIVTAGAP 169 (235)
T ss_dssp CEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE--SCGGGCCGGGCCEEEEEECSBBS
T ss_pred EEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE--CCcccCCCCCCCccEEEECCcHH
Confidence 699999999999999987520 2334445444566666654 43 22222 11234455 3 499999866654
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
. +..++-|+|||||.+++.-..
T Consensus 170 ~---------~~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 170 K---------IPEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp S---------CCHHHHHTEEEEEEEEEEECS
T ss_pred H---------HHHHHHHhcCCCcEEEEEEec
Confidence 2 224789999999999997543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=7e-05 Score=77.83 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=62.4
Q ss_pred eeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc----cceec-cccccCCCCCcccceee
Q 006834 480 YRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL----IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
-++|||+|||.|+++..|++. ++ .+|+-+|..+..+.++.++ |+ +.+++ |-.+-+...+.+||+|-
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSV--ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 367999999999999999887 33 2444455555677776653 33 22332 21111223358899998
Q ss_pred ccccccccCC-CcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 548 ASGVFSIYQD-RCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 548 ~~~~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
++........ .-....++.++-|+|||||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 7543221110 0112468999999999999999964
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=5.5e-05 Score=78.82 Aligned_cols=140 Identities=11% Similarity=0.041 Sum_probs=81.0
Q ss_pred eEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------c-c----cceec-cccccCCCCCcccceee
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------G-L----IGTYQ-DWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------g-l----i~~~~-~~~e~f~~yp~t~Dl~H 547 (629)
++|||+|||.|+++..|++. ++ .+|+-+|..+..+..+.++ | + +.+++ |..+-....+.+||+|-
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 67999999999999999887 34 3445555555677766553 2 1 22222 21111122358899998
Q ss_pred cccccccc--CC--CcCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCCeEEEeec--CCCCCCCce
Q 006834 548 ASGVFSIY--QD--RCDITNILLEMDRILRPEGTVIFRD------TVEMLVKIRSITEGMRWKSQIMDH--ESGPFNPEK 615 (629)
Q Consensus 548 ~~~~fs~~--~~--~c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~l~w~~~~~~~--e~~~~~~e~ 615 (629)
++...... .. .-....++.++.|+|||||.+++.. ..+....+.+.++..--.+..... ... .+...
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~-~g~~~ 235 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGF-FLNFG 235 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGG-TEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCC-CCeEE
Confidence 86433220 10 0113678999999999999999862 123344555555554333332211 001 12346
Q ss_pred EEEEEecc
Q 006834 616 ILFAAKTY 623 (629)
Q Consensus 616 ~l~~~K~~ 623 (629)
+++|.|.+
T Consensus 236 ~~~as~~~ 243 (314)
T 1uir_A 236 FLLASDAF 243 (314)
T ss_dssp EEEEESSS
T ss_pred EEEEECCC
Confidence 78888863
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.3e-05 Score=78.91 Aligned_cols=95 Identities=12% Similarity=0.165 Sum_probs=64.2
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCC-CCCchHHHHhhc---------c-------ccee-ccccccCCCC---
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHS-NPDTLGAIYERG---------L-------IGTY-QDWCEAFSTY--- 539 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~-~~~~l~~~~erg---------l-------i~~~-~~~~e~f~~y--- 539 (629)
.+|||+|||+|.++.+|++.+. -.|+.+|. ++.++..+.++- + +.+. .+|.+.....
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 3699999999999999887753 24555666 456666655432 1 2233 3677644333
Q ss_pred --CcccceeeccccccccCCCcCHHHHHHHHhhccc---C--CcEEEE
Q 006834 540 --PRTYDLIHASGVFSIYQDRCDITNILLEMDRILR---P--EGTVIF 580 (629)
Q Consensus 540 --p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLr---P--gG~~i~ 580 (629)
+..||+|-+..++-. .-+.+.+|.++.|+|+ | ||.+++
T Consensus 159 ~~~~~fD~Ii~~dvl~~---~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSF---HQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HSCSSBSEEEEESCCSC---GGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred ccCCCCCEEEEeCcccC---hHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 478999877444322 2346889999999999 9 997655
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.58 E-value=4.3e-05 Score=77.89 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=71.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCCCcccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~yp~t~Dl~H 547 (629)
+..+. +|||+|||+|+|+..|++. + ...|+.+|.++..+..+.+ .|+ +-+++.=.+.+ ..+.+||+|-
T Consensus 117 ~~~~~--~VLDlgcG~G~~s~~la~~~~--~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi 191 (272)
T 3a27_A 117 SNENE--VVVDMFAGIGYFTIPLAKYSK--PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVI 191 (272)
T ss_dssp CCTTC--EEEETTCTTTTTHHHHHHHTC--CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEE
T ss_pred cCCCC--EEEEecCcCCHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEE
Confidence 45554 6999999999999999875 2 1133444554456655544 243 22333111222 2256899987
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------HH-HHHHHHHHhcCCCeEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------EM-LVKIRSITEGMRWKSQ 602 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------~~-~~~~~~~~~~l~w~~~ 602 (629)
++... ....++.++-|+|+|||.+++++.. +. ...++.+.+.+.++..
T Consensus 192 ~d~p~-------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 192 MGYVH-------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp ECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred ECCcc-------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 75433 5677899999999999999998543 22 3334445555555544
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=8.5e-05 Score=78.85 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=63.8
Q ss_pred CCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
....+.|||+|||.|.++.+|+++ ++-+. -.|.+ .++..+.++.-|.... ...|.++|.. |++.+..++-.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~---~~D~~-~~~~~a~~~~~v~~~~--~D~~~~~p~~-D~v~~~~vlh~ 271 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGV---NFDLP-HVISEAPQFPGVTHVG--GDMFKEVPSG-DTILMKWILHD 271 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECH-HHHTTCCCCTTEEEEE--CCTTTCCCCC-SEEEEESCGGG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEE---EecCH-HHHHhhhhcCCeEEEe--CCcCCCCCCC-CEEEehHHhcc
Confidence 445678999999999999999763 33222 12222 3333333322223222 1233466755 99998877766
Q ss_pred cCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 555 YQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 555 ~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+.+. +...+|.++-|+|||||+++|.|.
T Consensus 272 ~~d~-~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 272 WSDQ-HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp SCHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 5432 446799999999999999999753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0001 Score=77.28 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=79.7
Q ss_pred eEEEeecccchhHHhhhhC-C-CeEEEEecCCCCCCCchHHHHhh-cc-----cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSK-Y-PVWVMNVVPFHSNPDTLGAIYER-GL-----IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~-~-~v~~mnv~~~~~~~~~l~~~~er-gl-----i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
.+|||+|||.|+++.+|++ . ++ .|+-+|..+..+.++.++ ++ +.+++ |-.+-...++ .+||+|-++.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence 4799999999999999987 3 44 233344444577777665 11 22332 2222223455 8999998754
Q ss_pred cccccCC-CcCHHHHHHHHhhcccCCcEEEEEeC--H--HHHHHH-HHHHhcCCCeEEEe-ecC--CCCCCCceEEEEEe
Q 006834 551 VFSIYQD-RCDITNILLEMDRILRPEGTVIFRDT--V--EMLVKI-RSITEGMRWKSQIM-DHE--SGPFNPEKILFAAK 621 (629)
Q Consensus 551 ~fs~~~~-~c~~~~~l~e~dRiLrPgG~~i~~d~--~--~~~~~~-~~~~~~l~w~~~~~-~~e--~~~~~~e~~l~~~K 621 (629)
....... .-.-+.++.++-|+|||||.+++.-. . .....+ +.+.+.+. .+.++ +.. .|......||+|.|
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~-~v~~~~~~~~~~g~~~gN~Vl~As~ 246 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE-HVAVIADPPMLKGRRYGNIILMGSD 246 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS-EEEEEECHHHHTTSSCEEEEEEEES
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC-ceEEEEecCCCCCCcCceEEEEEEC
Confidence 3222211 11126799999999999999998522 1 222222 22222232 33333 211 12223467899988
Q ss_pred ccc
Q 006834 622 TYW 624 (629)
Q Consensus 622 ~~w 624 (629)
...
T Consensus 247 ~pl 249 (317)
T 3gjy_A 247 TEF 249 (317)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00014 Score=77.74 Aligned_cols=116 Identities=14% Similarity=0.006 Sum_probs=78.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-------------CCeEE
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-------------VPAMI 272 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-------------~~~~~ 272 (629)
..|.+.+..... ....+++||=||.|.|..++++++.... .++.+|++++.++.|++.- ..+.+
T Consensus 190 ~~Y~e~l~h~~l-~~~~pkrVLIIGgGdG~~~revlkh~~~--~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~v 266 (381)
T 3c6k_A 190 LAYTRAIMGSGK-EDYTGKDVLILGGGDGGILCEIVKLKPK--MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQV 266 (381)
T ss_dssp HHHHHHHTTTTC-CCCTTCEEEEEECTTCHHHHHHHTTCCS--EEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEE
T ss_pred HHHHHHHHHHHh-hcCCCCeEEEECCCcHHHHHHHHhcCCc--eeEEEccCHHHHHHHHhhchhhhhhhhccccccceee
Confidence 345555544332 2234579999999999999999987653 5678899999999998742 12566
Q ss_pred EEecCCCC----CCCCCCeeEEEecCcccccccC---------HHHHHHHHHhcccCCcEEEEEe
Q 006834 273 GVISSKRL----PYPARAFDMAHCSGCLIPWYMY---------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 273 ~v~d~~~L----p~pd~sFDlV~~s~~L~h~~~d---------~~~~L~el~RvLKPGG~liis~ 324 (629)
...|.... .-..++||+|+.-..-.....+ ...+++.+.++|+|||.++..+
T Consensus 267 ii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 267 LIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 66665432 1134689999963211010111 2357889999999999998753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00026 Score=72.00 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=75.8
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh------cc----cceeccccccCCCCCcccceeecc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER------GL----IGTYQDWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er------gl----i~~~~~~~e~f~~yp~t~Dl~H~~ 549 (629)
-++|||+|||.|++++++++.+ ..|+-+|..+..+.++.++ ++ +.+.+ +.-..|+.+||+|-++
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~---~D~~~~~~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLLDLDIKKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEES---SGGGSCCCCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEe---chHHHHHhhCCEEEEC
Confidence 3689999999999999998775 3455555554566655442 11 22222 2222233889998874
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEe-C----HHHHHHHHHHHhcCCCeEEEeecCCCCC-CCceEEEEEecc
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRD-T----VEMLVKIRSITEGMRWKSQIMDHESGPF-NPEKILFAAKTY 623 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~----~~~~~~~~~~~~~l~w~~~~~~~e~~~~-~~e~~l~~~K~~ 623 (629)
. -+...++.++-|+|||||.+++.. . .+....+.+.++.. +.........-|. +...+++|.|.+
T Consensus 147 ~--------~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as~~~ 217 (262)
T 2cmg_A 147 Q--------EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_dssp S--------CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEESSC
T ss_pred C--------CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEeeCCC
Confidence 1 122347889999999999999952 1 12334444444443 2222222332232 234577888864
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=6.6e-05 Score=80.20 Aligned_cols=122 Identities=15% Similarity=0.216 Sum_probs=77.4
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceec-cccccCCCC---Ccccceeecc
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQ-DWCEAFSTY---PRTYDLIHAS 549 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~-~~~e~f~~y---p~t~Dl~H~~ 549 (629)
-.+|||+|||+|+|+.+|++. ..+|+.+|.++..+..+.+. |+ +.+++ |..+.+... +.+||+|.++
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 357999999999999999876 45677777776677766554 44 33333 211111111 4689999885
Q ss_pred ccc-cccCCC-----cCHHHHHHHHhhcccCCcEEEEEeCH------HHHHHHHHHHhcCCCeEEEe
Q 006834 550 GVF-SIYQDR-----CDITNILLEMDRILRPEGTVIFRDTV------EMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 550 ~~f-s~~~~~-----c~~~~~l~e~dRiLrPgG~~i~~d~~------~~~~~~~~~~~~l~w~~~~~ 604 (629)
--. ...... -....++.++-|+|+|||.+++.... .....+++.+.....+..+.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 432 211111 22456899999999999999997432 23455666666666555544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.54 E-value=3.6e-05 Score=75.16 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=61.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCe----EEEEecCCCCCCCchHHHHhh----cc-------cceeccccccCCCC
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPV----WVMNVVPFHSNPDTLGAIYER----GL-------IGTYQDWCEAFSTY 539 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v----~~mnv~~~~~~~~~l~~~~er----gl-------i~~~~~~~e~f~~y 539 (629)
+.++ .+|||+|||.|.+++.|++..- =..+|+.+|.++..+..+.++ |+ +.+.+ .......
T Consensus 78 ~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~--~d~~~~~ 153 (227)
T 2pbf_A 78 LKPG--SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH--KNIYQVN 153 (227)
T ss_dssp SCTT--CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE--CCGGGCC
T ss_pred CCCC--CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE--CChHhcc
Confidence 4444 3699999999999999876410 001344445555667666655 42 22222 1122222
Q ss_pred ------CcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 540 ------PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 540 ------p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+..||+|++...+. .++.++-++|||||.+++.-.
T Consensus 154 ~~~~~~~~~fD~I~~~~~~~---------~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 154 EEEKKELGLFDAIHVGASAS---------ELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHHHHCCEEEEEECSBBS---------SCCHHHHHHEEEEEEEEEEEE
T ss_pred cccCccCCCcCEEEECCchH---------HHHHHHHHhcCCCcEEEEEEc
Confidence 27899999866654 356888999999999999754
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00012 Score=83.52 Aligned_cols=99 Identities=15% Similarity=-0.025 Sum_probs=66.1
Q ss_pred CCeEEEeCCCCchHHHHHHH----cC--------CcEeEEEeecCcHHHHHHHHHc---C--CCeEEEEecCCCCCCC--
Q 006834 223 IRTAVDTGCGVASWGAYLLK----RD--------ILTMSFARRDTHEAQVQFALER---G--VPAMIGVISSKRLPYP-- 283 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~----~g--------~~~v~i~gvDiS~~~i~~A~er---g--~~~~~~v~d~~~Lp~p-- 283 (629)
...|||||||+|-+....+. .+ .....++++|.++.++..++.+ + ..+.++.++.+.+..|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 34799999999988643221 11 1245778889998766544432 3 4588899999887663
Q ss_pred ---CCCeeEEEecCccc-ccccCHHHHHHHHHhcccCCcEEE
Q 006834 284 ---ARAFDMAHCSGCLI-PWYMYDGLYLLEVDRVLRPGGYWI 321 (629)
Q Consensus 284 ---d~sFDlV~~s~~L~-h~~~d~~~~L~el~RvLKPGG~li 321 (629)
.+..|+|++-..=. -..+--...|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 57899999833210 011112457888899999999864
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.8e-05 Score=77.48 Aligned_cols=98 Identities=19% Similarity=0.322 Sum_probs=68.3
Q ss_pred eEEEeecccchh----HHhhhhCC-C----eEEEEecCCCCCCCchHHHHhhc--------c------------------
Q 006834 481 RNVMDMNAYLGG----FAAAMSKY-P----VWVMNVVPFHSNPDTLGAIYERG--------L------------------ 525 (629)
Q Consensus 481 R~vlD~~~g~Gg----faa~l~~~-~----v~~mnv~~~~~~~~~l~~~~erg--------l------------------ 525 (629)
-.|+|+|||+|- .|..|++. + =| .|..+|-++.+|..+.+.- +
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~--~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRW--KVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE--EEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCe--EEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 359999999997 56556543 2 12 7888888888998887531 0
Q ss_pred -----------cc-eeccccccCCCCC--cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 526 -----------IG-TYQDWCEAFSTYP--RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 526 -----------i~-~~~~~~e~f~~yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
|- ..||+.+ .+|| ..||+|-|..|+-.. +.-....++.++.+.|+|||++++...
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred ceeechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 11 1235554 2344 789999998877543 233457899999999999999999643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=9e-05 Score=79.84 Aligned_cols=120 Identities=15% Similarity=0.292 Sum_probs=75.2
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccc-eec-cccccCCCCCcccceeecccc-ccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIG-TYQ-DWCEAFSTYPRTYDLIHASGV-FSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~-~~~-~~~e~f~~yp~t~Dl~H~~~~-fs~ 554 (629)
+|||+|||+|+|+.+++..+.- |+.+|.++..+..+.+. |+-. +.+ |..+.+..++..||+|.++-- |+.
T Consensus 217 ~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 217 RVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp EEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred eEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 5999999999999999887653 56667776677766554 4422 221 222222334545999988643 221
Q ss_pred cCC-----CcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCCCeEEEe
Q 006834 555 YQD-----RCDITNILLEMDRILRPEGTVIFRDT------VEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 555 ~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~ 604 (629)
... ..+...++.++-|+|+|||.+++... .+....+++.+.....+..+.
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~ 354 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH 354 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 111 11334688899999999999996532 234456666666555555544
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.49 E-value=5.8e-05 Score=82.35 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=66.5
Q ss_pred HHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHH-------Hh----hcc----cce
Q 006834 465 MTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAI-------YE----RGL----IGT 528 (629)
Q Consensus 465 v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~-------~e----rgl----i~~ 528 (629)
+..+...+. +..+. .|||+|||+|.+++.|++. +. ..|+.+|....++..+ .+ .|+ +.+
T Consensus 231 v~~ml~~l~-l~~g~--~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGD--TFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHTT-CCTTC--EEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHhcC-CCCCC--EEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 333444332 44443 5999999999999999874 32 1344445544454444 33 353 222
Q ss_pred eccccccCCC---C---CcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH
Q 006834 529 YQDWCEAFST---Y---PRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV 584 (629)
Q Consensus 529 ~~~~~e~f~~---y---p~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~ 584 (629)
.+ +..+.. + +.+||+|-++..+ + .-+++.+|.|+-|+|||||.+++.+..
T Consensus 306 i~--gD~~~~~~~~~~~~~~FDvIvvn~~l--~--~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 306 SL--KKSFVDNNRVAELIPQCDVILVNNFL--F--DEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp EE--SSCSTTCHHHHHHGGGCSEEEECCTT--C--CHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred EE--cCccccccccccccCCCCEEEEeCcc--c--cccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 22 123321 2 3789999875333 1 135677889999999999999998643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 629 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 8e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 0.001 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 4e-04 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.002 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.002 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 42.4 bits (98), Expect = 8e-05
Identities = 25/166 (15%), Positives = 54/166 (32%), Gaps = 8/166 (4%)
Query: 207 AYIDNINELI-PLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE 265
A ID + E+ +R +D CG L +R + + + +
Sbjct: 25 AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAK 84
Query: 266 RGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWY--MYDGLYLLEVDRVLRPGGYWILS 323
+ + FD I ++ +V L+PGG +I
Sbjct: 85 ERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144
Query: 324 GPPIHWKK-----YWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIE 364
P + W + ++ + + +E ++L +K+L++
Sbjct: 145 FPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQ 190
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.9 bits (89), Expect = 0.001
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 1/127 (0%)
Query: 455 REDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNP 514
R E K + + ++I K R V+D+ G +++ V+ +
Sbjct: 17 RRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEML 76
Query: 515 DTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILR 573
+ + + +D + +Y D D+ + ++ L+
Sbjct: 77 RVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALK 136
Query: 574 PEGTVIF 580
P G I
Sbjct: 137 PGGVFIT 143
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.7 bits (94), Expect = 4e-04
Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 21/183 (11%)
Query: 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDI---------LTMSFARRDTH 256
Y + L+ G +D CG L++ + +A ++
Sbjct: 42 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW 99
Query: 257 EAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGL-------YLLE 309
+ + A ++ V ++ + FD C G L
Sbjct: 100 NRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKN 159
Query: 310 VDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLIEKNDLA 369
+ ++RPGG ++ + G +++ + D +DI + K +
Sbjct: 160 IASMVRPGGLLVIDHRNYDY-ILSTGCAPPGKNIYYKSDLTKDI--TTSVLTVNNKAHMV 216
Query: 370 IWQ 372
Sbjct: 217 TLD 219
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 0.002
Identities = 21/177 (11%), Positives = 39/177 (22%), Gaps = 27/177 (15%)
Query: 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR---------------DILTMSFARR 253
+ I I T I+ + G G +L + + A+
Sbjct: 28 LPGIIGRIGDTKSEIKI-LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKY 86
Query: 254 DTHEAQVQFALERGVPAMIGVI----SSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLE 309
A++ S + +D H L
Sbjct: 87 KELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLK-F 145
Query: 310 VDRVLRPGGYWILSGPPIH------WKKYWRGWERTKEDLKQEQDTIEDIAKRLCWK 360
+L ++ WKKY + + D + + L K
Sbjct: 146 FHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLK 202
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/140 (14%), Positives = 34/140 (24%), Gaps = 3/140 (2%)
Query: 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE 265
+ D I E +D CG + L + T + ++ +
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR 80
Query: 266 RGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDG---LYLLEVDRVLRPGGYWIL 322
R FD+ C + + Y V L+ GG +I
Sbjct: 81 SQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
Query: 323 SGPPIHWKKYWRGWERTKED 342
+ G D
Sbjct: 141 DINSYYKLSQVLGNNDFNYD 160
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 629 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.72 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.71 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.67 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.67 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.65 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.63 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.63 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.6 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.6 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.57 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.56 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.55 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.55 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.54 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.5 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.5 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.5 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.48 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.47 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.43 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.41 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.41 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.41 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.4 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.39 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.36 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.33 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.33 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.29 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.27 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.27 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.23 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.23 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.23 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.2 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.18 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.15 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.15 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.13 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.13 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.12 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.12 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.1 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.07 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.05 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.01 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.0 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.94 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.9 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.89 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.89 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.89 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.88 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.87 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.85 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.85 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.85 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.84 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.84 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 98.83 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.79 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.78 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.77 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.76 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.76 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.75 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.75 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.72 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.67 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.65 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.61 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.59 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.59 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.58 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.55 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.53 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.53 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.52 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.51 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.51 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.48 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.45 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.45 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.43 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.41 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.4 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.39 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.37 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.37 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.34 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.31 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.31 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.3 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.28 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.28 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.27 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.27 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.27 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.25 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.24 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.23 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.21 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.2 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.19 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.19 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.17 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.13 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.11 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.11 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.1 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.1 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.04 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.92 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.89 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.88 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.85 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.84 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 97.76 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.72 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.7 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.65 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.63 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.62 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.6 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.56 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.52 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.46 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.42 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.35 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.34 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.29 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.26 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.24 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.2 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.17 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.1 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.03 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.03 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 96.98 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 96.93 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.8 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 96.79 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.79 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.7 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 96.69 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 96.67 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 96.64 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.63 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.61 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.55 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.48 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 96.45 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 96.44 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.41 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 96.41 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.36 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 96.34 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 96.31 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.2 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.11 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 96.11 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 95.98 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 95.68 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 95.63 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 95.16 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 95.14 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.02 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 94.8 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 94.66 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.39 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.3 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 94.28 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.95 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 93.48 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 93.25 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 92.61 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 92.4 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.38 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 92.3 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.82 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 91.59 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.47 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.54 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 90.26 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.01 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.86 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 89.85 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 89.79 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 89.08 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 89.01 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 88.89 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 88.81 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 88.58 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 88.32 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 88.01 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 87.56 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 87.28 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 87.15 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 86.29 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 86.27 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 85.62 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 85.52 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.21 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.92 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 83.52 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 83.15 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 83.07 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 82.91 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 82.58 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.57 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 81.48 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 81.1 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 80.96 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.72 E-value=1.6e-17 Score=162.03 Aligned_cols=110 Identities=16% Similarity=0.229 Sum_probs=95.0
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYP 283 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~p 283 (629)
+..+.+.++..++. +|||||||+|.++..|++++.. ++++|+|+.|++.|+++ + .++.+.+++...+|++
T Consensus 4 ~~~ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~ 78 (231)
T d1vl5a_ 4 LAKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVKK---VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 78 (231)
T ss_dssp HHHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHhcCCCCcC--EEEEecccCcHHHHHHHHhCCE---EEEEECCHHHHhhhhhccccccccccccccccccccccc
Confidence 34566677776666 9999999999999999998764 56779999999999764 2 5689999999999999
Q ss_pred CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 284 ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+++||+|+|..+++|+. ++..+|.++.|+|||||++++..
T Consensus 79 ~~~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 79 DERFHIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccccC-CHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999999998776 89999999999999999999975
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.71 E-value=2.3e-17 Score=162.32 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=98.9
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLP 281 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp 281 (629)
++.+.+.+.+..+++. +|||||||+|.++..|++++. .++|+|+|+.|++.|+++ + .++.+.++|...+|
T Consensus 3 ~~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~ 77 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77 (234)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC
T ss_pred hHHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccccccccccccccccc
Confidence 4567788888888877 999999999999999999875 457779999999999865 3 46899999999999
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+++++||+|+|..+++|+. ++..+|+++.|+|||||++++..
T Consensus 78 ~~~~~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 78 FPDDSFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp SCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeeeeceeeccc-CHHHHHHHHHHeeCCCcEEEEEE
Confidence 9999999999999997765 89999999999999999999974
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=1.2e-16 Score=154.39 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=87.0
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
.+|||||||+|.++..|++.+. .++|+|+|+.|++.|+++ +..+.+...|...+++++++||+|+|..+++|+
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 4899999999999999999876 456779999999999865 456788888999999999999999999999887
Q ss_pred cc-CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 300 YM-YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 300 ~~-d~~~~L~el~RvLKPGG~liis~P 325 (629)
.. +...+|+++.|+|||||+|++..+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 52 456799999999999999999864
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=9.9e-17 Score=156.90 Aligned_cols=98 Identities=26% Similarity=0.401 Sum_probs=85.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecC-ccccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSG-CLIPWYM 301 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~-~L~h~~~ 301 (629)
+.+|||+|||+|.++..|++.+. .++|+|+|+.|++.|++++... +..++...+++++++||+|+|.. +++|+.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~- 117 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVE- 117 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCS-
T ss_pred CCEEEEECCCCchhcccccccce---EEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhhh-
Confidence 44899999999999999999876 4566799999999999987644 55788999999999999999864 666654
Q ss_pred CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 302 YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 302 d~~~~L~el~RvLKPGG~liis~P 325 (629)
++..+|+++.|+|||||+++++.|
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 889999999999999999999975
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.65 E-value=4.4e-16 Score=157.47 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=93.4
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCC
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLP 281 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp 281 (629)
++.+....+..++. +|||||||+|.++..|+++ +. .++++|+|+.|++.|+++ + .++.+..+|...+|
T Consensus 56 ~~~l~~~~~l~~~~--~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~ 130 (282)
T d2o57a1 56 ASELAMTGVLQRQA--KGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 130 (282)
T ss_dssp HHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence 33344444444444 9999999999999999986 44 456779999999999875 3 36899999999999
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++++||+|+|..+++|+. ++..+|.++.|+|||||+|++..+
T Consensus 131 ~~~~sfD~V~~~~~l~h~~-d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 131 CEDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp SCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhccchhhhcc-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999999999987 889999999999999999999854
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=7e-16 Score=148.34 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=98.1
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHH
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDG 304 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~ 304 (629)
+|||||||+|.++..+.+ + +|+|+|+.|++.|++++ +.+.+++...+++++++||+|+|..+++|+. ++.
T Consensus 39 ~vLDiGcG~G~~~~~~~~----~---~giD~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-d~~ 108 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI----K---IGVEPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFVD-DPE 108 (208)
T ss_dssp CEEEETCTTSTTHHHHTC----C---EEEESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CHH
T ss_pred eEEEECCCCcccccccce----E---EEEeCChhhcccccccc--ccccccccccccccccccccccccccccccc-ccc
Confidence 799999999999888753 2 46699999999999885 6788999999999999999999999998886 899
Q ss_pred HHHHHHHhcccCCcEEEEEeCCCCccc------cccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 305 LYLLEVDRVLRPGGYWILSGPPIHWKK------YWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 305 ~~L~el~RvLKPGG~liis~P~~~w~~------~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
.+|+++.|+|+|||.+++..|+.+... ....+...........+.+.++.++.+++.+
T Consensus 109 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 109 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred cchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEE
Confidence 999999999999999999987654211 0000111111111224567788888888654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.2e-15 Score=151.07 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=98.4
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV--PAMIGVISS 277 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~ 277 (629)
....++.+.+.+...+++ +|||||||+|.++..|+++ +. .++|+|+|+.|++.|+++ +. .+.|.++|.
T Consensus 18 ~~~~~~~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~---~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~ 92 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 92 (245)
T ss_dssp CHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CHHHHHHHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCC---EEEEEecccchhhHHHHHHHHhhccccchhhhhHH
Confidence 466778889998888777 9999999999999999876 44 456779999999998875 43 489999999
Q ss_pred CCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 278 KRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 278 ~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
..+ +++++||+|+|..+++|+. +...++.++.|+|||||++++..+
T Consensus 93 ~~~-~~~~~fD~v~~~~~~~~~~-d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 93 AGY-VANEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TTC-CCSSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhc-cccCceeEEEEEehhhccC-CHHHHHHHHHHHcCcCcEEEEEec
Confidence 887 4689999999999998887 889999999999999999999865
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.5e-15 Score=153.14 Aligned_cols=110 Identities=22% Similarity=0.288 Sum_probs=91.4
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~s 286 (629)
..++.+.+.++. .+.+|||||||+|.++..|++.+.. ..++|+|+|+.|++.|+++..++.+.++|...+|+++++
T Consensus 72 ~~~~~l~~~~~~---~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~s 147 (268)
T d1p91a_ 72 AIVAQLRERLDD---KATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTS 147 (268)
T ss_dssp HHHHHHHHHSCT---TCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTC
T ss_pred HHHHHHHHhcCC---CCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhcccccccceeeehhhccCCCCC
Confidence 334444444433 3558999999999999999998653 356788999999999999998999999999999999999
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
||+|++..+++| +.|+.|+|||||+|++++|..+
T Consensus 148 fD~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 148 MDAIIRIYAPCK--------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp EEEEEEESCCCC--------HHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEeecCCHHH--------HHHHHHHhCCCcEEEEEeeCCc
Confidence 999999887754 5789999999999999987654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.60 E-value=3.1e-15 Score=146.41 Aligned_cols=146 Identities=14% Similarity=0.034 Sum_probs=107.8
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-CCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
.+|||||||+|.++..|++.+.. ++++|+|+++++.|+++. .++.+..++...+++ +++||+|+|..+++|+. +
T Consensus 22 ~~VLDiGcG~G~~~~~l~~~g~~---v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~-d 96 (225)
T d2p7ia1 22 GNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID-D 96 (225)
T ss_dssp SCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-S
T ss_pred CcEEEEeCCCcHHHHHHHHcCCe---EEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecC-C
Confidence 37999999999999999998875 456699999999999874 357888888877765 58999999999998886 8
Q ss_pred HHHHHHHHH-hcccCCcEEEEEeCCCCccccc-----------cCccCc----chhhhhHHHHHHHHHHHhcceeecccC
Q 006834 303 DGLYLLEVD-RVLRPGGYWILSGPPIHWKKYW-----------RGWERT----KEDLKQEQDTIEDIAKRLCWKKLIEKN 366 (629)
Q Consensus 303 ~~~~L~el~-RvLKPGG~liis~P~~~w~~~~-----------~~w~~~----~e~l~~~~~~ie~l~~~l~w~~v~~~~ 366 (629)
+..+|.++. |+|||||.+++..|+.+..... ..+... .+......+.++.+.+..+++.+..
T Consensus 97 ~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~-- 174 (225)
T d2p7ia1 97 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR-- 174 (225)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE--
T ss_pred HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE--
Confidence 999999998 8999999999999865532211 011000 0000112456888888888875442
Q ss_pred ceEEEeccCCc
Q 006834 367 DLAIWQKPINH 377 (629)
Q Consensus 367 ~~aiwqKp~~~ 377 (629)
-.++-||+++
T Consensus 175 -~~~~~kp~~~ 184 (225)
T d2p7ia1 175 -SGIFFKALAN 184 (225)
T ss_dssp -EEEEECCSCH
T ss_pred -EEEEeccccH
Confidence 2345677654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.2e-15 Score=147.09 Aligned_cols=136 Identities=13% Similarity=0.045 Sum_probs=101.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----CCeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----VPAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
..+|||||||+|.++..|++.+.. .++++|+|+.|++.|+++. ..+.|.++|...+++++++||+|+|..+++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 458999999999999998877653 4677899999999999863 246889999999999999999999999999
Q ss_pred ccccC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeec
Q 006834 298 PWYMY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLI 363 (629)
Q Consensus 298 h~~~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 363 (629)
|+... ...+|.++.++|||||.+++..+....... +...........+.+.++++..+++.+.
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI---LDDVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE---EETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc---cccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 98732 247999999999999999998642211110 1111111222345677778777776543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.56 E-value=4.7e-15 Score=148.48 Aligned_cols=136 Identities=12% Similarity=0.103 Sum_probs=99.5
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCCCCCeeEEEecCccccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYPARAFDMAHCSGCLIPW 299 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~ 299 (629)
..+|||+|||+|.++..|+.++.. .++++|+|+.|++.|+++. ..+.+.+.+...+++++++||+|+|..+++|+
T Consensus 94 ~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl 171 (254)
T d1xtpa_ 94 TSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL 171 (254)
T ss_dssp CSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccccc
Confidence 448999999999999998876544 4577799999999999874 23688889999999999999999999999998
Q ss_pred ccC-HHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 300 YMY-DGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 300 ~~d-~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
.+. ...+|+++.++|||||++++..+........ +...........+.++++++..+++.+
T Consensus 172 ~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~--~d~~d~~~~rs~~~~~~l~~~aGf~ii 233 (254)
T d1xtpa_ 172 TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL--VDKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE--EETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred chhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce--ecccCCceeCCHHHHHHHHHHcCCEEE
Confidence 732 3578999999999999999976422211100 111111112223456777777777554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=1.1e-14 Score=143.35 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=84.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecC-ccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSG-CLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~-~L~ 297 (629)
.++|||||||+|.++..|++++.. ++|+|+|+.|++.|+++ +.++.+.++|+..++++ ++||+|+|.. +++
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~~---v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCccchhhcccceE---EEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 448999999999999999999874 56779999999999875 56789999999999987 5899999974 555
Q ss_pred ccc-cCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 298 PWY-MYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 298 h~~-~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
|.. ++...+|++++++|||||+|++..++
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 543 23567999999999999999998653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.55 E-value=1.1e-14 Score=147.69 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=95.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP 281 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp 281 (629)
+.|++.+.+.+... .++.+|||+|||+|.++..|++.......++|+|+|+.+++.|+++ +.++.|.+.|...++
T Consensus 12 ~d~l~~l~~~~~~~-~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~ 90 (281)
T d2gh1a1 12 DDYVSFLVNTVWKI-TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 90 (281)
T ss_dssp HHHHHHHHHTTSCC-CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred HHHHHHHHHHHhcc-CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc
Confidence 55666666554322 2345899999999999999998644334567889999999999875 446888999999888
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++ ++||+|+|..+++|+. ++..+|+++.++|||||.+++..|.
T Consensus 91 ~~-~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 91 LN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cc-CCceEEEEehhhhcCC-CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 75 5799999999998876 8999999999999999999998763
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.54 E-value=1.5e-14 Score=141.13 Aligned_cols=119 Identities=15% Similarity=0.011 Sum_probs=86.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~ 278 (629)
+...+.+..++........+|||+|||+|..+..|++.. .....++|+|+|+.|++.|+++ +. .+.+...+.
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~- 101 (225)
T d1im8a_ 23 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI- 101 (225)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT-
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh-
Confidence 333444444443322334589999999999999998753 2344678889999999999975 22 344444444
Q ss_pred CCCCCCCCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEeCC
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~P~ 326 (629)
.+++...+|+|+|+.+++|+.. ++..+|++++|+|||||.|++..+.
