Citrus Sinensis ID: 006843

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63

MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFGQQLIK

cccccccccHHHccHHHHHHHHHHHccccHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEccccccccccHHHHHHccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHcccccEEEEEEccccccccHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccc

cccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccEcccccccccHHHHHHccccEEEEccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccHHHHHHHHHHHHHHHHHccccHEEEEEHHHHccccHcccccHHHHHHHccccccEEEEEccccccccEccccccccccEEEEEEccccccccccccHHHHHccHHHHHHcccccEEEEEccHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcHHHccc

malqginlplafngQEAIWQKVFMNFNVTmedlndffsgpAFLAWARMgnlhgwggplaQNWLNQQLVLQKKIVSRMLElgmtpvlpsfagnvpaalkkifpsanitrlgdwntvdrnprwcctylldptdplFVEIGEAFIKQQILeygdvtdiyncdtfnentpptndtnyISSLGAAVYKAMSEGDKDAVWLMQGwlfysdsafwkppqmkallhsvplgKMIVLDLFAevkpiwrtssqfygapYVWCMLhnfggnieiygildsiasgpvdarvsensTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHrrygkavpeVEATWEILYHTVYnctdgiadhntdfivkfpdwdpsllsgsaiskrdqmhalhalpgprrflseensdmpqahLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQhkdasafniHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVtmwydtnittqskLHDYANKFWSGLLVDYYLPRASTYFDYMSkslreksefQVDRWRQQWVFISISwqsnwktgtknypirakgDSIAIAKVLYDKYFGQQLIK

malqginlplaFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPsanitrlgdwntvdrnPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFIsiswqsnwktgtknypirakGDSIAIAKVLYDKYFGQQLIK

****GINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLS********************************AHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFGQQ***

**LQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFGQQL**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		629	2.2.26 [Sep-21-2011]
P54802		743	Alpha-N-acetylglucosamini	yes	no	0.915	0.775	0.399	1e-137

>sp\|P54802\|ANAG_HUMAN Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2	Back alignment and function desciption

 Score =  488 bits (1257), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/626 (39%), Positives = 382/626 (61%), Gaps = 50/626 (7%)

Query: 1   MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQ 60
           MAL GINL LA++GQEAIWQ+V++   +T  ++N+FF+GPAFLAW RMGNLH W GPL  
Sbjct: 157 MALNGINLALAWSGQEAIWQRVYLALGLTQAEINEFFTGPAFLAWGRMGNLHTWDGPLPP 216

Query: 61  NWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPR 120
           +W  +QL LQ +++ +M   GMTPVLP+FAG+VP A+ ++FP  N+T++G W     N  
Sbjct: 217 SWHIKQLYLQHRVLDQMRSFGMTPVLPAFAGHVPEAVTRVFPQVNVTKMGSWGHF--NCS 274

Query: 121 WCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAA 180
           + C++LL P DP+F  IG  F+++ I E+G    IY  DTFNE  PP+++ +Y+++   A
Sbjct: 275 YSCSFLLAPEDPIFPIIGSLFLRELIKEFG-TDHIYGADTFNEMQPPSSEPSYLAAATTA 333

Query: 181 VYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRT 240
           VY+AM+  D +AVWL+QGWLF     FW P Q++A+L +VP G+++VLDLFAE +P++  
Sbjct: 334 VYEAMTAVDTEAVWLLQGWLFQHQPQFWGPAQIRAVLGAVPRGRLLVLDLFAESQPVYTR 393

Query: 241 SSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPV 300
           ++ F G P++WCMLHNFGGN  ++G L+++  GP  AR+  NSTMVG GM  EGI QN V
Sbjct: 394 TASFQGQPFIWCMLHNFGGNHGLFGALEAVNGGPEAARLFPNSTMVGTGMAPEGISQNEV 453

Query: 301 VYELMSEMAFRNEKVQVL-EWLKTYAHRRYGKAVPEVEATWEILYHTVYNCT-DGIADHN 358
           VY LM+E+ +R + V  L  W+ ++A RRYG + P+  A W +L  +VYNC+ +    HN
Sbjct: 454 VYSLMAELGWRKDPVPDLAAWVTSFAARRYGVSHPDAGAAWRLLLRSVYNCSGEACRGHN 513

Query: 359 TDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIK 418
              +V+     PSL   ++I                               WY+  ++ +
Sbjct: 514 RSPLVR----RPSLQMNTSI-------------------------------WYNRSDVFE 538

Query: 419 GLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKD-ASAFNIHSQK 477
             +L L +  +LA    +RYDL+D+TRQA+ +L +  Y +A  A+  K+ AS        
Sbjct: 539 AWRLLLTSAPSLATSPAFRYDLLDLTRQAVQELVSLYYEEARSAYLSKELASLLRAGGVL 598

Query: 478 FLQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQS 537
             +L+  +DE+LAS+  FLLG+WLE A+  A + +E   YE N+R Q+T+W       + 
Sbjct: 599 AYELLPALDEVLASDSRFLLGSWLEQARAAAVSEAEADFYEQNSRYQLTLW-----GPEG 653

Query: 538 KLHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWK 597
            + DYANK  +GL+ +YY PR   + + +  S+ +   FQ  ++ +  VF     +  + 
Sbjct: 654 NILDYANKQLAGLVANYYTPRWRLFLEALVDSVAQGIPFQQHQFDKN-VF---QLEQAFV 709

Query: 598 TGTKNYPIRAKGDSIAIAKVLYDKYF 623
              + YP + +GD++ +AK ++ KY+
Sbjct: 710 LSKQRYPSQPRGDTVDLAKKIFLKYY 735


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,696,856
Number of Sequences: 539616
Number of extensions: 10334476
Number of successful extensions: 21574
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21563
Number of HSP's gapped (non-prelim): 6
length of query: 629
length of database: 191,569,459
effective HSP length: 124
effective length of query: 505
effective length of database: 124,657,075
effective search space: 62951822875
effective search space used: 62951822875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)

Involved in the degradation of heparan sulfate.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		629
224106113		806	predicted protein [Populus trichocarpa]	0.985	0.769	0.792	0.0
297736304		868	unnamed protein product [Vitis vinifera]	0.984	0.713	0.747	0.0
225450036		803	PREDICTED: alpha-N-acetylglucosaminidase	0.984	0.770	0.747	0.0
356534602		807	PREDICTED: alpha-N-acetylglucosaminidase	0.988	0.770	0.747	0.0
357458267		832	Alpha-N-acetylglucosaminidase [Medicago	0.982	0.742	0.703	0.0
357458271		807	Alpha-N-acetylglucosaminidase [Medicago	0.944	0.736	0.694	0.0
297807393		806	alpha-N-acetylglucosaminidase family [Ar	0.984	0.767	0.714	0.0
15240689		806	alpha-N-acetylglucosaminidase [Arabidops	0.985	0.769	0.707	0.0
218192858		812	hypothetical protein OsI_11626 [Oryza sa	0.977	0.757	0.705	0.0
222624949		812	hypothetical protein OsJ_10898 [Oryza sa	0.977	0.757	0.703	0.0