T Consensus 102 -~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 102 -RHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp -TTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -hccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 4455678999999999977753 4678999999999999999998643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.54 E-value=1.1e-14 Score=143.77 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=89.7
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYP 283 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~p 283 (629)
..+.+.+.+......+++|||+|||+|.++..|++++.. ++|+|+|++|++.|+++ +.++.+.++|...+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~---v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~- 98 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI- 98 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCc---cEeeccchhhhhhccccccccCccceeeccchhhhcc-
Confidence 344555555544444568999999999999999999874 56779999999999875 5688999999988876
Q ss_pred CCCeeEEEec-Cccccccc--CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCS-GCLIPWYM--YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s-~~L~h~~~--d~~~~L~el~RvLKPGG~liis~P 325 (629)
+++||+|+|. .++.|+.. +...+|++++++|||||.|++..+
T Consensus 99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 4689999986 45555542 345699999999999999998753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.50 E-value=2.3e-14 Score=142.40 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=84.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCCCCC-CCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKRLPY-PARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~Lp~-pd~sFDlV~~s~~ 295 (629)
+.+|||+|||+|..+..+++.+.. .++|+|+|+.|++.|+++. .++.+.++|....++ .+++||+|+|..+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred cCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 448999999999999999988764 4567799999999998752 257888999877775 4778999999999
Q ss_pred ccccccC---HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 296 LIPWYMY---DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 296 L~h~~~d---~~~~L~el~RvLKPGG~liis~P~ 326 (629)
++|.... ...+|.++.|+|||||+|+++.|+
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 9887644 346999999999999999998753
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.50 E-value=2.1e-14 Score=134.79 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=84.2
Q ss_pred cCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----------------CCeEEEEecCC
Q 006834 216 IPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-----------------VPAMIGVISSK 278 (629)
Q Consensus 216 L~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-----------------~~~~~~v~d~~ 278 (629)
+...++. +|||+|||+|..+.+|+++|..+ +|+|+|+.|++.|+++. ....+..++..
T Consensus 16 l~~~~~~--rvLd~GCG~G~~a~~la~~G~~V---~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 90 (201)
T d1pjza_ 16 LNVVPGA--RVLVPLCGKSQDMSWLSGQGYHV---VGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF 90 (201)
T ss_dssp HCCCTTC--EEEETTTCCSHHHHHHHHHCCEE---EEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred cCCCCCC--EEEEecCcCCHHHHHHHHcCCce---EeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence 4444444 99999999999999999998854 56699999999999862 23456777777
Q ss_pred CCC-CCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 279 RLP-YPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 279 ~Lp-~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
.++ ....+||+|++..+++|+..+ ...+++++.++|||||.+++...
T Consensus 91 ~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 91 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred ccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 765 345789999999999887643 46799999999999999988653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.50 E-value=8.3e-14 Score=133.26 Aligned_cols=98 Identities=16% Similarity=0.270 Sum_probs=83.1
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
.+|||||||+|..+..|++++.. ++++|+|+.|++.|+++ +. .+.+.+.|...+++ +++||+|+|..+++|
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYD---VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CcEEEECCCCCHHHHHHHHHhhh---hccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence 38999999999999999999875 45669999999988754 33 47888888888875 689999999999998
Q ss_pred cccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 299 WYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 299 ~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
++.. ...+++++.++|+|||++++...
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8744 35799999999999999999753
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.1e-13 Score=135.71 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=94.5
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-----------------
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----------------- 267 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----------------- 267 (629)
...+.+.+.+++....+. +|||+|||+|..+.+|+++|..+ +|+|+|+.+|+.|+++.
T Consensus 30 ~~~l~~~~~~~l~~~~~~--rvLd~GCG~G~~a~~LA~~G~~V---~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~ 104 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGL--RVFFPLCGKAVEMKWFADRGHSV---VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV 104 (229)
T ss_dssp CHHHHHHHHHHHTTCCSC--EEEETTCTTCTHHHHHHHTTCEE---EEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHHhCCCcE---EEEeCCHHHHHHHHHHhhccccccchhcccccce
Confidence 355667777776655444 99999999999999999999865 55699999999998752
Q ss_pred -----CCeEEEEecCCCCC-CCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 268 -----VPAMIGVISSKRLP-YPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 268 -----~~~~~~v~d~~~Lp-~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
..+.+.+.|...++ ...+.||+|+...+++|+..+ ...++.++.++|||||++++...
T Consensus 105 ~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 105 FKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 24677888877774 567899999999999998755 46799999999999999888764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.47 E-value=1.6e-13 Score=131.25 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=98.8
Q ss_pred ecCCeeeecCCCCCCCC-chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH
Q 006834 187 VEGHRFRFPGGGTTFPN-GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE 265 (629)
Q Consensus 187 ~~g~~~~Fpgggt~f~~-ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e 265 (629)
..|..+.|......|.. +.+...+.+.+.+...++. +|||+|||+|.++..+++.+.. ++++|+|+.+++.|++
T Consensus 18 ~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~---v~~iD~s~~~i~~a~~ 92 (194)
T d1dusa_ 18 LRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDD--DILDLGCGYGVIGIALADEVKS---TTMADINRRAIKLAKE 92 (194)
T ss_dssp ETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHH
T ss_pred ECCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCCCC--eEEEEeecCChhHHHHHhhccc---cceeeeccccchhHHH
Confidence 45666667544445533 3334455666777665554 9999999999999999988764 4667999999999986
Q ss_pred c----C---CCeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 266 R----G---VPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 266 r----g---~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+ + ..+.+...|... ++++++||+|+|+.++++..+....++.++.++|+|||.+++..
T Consensus 93 n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 93 NIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp HHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 4 2 357788888765 56788999999998885554234678999999999999998864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=1.6e-13 Score=140.24 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=90.5
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEe
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV--PAMIGVI 275 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~ 275 (629)
......++.+.+.+...+|. +|||||||.|.++.+++++ +. .++|+++|+++++.|+++ +. .+.+...
T Consensus 44 ~Aq~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~---~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~ 118 (291)
T d1kpia_ 44 EAQYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ 118 (291)
T ss_dssp HHHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCCC--EEEEecCcchHHHHHHHHhcCc---ceeeccchHHHHHHHHHHHHhhccchhhhhhhh
Confidence 33455677888888887777 9999999999999999865 55 456779999999998865 33 3445444
Q ss_pred cCCCCCCCCCCeeEEEecCcccccccC--------HHHHHHHHHhcccCCcEEEEEe
Q 006834 276 SSKRLPYPARAFDMAHCSGCLIPWYMY--------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 276 d~~~Lp~pd~sFDlV~~s~~L~h~~~d--------~~~~L~el~RvLKPGG~liis~ 324 (629)
| .++++++||.|+|..+++|+.+. -..+++++.|+|||||.+++.+
T Consensus 119 d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 119 G---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp C---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred c---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 4 34567899999999999999732 3689999999999999999964
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.7e-13 Score=134.47 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=78.0
Q ss_pred CeEEEeCCCCchHHHHHHHc----C-CcEeEEEeecCcHHHHHHHHHcC------CCeEE--EEecCC------CCCCCC
Q 006834 224 RTAVDTGCGVASWGAYLLKR----D-ILTMSFARRDTHEAQVQFALERG------VPAMI--GVISSK------RLPYPA 284 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~----g-~~~v~i~gvDiS~~~i~~A~erg------~~~~~--~v~d~~------~Lp~pd 284 (629)
.+|||||||+|.++..|++. . .....++++|+|+.|++.|+++. ..+.+ ...+.. ..+.++
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 37999999999998887653 1 12445688899999999998762 12333 322221 235678
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++||+|+|..+++|+. ++..+|+++.++|+|||++++..+
T Consensus 122 ~~fD~I~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEEccceecCC-CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 9999999999997776 899999999999999999999875
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=4.7e-13 Score=136.26 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=93.8
Q ss_pred CCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEE
Q 006834 201 FPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIG 273 (629)
Q Consensus 201 f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~ 273 (629)
..+.....++.+.+.+...+|. +|||||||.|.++.++++. |+ .++|+++|+++++.|+++ + ..+.+.
T Consensus 43 L~eAQ~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~---~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~ 117 (285)
T d1kpga_ 43 LQEAQIAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVL 117 (285)
T ss_dssp HHHHHHHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCC--EEEEecCcchHHHHHHHhcCCc---ceEEEeccHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3344556678888888887777 9999999999999998875 44 567779999999999875 2 356777
Q ss_pred EecCCCCCCCCCCeeEEEecCccccccc-CHHHHHHHHHhcccCCcEEEEEe
Q 006834 274 VISSKRLPYPARAFDMAHCSGCLIPWYM-YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 274 v~d~~~Lp~pd~sFDlV~~s~~L~h~~~-d~~~~L~el~RvLKPGG~liis~ 324 (629)
..|...++ ++||.|++..+++|+.. +...+++++.|+|||||.+++..
T Consensus 118 ~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 118 LAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp ESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred Hhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 77766554 68999999999999963 34789999999999999999854
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=4.7e-13 Score=135.83 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=87.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~ 278 (629)
...++.+.+.+...++. +|||||||.|.++.+++++ +. .++++|+|+++++.|+++ +. .+.+...|..
T Consensus 38 ~~k~~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~ 112 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 112 (280)
T ss_dssp HHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence 44567777777777766 9999999999999999876 55 456779999999999875 33 3444444444
Q ss_pred CCCCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
.+ +++||.|++..+++|+... ...+++++.|+|||||.+++..
T Consensus 113 ~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 113 DF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 33 4789999999999999733 4789999999999999999964
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=2.7e-13 Score=135.81 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=88.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
+.+|||+|||+|.++..+++.+.. ++++|+|+.+++.|+++ +.+..+.+++... .++.++||+|+++...+
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~- 195 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH-
T ss_pred cCEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc-
Confidence 459999999999999999998865 45669999999999863 5677787776543 35568999999976542
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEEeCCCCccccccCccCcchhhhhHHHHHHHHHHHhcceeec
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILSGPPIHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKLI 363 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis~P~~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 363 (629)
....++.++.++|||||+|++++.. ....+.+.+.++..+|+.+.
T Consensus 196 ---~l~~l~~~~~~~LkpGG~lilSgil-----------------~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 196 ---LHAALAPRYREALVPGGRALLTGIL-----------------KDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEE-----------------GGGHHHHHHHHHHTTCEEEE
T ss_pred ---cHHHHHHHHHHhcCCCcEEEEEecc-----------------hhhHHHHHHHHHHCCCEEEE
Confidence 2356889999999999999998521 11234567777788886544
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=9.6e-14 Score=136.94 Aligned_cols=149 Identities=11% Similarity=-0.011 Sum_probs=97.8
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCe--------------
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPA-------------- 270 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~-------------- 270 (629)
...+.+.+......+.+|||||||+|.++..++..+.. .++|+|+|+.|++.|+++. ...
T Consensus 38 ~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (257)
T d2a14a1 38 LECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEG 115 (257)
T ss_dssp HHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhcc
Confidence 34455555444445669999999999988888776543 5688899999999998651 100
Q ss_pred -----------------EEEEe----cCCCCCCCCCCeeEEEecCcccccccC---HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 271 -----------------MIGVI----SSKRLPYPARAFDMAHCSGCLIPWYMY---DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 271 -----------------~~~v~----d~~~Lp~pd~sFDlV~~s~~L~h~~~d---~~~~L~el~RvLKPGG~liis~P~ 326 (629)
..... +....+++.++||+|++..+++|.... ...+++++.|+|||||+|++..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~ 195 (257)
T d2a14a1 116 NSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 195 (257)
T ss_dssp CGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred ccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEec
Confidence 01111 122235778999999999999988743 456899999999999999998753
Q ss_pred CCccccccCccCcchhhhhHHHHHHHHHHHhccee
Q 006834 327 IHWKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKK 361 (629)
Q Consensus 327 ~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 361 (629)
........ ...........+.++++.+..+|+.
T Consensus 196 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 196 RLPSYMVG--KREFSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp SCCEEEET--TEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred ccccceec--cccccccCCCHHHHHHHHHHCCCEE
Confidence 32111110 0111111223456777788888754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=5.9e-13 Score=134.91 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-----CeEEEEec
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-----PAMIGVIS 276 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-----~~~~~v~d 276 (629)
..+.+.+.+++...++. +|||+|||+|.++..|+++|.. ++|+|+|++|++.|+++ +. ...+..++
T Consensus 42 ~~~~~~l~~~l~~~~~~--~vLD~GcG~G~~~~~la~~g~~---v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCC--EEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhhhcCCC--EEEEecCCCcHHHHHHHHcCCe---eeeccCchHHHHHHHHHHHhcccccccceeeeeecc
Confidence 44556666766655444 8999999999999999999864 56679999999999864 22 22333333
Q ss_pred CCCCC---CCCCCeeEEEec-Cccccccc------CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 277 SKRLP---YPARAFDMAHCS-GCLIPWYM------YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 277 ~~~Lp---~pd~sFDlV~~s-~~L~h~~~------d~~~~L~el~RvLKPGG~liis~P 325 (629)
...++ .+.++||+|+|. .++.|+.. +...+|+++.|+|||||+|++..+
T Consensus 117 ~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 117 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp GGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 32221 135789999985 46777753 245799999999999999999864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.33 E-value=2.8e-12 Score=121.78 Aligned_cols=111 Identities=20% Similarity=0.104 Sum_probs=91.3
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~ 278 (629)
.......+...+...++. +|||+|||+|.++..++..+. .++++|+++.+++.|+++ + .++.+.++|..
T Consensus 18 ~~eir~~il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~ 92 (186)
T d1l3ia_ 18 AMEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP 92 (186)
T ss_dssp CHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred hHHHHHHHHHhcCCCCCC--EEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence 455666777777776666 999999999999999998765 456679999999999875 3 36889999988
Q ss_pred CCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.++.+...||+|++..... +...++.++.+.|||||++++..
T Consensus 93 ~~~~~~~~~D~v~~~~~~~----~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 93 EALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp HHHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcccccCCcCEEEEeCccc----cchHHHHHHHHHhCcCCEEEEEe
Confidence 8777888999999987553 34678999999999999999874
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=8.7e-13 Score=129.41 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC----CCeEEEEecCC--C
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG----VPAMIGVISSK--R 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg----~~~~~~v~d~~--~ 279 (629)
..+.+.+.+.+.. .+.+|||||||+|.++..+++.+. ..++++|+|+.+++.|+++. .++.+...+.. .
T Consensus 40 ~~~~~~la~~~~~---~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 114 (229)
T d1zx0a1 40 TPYMHALAAAASS---KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 114 (229)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHhhcc---CCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccc
Confidence 4555666665543 244899999999999999998754 35788899999999999763 33455554433 3
Q ss_pred CCCCCCCeeEEEe-----cCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 280 LPYPARAFDMAHC-----SGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 280 Lp~pd~sFDlV~~-----s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
.++++++||.|+. ...++|+. +...+++++.|+|||||+|++.
T Consensus 115 ~~~~~~~fD~i~fD~~~~~~~~~~~~-~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 115 PTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccceeeccccccccccccc-CHHHHHHHHHHHcCCCcEEEEE
Confidence 3577889999984 55555655 6788999999999999999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=5.4e-12 Score=126.88 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=92.8
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc--------CCCeEEEEecC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER--------GVPAMIGVISS 277 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er--------g~~~~~~v~d~ 277 (629)
.-+..|..++...++. +|||+|||+|+++..|+.. +..+ .++++|+++++++.|+++ ..++.+.+.|.
T Consensus 83 kD~s~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~ 159 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 159 (264)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence 3366777888887777 9999999999999999986 4432 466779999999999864 14688889998
Q ss_pred CCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 278 KRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 278 ~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
...++++++||.|++ +.+ +|..++.++.|+|||||.+++..|..
T Consensus 160 ~~~~~~~~~fDaV~l-----dlp-~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 160 ADSELPDGSVDRAVL-----DML-APWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp GGCCCCTTCEEEEEE-----ESS-CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccccccCCCcceEEE-----ecC-CHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 888999999999985 444 77889999999999999999987754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.27 E-value=3e-11 Score=118.96 Aligned_cols=116 Identities=8% Similarity=-0.001 Sum_probs=86.1
Q ss_pred hHHHHHHHHhhc---CccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCC
Q 006834 205 ADAYIDNINELI---PLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL---~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~ 278 (629)
...+...|..-+ +..++. +|||+|||+|.++..|++.+... .++++|+|+.|++.++++. .++.....+..
T Consensus 56 rsklaA~i~~gl~~l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g-~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~ 132 (230)
T d1g8sa_ 56 KSKLAAAIIKGLKVMPIKRDS--KILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELLDACAERENIIPILGDAN 132 (230)
T ss_dssp TCHHHHHHHTTCCCCCCCTTC--EEEEESCCSSHHHHHHHHHTTTS-EEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT
T ss_pred ccHHHHHHHhhHHhCCCCCCC--EEEEeCEEcCHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhhhcccceEEEeec
Confidence 445555565544 344455 99999999999999999986543 6788899999999998762 34566666654
Q ss_pred CC-CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RL-PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~L-p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.. ++.+..+|++++...+++. .+...++.++.+.|||||+++++.
T Consensus 133 ~~~~~~~~~~~v~~i~~~~~~~-~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 133 KPQEYANIVEKVDVIYEDVAQP-NQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CGGGGTTTCCCEEEEEECCCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCcccccccceeEEeeccccch-HHHHHHHHHHHHhcccCceEEEEe
Confidence 43 3556777877766666444 367889999999999999999975
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=6.1e-12 Score=122.43 Aligned_cols=110 Identities=12% Similarity=-0.009 Sum_probs=86.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~L 280 (629)
......+.+.+...++. +|||||||+|.++..|++.......++++|+++++++.|+++ + .++.+.+.|....
T Consensus 61 P~~~a~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~ 138 (213)
T d1dl5a1 61 PSLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (213)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred chhhHHHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHc
Confidence 45566677788777776 999999999999999987632222466779999999999975 2 3677778887777
Q ss_pred CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+..+++||+|++..++++.+ .++.+.|||||.+++..
T Consensus 139 ~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred cccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 76778999999999887765 35678899999998853
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.23 E-value=1.7e-11 Score=121.69 Aligned_cols=110 Identities=21% Similarity=0.190 Sum_probs=82.3
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYP 283 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~p 283 (629)
+.+.+.+.... .++|||||||+|.++..|+++.... .++++|+ +++++.++++ + ..+.+..+|... +.
T Consensus 70 ~~~~~~~d~~~--~~~VLDvGcG~G~~~~~la~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~- 143 (253)
T d1tw3a2 70 DAPAAAYDWTN--VRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL- 143 (253)
T ss_dssp HHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-
T ss_pred HHHHhhcCCcc--CCEEEEeCCCCCHHHHHHHHhccee-EEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hc-
Confidence 34445554433 3589999999999999999986543 4566798 5677777754 3 358888888654 22
Q ss_pred CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
..+||+|++..++|||.++ ...+|++++|+|||||.|+|...
T Consensus 144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 3579999999999998733 24789999999999999999754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.23 E-value=1.4e-11 Score=119.22 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=82.3
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCC--CCCCCeeEEEecCccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLP--YPARAFDMAHCSGCLI 297 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~L~ 297 (629)
.|||||||+|.++..|++..+.. .++|+|+++.++..|.++ + .++.+..+|+..+. ++++++|.|++.+..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~-~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~- 109 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDI-NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD- 109 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-
T ss_pred eEEEEEecCcHHHHHHHHhCCCC-cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc-
Confidence 79999999999999999987654 678889999999988754 4 36899999988775 889999999987776
Q ss_pred ccccCH--------HHHHHHHHhcccCCcEEEEEe
Q 006834 298 PWYMYD--------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 298 h~~~d~--------~~~L~el~RvLKPGG~liis~ 324 (629)
+|+... ..+|.++.|+|||||.|++.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 555332 479999999999999999974
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9.9e-12 Score=124.31 Aligned_cols=151 Identities=17% Similarity=0.077 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC--CC---------------
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG--VP--------------- 269 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg--~~--------------- 269 (629)
.....+.+.+......+.+|||+|||+|.+...++..... .++++|+|+.|++.+++.- ..
T Consensus 39 ~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~ 116 (263)
T d2g72a1 39 WKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI 116 (263)
T ss_dssp HHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhh
Confidence 3345666666544445669999999999887665655443 5678899999999998531 10
Q ss_pred ------------------eEEEEecCC------CCCCCCCCeeEEEecCcccccccCH---HHHHHHHHhcccCCcEEEE
Q 006834 270 ------------------AMIGVISSK------RLPYPARAFDMAHCSGCLIPWYMYD---GLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 270 ------------------~~~~v~d~~------~Lp~pd~sFDlV~~s~~L~h~~~d~---~~~L~el~RvLKPGG~lii 322 (629)
......|.. ..+.+.++||+|+|.++++|...+. ..+++++.++|||||+|++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~ 196 (263)
T d2g72a1 117 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 196 (263)
T ss_dssp HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 011222322 1234467899999999999887653 5689999999999999999
Q ss_pred EeCCCC-ccccccCccCcchhhhhHHHHHHHHHHHhcceee
Q 006834 323 SGPPIH-WKKYWRGWERTKEDLKQEQDTIEDIAKRLCWKKL 362 (629)
Q Consensus 323 s~P~~~-w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 362 (629)
.++... +.... ...-..+....+.+.++.+..+++.+
T Consensus 197 ~~~~~~~~~~~~---~~~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 197 IGALEESWYLAG---EARLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp EEEESCCEEEET---TEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred ecccCCcccccC---CcccccCCCCHHHHHHHHHHCCCeEE
Confidence 875222 11111 01111122334567788888887543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.20 E-value=2.3e-11 Score=118.02 Aligned_cols=103 Identities=9% Similarity=-0.057 Sum_probs=77.3
Q ss_pred cCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCCCCCCC---CeeE
Q 006834 216 IPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRLPYPAR---AFDM 289 (629)
Q Consensus 216 L~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~Lp~pd~---sFDl 289 (629)
+...+++ +|||+|||+|..+..|++..... .++++|+|+.|++.|+++ ..++.+...+....+.... .+|+
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE
Confidence 3445555 99999999999999999875433 578889999999998764 3567888888776654444 4555
Q ss_pred EEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 290 AHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 290 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
|++ .+.|.. +...++.++.++|||||++++..
T Consensus 129 v~~--~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 129 IYQ--DIAQKN-QIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEE--CCCSTT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEe--cccChh-hHHHHHHHHHHHhccCCeEEEEE
Confidence 543 233333 56789999999999999999974
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=4.6e-11 Score=117.08 Aligned_cols=110 Identities=19% Similarity=0.105 Sum_probs=84.5
Q ss_pred HHHHHHHHhhcC--ccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C------CCeEEE
Q 006834 206 DAYIDNINELIP--LTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G------VPAMIG 273 (629)
Q Consensus 206 ~~~i~~I~~lL~--~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g------~~~~~~ 273 (629)
......+.++|. ..++. +|||||||+|..++.|++.......++++|.++++++.|+++ + .++.+.
T Consensus 60 P~~~a~~le~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~ 137 (224)
T d1i1na_ 60 PHMHAYALELLFDQLHEGA--KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 137 (224)
T ss_dssp HHHHHHHHHHTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred hHHHHHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE
Confidence 444556667764 34444 999999999999999988522222456779999999999754 1 357788
Q ss_pred EecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 274 VISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 274 v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+|....+.+.++||.|++..++.+.+ .++.+.|||||.+++..
T Consensus 138 ~gD~~~~~~~~~~fD~I~~~~~~~~ip-------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 138 VGDGRMGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp ESCGGGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred EeecccccchhhhhhhhhhhcchhhcC-------HHHHhhcCCCcEEEEEE
Confidence 888887777788999999999887655 35788999999999965
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.15 E-value=1.1e-10 Score=112.85 Aligned_cols=98 Identities=16% Similarity=0.249 Sum_probs=81.7
Q ss_pred eEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCC--CCCCCeeEEEecCccc
Q 006834 225 TAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLP--YPARAFDMAHCSGCLI 297 (629)
Q Consensus 225 ~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp--~pd~sFDlV~~s~~L~ 297 (629)
.|||||||+|.++..+++..+.. .+.|+|+++.++..|.++ + .++.+..+|+..+. ++++++|.|++.+.-
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~-~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd- 111 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDI-NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD- 111 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-
T ss_pred eEEEEeccCCHHHHHHHHHCCCC-ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc-
Confidence 79999999999999999987654 578889999999988653 4 46899999987775 788999999987754
Q ss_pred ccccCH--------HHHHHHHHhcccCCcEEEEEe
Q 006834 298 PWYMYD--------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 298 h~~~d~--------~~~L~el~RvLKPGG~liis~ 324 (629)
+|+... ..+|.++.|+|||||.|++.+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 665332 579999999999999999974
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.15 E-value=4.2e-11 Score=119.34 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=81.3
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCC
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYP 283 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~p 283 (629)
.|...+...+|. +|||+|||+|.++..|++. +.. -.++++|.++++++.|+++ + .++.+...|.... ++
T Consensus 76 ~Ii~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~ 151 (250)
T d1yb2a1 76 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-IS 151 (250)
T ss_dssp -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CC
T ss_pred HHHHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cc
Confidence 455666667666 9999999999999999975 332 2466779999999999975 1 3678888887665 56
Q ss_pred CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 284 ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+++||+|++. .+ ++..++.++.++|||||+|++..|..
T Consensus 152 ~~~fD~V~ld-----~p-~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 152 DQMYDAVIAD-----IP-DPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp SCCEEEEEEC-----CS-CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred cceeeeeeec-----CC-chHHHHHHHHHhcCCCceEEEEeCCc
Confidence 7899999863 23 56678999999999999999987743
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.3e-10 Score=118.70 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=87.3
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH---HcC--CCeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL---ERG--VPAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~---erg--~~~~~~v~d~~~ 279 (629)
...|.+.|.+......++ +|||||||+|.++..+++.|.. .++++|.|+.+...++ +++ ..+.+..++...
T Consensus 20 ~~~y~~ai~~~~~~~~~~--~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~ 95 (311)
T d2fyta1 20 TESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEE 95 (311)
T ss_dssp HHHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHHhccccCCcC--EEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHH
Confidence 356677776665554444 8999999999999999999865 4567799998865443 223 458888899999
Q ss_pred CCCCCCCeeEEEecCcccccccC--HHHHHHHHHhcccCCcEEEE
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d--~~~~L~el~RvLKPGG~lii 322 (629)
++++.++||+|++....++...+ ...++....++|||||+++-
T Consensus 96 l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 96 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99999999999997665444433 45678888999999999974
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.13 E-value=1.3e-10 Score=115.88 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=81.0
Q ss_pred HHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCCCCCC
Q 006834 210 DNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKRLPYP 283 (629)
Q Consensus 210 ~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~Lp~p 283 (629)
..+.+.+.... .++|||||||+|.++..|+++.+. +.++++|+ +++++.|+++ + ..+.+...|... +.+
T Consensus 71 ~~~~~~~d~~~--~~~vlDvG~G~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p 145 (256)
T d1qzza2 71 EAPADAYDWSA--VRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP 145 (256)
T ss_dssp HHHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred HHHHhcCCCcc--CCEEEEECCCCCHHHHHHHHhhcC-cEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc
Confidence 34444444333 348999999999999999998653 24567798 6677777653 3 346777666543 444
Q ss_pred CCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEeC
Q 006834 284 ARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~P 325 (629)
.+||+|++.++||+|.++ ...+|++++++|||||.|+|..+
T Consensus 146 -~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 146 -VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 469999999999999733 24689999999999999999753
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=1e-10 Score=120.52 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cC--CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RG--VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg--~~~~~~v~d~~~ 279 (629)
..|.+.|.+......++ +|||||||+|.++..++++|.. .++++|.++ +++.|++ ++ ..+.+..++...
T Consensus 24 ~~y~~aI~~~~~~~~~~--~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~ 98 (328)
T d1g6q1_ 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAK--HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCcC--EEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh
Confidence 44555565544443444 8999999999999999999865 456779986 4555553 33 358888999999
Q ss_pred CCCCCCCeeEEEecCccccccc--CHHHHHHHHHhcccCCcEEEE
Q 006834 280 LPYPARAFDMAHCSGCLIPWYM--YDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~lii 322 (629)
+++++++||+|++....++... ....++.++.|+|||||.++-
T Consensus 99 l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 9999999999999666544432 357789999999999999863
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=4.9e-11 Score=123.25 Aligned_cols=117 Identities=12% Similarity=0.011 Sum_probs=89.0
Q ss_pred CchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc--------------CC
Q 006834 203 NGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER--------------GV 268 (629)
Q Consensus 203 ~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er--------------g~ 268 (629)
.........+.+.+...++. +|||+|||+|.++..++..... ..++|+|+++.+++.|++. ..
T Consensus 134 e~~~~~~~~~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~-~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~ 210 (328)
T d1nw3a_ 134 ETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210 (328)
T ss_dssp CCCHHHHHHHHHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCC-SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhHHHHHHHHHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 33455566777777776666 9999999999999998875321 2456789999999998752 24
Q ss_pred CeEEEEecCCCCCCCCCCe--eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 269 PAMIGVISSKRLPYPARAF--DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 ~~~~~v~d~~~Lp~pd~sF--DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++.+.++|...+++.+..| |+|+++. +.|.. +....|.++.|+|||||.++...
T Consensus 211 ~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~-~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 211 EYTLERGDFLSEEWRERIANTSVIFVNN-FAFGP-EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CEEEEECCTTSHHHHHHHHHCSEEEECC-TTTCH-HHHHHHHHHHTTCCTTCEEEESS
T ss_pred ceEEEECcccccccccccCcceEEEEcc-eecch-HHHHHHHHHHHhCCCCcEEEEec
Confidence 6889999998888776555 6666644 44554 67789999999999999998753
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.10 E-value=1.7e-10 Score=113.05 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=83.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---CCCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---GVPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---g~~~~~~v~d~~~Lp~ 282 (629)
......+.+.+...++. +|||||||+|.+++.|++.+..+ +++|.++++++.|+++ ..++.+..+|......
T Consensus 56 p~~~a~ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V---~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~ 130 (224)
T d1vbfa_ 56 LNLGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKV---VSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE 130 (224)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEE---EEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG
T ss_pred hhhHHHHHHHhhhcccc--eEEEecCCCCHHHHHHHHHhccc---ccccccHHHHHHHHHHHhcccccccccCchhhcch
Confidence 44455667777777766 99999999999999999987654 5559999999999876 3568888888655444
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
..++||.|++..++.+.+ ..+.+.|||||.|++-.
T Consensus 131 ~~~pfD~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 131 EEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp GGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred hhhhHHHHHhhcchhhhh-------HHHHHhcCCCCEEEEEE
Confidence 467899999988886665 34567899999999853
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=3.6e-10 Score=113.46 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=85.0
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCCC
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRLP 281 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~Lp 281 (629)
-+..|...+...++. +|||+|||+|.++..|++.......++++|+++++++.|+++ +. .+.+...|. ...
T Consensus 91 d~~~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~~ 167 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI-SEG 167 (266)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GGC
T ss_pred HHHHHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-ccc
Confidence 355777888888777 999999999999999998632223567779999999999875 22 345554443 234
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
++...||.|+. +.+ ++..++.++.++|||||.|++..|..
T Consensus 168 ~~~~~~D~V~~-----d~p-~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 168 FDEKDVDALFL-----DVP-DPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp CSCCSEEEEEE-----CCS-CGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred ccccceeeeEe-----cCC-CHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 66788999874 444 78889999999999999999987643
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.05 E-value=2.8e-10 Score=116.58 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=82.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH---HcC--CCeEEEEecCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL---ERG--VPAMIGVISSKRL 280 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~---erg--~~~~~~v~d~~~L 280 (629)
..|.+.|.+......++ +|||||||+|.++..+++.|.. .++++|.++.+....+ .++ ..+.+..++...+
T Consensus 19 ~~y~~ai~~~~~~~~~~--~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~ 94 (316)
T d1oria_ 19 LTYRNSMFHNRHLFKDK--VVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 94 (316)
T ss_dssp HHHHHHHHTCHHHHTTC--EEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccCCcC--EEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc
Confidence 45555554433333344 8999999999999999999865 3466799875433222 233 3488899999999
Q ss_pred CCCCCCeeEEEecCccccccc--CHHHHHHHHHhcccCCcEEEE
Q 006834 281 PYPARAFDMAHCSGCLIPWYM--YDGLYLLEVDRVLRPGGYWIL 322 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~--d~~~~L~el~RvLKPGG~lii 322 (629)
+++.++||+|++....++... ....++..+.|+|||||.++-
T Consensus 95 ~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 95 ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 999999999998666544432 357899999999999999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.6e-10 Score=117.56 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=82.5
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----------------CCCeE
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----------------GVPAM 271 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----------------g~~~~ 271 (629)
+..|..++...+|. +|||+|||+|.++..|+.. +..+ .++++|+++++++.|+++ ..++.
T Consensus 87 ~~~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G-~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~ 163 (324)
T d2b25a1 87 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQG-RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 163 (324)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred HHHHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCc-EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcccccee
Confidence 55677777887777 9999999999999999985 3322 456679999999999864 13577
Q ss_pred EEEecCCCCC--CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 272 IGVISSKRLP--YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 272 ~~v~d~~~Lp--~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
+...|..... +++..||.|+. +++ +|..++.++.++|||||.|++..|.+
T Consensus 164 ~~~~di~~~~~~~~~~~fD~V~L-----D~p-~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 164 FIHKDISGATEDIKSLTFDAVAL-----DML-NPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp EEESCTTCCC-------EEEEEE-----CSS-STTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred EEecchhhcccccCCCCcceEee-----cCc-CHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 8888876553 45778999986 233 45568999999999999999987754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.00 E-value=8.9e-10 Score=108.05 Aligned_cols=114 Identities=8% Similarity=-0.004 Sum_probs=81.3
Q ss_pred hHHHHHHHHhhc---CccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecC
Q 006834 205 ADAYIDNINELI---PLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG---VPAMIGVISS 277 (629)
Q Consensus 205 a~~~i~~I~~lL---~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~ 277 (629)
.......|..-+ +..+|. +|||+|||+|.++..|++. |..+ .++++|+++.+++.++++. .+......+.
T Consensus 55 rSKlaa~i~~~l~~l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G-~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~ 131 (227)
T d1g8aa_ 55 RSKLGAAIMNGLKNFPIKPGK--SVLYLGIASGTTASHVSDIVGWEG-KIFGIEFSPRVLRELVPIVEERRNIVPILGDA 131 (227)
T ss_dssp TCHHHHHHHTTCCCCCCCTTC--EEEEETTTSTTHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHSSCTTEEEEECCT
T ss_pred ccHHHHHHHccccccccCCCC--EEEEeccCCCHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC
Confidence 344455555443 344555 9999999999999999986 3332 4677899999999998652 3455556655
Q ss_pred CC---CCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 278 KR---LPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 278 ~~---Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.. ++.....+|+|++.. +.+.+...++.++.+.|||||+++++.
T Consensus 132 ~~~~~~~~~~~~vD~i~~d~---~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 132 TKPEEYRALVPKVDVIFEDV---AQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp TCGGGGTTTCCCEEEEEECC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccccccccceEEEEEEc---cccchHHHHHHHHHHhcccCCeEEEEE
Confidence 33 334457899998743 223356789999999999999999974
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.94 E-value=6.6e-10 Score=105.76 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=74.0
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccccCCCcCH
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDI 561 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~ 561 (629)
.|||+|||+|.|+.+|.+. +.+|.++.++..+.+|++ -.+....+.++..+.+||+|++.+++.... +.