>gi\|224106113\|ref\|XP_002314048.1\| predicted protein [Populus trichocarpa] gi\|222850456\|gb\|EEE88003.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1047 bits (2708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/625 (79%), Positives = 552/625 (88%), Gaps = 5/625 (0%)

Query: 1   MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQ 60
           MALQGINLPLAF GQEAIWQKVFMN N+T EDLNDFF GPAFLAWARMGNLHGWGGPL+Q
Sbjct: 186 MALQGINLPLAFTGQEAIWQKVFMNLNITTEDLNDFFGGPAFLAWARMGNLHGWGGPLSQ 245

Query: 61  NWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPR 120
           NWL+QQL LQK+I+SRMLELGMTPVLPSF+GNVPAALKKIFPSANITRLGDWNTVD+NPR
Sbjct: 246 NWLDQQLCLQKQILSRMLELGMTPVLPSFSGNVPAALKKIFPSANITRLGDWNTVDKNPR 305

Query: 121 WCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAA 180
           WCCTYLL+P+DPLFVEIGEAFI+QQ+ EYGDVTDIYNCDTFNEN+PPT+D  YISSLGAA
Sbjct: 306 WCCTYLLNPSDPLFVEIGEAFIRQQVKEYGDVTDIYNCDTFNENSPPTSDPAYISSLGAA 365

Query: 181 VYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRT 240
           VYKAMS GDKDAVWLMQGWLFYSDSAFWKPPQM+ALLHSVP GKMIVLDLFAE KPIW+ 
Sbjct: 366 VYKAMSRGDKDAVWLMQGWLFYSDSAFWKPPQMQALLHSVPFGKMIVLDLFAEAKPIWKN 425

Query: 241 SSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPV 300
           SSQFYG PYVWC+LHNFGGNIE+YGILD+I+SGPVDAR+ ENSTMVGVGMCMEGIE NPV
Sbjct: 426 SSQFYGTPYVWCLLHNFGGNIEMYGILDAISSGPVDARIIENSTMVGVGMCMEGIEHNPV 485

Query: 301 VYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTD 360
           VYELMSEMAFR+ K QVLEWLKTY+ RRYGKAV +V A W+ILYHT+YNCTDGIADHNTD
Sbjct: 486 VYELMSEMAFRSGKPQVLEWLKTYSRRRYGKAVRQVVAAWDILYHTIYNCTDGIADHNTD 545

Query: 361 FIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEE-NSDMPQAHLWYSNQELIKG 419
           FIVKFPDWDPSL SGS IS++D M  L    G RRFL +E +SD P+AHLWYS QE+I+ 
Sbjct: 546 FIVKFPDWDPSLHSGSNISEQDNMRILLTSSGTRRFLFQETSSDFPEAHLWYSTQEVIQA 605

Query: 420 LKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFL 479
           L LFL+AGN LAG  TYRYDLVD+TRQ LSKLANQVY DA+IAF+ KDA A N+H QKFL
Sbjct: 606 LWLFLDAGNDLAGSPTYRYDLVDLTRQVLSKLANQVYRDAMIAFRRKDARALNLHGQKFL 665

Query: 480 QLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKL 539
           Q+IKDID LLAS+DNFLLGTWLESAKKLA +P++M  YE+NARTQVTMWYDT  T QS+L
Sbjct: 666 QIIKDIDVLLASDDNFLLGTWLESAKKLAVDPNDMKLYEWNARTQVTMWYDTTKTNQSQL 725

Query: 540 HDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTG 599
           HDYANKFWSGLL DYYLPRASTYF ++ KSL E   F++  WR++W+  S  WQ++    
Sbjct: 726 HDYANKFWSGLLEDYYLPRASTYFGHLMKSLEENKNFKLTEWRKEWIAFSNKWQAD---- 781

Query: 600 TKNYPIRAKGDSIAIAKVLYDKYFG 624
           TK YP++AKGD++AIAK LY KYFG
Sbjct: 782 TKIYPVKAKGDALAIAKALYRKYFG 806

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297736304\|emb\|CBI24942.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225450036\|ref\|XP_002273084.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356534602\|ref\|XP_003535842.1\| PREDICTED: alpha-N-acetylglucosaminidase-like [Glycine max]	Back alignment and taxonomy information

>gi\|357458267\|ref\|XP_003599414.1\| Alpha-N-acetylglucosaminidase [Medicago truncatula] gi\|355488462\|gb\|AES69665.1\| Alpha-N-acetylglucosaminidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357458271\|ref\|XP_003599416.1\| Alpha-N-acetylglucosaminidase [Medicago truncatula] gi\|355488464\|gb\|AES69667.1\| Alpha-N-acetylglucosaminidase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297807393\|ref\|XP_002871580.1\| alpha-N-acetylglucosaminidase family [Arabidopsis lyrata subsp. lyrata] gi\|297317417\|gb\|EFH47839.1\| alpha-N-acetylglucosaminidase family [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15240689|ref|NP_196873.1| alpha-N-acetylglucosaminidase [Arabidopsis thaliana] gi|9758035|dbj|BAB08696.1| alpha-N-acetylglucosaminidase [Arabidopsis thaliana] gi|19423948|gb|AAL87291.1| putative alpha-N-acetylglucosaminidase [Arabidopsis thaliana] gi|21436231|gb|AAM51254.1| putative alpha-N-acetylglucosaminidase [Arabidopsis thaliana] gi|332004545|gb|AED91928.1| alpha-N-acetylglucosaminidase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|218192858\|gb\|EEC75285.1\| hypothetical protein OsI_11626 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|222624949\|gb\|EEE59081.1\| hypothetical protein OsJ_10898 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		629
TAIR\|locus:2173209		806	CYL1 "AT5G13690" [Arabidopsis	0.985	0.769	0.707	1.9e-250
RGD\|1564228		739	Naglu "N-acetylglucosaminidase	0.575	0.489	0.498	2.8e-135
UNIPROTKB\|F1S1D7		744	NAGLU "Uncharacterized protein	0.575	0.486	0.493	5.2e-134
UNIPROTKB\|P54802		743	NAGLU "Alpha-N-acetylglucosami	0.575	0.487	0.487	4.8e-131
UNIPROTKB\|H9L296		601	H9L296 "Uncharacterized protei	0.565	0.592	0.482	8.5e-119
UNIPROTKB\|A6QM01		667	NAGLU "NAGLU protein" [Bos tau	0.575	0.542	0.490	1.3e-115
DICTYBASE\|DDB_G0291998		798	naglu "alpha-N-acetylglucosami	0.581	0.458	0.452	5.8e-105
FB\|FBgn0014417		778	CG13397 [Drosophila melanogast	0.546	0.442	0.404	1.2e-100