T Consensus 39 ~vLDiGcG~G~~~~~~~~~-------~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d~ 107 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---DP 107 (208)
T ss_dssp CEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---CH
T ss_pred eEEEECCCCcccccccceE-------EEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---cc
Confidence 4999999999999998653 345666789999999985 455566677766669999999988887664 47
Q ss_pred HHHHHHHhhcccCCcEEEEEe
Q 006834 562 TNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 562 ~~~l~e~dRiLrPgG~~i~~d 582 (629)
+.+|.|+.|+|||||.++|.+
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEe
Confidence 889999999999999999975
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.90 E-value=1.2e-09 Score=109.49 Aligned_cols=100 Identities=22% Similarity=0.332 Sum_probs=73.0
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCC-ccc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYP-RTY 543 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp-~t~ 543 (629)
.|.++. .|||+|||+|+++.+|+++ +. +|+.+|.++.++..+.++ || +.+++ |+ +.++ +| .+|
T Consensus 64 ~l~~~~--~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-~~l~-~~~~sf 136 (282)
T d2o57a1 64 VLQRQA--KGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-LEIP-CEDNSY 136 (282)
T ss_dssp CCCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT-TSCS-SCTTCE
T ss_pred CCCCCC--EEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccc-cccc-cccccc
Confidence 456665 5999999999999999875 53 345556555677666654 55 34444 32 3333 44 899
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
|+|.+..+|.... +.+.+|.|+.|+|||||.+++.|.
T Consensus 137 D~V~~~~~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 137 DFIWSQDAFLHSP---DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp EEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhccchhhhcc---CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999988876554 568899999999999999999753
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.89 E-value=9.3e-10 Score=105.99 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=72.9
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceeccccccCCCCC-cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQDWCEAFSTYP-RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~~~~e~f~~yp-~t~Dl~H 547 (629)
|..+. .|||+|||.|.++.+|++.+- +|+.+|.++++++.+.+ .|+ +..++.=.+.++ +| .+||+|+
T Consensus 13 l~~~~--rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~ 86 (231)
T d1vl5a_ 13 LKGNE--EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVT 86 (231)
T ss_dssp CCSCC--EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEE
T ss_pred CCCcC--EEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccc-cccccccccc
Confidence 66655 499999999999999998864 45566666678777644 354 334442234433 44 8999999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|..++... -+.+.+|.|+.|+|||||+++|.+
T Consensus 87 ~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 87 CRIAAHHF---PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccc---CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 98777644 357899999999999999999975
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.89 E-value=3.9e-09 Score=102.58 Aligned_cols=108 Identities=16% Similarity=0.117 Sum_probs=84.8
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~ 278 (629)
+......+.+.+...++. +|||||||+|+.++.|++. +..+ +++|.++.+++.|+++ + .++.+..+|..
T Consensus 63 ~P~~~a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V---~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~ 137 (215)
T d1jg1a_ 63 APHMVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDV---YTIERIPELVEFAKRNLERAGVKNVHVILGDGS 137 (215)
T ss_dssp CHHHHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCE---EEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred hhhhHHHHHHhhccCccc--eEEEecCCCChhHHHHHHhhCcee---EEEeccHHHHHHHHHHHHHcCCceeEEEECccc
Confidence 355566778888887776 9999999999999999876 4334 4559999999999865 3 57889998877
Q ss_pred CCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 279 RLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
......+.||.|++..+..+.+ . .+...|+|||.+++..
T Consensus 138 ~g~~~~~pfD~Iiv~~a~~~ip---~----~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 138 KGFPPKAPYDVIIVTAGAPKIP---E----PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCGGGCCEEEEEECSBBSSCC---H----HHHHTEEEEEEEEEEE
T ss_pred cCCcccCcceeEEeecccccCC---H----HHHHhcCCCCEEEEEE
Confidence 6555678999999988886655 2 3556799999999854
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.89 E-value=8.6e-10 Score=106.66 Aligned_cols=95 Identities=20% Similarity=0.343 Sum_probs=72.4
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC-cccceeecc-ccccccCCCc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP-RTYDLIHAS-GVFSIYQDRC 559 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp-~t~Dl~H~~-~~fs~~~~~c 559 (629)
.|||+|||+|.++..|++++. .|+.+|.++.+++.+.+++..-.+..=.+.++ || .+||+|-|. +++... -
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~-~~~~~fD~ii~~~~~~~~~---~ 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYV---E 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHC---S
T ss_pred EEEEECCCCchhcccccccce---EEEEeecccccccccccccccccccccccccc-cccccccceeeecchhhhh---h
Confidence 499999999999999999875 45666777789999999987443332223443 55 899998874 344432 2
Q ss_pred CHHHHHHHHhhcccCCcEEEEEeC
Q 006834 560 DITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+.+.+|.|+.|+|||||.++++.+
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 467899999999999999999854
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.88 E-value=9.4e-10 Score=106.97 Aligned_cols=100 Identities=20% Similarity=0.351 Sum_probs=76.4
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc--cceeccccccCCCCC-ccccee
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL--IGTYQDWCEAFSTYP-RTYDLI 546 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl--i~~~~~~~e~f~~yp-~t~Dl~ 546 (629)
.+++|.. |||+|||+|.++..|+++.- +|+.+|.++.+++.+.++ |+ +..++.=.+.++ +| .+||+|
T Consensus 13 ~~~~~~r--ILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v 86 (234)
T d1xxla_ 13 ECRAEHR--VLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDII 86 (234)
T ss_dssp TCCTTCE--EEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEE
T ss_pred CCCCCCE--EEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccccccccccccccccc-cccccccee
Confidence 4777764 99999999999999998753 677888887888776544 43 344442234433 55 999999
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.|.++|... .+.+.+|.|+.|+|||||++++.+
T Consensus 87 ~~~~~l~~~---~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 87 TCRYAAHHF---SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeceeecc---cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 998877643 357999999999999999999964
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.6e-08 Score=101.65 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=84.8
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~ 279 (629)
++.+++...+.+.. .+.+|||+|||+|..+..|+..... ..++++|+|+.+++.|+++ +. ++.+.+.|...
T Consensus 94 TE~lv~~~l~~~~~---~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~ 169 (274)
T d2b3ta1 94 TECLVEQALARLPE---QPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS 169 (274)
T ss_dssp HHHHHHHHHHHSCS---SCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG
T ss_pred hhhhhhhHhhhhcc---cccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc
Confidence 34456555554433 3457999999999999999987654 3677889999999999865 44 58888877654
Q ss_pred CCCCCCCeeEEEecCccccccc----------C--------------HHHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYM----------Y--------------DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~----------d--------------~~~~L~el~RvLKPGG~liis~ 324 (629)
++++++||+|+|+....+-.+ + ...++.++.+.|+|||.+++..
T Consensus 170 -~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi 237 (274)
T d2b3ta1 170 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 237 (274)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred -ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 456789999999866543210 0 1247889999999999999974
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=1e-09 Score=110.82 Aligned_cols=109 Identities=10% Similarity=0.112 Sum_probs=78.4
Q ss_pred HHHhhcc--cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHH----HhhcccceeccccccCCCCC
Q 006834 468 YKKIDGL--FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAI----YERGLIGTYQDWCEAFSTYP 540 (629)
Q Consensus 468 y~~~~~~--~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~----~ergli~~~~~~~e~f~~yp 540 (629)
+..++.. |.+|. .|||+|||.|++|.+++++ ++- |+.++.+++++..+ .+.|+....+.-...+...|
T Consensus 41 ~~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~~---v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~ 115 (280)
T d2fk8a1 41 VDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVN---VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA 115 (280)
T ss_dssp HHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC
T ss_pred HHHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhCcee---EEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc
Confidence 4444443 55665 4999999999999999865 542 33333344565554 45588655554456667788
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+||.|-+.++|.....+ +.+.+|.++.|+|||||.++|.+
T Consensus 116 ~~fD~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 116 EPVDRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CCCSEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cchhhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEEE
Confidence 999999999998765443 67899999999999999999853
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.85 E-value=1.4e-09 Score=106.16 Aligned_cols=117 Identities=19% Similarity=0.259 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceec-cc
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQ-DW 532 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~-~~ 532 (629)
+.+...+..+.+++..........|||+|||+|.++..|++++. +|+.+|.+++++..+.++ |+ +..+. |+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~ 97 (251)
T d1wzna1 21 ERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV 97 (251)
T ss_dssp HTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhh
Confidence 44444555566666545555566899999999999999999875 677888888899988776 44 22322 21
Q ss_pred cccCCCCCcccceeecc-ccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 533 CEAFSTYPRTYDLIHAS-GVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 533 ~e~f~~yp~t~Dl~H~~-~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+.+ +++..||+|.|. ++|... +..++..+|.++.|+|||||.+||.
T Consensus 98 -~~l-~~~~~fD~I~~~~~~~~~~-~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 98 -LEI-AFKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp -GGC-CCCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -hhc-ccccccchHhhhhhhhhcC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 233 355899999984 455543 3346678999999999999999985
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=1.2e-09 Score=110.77 Aligned_cols=112 Identities=11% Similarity=0.132 Sum_probs=80.8
Q ss_pred HHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-C--eEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCc
Q 006834 465 MTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-P--VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPR 541 (629)
Q Consensus 465 v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~--v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~ 541 (629)
++.+.+.+ .|++|.. |||+|||.||+|.++++. + |..+++++.+.. ...+.+.+.|+.+-+.--+..+...|.
T Consensus 51 ~~~~~~~l-~l~~G~~--VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~-~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (285)
T d1kpga_ 51 IDLALGKL-GLQPGMT--LLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQAN-HVQQLVANSENLRSKRVLLAGWEQFDE 126 (285)
T ss_dssp HHHHHTTT-TCCTTCE--EEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHH-HHHHHHHTCCCCSCEEEEESCGGGCCC
T ss_pred HHHHHHHc-CCCCCCE--EEEecCcchHHHHHHHhcCCcceEEEeccHHHHH-HHHHHHHhhhhhhhhHHHHhhhhcccc
Confidence 33444444 3777765 999999999999988764 4 566666665543 344566777886655544456667789
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+||-|=+.+.|..-.+ -+...+|.++.|+|||||.+++.
T Consensus 127 ~fD~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 127 PVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp CCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cccceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEE
Confidence 9999888888865433 24578999999999999999974
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=1.3e-09 Score=104.08 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=79.9
Q ss_pred HHHHHHHHhhc-ccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCC
Q 006834 463 DRMTYYKKIDG-LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFS 537 (629)
Q Consensus 463 ~~v~~y~~~~~-~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~ 537 (629)
.++.+...++. .|.++. .|||+|||+|.++..|++.+. +|+.+|.+++++..+.++ |..- ...|....
T Consensus 22 ~~~~~~~~~~~~~l~~~~--~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~--~~~~~d~~ 94 (226)
T d1ve3a1 22 SRIETLEPLLMKYMKKRG--KVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNV--EFIVGDAR 94 (226)
T ss_dssp HHHHHHHHHHHHSCCSCC--EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCC--EEEECCTT
T ss_pred HHHHHHHHHHHHhcCCCC--EEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccc--cccccccc
Confidence 33444444443 344443 499999999999999999875 566677777899888765 3311 12233333
Q ss_pred C--CC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 538 T--YP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 538 ~--yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
. +| .+||+|.|..+|....+ .++..+|.|+-|+|||||.++|.+.
T Consensus 95 ~l~~~~~~fD~I~~~~~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 95 KLSFEDKTFDYVIFIDSIVHFEP-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp SCCSCTTCEEEEEEESCGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccCcCceEEEEecchhhCCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 3 33 89999999888776532 3577899999999999999999764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.84 E-value=6.1e-09 Score=101.70 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=82.0
Q ss_pred HHHHHHHHhhcC--ccCCCCCeEEEeCCCCchHHHHHHHc----CC-cEeEEEeecCcHHHHHHHHHc----------CC
Q 006834 206 DAYIDNINELIP--LTGGNIRTAVDTGCGVASWGAYLLKR----DI-LTMSFARRDTHEAQVQFALER----------GV 268 (629)
Q Consensus 206 ~~~i~~I~~lL~--~~~g~~~~VLDIGCGtG~~a~~La~~----g~-~~v~i~gvDiS~~~i~~A~er----------g~ 268 (629)
......+.+.|. ..++. +|||||||+|++++.|++. +. ....++++|.++++++.|+++ ..
T Consensus 64 P~~~a~~l~~L~~~l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~ 141 (223)
T d1r18a_ 64 PHMHAFALEYLRDHLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG 141 (223)
T ss_dssp HHHHHHHHHHTTTTCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence 444556666663 44444 9999999999999888875 21 112456679999999999764 13
Q ss_pred CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 269 PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 ~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
++.+..+|......+.+.||.|++...+.+.+ ..+.+.|||||.+++..
T Consensus 142 nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 142 QLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPV 190 (223)
T ss_dssp SEEEEESCGGGCCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred EEEEEecccccccccccceeeEEEEeechhch-------HHHHHhcCCCcEEEEEE
Confidence 68888888877666678999999999886655 34678999999998854
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=2e-09 Score=105.44 Aligned_cols=99 Identities=12% Similarity=0.181 Sum_probs=73.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl 545 (629)
|.+|. .|||+|||+|+++.+|+++ +..| +.+|.++.++..+.++ |+ |...+ |+-+ + ..+.+||+
T Consensus 31 l~pg~--~VLDiGCG~G~~~~~la~~~~~~v---~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~ 103 (245)
T d1nkva_ 31 MKPGT--RILDLGSGSGEMLCTWARDHGITG---TGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-Y-VANEKCDV 103 (245)
T ss_dssp CCTTC--EEEEETCTTCHHHHHHHHHTCCEE---EEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-C-CCSSCEEE
T ss_pred CCCCC--EEEEEcCCCCHHHHHHHHhcCCEE---EEEecccchhhHHHHHHHHhhccccchhhhhHHhh-c-cccCceeE
Confidence 67775 4999999999999999764 6644 4456666788777666 76 33333 3322 2 23489999
Q ss_pred eeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 546 IHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
|+|.+++.... +.+.+|.||.|+|||||.+++.+.
T Consensus 104 v~~~~~~~~~~---d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 104 AACVGATWIAG---GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp EEEESCGGGTS---SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEEEehhhccC---CHHHHHHHHHHHcCcCcEEEEEec
Confidence 99988876554 458999999999999999999753
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=4.1e-09 Score=111.45 Aligned_cols=115 Identities=10% Similarity=-0.035 Sum_probs=79.2
Q ss_pred chHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcC--------------C
Q 006834 204 GADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERG--------------V 268 (629)
Q Consensus 204 ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg--------------~ 268 (629)
-...++..+.+.+...+++ +|||||||+|.++..++.. +.. .++|+|+++.|++.|+++. .
T Consensus 200 l~~~~i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~--~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~ 275 (406)
T d1u2za_ 200 LLPNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275 (406)
T ss_dssp BCHHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC
T ss_pred CCHHHHHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 3455677777777777766 9999999999999999876 432 4567799999999998642 1
Q ss_pred CeEEE-EecCCCCCCC---CCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 269 PAMIG-VISSKRLPYP---ARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 269 ~~~~~-v~d~~~Lp~p---d~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...+. ..+....++. -..+|+|+++. +.+.. +....|.++.|+|||||.++.+.
T Consensus 276 ~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~-~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFDE-DLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCCH-HHHHHHHHHHTTCCTTCEEEESS
T ss_pred cceeeeeechhhccccccccccceEEEEec-ccCch-HHHHHHHHHHHhcCCCcEEEEec
Confidence 12222 1222221111 13568888754 33443 67789999999999999998753
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.78 E-value=2.5e-09 Score=106.15 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=92.2
Q ss_pred HHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCCcc
Q 006834 467 YYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYPRT 542 (629)
Q Consensus 467 ~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp~t 542 (629)
....++..+....-.+|||+|||+|.++.+|+.+.. -+|..+|.++.++..+.++ +.+-.++.=.+.|..-+.+
T Consensus 81 ~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T d1xtpa_ 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCc
Confidence 344555555555666799999999999999876522 1334445566788888766 2233333212334333489
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHH----------------HHHHHHHHHhcCCCeEEEeec
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVE----------------MLVKIRSITEGMRWKSQIMDH 606 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~----------------~~~~~~~~~~~l~w~~~~~~~ 606 (629)
||+|.+..+|....+. ++..+|.++-|+|||||+++|.|... ....++++++.--+++.-.+.
T Consensus 159 fD~I~~~~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred cceEEeeccccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 9999998888655432 45678999999999999999975421 145677887777777654443
Q ss_pred C
Q 006834 607 E 607 (629)
Q Consensus 607 e 607 (629)
+
T Consensus 238 q 238 (254)
T d1xtpa_ 238 Q 238 (254)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.77 E-value=3.1e-09 Score=102.74 Aligned_cols=104 Identities=11% Similarity=0.186 Sum_probs=83.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cccceeccccccCCCCC-ccccee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFSTYP-RTYDLI 546 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~~yp-~t~Dl~ 546 (629)
+.++. .|||+|||+|..+.+|++. +- .+|+.+|.++.+++.+.++ +....++..+..+..+| ..+|++
T Consensus 37 ~~~~~--~vLDlGCGtG~~~~~l~~~~~~~~--~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i 112 (225)
T d1im8a_ 37 VTADS--NVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMV 112 (225)
T ss_dssp CCTTC--EEEEESCTTCHHHHHHHHTCCCSS--CEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEE
T ss_pred cCCCC--EEEEeccchhhHHHHHHHhhcCCC--CceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceee
Confidence 34454 5999999999998888753 22 3778889988999999876 67777777778888888 889999
Q ss_pred eccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 547 HASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 547 H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.+..++... +.-+...+|.||-|+|+|||.+|+.|.
T Consensus 113 ~~~~~l~~~-~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 113 ILNFTLQFL-PPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp EEESCGGGS-CGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeeecccc-ChhhHHHHHHHHHHhCCCCceeecccc
Confidence 997776553 334778899999999999999999863
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.7e-08 Score=98.13 Aligned_cols=124 Identities=9% Similarity=0.056 Sum_probs=92.4
Q ss_pred cCCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 188 EGHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 188 ~g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
+|-.+.+.-..++|..+.......+.+.+. + +.+|||+|||+|.++..+++++.. .++++|+++.+++.++++
T Consensus 77 ~g~~~~~d~~~~~f~~~~~~er~ri~~~~~--~--g~~VlD~~aG~G~~~l~~a~~~~~--~V~avd~n~~a~~~~~~N~ 150 (260)
T d2frna1 77 NGIKYKLDVAKIMFSPANVKERVRMAKVAK--P--DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENI 150 (260)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHHCC--T--TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHH
T ss_pred cCeeEEeccccccEecCCHHHHHHHHhhcC--C--ccEEEECcceEcHHHHHHHHhCCc--EEEEecCCHHHHHHHHHHH
Confidence 455555655567777776666666766653 2 349999999999999999988742 467779999999999864
Q ss_pred ---CC--CeEEEEecCCCCCCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 267 ---GV--PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 267 ---g~--~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+. .+.+..+|...++. .+.||.|++... .....++.++.++|+|||.+.+.
T Consensus 151 ~~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p-----~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 151 HLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp HHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred HHhCCCceEEEEEcchHHhcc-CCCCCEEEECCC-----CchHHHHHHHHhhcCCCCEEEEE
Confidence 32 47888888877653 578999987532 13456888899999999998764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=4.2e-09 Score=105.19 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=66.7
Q ss_pred CCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHHhhcc-cceeccccccCCCCCcccceeecccccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIYERGL-IGTYQDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~ergl-i~~~~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
..+-.+|||+|||.|.+..+|++. ++ +++.+|.++.++..+.++.- +...+.=.+.++.-+.+||+|.+...+.
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 158 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC 158 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH
Confidence 344557999999999999999876 44 34555777789998888754 2322211234433349999998744332
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
-+.|+.|||||||.+++..+
T Consensus 159 ----------~~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 159 ----------KAEELARVVKPGGWVITATP 178 (268)
T ss_dssp ----------CHHHHHHHEEEEEEEEEEEE
T ss_pred ----------HHHHHHHHhCCCcEEEEEee
Confidence 16799999999999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.75 E-value=3.6e-09 Score=107.32 Aligned_cols=111 Identities=11% Similarity=0.119 Sum_probs=76.5
Q ss_pred HHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCch----HHHHhhcccceeccccccCCCC
Q 006834 465 MTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTL----GAIYERGLIGTYQDWCEAFSTY 539 (629)
Q Consensus 465 v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l----~~~~ergli~~~~~~~e~f~~y 539 (629)
++...+.+ .|.+|.. |||+|||.||++.+|+++ ++-|.- ++.+.+++ ..+.+.||....+.-+..+.+.
T Consensus 50 ~~~~~~~l-~l~~G~~--VLDiGCG~G~~~~~~a~~~g~~v~g---it~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~ 123 (291)
T d1kpia_ 50 RKLALDKL-NLEPGMT--LLDIGCGWGSTMRHAVAEYDVNVIG---LTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF 123 (291)
T ss_dssp HHHHHHTT-CCCTTCE--EEEETCTTSHHHHHHHHHHCCEEEE---EESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred HHHHHHhc-CCCCCCE--EEEecCcchHHHHHHHHhcCcceee---ccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence 44444444 3677764 999999999999999754 653332 23333444 4455668866555334455555
Q ss_pred CcccceeeccccccccCCC------cCHHHHHHHHhhcccCCcEEEEE
Q 006834 540 PRTYDLIHASGVFSIYQDR------CDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 540 p~t~Dl~H~~~~fs~~~~~------c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+.+||.|=+.++|..-.+. -+.+.+|.++.|+|||||.+++.
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 6899999998888754332 24678999999999999999985
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.75 E-value=1.4e-08 Score=94.89 Aligned_cols=128 Identities=14% Similarity=0.164 Sum_probs=82.4
Q ss_pred CCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc--
Q 006834 189 GHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-- 266 (629)
|.++.+|.+ + ....+...+.+.+++...-..+.+|||+|||+|.++..++.+|..++ .+|.++.+++.++++
T Consensus 11 g~~l~~~~~-~--Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv---~vD~~~~a~~~~~~N~~ 84 (171)
T d1ws6a1 11 GVALKVPAS-A--RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAV---LVEKDPEAVRLLKENVR 84 (171)
T ss_dssp TCEECCCTT-C--CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEE---EECCCHHHHHHHHHHHH
T ss_pred CCEeCCCCC-C--CCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhh---hcccCHHHHhhhhHHHH
Confidence 444555532 1 23344455555555543222344899999999999999999987544 569999999999864
Q ss_pred --CCCeEEEEecCCC----CCCCCCCeeEEEecCcccccccCHHHHHHHH--HhcccCCcEEEEEeC
Q 006834 267 --GVPAMIGVISSKR----LPYPARAFDMAHCSGCLIPWYMYDGLYLLEV--DRVLRPGGYWILSGP 325 (629)
Q Consensus 267 --g~~~~~~v~d~~~----Lp~pd~sFDlV~~s~~L~h~~~d~~~~L~el--~RvLKPGG~liis~P 325 (629)
+....+...+... ......+||+|++...+ ..+....+.++ ..+|+|||++++..+
T Consensus 85 ~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY---~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 85 RTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY---AMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT---TSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred hhccccceeeeehhcccccccccCCccceeEEcccc---ccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 4544555444322 22446789999997644 21322334433 358999999998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.72 E-value=2.2e-08 Score=95.21 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCCch----HHHHHHHc---CCcEeEEEeecCcHHHHHHHHHc--------CC------------------
Q 006834 222 NIRTAVDTGCGVAS----WGAYLLKR---DILTMSFARRDTHEAQVQFALER--------GV------------------ 268 (629)
Q Consensus 222 ~~~~VLDIGCGtG~----~a~~La~~---g~~~v~i~gvDiS~~~i~~A~er--------g~------------------ 268 (629)
...+|+++|||+|. ++..|.+. ....+.|.++|+++.+++.|++. ..
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 34589999999996 44444432 11235788999999999999731 00
Q ss_pred ----------CeEEEEecCCCC-CCCCCCeeEEEecCcccccccC-HHHHHHHHHhcccCCcEEEEE
Q 006834 269 ----------PAMIGVISSKRL-PYPARAFDMAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 269 ----------~~~~~v~d~~~L-p~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis 323 (629)
.+.+...+.... +.+.+.||+|+|.++|+++... ..+++..+.+.|+|||+|++-
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 012222222221 2345789999999999887744 357999999999999998875
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=6.1e-09 Score=100.50 Aligned_cols=124 Identities=18% Similarity=0.175 Sum_probs=86.4
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c--cceeccccccCCCCCcccceeeccccc
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L--IGTYQDWCEAFSTYPRTYDLIHASGVF 552 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l--i~~~~~~~e~f~~yp~t~Dl~H~~~~f 552 (629)
.-..|||+|||.|.++.+|+++.. -.|..+|.+++++..+.++- . +..++.=.+.+..-+.+||+|.+.+++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 345699999999999999876643 24455566678998887763 2 222221113344334899999998888
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------H-----HHHHHHHHHhcCCCeEEEee
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------E-----MLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~-----~~~~~~~~~~~l~w~~~~~~ 605 (629)
....+. ++..+|.++-|+|||||.+++.|.. + ....++++++.--+++.-.+
T Consensus 138 ~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 138 GHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp GGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred ccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 755432 3567999999999999999997432 1 26778888888888765433
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.67 E-value=1.1e-08 Score=99.85 Aligned_cols=95 Identities=19% Similarity=0.302 Sum_probs=73.5
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc-cceeccccccCCCC--Ccccceeecc-ccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQDWCEAFSTY--PRTYDLIHAS-GVF 552 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~~~~e~f~~y--p~t~Dl~H~~-~~f 552 (629)
++|||+|||+|.++..|++++. +|+.+|.++.++..+.+| |+ +..+ |..+..+ +++||+|=|. ++|
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~---~~d~~~~~~~~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLA---CQDISNLNINRKFDLITCCLDST 112 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEE---CCCGGGCCCSCCEEEEEECTTGG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceee---ccchhhhcccccccccceeeeee
Confidence 4699999999999999999876 667889998999988775 44 3333 2333333 4899987653 566
Q ss_pred cccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 553 SIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 553 s~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
....+.-++..+|.++.|.|+|||.|||.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 66556667788999999999999999974
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=5.4e-08 Score=99.83 Aligned_cols=121 Identities=12% Similarity=-0.040 Sum_probs=84.8
Q ss_pred CCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEE
Q 006834 199 TTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMI 272 (629)
Q Consensus 199 t~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~ 272 (629)
+.+..........+.+++. + +.+|||+|||+|.++..++..|.. .++++|+++.+++.|+++ +. ++.+
T Consensus 126 tG~flDqr~~r~~~~~~~~--~--g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~ 199 (324)
T d2as0a2 126 TGFFLDQRENRLALEKWVQ--P--GDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKF 199 (324)
T ss_dssp SCCCSTTHHHHHHHGGGCC--T--TCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred cCcccchhhHHHHHHhhcC--C--CCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCcccee
Confidence 3343444555556655543 2 349999999999999999998764 457779999999999864 33 4678
Q ss_pred EEecCCC----CCCCCCCeeEEEecCccccccc-C-------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 273 GVISSKR----LPYPARAFDMAHCSGCLIPWYM-Y-------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 273 ~v~d~~~----Lp~pd~sFDlV~~s~~L~h~~~-d-------~~~~L~el~RvLKPGG~liis~P 325 (629)
.++|... ++....+||+|++......-.. + -..++..+.++|+|||.|++++.
T Consensus 200 ~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 200 IVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp EESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred eechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8877543 2345679999998443211111 1 13478888999999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.61 E-value=9.4e-09 Score=99.41 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=69.2
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc--cceeccccccCCCCCcccceeeccccccccCCCc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL--IGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl--i~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c 559 (629)
+|||+|||+|.++..|++.+- .|+.+|.++++++.+.+|.- +-..+.-.+.+. .|.+||+|.+.++|....
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~--- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID--- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS---
T ss_pred cEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC---
Confidence 399999999999999998753 34555666678888877643 233332122222 359999999999887543
Q ss_pred CHHHHHHHH-hhcccCCcEEEEEe
Q 006834 560 DITNILLEM-DRILRPEGTVIFRD 582 (629)
Q Consensus 560 ~~~~~l~e~-dRiLrPgG~~i~~d 582 (629)
+...+|.|+ +|+|||||.++|..
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEe
Confidence 458899998 59999999999973
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=8.8e-08 Score=93.27 Aligned_cols=121 Identities=7% Similarity=-0.023 Sum_probs=82.0
Q ss_pred eeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhc----c-c-------------c--------------
Q 006834 480 YRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERG----L-I-------------G-------------- 527 (629)
Q Consensus 480 ~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~erg----l-i-------------~-------------- 527 (629)
-..|||+|||.|.++..+++.+. -+|+.+|-++++++.+.++- . + |
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 45699999999999988887765 46777787778888876541 0 0 0
Q ss_pred -----eeccccc--cCCCCC-cccceeeccccccccC-CCcCHHHHHHHHhhcccCCcEEEEEeCHH-------------
Q 006834 528 -----TYQDWCE--AFSTYP-RTYDLIHASGVFSIYQ-DRCDITNILLEMDRILRPEGTVIFRDTVE------------- 585 (629)
Q Consensus 528 -----~~~~~~e--~f~~yp-~t~Dl~H~~~~fs~~~-~~c~~~~~l~e~dRiLrPgG~~i~~d~~~------------- 585 (629)
...+-.. ...+++ .+||+|-+..++.... .+-+...++.++-|+|||||++|+.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 0001111 122344 8999998866665432 23345679999999999999999975321
Q ss_pred ---HHHHHHHHHhcCCCeEE
Q 006834 586 ---MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 586 ---~~~~~~~~~~~l~w~~~ 602 (629)
..+.|+++++.--+++.
T Consensus 210 ~~~~~~~~~~~l~~aGf~v~ 229 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDIE 229 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEEE
T ss_pred cCCCHHHHHHHHHHCCCEEE
Confidence 25677888887777654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.59 E-value=8.8e-08 Score=91.58 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=59.7
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCL 296 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L 296 (629)
+++|||+|||+|.++..++.+|.. .++++|+++.+++.|+++...+.+.+.|...++ ++||+|+++..+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 459999999999999988888865 467889999999999999888999999987764 689999998755
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.58 E-value=4.7e-08 Score=92.50 Aligned_cols=138 Identities=11% Similarity=0.087 Sum_probs=86.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccc--eeccccccCCCCC-cccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIG--TYQDWCEAFSTYP-RTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~--~~~~~~e~f~~yp-~t~Dl~H 547 (629)
+....-.+|||+|||+|.++.+|++..- +|..+|.++..+..+.++ |+-. +..-++..+..++ .+||+|-
T Consensus 48 l~~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii 124 (194)
T d1dusa_ 48 VVVDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKII 124 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEE
T ss_pred CCcCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEE
Confidence 3333445799999999999999987632 445556666677777643 4411 1112233444444 8999999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
++..|... .-.++.++.++.|+|+|||.+++... ......+...++..-+++..+... ..-+||-++|
T Consensus 125 ~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K 193 (194)
T d1dusa_ 125 TNPPIRAG--KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp ECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred EcccEEec--chhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence 87776322 11246689999999999999877432 223344455555554555544322 2457888887
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.55 E-value=4.6e-08 Score=89.36 Aligned_cols=98 Identities=7% Similarity=-0.023 Sum_probs=73.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC-CCCCCCCeeEEEecCc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR-LPYPARAFDMAHCSGC 295 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~-Lp~pd~sFDlV~~s~~ 295 (629)
+.+|||+|||+|.++...+.+|.. .++.+|.++.+++.+++. + ..+.+...|... +....++||+|++...
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 449999999999999999999875 567789999999998864 2 236777777655 3455789999998653
Q ss_pred ccccccC-HHHHHHHH--HhcccCCcEEEEEeC
Q 006834 296 LIPWYMY-DGLYLLEV--DRVLRPGGYWILSGP 325 (629)
Q Consensus 296 L~h~~~d-~~~~L~el--~RvLKPGG~liis~P 325 (629)
+ ... ....+..+ .++|+|||.+++..+
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 2 211 23455544 367999999999754
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.53 E-value=1.3e-08 Score=100.02 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=72.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-------cceec-cccccCCCC-Ccccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-------IGTYQ-DWCEAFSTY-PRTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-------i~~~~-~~~e~f~~y-p~t~Dl 545 (629)
+.++. +|||+|||+|+....+++.+. -+|+.+|.++.++..+.+|-. +-.++ |. ...+.. ..+||+
T Consensus 22 ~~~~~--~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~-~~~~~~~~~~fD~ 96 (252)
T d1ri5a_ 22 TKRGD--SVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-YGRHMDLGKEFDV 96 (252)
T ss_dssp CCTTC--EEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-TTSCCCCSSCEEE
T ss_pred CCCcC--EEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch-hhhcccccccceE
Confidence 34443 699999999999999987765 356777888889999987732 11121 21 112222 379999
Q ss_pred eecccccccc-CCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 546 IHASGVFSIY-QDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 546 ~H~~~~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
|.|.+++-.. .+.-++..+|.++.|+|||||++|++-+
T Consensus 97 V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 97 ISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9986665543 2334567799999999999999999743
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.53 E-value=3.5e-08 Score=98.91 Aligned_cols=99 Identities=11% Similarity=0.102 Sum_probs=69.9
Q ss_pred CCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc-cceeccccccCCCCCcccceeecc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQDWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~~~~e~f~~yp~t~Dl~H~~ 549 (629)
.+-.+|||+|||+|.++..|++. +. +|+.+|.++.++..+.++ |+ +-..+.-.+.+ +++.+||+|+|.
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~~~ 101 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICH 101 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEEEe
Confidence 34457999999999999888763 33 334456666777777655 33 22222112222 346899999999
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
++|.... +.+.+|.++.|+|||||++++.|+
T Consensus 102 ~~l~~~~---d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 102 AFLLHMT---TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp SCGGGCS---SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhhhcCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 8886544 468899999999999999999764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.2e-08 Score=97.33 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=73.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc------cceeccccccCCCCC-cccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL------IGTYQDWCEAFSTYP-RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl------i~~~~~~~e~f~~yp-~t~Dl~H~~~~fs 553 (629)
..|||+|||+|.+|.+|++.+. -+|+.+|.++.++..+.++.- ....+++......+| .+||+|-.+.+.+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 3699999999999999998764 356666767678888877653 223345655566677 7888876555444
Q ss_pred cc--CCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 554 IY--QDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 554 ~~--~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+ .+.-+.+.++.|+-|+|||||.|++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 133 SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 33 334456779999999999999999853
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.51 E-value=2.4e-08 Score=92.58 Aligned_cols=110 Identities=9% Similarity=0.047 Sum_probs=75.3
Q ss_pred HHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cc---------ee-----
Q 006834 465 MTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IG---------TY----- 529 (629)
Q Consensus 465 v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~---------~~----- 529 (629)
+..|+..+. +.++. .|||+|||+|-.+.+|++++. .|+.+|.+++++..+.+|.= -+ .+
T Consensus 9 ~~~~~~~l~-~~~~~--rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T d1pjza_ 9 LQQYWSSLN-VVPGA--RVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 82 (201)
T ss_dssp HHHHHHHHC-CCTTC--EEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred HHHHHHHcC-CCCCC--EEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccc
Confidence 344666554 55665 399999999999999999986 44555666789999888631 00 00
Q ss_pred ccccccC-CCC--C-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 530 QDWCEAF-STY--P-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 530 ~~~~e~f-~~y--p-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.-.+..+ ... + ..||+|.+..+|..... -+...++.+|-|+|||||.+++.