TAIR\|locus:2173209 CYL1 "AT5G13690" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2412 (854.1 bits), Expect = 1.9e-250, P = 1.9e-250
 Identities = 442/625 (70%), Positives = 525/625 (84%)

Query:     1 MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQ 60
             MALQGINLPLAF GQEAIWQKVF  FN++ EDL+D+F GPAFLAWARMGNLH WGGPL++
Sbjct:   184 MALQGINLPLAFTGQEAIWQKVFKRFNISKEDLDDYFGGPAFLAWARMGNLHAWGGPLSK 243

Query:    61 NWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPR 120
             NWL+ QL+LQK+I+SRML+ GMTPVLPSF+GNVP+AL+KI+P ANITRL +WNTVD + R
Sbjct:   244 NWLDDQLLLQKQILSRMLKFGMTPVLPSFSGNVPSALRKIYPEANITRLDNWNTVDGDSR 303

Query:   121 WCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAA 180
             WCCTYLL+P+DPLF+EIGEAFIKQQ  EYG++T+IYNCDTFNENTPPT++  YISSLGAA
Sbjct:   304 WCCTYLLNPSDPLFIEIGEAFIKQQTEEYGEITNIYNCDTFNENTPPTSEPEYISSLGAA 363

Query:   181 VYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRT 240
             VYKAMS+G+K+AVWLMQGWLF SDS FWKPPQ+KALLHSVP GKMIVLDL+AEVKPIW  
Sbjct:   364 VYKAMSKGNKNAVWLMQGWLFSSDSKFWKPPQLKALLHSVPFGKMIVLDLYAEVKPIWNK 423

Query:   241 SSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPV 300
             S+QFYG PY+WCMLHNFGGNIE+YG LDSI+SGPVDARVS+NSTMVGVGMCMEGIEQNPV
Sbjct:   424 SAQFYGTPYIWCMLHNFGGNIEMYGALDSISSGPVDARVSKNSTMVGVGMCMEGIEQNPV 483

Query:   301 VYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTD 360
             VYEL SEMAFR+EKV V +WLK+YA RRY K   ++EA WEILYHTVYNCTDGIADHNTD
Sbjct:   484 VYELTSEMAFRDEKVDVQKWLKSYARRRYMKENHQIEAAWEILYHTVYNCTDGIADHNTD 543

Query:   361 FIVKFPDWDPSLLSGSAISKRDQ-MHALHALPGPRRFL-SEENSDMPQAHLWYSNQELIK 418
             FIVK PDWDPS      + ++D  M +       RR L  ++ +D+P+AHLWYS +E+I+
Sbjct:   544 FIVKLPDWDPSSSVQDDLKQKDSYMISTGPYETKRRVLFQDKTADLPKAHLWYSTKEVIQ 603

Query:   419 GLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKF 478
              LKLFL AG+ L+   TYRYD+VD+TRQ LSKLANQVY +AV AF  KD  +    S+KF
Sbjct:   604 ALKLFLEAGDDLSRSLTYRYDMVDLTRQVLSKLANQVYTEAVTAFVKKDIGSLGQLSEKF 663

Query:   479 LQLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSK 538
             L+LIKD+D LLAS+DN LLGTWLESAKKLA N  E  QYE+NARTQVTMWYD+N   QSK
Sbjct:   664 LELIKDMDVLLASDDNCLLGTWLESAKKLAKNGDERKQYEWNARTQVTMWYDSNDVNQSK 723

Query:   539 LHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKT 598
             LHDYANKFWSGLL DYYLPRA  YF+ M KSLR+K  F+V++WR++W+ +S  WQ   ++
Sbjct:   724 LHDYANKFWSGLLEDYYLPRARLYFNEMLKSLRDKKIFKVEKWRREWIMMSHKWQ---QS 780

Query:   599 GTKNYPIRAKGDSIAIAKVLYDKYF 623
              ++ YP++AKGD++AI++ L  KYF
Sbjct:   781 SSEVYPVKAKGDALAISRHLLSKYF 805

GO:0004561 "alpha-N-acetylglucosaminidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

RGD\|1564228 Naglu "N-acetylglucosaminidase, alpha" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S1D7 NAGLU "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|P54802 NAGLU "Alpha-N-acetylglucosaminidase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|H9L296 H9L296 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QM01 NAGLU "NAGLU protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291998 naglu "alpha-N-acetylglucosaminidase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0014417 CG13397 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	LOW CONFIDENCE prediction!
3rd Layer	3.2.1.50	0.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IX.3381.1	hypothetical protein (793 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIV.2399.1	hypothetical protein (454 aa)	•	•	•	0.919
	gw1.XIII.847.1	hypothetical protein (437 aa)			•	0.899
	gw1.28.778.1	hypothetical protein (434 aa)			•	0.899
	gw1.133.86.1	hypothetical protein (437 aa)			•	0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		629
pfam05089		333	pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (N	1e-169
pfam12972		269	pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase	1e-103

>gnl\|CDD\|218423 pfam05089, NAGLU, Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain	Back alignment and domain information

 Score =  485 bits (1250), Expect = e-169
 Identities = 172/314 (54%), Positives = 227/314 (72%), Gaps = 8/314 (2%)

Query: 1   MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQ 60
           MAL GINLPLA  GQEA+W +V +   ++ E++ +FF+GPAFLAW RMGNL GWGGPL Q
Sbjct: 28  MALNGINLPLAITGQEAVWYRVLLELGLSDEEIREFFTGPAFLAWWRMGNLEGWGGPLPQ 87

Query: 61  NWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPR 120
           +W+++QL LQKKI+ RM ELGMTPVLP+FAG+VP ALK+ +P ANITR G W        
Sbjct: 88  SWIDKQLALQKKILDRMRELGMTPVLPAFAGHVPRALKRKYPEANITRQGRWGG------ 141

Query: 121 WCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAA 180
           +   Y LDPTDPLF +I   F+++Q   YG    IY+ D FNE  PP+ D +Y+++ G A
Sbjct: 142 FHRPYFLDPTDPLFAKIAARFLEEQKKLYG-TDHIYSADPFNEGGPPSGDPDYLAAAGQA 200