T Consensus 83 ~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 83 EIWCGDFFALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp EEEEECCSSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred ceecccccccccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 0112222 222 2 68999998777754332 34577999999999999998885
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.51 E-value=2.4e-08 Score=98.44 Aligned_cols=107 Identities=25% Similarity=0.350 Sum_probs=70.9
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC--Ce--EEEEecCCCCCCCchHHHHhhcccceeccc-cccCCCCCcccceeec
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY--PV--WVMNVVPFHSNPDTLGAIYERGLIGTYQDW-CEAFSTYPRTYDLIHA 548 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v--~~mnv~~~~~~~~~l~~~~ergli~~~~~~-~e~f~~yp~t~Dl~H~ 548 (629)
.+.....++|||+|||.|.++.+|+++ ++ .+..+ |... ....+.+.+.|+..-+.-. ...|...|..||++.+
T Consensus 75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~-~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~ 152 (253)
T d1tw3a2 75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTV-DTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152 (253)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHH-HHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEE
T ss_pred hcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHH-HHHHHHHHHhhcccchhhccccchhhcccchhheee
Confidence 345577889999999999999999865 33 33332 2111 1223344455763322211 1335667789999998
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
..++-.+.+. +...+|.++-|+|||||.++|.|.
T Consensus 153 ~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 153 SFVLLNWPDH-DAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccccCCch-hhHHHHHHHHHhcCCCcEEEEEec
Confidence 8887665432 345789999999999999999753
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.48 E-value=1.7e-08 Score=101.42 Aligned_cols=101 Identities=14% Similarity=0.212 Sum_probs=70.5
Q ss_pred CeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccce-----ec--cccc--cCCCCCcccce
Q 006834 479 RYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGT-----YQ--DWCE--AFSTYPRTYDL 545 (629)
Q Consensus 479 ~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~-----~~--~~~e--~f~~yp~t~Dl 545 (629)
..++|||+|||+|.++..|++.+. +|+.+|.++++|..+.++ +.... .. +|-. .-..+..+||+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 345799999999999999999974 678888888999887664 33111 11 2221 11123478999
Q ss_pred eeccc-cccccC----CCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 546 IHASG-VFSIYQ----DRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 546 ~H~~~-~fs~~~----~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|-|.+ +|.... ..-++..+|.|+-|+|||||.|||.-
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 88643 454332 22346679999999999999999963
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.45 E-value=8.4e-08 Score=98.15 Aligned_cols=100 Identities=14% Similarity=0.020 Sum_probs=74.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCC----CCCCCCCeeEEEec
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKR----LPYPARAFDMAHCS 293 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~----Lp~pd~sFDlV~~s 293 (629)
+.+|||++||+|.++..++..+ ..++++|+|+.+++.|+++ +. ++.+.+.|... ++...++||+|++.
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4599999999999999988643 3567779999999999864 43 57888887644 34456799999984
Q ss_pred Cccccc-ccC-------HHHHHHHHHhcccCCcEEEEEeC
Q 006834 294 GCLIPW-YMY-------DGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 294 ~~L~h~-~~d-------~~~~L~el~RvLKPGG~liis~P 325 (629)
..-... ..+ ...++..+.++|||||.|++++.
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 321111 111 23578899999999999999864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=9e-08 Score=95.09 Aligned_cols=97 Identities=14% Similarity=0.241 Sum_probs=68.4
Q ss_pred EEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhh-----cccceecccc-cc--------CCCCC-c
Q 006834 482 NVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYER-----GLIGTYQDWC-EA--------FSTYP-R 541 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~er-----gli~~~~~~~-e~--------f~~yp-~ 541 (629)
+|||+|||.|.++..|++. +-....++.+|.+..++..+.+| .+-.+--+|. .. ....+ .
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 6999999999998777542 11234566777777888888776 2222222232 11 12344 8
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+||+|+|.++|.... +++..|.+|.|+|+|||+++|.
T Consensus 123 ~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEE
Confidence 999999988876543 5789999999999999999886
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=3e-07 Score=87.42 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=85.4
Q ss_pred HHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCC---
Q 006834 208 YIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRL--- 280 (629)
Q Consensus 208 ~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~L--- 280 (629)
+.+.+.+++...++. .+||++||+|.++..++++... ..++++|.+++|++.|+++ +.++.+...+...+
T Consensus 11 ll~evi~~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 11 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL 87 (192)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHhhCCCCCC--EEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH
Confidence 466667777666555 8999999999999999998644 4678889999999999986 34678887766554
Q ss_pred --CCCCCCeeEEEecCccc--ccc------cCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 --PYPARAFDMAHCSGCLI--PWY------MYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 --p~pd~sFDlV~~s~~L~--h~~------~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+..++||.|+.-..+. ++. ......|..+.++|+|||.+++..
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 24467999998644331 111 123468999999999999999874
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.41 E-value=9.7e-08 Score=90.18 Aligned_cols=100 Identities=19% Similarity=0.329 Sum_probs=72.9
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH----hhcccceeccccccCC--CCCcccceee
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY----ERGLIGTYQDWCEAFS--TYPRTYDLIH 547 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~----ergli~~~~~~~e~f~--~yp~t~Dl~H 547 (629)
.+.+| .|||+|||.|..+.+|++++. .|+.+|.++.+++.+. +.|+-. ++-.+..+. .++.+||+|.
T Consensus 28 ~~~~g---rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~I~ 100 (198)
T d2i6ga1 28 VVAPG---RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTFDGEYDFIL 100 (198)
T ss_dssp TSCSC---EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCCCCCEEEEE
T ss_pred cCCCC---cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccc-hhhhheecccccccccccEEE
Confidence 35555 399999999999999999975 4555666667777654 445421 222223333 3469999999
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
|..+|... +.-.+..+|.++-|+|||||++++.
T Consensus 101 ~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 101 STVVMMFL-EAQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp EESCGGGS-CTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EeeeeecC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 98888754 3346788999999999999999996
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.40 E-value=3.9e-07 Score=89.75 Aligned_cols=109 Identities=17% Similarity=0.043 Sum_probs=77.3
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCee
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFD 288 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFD 288 (629)
.+.+.+.+... ...++|||||||+|.++..++++.+.. ..+..|+.+ .++.+. ....+.+..+|... +.| ..|
T Consensus 69 ~~~l~~~~~~f-~~~~~vlDiGGG~G~~~~~l~~~~P~l-~~~v~Dlp~-vi~~~~-~~~ri~~~~gd~~~-~~p--~~D 141 (244)
T d1fp1d2 69 MKRMLEIYTGF-EGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQ-VIENAP-PLSGIEHVGGDMFA-SVP--QGD 141 (244)
T ss_dssp HHHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEECHH-HHTTCC-CCTTEEEEECCTTT-CCC--CEE
T ss_pred HHHHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCCCC-eEEEecchh-hhhccC-CCCCeEEecCCccc-ccc--cce
Confidence 34455544422 234589999999999999999987643 445668743 333221 12457888777643 344 459
Q ss_pred EEEecCcccccccC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 289 MAHCSGCLIPWYMY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 289 lV~~s~~L~h~~~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
++++..+||+|.++ -..+|+++++.|+|||.++|..
T Consensus 142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999844 3468999999999999999975
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.39 E-value=1.8e-07 Score=92.74 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=86.4
Q ss_pred CCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hccc-ceeccccccCCCCC-cccceeecc
Q 006834 476 HKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGLI-GTYQDWCEAFSTYP-RTYDLIHAS 549 (629)
Q Consensus 476 ~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgli-~~~~~~~e~f~~yp-~t~Dl~H~~ 549 (629)
.++. .|||+|||+|.++.++++.+. .|+.+|.++.++..+.+ .|+- -+.+. ......| .+||+|.|+
T Consensus 119 ~~g~--~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~--d~~~~~~~~~fD~V~an 191 (254)
T d2nxca1 119 RPGD--KVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEG--SLEAALPFGPFDLLVAN 191 (254)
T ss_dssp CTTC--EEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEES--CHHHHGGGCCEEEEEEE
T ss_pred CccC--EEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEec--cccccccccccchhhhc
Confidence 4554 599999999999999988874 35566777778877765 3542 12220 1112344 789999885
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-HHHHHHHHHHhcCCCeEEEeecCCCCCCCceEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-EMLVKIRSITEGMRWKSQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 621 (629)
-++. .+..++-++-|+|||||++|+++-. +....+.+.++...|+..-...++ .-..|+.+|
T Consensus 192 i~~~------~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~~----~Wv~l~~~r 254 (254)
T d2nxca1 192 LYAE------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAEG----EWVLLAYGR 254 (254)
T ss_dssp CCHH------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET----TEEEEEEEC
T ss_pred cccc------cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEEC----CEEEEEEeC
Confidence 3332 3567888999999999999998643 345677888888888765443331 234555554
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.37 E-value=4.2e-07 Score=92.84 Aligned_cols=101 Identities=10% Similarity=-0.016 Sum_probs=74.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCC----CCCCCCeeEEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRL----PYPARAFDMAH 291 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~L----p~pd~sFDlV~ 291 (629)
+++|||++||+|.++..++..|.. .++++|+|+.+++.|+++ +. ++.+...|+... .-..++||+|+
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 449999999999999998887764 356679999999999864 32 477888886432 22457899999
Q ss_pred ecCcc--------cccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 292 CSGCL--------IPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 292 ~s~~L--------~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
+..-- .....+-..++..+.++|+|||.|++++.
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 84321 01111123588889999999999999864
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.37 E-value=1.4e-06 Score=83.04 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=56.9
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecCccc
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~ 297 (629)
+.+|||+|||+|.++..++.+|.. .++++|+++.+++.|+++ +....+...|...+ ++.||+|+++..+.
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPFG 120 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCCS
T ss_pred CCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEcCccc
Confidence 449999999999999999988764 457779999999999975 45677887777654 46799999987653
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.34 E-value=7.9e-08 Score=95.17 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=71.7
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC--C--eEEEEecCCCCCCCchHHHHhhcccceecccc-ccCCCCCcccceeec
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY--P--VWVMNVVPFHSNPDTLGAIYERGLIGTYQDWC-EAFSTYPRTYDLIHA 548 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~--v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~-e~f~~yp~t~Dl~H~ 548 (629)
.+.....++|||+|||.|.++.+|+++ + +.++.+ |.... ...+.+.+.|+-....-.. ..|...|..||++.+
T Consensus 76 ~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~-~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 76 AYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAE-RARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153 (256)
T ss_dssp TSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHH-HHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEE
T ss_pred cCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHH-HHHHHHhhcCCcceeeeeeeeccccccccchhhhc
Confidence 344567889999999999999999875 2 344443 21111 2334455667633211111 345567788999998
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
..+|-.+.+. +...+|.++-|+|||||.++|.|.
T Consensus 154 ~~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccccCcH-HHHHHHHHHHhhcCCcceeEEEEe
Confidence 8877655422 345689999999999999999865
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=3.6e-06 Score=81.34 Aligned_cols=97 Identities=15% Similarity=0.058 Sum_probs=73.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C--CCeEEEEecCCC-CC-----CCCCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G--VPAMIGVISSKR-LP-----YPARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g--~~~~~~v~d~~~-Lp-----~pd~sFDlV 290 (629)
.++|||||||+|..+.++++.-.....++.+|.+++..+.|++. + ..+.+..+++.. ++ ...++||+|
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i 139 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 139 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEE
Confidence 34899999999999999998643233567779999999999864 3 347777777533 21 236789999
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+... ...+-..++..+.+.|+|||.+++.
T Consensus 140 fiD~----dk~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 140 VVDA----DKENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp EECS----CSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeC----CHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 9643 3334567889999999999999996
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.31 E-value=2.7e-07 Score=88.76 Aligned_cols=140 Identities=11% Similarity=0.131 Sum_probs=85.3
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHHH----hhcccceeccccccCCCCCcccceee
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAIY----ERGLIGTYQDWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~~----ergli~~~~~~~e~f~~yp~t~Dl~H 547 (629)
.|.+|.. |||+|||.|++..+|++. +- -|..+|.++.++..+. .++.+.....=......|+..+|.+-
T Consensus 53 ~lkpg~~--VLDlGcG~G~~~~~la~~v~~g---~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 53 KLRGDER--VLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCCSSCE--EEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCCE--EEEeCCcCCHHHHHHHHhccCC---eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEE
Confidence 4777774 999999999999998763 11 2455566656666553 44555555433344445665555433
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH----------HHHHHHHHH-HhcCCCeEEEeecCCCCCCCceE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV----------EMLVKIRSI-TEGMRWKSQIMDHESGPFNPEKI 616 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~----------~~~~~~~~~-~~~l~w~~~~~~~e~~~~~~e~~ 616 (629)
+ +|....+..+...+|.|+.|+|||||++++.+.. .+...+.+. ..++... ...+.+ |+.++-+
T Consensus 128 ~--v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~-E~i~L~--P~~~~H~ 202 (209)
T d1nt2a_ 128 L--IYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIV-KHGSLM--PYHRDHI 202 (209)
T ss_dssp E--EEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEE-EEEECT--TTCTTEE
T ss_pred E--EEecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEE-EEEccC--CCccCcE
Confidence 2 3443334456678999999999999999997432 233333333 2333221 233443 6677888
Q ss_pred EEEEecc
Q 006834 617 LFAAKTY 623 (629)
Q Consensus 617 l~~~K~~ 623 (629)
||.-+.|
T Consensus 203 ~v~~~r~ 209 (209)
T d1nt2a_ 203 FIHAYRF 209 (209)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.30 E-value=2.2e-07 Score=89.18 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=75.4
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHH----HHhhcc--cceec-cccccCCCCC-cccceeeccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGA----IYERGL--IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~----~~ergl--i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.|||+|||.|.+...|++. |= .|++.+|.+.+.+.. +.++|| +-+++ |-..-...+| .++|.++.....
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~--~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred eEEEEEecCcHHHHHHHHhCCC--CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 5999999999999999765 22 256666766566554 445576 33333 2111112355 899988764333
Q ss_pred cccCC----CcC-HHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCCC
Q 006834 553 SIYQD----RCD-ITNILLEMDRILRPEGTVIF-RDTVEMLVKIRSITEGMRW 599 (629)
Q Consensus 553 s~~~~----~c~-~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~l~w 599 (629)
-..+. +.. -+.+|.++.|+|||||.++| ||.....+.+.+.+.....
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~ 162 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL 162 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCC
Confidence 22221 111 26799999999999999987 6888777777777654443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=1.9e-06 Score=80.85 Aligned_cols=128 Identities=10% Similarity=0.041 Sum_probs=85.5
Q ss_pred CCeeeecCCCCCCCCchHHHHHHHHhhcCc-cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc-
Q 006834 189 GHRFRFPGGGTTFPNGADAYIDNINELIPL-TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~-~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er- 266 (629)
|..+..|.+.. .....+...+.+..++.. ..+ .+|||++||+|.++...+.+|.. .++.+|.+..+++.++++
T Consensus 12 g~~l~~~~~~~-~RPt~~~vre~lfn~l~~~~~~--~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~ 86 (183)
T d2fpoa1 12 GRKLPVPDSPG-LRPTTDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNL 86 (183)
T ss_dssp TCEEECCCC-------CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHH
T ss_pred CCEecCCCCCC-cCcCcHHHHHHHHhhhhcccch--hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHH
Confidence 44556665432 223345555666666543 233 38999999999999999999986 446679999999998864
Q ss_pred ---C-CCeEEEEecCCC-CCCCCCCeeEEEecCccccccc-CHHHHHHHHHh--cccCCcEEEEEe
Q 006834 267 ---G-VPAMIGVISSKR-LPYPARAFDMAHCSGCLIPWYM-YDGLYLLEVDR--VLRPGGYWILSG 324 (629)
Q Consensus 267 ---g-~~~~~~v~d~~~-Lp~pd~sFDlV~~s~~L~h~~~-d~~~~L~el~R--vLKPGG~liis~ 324 (629)
+ .+..+...|+.. +.....+||+|++..-+ .. .....+..+.+ +|+++|.+++..
T Consensus 87 ~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY---~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 87 ATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF---RRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS---STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhccccceeeeeecccccccccccccCEEEEcCcc---ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 2 246666666543 33456789999997743 22 24556666654 799999999974
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.28 E-value=6.5e-07 Score=86.34 Aligned_cols=97 Identities=16% Similarity=0.164 Sum_probs=70.3
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCCC-C-----CCCCCeeEE
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKRL-P-----YPARAFDMA 290 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~L-p-----~pd~sFDlV 290 (629)
+++|||+|||+|..+..|++.-.....++.+|.++.+++.|+++ +. .+.+..++.... + +..++||+|
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence 34899999999999999997533333566779999999999753 43 478888776432 2 445789999
Q ss_pred EecCcccccccC--HHHHHHHHHhcccCCcEEEEE
Q 006834 291 HCSGCLIPWYMY--DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 291 ~~s~~L~h~~~d--~~~~L~el~RvLKPGG~liis 323 (629)
+.-. +... ....+.+..++|||||++++.
T Consensus 137 fiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 137 FLDH----WKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EECS----CGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eecc----cccccccHHHHHHHhCccCCCcEEEEe
Confidence 9753 2222 234678888999999987664
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3.3e-07 Score=90.77 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=78.9
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh--ccccee-----------------------------
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER--GLIGTY----------------------------- 529 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er--gli~~~----------------------------- 529 (629)
+.|||+|||.|.+...++.+.+ .+|+.+|-++++++.+..+ .-.+.+
T Consensus 56 ~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 56 RTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp SEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred cEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 4699999999988776666643 5788889888899887542 111111
Q ss_pred ------ccccc--cC---CCCCcccceeecccccccc-CCCcCHHHHHHHHhhcccCCcEEEEEeCHH------------
Q 006834 530 ------QDWCE--AF---STYPRTYDLIHASGVFSIY-QDRCDITNILLEMDRILRPEGTVIFRDTVE------------ 585 (629)
Q Consensus 530 ------~~~~e--~f---~~yp~t~Dl~H~~~~fs~~-~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~------------ 585 (629)
.|... .+ ...+..||+|-+..+++.- .++.++..+|.++.|+|||||++|+.+...
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~ 213 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLT 213 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccc
Confidence 11111 11 1223689998775555432 345567889999999999999999974311
Q ss_pred ----HHHHHHHHHhcCCCeEE
Q 006834 586 ----MLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 586 ----~~~~~~~~~~~l~w~~~ 602 (629)
..+.|++++..---+++
T Consensus 214 ~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 214 VVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEE
Confidence 24677777766665543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=5.4e-07 Score=87.01 Aligned_cols=120 Identities=10% Similarity=-0.014 Sum_probs=82.4
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cc-------------------eeccccccC----C
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IG-------------------TYQDWCEAF----S 537 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~-------------------~~~~~~e~f----~ 537 (629)
.|||+|||.|-.+.+|++++. +|+.+|.++..+..+.++-- .+ ...-.|..+ .
T Consensus 48 rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 124 (229)
T d2bzga1 48 RVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPR 124 (229)
T ss_dssp EEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGG
T ss_pred EEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccc
Confidence 499999999999999999987 56777888777777665421 10 001112222 2
Q ss_pred CCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH------------HHHHHHHHHHhcCCCeEEEee
Q 006834 538 TYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV------------EMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 538 ~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~------------~~~~~~~~~~~~l~w~~~~~~ 605 (629)
....+||+|...++|-... .-+.+.++.+|-|+|||||++++.... -....|++++.. .|++...+
T Consensus 125 ~~~~~fd~i~~~~~l~~~~-~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 125 TNIGKFDMIWDRGALVAIN-PGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp SCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred cccCceeEEEEEEEEEecc-chhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEEEE
Confidence 3348999999877776543 245688999999999999998775211 024567888776 47766554
Q ss_pred c
Q 006834 606 H 606 (629)
Q Consensus 606 ~ 606 (629)
+
T Consensus 203 ~ 203 (229)
T d2bzga1 203 K 203 (229)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.27 E-value=2.1e-06 Score=80.51 Aligned_cols=131 Identities=13% Similarity=0.019 Sum_probs=90.0
Q ss_pred CCeeeecCCCCCCCCchHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc--
Q 006834 189 GHRFRFPGGGTTFPNGADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER-- 266 (629)
Q Consensus 189 g~~~~Fpgggt~f~~ga~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er-- 266 (629)
|..+.+|.+.. .....+...+.+-++|... -.+.+|||++||+|.++...+.+|.. .++.+|.+..+++.++++
T Consensus 10 g~~l~~~~~~~-~RPt~~~vrealFn~l~~~-~~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~ 85 (182)
T d2fhpa1 10 GRRLKALDGDN-TRPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIA 85 (182)
T ss_dssp TCBCCCCCCCS-SCCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHH
T ss_pred CCEecCCCCCC-cCcCcHHHHHHHHHHHHHh-cCCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhh
Confidence 34455554332 2344556667777776532 12349999999999999999999976 456779999999999865
Q ss_pred --CC--CeEEEEecCCCC----CCCCCCeeEEEecCcccccccCHHHHHHHHH--hcccCCcEEEEEeC
Q 006834 267 --GV--PAMIGVISSKRL----PYPARAFDMAHCSGCLIPWYMYDGLYLLEVD--RVLRPGGYWILSGP 325 (629)
Q Consensus 267 --g~--~~~~~v~d~~~L----p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~--RvLKPGG~liis~P 325 (629)
+. ++.+...|+.+. .-....||+|++-.-+ .. .+....+..+. .+|+|+|++++..+
T Consensus 86 ~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY-~~-~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 86 ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY-AK-QEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG-GG-CCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhhcccccccccccchhhhhhhcccCCCcceEEechhh-hh-hHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 22 477777776442 2245689999987643 11 13456777765 47999999998753
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=6.7e-07 Score=90.49 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=74.2
Q ss_pred HHHHHHHHhhc---ccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCc---hHHHHhhcc---cceecccc
Q 006834 463 DRMTYYKKIDG---LFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDT---LGAIYERGL---IGTYQDWC 533 (629)
Q Consensus 463 ~~v~~y~~~~~---~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~---l~~~~ergl---i~~~~~~~ 533 (629)
.|...|.+.+. .+..++ +|||+|||+|.++..+++.+. -.|..+|.++.+ ...+.+.|+ |-+.+.-.
T Consensus 18 ~r~~~y~~ai~~~~~~~~~~--~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~ 93 (311)
T d2fyta1 18 IRTESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI 93 (311)
T ss_dssp HHHHHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred HHHHHHHHHHHhccccCCcC--EEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH
Confidence 33445655432 233444 599999999999988887653 112233333233 355666676 34444333
Q ss_pred ccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 534 EAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 534 e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+.+..-+..||+|-+..+++.......++.++..++|+|||||.+|-
T Consensus 94 ~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 94 EEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred HHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 33333348999999877777666666778899999999999999985
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.24 E-value=2.6e-06 Score=86.54 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=76.2
Q ss_pred CCeEEEeCCCCchHHHHHHHc----CCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCCCCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKR----DILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLPYPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~----g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp~pd~sFDlV~~s~ 294 (629)
+.+|||.|||+|.++..+.++ ......++|+|+++.+++.|+.+ +....+...+.... .+..+||+|+++.
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~NP 196 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISDL 196 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEEC
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccccCC
Confidence 348999999999999887643 34455788999999999998743 55566666554433 3457899999987
Q ss_pred cccccccC-----------------HHHHHHHHHhcccCCcEEEEEeCCC
Q 006834 295 CLIPWYMY-----------------DGLYLLEVDRVLRPGGYWILSGPPI 327 (629)
Q Consensus 295 ~L~h~~~d-----------------~~~~L~el~RvLKPGG~liis~P~~ 327 (629)
.+...... ...++..+.+.|+|||++++..|..
T Consensus 197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 66322111 1136889999999999999988754
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.23 E-value=1.2e-06 Score=88.97 Aligned_cols=112 Identities=10% Similarity=0.057 Sum_probs=76.1
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEecCCCC-
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVISSKRL- 280 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d~~~L- 280 (629)
...+.+.+... ..+.+|||++||+|.++..++..|.. ++++|.|+.+++.|+++ +. ++.|.+.|+.+.
T Consensus 120 r~~~~~~~~~~-~~~~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l 195 (309)
T d2igta1 120 WEWLKNAVETA-DRPLKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 195 (309)
T ss_dssp HHHHHHHHHHS-SSCCEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred HHHHHHHHhhc-cCCCeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhH
Confidence 44444444321 22449999999999999999998874 45669999999999874 32 478888886543
Q ss_pred ---CCCCCCeeEEEecCcc-------ccc--ccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 281 ---PYPARAFDMAHCSGCL-------IPW--YMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 281 ---p~pd~sFDlV~~s~~L-------~h~--~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....+.||+|++..-- ..+ ..+...++..+.++|+|||.+++.+
T Consensus 196 ~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 196 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 2235789999984221 011 1112346677889999999766654
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=9.3e-06 Score=80.85 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSK 278 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~ 278 (629)
++.+++.+.+.+.... ..+|||+|||+|..+..+++.. ...++++|+|+.+++.|+++ +. .+.+...+..
T Consensus 95 TE~lv~~~~~~~~~~~--~~~vld~g~GsG~i~~~la~~~--~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~ 170 (271)
T d1nv8a_ 95 TEELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL 170 (271)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHS--SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred hhhhhhhhhhhhcccc--ccEEEEeeeeeehhhhhhhhcc--cceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccc
Confidence 4556666666655443 3389999999999998888653 23567889999999999975 33 3455555543
Q ss_pred C-CCCCCCCeeEEEecCccccccc--------CHH----------HHH-HHHHhcccCCcEEEEEe
Q 006834 279 R-LPYPARAFDMAHCSGCLIPWYM--------YDG----------LYL-LEVDRVLRPGGYWILSG 324 (629)
Q Consensus 279 ~-Lp~pd~sFDlV~~s~~L~h~~~--------d~~----------~~L-~el~RvLKPGG~liis~ 324 (629)
. ++...++||+|+|+.-.+.-.+ +|. .++ +-+.+.|+|||++++..
T Consensus 171 ~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 171 EPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp GGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred cccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 2223478999999765432110 111 122 22567899999999985
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.20 E-value=1.1e-06 Score=89.21 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=71.9
Q ss_pred HHHHHHhhc---ccCCCCeeEEEeecccchhHHhhhhCCC---eEEEEecCCCCCCCchHHHHhhccc---ceecccccc
Q 006834 465 MTYYKKIDG---LFHKGRYRNVMDMNAYLGGFAAAMSKYP---VWVMNVVPFHSNPDTLGAIYERGLI---GTYQDWCEA 535 (629)
Q Consensus 465 v~~y~~~~~---~~~~~~~R~vlD~~~g~Ggfaa~l~~~~---v~~mnv~~~~~~~~~l~~~~ergli---~~~~~~~e~ 535 (629)
...|.+.+. .+..++ +|||+|||+|.++..+++.+ |+.+-..+. .......+...|+. .+.+.--+.
T Consensus 18 ~~~y~~ai~~~~~~~~~~--~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~--~~~a~~~~~~n~~~~~v~~~~~~~~~ 93 (316)
T d1oria_ 18 TLTYRNSMFHNRHLFKDK--VVLDVGSGTGILCMFAAKAGARKVIGIECSSI--SDYAVKIVKANKLDHVVTIIKGKVEE 93 (316)
T ss_dssp HHHHHHHHHTCHHHHTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECSTT--HHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHHhccccCCcC--EEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH--HhhhhhHHHHhCCccccceEeccHHH
Confidence 344655432 133454 59999999999988777764 433332221 11233445556773 343322233
Q ss_pred CCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 536 FSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 536 f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
+..-+..||+|-+.-+.........++.++.+++|+|+|||.+|-
T Consensus 94 ~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 94 VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 333338999998876766666777899999999999999999874
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.19 E-value=9.6e-07 Score=84.55 Aligned_cols=117 Identities=19% Similarity=0.190 Sum_probs=78.8
Q ss_pred eEEEeecccchhHHhhhhCC--CeEEEEecCCCCCCCchHHH----Hhhcc--cceec-cccccCCCCC-cccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY--PVWVMNVVPFHSNPDTLGAI----YERGL--IGTYQ-DWCEAFSTYP-RTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~--~v~~mnv~~~~~~~~~l~~~----~ergl--i~~~~-~~~e~f~~yp-~t~Dl~H~~~ 550 (629)
..|||+|||.|.+..+|++. +. |++.+|-..+.+..+ .+.|+ |-+++ |..+-...+| .++|.||+
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i-- 107 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL-- 107 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE--
T ss_pred CeEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc--
Confidence 36999999999999999764 33 566666655555544 45666 45555 3222223356 89999887
Q ss_pred cccc-------cCCCcCHHHHHHHHhhcccCCcEEEE-EeCHHHHHHHHHHHhcCCCeEE
Q 006834 551 VFSI-------YQDRCDITNILLEMDRILRPEGTVIF-RDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 551 ~fs~-------~~~~c~~~~~l~e~dRiLrPgG~~i~-~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
.|.. .+.|=--+.+|.++.|+|+|||.++| ||..+..+.+........|...
T Consensus 108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 3331 11222236799999999999999988 7888877777666666666544
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.19 E-value=8.5e-07 Score=86.45 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=81.0
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHh----hcccc-eeccccccCCCCC-ccc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYE----RGLIG-TYQDWCEAFSTYP-RTY 543 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~e----rgli~-~~~~~~e~f~~yp-~t~ 543 (629)
++.+|.. |||+|||+|.++.+|++. .|+.+.+.| .++..+.+ |+.+- +..+... ...|+ .++
T Consensus 71 ~ikpG~~--VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~-----~~i~~a~~~a~~~~ni~~i~~d~~~-~~~~~~~~~ 142 (230)
T d1g8sa_ 71 PIKRDSK--ILYLGASAGTTPSHVADIADKGIVYAIEYAP-----RIMRELLDACAERENIIPILGDANK-PQEYANIVE 142 (230)
T ss_dssp CCCTTCE--EEEESCCSSHHHHHHHHHTTTSEEEEEESCH-----HHHHHHHHHTTTCTTEEEEECCTTC-GGGGTTTCC
T ss_pred CCCCCCE--EEEeCEEcCHHHHHHHHhCCCCEEEEEeCcH-----HHHHHHHHHHhhhcccceEEEeecc-Ccccccccc
Confidence 3677764 999999999999999864 245554444 45555554 45433 3334333 33344 566
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC----------HHHHHHHHHHHhcCCCeEE-EeecCCCCCC
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT----------VEMLVKIRSITEGMRWKSQ-IMDHESGPFN 612 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~----------~~~~~~~~~~~~~l~w~~~-~~~~e~~~~~ 612 (629)
|++-+ |.......+.+.++.|+.|+|||||+++|.+. ......+.+.++.-..+.. ..|. .|..
T Consensus 143 ~v~~i---~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL--~py~ 217 (230)
T d1g8sa_ 143 KVDVI---YEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI--EPFE 217 (230)
T ss_dssp CEEEE---EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC--TTTS
T ss_pred eeEEe---eccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC--CCCc
Confidence 65333 23333445678899999999999999999632 2334555555555445442 2333 3566
Q ss_pred CceEEEE
Q 006834 613 PEKILFA 619 (629)
Q Consensus 613 ~e~~l~~ 619 (629)
++-+||.
T Consensus 218 ~~H~~vv 224 (230)
T d1g8sa_ 218 KDHVMFV 224 (230)
T ss_dssp TTEEEEE
T ss_pred CCeEEEE
Confidence 6665554
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=1.2e-06 Score=89.43 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=65.7
Q ss_pred EEEeecccchhHHhhhhCCC---eEEEEecCCCCCCCchHHHHhhccc---ceeccccccCCCCCcccceeecccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYP---VWVMNVVPFHSNPDTLGAIYERGLI---GTYQDWCEAFSTYPRTYDLIHASGVFSIY 555 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~---v~~mnv~~~~~~~~~l~~~~ergli---~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~ 555 (629)
+|||+|||+|..+..+++.+ |.+.-..+ .-....+.+.+.|+. -+++.-.+.+..-+..||+|-+.-++...
T Consensus 41 ~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~--~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~ 118 (328)
T d1g6q1_ 41 IVLDVGCGTGILSMFAAKHGAKHVIGVDMSS--IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL 118 (328)
T ss_dssp EEEEETCTTSHHHHHHHHTCCSEEEEEESST--HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTB
T ss_pred EEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH--HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecceee
Confidence 59999999999998888765 33332221 111234455667773 34442223332223899999987777766
Q ss_pred CCCcCHHHHHHHHhhcccCCcEEE
Q 006834 556 QDRCDITNILLEMDRILRPEGTVI 579 (629)
Q Consensus 556 ~~~c~~~~~l~e~dRiLrPgG~~i 579 (629)
...-.++.++.+++|+|+|||.+|
T Consensus 119 ~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 119 LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccchhHHHHHHHHHhccCCCeEEE
Confidence 677788999999999999999986
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.13 E-value=1.9e-06 Score=83.87 Aligned_cols=134 Identities=15% Similarity=0.217 Sum_probs=79.0
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC----C-eEEEEecCCCCCCCchHHHH----hhcccc-eecccc--ccCCCCCc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY----P-VWVMNVVPFHSNPDTLGAIY----ERGLIG-TYQDWC--EAFSTYPR 541 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~----ergli~-~~~~~~--e~f~~yp~ 541 (629)
.|.+|.. |||+|||.|+++.+|++. + |+.+-+.| .++..+. .++.+- +..|-. +.+.....
T Consensus 70 ~i~pG~~--VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~-----~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 70 PIKPGKS--VLYLGIASGTTASHVSDIVGWEGKIFGIEFSP-----RVLRELVPIVEERRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCTTCE--EEEETTTSTTHHHHHHHHHCTTSEEEEEESCH-----HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCC
T ss_pred ccCCCCE--EEEeccCCCHHHHHHHHHhCCCCEEEEEeCcH-----HHHHHHHHHHHhcCCceEEEEECCCccccccccc
Confidence 4677775 999999999999999864 2 55544443 4544443 445433 222221 12222235
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe----------CHHHHHHHHHHHhcCCCeEE-EeecCCCC
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD----------TVEMLVKIRSITEGMRWKSQ-IMDHESGP 610 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d----------~~~~~~~~~~~~~~l~w~~~-~~~~e~~~ 610 (629)
.+|.++++- ...-+.+.++.++.|+|||||.++|.. +.++...++++.+. .++.. ..+.+ |
T Consensus 143 ~vD~i~~d~-----~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~--p 214 (227)
T d1g8aa_ 143 KVDVIFEDV-----AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLE--P 214 (227)
T ss_dssp CEEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT--T
T ss_pred ceEEEEEEc-----cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCC--C
Confidence 677776521 112234568999999999999999962 23445566666543 45442 33433 3
Q ss_pred CCCc-eEEEEEec
Q 006834 611 FNPE-KILFAAKT 622 (629)
Q Consensus 611 ~~~e-~~l~~~K~ 622 (629)
+..+ -+.|++|+
T Consensus 215 ~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 215 YEKDHALFVVRKT 227 (227)
T ss_dssp TSSSEEEEEEECC
T ss_pred CCCceEEEEEEeC
Confidence 3333 56677774
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.11 E-value=1.8e-06 Score=81.79 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=79.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPAR 285 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~ 285 (629)
...++.+.+++....+. +|||.|||+|.|+..+.++......+.++|+++..+..+ ....+...+..... ...
T Consensus 5 ~~i~~~m~~l~~~~~~~--~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----~~~~~~~~~~~~~~-~~~ 77 (223)
T d2ih2a1 5 PEVVDFMVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWE-PGE 77 (223)
T ss_dssp HHHHHHHHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSS
T ss_pred HHHHHHHHHhcCCCCcC--EEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----ccceeeeeehhccc-ccc
Confidence 45577788887765554 999999999999988887644445678889987655433 23455555544433 457
Q ss_pred CeeEEEecCccccccc---------------------------C-HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 286 AFDMAHCSGCLIPWYM---------------------------Y-DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~---------------------------d-~~~~L~el~RvLKPGG~liis~P~ 326 (629)
.||+|+++..+..... + ...++....+.|+|||++++..|.
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 8999999766532110 0 124678889999999999999874
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.5e-05 Score=78.19 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=61.4
Q ss_pred HHHHHHHHhhcCc---cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEec
Q 006834 206 DAYIDNINELIPL---TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVIS 276 (629)
Q Consensus 206 ~~~i~~I~~lL~~---~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d 276 (629)
..|++.+.+++.. ......+|||+|||+|..+..|+.+.. ...++++|+++.+++.|+++ +. .+.+...+
T Consensus 42 ~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~ 120 (250)
T d2h00a1 42 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP 120 (250)
T ss_dssp HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeec
Confidence 3345555555432 223345899999999999999988743 23667889999999999975 22 34554443
Q ss_pred CCCC------CCCCCCeeEEEecCcccc
Q 006834 277 SKRL------PYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 277 ~~~L------p~pd~sFDlV~~s~~L~h 298 (629)
.... ...+++||+|+|+.-++.
T Consensus 121 ~~~~~~~~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 121 QKTLLMDALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp TTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred cHHhhhhhhhhcccCceeEEEecCcccc
Confidence 3221 123568999999887754
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.10 E-value=2.6e-06 Score=83.66 Aligned_cols=96 Identities=14% Similarity=-0.003 Sum_probs=72.6
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
..+|||||||+|.++..++++.+.. .++..|.. +.++.+.. ..++.+..+|... +.+ .+|++++.++||+|.++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dlp-~vi~~~~~-~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~ 154 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKL-KCIVFDRP-QVVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDK 154 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTC-EEEEEECH-HHHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCC-eEEEecCH-HHHHhCcc-cCceEEEecCccc-CCC--CCcEEEEEeecccCChH
Confidence 3589999999999999999987643 55667984 34443322 2468888888754 333 57999999999999844
Q ss_pred H-HHHHHHHHhcccCC---cEEEEEe
Q 006834 303 D-GLYLLEVDRVLRPG---GYWILSG 324 (629)
Q Consensus 303 ~-~~~L~el~RvLKPG---G~liis~ 324 (629)
. ..+|+.+++.|+|| |.++|..
T Consensus 155 ~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 155 DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 3 46999999999998 6677764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.10 E-value=2.3e-06 Score=80.07 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=79.5
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCCCCCcccceee
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFSTYPRTYDLIH 547 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~~yp~t~Dl~H 547 (629)
+.++.. |||+|||+|.++.+|+...- .|+.+|.+++++..+.++ |+ |-+++.-......=...||++=
T Consensus 31 ~~~g~~--VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~ 105 (186)
T d1l3ia_ 31 PGKNDV--AVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAV 105 (186)
T ss_dssp CCTTCE--EEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEE
T ss_pred CCCCCE--EEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEE
Confidence 566664 99999999999999987742 344556666788777664 54 3344422211211227899876
Q ss_pred ccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCeEE
Q 006834 548 ASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 548 ~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~ 602 (629)
+++ ..-.+++++.++.+.|||||++++... .+....+.+.+....|+..
T Consensus 106 ~~~------~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 106 VGG------SGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp ESC------CTTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred EeC------ccccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 633 223578999999999999999999764 4556667777777666544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.04 E-value=5.4e-06 Score=82.78 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=80.9
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------------CCCe
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------------GVPA 270 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------------g~~~ 270 (629)
..|.+.+..........+++||-+|+|.|..+..+++.... .++.+|+++..++.|++- ...+
T Consensus 56 ~~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv 133 (276)
T d1mjfa_ 56 RSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKA 133 (276)
T ss_dssp HHHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSE
T ss_pred hHHHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCc--eEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCc
Confidence 34555554432222334669999999999999999887653 567789999999999852 2457
Q ss_pred EEEEecCCCCCCCCCCeeEEEecCcccccccC----HHHHHHHHHhcccCCcEEEEEe
Q 006834 271 MIGVISSKRLPYPARAFDMAHCSGCLIPWYMY----DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 271 ~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d----~~~~L~el~RvLKPGG~liis~ 324 (629)
.+...|....--.+++||+|++-..- +.... ...+++.+.+.|+|||.+++-.
T Consensus 134 ~i~~~Da~~~l~~~~~yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 134 KLTIGDGFEFIKNNRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEESCHHHHHHHCCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEChHHHHHhccCCCCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 78887765432235789999973321 22211 2579999999999999998854
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.92 E-value=9.3e-06 Score=79.31 Aligned_cols=96 Identities=14% Similarity=-0.016 Sum_probs=70.4
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
.++|||||||+|.++..++++.+.. .++..|+.+. ++.+. ....+.+...|... +.|. .|+++...++++|..+
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l-~~~v~Dlp~v-i~~~~-~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~ 155 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHV-IEDAP-SYPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDE 155 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTS-EEEEEECTTT-TTTCC-CCTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCC-eEEEcccHHh-hhhcc-cCCceEEecccccc-cCCC--cceEEEEEEeecCCHH
Confidence 4589999999999999999987643 4556688543 32221 22457777777643 4443 4677788999888743
Q ss_pred -HHHHHHHHHhcccCCcEEEEEe
Q 006834 303 -DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 303 -~~~~L~el~RvLKPGG~liis~ 324 (629)
...+|+++++.|+|||.+++..
T Consensus 156 ~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 156 HCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp HHHHHHHHHHHHCCSSSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEE
Confidence 4569999999999999998865
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.89 E-value=2.8e-05 Score=75.28 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=77.1
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC--CeEEEEecCCC-
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV--PAMIGVISSKR- 279 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~--~~~~~v~d~~~- 279 (629)
.++..+.+... +++|||+|+++|.-+.+|++.-.....++.+|.+++..+.|++. |. .+.+..+++..
T Consensus 49 ~~L~~L~~~~~-----~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~ 123 (227)
T d1susa1 49 QFLSMLLKLIN-----AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 123 (227)
T ss_dssp HHHHHHHHHHT-----CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred HHHHHHHHhcC-----CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH
Confidence 34444444432 34899999999999999997533333566779999999999864 32 47777776532
Q ss_pred CC------CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 280 LP------YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 280 Lp------~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
++ ...++||+|+.- +...+-..++..+.+.|+|||.+++.
T Consensus 124 L~~l~~~~~~~~~fD~iFiD----a~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVD----ADKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEEC----SCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHhccccCCceeEEEec----cchhhhHHHHHHHHhhcCCCcEEEEc
Confidence 22 125689999963 34444567899999999999999997
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=1.3e-05 Score=81.38 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=80.6
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----------CCCeEEEEec
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----------GVPAMIGVIS 276 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----------g~~~~~~v~d 276 (629)
.|.+.+..........+++||.||.|.|..+..+++... ...++.+|++++.++.|++. ...+.+...|
T Consensus 62 ~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~D 140 (312)
T d1uira_ 62 IYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140 (312)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred HHHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEch
Confidence 344555433222223466999999999999999988743 33678889999999999864 2457888888
Q ss_pred CCCC-CCCCCCeeEEEecCccccccc-------CHHHHHHHHHhcccCCcEEEEEe
Q 006834 277 SKRL-PYPARAFDMAHCSGCLIPWYM-------YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 277 ~~~L-p~pd~sFDlV~~s~~L~h~~~-------d~~~~L~el~RvLKPGG~liis~ 324 (629)
.... .-.+++||+|+.-.. .++.. ....+++.+.+.|+|||.+++-.
T Consensus 141 a~~~l~~~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 141 ARAYLERTEERYDVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp HHHHHHHCCCCEEEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHhhhcCCcccEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 6543 223578999996331 11111 12579999999999999998854
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.85 E-value=6.8e-05 Score=69.83 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhcCc-cCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC---CeEEEEec
Q 006834 205 ADAYIDNINELIPL-TGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV---PAMIGVIS 276 (629)
Q Consensus 205 a~~~i~~I~~lL~~-~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~---~~~~~v~d 276 (629)
.+...+.+-+.+.. ..+. +|||+.||+|.++.+.+.+|.. .++.+|.+...++..+++ +. ...+...+
T Consensus 27 ~~~vrealFn~l~~~~~~~--~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d 102 (183)
T d2ifta1 27 GDRVKETLFNWLMPYIHQS--ECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS 102 (183)
T ss_dssp -CHHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred cHHHHHHHHHHhhhhcccc--eEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence 34445555555542 2333 8999999999999999999986 446689999999888764 22 24444443
Q ss_pred C---CCCCCCCCCeeEEEecCcccccccC-HHHHHHHHH--hcccCCcEEEEEeC
Q 006834 277 S---KRLPYPARAFDMAHCSGCLIPWYMY-DGLYLLEVD--RVLRPGGYWILSGP 325 (629)
Q Consensus 277 ~---~~Lp~pd~sFDlV~~s~~L~h~~~d-~~~~L~el~--RvLKPGG~liis~P 325 (629)
. .........||+|++-.-+ ..+ ....+..+. .+|+++|++++..+
T Consensus 103 ~~~~l~~~~~~~~fDlIFlDPPY---~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 103 SLDFLKQPQNQPHFDVVFLDPPF---HFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HHHHTTSCCSSCCEEEEEECCCS---SSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccccccCCcccEEEechhH---hhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 2 2223345679999987744 323 345666664 47999999999754
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.84 E-value=3.1e-05 Score=75.41 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
+..++.|.+.+....++ +|||||||+|.++..|++.+.. ++++|+++.+++.++++. .++.+..+|...+++
T Consensus 7 ~~i~~~iv~~~~~~~~d--~VlEIGpG~G~LT~~Ll~~~~~---v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCNF---VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSSE---EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCchHHHHHHHhCcCc---eEEEeeccchHHHHHHHhhcccchhhhhhhhhhccc
Confidence 45677888887766655 9999999999999999998764 456699999999998864 468999999988887
Q ss_pred CCCCeeEEEecCcc
Q 006834 283 PARAFDMAHCSGCL 296 (629)
Q Consensus 283 pd~sFDlV~~s~~L 296 (629)
+......|+++.-+
T Consensus 82 ~~~~~~~vv~NLPY 95 (235)
T d1qama_ 82 PKNQSYKIFGNIPY 95 (235)
T ss_dssp CSSCCCEEEEECCG
T ss_pred cccccceeeeeehh
Confidence 76555566665543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=2.6e-06 Score=81.74 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=60.1
Q ss_pred HHHHhhcccCCCCeeEEEeecccchhHHhhhhCC---C--eEEEEecCCCCCCCchHHHHhh----cccceeccccccCC
Q 006834 467 YYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY---P--VWVMNVVPFHSNPDTLGAIYER----GLIGTYQDWCEAFS 537 (629)
Q Consensus 467 ~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~---~--v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~~e~f~ 537 (629)
.....++ +++|. +|||+|||+|.+++.|++. . |+..-+ .+..++.+.++ |+-.+.........
T Consensus 66 ~~l~~l~-l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~-----~~~~~~~a~~~~~~~~~~n~~~~~~d~~~ 137 (213)
T d1dl5a1 66 LFMEWVG-LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY-----SRKICEIAKRNVERLGIENVIFVCGDGYY 137 (213)
T ss_dssp HHHHHTT-CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEES-----CHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred HHHHhhh-ccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeec-----chhhHHHhhhhHhhhcccccccccCchHH
Confidence 3334443 67776 5999999999999888643 2 444333 33455554443 33222222223444
Q ss_pred CCC--cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 538 TYP--RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 538 ~yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.+| .+||.|++.+.+.. +..++-|.|||||.+|+-
T Consensus 138 ~~~~~~~fD~I~~~~~~~~---------~p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 138 GVPEFSPYDVIFVTVGVDE---------VPETWFTQLKEGGRVIVP 174 (213)
T ss_dssp CCGGGCCEEEEEECSBBSC---------CCHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhhhhhccHHH---------hHHHHHHhcCCCcEEEEE
Confidence 555 78999998665542 223556789999999984
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.72 E-value=2.1e-05 Score=77.30 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=71.1
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRT 542 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t 542 (629)
.|.+|.. |||+|||.|+++.+|++. +-- |..+|.++.+++.+.++ +. +...+ |.++.+. ..+
T Consensus 82 ~i~pG~r--VLEiG~GsG~lt~~la~~v~~~g~---V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--~~~ 154 (250)
T d1yb2a1 82 GLRPGMD--ILEVGVGSGNMSSYILYALNGKGT---LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQM 154 (250)
T ss_dssp CCCTTCE--EEEECCTTSHHHHHHHHHHTTSSE---EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCC
T ss_pred CCCCcCE--EEEeeeeCcHHHHHHHHHhCCCcE---EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--cce
Confidence 4778864 999999999999888753 211 22234555677777764 33 33444 5554432 378
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCC
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRW 599 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w 599 (629)
||.|..+ --+...+|-++.|+|||||.+++.-+ .+.+.++-+.++.-.|
T Consensus 155 fD~V~ld--------~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf 204 (250)
T d1yb2a1 155 YDAVIAD--------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGM 204 (250)
T ss_dssp EEEEEEC--------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred eeeeeec--------CCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCC
Confidence 9988762 12334689999999999999998755 3334444444444444
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.70 E-value=0.00015 Score=72.65 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=81.9
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISS 277 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~ 277 (629)
.|.+.+..........+++||=||-|.|..+..+++... +..++.+|++++.++.|++- ...+.+...|.
T Consensus 65 ~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da 143 (290)
T d1xj5a_ 65 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG 143 (290)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred HHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH
Confidence 344444443322233467999999999999999998743 22567789999999999863 35678888775
Q ss_pred CCC--CCCCCCeeEEEecCccccccc----CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 278 KRL--PYPARAFDMAHCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 278 ~~L--p~pd~sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~P 325 (629)
... ...+++||+|+.-.. .+... ....+++.+++.|+|||.++.-..
T Consensus 144 ~~~l~~~~~~~yDvIi~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 144 VAFLKNAAEGSYDAVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp HHHHHTSCTTCEEEEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHhhccccCccEEEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 433 234568999996322 12111 135799999999999999999754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.65 E-value=9.3e-06 Score=79.72 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=70.4
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCCC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPYP 283 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~p 283 (629)
..++.|.+.+...+++ +|||||||+|.++..|++.+.. ++++|+++.+++.++++. .++.+..+|...++++
T Consensus 16 ~ii~kIv~~~~~~~~d--~VLEIGpG~G~LT~~L~~~~~~---v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~ 90 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQ---VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp TTHHHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSE---EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCccHHHHHHHhhcCc---eeEeeecccchhhhhhhhhhccchhhhhhhhhccccc
Confidence 3467788887766555 8999999999999999998764 456699999998887663 4688888899988888
Q ss_pred CCCeeEEEecCcccccc
Q 006834 284 ARAFDMAHCSGCLIPWY 300 (629)
Q Consensus 284 d~sFDlV~~s~~L~h~~ 300 (629)
...++.|+++..+ |+.
T Consensus 91 ~~~~~~vv~NLPY-~Is 106 (245)
T d1yuba_ 91 NKQRYKIVGNIPY-HLS 106 (245)
T ss_dssp CSSEEEEEEECCS-SSC
T ss_pred cceeeeEeeeeeh-hhh
Confidence 8888888887755 554
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.63 E-value=9.9e-05 Score=74.08 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=75.4
Q ss_pred CCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecCCCC-CCCCCCeeEE
Q 006834 221 GNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISSKRL-PYPARAFDMA 290 (629)
Q Consensus 221 g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~~~L-p~pd~sFDlV 290 (629)
..+++||-||.|.|..+..+++... +..++.+|+++++++.|++. ...+.+...|.... .-.+++||+|
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 3466999999999999999998753 23567889999999999863 24678888776443 2335789999
Q ss_pred EecCcccccc-----cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 291 HCSGCLIPWY-----MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 291 ~~s~~L~h~~-----~d~~~~L~el~RvLKPGG~liis~P 325 (629)
++-..- +.. -....+++.+.+.|+|||.++.-..
T Consensus 167 i~D~~d-p~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 167 IIDSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCC-CCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 973321 211 1135799999999999999988653
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.62 E-value=9.1e-05 Score=74.87 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=78.3
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---------CCeEEEEecC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---------VPAMIGVISS 277 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---------~~~~~~v~d~ 277 (629)
.|.+.+..........+++||-||.|.|..+..+++... +..++.+|++++.++.|++-. +++.+...|.
T Consensus 91 ~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da 169 (312)
T d2b2ca1 91 SYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG 169 (312)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH
T ss_pred HHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchH
Confidence 344444432222223466899999999999999998753 236778899999999998742 4567777775
Q ss_pred CCC-CCCCCCeeEEEecCccccccc----CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 278 KRL-PYPARAFDMAHCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 278 ~~L-p~pd~sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~P 325 (629)
... .-..++||+|++-..- +... ....+++.+.+.|+|||.++.-..
T Consensus 170 ~~~l~~~~~~yDvII~D~~d-p~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 170 FEFLKNHKNEFDVIITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp HHHHHHCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHhCCCCCCEEEEcCCC-CCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 432 2235789999973321 2111 124689999999999999998754
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00012 Score=73.23 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=74.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecCCCC-CCCCCCeeEEE
Q 006834 222 NIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISSKRL-PYPARAFDMAH 291 (629)
Q Consensus 222 ~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~~~L-p~pd~sFDlV~ 291 (629)
.+++||-+|.|.|..+..+++... ...++.+|++++.++.|++. ..++.+...|+... .-..++||+|+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 456999999999999999998742 23667789999999999864 25688888886443 23457899999
Q ss_pred ecCccccccc----CHHHHHHHHHhcccCCcEEEEEe
Q 006834 292 CSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 292 ~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~ 324 (629)
+-. ..+... ....+++.+.+.|+|||.+++..
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 743 212211 12368999999999999999865
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.56 E-value=0.00016 Score=71.72 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=81.1
Q ss_pred HHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc---------CCCeEEEEecC
Q 006834 207 AYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER---------GVPAMIGVISS 277 (629)
Q Consensus 207 ~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er---------g~~~~~~v~d~ 277 (629)
.|.+.+..........+++||-+|-|.|..+..++++.. ...++.+|++++.++.|++- .+++.+...|.
T Consensus 60 ~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~ 138 (274)
T d1iy9a_ 60 VYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG 138 (274)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred hchhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH
Confidence 444444333222233456999999999999999998642 22567789999999999863 24678888776
Q ss_pred CCC-CCCCCCeeEEEecCccccccc----CHHHHHHHHHhcccCCcEEEEEeC
Q 006834 278 KRL-PYPARAFDMAHCSGCLIPWYM----YDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 278 ~~L-p~pd~sFDlV~~s~~L~h~~~----d~~~~L~el~RvLKPGG~liis~P 325 (629)
... .-.+++||+|+.-..- +... ....+++.+.+.|+|||.++.-..
T Consensus 139 ~~~l~~~~~~yDvIi~D~~~-p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 139 FMHIAKSENQYDVIMVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp HHHHHTCCSCEEEEEESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHhhcCCCCCEEEEcCCC-CCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 442 2346789999973221 2111 145799999999999999998643
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.52 E-value=0.00033 Score=65.26 Aligned_cols=111 Identities=17% Similarity=0.097 Sum_probs=79.6
Q ss_pred HHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC-CCeEEEEecCCCCC-----C
Q 006834 209 IDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG-VPAMIGVISSKRLP-----Y 282 (629)
Q Consensus 209 i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg-~~~~~~v~d~~~Lp-----~ 282 (629)
++.+.+.+...++. .++|..+|.|..+..+++.+.. +.++|.++.++..|+++. ..+.+.......+. +
T Consensus 7 l~Evl~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~---viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 7 YQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGR---VIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHhcccCc---EEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 55566666665555 8999999999999999998764 456699999999998763 35667666544432 3
Q ss_pred CCCCeeEEEecCccccc--cc------CHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPW--YM------YDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~--~~------d~~~~L~el~RvLKPGG~liis~ 324 (629)
..+.+|.|+.-..+... .. .....|.....+|+|||.+++..
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 35689999974433221 10 12347888899999999999875
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=4.7e-05 Score=75.35 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=71.7
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHh----hcccceec-cccccCCCCC-cccc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYE----RGLIGTYQ-DWCEAFSTYP-RTYD 544 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~e----rgli~~~~-~~~e~f~~yp-~t~D 544 (629)
.|.+|.. |||+|||.|+++.+|+.. +-- |..+|.++.+++.+.+ .|+..... ........++ ..||
T Consensus 100 ~i~pG~~--VLDiG~GsG~lt~~lA~~~~~~G~---V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D 174 (266)
T d1o54a_ 100 DVKEGDR--IIDTGVGSGAMCAVLARAVGSSGK---VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVD 174 (266)
T ss_dssp TCCTTCE--EEEECCTTSHHHHHHHHHTTTTCE---EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEE
T ss_pred CCCCCCE--EEECCCCCCHHHHHHHHHhCCCcE---EEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccccee
Confidence 4788875 999999999999998752 221 2333445566666543 35533221 1111122344 6788
Q ss_pred eeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHHHHHHHHHHhcCCCe
Q 006834 545 LIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEMLVKIRSITEGMRWK 600 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~~~~~~~~~~~l~w~ 600 (629)
.+.. +-.+...+|.++.|+|||||.+++--+ .+.+.++.+.++...|.
T Consensus 175 ~V~~--------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 175 ALFL--------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp EEEE--------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred eeEe--------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 6543 336677899999999999999987644 45555555556656664
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=7.3e-05 Score=76.06 Aligned_cols=114 Identities=13% Similarity=0.106 Sum_probs=67.3
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC----C-eEEEEecCCCCCCCchHHHHhh--------------c---ccceec-
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY----P-VWVMNVVPFHSNPDTLGAIYER--------------G---LIGTYQ- 530 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~er--------------g---li~~~~- 530 (629)
.|.+|.. |||+|||.|+++.+|+.. + |+.. |.++.++..+.+. + .+..+|
T Consensus 95 ~i~pG~r--VLE~GtGsG~lt~~LAr~vg~~G~V~t~-----E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~ 167 (324)
T d2b25a1 95 DINPGDT--VLEAGSGSGGMSLFLSKAVGSQGRVISF-----EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 167 (324)
T ss_dssp TCCTTCE--EEEECCTTSHHHHHHHHHHCTTCEEEEE-----ESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred CCCCCCE--EEEecccccHHHHHHHHHhCCCcEEEEe-----cCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEec
Confidence 3788885 999999999999998753 2 4333 4444566665432 1 133444
Q ss_pred cccccCCCCC-cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe-CHHHHHHHHHHHh--cCCCeEE
Q 006834 531 DWCEAFSTYP-RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD-TVEMLVKIRSITE--GMRWKSQ 602 (629)
Q Consensus 531 ~~~e~f~~yp-~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-~~~~~~~~~~~~~--~l~w~~~ 602 (629)
|.++....++ ..||.|..+ --+-..+|-++-|+|||||.+++-- ..+.+.++-+.++ ++.|...
T Consensus 168 di~~~~~~~~~~~fD~V~LD--------~p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 168 DISGATEDIKSLTFDAVALD--------MLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp CTTCCC-------EEEEEEC--------SSSTTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred chhhcccccCCCCcceEeec--------CcCHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence 5555444455 688977641 1111248899999999999999754 3444444444443 5677543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.0007 Score=64.27 Aligned_cols=93 Identities=14% Similarity=0.038 Sum_probs=71.5
Q ss_pred CeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCC-CeEEEEecCCCCCCCCCCeeEEEecCcccc
Q 006834 224 RTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGV-PAMIGVISSKRLPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 224 ~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~-~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h 298 (629)
.++||+|+|.|.-+.-|+-..+. ..++.+|.+..-+.+.++ -+. ++.+.....+.+. ...+||+|+|-.+-
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~-~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAFA-- 142 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCSS--
T ss_pred CceeeeeccCCceeeehhhhccc-ceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhhc--
Confidence 38999999999998888876553 367788999988887764 244 5777776777654 35689999874432
Q ss_pred cccCHHHHHHHHHhcccCCcEEEEE
Q 006834 299 WYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 299 ~~~d~~~~L~el~RvLKPGG~liis 323 (629)
....++.-+...+++||.+++.
T Consensus 143 ---~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 143 ---SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ---SHHHHHHHHTTSEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEE
Confidence 4567888999999999999887
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.34 E-value=4.5e-05 Score=79.89 Aligned_cols=110 Identities=10% Similarity=0.032 Sum_probs=64.7
Q ss_pred HHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc------------cce-ec
Q 006834 465 MTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL------------IGT-YQ 530 (629)
Q Consensus 465 v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl------------i~~-~~ 530 (629)
+.+..+.++ |.++.. |||+|||.|.++..++.. ++ -.|+.+|.++.++..+.++.- .+. -.
T Consensus 205 i~~Il~~l~-Lkpgd~--fLDLGCG~G~~vl~aA~~~g~--~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~ 279 (406)
T d1u2za_ 205 LSDVYQQCQ-LKKGDT--FMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 279 (406)
T ss_dssp HHHHHHHTT-CCTTCE--EEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHhC-CCCCCE--EEeCCCCCcHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence 333334343 778775 999999999999887654 43 234555666567777665431 111 11
Q ss_pred cccccCCCCC------cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 531 DWCEAFSTYP------RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 531 ~~~e~f~~yp------~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.....|..-+ ...|++.+++ +...-++...|.||-|+|||||.+|..+.
T Consensus 280 ~~~~~f~~~~~~d~~~~~adVV~inn----~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 280 SLKKSFVDNNRVAELIPQCDVILVNN----FLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECC----TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred eeeechhhccccccccccceEEEEec----ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 1122332222 1234444321 11223567899999999999999998754
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.0013 Score=66.64 Aligned_cols=128 Identities=14% Similarity=0.183 Sum_probs=83.0
Q ss_pred cEeecCCeeeecCCCCCCCCch----HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHH
Q 006834 184 WIQVEGHRFRFPGGGTTFPNGA----DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQ 259 (629)
Q Consensus 184 Wv~~~g~~~~Fpgggt~f~~ga----~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~ 259 (629)
|....|-.+.++ ...|-+.. +.+++.+.+++...++. +|||+-||+|.|+..|++.+..+ +++|.++++
T Consensus 174 ~~~~~g~~~~i~--p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~--~vlDLycG~G~fsl~La~~~~~V---~gvE~~~~a 246 (358)
T d1uwva2 174 WYDSNGLRLTFS--PRDFIQVNAGVNQKMVARALEWLDVQPED--RVLDLFCGMGNFTLPLATQAASV---VGVEGVPAL 246 (358)
T ss_dssp EEEETTEEEECC--SSSCCCSBHHHHHHHHHHHHHHHTCCTTC--EEEEESCTTTTTHHHHHTTSSEE---EEEESCHHH
T ss_pred EEecCCEEEEEC--CchhhccchhhhhHHHHHHHHhhccCCCc--eEEEecccccccchhccccccEE---EeccCcHHH
Confidence 444444444443 23343433 44455666666554444 89999999999999999887644 556999999
Q ss_pred HHHHHHc----C-CCeEEEEecCCCC----CCCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 260 VQFALER----G-VPAMIGVISSKRL----PYPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 260 i~~A~er----g-~~~~~~v~d~~~L----p~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
++.|+++ + .++.|..++.... ......||+|+...--.. ....+..+.+. +|.-.++++
T Consensus 247 i~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 247 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp HHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHHH-CCSEEEEEE
T ss_pred HHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCcc----HHHHHHHHHHc-CCCEEEEEe
Confidence 9999864 3 3678888776542 223567999987553322 12456666553 677777777
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=0.00012 Score=72.24 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=69.3
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC----C-eEEEEecCCCCCCCchHHHHhh------cccceeccccccC--CCCC
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY----P-VWVMNVVPFHSNPDTLGAIYER------GLIGTYQDWCEAF--STYP 540 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~----~-v~~mnv~~~~~~~~~l~~~~er------gli~~~~~~~e~f--~~yp 540 (629)
.+.+|.. |||+|||.|+++.+|+.. + |+. .|.++.+++.+.++ +....++..+..+ ..+|
T Consensus 93 ~i~PG~~--VLE~G~GsG~lt~~La~~vgp~G~V~~-----~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~ 165 (264)
T d1i9ga_ 93 DIFPGAR--VLEAGAGSGALTLSLLRAVGPAGQVIS-----YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 165 (264)
T ss_dssp TCCTTCE--EEEECCTTSHHHHHHHHHHCTTSEEEE-----ECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred CCCCCCE--EEecCcCCcHHHHHHHHhhCCCcEEEE-----ecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence 4788875 999999999999999753 2 333 34445677777552 2222222223333 2455
Q ss_pred -cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC-HHH-HHHHHHHHhcCCCe
Q 006834 541 -RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT-VEM-LVKIRSITEGMRWK 600 (629)
Q Consensus 541 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~-~~~-~~~~~~~~~~l~w~ 600 (629)
.+||.|.. +-=+-..++-++.|+|||||.+++-.+ .+. ...++.+-..-.|.
T Consensus 166 ~~~fDaV~l--------dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 166 DGSVDRAVL--------DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp TTCEEEEEE--------ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred CCCcceEEE--------ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 89998754 112334588999999999999988654 333 33344442333463
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.00031 Score=65.30 Aligned_cols=112 Identities=17% Similarity=0.048 Sum_probs=69.6
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC---
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP--- 281 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp--- 281 (629)
+-.-+.+|.+..... ....+|||+||+.|.|+.++.+.......+.++|+.+. +.-....+..++.....
T Consensus 6 aafKL~EI~~k~~l~-k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~i~~~~~~~~d~~~~~~~~ 78 (180)
T d1ej0a_ 6 AWFKLDEIQQSDKLF-KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DPIVGVDFLQGDFRDELVMK 78 (180)
T ss_dssp HHHHHHHHHHHHCCC-CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CCCTTEEEEESCTTSHHHHH
T ss_pred HHHHHHHHHHHhCcc-CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------cccCCceEeecccccchhhh
Confidence 333445555554432 22448999999999999999875322224556676531 12234667776654321
Q ss_pred -----CCCCCeeEEEecCcccccccCH-----------HHHHHHHHhcccCCcEEEEEe
Q 006834 282 -----YPARAFDMAHCSGCLIPWYMYD-----------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 -----~pd~sFDlV~~s~~L~h~~~d~-----------~~~L~el~RvLKPGG~liis~ 324 (629)
...+.||+|++-.+. ....+. ...+.-+.++|++||.|++-.
T Consensus 79 ~~~~~~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 79 ALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 235689999985554 222121 135666789999999999974
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.20 E-value=0.0022 Score=62.04 Aligned_cols=95 Identities=8% Similarity=0.053 Sum_probs=69.2
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHH----cCC-CeEEEEecCCCCCC---CCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALE----RGV-PAMIGVISSKRLPY---PARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~e----rg~-~~~~~v~d~~~Lp~---pd~sFDlV~~s~ 294 (629)
..+++|||+|.|.-+.-|+-..+. ..++-+|.+..-+.+.++ -+. ++.+....++.+.. ..++||+|+|-.
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~-~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCeEEeecCCCchHHHHHHHhCCC-ccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 348999999999888888865432 356778999887777653 243 45666555554432 246899999854
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEE
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis 323 (629)
+- ....++.-....|++||.+++.
T Consensus 150 va-----~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 150 VA-----RLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp CS-----CHHHHHHHHGGGEEEEEEEEEE
T ss_pred hh-----CHHHHHHHHhhhcccCCEEEEE
Confidence 33 5678899999999999999886
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.17 E-value=6.7e-05 Score=76.05 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=75.1
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc--cceec----cccccCCCCCcccceeeccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ----DWCEAFSTYPRTYDLIHASG 550 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~----~~~e~f~~yp~t~Dl~H~~~ 550 (629)
+.|||++||+|||+.+++... -.|+.+|.++..+..+.+ -|+ +-+++ +|.+.+..-..+||+|-++-
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 569999999999999987532 356667777667766653 344 11222 12222333347899987653
Q ss_pred c-ccccCC-----CcCHHHHHHHHhhcccCCcEEEEEeC------HHHHHHHHHHHhcCCCeEEEee
Q 006834 551 V-FSIYQD-----RCDITNILLEMDRILRPEGTVIFRDT------VEMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 551 ~-fs~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~~ 605 (629)
= |+..+. ......++..+-++|||||.+++... .+....|.+.+..-..+.+++.
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2 221111 11234588899999999999999632 2345556666666666666553
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.10 E-value=0.00065 Score=70.99 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=81.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcC----Cc--------EeEEEeecCcHHHHHHHHHc----CC-
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRD----IL--------TMSFARRDTHEAQVQFALER----GV- 268 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g----~~--------~v~i~gvDiS~~~i~~A~er----g~- 268 (629)
...++.+.+++....+. +|+|..||+|.|...+.++- .. ...+.|.|+++.+...|+-+ +.
T Consensus 148 ~~Iv~~mv~ll~~~~~~--~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~ 225 (425)
T d2okca1 148 RPLIQAMVDCINPQMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 225 (425)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred hhhhHhhheeccCcccc--eeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence 56677888887655444 89999999999998776641 00 12367889999999988743 22
Q ss_pred --CeEEEEecCCCCCCCCCCeeEEEecCccccccc---------------C-HHHHHHHHHhcccCCcEEEEEeCC
Q 006834 269 --PAMIGVISSKRLPYPARAFDMAHCSGCLIPWYM---------------Y-DGLYLLEVDRVLRPGGYWILSGPP 326 (629)
Q Consensus 269 --~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~---------------d-~~~~L~el~RvLKPGG~liis~P~ 326 (629)
...+...|.... .+...||+|+++.-+..-.. + ...++..+.+.|++||.+.+..|.
T Consensus 226 ~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 226 TDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp SSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 233444444332 34678999999776621110 0 124899999999999999999874
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=7.4e-05 Score=71.97 Aligned_cols=94 Identities=18% Similarity=0.247 Sum_probs=55.1
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHh----hcc----cceecccc-ccCCCCC-
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYE----RGL----IGTYQDWC-EAFSTYP- 540 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~e----rgl----i~~~~~~~-e~f~~yp- 540 (629)
.+.+|.. |||+|||+|-+++.|++. .-.| ..+|..+..+..+.+ .++ +......+ ..+..+|
T Consensus 73 ~l~~g~~--VLdiG~GsGy~ta~la~l~~~~g~V---~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~ 147 (224)
T d1i1na_ 73 QLHEGAK--ALDVGSGSGILTACFARMVGCTGKV---IGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE 147 (224)
T ss_dssp TSCTTCE--EEEETCTTSHHHHHHHHHHCTTCEE---EEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG
T ss_pred ccCCCCe--EEEecCCCCHHHHHHHHHhCCCceE---EEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch
Confidence 3566654 999999999887777643 2122 222444345554432 232 11111122 2334455
Q ss_pred -cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 541 -RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 541 -~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
..||.|++.+... .+..++-+.|||||.+|+-
T Consensus 148 ~~~fD~I~~~~~~~---------~ip~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 148 EAPYDAIHVGAAAP---------VVPQALIDQLKPGGRLILP 180 (224)
T ss_dssp GCCEEEEEECSBBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred hhhhhhhhhhcchh---------hcCHHHHhhcCCCcEEEEE
Confidence 7899999855443 2344667899999999984
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.03 E-value=0.0013 Score=66.09 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=77.7
Q ss_pred HHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----C-CCeEEEEecCCCCCCCCCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----G-VPAMIGVISSKRLPYPARA 286 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g-~~~~~~v~d~~~Lp~pd~s 286 (629)
....+...++. +|||+.||.|.=+..|++.......+++.|.++.-++..+++ + .++.+...|...++.....
T Consensus 108 ~~~~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~ 185 (313)
T d1ixka_ 108 PPVALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE 185 (313)
T ss_dssp HHHHHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred hhhcccCCccc--eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 34445555555 999999999998888877543333567789999888877643 3 3455555566666666789
Q ss_pred eeEEEe------cCcccc-----cccCH----------HHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 287 FDMAHC------SGCLIP-----WYMYD----------GLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 287 FDlV~~------s~~L~h-----~~~d~----------~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
||.|++ ..++.. |.... ..+|....+.|||||+++.++-...