Query: 181 VYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRT 240
           +YK+M + D DAVW++QGWLF  DS FW+   ++A L +VP G+++VLDLF+E  P W+ 
Sbjct: 201 IYKSMQKADPDAVWVLQGWLFV-DSDFWQANPIEAFLSAVPKGRLLVLDLFSERYPQWKR 259

Query: 241 SSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPV 300
           +  FYG P++WCMLHNFGGN  +YG LD +ASG   AR +  S +VGVG+  EGIEQNPV
Sbjct: 260 TESFYGKPWIWCMLHNFGGNTGLYGNLDLVASGIEAARANPGSNLVGVGITPEGIEQNPV 319

Query: 301 VYELMSEMAFRNEK 314
           VYEL+ E+A+R + 
Sbjct: 320 VYELLLELAWREDP 333

Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations. The structure shows that the enzyme is composed of three domains. This central domain has a tim barrel fold. Length = 333

>gnl\|CDD\|221877 pfam12972, NAGLU_C, Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		629
KOG2233		666	consensus Alpha-N-acetylglucosaminidase [Intracell	100.0
PF05089		333	NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-b	100.0
PF12972		267	NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-t	100.0
PF02449		374	Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0	92.53
PF00150		281	Cellulase: Cellulase (glycosyl hydrolase family 5)	92.22

>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.4e-188  Score=1481.33  Aligned_cols=578  Identities=49%  Similarity=0.913  Sum_probs=559.4

Q ss_pred             CCCCCCCccccccchHHHHHHHHHHcCCCHHHHhhhccCchhhhHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 006843            1 MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLEL   80 (629)
Q Consensus         1 MALnGiNmpLa~~GqEaVw~~v~~~lG~t~~ei~~ff~GPA~laW~rMgNi~gwgGPLp~~wi~~q~~LqkkIl~RmreL   80 (629)
                      |||||||++||++|||+||++||+.||++.+||++||+|||||||+|||||++||||||++|+..|..|||||++|||+|
T Consensus        87 mALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~LqkrIidrm~~l  166 (666)
T KOG2233|consen   87 MALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQKRIIDRMLEL  166 (666)
T ss_pred             HHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCCCcccccCC
Q 006843           81 GMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDT  160 (629)
Q Consensus        81 GM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~  160 (629)
                      |||||||+|+||||++++++||++++++++.|+.|+..  |||.++|.|+||||.+||.+|+++|+|+||.++|+|+|||
T Consensus       167 GmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~--~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~tniy~~Dp  244 (666)
T KOG2233|consen  167 GMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSR--YSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGVTNIYSADP  244 (666)
T ss_pred             CCCccchhhccccHHHHHHhCchhceeeccccCCCCcc--eeeeEEccCCcchHHHHHHHHHHHHHHHhCCcccccccCc
Confidence            99999999999999999999999999999999999976  9999999999999999999999999999997799999999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCCCCEEEEecCCCccccccc
Q 006843          161 FNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRT  240 (629)
Q Consensus       161 FnE~~pp~~d~~~L~~~~~~i~~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~a~L~~Vp~~~mliLDL~sE~~p~W~~  240 (629)
                      |||+.||+++|+|+++.+.+||+||+++||+||||||||+|.+|+ ||++++++|||++||.|+||||||++|..|+|++
T Consensus       245 FNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~~d~-FW~~~~ikafL~avP~GrllVLDLyaEv~P~~~~  323 (666)
T KOG2233|consen  245 FNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFTYDP-FWPPWQIKAFLSAVPRGRLLVLDLYAEVVPAWQM  323 (666)
T ss_pred             ccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceeecCC-CCChHHHHHHHhcCCcCcEEEEehhhhhhhHHHh
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             cCCCCCCCceeeeccCCCCccccccchhhhhcChhhhhhcCCCceEEEeeCccccccChhHHHHHHhhccCCCCCCHHHH
Q 006843          241 SSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLEW  320 (629)
Q Consensus       241 ~~~f~G~pwIWc~L~NFGG~~gl~G~l~~i~~~~~~a~~~~~~~m~GiG~tpEGi~~NpvvYeL~~d~aW~~~~id~~~W  320 (629)
                      |.+|+|+|||||||||||||.+|+|.++.|.++|.+|+..++|+|||+||+||||+||||||+||.|++||++++|++.|
T Consensus       324 Tasf~GqpfIWCmLHNFGGn~~lfGal~~InsG~e~Ar~~~nStlVGtGm~~EgI~QN~VvYsf~~e~~wsde~ldl~~W  403 (666)
T KOG2233|consen  324 TASFQGQPFIWCMLHNFGGNRELFGALQKINSGPELARMKPNSTLVGTGMSMEGIDQNYVVYSFMIERGWSDEPLDLNNW  403 (666)
T ss_pred             hhhhcCCceeEEEeeccCCcHhhhhhHHHhccCHHHHhcCCCCceeecccCccccccchhhHHHHHHhccCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCCChhHHHHHHHHHhcccCCCCCCCCCCCCcccccccCCCCcccCcccchhhhhhhcccCCCCccccccc
Q 006843          321 LKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEE  400 (629)
Q Consensus       321 ~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~~~~~~s~~~~rPsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (629)
                      +++|++||||+.++.+++||.+|.+|||||+++...++.....   --|||+.                           
T Consensus       404 lksys~sRY~~~~~~~eaaW~lL~~tvYn~~~~~~~~~~~~~l---~rRp~f~---------------------------  453 (666)
T KOG2233|consen  404 LKSYSESRYGVDFKVAEAAWTLLAGTVYNCPGKWATRGFSYFL---YRRPSFQ---------------------------  453 (666)
T ss_pred             HHHHHHhhhccchHHHHHHHHHHhhhhcCCCcccccCCCceee---Eeccccc---------------------------
Confidence            9999999999999999999999999999999877766632222   2377731                           


Q ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHchhccCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 006843          401 NSDMPQAHLWYSNQELIKGLKLFLNAGNALAGC-ATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFL  479 (629)
Q Consensus       401 ~~~~~~~~~~Yd~~~l~~A~~~ll~~~~~l~~~-~~y~yDLvDv~RQvL~n~~~~~~~~~~~Ay~~~d~~~~~~~~~~~l  479 (629)
                          ..+.+||+.+++..||++||.+.+.+..+ ++|||||||||||+|+..++++|.++.+||..||...+...|.+++
T Consensus       454 ----~k~~~Wyn~sev~~a~rllL~a~~~l~~e~~~fr~DlvDltRq~lqelanq~y~e~~sAflkkd~~sl~~~~~~ll  529 (666)
T KOG2233|consen  454 ----RKTEYWYNVSEVFSAWRLLLTALVHLLGEHPLFRYDLVDLTRQMLQELANQAYLEARSAFLKKDKQSLGALSEKLL  529 (666)
T ss_pred             ----CCceeeecHHHHHHHHHHHHhhhhhhccCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                24679999999999999999999886655 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCchHHHHHHHHhhCCCHHHHHHHHHHhhhcccccCCCCCCCCCCcccccchhcchhhhhccHHHH
Q 006843          480 QLIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLPRA  559 (629)
Q Consensus       480 ~li~dlD~LL~t~~~flLg~Wl~~Ar~~~~~~~ek~~yE~NAR~~IT~WG~~~~~~~g~L~DYA~k~W~GL~~dyY~pRW  559 (629)
                      +|++|||.+|+++++|+||+||++||+.|.+.+|++.||.|||+|||+|||.     |+|+|||||+||||++|||.|||
T Consensus       530 elf~dle~~lasd~nfLlg~WleqAk~~A~n~~er~~fe~nar~qlT~Wgp~-----gqilDYA~kqwaGLvsdYY~pRw  604 (666)
T KOG2233|consen  530 ELFQDLESYLASDDNFLLGQWLEQAKSAAPNSEERQVFEVNARDQLTVWGPT-----GQILDYANKQWAGLVSDYYGPRW  604 (666)
T ss_pred             HHHHHHHHHHccCcchhHHHHHHHHHhhCCChhhhhhccccccceEEEECCC-----cchhhHHHHHHHHhhhhcccHHH
Confidence            9999999999999999999999999999999999999999999999999997     89999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHH-HHhhhcccccccCCCCCCCCCCCCHHHHHHHHHHHhhh
Q 006843          560 STYFDYMSKSLREKSEFQVDRWRQQWV-FISISWQSNWKTGTKNYPIRAKGDSIAIAKVLYDKYFG  624 (629)
Q Consensus       560 ~~f~~~l~~~l~~~~~~~~~~~~~~~~-~~E~~W~~~~~~~~~~y~~~p~gd~~~~a~~l~~ky~~  624 (629)
                      +.|++.+.+++..|++|+.++|..+++ .+|.+++    .++..||++|.||++++++.|+.||++
T Consensus       605 rlf~e~il~slhd~~pFn~t~f~~~v~~~~e~~fs----~s~~vYPv~p~Gdt~~is~~if~ky~P  666 (666)
T KOG2233|consen  605 RLFLEWILESLHDGKPFNHTEFSISVFRDVERPFS----ISNIVYPVKPKGDTLAISRHIFSKYFP  666 (666)
T ss_pred             HHHHHHHHHHHhcCCCccccchhhHHHHhhhcccc----ccccccccCCCccHHHHHHHHHHhcCC
Confidence            999999999999999999999999995 9999999    999999999999999999999999973

>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []	Back alignment and domain information

>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		629
2vc9_A		891	Family 89 Glycoside Hydrolase From Clostridium Perf		3e-74
4a4a_A		914	Cpgh89 (E483q, E601q), From Clostridium Perfringens		2e-73

>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens In Complex With 2-Acetamido-1,2-Dideoxynojirmycin Length = 891

Back alignment and structure

Iteration: 1

Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 180/625 (28%), Positives = 290/625 (46%), Gaps = 49/625 (7%) Query: 2 ALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQN 61 A+ G+NL L GQE + ++ F + E++ +F SGPA+ AW M N+ G+GGPL + Sbjct: 298 AMNGVNLVLDIIGQEEVLRRTLNEFGYSDEEVKEFISGPAYFAWFYMQNMTGFGGPLPND 357 Query: 62 WLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRW 121 W Q+ L +K+ RM G+ PVL ++G VP K+ A G W DR P Sbjct: 358 WFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTISQGGWCGFDR-PDM 416 Query: 122 CCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAAV 181 TY+ + F ++ + F ++Q +GDVT+ Y D F+E + N + + Sbjct: 417 LKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHEGGNTGDLDN--GKIYEII 474 Query: 182 YKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRTS 241 M E D DAVW++Q W P L + +VLDLF+EV P W Sbjct: 475 QNKMIEHDNDAVWVIQNWQ--------GNPSNNKLEGLTKKDQAMVLDLFSEVSPDWNRL 526 Query: 242 SQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVV 301 + P++W MLHNFGG + + + +A+ + ++ + MVG+G+ E I NP+ Sbjct: 527 EE-RDLPWIWNMLHNFGGRMGMDAAPEKLAT-EIPKALANSEHMVGIGITPEAINTNPLA 584 Query: 302 YELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDF 361 YEL+ +MA+ +++ W + Y RRYGK E+ W I+ T Y + Sbjct: 585 YELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDTAYKKRN--------- 635 Query: 362 IVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGLK 421 G+A S ++A PG F + S + + Y E K ++ Sbjct: 636 ---------DYYQGAAES------IINARPG---FGIKSASTWGHSKIVYDKSEFEKAIE 677 Query: 422 LFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQL 481 +F + + YD DI +Q L+ A + Y A+ + + F S KFL+L Sbjct: 678 IFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEKFKFVSGKFLEL 737 Query: 482 IKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQ--YEYNARTQVTMWYDTNITTQSKL 539 IK + +L++ FL+G W+E A+ + + + + +E+NAR VT W N L Sbjct: 738 IKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTWGSRNNADGGGL 797 Query: 540 HDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEF-QVDRWRQQWVFISISWQSNWKT 598 DY+N+ WSGL DYY R + + + L ++ +D W + W + Sbjct: 798 KDYSNRQWSGLTEDYYYARWEKWINGLQAELDGGAKAPNID-----WFKMEYDWVNKKSD 852 Query: 599 GTKNYPIRAKGDSIA-IAKVLYDKY 622 K YP A +++ +AK+ + Y Sbjct: 853 TDKLYPTEASNENLGELAKIAMESY 877

PyMOL of 2vc9

>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In Complex With Its Substrate Glcnac-Alpha-1,4-Galactose Length = 914

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		629
4a4a_A		914	Alpha-N-acetylglucosaminidase family protein; hydr	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Length = 914	Back alignment and structure

 Score =  703 bits (1816), Expect = 0.0
 Identities = 173/625 (27%), Positives = 280/625 (44%), Gaps = 47/625 (7%)

Query: 1   MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQ 60
            A+ G+NL L   GQE + ++    F  + E++ +F SGPA+ AW  M N+ G+GGPL  
Sbjct: 320 CAMNGVNLVLDIIGQEEVLRRTLNEFGYSDEEVKEFISGPAYFAWFYMQNMTGFGGPLPN 379