T Consensus 186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 999996 221211 11011 1478899999999999999986554
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.00016 Score=73.42 Aligned_cols=100 Identities=10% Similarity=0.064 Sum_probs=60.1
Q ss_pred cCCCCeeEEEeecccchhHHhhhhC-CCeEEEEecCCCCCCCchHHHHhh-----------cc-cceeccccccCCCCC-
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSK-YPVWVMNVVPFHSNPDTLGAIYER-----------GL-IGTYQDWCEAFSTYP- 540 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~-~~v~~mnv~~~~~~~~~l~~~~er-----------gl-i~~~~~~~e~f~~yp- 540 (629)
+.++.+ |||+|||.|.++-.++. .+. .+++.+|.++.++..+.++ |+ .+-+.=.|..|...|
T Consensus 149 l~~~~~--vlD~GcG~G~~~~~~a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~ 224 (328)
T d1nw3a_ 149 MTDDDL--FVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW 224 (328)
T ss_dssp CCTTCE--EEEETCTTSHHHHHHHHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHH
T ss_pred CCCCCE--EEEcCCCCCHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccc
Confidence 677764 99999999998876653 233 3455666665555555432 22 111111235555544
Q ss_pred --ccc--ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 541 --RTY--DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 541 --~t~--Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
..+ |+|-+++ +...-++...|.||-|+|||||.+|...
T Consensus 225 ~~~~~~advi~~~~----~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 225 RERIANTSVIFVNN----FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHCSEEEECC----TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccCcceEEEEcc----eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 334 3433321 1112356779999999999999999864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=96.93 E-value=9.3e-05 Score=71.40 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=56.4
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh--cc--cceeccccccCCCCC--cccceeec
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER--GL--IGTYQDWCEAFSTYP--RTYDLIHA 548 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er--gl--i~~~~~~~e~f~~yp--~t~Dl~H~ 548 (629)
+.++. .|||+|||+|-++|.|++..=. |+.++..+.....+.++ +. +-+.+ ...+.-+| ..||.|++
T Consensus 68 l~~g~--~VLdIG~GsGy~ta~La~l~~~---V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~pfD~Iiv 140 (224)
T d1vbfa_ 68 LHKGQ--KVLEIGTGIGYYTALIAEIVDK---VVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEKPYDRVVV 140 (224)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGCCEEEEEE
T ss_pred hcccc--eEEEecCCCCHHHHHHHHHhcc---cccccccHHHHHHHHHHHhccccccccc--CchhhcchhhhhHHHHHh
Confidence 66766 5999999999999888765322 33344444555555443 11 22232 12344566 56999998
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.+... .+..++-+.|+|||.+|+-
T Consensus 141 ~~a~~---------~ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 141 WATAP---------TLLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp SSBBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred hcchh---------hhhHHHHHhcCCCCEEEEE
Confidence 55432 2233444679999999983
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0022 Score=63.47 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=74.7
Q ss_pred HhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CCCeEEEEecCCCCC--CCCCC
Q 006834 213 NELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GVPAMIGVISSKRLP--YPARA 286 (629)
Q Consensus 213 ~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~~~~~~v~d~~~Lp--~pd~s 286 (629)
..++...++. +|||+.+|.|.=+..|++.+.. ..++++|.++.-++..+++ +.+....+.+..... ...+.
T Consensus 95 ~~~L~~~~g~--~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~ 171 (284)
T d1sqga2 95 MTWLAPQNGE--HILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ 171 (284)
T ss_dssp HHHHCCCTTC--EEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred ccccCccccc--eeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhccccc
Confidence 3444555555 9999999999999999887654 3577889998877666543 555444443332221 33568
Q ss_pred eeEEEe------cCcccc-------cccC--------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 287 FDMAHC------SGCLIP-------WYMY--------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 287 FDlV~~------s~~L~h-------~~~d--------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
||.|++ ..++-. +.+. ...+|..+.+.|||||+++.++-..+
T Consensus 172 fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 172 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred ccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 999995 222211 1111 12578899999999999999986554
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.00029 Score=69.84 Aligned_cols=130 Identities=16% Similarity=0.286 Sum_probs=81.8
Q ss_pred EEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHh----hcc--cceec-cccccCCCCC-cccceeeccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYE----RGL--IGTYQ-DWCEAFSTYP-RTYDLIHASGVF 552 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~e----rgl--i~~~~-~~~e~f~~yp-~t~Dl~H~~~~f 552 (629)
.|||+|||+|..|.+|+.. +- ..|+.+|-++..+.++.+ -|+ |.+++ ||.+. .+ ..||+|=|+-=+
T Consensus 111 ~vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 111 RILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA---LAGQQFAMIVSNPPY 185 (274)
T ss_dssp EEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---GTTCCEEEEEECCCC
T ss_pred ceeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc---cCCCceeEEEecchh
Confidence 3999999999999988653 22 245566666555555432 233 45555 65543 45 689998775221
Q ss_pred c------------ccCCC----------cCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCe-EEEe-ecCC
Q 006834 553 S------------IYQDR----------CDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWK-SQIM-DHES 608 (629)
Q Consensus 553 s------------~~~~~----------c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~-~~~~-~~e~ 608 (629)
= .+... -....++.+..+.|+|||.+++--..+....+.+++....|. +.++ |.
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl-- 263 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY-- 263 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT--
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECC--
Confidence 0 01111 112348899999999999999954333456788888887885 3333 33
Q ss_pred CCCCCceEEEEE
Q 006834 609 GPFNPEKILFAA 620 (629)
Q Consensus 609 ~~~~~e~~l~~~ 620 (629)
.+.+++++++
T Consensus 264 --~g~~R~v~~r 273 (274)
T d2b3ta1 264 --GDNERVTLGR 273 (274)
T ss_dssp --TSSEEEEEEE
T ss_pred --CCCceEEEEe
Confidence 2578888875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.79 E-value=0.00035 Score=68.00 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCCeeEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcc---cc-eeccccccCCCCCcccceeec
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGL---IG-TYQDWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergl---i~-~~~~~~e~f~~yp~t~Dl~H~ 548 (629)
..++++|||+|||.|.++.+|+++ .++++.+- +++-+.+. |. +-+| -|...|. .|++..
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp---------~vi~~~~~~~ri~~~~gd---~~~~~p~-~D~~~l 145 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP---------QVIENAPPLSGIEHVGGD---MFASVPQ-GDAMIL 145 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---------HHHTTCCCCTTEEEEECC---TTTCCCC-EEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch---------hhhhccCCCCCeEEecCC---ccccccc-ceEEEE
Confidence 467899999999999999999865 34454432 22333333 22 2233 3566774 499888
Q ss_pred cccccccCCCcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 549 SGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 549 ~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
.+++-.|.+. +...||..+-+.|+|||.++|.|
T Consensus 146 ~~vLh~~~de-~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 146 KAVCHNWSDE-KCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp ESSGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ehhhhhCCHH-HHHHHHHHHHHHcCCCcEEEEEE
Confidence 7887776542 34569999999999999999976
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0011 Score=64.72 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC---CCeEEEEecCCCCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG---VPAMIGVISSKRLPY 282 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg---~~~~~~v~d~~~Lp~ 282 (629)
...++.|.+.+...+++ .|||||||.|.++..|++++..+ +++|+++.+++..+++. .++.+..+|...+++
T Consensus 7 ~~~~~~Iv~~~~~~~~d--~vlEIGpG~G~LT~~Ll~~~~~v---~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTEPVGERLDQL---TVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEEECCTTTTTHHHHHTTCSCE---EEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCchHHHHHHHccCCce---EEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 45677788887665555 89999999999999999987654 55599999999988753 457888888776653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.0013 Score=62.70 Aligned_cols=129 Identities=15% Similarity=0.136 Sum_probs=78.6
Q ss_pred CCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCch----HHHHhhcc---cceec-cccccCCC-----CCc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTL----GAIYERGL---IGTYQ-DWCEAFST-----YPR 541 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l----~~~~ergl---i~~~~-~~~e~f~~-----yp~ 541 (629)
.+-++||++|+|+|--+.+|++- +--+..+- ..+... +.+.+-|+ |.+.+ +-.+.+.. .+.
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie---~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCE---VDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEE---SCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEe---echhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccC
Confidence 44678999999999888888653 22233332 222232 33333354 33333 22232222 257
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH---------------H-HHHHHHHHHhcCCCeEEEee
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV---------------E-MLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~---------------~-~~~~~~~~~~~l~w~~~~~~ 605 (629)
+||+|..++ +.-.....+..+-+.|||||.+|+-|-. . +.+-.+.|.+.-+|...+.-
T Consensus 135 ~fD~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llP 208 (219)
T d2avda1 135 TFDVAVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP 208 (219)
T ss_dssp CEEEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC
T ss_pred CccEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEee
Confidence 899988744 2334566777888999999999996431 1 22334556777889988763
Q ss_pred cCCCCCCCceEEEEEe
Q 006834 606 HESGPFNPEKILFAAK 621 (629)
Q Consensus 606 ~e~~~~~~e~~l~~~K 621 (629)
. .+.|+||+|
T Consensus 209 i------gdGl~ia~K 218 (219)
T d2avda1 209 L------GDGLTLAFK 218 (219)
T ss_dssp S------TTCEEEEEE
T ss_pred c------CCeeEEEEe
Confidence 3 356999998
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=96.67 E-value=0.0012 Score=66.48 Aligned_cols=125 Identities=16% Similarity=0.135 Sum_probs=68.9
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCe-EEEEecCCCCCCCchHH---HHhh-cccc----eec----cccccCCCCCc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPV-WVMNVVPFHSNPDTLGA---IYER-GLIG----TYQ----DWCEAFSTYPR 541 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v-~~mnv~~~~~~~~~l~~---~~er-gli~----~~~----~~~e~f~~yp~ 541 (629)
+..|+ .|||+.||+|||+-+++..+- .|.+| |.++..+.. ++++ |+=. ++. +|.+.+..-.+
T Consensus 142 ~~~g~--~VLdlf~~~G~~sl~aa~~ga~~V~~v---D~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~ 216 (317)
T d2b78a2 142 SAAGK--TVLNLFSYTAAFSVAAAMGGAMATTSV---DLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHL 216 (317)
T ss_dssp TTBTC--EEEEETCTTTHHHHHHHHTTBSEEEEE---ESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred hhCCC--ceeecCCCCcHHHHHHHhCCCceEEEe---cCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcC
Confidence 44554 599999999999987766544 44444 333334443 3333 4411 121 12222222346
Q ss_pred ccceeeccc-cccccCC-C----cCHHHHHHHHhhcccCCcEEEEEe------CHHHHHHHHHHHhcCCCeEEEe
Q 006834 542 TYDLIHASG-VFSIYQD-R----CDITNILLEMDRILRPEGTVIFRD------TVEMLVKIRSITEGMRWKSQIM 604 (629)
Q Consensus 542 t~Dl~H~~~-~fs~~~~-~----c~~~~~l~e~dRiLrPgG~~i~~d------~~~~~~~~~~~~~~l~w~~~~~ 604 (629)
.||+|=++= -|+..+. . -+...++...-++|+|||.+++.- ..+....|.+.+..-.+.....
T Consensus 217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 899976541 1322111 1 123458888889999999999963 2234455566665555555433
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.64 E-value=0.0012 Score=64.77 Aligned_cols=132 Identities=17% Similarity=0.254 Sum_probs=80.0
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHH---hh-cc---c
Q 006834 454 LREDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIY---ER-GL---I 526 (629)
Q Consensus 454 f~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~---er-gl---i 526 (629)
|..++...+.++. ..+..|. +||||+||+|+|+-.+++++- -.|..+|..+..++.+. ++ |+ |
T Consensus 90 f~~~~~~er~ri~------~~~~~g~--~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v 159 (260)
T d2frna1 90 FSPANVKERVRMA------KVAKPDE--LVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRM 159 (260)
T ss_dssp CCGGGHHHHHHHH------HHCCTTC--EEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTE
T ss_pred EecCCHHHHHHHH------hhcCCcc--EEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceE
Confidence 4555555554432 2245665 499999999999988876652 13444555544444433 22 44 4
Q ss_pred ceeccccccCCCCC--cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH-------HHHHHHHHHHhcC
Q 006834 527 GTYQDWCEAFSTYP--RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV-------EMLVKIRSITEGM 597 (629)
Q Consensus 527 ~~~~~~~e~f~~yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~-------~~~~~~~~~~~~l 597 (629)
-+++ .....++ ..||.|..+-.. .-...|-+.-++|+|||++.+.+.. +..+.+++++...
T Consensus 160 ~~~~---~D~~~~~~~~~~D~Ii~~~p~-------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~ 229 (260)
T d2frna1 160 SAYN---MDNRDFPGENIADRILMGYVV-------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY 229 (260)
T ss_dssp EEEC---SCTTTCCCCSCEEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred EEEE---cchHHhccCCCCCEEEECCCC-------chHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHc
Confidence 4444 3333344 679987763222 1245677788999999999764321 2356777888887
Q ss_pred CCeEEEee
Q 006834 598 RWKSQIMD 605 (629)
Q Consensus 598 ~w~~~~~~ 605 (629)
.+++.++.
T Consensus 230 g~~v~~~~ 237 (260)
T d2frna1 230 GYDVEKLN 237 (260)
T ss_dssp TCEEEEEE
T ss_pred CCceEEEE
Confidence 88776543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0081 Score=59.20 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=64.0
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC------CCeEEEEecCCC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG------VPAMIGVISSKR 279 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg------~~~~~~v~d~~~ 279 (629)
...++.|.+.+....+. .|||||+|.|.++..|++++.. ++++|+++.+++..+++. .++.+..+|...
T Consensus 7 ~~i~~kIv~~~~~~~~d--~VlEIGPG~G~LT~~Ll~~~~~---v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~ 81 (278)
T d1zq9a1 7 PLIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKK---VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 81 (278)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSE---EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHHHHhCCCCCC--EEEEECCCchHHHHHHHhcCCc---EEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence 45677787877665555 8999999999999999999764 455699999999988651 357888888877
Q ss_pred CCCCCCCeeEEEecCcc
Q 006834 280 LPYPARAFDMAHCSGCL 296 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L 296 (629)
..++ .++.|+++.-+
T Consensus 82 ~~~~--~~~~vV~NLPY 96 (278)
T d1zq9a1 82 TDLP--FFDTCVANLPY 96 (278)
T ss_dssp SCCC--CCSEEEEECCG
T ss_pred hhhh--hhhhhhcchHH
Confidence 7654 35677776644
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.61 E-value=0.00098 Score=64.34 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=61.4
Q ss_pred CCeEEEeCCCCchHHHHHHH----cCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC----CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLK----RDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP----YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~----~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp----~pd~sFDlV~~s~ 294 (629)
+.+|||||++.|.-+..+++ .+.. ..+.++|+.+.....+.....++.+..+|..... +....+|+|+.-.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~-~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~ 159 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 159 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCC-ceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence 44899999999977666553 2322 2567779876554444344466888888765432 3355688887643
Q ss_pred cccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 295 CLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 295 ~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
. |.......-+ ++...|+|||++++..
T Consensus 160 ~--H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 160 A--HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp S--CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred C--cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 3 2221111223 4668999999999973
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.55 E-value=0.0062 Score=58.77 Aligned_cols=160 Identities=12% Similarity=0.063 Sum_probs=96.6
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHH--hhhhCCCeEEEEecCCCCC-CCchH-HHHhhcc--cce
Q 006834 455 REDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFA--AAMSKYPVWVMNVVPFHSN-PDTLG-AIYERGL--IGT 528 (629)
Q Consensus 455 ~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfa--a~l~~~~v~~mnv~~~~~~-~~~l~-~~~ergl--i~~ 528 (629)
....+.|.+|+-.-..++..+......+++|+|+|-|==| -|+...+. =+.++..... .+.|+ ++.+=|| +-+
T Consensus 46 ~~~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~-~v~Lves~~KK~~FL~~v~~~L~L~n~~i 124 (239)
T d1xdza_ 46 TEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHL-HVTIVDSLNKRITFLEKLSEALQLENTTF 124 (239)
T ss_dssp CSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred CCHHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCc-cceeecchHHHHHHHHHHHHHhCCCCcEE
Confidence 3445889999987666666554444568999999977323 33333332 1223332221 22333 3444477 446
Q ss_pred eccccccCCC---CCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE---eCHHHHHHHHHHHhcCCCeEE
Q 006834 529 YQDWCEAFST---YPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR---DTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 529 ~~~~~e~f~~---yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~---d~~~~~~~~~~~~~~l~w~~~ 602 (629)
+|+-.|.+.. +...||+|=| .+-..+..++.-....|+|||.+++- +-.+.+...++..+.+.++..
T Consensus 125 ~~~R~E~~~~~~~~~~~~D~v~s-------RAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~ 197 (239)
T d1xdza_ 125 CHDRAETFGQRKDVRESYDIVTA-------RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE 197 (239)
T ss_dssp EESCHHHHTTCTTTTTCEEEEEE-------ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred EeehhhhccccccccccceEEEE-------hhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEE
Confidence 6766665543 4468999887 33467788888889999999999995 444567777777888888764
Q ss_pred Eee-cC-CCCCCCceEEEEEec
Q 006834 603 IMD-HE-SGPFNPEKILFAAKT 622 (629)
Q Consensus 603 ~~~-~e-~~~~~~e~~l~~~K~ 622 (629)
-+. -+ ......-.|++.+|.
T Consensus 198 ~v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 198 NIHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp EEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEeCCCCCCCEEEEEEEEC
Confidence 322 11 111123357777764
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.48 E-value=0.0024 Score=61.97 Aligned_cols=113 Identities=15% Similarity=0.046 Sum_probs=62.8
Q ss_pred hHHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHH--H-HHHcCCC-eEEEEe-cCCC
Q 006834 205 ADAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQ--F-ALERGVP-AMIGVI-SSKR 279 (629)
Q Consensus 205 a~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~--~-A~erg~~-~~~~v~-d~~~ 279 (629)
+...+..|.+.....++. +|+|+|||.|.++.+++++. .+.++.++++.-...+ . ....+-+ +.+... +..
T Consensus 51 ~~~Kl~~~~~~~~~~~~~--~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~- 126 (257)
T d2p41a1 51 GSAKLRWFVERNLVTPEG--KVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVF- 126 (257)
T ss_dssp HHHHHHHHHHTTSSCCCE--EEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTT-
T ss_pred HHHHHHHHHHhcCccCCC--eEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchhhhhHH-
Confidence 333344454444344333 89999999999999999874 2345555455211000 0 0000111 122211 122
Q ss_pred CCCCCCCeeEEEecCcccccccCH-------HHHHHHHHhcccCCcEEEEEe
Q 006834 280 LPYPARAFDMAHCSGCLIPWYMYD-------GLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 280 Lp~pd~sFDlV~~s~~L~h~~~d~-------~~~L~el~RvLKPGG~liis~ 324 (629)
..+.+..|+|+|-..- . ..++ -.+|.-+.+.|+|||-|++-+
T Consensus 127 -~l~~~~~D~vlcDm~e-s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 127 -FIPPERCDTLLCDIGE-S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp -TSCCCCCSEEEECCCC-C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred -hcCCCcCCEEEeeCCC-C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence 2356789999996543 2 1121 146677778999999998865
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=96.45 E-value=0.0022 Score=63.15 Aligned_cols=153 Identities=10% Similarity=0.146 Sum_probs=89.6
Q ss_pred hhhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcc---cc
Q 006834 455 REDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGL---IG 527 (629)
Q Consensus 455 ~~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgl---i~ 527 (629)
+.||+.+-..+..+.... ....|+|+|||.|..+.++++.+= .+|+.+|-++.-+.++.+ -|+ +.
T Consensus 92 RpeTE~lv~~~~~~~~~~------~~~~vld~g~GsG~i~~~la~~~~--~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~ 163 (271)
T d1nv8a_ 92 RPETEELVELALELIRKY------GIKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFF 163 (271)
T ss_dssp CTTHHHHHHHHHHHHHHH------TCCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEE
T ss_pred hhhhhhhhhhhhhhhccc------cccEEEEeeeeeehhhhhhhhccc--ceeeechhhhhHHHHHHHHHHHcCCCceeE
Confidence 345666666555544322 244699999999988888865532 134455555455555543 244 34
Q ss_pred eec-cccccCCCCCcccceeeccc-------ccc---cc-------CCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHH
Q 006834 528 TYQ-DWCEAFSTYPRTYDLIHASG-------VFS---IY-------QDRCDITNILLEMDRILRPEGTVIFRDTVEMLVK 589 (629)
Q Consensus 528 ~~~-~~~e~f~~yp~t~Dl~H~~~-------~fs---~~-------~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~ 589 (629)
+++ +|.+.+......||+|=++= ... .+ .....++.+-.=+.++|+|||++++--..+.-..
T Consensus 164 i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~ 243 (271)
T d1nv8a_ 164 VRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEE 243 (271)
T ss_dssp EEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHH
T ss_pred EeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHH
Confidence 444 55555544446899876641 111 01 1111122221113689999999999655455667
Q ss_pred HHHHHhcCCCeEEEeecCCCCCCCceEEEEEec
Q 006834 590 IRSITEGMRWKSQIMDHESGPFNPEKILFAAKT 622 (629)
Q Consensus 590 ~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 622 (629)
|+++++...| ..|-. +.+++++++|+
T Consensus 244 v~~l~~~~g~---~kDl~----g~~R~~~~~k~ 269 (271)
T d1nv8a_ 244 LKKIVSDTVF---LKDSA----GKYRFLLLNRR 269 (271)
T ss_dssp HTTTSTTCEE---EECTT----SSEEEEEEECC
T ss_pred HHHHHHhCCE---EeccC----CCcEEEEEEEc
Confidence 7888776655 23332 57899999996
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.44 E-value=0.004 Score=58.28 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=73.4
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcc-cc-eeccccccCCCCCcccceeeccccccccCCCc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGL-IG-TYQDWCEAFSTYPRTYDLIHASGVFSIYQDRC 559 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergl-i~-~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c 559 (629)
+|||+|||+|+++.+++.++- .+|+.+|.++..+..+.+.-- .+ ...-.+.....++..||+|=++-=|.......
T Consensus 49 ~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~~~ 126 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRKHA 126 (201)
T ss_dssp EEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSSTTT
T ss_pred EEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccccccc
Confidence 599999999999987777764 245555666567777665311 11 11122345566788899998877776666666
Q ss_pred CHHHHHHHHhhcccCCcEEEE--EeCHHHHHHHHHHHhcCCCeEEE
Q 006834 560 DITNILLEMDRILRPEGTVIF--RDTVEMLVKIRSITEGMRWKSQI 603 (629)
Q Consensus 560 ~~~~~l~e~dRiLrPgG~~i~--~d~~~~~~~~~~~~~~l~w~~~~ 603 (629)
+++++... +.+++.+.. ....+....++.+.....|....
T Consensus 127 d~~~l~~~----~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 127 DRPFLLKA----FEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp THHHHHHH----HHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred cHHHHHHH----HhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 76665432 333444333 34455566677888888887653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.41 E-value=0.0045 Score=63.65 Aligned_cols=96 Identities=13% Similarity=0.014 Sum_probs=68.4
Q ss_pred CCeEEEeCCCCchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHc----CCC----------------eEEEEecCCCCC
Q 006834 223 IRTAVDTGCGVASWGAYLLK-RDILTMSFARRDTHEAQVQFALER----GVP----------------AMIGVISSKRLP 281 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~er----g~~----------------~~~~v~d~~~Lp 281 (629)
+.+|||..||+|..+...+. .+.. .++..|+|+.+++.++++ +.. +.+...|...+.
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~--~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAE--EVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCS--EEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCC--EEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 34899999999999996554 5543 567789999999999865 211 223333332222
Q ss_pred C-CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 282 Y-PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 282 ~-pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
. ....||+|..-. +. .+..+|..+.+.++.||+|.++..
T Consensus 124 ~~~~~~fDvIDiDP----fG-s~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 AERHRYFHFIDLDP----FG-SPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHSTTCEEEEEECC----SS-CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhhcCcCCcccCCC----CC-CcHHHHHHHHHHhccCCEEEEEec
Confidence 1 245799998633 32 567899999999999999999874
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.41 E-value=0.00022 Score=64.16 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=56.6
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceec-cccccCCCCCcccceeecccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQ-DWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
+|||++||+|+||-..+.++. -+|.-+|...+.+..+.+- |+ +.+++ |+-+.+......||+|.++-=|.
T Consensus 17 ~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy~ 94 (152)
T d2esra1 17 RVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPYA 94 (152)
T ss_dssp EEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred eEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhhc
Confidence 599999999999976666765 2555566664555443332 33 33444 22222333347899998854332
Q ss_pred ccCCCcCHHHHHHHH--hhcccCCcEEEEEe
Q 006834 554 IYQDRCDITNILLEM--DRILRPEGTVIFRD 582 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d 582 (629)
.. ..+.+|..+ .++|+|||.+|+..
T Consensus 95 ~~----~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 95 KE----TIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp HH----HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc----hHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 11 112233222 47999999999854
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0015 Score=70.03 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=77.7
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHc----CC-------------cEeEEEeecCcHHHHHHHHHc--
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKR----DI-------------LTMSFARRDTHEAQVQFALER-- 266 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~----g~-------------~~v~i~gvDiS~~~i~~A~er-- 266 (629)
...++.+.+++....+. +|+|-.||+|.|.....++ .. ....+.|.|+++.+...|+-+
T Consensus 150 ~~Iv~~mv~ll~~~~~~--~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred cchhHhhhhcccCccch--hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 56678888888765554 8999999999998776553 10 011467889999999888743
Q ss_pred --CCCeE------EEEecCCCCC-CCCCCeeEEEecCcccccc------------cC-HHHHHHHHHhcccCCcEEEEEe
Q 006834 267 --GVPAM------IGVISSKRLP-YPARAFDMAHCSGCLIPWY------------MY-DGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 267 --g~~~~------~~v~d~~~Lp-~pd~sFDlV~~s~~L~h~~------------~d-~~~~L~el~RvLKPGG~liis~ 324 (629)
+.... +...+....+ .....||+|+++.-+..-. .+ .-.++..+.+.|+|||++.+..
T Consensus 228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 22211 1222211111 2346799999977552110 01 1248999999999999999998
Q ss_pred CC
Q 006834 325 PP 326 (629)
Q Consensus 325 P~ 326 (629)
|.
T Consensus 308 P~ 309 (524)
T d2ar0a1 308 PD 309 (524)
T ss_dssp EH
T ss_pred eh
Confidence 74
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.34 E-value=0.0013 Score=61.80 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=60.8
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeeccccccccCCCcCH
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFSIYQDRCDI 561 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~ 561 (629)
+|||+|||+|.+|-+++..+. -+|+.+|..+.++..+.+. + ..+.--|..+...|..||+|=++=-|.......++
T Consensus 51 ~VLDlGcGtG~l~i~a~~~ga--~~V~~vDid~~a~~~ar~N-~-~~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~~~D~ 126 (197)
T d1ne2a_ 51 SVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRN-C-GGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSDR 126 (197)
T ss_dssp EEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHH-C-TTSEEEECCGGGCCCCEEEEEECCCC-------CH
T ss_pred EEEEeCCCCcHHHHHHHHcCC--CcccccccCHHHHHHHHHc-c-ccccEEEEehhhcCCcceEEEeCcccchhhhhchH
Confidence 699999999999877766654 2455666665677766553 2 22222335566788999999887666544444444
Q ss_pred HHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHh
Q 006834 562 TNILLEMDRILRPEGTVIFRDTVEMLVKIRSITE 595 (629)
Q Consensus 562 ~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~ 595 (629)
.+ ++..+.+++.++..-......-+++.+.
T Consensus 127 ~f----l~~a~~~~~~iy~ih~~~~~~~i~~~~~ 156 (197)
T d1ne2a_ 127 AF----IDKAFETSMWIYSIGNAKARDFLRREFS 156 (197)
T ss_dssp HH----HHHHHHHEEEEEEEEEGGGHHHHHHHHH
T ss_pred HH----HHHHHhcCCeEEEehhhhHHHHHHHHhh
Confidence 43 2345666665544433344444444443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.31 E-value=0.0006 Score=64.89 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=67.2
Q ss_pred CCeeEEEeecccchhHHhhhhCC---C--eEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCC----CC-ccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY---P--VWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFST----YP-RTY 543 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~---~--v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~----yp-~t~ 543 (629)
.+-++||++|+|+|..+.+|++. + |+++=+.|.... .....+..-|+ |..++ +..+.++. ++ .+|
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~-~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAA-ITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHH-HHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHH-HHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 34578999999999988888752 3 333333221111 22233344576 44444 23333333 33 679
Q ss_pred ceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcCCCeEEE
Q 006834 544 DLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRD-----TVEMLVKIRSITEGMRWKSQI 603 (629)
Q Consensus 544 Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~~~ 603 (629)
|++..++-.+.| .....+.|.-|+|||||.+|+-| ..+.+..|+. .=+|....
T Consensus 134 D~ifiD~~~~~~----~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 134 DMVFLDHWKDRY----LPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEEEECSCGGGH----HHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred ceeeeccccccc----ccHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 999886533322 12345778889999999877644 2344544443 44666553
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.013 Score=58.02 Aligned_cols=111 Identities=10% Similarity=-0.087 Sum_probs=68.4
Q ss_pred hcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc----CC-CeEEEEecCCCCCCC---CCC
Q 006834 215 LIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER----GV-PAMIGVISSKRLPYP---ARA 286 (629)
Q Consensus 215 lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er----g~-~~~~~v~d~~~Lp~p---d~s 286 (629)
.+...++. +|||+.+|.|.-+..|++.-.....++++|+++.-++..+++ |. ++.+...|...+... .+.
T Consensus 89 ~L~~~~g~--~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~ 166 (293)
T d2b9ea1 89 LLDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHE 166 (293)
T ss_dssp HHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTT
T ss_pred ccCCCccc--eEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccce
Confidence 34444444 899999999998888887522222567779998888777653 43 466666666555422 257
Q ss_pred eeEEEe----cC--cccc-----c----cc-C-------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 006834 287 FDMAHC----SG--CLIP-----W----YM-Y-------DGLYLLEVDRVLRPGGYWILSGPPIH 328 (629)
Q Consensus 287 FDlV~~----s~--~L~h-----~----~~-d-------~~~~L~el~RvLKPGG~liis~P~~~ 328 (629)
||.|++ +. ++-. | .. + ...++..+. .|+|||.++.++....
T Consensus 167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 999995 21 1100 1 00 0 012444444 4799999999986553
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.11 E-value=0.0012 Score=63.65 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=58.4
Q ss_pred CCeeEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCCcccceeecccccc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHASGVFS 553 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~~~~fs 553 (629)
.++++|+|+|||.|.++.+|+++ .+++.-+-++... .... -.+-.+-+|. |.+.|.. |..-..+++-
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-~~~~----~r~~~~~~d~---~~~~P~a-d~~~l~~vlh 150 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-APSY----PGVEHVGGDM---FVSIPKA-DAVFMKWICH 150 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT-CCCC----TTEEEEECCT---TTCCCCC-SCEECSSSST
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh-cccC----CceEEecccc---cccCCCc-ceEEEEEEee
Confidence 56889999999999999999875 4566655443322 1110 1123344444 4456732 2222222333
Q ss_pred ccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 554 IYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 554 ~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
.|.. -+...||.++-+.|+|||.++|-|.
T Consensus 151 ~~~d-~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 151 DWSD-EHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp TSCH-HHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred cCCH-HHHHHHHHHHHHhcCCCceEEEEEE
Confidence 3322 1334599999999999999999753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.11 E-value=0.0011 Score=66.78 Aligned_cols=104 Identities=15% Similarity=0.238 Sum_probs=62.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hcccceecccccc-------CCCCCccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGLIGTYQDWCEA-------FSTYPRTY 543 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgli~~~~~~~e~-------f~~yp~t~ 543 (629)
+.+|. +|||++||+|+|+.+++..+. -.|+.+|.++..+..+.+ -|+-...+-.++. +..-.++|
T Consensus 143 ~~~g~--~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 143 VQPGD--RVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CCTTC--EEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCC--eeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 44554 599999999999999987764 134444555456555433 3442222212221 11223689
Q ss_pred ceeecccc-ccccCC-----CcCHHHHHHHHhhcccCCcEEEEEe
Q 006834 544 DLIHASGV-FSIYQD-----RCDITNILLEMDRILRPEGTVIFRD 582 (629)
Q Consensus 544 Dl~H~~~~-fs~~~~-----~c~~~~~l~e~dRiLrPgG~~i~~d 582 (629)
|+|=++-- |+..+. ......++...-++|||||.+++..
T Consensus 219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99776443 222211 1234558899999999999999963
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.98 E-value=0.001 Score=63.40 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=57.2
Q ss_pred HHHHhhcccCCCCeeEEEeecccchhHHhhhhCC---CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--c
Q 006834 467 YYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY---PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP--R 541 (629)
Q Consensus 467 ~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~---~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp--~ 541 (629)
.+...+. +.++. +|||+|||+|-.+|-|+.. .|.++-+.+.-.. ...+.+.+.|+-.+.--.+..+..+| .
T Consensus 69 ~ml~~L~-l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~-~a~~~l~~~g~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 69 IMLEIAN-LKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVE-FAKRNLERAGVKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHT-CCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHH-HHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhhc-cCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHHHHH-HHHHHHHHcCCceeEEEECccccCCcccC
Confidence 3344443 66766 5999999999998877643 3554433321111 12222233454222222234556667 7
Q ss_pred ccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEE
Q 006834 542 TYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIF 580 (629)
Q Consensus 542 t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~ 580 (629)
.||.|++.+-.. .++.-|++ -|+|||.+|+
T Consensus 145 pfD~Iiv~~a~~------~ip~~l~~---qL~~gGrLv~ 174 (215)
T d1jg1a_ 145 PYDVIIVTAGAP------KIPEPLIE---QLKIGGKLII 174 (215)
T ss_dssp CEEEEEECSBBS------SCCHHHHH---TEEEEEEEEE
T ss_pred cceeEEeecccc------cCCHHHHH---hcCCCCEEEE
Confidence 899999844332 12333443 5999999987
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.022 Score=53.58 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchh--HHhhhhCCCeEEEEecCCCC-CCCchH-HHHhhcc--ccee
Q 006834 456 EDNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGG--FAAAMSKYPVWVMNVVPFHS-NPDTLG-AIYERGL--IGTY 529 (629)
Q Consensus 456 ~d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Gg--faa~l~~~~v~~mnv~~~~~-~~~~l~-~~~ergl--i~~~ 529 (629)
+....|.+|+-+-..+++.+..+ +|+|+|+|-|= .--|+...++-+ -++.... ....|. ++.+=|| +-++
T Consensus 45 ~~~~~~~rHi~DSl~~~~~~~~~---~ilDiGsGaG~PGi~laI~~p~~~~-~Lves~~KK~~FL~~~~~~L~L~nv~v~ 120 (207)
T d1jsxa_ 45 DPNEMLVRHILDSIVVAPYLQGE---RFIDVGTGPGLPGIPLSIVRPEAHF-TLLDSLGKRVRFLRQVQHELKLENIEPV 120 (207)
T ss_dssp ---CHHHHHHHHHHHHGGGCCSS---EEEEETCTTTTTHHHHHHHCTTSEE-EEEESCHHHHHHHHHHHHHTTCSSEEEE
T ss_pred CHHHHHHHHhcchHhhhhhhcCC---ceeeeeccCCceeeehhhhcccceE-EEEecchHHHHHHHHHHHHcCCcceeee
Confidence 34467888887666566655443 69999999773 233333333311 1222211 112333 3444466 4455
Q ss_pred ccccccCCCCCcccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCHHHHHHHHHHHhcCCCeEE
Q 006834 530 QDWCEAFSTYPRTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 530 ~~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 602 (629)
|+-.|.+.. ...||+|=| .+-+.+..++--.-+.|+|||.+++--.....++++.+- -.|+..
T Consensus 121 ~~R~E~~~~-~~~fD~V~s-------RA~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~~ 183 (207)
T d1jsxa_ 121 QSRVEEFPS-EPPFDGVIS-------RAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQVE 183 (207)
T ss_dssp ECCTTTSCC-CSCEEEEEC-------SCSSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEEE
T ss_pred ccchhhhcc-ccccceehh-------hhhcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEEE
Confidence 544443321 158998876 334667888888899999999999975544445555443 366543
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.63 E-value=0.0011 Score=63.63 Aligned_cols=92 Identities=16% Similarity=0.282 Sum_probs=54.9
Q ss_pred ccCCCCeeEEEeecccchhHHhhhhCC----Ce----EEEEecCCCCCCCchHHHHhh---------cc--cceeccccc
Q 006834 474 LFHKGRYRNVMDMNAYLGGFAAAMSKY----PV----WVMNVVPFHSNPDTLGAIYER---------GL--IGTYQDWCE 534 (629)
Q Consensus 474 ~~~~~~~R~vlD~~~g~Ggfaa~l~~~----~v----~~mnv~~~~~~~~~l~~~~er---------gl--i~~~~~~~e 534 (629)
.+.++. +|||+|||+|-++|.|.+. ++ -|.. ++..+..+..+.++ |+ +-+.+ +.
T Consensus 77 ~l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~---iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~--~d 149 (223)
T d1r18a_ 77 HLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVG---IEHQAELVRRSKANLNTDDRSMLDSGQLLIVE--GD 149 (223)
T ss_dssp TCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEE---EESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE--SC
T ss_pred ccCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEE---EecCHHHHHHHHHhhhhcchhhcCccEEEEEe--cc
Confidence 466665 4999999999998888643 21 2222 33333455555432 22 22333 23
Q ss_pred cCCCCC--cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 535 AFSTYP--RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 535 ~f~~yp--~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
....+| ..||.|++.+... .+-..+-+.|+|||.+|+-
T Consensus 150 ~~~~~~~~~~fD~Iiv~~a~~---------~~p~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 150 GRKGYPPNAPYNAIHVGAAAP---------DTPTELINQLASGGRLIVP 189 (223)
T ss_dssp GGGCCGGGCSEEEEEECSCBS---------SCCHHHHHTEEEEEEEEEE
T ss_pred cccccccccceeeEEEEeech---------hchHHHHHhcCCCcEEEEE
Confidence 344455 6899999855433 2222345799999999883
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0047 Score=56.98 Aligned_cols=138 Identities=15% Similarity=0.179 Sum_probs=74.8
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCC-CCcccceeec
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFST-YPRTYDLIHA 548 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~-yp~t~Dl~H~ 548 (629)
+.++. +|||+||+-|||.-++.++ .|+..-+.|.+.- +. ...-.|-++.....-..... ....+|+|=|
T Consensus 20 ~k~~~--~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i-~~--~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlS 94 (180)
T d1ej0a_ 20 FKPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI-VG--VDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CCTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-TT--EEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCC--eEEEEeccCCcceEEEEeeccccceEEEeeccccccc-CC--ceEeecccccchhhhhhhhhccCcceeEEEe
Confidence 44443 6999999999999987653 2444444444321 11 11112222211100011111 2256999999
Q ss_pred cccccccCCCcC--------HHHHHHHHhhcccCCcEEEEE-----eCHHHHHHHHHHHhcCCCeEEEeecC-CCCCCCc
Q 006834 549 SGVFSIYQDRCD--------ITNILLEMDRILRPEGTVIFR-----DTVEMLVKIRSITEGMRWKSQIMDHE-SGPFNPE 614 (629)
Q Consensus 549 ~~~fs~~~~~c~--------~~~~l~e~dRiLrPgG~~i~~-----d~~~~~~~~~~~~~~l~w~~~~~~~e-~~~~~~e 614 (629)
++-+.....+-. ....|.=+.++|||||.||+- +..+.+..++...+. +.++-.+ +-+...|
T Consensus 95 D~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~----V~~~KP~aSR~~SsE 170 (180)
T d1ej0a_ 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK----VKVRKPDSSRARSRE 170 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEE----EEEECCTTSCTTCCE
T ss_pred cccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCE----EEEECCCCcccCCce
Confidence 988875443311 111333346999999999994 333344444444433 3344332 3455789
Q ss_pred eEEEEEe
Q 006834 615 KILFAAK 621 (629)
Q Consensus 615 ~~l~~~K 621 (629)
.-|||+.
T Consensus 171 ~Ylv~~g 177 (180)
T d1ej0a_ 171 VYIVATG 177 (180)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999974
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=95.14 E-value=0.022 Score=56.77 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh------cc----
Q 006834 457 DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER------GL---- 525 (629)
Q Consensus 457 d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er------gl---- 525 (629)
|...+...+.+..- +.....++||.+|+|.|+.++.+.+. ++--+-++..|. ..++++.+. |.
T Consensus 59 de~~Yhe~l~h~~l----~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~--~Vi~~a~~~f~~~~~~~~~d~ 132 (312)
T d1uira_ 59 DEYIYHETLVHPAM----LTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDG--ELVEVAKRHMPEWHQGAFDDP 132 (312)
T ss_dssp THHHHHHHHHHHHH----HHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCH--HHHHHHHHHCHHHHTTGGGCT
T ss_pred cHHHHHHHHhhhhh----hhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCH--HHHHHHHhcCcccccCccCCC
Confidence 33445544444322 22345788999999999999998776 453333444443 455555432 11
Q ss_pred -cceec-cccccCCCCCcccceeecccc--ccccCCCcCH--HHHHHHHhhcccCCcEEEEE------eCHHHHHHHHHH
Q 006834 526 -IGTYQ-DWCEAFSTYPRTYDLIHASGV--FSIYQDRCDI--TNILLEMDRILRPEGTVIFR------DTVEMLVKIRSI 593 (629)
Q Consensus 526 -i~~~~-~~~e~f~~yp~t~Dl~H~~~~--fs~~~~~c~~--~~~l~e~dRiLrPgG~~i~~------d~~~~~~~~~~~ 593 (629)
+.+++ |+-+-+...++.||+|-.+.. +........+ ..++..+.|.|+|||.++.. ...++...|.+.
T Consensus 133 rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~t 212 (312)
T d1uira_ 133 RAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRT 212 (312)
T ss_dssp TEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHH
T ss_pred ceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHH
Confidence 12222 333333456788999886431 2111111111 46888999999999999884 123345666555
Q ss_pred HhcCCCeEEEeecC-CCCCCCceEEEEEec
Q 006834 594 TEGMRWKSQIMDHE-SGPFNPEKILFAAKT 622 (629)
Q Consensus 594 ~~~l~w~~~~~~~e-~~~~~~e~~l~~~K~ 622 (629)
++..=..+..+-.- ..-.....+++|.|.
T Consensus 213 l~~~F~~V~~y~~~vPs~~~~w~f~~aS~~ 242 (312)
T d1uira_ 213 VREAFRYVRSYKNHIPGFFLNFGFLLASDA 242 (312)
T ss_dssp HHTTCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred HHHhCceEEEEEeeeCCcCCCCEeEEEeCC
Confidence 55444444433210 000012457777775
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.02 E-value=0.04 Score=49.02 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=65.9
Q ss_pred CccCCCCCeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC--------C-CCCC
Q 006834 217 PLTGGNIRTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL--------P-YPAR 285 (629)
Q Consensus 217 ~~~~g~~~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L--------p-~pd~ 285 (629)
...+++ +||-+||| .|.++..+++. |. .++.+|.+++-++.|++.+....+.......- . ...+
T Consensus 23 ~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga---~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 23 GVQLGT--TVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCC--EEEEEcccccchhhHhhHhhhcc---cccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccccc
Confidence 344444 89999998 67777777764 44 45667999999999999886655432211110 0 1135
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
.+|+|+-.- .....+....++|+|||.+++.+.
T Consensus 98 g~D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 98 LPNVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CCSEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 689988432 224578888999999999999863
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=94.80 E-value=0.012 Score=56.53 Aligned_cols=91 Identities=16% Similarity=0.228 Sum_probs=60.7
Q ss_pred CCeeEEEeecccchhHHhhhhCC----CeEEEEecCCCCCCCchHHHHhhcc---cce-eccccccCCCCCcccceeecc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSKY----PVWVMNVVPFHSNPDTLGAIYERGL---IGT-YQDWCEAFSTYPRTYDLIHAS 549 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~~----~v~~mnv~~~~~~~~~l~~~~ergl---i~~-~~~~~e~f~~yp~t~Dl~H~~ 549 (629)
.++++|+|+|+|.|.++.+++++ .+.+...-+ ++-+.+. |.. -+| .|.+-| .+|++...
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---------vi~~~~~~~rv~~~~gD---~f~~~p-~aD~~~l~ 145 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ---------VVENLSGSNNLTYVGGD---MFTSIP-NADAVLLK 145 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH---------HHTTCCCBTTEEEEECC---TTTCCC-CCSEEEEE
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH---------HHHhCcccCceEEEecC---cccCCC-CCcEEEEE
Confidence 56788999999999999999765 345555422 2222222 222 222 234444 67998888
Q ss_pred ccccccCCCcCHHHHHHHHhhcccCC---cEEEEEe
Q 006834 550 GVFSIYQDRCDITNILLEMDRILRPE---GTVIFRD 582 (629)
Q Consensus 550 ~~fs~~~~~c~~~~~l~e~dRiLrPg---G~~i~~d 582 (629)
+++-.|.+. +...||..+-+.|+|| |.++|-|
T Consensus 146 ~vLHdw~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 146 YILHNWTDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred eecccCChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 887776543 3346899999999999 6677764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.66 E-value=0.0054 Score=56.91 Aligned_cols=42 Identities=19% Similarity=0.410 Sum_probs=34.9
Q ss_pred cccceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeC
Q 006834 541 RTYDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDT 583 (629)
Q Consensus 541 ~t~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~ 583 (629)
+.||+|=|-+||..... -....++..+.+.|+|||++++...
T Consensus 131 ~~fDvI~CRNVLiYf~~-~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 131 GPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp CCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred CCccEEEeehhHHhcCH-HHHHHHHHHHHHHhCCCcEEEEecC
Confidence 78999999999876543 3456799999999999999999744
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.39 E-value=0.037 Score=49.97 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=66.8
Q ss_pred HHHhhcCccCCCCCeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCC------CC-C
Q 006834 211 NINELIPLTGGNIRTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSK------RL-P 281 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~------~L-p 281 (629)
.+.+.....+++ +||-+|+| .|.++..+++. |.. .++.+|.+++.++.|++.|....+...+.. .+ .
T Consensus 19 al~~~~~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~ 94 (182)
T d1vj0a2 19 AFDEYPESFAGK--TVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMD 94 (182)
T ss_dssp HHHTCSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHH
T ss_pred HHHHHhCCCCCC--EEEEECCCccchhheecccccccc--cccccccccccccccccccceEEEeccccchHHHHHHHHH
Confidence 344444444555 89999998 47777777765 442 456679999999999998865433221110 00 0
Q ss_pred -CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 282 -YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 -~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.....+|+|+-.-.- ...+....++|+|||.+++.+
T Consensus 95 ~~~~~g~Dvvid~vG~-------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 95 ITHGRGADFILEATGD-------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HTTTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred hhCCCCceEEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence 123469999843211 235788899999999998875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.30 E-value=0.0074 Score=54.30 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=63.4
Q ss_pred CccCCCCCeEEEeCCC-CchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC-CCCCCCeeEEEec
Q 006834 217 PLTGGNIRTAVDTGCG-VASWGAYLLK-RDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL-PYPARAFDMAHCS 293 (629)
Q Consensus 217 ~~~~g~~~~VLDIGCG-tG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L-p~pd~sFDlV~~s 293 (629)
...+++ +||-+|+| .|.++..+++ .|..+ +.+|.+++.++.|++.|....+...+.... .-..+.||+|+..
T Consensus 24 ~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~~v---i~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 24 GCGPGK--KVGIVGLGGIGSMGTLISKAMGAET---YVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TCSTTC--EEEEECCSHHHHHHHHHHHHHTCEE---EEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CcCCCC--EEEEECCCCcchhHHHHhhhccccc---cccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 444455 89999998 6787777775 46544 455999999999999886544332221111 1124679988853
Q ss_pred CcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 294 GCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 294 ~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
-.-.+- ..+....++|+|||.+++.+
T Consensus 99 ~~~~~~-----~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 99 ASSLTD-----IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CSCSTT-----CCTTTGGGGEEEEEEEEECC
T ss_pred ecCCcc-----chHHHHHHHhhccceEEEec
Confidence 221111 12456789999999999975
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=94.28 E-value=0.007 Score=55.05 Aligned_cols=100 Identities=12% Similarity=0.193 Sum_probs=58.5
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHh----hccc-ceeccccccCCC---CC-cccce
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYE----RGLI-GTYQDWCEAFST---YP-RTYDL 545 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~e----rgli-~~~~~~~e~f~~---yp-~t~Dl 545 (629)
+..+. .|||++||+|++|.+.++++.-|. -+|..+..++.+.+ -|+- .+...-+..|.. .+ ..||+
T Consensus 39 ~~~g~--~vLDl~~G~G~~~i~a~~~ga~vv---~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~ 113 (171)
T d1ws6a1 39 YPRRG--RFLDPFAGSGAVGLEAASEGWEAV---LVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp CTTCC--EEEEETCSSCHHHHHHHHTTCEEE---EECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred ccCCC--eEEEeccccchhhhhhhhccchhh---hcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccce
Confidence 44554 599999999999998888886433 34655456655422 2331 122222233221 22 57999
Q ss_pred eeccccccccCCCcCHHHHHHHH--hhcccCCcEEEEEeCH
Q 006834 546 IHASGVFSIYQDRCDITNILLEM--DRILRPEGTVIFRDTV 584 (629)
Q Consensus 546 ~H~~~~fs~~~~~c~~~~~l~e~--dRiLrPgG~~i~~d~~ 584 (629)
|=++==|.. +...++.++ -.+|+|||.+|+..+.
T Consensus 114 If~DPPY~~-----~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 114 AFMAPPYAM-----DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp EEECCCTTS-----CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred eEEcccccc-----CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 866432221 233444444 2589999999996543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.12 Score=45.99 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=65.1
Q ss_pred HHhhcCccCCCCCeEEEeCC--CCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC-------
Q 006834 212 INELIPLTGGNIRTAVDTGC--GVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP------- 281 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGC--GtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp------- 281 (629)
+.+.....+++ +||-.|+ |.|..+..+++. |..+ ++++.+++..+.+++.|....+ +.....
T Consensus 20 l~~~~~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~~v---i~~~~~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~ 91 (174)
T d1yb5a2 20 LIHSACVKAGE--SVLVHGASGGVGLAACQIARAYGLKI---LGTAGTEEGQKIVLQNGAHEVF---NHREVNYIDKIKK 91 (174)
T ss_dssp HHTTSCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTCSEEE---ETTSTTHHHHHHH
T ss_pred HHHHhCCCCCC--EEEEEeccccccccccccccccCccc---ccccccccccccccccCccccc---ccccccHHHHhhh
Confidence 33444444455 8999996 467777777764 5544 4447788889999988865433 222211
Q ss_pred -CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 282 -YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 -~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...+.||+|+... ....+.+..++|+|||.++..+
T Consensus 92 ~t~~~g~d~v~d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 92 YVGEKGIDIIIEML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HHCTTCEEEEEESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred hhccCCceEEeecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 2346799999643 2346888899999999999875
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=93.48 E-value=0.056 Score=51.30 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=72.8
Q ss_pred CCeeEEEeecccchhHHhhhhC---CC--eEEEEecCCCCCCCchHHHHhhcc---cceec-cccccCCC------CCcc
Q 006834 478 GRYRNVMDMNAYLGGFAAAMSK---YP--VWVMNVVPFHSNPDTLGAIYERGL---IGTYQ-DWCEAFST------YPRT 542 (629)
Q Consensus 478 ~~~R~vlD~~~g~Ggfaa~l~~---~~--v~~mnv~~~~~~~~~l~~~~ergl---i~~~~-~~~e~f~~------yp~t 542 (629)
.+.++||.+|+++|--+.+|++ .+ |+++-..|.... -..+.+.+-|+ |-+.+ +..+.++. .+.+
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~-~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYE-LGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHH-HHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHH-HHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 3467899999999977777652 22 333222221111 12223333465 33333 22222222 2468
Q ss_pred cceeeccccccccCCCcCHHHHHHHHhhcccCCcEEEEEeCH--------------H----HHHHHHH----HHhcCCCe
Q 006834 543 YDLIHASGVFSIYQDRCDITNILLEMDRILRPEGTVIFRDTV--------------E----MLVKIRS----ITEGMRWK 600 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~~~c~~~~~l~e~dRiLrPgG~~i~~d~~--------------~----~~~~~~~----~~~~l~w~ 600 (629)
||+|=.++ +.-.....+...-+.|||||.+|+-+-. . ....|++ +...=+|+
T Consensus 137 fD~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~ 210 (227)
T d1susa1 137 YDFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIE 210 (227)
T ss_dssp BSEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBC
T ss_pred eeEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99966532 3344566777777999999999986321 1 1222333 34445688
Q ss_pred EEEeecCCCCCCCceEEEEEe
Q 006834 601 SQIMDHESGPFNPEKILFAAK 621 (629)
Q Consensus 601 ~~~~~~e~~~~~~e~~l~~~K 621 (629)
+.+.-. .+.|+||+|
T Consensus 211 ~~llPi------gDGl~i~~K 225 (227)
T d1susa1 211 ICMLPV------GDGITICRR 225 (227)
T ss_dssp CEEECS------TTCEEEECB
T ss_pred EEEeec------CCeeEEEEE
Confidence 777644 356999988
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=93.25 E-value=0.069 Score=52.75 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=80.2
Q ss_pred CCCCeeEEEeecccchhHHhhhh----CCCeEEEEecCCCCCCCchHHHHhh----cc-cceeccccccCCCCC-cccce
Q 006834 476 HKGRYRNVMDMNAYLGGFAAAMS----KYPVWVMNVVPFHSNPDTLGAIYER----GL-IGTYQDWCEAFSTYP-RTYDL 545 (629)
Q Consensus 476 ~~~~~R~vlD~~~g~Ggfaa~l~----~~~v~~mnv~~~~~~~~~l~~~~er----gl-i~~~~~~~e~f~~yp-~t~Dl 545 (629)
....-.+|+|.+||.|+|..++. ++.-.-.++..+|-.+.++.++... |. ...++ ...+...+ ..||+
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~ 191 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDV 191 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEE
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc--cccccccccccccc
Confidence 34455689999999999987764 3333344666666654555544322 22 22222 12334444 78999
Q ss_pred eeccccccccC--------------CCcCHHHH-HHHHhhcccCCcEEEE--EeCH---HHHHHHHHHHhcCCCeEEEee
Q 006834 546 IHASGVFSIYQ--------------DRCDITNI-LLEMDRILRPEGTVIF--RDTV---EMLVKIRSITEGMRWKSQIMD 605 (629)
Q Consensus 546 ~H~~~~fs~~~--------------~~c~~~~~-l~e~dRiLrPgG~~i~--~d~~---~~~~~~~~~~~~l~w~~~~~~ 605 (629)
|=++-=|+... ..-++..+ +..+-+.|+|||.+++ .+.. ..-..+++.+-.-.+-..+++
T Consensus 192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~ 271 (328)
T d2f8la1 192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIK 271 (328)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEE
T ss_pred cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEE
Confidence 88876664221 11223443 5557899999997655 2221 124456665444344333444
Q ss_pred cCC----CCCCCceEEEEEec
Q 006834 606 HES----GPFNPEKILFAAKT 622 (629)
Q Consensus 606 ~e~----~~~~~e~~l~~~K~ 622 (629)
... +...+--|||.+|+
T Consensus 272 lp~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 272 LPETLFKSEQARKSILILEKA 292 (328)
T ss_dssp CCGGGSCC-CCCEEEEEEEEC
T ss_pred CCccccCCCCCCeEEEEEECC
Confidence 322 23345678888885
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.61 E-value=0.015 Score=53.68 Aligned_cols=131 Identities=15% Similarity=0.194 Sum_probs=65.9
Q ss_pred eEEEeecccchhHHhhhhCC-----CeEEEEecCCCCCCCchHHHHhhcccceeccccccCCCCC--cccceeecccccc
Q 006834 481 RNVMDMNAYLGGFAAAMSKY-----PVWVMNVVPFHSNPDTLGAIYERGLIGTYQDWCEAFSTYP--RTYDLIHASGVFS 553 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~-----~v~~mnv~~~~~~~~~l~~~~ergli~~~~~~~e~f~~yp--~t~Dl~H~~~~fs 553 (629)
.+|||.+||.|+|..++.++ .+...-+-+. .+... +.. .++ +..+...+ ..||++.++--|.
T Consensus 21 ~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~-----~~~~~--~~~-~~~---~~~~~~~~~~~~fd~ii~npP~~ 89 (223)
T d2ih2a1 21 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK-----ALDLP--PWA-EGI---LADFLLWEPGEAFDLILGNPPYG 89 (223)
T ss_dssp CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT-----TCCCC--TTE-EEE---ESCGGGCCCSSCEEEEEECCCCC
T ss_pred CEEEECCCchHHHHHHHHHhccccceEEeeecCHH-----HHhhc--ccc-eee---eeehhccccccccceecccCccc
Confidence 37999999999998887643 1222222222 11111 000 111 22222222 7899988876664
Q ss_pred ccC-------------------------CCcCHHH-HHHHHhhcccCCcEEEEEeCH-----HHHHHHHH-HHhcCCCeE
Q 006834 554 IYQ-------------------------DRCDITN-ILLEMDRILRPEGTVIFRDTV-----EMLVKIRS-ITEGMRWKS 601 (629)
Q Consensus 554 ~~~-------------------------~~c~~~~-~l~e~dRiLrPgG~~i~~d~~-----~~~~~~~~-~~~~l~w~~ 601 (629)
... ...++.. ++..+-+.|+|||++.+=-+. ..-..+++ +++....++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~i 169 (223)
T d2ih2a1 90 IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSV 169 (223)
T ss_dssp CBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEE
T ss_pred cccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCEEE
Confidence 321 2233333 445577999999997663111 11234433 355544443
Q ss_pred EEeec-CCCCCCCceEEEEEec
Q 006834 602 QIMDH-ESGPFNPEKILFAAKT 622 (629)
Q Consensus 602 ~~~~~-e~~~~~~e~~l~~~K~ 622 (629)
..... =.+...+--||+.+|+
T Consensus 170 ~~~~~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 170 YYLGEVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp EEEESCSTTCCCCEEEEEEESS
T ss_pred EcchhcCCCCCCcEEEEEEEeC
Confidence 22110 0123345667777763
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.40 E-value=0.0085 Score=55.77 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=70.7
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcc-----cceeccccccC----CCCC-ccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGL-----IGTYQDWCEAF----STYP-RTY 543 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergl-----i~~~~~~~e~f----~~yp-~t~ 543 (629)
+.++. +++|++||+||++.+++++ +- ..|+..|..+.++..+.+|-= +-.+|.+-..+ ..++ ..+
T Consensus 21 ~~~~~--~~lD~t~G~Gghs~~il~~~~~--~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~v 96 (192)
T d1m6ya2 21 PEDEK--IILDCTVGEGGHSRAILEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKV 96 (192)
T ss_dssp CCTTC--EEEETTCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred CCCCC--EEEEecCCCcHHHHHHHhcCCC--CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCc
Confidence 34554 5999999999999999875 32 356777777788888887632 33444222111 1233 566
Q ss_pred ceeeccccccccC----CC--cCHHHHHHHHhhcccCCcEEEEEeCHH-HHHHHHHHHhc
Q 006834 544 DLIHASGVFSIYQ----DR--CDITNILLEMDRILRPEGTVIFRDTVE-MLVKIRSITEG 596 (629)
Q Consensus 544 Dl~H~~~~fs~~~----~~--c~~~~~l~e~dRiLrPgG~~i~~d~~~-~~~~~~~~~~~ 596 (629)
|-|-.+-=.|.++ .| ..+...|.++-++|+|||.+++-.-.. ....++++++.
T Consensus 97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 97 DGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp EEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 6554331112211 11 223458888899999999998754332 23445666553
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.38 E-value=0.15 Score=45.74 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=65.7
Q ss_pred hhcCccCCCCCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC-----C-CCCC
Q 006834 214 ELIPLTGGNIRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL-----P-YPAR 285 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L-----p-~pd~ 285 (629)
+.....+++ +||=+|||. |.++..+++. |.. .++.+|.+++-++.|++.|....+...+ ..+ . ....
T Consensus 21 ~~a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 21 ELADIEMGS--SVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRPICVEAAKFYGATDILNYKN-GHIEDQVMKLTNGK 95 (174)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCHHHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTS
T ss_pred HHhCCCCCC--EEEEEcCCcchhhhhhhhhccccc--ccccccchhhhHHHHHhhCccccccccc-hhHHHHHHHHhhcc
Confidence 344555555 788899995 7888888875 332 3456699999999999988543332111 111 0 1234
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.||+|+-.-.- ...+.+..++|||||.+++.+
T Consensus 96 G~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 96 GVDRVIMAGGG-------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp CEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred CcceEEEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 59999853321 245788889999999999975
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.30 E-value=0.047 Score=54.31 Aligned_cols=119 Identities=20% Similarity=0.215 Sum_probs=67.7
Q ss_pred eEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cccceeccc-cc-cCC------CCCcccceeec
Q 006834 481 RNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GLIGTYQDW-CE-AFS------TYPRTYDLIHA 548 (629)
Q Consensus 481 R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gli~~~~~~-~e-~f~------~yp~t~Dl~H~ 548 (629)
+.|||+.||+|+|+.+++..+-- |+.+|.+...+..+.+- |+-..-|.+ |+ .|. .-.+.||+|=+
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 36999999999999999988753 44557776676666542 442212222 22 111 12368998765
Q ss_pred ccc-ccccCC------CcCHHHHHHHHhhcccCCcEEEEE-------eCHHHHHHHHHHHhcCCCeEE
Q 006834 549 SGV-FSIYQD------RCDITNILLEMDRILRPEGTVIFR-------DTVEMLVKIRSITEGMRWKSQ 602 (629)
Q Consensus 549 ~~~-fs~~~~------~c~~~~~l~e~dRiLrPgG~~i~~-------d~~~~~~~~~~~~~~l~w~~~ 602 (629)
+== |+.... +-.+..++..+-++|+|||.+++. +......-+++.+......+.
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 422 322111 112233555677899999975553 122233445555655566654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.82 E-value=0.27 Score=44.89 Aligned_cols=104 Identities=17% Similarity=0.035 Sum_probs=68.6
Q ss_pred hhcCccCCCCCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCC--------C
Q 006834 214 ELIPLTGGNIRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPY--------P 283 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~--------p 283 (629)
+.....+++ +||-+|||. |..+..+++. +.. .++.+|.+++-++.|++.|....+ +....++ .
T Consensus 19 ~~a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~ 91 (195)
T d1kola2 19 VTAGVGPGS--TVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALLG 91 (195)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHS
T ss_pred HHhCCCCCC--EEEEECcCHHHHHHHHHHHhhccc--ceeeecccchhhHhhhhccccEEE---eCCCcCHHHHHHHHhC
Confidence 344555555 999999997 6677777754 443 456679999999999999854322 2211111 2
Q ss_pred CCCeeEEEecCcc------ccc--ccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 284 ARAFDMAHCSGCL------IPW--YMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 284 d~sFDlV~~s~~L------~h~--~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
...+|+++-.-.. ++. .......|....+++||||.+++.+
T Consensus 92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 3468999953221 011 1123568999999999999999985
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.075 Score=48.38 Aligned_cols=94 Identities=9% Similarity=0.037 Sum_probs=55.1
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHH---Hhhcccc---eec-cccccCCCCCcccceeeccccccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAI---YERGLIG---TYQ-DWCEAFSTYPRTYDLIHASGVFSI 554 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~---~ergli~---~~~-~~~e~f~~yp~t~Dl~H~~~~fs~ 554 (629)
+|||+.||+|++|-..++++.. .|+-+|.....+..+ .+..-+. ++. |..+-+......||+|-++-=|.
T Consensus 46 ~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~- 122 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR- 122 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-
T ss_pred hhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc-
Confidence 5999999999999888888763 223334443444433 3332222 222 21122222337899998865443
Q ss_pred cCCCcCHHHHHHHHh--hcccCCcEEEEE
Q 006834 555 YQDRCDITNILLEMD--RILRPEGTVIFR 581 (629)
Q Consensus 555 ~~~~c~~~~~l~e~d--RiLrPgG~~i~~ 581 (629)
....+.+|.-+. .+|+|+|.+|+-
T Consensus 123 ---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 123 ---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 234455444443 589999999994
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.47 E-value=0.17 Score=45.24 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=65.8
Q ss_pred HHhhcCccCCCCCeEEEeCCCC-chHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC-----CCCC
Q 006834 212 INELIPLTGGNIRTAVDTGCGV-ASWGAYLLK-RDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL-----PYPA 284 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGCGt-G~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L-----p~pd 284 (629)
+.+.....+++ +||=+|||. |..+..+++ .+... +...|.++.-++.|++.|....+.. +.... .+.+
T Consensus 20 ~~~~~~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~--v~~~~~~~~k~~~a~~~Ga~~~i~~-~~~~~~~~i~~~t~ 94 (174)
T d1f8fa2 20 CINALKVTPAS--SFVTWGAGAVGLSALLAAKVCGASI--IIAVDIVESRLELAKQLGATHVINS-KTQDPVAAIKEITD 94 (174)
T ss_dssp HHTTTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSE--EEEEESCHHHHHHHHHHTCSEEEET-TTSCHHHHHHHHTT
T ss_pred HHHhhCCCCCC--EEEEeCCCHHHhhhhhcccccccce--eeeeccHHHHHHHHHHcCCeEEEeC-CCcCHHHHHHHHcC
Confidence 33444455555 899999984 455666654 35543 4556999999999999886433321 11111 1234
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+.||+|+-.- .....+.+..++|+|+|.+++.+
T Consensus 95 gg~D~vid~~-------G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 95 GGVNFALEST-------GSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp SCEEEEEECS-------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCcEEEEcC-------CcHHHHHHHHhcccCceEEEEEe
Confidence 6799998422 12457888999999999999975
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.23 Score=43.90 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=64.5
Q ss_pred CccCCCCCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCC------CC-CCCCCe
Q 006834 217 PLTGGNIRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR------LP-YPARAF 287 (629)
Q Consensus 217 ~~~~g~~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~------Lp-~pd~sF 287 (629)
...+++ +||=+|||. |.++..+++. |.. .++.+|.++.-++.|++.|....+...+... +. .....+
T Consensus 23 ~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 23 GVTLGH--KVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCCCC--EEEEECCCccHHHHHHHHHHcCCc--eEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence 344444 899999985 5666666654 543 4566799999999999988654433211100 00 012468
Q ss_pred eEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 288 DMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 288 DlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
|+|+..-. ....+....+.+++||.+++.+-
T Consensus 99 Dvvid~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 99 EVTIECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SEEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred eEEEeccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 99885332 24578899999999999999863
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.26 E-value=0.34 Score=46.90 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=59.3
Q ss_pred CCCeeEEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh-----cc-----------cceec-cccccCCCC
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER-----GL-----------IGTYQ-DWCEAFSTY 539 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er-----gl-----------i~~~~-~~~e~f~~y 539 (629)
..+-++||-+|+|.|+.+.++.+.+.--+-+|..|. ..++++.+- |. +-+++ |--+-..+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~--~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~- 146 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE--DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 146 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH--HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCH--HHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-
Confidence 455678999999999999998887753334566654 355555321 10 01111 10000011
Q ss_pred CcccceeeccccccccCCC--cCHHHHHHHHhhcccCCcEEEEE
Q 006834 540 PRTYDLIHASGVFSIYQDR--CDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 540 p~t~Dl~H~~~~fs~~~~~--c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
.++||+|-.+. |.-.... ---...+..+.|.|+|||.++..
T Consensus 147 ~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 147 NRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 36899987643 3321111 11146789999999999999884
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.01 E-value=0.2 Score=44.23 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=63.1
Q ss_pred hcCccCCCCCeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEe
Q 006834 215 LIPLTGGNIRTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHC 292 (629)
Q Consensus 215 lL~~~~g~~~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~ 292 (629)
.....+++ +||=+|+| .|.++..+++. |..++ .+|.+++-++.+++.|....+...+........+.+|+++-
T Consensus 25 ~~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga~~i---~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 25 HWQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVV---AFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEE---EEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred HhCCCCCC--EEEEeccchHHHHHHHHhhcccccch---hhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeee
Confidence 34455555 88889987 47777777764 55443 45778888889988886544322111111122457999885
Q ss_pred cCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 293 SGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 293 s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.-.- ...+....++|+|||.+++.+
T Consensus 100 ~~g~-------~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 100 TVAA-------PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp CCSS-------CCCHHHHHTTEEEEEEEEECC
T ss_pred eeec-------chhHHHHHHHHhcCCEEEEec
Confidence 3321 123667789999999999975
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.86 E-value=0.16 Score=44.62 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=61.0
Q ss_pred cCccCCCCCeEEEeCCC-CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCC---C-CCCCCCeeE
Q 006834 216 IPLTGGNIRTAVDTGCG-VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKR---L-PYPARAFDM 289 (629)
Q Consensus 216 L~~~~g~~~~VLDIGCG-tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~---L-p~pd~sFDl 289 (629)
....+++ +||=+|+| .|..+..+++. |. .+..+|.+++.++.+++.|....+...+... + ....+.+|.
T Consensus 23 ~~~~~g~--~VlV~GaG~vG~~~~~~ak~~G~---~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 23 TNARPGQ--WVAISGIGGLGHVAVQYARAMGL---HVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred hCCCCCC--EEEEeeccccHHHHHHHHHHcCC---ccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccc
Confidence 3444555 88889998 46777777765 44 4566699999999999988654332111100 0 011233455
Q ss_pred EEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 290 AHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 290 V~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
|.+.. ....+....++|+|||.+++.+
T Consensus 98 i~~~~--------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 98 LVTAV--------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp EECCS--------CHHHHHHHHTTEEEEEEEEECC
T ss_pred ccccc--------cchHHHHHHHHhcCCcEEEEEE
Confidence 55432 1346788899999999999976
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=89.85 E-value=0.73 Score=46.25 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=33.4
Q ss_pred CCCCCCeeEEEecCcccccccC-H--------------------------------HHHHHHHHhcccCCcEEEEEeC
Q 006834 281 PYPARAFDMAHCSGCLIPWYMY-D--------------------------------GLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 281 p~pd~sFDlV~~s~~L~h~~~d-~--------------------------------~~~L~el~RvLKPGG~liis~P 325 (629)
-||+++.|+++|+.++ ||... | ..+|+.=.+-|+|||.++++..
T Consensus 134 LfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 134 LFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred cCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 3789999999999999 67421 1 0356666677999999999864
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.38 Score=47.55 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcCccC----CCCCeEEEeCCCCchHHHHHHHcC-CcEeEEEeecCcHHHHHHHHHcC--CCeEEEEecCC
Q 006834 206 DAYIDNINELIPLTG----GNIRTAVDTGCGVASWGAYLLKRD-ILTMSFARRDTHEAQVQFALERG--VPAMIGVISSK 278 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~----g~~~~VLDIGCGtG~~a~~La~~g-~~~v~i~gvDiS~~~i~~A~erg--~~~~~~v~d~~ 278 (629)
...++.|.+.+...+ ....+|||||.|.|.++..|++.+ +. .++++|.++..++..+++. .++.+...|..