Query: 61  NWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPR 120
           +W  Q+  L +K+  RM   G+ PVL  ++G VP   K+    A     G W   DR P 
Sbjct: 380 DWFEQRAELGRKMHDRMQSFGINPVLQGYSGMVPRDFKEKNQEAQTISQGGWCGFDR-PD 438

Query: 121 WCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTNDTNYISSLGAA 180
              TY+ +     F ++ + F ++Q   +GDVT+ Y  D F++     +       +   
Sbjct: 439 MLKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYGVDPFHQGGNTGDL--DNGKIYEI 496

Query: 181 VYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPLGKMIVLDLFAEVKPIWRT 240
           +   M E D DAVW++Q W           P    L       + +VLDLF+EV P W  
Sbjct: 497 IQNKMIEHDNDAVWVIQNW--------QGNPSNNKLEGLTKKDQAMVLDLFSEVSPDWNR 548

Query: 241 SSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPV 300
             +    P++W MLHNFGG + +    + +A+    A  + +  MVG+G+  + I  NP+
Sbjct: 549 -LEERDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKAL-ANSEHMVGIGITPQAINTNPL 606

Query: 301 VYELMSEMAFRNEKVQVLEWLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTD 360
            YEL+ +MA+  +++    W + Y  RRYGK   E+   W I+  T Y   +       +
Sbjct: 607 AYELLFDMAWTRDQINFRTWTEDYIERRYGKTNKEILEAWNIILDTAYKKRNDYYQGAAE 666

Query: 361 FIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSEENSDMPQAHLWYSNQELIKGL 420
            I+   +  P     SA                        S    + + Y   E  K +
Sbjct: 667 SII---NARPGFGIKSA------------------------STWGHSKIVYDKSEFEKAI 699

Query: 421 KLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFLQ 480
           ++F    +       + YD  DI +Q L+  A + Y     A+ + +   F   S KFL+
Sbjct: 700 EIFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEKFKFVSGKFLE 759

Query: 481 LIKDIDELLASNDNFLLGTWLESAKKLATNPSEMIQ--YEYNARTQVTMWYDTNITTQSK 538
           LIK  + +L++   FL+G W+E A+ +  +  +  +  +E+NAR  VT W   N      
Sbjct: 760 LIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTWGSRNNADGGG 819

Query: 539 LHDYANKFWSGLLVDYYLPRASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKT 598
           L DY+N+ WSGL  DYY  R   + + +   L   ++     W +        W +    
Sbjct: 820 LKDYSNRQWSGLTEDYYYARWEKWINGLQAELDGGAKAPNIDWFKME----YDWVNKKSD 875

Query: 599 GTKNYPIRAKGDSIAIA-KVLYDKY 622
             K YP  A  +++    K+  + Y
Sbjct: 876 TDKLYPTEASNENLGELAKIAMESY 900

PyMOL of 4a4a

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		629
4a4a_A		914	Alpha-N-acetylglucosaminidase family protein; hydr	100.0
3n9k_A		399	Glucan 1,3-beta-glucosidase; aromatic entranceway/	94.68
1kwg_A		645	Beta-galactosidase; TIM barrel, glycoside hydrolas	94.25
3tty_A		675	Beta-GAL, beta-galactosidase; TIM barrel, glycosid	93.27
4ekj_A		500	Beta-xylosidase; TIM-barrel fold, hemicellulase, h	91.9
1w91_A		503	Beta-xylosidase; MAD, seMet, tetramer, hydrolase;	91.0
1qnr_A		344	Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt	89.36
1h4p_A		408	Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca	89.15
1uhv_A		500	Beta-xylosidase; family 39 glycoside hydrolase, xy	88.18
2osx_A		481	Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel	88.03
3qr3_A		340	Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A	87.74
3icg_A		515	Endoglucanase D; cellulase, xylanase, carbohydrate	84.59
3l55_A		353	B-1,4-endoglucanase/cellulase; putative beta-1,4-e	83.39
1ceo_A		343	Cellulase CELC; glycosyl hydrolase, family A/5 of	83.27
3ndz_A		345	Endoglucanase D; cellotriose, xylanase, carbohydra	82.36
3nco_A		320	Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1	81.72

>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A	Back alignment and structure

Probab=100.00  E-value=5.7e-195  Score=1673.21  Aligned_cols=575  Identities=30%  Similarity=0.573  Sum_probs=543.7

Q ss_pred             CCCCCCCccccccchHHHHHHHHHHcCCCHHHHhhhccCchhhhHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 006843            1 MALQGINLPLAFNGQEAIWQKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLEL   80 (629)
Q Consensus         1 MALnGiNmpLa~~GqEaVw~~v~~~lG~t~~ei~~ff~GPA~laW~rMgNi~gwgGPLp~~wi~~q~~LqkkIl~RmreL   80 (629)
                      |||||||||||++|||+||+|||++||||++||++||+|||||||+|||||+|||||||++||++|.+||||||+|||||
T Consensus       320 MAL~GiNlpLa~~GqEavw~~v~~~lG~t~~ei~~ff~GPAflaW~rMgNl~~wgGPLp~~w~~~q~~Lq~kIl~Rmrel  399 (914)
T 4a4a_A          320 CAMNGVNLVLDIIGQEEVLRRTLNEFGYSDEEVKEFISGPAYFAWFYMQNMTGFGGPLPNDWFEQRAELGRKMHDRMQSF  399 (914)
T ss_dssp             HHHTTCCEEECCTTHHHHHHHHHGGGTCCHHHHHHHSCCTTCHHHHHTTSCCSTTCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCchhhhhhhhHHHHHHHHHHcCCCHHHHHHhcCCchhhHHHHhcCccccCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeCcCCCCCCCchhhHhhCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCCCcccccCC
Q 006843           81 GMTPVLPSFAGNVPAALKKIFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDT  160 (629)
Q Consensus        81 GM~PVLPgF~G~VP~~~~~~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~  160 (629)
                      ||+||||||+||||++|+++||+|+|+++|.|+||++ |++|||++|+|+||+|++||++||+||+++||+++|||+|||
T Consensus       400 GM~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~gf~~-~~~~~~~~l~p~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~  478 (914)
T 4a4a_A          400 GINPVLQGYSGMVPRDFKEKNQEAQTISQGGWCGFDR-PDMLKTYVNEGEADYFQKVADVFYEKQKEVFGDVTNFYGVDP  478 (914)
T ss_dssp             TCEEEEECCSCEECTTHHHHSTTCCEECCCEETTEEC-CEEECSSCCTTSCCHHHHHHHHHHHHHHHHHCSCCSEEECCT
T ss_pred             CCeecCCCcCCCCChHHHhhCCCCeeecCCCCCCCCC-chhcccccCCCCChHHHHHHHHHHHHHHHHhCCcccccccCc
Confidence            9999999999999999999999999999999999999 556669999999999999999999999999999889999999


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHccCCCceEEEecccCCCCCCCCCchhHHHhhcCCCC-CCEEEEecCCCcccccc
Q 006843          161 FNENTPPTNDTNYISSLGAAVYKAMSEGDKDAVWLMQGWLFYSDSAFWKPPQMKALLHSVPL-GKMIVLDLFAEVKPIWR  239 (629)
Q Consensus       161 FnE~~pp~~d~~~L~~~~~~i~~am~~~dP~AvWvmQgW~F~~~~~fW~~~~~~a~L~~Vp~-~~mliLDL~sE~~p~W~  239 (629)
                      |||++||++.  .|++++++||++|+++||+||||||||+|++       .  +++|++||+ ||||||||+||..|+|+
T Consensus       479 FnE~~~~~~~--~l~~~~~~v~~am~~~dp~AvWv~QgW~~~~-------~--~~~L~~vp~~~~mlvLDL~se~~p~w~  547 (914)
T 4a4a_A          479 FHQGGNTGDL--DNGKIYEIIQNKMIEHDNDAVWVIQNWQGNP-------S--NNKLEGLTKKDQAMVLDLFSEVSPDWN  547 (914)
T ss_dssp             TTTSCCCTTC--CHHHHHHHHHHHHHHHCTTCEEEEEEBTTBS-------C--HHHHTTCSCGGGEEEEETTTTTSCCCH
T ss_pred             cccCCCCCCc--CHHHHHHHHHHHHHHhCCCCEEEEcccCCCC-------h--HHHHhCCCCCCCEEEEEcccccccccc
Confidence            9999887553  3899999999999999999999999999753       2  479999997 99999999999999999


Q ss_pred             ccCCCCCCCceeeeccCCCCccccccchhhhhcChhhhhhcCCCceEEEeeCccccccChhHHHHHHhhccCCCCCCHHH
Q 006843          240 TSSQFYGAPYVWCMLHNFGGNIEIYGILDSIASGPVDARVSENSTMVGVGMCMEGIEQNPVVYELMSEMAFRNEKVQVLE  319 (629)
Q Consensus       240 ~~~~f~G~pwIWc~L~NFGG~~gl~G~l~~i~~~~~~a~~~~~~~m~GiG~tpEGi~~NpvvYeL~~d~aW~~~~id~~~  319 (629)
                      ++++ ||||||||||||||||+||+|+++.|+++|.+|+.. +++|||||+|||||||||||||||+||+|++++||+++
T Consensus       548 ~~~~-~G~pwiwc~L~NFGGn~gl~G~~~~~~~~~~~a~~~-~~~m~G~G~tpEgie~NpvvYeL~~e~aW~~~~id~~~  625 (914)
T 4a4a_A          548 RLEE-RDLPWIWNMLHNFGGRMGMDAAPEKLATEIPKALAN-SEHMVGIGITPQAINTNPLAYELLFDMAWTRDQINFRT  625 (914)
T ss_dssp             HHHT-TTCCEEEEECCCSTTCCSSCCCHHHHHHHHHHHHHT-CSCEEEEEECCSCSCSCHHHHHHHHHGGGCSSCCCHHH
T ss_pred             hhhh-CCCceEEeccccCCCCCCCcccHHHHhhhHHHHhhc-CCCceEEeechhhcccCHHHHHHHHhcccCCCCCCHHH
Confidence            9998 899999999999999999999999999999999876 47999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCChhHHHHHHHHHhcccCCCCCCCCCCCCcccccccCCCCcccCcccchhhhhhhcccCCCCcccccc
Q 006843          320 WLKTYAHRRYGKAVPEVEATWEILYHTVYNCTDGIADHNTDFIVKFPDWDPSLLSGSAISKRDQMHALHALPGPRRFLSE  399 (629)
Q Consensus       320 W~~~Ya~rRYG~~~~~~~~AW~iL~~tvY~~~~~~~~~~~~~~~s~~~~rPsl~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (629)
                      ||++|++||||+.++++++||++|++|||||+...   ...+.+|++|+||++...                        
T Consensus       626 W~~~ya~~RYG~~~~~~~~AW~~L~~tvY~~~~~~---~~~~~~s~~~~rP~l~~~------------------------  678 (914)
T 4a4a_A          626 WTEDYIERRYGKTNKEILEAWNIILDTAYKKRNDY---YQGAAESIINARPGFGIK------------------------  678 (914)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHTTTSCCCSC---CCSSCCCGGGSCSCSSCC------------------------
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHhhhcCCCCcc---ccCCCcCeeeeCCCCCcc------------------------
Confidence            99999999999999999999999999999998622   223467899999997533                        