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~--~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l 100 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR--QYSLLEKRSSLYKFLNAKFEGSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCS--EEEEECCCHHHHHHHHHHTTTSSCEEECSCTT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHhccCCCcEEEeCchh
Confidence 556777777665421 234589999999999999999863 32 3456699999999887753 35666666654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=89.08 E-value=0.7 Score=44.12 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=60.0
Q ss_pred cCCCCeeEEEeecccchhHHhhhhCC-CeEEEEec----CCCCCC-CchHHHHhhcccceeccccccCCCCCcccceeec
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVV----PFHSNP-DTLGAIYERGLIGTYQDWCEAFSTYPRTYDLIHA 548 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~----~~~~~~-~~l~~~~ergli~~~~~~~e~f~~yp~t~Dl~H~ 548 (629)
+.++. +|+|+|||-||+.-+++++ +| +.|. ..+.++ ......+..+++...- =-.-|..-|.-.|+|-|
T Consensus 64 ~~~~~--~vvDlG~~pGgws~~~a~~~~v--~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~-~~dv~~l~~~~~D~vlc 138 (257)
T d2p41a1 64 VTPEG--KVVDLGCGRGGWSYYCGGLKNV--REVKGLTKGGPGHEEPIPMSTYGWNLVRLQS-GVDVFFIPPERCDTLLC 138 (257)
T ss_dssp SCCCE--EEEEETCTTSHHHHHHHTSTTE--EEEEEECCCSTTSCCCCCCCSTTGGGEEEEC-SCCTTTSCCCCCSEEEE
T ss_pred ccCCC--eEEEecCCCChHHHHHHhhcCC--CceeEEEecCccccCCccccccccccccchh-hhhHHhcCCCcCCEEEe
Confidence 44444 4899999999999999876 34 2222 222211 1222223334433211 00112223477888887
Q ss_pred cccccccCCCcCHH-----HHHHHHhhcccCCcEEEEE--e--CHHHHHHHHHHHh
Q 006834 549 SGVFSIYQDRCDIT-----NILLEMDRILRPEGTVIFR--D--TVEMLVKIRSITE 595 (629)
Q Consensus 549 ~~~fs~~~~~c~~~-----~~l~e~dRiLrPgG~~i~~--d--~~~~~~~~~~~~~ 595 (629)
+-.=|. ..-.++ .+|.=+.++|+|||.|++- . ..+++++|+.+-.
T Consensus 139 Dm~ess--~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~ 192 (257)
T d2p41a1 139 DIGESS--PNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR 192 (257)
T ss_dssp CCCCCC--SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred eCCCCC--CCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHH
Confidence 643221 111122 2444447999999999996 2 3456655555433
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.01 E-value=0.37 Score=47.60 Aligned_cols=115 Identities=10% Similarity=0.049 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhcccceec-------
Q 006834 459 ELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERGLIGTYQ------- 530 (629)
Q Consensus 459 ~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~ergli~~~~------- 530 (629)
..+...+.+..-+ .....++||-+|.|-|+.++.+.+. +|--+-+|..|. ..+.++.+- ....+
T Consensus 90 ~~YhE~l~h~pl~----~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~--~Vv~~a~~~--~~~~~~~~~dpr 161 (312)
T d2b2ca1 90 FSYQEMLAHLPMF----AHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDE--MVIDVAKKF--LPGMSCGFSHPK 161 (312)
T ss_dssp SHHHHHHHHHHHH----HSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCH--HHHHHHHHH--CTTTSGGGGCTT
T ss_pred HHHHHHhhhHHHh----cCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccH--HHHHHHHhh--chhhccccCCCC
Confidence 4455555443322 2345778999999999999999886 564445555554 355544431 11111
Q ss_pred ------cccccCCCCCcccceeeccccccccCCC-cCHHHHHHHHhhcccCCcEEEEE
Q 006834 531 ------DWCEAFSTYPRTYDLIHASGVFSIYQDR-CDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 531 ------~~~e~f~~yp~t~Dl~H~~~~fs~~~~~-c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
|--+-+..-++.||+|-.+.--....+. ---..++..+.|+|+|||.++..
T Consensus 162 v~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 162 LDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred eEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 1111112345789998875322111111 11134788899999999999995
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.89 E-value=0.27 Score=43.35 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=63.5
Q ss_pred cCccCCCCCeEEEeCC-C-CchHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC------CCCCCC
Q 006834 216 IPLTGGNIRTAVDTGC-G-VASWGAYLLK-RDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL------PYPARA 286 (629)
Q Consensus 216 L~~~~g~~~~VLDIGC-G-tG~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L------p~pd~s 286 (629)
....+++ +||=+|| | .|..+..+++ .+.. .++.+|.+++-++++++.|....+.. ..... -...+.
T Consensus 23 ~~~~~g~--~vlV~G~~G~vG~~~~~~~~~~g~~--~V~~~~~~~~~~~~~~~~Ga~~~i~~-~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 23 ASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREEAVEAAKRAGADYVINA-SMQDPLAEIRRITESKG 97 (170)
T ss_dssp TTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHHHHHHHHHHTCSEEEET-TTSCHHHHHHHHTTTSC
T ss_pred hCCCCCC--EEEEEeccccceeeeeecccccccc--cccccccchhhHHHHHHcCCceeecc-CCcCHHHHHHHHhhccc
Confidence 3444444 8999997 3 5666666655 4543 45667999999999999886543321 11111 012456
Q ss_pred eeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 287 FDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 287 FDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
||+|+... .....+....+.|+|||.+++.+
T Consensus 98 ~d~vid~~-------g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 98 VDAVIDLN-------NSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp EEEEEESC-------CCHHHHTTGGGGEEEEEEEEECC
T ss_pred chhhhccc-------ccchHHHhhhhhcccCCEEEEec
Confidence 99999633 22456778899999999999875
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.81 E-value=0.13 Score=50.27 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh-----c-c----cceec-cccccCCCCCcccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER-----G-L----IGTYQ-DWCEAFSTYPRTYD 544 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er-----g-l----i~~~~-~~~e~f~~yp~t~D 544 (629)
...-++||-+|.|-|+.+..+.+. ++--+-++..|. ..++++.+- | + +.+++ |--+-+..-++.||
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~--~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE--DVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH--HHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 345678999999999999999987 564555566664 355555432 1 1 11222 22222334568899
Q ss_pred eeeccccccccCCCcCH--HHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQDRCDI--TNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~~c~~--~~~l~e~dRiLrPgG~~i~~ 581 (629)
+|-++ +|.-...--.+ ...+..+.|.|+|||.+++.
T Consensus 154 vIi~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 154 VIITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEEE-CC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 98876 34322111111 24788889999999999985
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.58 E-value=0.47 Score=42.01 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=63.0
Q ss_pred HHhhcCccCCCCCeEEEeCC--CCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC------C
Q 006834 212 INELIPLTGGNIRTAVDTGC--GVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP------Y 282 (629)
Q Consensus 212 I~~lL~~~~g~~~~VLDIGC--GtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp------~ 282 (629)
+.+.....+++ +||=.|. |.|.++..+++. |..++. ++.+++..+.+++.|....+.. ....+. .
T Consensus 17 l~~~~~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~~vi~---~~~~~~~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 17 LCEVGRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYT---TAGSDAKREMLSRLGVEYVGDS-RSVDFADEILELT 90 (183)
T ss_dssp HHTTSCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEE---EESSHHHHHHHHTTCCSEEEET-TCSTHHHHHHHHT
T ss_pred HHHHhCCCCCC--EEEEECCCCCcccccchhhcccccccee---eecccccccccccccccccccC-CccCHHHHHHHHh
Confidence 33444444444 8998773 367777777764 554433 3567778899988876543321 111110 1
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
....||+|+..-. ...+.++.++|+|+|.++..+
T Consensus 91 ~~~g~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 91 DGYGVDVVLNSLA--------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp TTCCEEEEEECCC--------THHHHHHHHTEEEEEEEEECS
T ss_pred CCCCEEEEEeccc--------chHHHHHHHHhcCCCEEEEEc
Confidence 3467999996442 246788889999999999874
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=88.32 E-value=0.23 Score=47.56 Aligned_cols=56 Identities=11% Similarity=-0.075 Sum_probs=42.8
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcC
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERG 267 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg 267 (629)
..+++.+.+.... ++ ..|||.-||+|+.+....+.|-.. .|+|++++.++.|++|-
T Consensus 237 ~~L~~rlI~~~s~-~g--diVlDpF~GSGTT~~AA~~lgR~~---Ig~El~~~y~~~a~~Rl 292 (320)
T d1booa_ 237 AKLPEFFIRMLTE-PD--DLVVDIFGGSNTTGLVAERESRKW---ISFEMKPEYVAASAFRF 292 (320)
T ss_dssp THHHHHHHHHHCC-TT--CEEEETTCTTCHHHHHHHHTTCEE---EEEESCHHHHHHHHGGG
T ss_pred hHHHHHhhhhccc-CC--CEEEecCCCCcHHHHHHHHcCCcE---EEEeCCHHHHHHHHHHH
Confidence 4455566555433 33 489999999999998888888754 45599999999999883
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=88.01 E-value=0.067 Score=48.79 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=55.2
Q ss_pred EEEeecccchhHHhhhhCCCeEEEEecCCCCCCCchHHHHhh----cc---cceeccccccCC-C---CCcccceeeccc
Q 006834 482 NVMDMNAYLGGFAAAMSKYPVWVMNVVPFHSNPDTLGAIYER----GL---IGTYQDWCEAFS-T---YPRTYDLIHASG 550 (629)
Q Consensus 482 ~vlD~~~g~Ggfaa~l~~~~v~~mnv~~~~~~~~~l~~~~er----gl---i~~~~~~~e~f~-~---yp~t~Dl~H~~~ 550 (629)
+|||+.||+|++|-..++++. ..|+-+|.....+.++.+- |+ +.+++.-+..+. . --..||+|=++=
T Consensus 44 ~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDP 121 (182)
T d2fhpa1 44 MALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDP 121 (182)
T ss_dssp EEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEech
Confidence 599999999999998888875 2344445554555554331 33 223331111111 1 124699987643
Q ss_pred cccccCCCcCHHHHHHHHh--hcccCCcEEEEE
Q 006834 551 VFSIYQDRCDITNILLEMD--RILRPEGTVIFR 581 (629)
Q Consensus 551 ~fs~~~~~c~~~~~l~e~d--RiLrPgG~~i~~ 581 (629)
=|. .-..+.+|..+. .+|+|+|.+|+-
T Consensus 122 PY~----~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 122 PYA----KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp CGG----GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhh----hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 221 123455555553 489999999984
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=87.56 E-value=2.6 Score=40.30 Aligned_cols=159 Identities=11% Similarity=0.110 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhh-----cc-----
Q 006834 457 DNELWKDRMTYYKKIDGLFHKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYER-----GL----- 525 (629)
Q Consensus 457 d~~~w~~~v~~y~~~~~~~~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~er-----gl----- 525 (629)
|...+...+.+.--+ .....++||-+|.|.|+.++.+.+. ++--+.++..|.. .++++.+- |.
T Consensus 57 de~~Yhe~l~h~~l~----~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~--Vi~~a~~~~~~~~~~~~d~r 130 (274)
T d1iy9a_ 57 DEFVYHEMVAHVPLF----THPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK--VIEYSKKFLPSIAGKLDDPR 130 (274)
T ss_dssp THHHHHHHHHHHHHH----HSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH--HHHHHHHHCHHHHTTTTSTT
T ss_pred chhhchhhhccchhh----ccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHH--HHHHHHHhChhhcccccCCC
Confidence 334444444443322 2345678999999999999999886 5645556666653 55554332 11
Q ss_pred cceec-cccccCCCCCcccceeeccccccccCCCcC--HHHHHHHHhhcccCCcEEEEEe-----CHHHHHHHHHHHhcC
Q 006834 526 IGTYQ-DWCEAFSTYPRTYDLIHASGVFSIYQDRCD--ITNILLEMDRILRPEGTVIFRD-----TVEMLVKIRSITEGM 597 (629)
Q Consensus 526 i~~~~-~~~e~f~~yp~t~Dl~H~~~~fs~~~~~c~--~~~~l~e~dRiLrPgG~~i~~d-----~~~~~~~~~~~~~~l 597 (629)
+-++. |--+-.....+.||+|-.+. +.-....-. -...+..+.|+|+|||.++..- ..+....+.+.++..
T Consensus 131 ~~i~~~D~~~~l~~~~~~yDvIi~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~ 209 (274)
T d1iy9a_ 131 VDVQVDDGFMHIAKSENQYDVIMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI 209 (274)
T ss_dssp EEEEESCSHHHHHTCCSCEEEEEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred eEEEechHHHHHhhcCCCCCEEEEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh
Confidence 11221 21122333568899987753 221111111 1457788999999999999852 223334444444443
Q ss_pred CCeEEEeecCCCC--CCCceEEEEEec
Q 006834 598 RWKSQIMDHESGP--FNPEKILFAAKT 622 (629)
Q Consensus 598 ~w~~~~~~~e~~~--~~~e~~l~~~K~ 622 (629)
=-.+..+-.---. .+.-.+++|.|.
T Consensus 210 F~~v~~y~~~vPsy~~g~w~f~~aS~~ 236 (274)
T d1iy9a_ 210 FPITKLYTANIPTYPSGLWTFTIGSKK 236 (274)
T ss_dssp CSEEEEEEECCTTSGGGCEEEEEEESS
T ss_pred cCceEEEEEEeeecCCCceEEEEEcCC
Confidence 3334333221101 122456667665
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=87.28 E-value=0.5 Score=45.17 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=57.9
Q ss_pred HHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHH---Hc----C-------CCeEEEEec
Q 006834 211 NINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFAL---ER----G-------VPAMIGVIS 276 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~---er----g-------~~~~~~v~d 276 (629)
.|.+.+....+...+|||.-||.|..+..|+..|..++ ++|-++......+ ++ . .++.+..+|
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~---~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVR---MLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEE---EEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEE---EEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 45566665555455899999999999999999987654 4498886544333 22 1 146777777
Q ss_pred CCC-CCCCCCCeeEEEecCcccc
Q 006834 277 SKR-LPYPARAFDMAHCSGCLIP 298 (629)
Q Consensus 277 ~~~-Lp~pd~sFDlV~~s~~L~h 298 (629)
... +.-...+||+|+.-..+.+
T Consensus 154 s~~~L~~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhccCCCCCEEEECCCCcc
Confidence 543 3333568999998776633
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=87.15 E-value=0.38 Score=47.13 Aligned_cols=103 Identities=11% Similarity=0.003 Sum_probs=62.5
Q ss_pred CCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc-c---------cceec-cccccCCCCCcccc
Q 006834 477 KGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG-L---------IGTYQ-DWCEAFSTYPRTYD 544 (629)
Q Consensus 477 ~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg-l---------i~~~~-~~~e~f~~yp~t~D 544 (629)
....++||=+|.|-|+.++.+.+. ++--+-+|..|. ..++++.+-- . +-+++ |.-+-....++.||
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp--~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 164 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG--LVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 164 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH--HHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCC
Confidence 345789999999999999999886 453344555554 3555554421 0 11111 22223444678899
Q ss_pred eeeccccccccCCCc--CHHHHHHHHhhcccCCcEEEEE
Q 006834 545 LIHASGVFSIYQDRC--DITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 545 l~H~~~~fs~~~~~c--~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
+|-++..-......+ --...+..+-|.|+|||.++..
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 988753322111111 1256888999999999999985
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=86.29 E-value=0.44 Score=44.09 Aligned_cols=55 Identities=15% Similarity=-0.095 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
..+++.+.++... + +..|||.-||+|+.+....+.+-.. .|+|++++.++.|++|
T Consensus 199 ~~L~~~lI~~~s~-~--gd~VlDpF~GSGTT~~aa~~~~R~~---ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 199 RDLIERIIRASSN-P--NDLVLDCFMGSGTTAIVAKKLGRNF---IGCDMNAEYVNQANFV 253 (256)
T ss_dssp HHHHHHHHHHHCC-T--TCEEEESSCTTCHHHHHHHHTTCEE---EEEESCHHHHHHHHHH
T ss_pred hhHHHHHHHHhCC-C--CCEEEECCCCchHHHHHHHHcCCeE---EEEeCCHHHHHHHHHH
Confidence 4455555555542 3 3489999999999988888887654 5559999999999887
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.27 E-value=1.1 Score=43.54 Aligned_cols=103 Identities=12% Similarity=0.100 Sum_probs=64.4
Q ss_pred CCCCeeEEEeecccchhHHhhhhCC-CeEEEEecCCCCCCCchHHHHhhc------c----cceec-cccccCCCCC-cc
Q 006834 476 HKGRYRNVMDMNAYLGGFAAAMSKY-PVWVMNVVPFHSNPDTLGAIYERG------L----IGTYQ-DWCEAFSTYP-RT 542 (629)
Q Consensus 476 ~~~~~R~vlD~~~g~Ggfaa~l~~~-~v~~mnv~~~~~~~~~l~~~~erg------l----i~~~~-~~~e~f~~yp-~t 542 (629)
.....++||=+|.|-|+.++++.+. ++--+-+|..|.. .+++..+-- + +-++. |--+-+...+ +.
T Consensus 77 ~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~--Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~ 154 (290)
T d1xj5a_ 77 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKM--VVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGS 154 (290)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTC
T ss_pred hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHH--HHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccC
Confidence 3456788999999999999999886 6644556666553 555543311 1 11111 2222333455 58
Q ss_pred cceeeccccccccC--CCcCHHHHHHHHhhcccCCcEEEEE
Q 006834 543 YDLIHASGVFSIYQ--DRCDITNILLEMDRILRPEGTVIFR 581 (629)
Q Consensus 543 ~Dl~H~~~~fs~~~--~~c~~~~~l~e~dRiLrPgG~~i~~ 581 (629)
||+|-.+ +|.-.. ..---...+..+.|+|+|||.++..
T Consensus 155 yDvIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 155 YDAVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 9998764 333211 1111256888999999999999995
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=85.62 E-value=1 Score=40.00 Aligned_cols=101 Identities=15% Similarity=0.042 Sum_probs=67.6
Q ss_pred hhcCccCCCCCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC------CCCCC
Q 006834 214 ELIPLTGGNIRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL------PYPAR 285 (629)
Q Consensus 214 ~lL~~~~g~~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L------p~pd~ 285 (629)
+.....+++ +||=+|||. |.++..+++. |.. .++..|.+++-++.|++-|....+........ ....+
T Consensus 22 ~~a~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~--~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 22 NTAKVTPGS--TCAVFGLGCVGLSAIIGCKIAGAS--RIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp TTSCCCTTC--EEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred HhhCCCCCC--EEEEECCChHHHHHHHHHHHhCCc--eeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence 344445555 899999996 8888887775 443 34566999999999999886544321111111 01235
Q ss_pred CeeEEEecCcccccccCHHHHHHHHHhcccCC-cEEEEEeC
Q 006834 286 AFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPG-GYWILSGP 325 (629)
Q Consensus 286 sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPG-G~liis~P 325 (629)
.+|+|+-.- -....+.+..+.|+|| |.+++.+.
T Consensus 98 G~d~vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 98 GVDYSLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp CBSEEEESS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCcEEEEec-------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 789998422 2246789999999996 99999864
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.52 E-value=0.6 Score=40.58 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=59.9
Q ss_pred CccCCCCCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCC---CCC-CCCCCeeEE
Q 006834 217 PLTGGNIRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSK---RLP-YPARAFDMA 290 (629)
Q Consensus 217 ~~~~g~~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~---~Lp-~pd~sFDlV 290 (629)
...+++ +||=.|+|. |..+..+++. +. .+..+|.+++-++++++.|....+...+.. .+. ...+.+|+|
T Consensus 24 ~~~~g~--~vlv~G~G~iG~~a~~~a~~~g~---~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 24 GAKPGE--WVAIYGIGGLGHVAVQYAKAMGL---NVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TCCTTC--EEEEECCSTTHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCCCC--EEEEeecccchhhhhHHHhcCCC---eEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 344444 888899885 5666666665 34 345669999999999998865433211110 000 113345555
Q ss_pred EecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 291 HCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 291 ~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
.+.. ....+....+.|+|||.+++.+
T Consensus 99 ~~~~--------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 99 VTAV--------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp ESSC--------CHHHHHHHHHHEEEEEEEEECC
T ss_pred eecC--------CHHHHHHHHHHhccCCceEecc
Confidence 4321 2457899999999999999975
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.21 E-value=1.6 Score=38.62 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHhhcCccCCCCCeEEEeCCC--CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC-----CC
Q 006834 211 NINELIPLTGGNIRTAVDTGCG--VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL-----PY 282 (629)
Q Consensus 211 ~I~~lL~~~~g~~~~VLDIGCG--tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L-----p~ 282 (629)
.+.+....++++ +||=.|++ .|..+..|++. |..+ ++++.+++.++.+++.+....+...+.... ..
T Consensus 20 al~~~~~v~~G~--~VlV~ga~ggvG~~aiqlak~~Ga~v---i~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 20 GLLEVCGVKGGE--TVLVSAAAGAVGSVVGQIAKLKGCKV---VGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp HHHTTTCCCSSC--EEEESSTTSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHH
T ss_pred HHHHHhCCCCCC--EEEEEeCCCchhHHHHHHHHccCCEE---EEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHh
Confidence 444555555555 89987775 56778888875 5544 445788899999999886654432221110 01
Q ss_pred CCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 283 PARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 283 pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
..+.+|+|+-.- ....+.+..++|+|||.+++.+
T Consensus 95 ~~~Gvd~v~D~v--------G~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 95 SPDGYDCYFDNV--------GGEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CTTCEEEEEESS--------CHHHHHHHGGGEEEEEEEEECC
T ss_pred hcCCCceeEEec--------CchhhhhhhhhccCCCeEEeec
Confidence 345699998522 1457889999999999999975
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.92 E-value=1.1 Score=39.86 Aligned_cols=102 Identities=13% Similarity=-0.021 Sum_probs=60.7
Q ss_pred HhhcCccCCCCCeEEEeCCCC-chHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC------CCC
Q 006834 213 NELIPLTGGNIRTAVDTGCGV-ASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP------YPA 284 (629)
Q Consensus 213 ~~lL~~~~g~~~~VLDIGCGt-G~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp------~pd 284 (629)
.+....++++ +||=+|||. |.++..+++. +.. .++.+|.+++-++.|++.|....+...+..... ...
T Consensus 22 ~~~~~~~~g~--tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g 97 (176)
T d1d1ta2 22 VKTGKVKPGS--TCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTG 97 (176)
T ss_dssp HTTSCCCTTC--EEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred HHhhCCCCCC--EEEEECCCchhHHHHHHHHHcCCc--eEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcc
Confidence 3333444455 899999984 4555555554 433 456679999999999999876544322211110 123
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
+.+|+|+-.-. ....+...+..+++++|.+++.+
T Consensus 98 ~G~d~vi~~~g------~~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 98 NNVGYTFEVIG------HLETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp SCCCEEEECSC------CHHHHHHHHTTSCTTTCEEEECS
T ss_pred ccceEEEEeCC------chHHHHHHHHHhhcCCeEEEEEE
Confidence 56888874221 22333344445556669999876
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.52 E-value=0.71 Score=45.34 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=61.3
Q ss_pred cCCCCeeEEEeecccchhHHhhhh----CCCeEEEEecCCCCCCCchHH---HHh-hcccce--eccccccCCCCCcccc
Q 006834 475 FHKGRYRNVMDMNAYLGGFAAAMS----KYPVWVMNVVPFHSNPDTLGA---IYE-RGLIGT--YQDWCEAFSTYPRTYD 544 (629)
Q Consensus 475 ~~~~~~R~vlD~~~g~Ggfaa~l~----~~~v~~mnv~~~~~~~~~l~~---~~e-rgli~~--~~~~~e~f~~yp~t~D 544 (629)
..+|. .||||.||-||=+.+|+ ..+..+.| |.....+.. ..+ -|+..+ +++--..+..++..||
T Consensus 114 ~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~----d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 114 PKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAF----DVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp CCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEE----CSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred CCccc--eeeecccchhhhhHhhhhhcccccceeee----ccCHHHHHHHHHHHHHHHhhcccccccccccccccccccc
Confidence 45565 49999999999555553 33443333 222223322 223 344332 3321122333457899
Q ss_pred eee----ccc--ccccc-----C-CCcCHH-------HHHHHHhhcccCCcEEEEE----eCHHHHHHHHHHHhcCCC
Q 006834 545 LIH----ASG--VFSIY-----Q-DRCDIT-------NILLEMDRILRPEGTVIFR----DTVEMLVKIRSITEGMRW 599 (629)
Q Consensus 545 l~H----~~~--~fs~~-----~-~~c~~~-------~~l~e~dRiLrPgG~~i~~----d~~~~~~~~~~~~~~l~w 599 (629)
.|- |+| ++... . ..-++. .+|...-+.|||||++|.+ .+.+--..|+.+++...+
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~ 265 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDV 265 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCC
Confidence 754 333 33211 0 011111 2888889999999999996 233333445555555443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.15 E-value=2 Score=37.18 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=59.7
Q ss_pred eEEEeCCCC--chHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCCCCCCCeeEEEecCcccccccC
Q 006834 225 TAVDTGCGV--ASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLPYPARAFDMAHCSGCLIPWYMY 302 (629)
Q Consensus 225 ~VLDIGCGt--G~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp~pd~sFDlV~~s~~L~h~~~d 302 (629)
+|+=||||. |+++..|.+.+.. ..++++|.+++.++.|++.+.-..... +.. ...+...|+|+..--. . .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~-~~I~~~D~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~dlIila~p~---~-~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFK-GKIYGYDINPESISKAVDLGIIDEGTT-SIA--KVEDFSPDFVMLSSPV---R-T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHHHTTSCSEEES-CGG--GGGGTCCSEEEECSCH---H-H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCC-eEEEEEECChHHHHHHHHhhcchhhhh-hhh--hhhccccccccccCCc---h-h
Confidence 577799984 4566677777753 357788999999999999875322221 111 1223467999864422 1 2
Q ss_pred HHHHHHHHHhcccCCcEEEEE
Q 006834 303 DGLYLLEVDRVLRPGGYWILS 323 (629)
Q Consensus 303 ~~~~L~el~RvLKPGG~liis 323 (629)
-...+.++...++++-.++-.
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEEC
T ss_pred hhhhhhhhhcccccccccccc
Confidence 456888999999987666544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.07 E-value=1.2 Score=39.32 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=61.2
Q ss_pred HhhcCccCCCCCeEEEeCCCC-chHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC------CCCC
Q 006834 213 NELIPLTGGNIRTAVDTGCGV-ASWGAYLLK-RDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL------PYPA 284 (629)
Q Consensus 213 ~~lL~~~~g~~~~VLDIGCGt-G~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L------p~pd 284 (629)
.+....++++ +||=+|||. |.++..+++ .+.. .++.+|.+++-++.|++.|....+...+.... ....
T Consensus 20 ~~~a~~~~G~--~VlV~GaGgvGl~a~~~ak~~G~~--~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 20 VNTAKVTPGS--TCAVFGLGGVGFSAIVGCKAAGAS--RIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp HTTTCCCTTC--EEEEECCSHHHHHHHHHHHHHTCS--EEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHhhCCCCCC--EEEEECCCchhHHHHHHHHHcCCc--eeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcC
Confidence 3444455555 899999984 455555554 4543 35667999999999999886554421111110 0123
Q ss_pred CCeeEEEecCcccccccCHHHHHHHHHhccc-CCcEEEEEe
Q 006834 285 RAFDMAHCSGCLIPWYMYDGLYLLEVDRVLR-PGGYWILSG 324 (629)
Q Consensus 285 ~sFDlV~~s~~L~h~~~d~~~~L~el~RvLK-PGG~liis~ 324 (629)
+.+|+|+-.- .....+.+....++ ++|.+++.+
T Consensus 96 ~G~d~vid~~-------g~~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 96 GGVDYAVECA-------GRIETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp SCBSEEEECS-------CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCcEEEEcC-------CCchHHHHHHHHHHHhcCceEEEE
Confidence 5688888432 12345566666555 569998876
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.91 E-value=0.89 Score=42.46 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=37.3
Q ss_pred EEEecCCCC--CCCCCCeeEEEecCccc----ccc------cCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 272 IGVISSKRL--PYPARAFDMAHCSGCLI----PWY------MYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 272 ~~v~d~~~L--p~pd~sFDlV~~s~~L~----h~~------~d~~~~L~el~RvLKPGG~liis~P 325 (629)
|.++|...+ .++++++|+|++..-+. .+. ......+.++.|+|||||.+++...
T Consensus 7 ~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 7 YDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 555665443 36789999999966431 111 1134678999999999999998753
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.58 E-value=0.64 Score=44.90 Aligned_cols=72 Identities=14% Similarity=0.022 Sum_probs=52.0
Q ss_pred CCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC---CCCCCeeEEEecC
Q 006834 223 IRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP---YPARAFDMAHCSG 294 (629)
Q Consensus 223 ~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp---~pd~sFDlV~~s~ 294 (629)
+.+|+|+-||.|.+..-|...|+..--+.++|+.+.+++..+.+.....+...|...+. ++...+|+++.+.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 34799999999999888877786432356779999999988877665556656665553 2223689999643
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.57 E-value=0.92 Score=40.65 Aligned_cols=91 Identities=21% Similarity=0.209 Sum_probs=59.7
Q ss_pred CeEEEeCC--CCchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecC--CC-CCCCCCCeeEEEecCccc
Q 006834 224 RTAVDTGC--GVASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISS--KR-LPYPARAFDMAHCSGCLI 297 (629)
Q Consensus 224 ~~VLDIGC--GtG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~--~~-Lp~pd~sFDlV~~s~~L~ 297 (629)
.+||=.|. |.|.++..|++. |..++.. .-+++-.+.+++.|....+..-+. .. .....+.+|+|+-.-.
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat---~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg-- 107 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEAS---TGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG-- 107 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEE---ESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST--
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEe---cCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC--
Confidence 37888884 577899998864 6666554 566666778888776543321111 11 1223568999885321
Q ss_pred ccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 298 PWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 298 h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
...+.+..++|+|||.++..++
T Consensus 108 ------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 108 ------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp ------TTTHHHHHHTEEEEEEEEECSC
T ss_pred ------chhHHHHHHHhCCCceEEEeec
Confidence 2358899999999999999765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.48 E-value=0.69 Score=43.27 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCccCCCCCeEEEeCCCCchHHHHHHHcCCcEeEEEeecCcHHHHHHHHHc
Q 006834 206 DAYIDNINELIPLTGGNIRTAVDTGCGVASWGAYLLKRDILTMSFARRDTHEAQVQFALER 266 (629)
Q Consensus 206 ~~~i~~I~~lL~~~~g~~~~VLDIGCGtG~~a~~La~~g~~~v~i~gvDiS~~~i~~A~er 266 (629)
..+++.+.+... ..+ ..|||.-||+|+.+....+.|-.. .|+|+++..++.|++|
T Consensus 194 ~~L~~~~I~~~s-~~g--diVLDpF~GSGTT~~Aa~~lgR~~---ig~El~~~y~~~a~~R 248 (279)
T d1eg2a_ 194 AAVIERLVRALS-HPG--STVLDFFAGSGVTARVAIQEGRNS---ICTDAAPVFKEYYQKQ 248 (279)
T ss_dssp HHHHHHHHHHHS-CTT--CEEEETTCTTCHHHHHHHHHTCEE---EEEESSTHHHHHHHHH
T ss_pred hhHHHHHHHhhc-CCC--CEEEecCCCCcHHHHHHHHhCCeE---EEEeCCHHHHHHHHHH
Confidence 444555555443 233 489999999999988888887654 4559999999999987
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=81.10 E-value=1.6 Score=38.15 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=62.4
Q ss_pred cCCCCCeEEEeCCCC-chHHHHHHH-cCCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCC----C-CCCCCeeEEE
Q 006834 219 TGGNIRTAVDTGCGV-ASWGAYLLK-RDILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRL----P-YPARAFDMAH 291 (629)
Q Consensus 219 ~~g~~~~VLDIGCGt-G~~a~~La~-~g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~L----p-~pd~sFDlV~ 291 (629)
.+++ +||=+|+|. |.++..+++ .+.. .++.+|.+++-++.+++.+....+.. ..... . ...+.+|+|+
T Consensus 31 ~~g~--~vli~GaG~vG~~~~~~a~~~g~~--~vv~~~~~~~k~~~~~~~ga~~~i~~-~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 31 YPGA--YVAIVGVGGLGHIAVQLLKVMTPA--TVIALDVKEEKLKLAERLGADHVVDA-RRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CTTC--EEEEECCSHHHHHHHHHHHHHCCC--EEEEEESSHHHHHHHHHTTCSEEEET-TSCHHHHHHHHTTTCCEEEEE
T ss_pred CCCC--EEEEeCCChHHHHHHHHHHhhcCc--ccccccchhHHHHHHhhcccceeecC-cccHHHHHHHhhCCCCceEEE
Confidence 4444 899999984 555566664 4544 34566999999999998875433321 11110 0 1235699998
Q ss_pred ecCcccccccCHHHHHHHHHhcccCCcEEEEEeC
Q 006834 292 CSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSGP 325 (629)
Q Consensus 292 ~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~P 325 (629)
-.-. ....+....++|++||.+++.+.
T Consensus 106 d~~g-------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 106 DFVG-------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp ESSC-------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred EecC-------cchHHHHHHHHHhCCCEEEEEeC
Confidence 5332 24568889999999999999763
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=80.96 E-value=2.3 Score=37.07 Aligned_cols=96 Identities=11% Similarity=-0.018 Sum_probs=64.3
Q ss_pred HhhcCccCCCCCeEEEeCCC--CchHHHHHHHc-CCcEeEEEeecCcHHHHHHHHHcCCCeEEEEecCCCCC--------
Q 006834 213 NELIPLTGGNIRTAVDTGCG--VASWGAYLLKR-DILTMSFARRDTHEAQVQFALERGVPAMIGVISSKRLP-------- 281 (629)
Q Consensus 213 ~~lL~~~~g~~~~VLDIGCG--tG~~a~~La~~-g~~~v~i~gvDiS~~~i~~A~erg~~~~~~v~d~~~Lp-------- 281 (629)
.+.....+++ +||=.|+| .|.++..+++. |.. ++.++.+++-.+.+++.|....+ +...-.
T Consensus 21 ~~~~~l~~g~--~Vlv~ga~g~vG~~~iqlak~~Ga~---Vi~~~~s~~k~~~~~~lGa~~vi---~~~~~d~~~~v~~~ 92 (179)
T d1qora2 21 RKTYEIKPDE--QFLFHAAAGGVGLIACQWAKALGAK---LIGTVGTAQKAQSALKAGAWQVI---NYREEDLVERLKEI 92 (179)
T ss_dssp HTTSCCCTTC--EEEESSTTBHHHHHHHHHHHHHTCE---EEEEESSHHHHHHHHHHTCSEEE---ETTTSCHHHHHHHH
T ss_pred HHHhCCCCCC--EEEEEccccccchHHHHHHHHhCCe---EeecccchHHHHHHHhcCCeEEE---ECCCCCHHHHHHHH
Confidence 3333444454 88888655 67888888775 554 45569999999999998865433 222211
Q ss_pred CCCCCeeEEEecCcccccccCHHHHHHHHHhcccCCcEEEEEe
Q 006834 282 YPARAFDMAHCSGCLIPWYMYDGLYLLEVDRVLRPGGYWILSG 324 (629)
Q Consensus 282 ~pd~sFDlV~~s~~L~h~~~d~~~~L~el~RvLKPGG~liis~ 324 (629)
-....+|+|+..-.- ..+....++|+|+|.+++.+
T Consensus 93 t~g~g~d~v~d~~g~--------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 93 TGGKKVRVVYDSVGR--------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp TTTCCEEEEEECSCG--------GGHHHHHHTEEEEEEEEECC
T ss_pred hCCCCeEEEEeCccH--------HHHHHHHHHHhcCCeeeecc
Confidence 124679999864322 24678899999999988754
|