Q ss_pred             cCCCCCCCcccCCHHHHHHHHHHHHHchhccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 006843          400 ENSDMPQAHLWYSNQELIKGLKLFLNAGNALAGCATYRYDLVDITRQALSKLANQVYMDAVIAFQHKDASAFNIHSQKFL  479 (629)
Q Consensus       400 ~~~~~~~~~~~Yd~~~l~~A~~~ll~~~~~l~~~~~y~yDLvDv~RQvL~n~~~~~~~~~~~Ay~~~d~~~~~~~~~~~l  479 (629)
                      +.++|++++++|||++|++||++||+++++|+++++|||||||||||||+|+++.+|.++++||++||.+.|++.+++||
T Consensus       679 ~~~~w~~~~~~Yd~~~~~~A~~lll~~~~~l~~s~~y~yDLvDvtRQ~l~n~~~~~~~~~~~ay~~~d~~~~~~~~~~~l  758 (914)
T 4a4a_A          679 SASTWGHSKIVYDKSEFEKAIEIFAKNYDEFKDSDAFLYDFADILKQLLANSAQEYYEVMCNAYNNGNGEKFKFVSGKFL  758 (914)
T ss_dssp             CSSTTCCCCCCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccccCcccccCCHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCCchHHHHHHHHhhCCCHH--HHHHHHHHhhhcccccCCCCCCCCCCcccccchhcchhhhhccHH
Q 006843          480 QLIKDIDELLASNDNFLLGTWLESAKKLATNPS--EMIQYEYNARTQVTMWYDTNITTQSKLHDYANKFWSGLLVDYYLP  557 (629)
Q Consensus       480 ~li~dlD~LL~t~~~flLg~Wl~~Ar~~~~~~~--ek~~yE~NAR~~IT~WG~~~~~~~g~L~DYA~k~W~GL~~dyY~p  557 (629)
                      +||++||+||+||++|+||+||++||++|.+++  ||++||+|||+|||+|||+.++++|+|+|||||+|+||++|||+|
T Consensus       759 ~ll~~~D~lL~t~~~flLg~Wl~~Ar~~a~~~~~~e~~~yE~NAR~qIT~WG~~~~~~~g~l~DYA~k~W~GL~~dyY~p  838 (914)
T 4a4a_A          759 ELIKLQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNARALVTTWGSRNNADGGGLKDYSNRQWSGLTEDYYYA  838 (914)
T ss_dssp             HHHHHHHHHHTTCGGGBHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHTTTSSSHHHHTTTSCTTTTCCCCBTHHHHTHHH
T ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHhcCCCCHHHHHHHHHHhHheEeeccCCCCCCCCcccccccchhhhhHHHHHHH
Confidence            999999999999999999999999999999876  899999999999999999755566899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhhcccccccC----CCCCCCCCC-CCHHHHHHHHHHHhhh
Q 006843          558 RASTYFDYMSKSLREKSEFQVDRWRQQWVFISISWQSNWKTG----TKNYPIRAK-GDSIAIAKVLYDKYFG  624 (629)
Q Consensus       558 RW~~f~~~l~~~l~~~~~~~~~~~~~~~~~~E~~W~~~~~~~----~~~y~~~p~-gd~~~~a~~l~~ky~~  624 (629)
                      ||++||++|.++|++|++|+..+    |+++|++|+    ++    ++.||++|. ||++++|++||+||.-
T Consensus       839 RW~~f~~~l~~~l~~~~~~~~~~----~~~~e~~W~----~~~~~~~~~yp~~~~g~d~~~~a~~~~~ky~~  902 (914)
T 4a4a_A          839 RWEKWINGLQAELDGGAKAPNID----WFKMEYDWV----NKKSDTDKLYPTEASNENLGELAKIAMESYSV  902 (914)
T ss_dssp             HHHHHHHHHHHHHTTCSCCCCCC----HHHHHHHHH----TCCTTTSCCCCCSCCCCCHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhcCCCCChHH----HHHHHHHHh----ccccccCCcCCCCCCCCCHHHHHHHHHHHccc
Confidence            99999999999999999998764    569999999    64    589999999 5999999999999954

PyMOL of 4a4a

>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A	Back alignment and structure

>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*	Back alignment and structure

>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*	Back alignment and structure

>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides}	Back alignment and structure

>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A*	Back alignment and structure

>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A*	Back alignment and structure

>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3	Back alignment and structure

>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A	Back alignment and structure

>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A*	Back alignment and structure

>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina}	Back alignment and structure

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A	Back alignment and structure

>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A*	Back alignment and structure

>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		629
d1kwga2		393	A4 beta-galactosidase {Thermus thermophilus [TaxId	94.38
d1ceoa_		340	Endoglucanase CelC {Clostridium thermocellum [TaxI	92.67
d2pb1a1		394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	89.11
d1qnra_		344	Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	87.47
d1vjza_		325	Endoglucanase homologue TM1752 {Thermotoga maritim	87.39
d1bqca_		302	Beta-mannanase {Thermomonospora fusca [TaxId: 2021	86.59
d1uhva2		346	Beta-D-xylosidase, catalytic domain {Thermoanaerob	83.22

>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: A4 beta-galactosidase
species: Thermus thermophilus [TaxId: 274]

Probab=94.38  E-value=0.094  Score=49.36  Aligned_cols=128  Identities=15%  Similarity=0.156  Sum_probs=91.5

Q ss_pred             HHHHHHcCCCHHHHhhhccCchhhhHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCeeCcCCCCCCCchhhHh
Q 006843           20 QKVFMNFNVTMEDLNDFFSGPAFLAWARMGNLHGWGGPLAQNWLNQQLVLQKKIVSRMLELGMTPVLPSFAGNVPAALKK   99 (629)
Q Consensus        20 ~~v~~~lG~t~~ei~~ff~GPA~laW~rMgNi~gwgGPLp~~wi~~q~~LqkkIl~RmreLGM~PVLPgF~G~VP~~~~~   99 (629)
                      .+..+++|++-=.+-       -++|.|+---.|   ..--       +-..++|+.+++.||+||+=-|....|..+.+
T Consensus        20 ~~~~~~~G~n~vR~~-------i~~W~~iep~~G---~~~~-------~~~d~~i~~~~~~Gi~~iv~l~~~~~P~w~~~   82 (393)
T d1kwga2          20 ARRMREAGLSHVRIG-------EFAWALLEPEPG---RLEW-------GWLDEAIATLAAEGLKVVLGTPTATPPKWLVD   82 (393)
T ss_dssp             HHHHHHHTCCEEEEC-------TTCHHHHCSBTT---BCCC-------HHHHHHHHHHHTTTCEEEEECSTTSCCHHHHH
T ss_pred             HHHHHHcCCCEEEec-------ccchhhcCCCCC---ccCH-------HHHHHHHHHHHHCCCEEEEEcCCCCCchhhhc
Confidence            456778887753311       136888853332   2212       33457999999999999988888889999999


Q ss_pred             hCCCCccccCCCCCCcCCCCCcccccccCCCCchHHHHHHHHHHHHHHHhCCCCcccccCCCCCCCCCCC
Q 006843          100 IFPSANITRLGDWNTVDRNPRWCCTYLLDPTDPLFVEIGEAFIKQQILEYGDVTDIYNCDTFNENTPPTN  169 (629)
Q Consensus       100 ~~P~a~i~~~~~W~gF~~~p~~~~~~~LdP~dplF~~i~~~F~~~q~~~yG~~~h~Y~~D~FnE~~pp~~  169 (629)
                      .+|+.......  +.+.+   +....+.++.+|.+.+..+.|++...+.|+.-..+...+..||..-...
T Consensus        83 ~~~~~~~~~~~--g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne~~~~~~  147 (393)
T d1kwga2          83 RYPEILPVDRE--GRRRR---FGGRRHYCFSSPVYREEARRIVTLLAERYGGLEAVAGFQTDNEYGCHDT  147 (393)
T ss_dssp             HCGGGSCBCTT--SCBCC---SSSSCCCCTTCHHHHHHHHHHHHHHHHHHTTCTTEEEEECSSSTTTTTT
T ss_pred             cCcccccccCC--Ccccc---cccccccCCCCHHHHHHHHHHHHHHHHHhcCCceEEEEeecccccccCC
Confidence            99987554422  11222   4455678899999999999999999999987346778888898865443

PyMOL of d1kwga2

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]}	Back information, alignment and structure

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}	Back information, alignment and structure

>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]}	Back information, alignment and structure